Citrus Sinensis ID: 008764

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550----
Protein Sequence
MKLEFESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTNDHKSAAASSNCAESLVDSQSDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWASALIAELDQFKNEKAVNRNLSASSPEIDLMDDFLEMEQLAAMPNNKSGKHVESGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRAALPIPKTVGESWKLPSNVTFSHKRDLNSPGVVAGTTCPSISKNDGNTPPSSSSSTSSAMPSNQINPEKNRNGFAKFFSRTKNGIQLEL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEEc
Coil and Loop (DISEMBL)
MKLEFESRLLELQSKaetaksepsyhmdpdLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRasstndhksaaassncaeslvdsqsDSWERLNAVEMDIRkmggtepnmsepscsdsWASALIAELDQFknekavnrnlsasspeidLMDDFLEMEQLaampnnksgkhvesgnvttqsTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDtasipefsraalpipktvgeswklpsnvtfshkrdlnspgvvagttcpsiskndgntppssssstssampsnqinpeknrnGFAKFFSRtkngiqlel
Flexible Loop (DISEMBL)
MKLEFESRLLELQskaetaksepsyhmDPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAetaskqhldsIKKVAKLEAECRRLKAMACRAsstndhksaaassncaeslvdsqsdsWERLNAVEMDIRKMggtepnmsepsCSDSWASALIAELDQFKNEKAVNRNLSASSPEIDLMDDFLEMEQLAAMPNNKSGKHVESGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQrelnlvneskRIVEsnvssmemeAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRAALPIPKTVGESWKLPSNVTfshkrdlnspgvVAGTtcpsiskndgntppssssstssampsnqinPEKNRNGFAKFfsrtkngiqlel
Low Complexity Region (SEG)
MKLEFESRLLELQSKAETAKSEPSYHMDPDlfekleflekeNSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTNDHKSAAASSNCAESLVDSQSDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWASALIAELDQFKNEKAVNRNLSASSPEIDLMDDFLEMEQLAAMPNNKSGKHVESGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDaekaeleekleQmdaekaeleeklekmdaekakleekiekmeaekaelemalakSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRAALPIPKTVGESWKLPSNVTFSHKRDLNSPGVVAGTTCPSISKNDGNtppssssstssAMPSNQINPEKNRNGFAKFFSRTKNGIQLEL
Disordered region (IsUnstruct)
************************************************LLI*************************************************************************************************************LI*******************************************************************************************************************************************************************************************************************************ITVKCQ******************************DLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRAALPIPKTVGESWKLPSNVTF********************************************************************
Disordered Region (DISOPRED)
MKLEFES**********************************************************************************************************************************************************************************************AAMPNNKSGKHVE********************************************************************************************************************************************************************************************************************************************************************************************************************************************FSRTK*******
Disordered Region (DISEMBL)
MKLEFESRLLELQS**********YHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSN***********DSIKKVAKLEAECRRLKAMA****************************SWERLNAVEMDIRKMGGT**********DSWASALIAELDQFKNEKAVNRNLSASSPEIDLMDDFLEMEQLAAMPNNKSGKHVESGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEK*****************ELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRAALPIPKTVGESWKLPSNVTFSHKRDLNSPGVVAGTTCPSIS*********************QINPEKNRNGFAKFFSRTKNGIQLEL
Disordered Region (DISPRO)
MKLEFESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTNDHKSAAASSNCAESLVDSQSDSWERLN*VEMDIRKMGGTEPNMSEPSCSDSWASALIAELDQFKNEKAVNRNLSASSPEIDLMDDFLEMEQLAAMPNNKSGKHVESGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRA**************************************************************************KFF*RTKNGIQLEL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MxxxxxxxxxxxxxxxxxxxxxPSYHMDPDLFEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTASKQHLDSIKKVAKLEAECRRLKAMACRASSTNDHKSAAASSNCAESLVDSQSDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWASALIAELDQFKNEKAVNRNLSASSPEIDLMDDFLEMEQLAAMPNNKSGKHVESGNVTTQSTLAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRAALPIPKTVGESWKLPSNVTFSHKRDLNSPGVVAGTTCPSISKNDGNTPPSSSSSTSSAMPSNQINPEKNRNGFAKFFSRTKNGIQLEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	554	2.2.26 [Sep-21-2011]
Q8LLE5	582	Filament-like plant prote	N/A	no	0.877	0.835	0.480	1e-114
Q9SFF4	629	Filament-like plant prote	yes	no	0.851	0.750	0.397	3e-78
Q9MA92	615	Filament-like plant prote	no	no	0.745	0.671	0.388	2e-58
Q9CAP9	779	Filament-like plant prote	no	no	0.460	0.327	0.452	6e-43
Q9C698	1054	Filament-like plant prote	no	no	0.442	0.232	0.309	1e-13
Q0WSY2	982	Filament-like plant prote	no	no	0.054	0.030	0.484	3e-09

>sp|Q8LLE5|FPP_SOLLC Filament-like plant protein (Fragment) OS=Solanum lycopersicum GN=FPP PE=1 SV=1

 Score =  413 bits (1062), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 265/551 (48%), Positives = 344/551 (62%), Gaps = 65/551 (11%)

Query: 2   KLEFESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAI 61
           K   E +LL+LQ++ E  K+E     DPD+  +L++LEKEN+ALK+EL+  SE LEIR I
Sbjct: 86  KTALEKQLLKLQTQVEAGKAEMPTSTDPDILVRLKYLEKENAALKIELVSCSEVLEIRTI 145

Query: 62  ERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTNDHKSAAASSNCAESLV 121
           ERDLS QAAETASKQ L+SIKK+ KLE ECR+L+AMA ++S  ND +S+A SS   +S+ 
Sbjct: 146 ERDLSTQAAETASKQQLESIKKLTKLEVECRKLQAMARKSSPFNDQRSSAVSSFYVDSVT 205

Query: 122 DSQSDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWASALIAELDQFKNEKAVNRNLSAS 181
           DSQSDS ERLN V+ D  KM   E    EPSCS+SWASALIAELDQFKNEKA+ + L+A 
Sbjct: 206 DSQSDSGERLNTVDNDALKMSKLETREYEPSCSNSWASALIAELDQFKNEKAMPKTLAAC 265

Query: 182 SPEIDLMDDFLEMEQLAAMPN--NKSGKHVESGNVTTQSTLAESSLRAELEAMIHRTAEL 239
           S EID+MDDFLEMEQLAA+    NK+   V S  V   S   E+ L AE  ++  R  EL
Sbjct: 266 SIEIDMMDDFLEMEQLAALSETANKT-PSVTSDAVPHDSPNIENPLAAEYNSISQRVVEL 324

Query: 240 EQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKI 299
           EQKLE+++AEK +LE   +             E  DA K                     
Sbjct: 325 EQKLEKIEAEKAELENAFN-------------ESQDALKV-------------------- 351

Query: 300 EKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSME 359
                              S++  E Q R     LE LQ+EL++VNESK ++E  +  ME
Sbjct: 352 ------------------SSLQLKETQTR-----LEGLQKELDVVNESKELLEFQLYGME 388

Query: 360 MEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIK 419
           +EA+TM+  I+SL+ EVE E++LS ++  KC +LE +  +  QE E QQ + SN+E+KIK
Sbjct: 389 VEARTMSVNIDSLKTEVEKEKSLSSEMEAKCHELENDLRKKSQEAEAQQTSGSNSELKIK 448

Query: 420 QEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRAALPIPKTVGESWK 479
           QEDL VAA KLAECQKTI SLGKQL+SLATLEDFL DTA++P        + K  GE WK
Sbjct: 449 QEDLAVAADKLAECQKTIASLGKQLQSLATLEDFLTDTANLP---GGGAVVAKAGGELWK 505

Query: 480 LPSNVTFSHKRDLNSPGVVAGTTCPSISKNDGNTPPSSSSSTSSAMPSNQINPEKNRNGF 539
           L  N TF+ KRD + P  V      S ++N+G +P SSSSS++S+         K++NGF
Sbjct: 506 LHVNETFTPKRD-SDPTKVEENVSHSTNENEGESPASSSSSSTSSTTQASTG--KSKNGF 562

Query: 540 AKFFSRTKNGI 550
            K FSR+K+G+
Sbjct: 563 GKLFSRSKSGV 573

Solanum lycopersicum (taxid: 4081)

>sp|Q9SFF4|FPP2_ARATH Filament-like plant protein 2 OS=Arabidopsis thaliana GN=FPP2 PE=1 SV=1

 Score =  293 bits (749), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 238/599 (39%), Positives = 316/599 (52%), Gaps = 127/599 (21%)

Query: 5   FESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERD 64
            E R+LELQ +AE AKSE                   N  L+ E L Q E+LEI  IERD
Sbjct: 105 LEKRVLELQKEAEAAKSE-------------------NMMLRREFLTQREDLEIVMIERD 145

Query: 65  LSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTNDHKSAAASSNCAESLVDSQ 124
           LS QAAETASKQHLD IKK+AKLEAECR+L+ +A             +SS  +   VDS 
Sbjct: 146 LSTQAAETASKQHLDIIKKLAKLEAECRKLRILA-----------KTSSSLSSNQSVDSH 194

Query: 125 SDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWA-SALIAELDQFKNEKAVNRNL--SAS 181
           SD               GG E    E SCSDSWA SA I+ELDQ KNEK  NR+L  + S
Sbjct: 195 SD---------------GGRER--VEGSCSDSWASSAFISELDQIKNEKGGNRSLQGTTS 237

Query: 182 SPEIDLMDDFLEMEQLAAMPNNKSGKHVESGN-VTTQSTL-------------------A 221
           S EIDLMDDFLEME+L A+P     K+ + G  ++    L                   A
Sbjct: 238 STEIDLMDDFLEMERLVALPTETQAKNSKDGYELSLMEKLEKIQAEKDDLEREVKCCREA 297

Query: 222 ESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEK-------AELEEKLEQM 274
           E  L  E+EA++    ELE  L+R++AEK +L+   D +  +         E++ KLE++
Sbjct: 298 EKRLSLEIEAVVGDKMELEDMLKRVEAEKAELKTSFDVLKDKYQESRVCFQEVDTKLEKL 357

Query: 275 DAEKAELEE--------------KLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSV 320
            AEK EL+               +LE +  +K ++E+++EKMEAEKAEL+++    +D  
Sbjct: 358 QAEKDELDSEVICCKEAEKRFSLELEAVVGDKIEMEDELEKMEAEKAELKISFDVIKDQY 417

Query: 321 EASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMER 380
           + S +  +E  M+LE ++REL L NESK   ES V+ ME               EV  ER
Sbjct: 418 QESRVCFQEVEMKLEAMKRELKLANESKTQAESRVTRMEA--------------EVRKER 463

Query: 381 ALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSL 440
            +S  +  KC+  EEE  R  +E  +  I +   E KIKQED+  AAGK A+CQKTI SL
Sbjct: 464 IVSDGLKEKCETFEEELRREIEEKTM--IKREKVEPKIKQEDIATAAGKFADCQKTIASL 521

Query: 441 GKQLKSLATLEDFLIDTASIPEFSRAALPIPKTVGESWKLPSNVTFSHKRDLNSPGVVAG 500
           GKQL+SLATLE+FLIDTASIP  +R+       +G   K P                + G
Sbjct: 522 GKQLQSLATLEEFLIDTASIPGSARSVHNKEALLG---KDPHECI----------KTING 568

Query: 501 TTCPSISKNDGNTPPSSSSSTSSA-------MPSNQINPEKNRNGFAKFFSRTKNGIQL 552
            +   ++  + N   S   S+SS        M SN+ + EKNRNGFA  F+R++N + L
Sbjct: 569 RSLEFLAIQNSNNKTSPPCSSSSDSTTVSLIMSSNRGSSEKNRNGFATVFTRSRNSVNL 627

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MA92|FPP3_ARATH Filament-like plant protein 3 OS=Arabidopsis thaliana GN=FPP3 PE=2 SV=2

 Score =  227 bits (578), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 193/497 (38%), Positives = 291/497 (58%), Gaps = 84/497 (16%)

Query: 2   KLEFESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAI 61
           K + E+R+ ELQ++ +   S  S H   DL+ KLE LEKENSALK++LL +SEE++IR I
Sbjct: 162 KSQLEARIEELQARQDVTTS--SVH--EDLYPKLEALEKENSALKLQLLSKSEEVKIRTI 217

Query: 62  ERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTNDHKSAAASSNCAESLV 121
           ERDLS QAAE+ASKQ L+ IKK+ KLEAECR+L+ M  R+ +++D KS+          +
Sbjct: 218 ERDLSTQAAESASKQQLEGIKKLTKLEAECRKLRVMVRRSDNSSDLKSS----------I 267

Query: 122 DSQSDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWASALIAELDQFKNEKAVNRNLSAS 181
           D+QSD   R++           ++  M  PS                  EK + ++  A+
Sbjct: 268 DNQSDYSGRVSF----------SDNEMQSPS------------------EKIIGKSSMAT 299

Query: 182 SPEIDLMDDFLEMEQLAAMPNNKSG-KHVESGNVTTQSTLAESSLRAELEAMIHRTAELE 240
           S +I LMDDFLEME+LAA+P+++ G KH ES     +S    + L+ EL+  + R +ELE
Sbjct: 300 SVDIGLMDDFLEMEKLAALPHSEPGRKHSESNKELEKSNAHVNQLKHELKTSLRRISELE 359

Query: 241 QKLERMDAEKVDLE-------EKLDKMDAEKAELEEKLEQM---DAEKAELE-------- 282
           +K+E ++ EK+ LE       E+++ + +   E+E KL +M   +AE  ELE        
Sbjct: 360 EKVEMVEVEKLQLEMALNGSKEQIEALQSRLKEIEGKLSEMKKLEAENQELELLLGESGK 419

Query: 283 --EKLEK-MDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQR 339
             E L++ ++  +  L E +E   AEK EL M L  ++  +E S+ +L+E   +L ELQ 
Sbjct: 420 QMEDLQRQLNKAQVNLSE-LETRRAEKLELTMCLNGTKKQLETSQNRLKETERKLTELQT 478

Query: 340 ELNLVNESK--------------RIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQ 385
            L+L  ++K                +ES +  +E EA+++  KI SLE+  E ERALS +
Sbjct: 479 LLHLTKDAKEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERALSAK 538

Query: 386 ITVKCQKLEEEQWRMKQEVE-LQQIAKSNAEVK---IKQE-DLEVAAGKLAECQKTIQSL 440
              KC +L++E  ++KQE+E  Q+   +   +K   +KQE +L VAA K AECQ+TI SL
Sbjct: 539 HNSKCNELQDEISKLKQELEHHQETEPAPNHIKGFELKQEKELAVAASKFAECQRTIASL 598

Query: 441 GKQLKSLATLEDFLIDT 457
           G++L+SLAT EDFLI++
Sbjct: 599 GQRLQSLATFEDFLIES 615

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAP9|FPP1_ARATH Filament-like plant protein 1 OS=Arabidopsis thaliana GN=FPP1 PE=2 SV=1

 Score =  176 bits (445), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 123/272 (45%), Positives = 166/272 (61%), Gaps = 17/272 (6%)

Query: 285 LEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLV 344
           LE +  EK +LE K+EK+E EKAEL+++    +D  E S++ L+E   +L E+Q E+ LV
Sbjct: 523 LEAIACEKMELENKLEKLEVEKAELQISFDIIKDKYEESQVCLQEIETKLGEIQTEMKLV 582

Query: 345 NESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEV 404
           NE K  VES   +ME +A+T +AKI SLEE++  ER    ++  KC+ LEEE    K+  
Sbjct: 583 NELKAEVESQTIAMEADAKTKSAKIESLEEDMRKERFAFDELRRKCEALEEEISLHKE-- 640

Query: 405 ELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFS 464
               I   N E KIKQED+E AAGKLA CQKTI SLGKQL+SLATLEDFL DT  IP  +
Sbjct: 641 --NSIKSENKEPKIKQEDIETAAGKLANCQKTIASLGKQLQSLATLEDFLTDTPIIPMAA 698

Query: 465 RAALPIPKTVGESWKLPSNVTFSHKRDLNSPGVVAGTTCPSISKNDGNTPPSSSSSTSSA 524
                   +  ESWK+  N TF  +   N P  +  T      K    +  SS++S + +
Sbjct: 699 NGVS--SSSNSESWKVHKNETFMTR---NHPESIKPT------KETSPSSSSSTASAAVS 747

Query: 525 MP--SNQINPEKNRNGFAKFFSRTKNGIQLEL 554
           MP  +N+ + EKNRNGFA  F+R+K+GI L +
Sbjct: 748 MPVSTNRGSSEKNRNGFATVFTRSKDGIHLAI 779

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C698|FPP6_ARATH Filament-like plant protein 6 OS=Arabidopsis thaliana GN=FPP6 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 135/284 (47%), Gaps = 39/284 (13%)

Query: 283  EKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELN 342
            +++E++ +EK K+   IE ++ +  E E  LA  +   ++++   R A  QL        
Sbjct: 794  QEIEELRSEKEKMAVDIEGLKCQLQESEQLLADIRSQFDSAQRSNRLADTQL-------R 846

Query: 343  LVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQ 402
             + ES R +ES  + +E++   +  KI  LE E+E E+    +  ++C +LEE   R + 
Sbjct: 847  CMTESYRSLESRAADLEIDVNQLKEKIQKLENELEDEKCNHQEAILRCHELEEHIQRHRN 906

Query: 403  EVELQQIAKSNAEVKIKQE-DLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIP 461
               L       A++K KQE +L  AA KLAECQ+TI  LGKQLKS              P
Sbjct: 907  -TSLVAEDDEEADIKSKQERELSAAAEKLAECQETIFVLGKQLKSFRPQ----------P 955

Query: 462  EFSRAALPIPKTVGESW-----------KLPSNVTFSHKRD-LNS-PGVVAGTTCPSISK 508
            E  R+    P+T  ES+            +P N     + D +N  P  +    CPS S+
Sbjct: 956  EQMRS----PQTRNESYSEEEELGTTTTSVPKNYAVVDEGDSVNEVPRFMESPKCPSDSE 1011

Query: 509  -NDGNTPPSS-SSSTSSAMPSNQINPEKNRNGFAKFFSRTKNGI 550
             +D  T PS   S  S +  S    PEK   G ++FFS +K+G 
Sbjct: 1012 TSDTTTSPSRVGSRLSRSGSSTNATPEKASRGISRFFS-SKSGY 1054

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WSY2|FPP4_ARATH Filament-like plant protein 4 OS=Arabidopsis thaliana GN=FPP4 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 49/64 (76%)

Query: 35  LEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRL 94
           +E  E+E + LK E  + ++ELEIR  E+++S ++AE A+KQHL+ +KK+AKLEAEC+RL
Sbjct: 224 IESCEREINTLKYETHVITKELEIRNEEKNMSMRSAEAANKQHLEGVKKIAKLEAECQRL 283

Query: 95  KAMA 98
           + + 
Sbjct: 284 RTLV 287

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	554
224066825	696	predicted protein [Populus trichocarpa]	0.949	0.755	0.607	1e-153
255545398	711	DNA double-strand break repair rad50 ATP	0.947	0.738	0.574	1e-140
224082296	624	predicted protein [Populus trichocarpa]	0.783	0.695	0.581	1e-131
449513331	717	PREDICTED: LOW QUALITY PROTEIN: filament	0.942	0.728	0.508	1e-122
449465451	717	PREDICTED: filament-like plant protein 3	0.940	0.726	0.509	1e-122
75156737	582	RecName: Full=Filament-like plant protei	0.877	0.835	0.480	1e-112
147866605	749	hypothetical protein VITISV_031800 [Viti	0.875	0.647	0.487	1e-111
356512872	673	PREDICTED: filament-like plant protein 3	0.873	0.719	0.432	7e-99
356527538	671	PREDICTED: filament-like plant protein 3	0.851	0.703	0.419	2e-95
357438653	606	Filament-like plant protein [Medicago tr	0.833	0.762	0.487	1e-94

>gi|224066825|ref|XP_002302234.1| predicted protein [Populus trichocarpa] gi|222843960|gb|EEE81507.1| predicted protein [Populus trichocarpa]

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 337/555 (60%), Positives = 409/555 (73%), Gaps = 29/555 (5%)

Query: 1   MKLEFESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRA 60
           +K E E++ +EL+SK   AKSE    +  +L +KLE+LE+EN+ LK+ELL QSEELEIR 
Sbjct: 170 IKSELENQFIELKSKEAAAKSESPAPIVDELCQKLEYLEQENATLKLELLSQSEELEIRT 229

Query: 61  IERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTNDHKSAAASSNCAESL 120
           IERDLS QAAE ASKQHL+SIKKVAKLEAECRRLKA AC+ SS NDHK++AASS   ESL
Sbjct: 230 IERDLSTQAAEAASKQHLESIKKVAKLEAECRRLKAAACKPSSVNDHKTSAASSIYVESL 289

Query: 121 VDSQSDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWASALIAELDQFKNEKAVNRNLSA 180
            DSQSDS E+LNAVE+D RK+  +EP  SE SC DSWAS LI+EL+QFKNEK++NRNL A
Sbjct: 290 PDSQSDSGEKLNAVELDARKVSCSEPYKSEQSCLDSWASTLISELNQFKNEKSINRNLPA 349

Query: 181 SSPEIDLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQSTLAESSLRAELEAMIHRTAEL 239
           SS EIDLMDDFLEMEQLAA+  N++G  + ++  V  QS  AESSLRAELE M  RTAEL
Sbjct: 350 SSVEIDLMDDFLEMEQLAALSENETGTDNSKAEAVIKQSVDAESSLRAELEVMAKRTAEL 409

Query: 240 EQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKI 299
           E                            EKL++++ EK ELEEKL+K++ EK +LEEK+
Sbjct: 410 E----------------------------EKLQKVEGEKFELEEKLQKVEGEKFELEEKL 441

Query: 300 EKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSME 359
           E+++AE  ELEMAL +SQD  EAS+LQL EA  +L ELQ EL L NESK+ +E  + SME
Sbjct: 442 ERIKAEMDELEMALNESQDRNEASQLQLSEAQQKLVELQEELLLTNESKQQIEFQLVSME 501

Query: 360 MEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIK 419
            EA+TM+AK+NS++ E+E ER LS +I +K  +LEEE  R KQE ELQQ   S+ E KIK
Sbjct: 502 AEARTMSAKVNSIQGEIEKERVLSAEIALKYHELEEELSRKKQEEELQQNVSSSGEPKIK 561

Query: 420 QEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRAALPIPKTVGESWK 479
           QED +VAA KLAECQKTI SLG QLKSLATL+DFLIDTASIPEFS     IPK  GE WK
Sbjct: 562 QEDFDVAANKLAECQKTIASLGNQLKSLATLKDFLIDTASIPEFSAGGSAIPKGNGEPWK 621

Query: 480 LPSNVTFSHKRDLNSPGVVAGTTCPSISKNDGNTPPSSSSSTSSAMPSNQINPEKNRNGF 539
           L SN TFS KRD  S  +    + P++  N+G++PPS SSS SSA+ SN ++ EKNRNGF
Sbjct: 622 LHSNETFSPKRDSGSLRIDNENSGPAVKINEGDSPPSVSSSASSAVSSNHVSSEKNRNGF 681

Query: 540 AKFFSRTKNGIQLEL 554
           AKFFSR+KNGIQLE+
Sbjct: 682 AKFFSRSKNGIQLEI 696

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545398|ref|XP_002513759.1| DNA double-strand break repair rad50 ATPase, putative [Ricinus communis] gi|223546845|gb|EEF48342.1| DNA double-strand break repair rad50 ATPase, putative [Ricinus communis]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 327/569 (57%), Positives = 407/569 (71%), Gaps = 44/569 (7%)

Query: 2   KLEFESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAI 61
           K EFES+LLEL+ KAE A SE +  + PDL  KLE+LEK+N++LK+ELL  SEELE+R I
Sbjct: 171 KSEFESQLLELKIKAEAANSESTSQIVPDLCHKLEYLEKDNASLKLELLSLSEELEVRTI 230

Query: 62  ERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTNDHKSAAASSNCAESLV 121
           ERDLS QAAETASKQ+L+SIKKVAKLEAECRRLKA A ++S  NDHK++ ASS   ESL 
Sbjct: 231 ERDLSTQAAETASKQNLESIKKVAKLEAECRRLKATAFKSSLLNDHKTSTASSMYVESLT 290

Query: 122 DSQSDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWASALIAELDQFKNEKAVNRNLSAS 181
           DSQSD                            +SWASALIA LDQFKNEK  NRNL +S
Sbjct: 291 DSQSD----------------------------NSWASALIAGLDQFKNEKNANRNLPSS 322

Query: 182 SPEIDLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQSTLAESSLRAELEAMIHRTAELE 240
           S EIDLMDDFLEME+LAA+P  KSG  + +   V   ST +ESSLRAELE MI+RTAELE
Sbjct: 323 SIEIDLMDDFLEMERLAALPETKSGTLNSKPEAVAKPSTDSESSLRAELEIMINRTAELE 382

Query: 241 QKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIE 300
           +KL++M+ EK+ LE KL KM+ EK +LE  L++M+ E  ELE  L+KM+AE  +LE  ++
Sbjct: 383 EKLQKMEGEKLKLEAKLQKMEGEKLDLEANLQKMEEENLELEANLQKMEAEYLELETNLQ 442

Query: 301 KMEA--------------EKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNE 346
           KME               E+ ELEM L  SQ+  E   +QLREA ++LE+LQ+EL+  NE
Sbjct: 443 KMEGEKFELEEKLENIQVERTELEMTLTISQEKSEEFLIQLREAELRLEKLQKELSKANE 502

Query: 347 SKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVEL 406
           SK+ +ES +  ME+EA+TM +K+N LE EVE ER LS +  VKC+ LEEE    K E++L
Sbjct: 503 SKQQIESQLVHMEVEARTMASKVNLLEAEVEKERVLSAETGVKCKALEEELSEKKLEIDL 562

Query: 407 QQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRA 466
           Q+ A SN+E KIKQEDL+VAAGKLAECQKTI SLGKQLKSLATLEDFLIDTASIPEFS  
Sbjct: 563 QKSASSNSEPKIKQEDLDVAAGKLAECQKTIASLGKQLKSLATLEDFLIDTASIPEFSAG 622

Query: 467 ALPIPKTVGESWKLPSNVTFSHKRDLNSPGVVAGTTCPSISKNDGNTPPSSSSSTSSAMP 526
              I +  GE WKL S+ TFS KRD +S  + +  + PS+ K +G +PPSSSSS+S++  
Sbjct: 623 GSLIHRASGEPWKLHSSETFSPKRDSSSSRLASENSGPSVHKIEGRSPPSSSSSSSTSSA 682

Query: 527 S-NQINPEKNRNGFAKFFSRTKNGIQLEL 554
           + N ++ +KNRNGFAKFFSR+K+GIQLE+
Sbjct: 683 TLNHMSSDKNRNGFAKFFSRSKDGIQLEI 711

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082296|ref|XP_002306637.1| predicted protein [Populus trichocarpa] gi|222856086|gb|EEE93633.1| predicted protein [Populus trichocarpa]

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 276/475 (58%), Positives = 339/475 (71%), Gaps = 41/475 (8%)

Query: 1   MKLEFESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRA 60
           +K E E++ +EL++K   A SE    +  +L +KLE+LE+EN+ LK+ELL QSEELE R 
Sbjct: 170 IKSELENQFIELKTKEAAANSESPALIVDELCQKLEYLEQENATLKVELLSQSEELEART 229

Query: 61  IERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTNDHKSAAASSNCAESL 120
           +ERDLS QAAETASKQHL+SIKKV +LEAECRRLKAMAC++SS NDHK++AASS   ES 
Sbjct: 230 VERDLSTQAAETASKQHLESIKKVVRLEAECRRLKAMACKSSSVNDHKTSAASSVYVESF 289

Query: 121 VDSQSDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWASALIAELDQFKNEKAVNRNLSA 180
            DSQSDS E+LNAV +D RK+  + P  SE  CSDSWASALI+E+DQFKNEK++NRNL A
Sbjct: 290 TDSQSDSGEKLNAVVLDARKVSCSGPYKSEQICSDSWASALISEVDQFKNEKSINRNLPA 349

Query: 181 SSPEIDLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQSTLAESSLRAELEAMIHRTAEL 239
           S  EIDLMDDFLEME+LAA+P N++G  +  + +   QS  AESSLRAE E +I R+AEL
Sbjct: 350 SPVEIDLMDDFLEMERLAALPENEAGTDNSRAEDAAKQSIDAESSLRAEREFIIKRSAEL 409

Query: 240 EQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKI 299
           E+KL++M+ EK  LEEKL KM+ E   LEEKLE+                          
Sbjct: 410 EEKLQKMEEEKFVLEEKLRKMEGETFVLEEKLEE-------------------------- 443

Query: 300 EKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSME 359
             ++AE+ ELEMAL +SQD  EAS+LQLREA  +L ELQ EL++ NESK+ +ES + SME
Sbjct: 444 --IKAERDELEMALTESQDKNEASQLQLREAQQKLVELQEELSMANESKQQIESRLVSME 501

Query: 360 MEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIK 419
           +EA+TM+AK+NSLE E+E ER LS  I  K Q+LEE   R KQE ELQQ           
Sbjct: 502 VEARTMSAKVNSLEGEIEKERVLSTGIAAKYQELEENLSRKKQEEELQQT---------- 551

Query: 420 QEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRAALPIPKTV 474
             DL+VAA K AECQ+TI SLGKQLKSLATLEDFLIDTASIPEFS     IPK +
Sbjct: 552 --DLDVAAKKHAECQETIASLGKQLKSLATLEDFLIDTASIPEFSAGGSAIPKVM 604

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449513331|ref|XP_004164297.1| PREDICTED: LOW QUALITY PROTEIN: filament-like plant protein 3-like [Cucumis sativus]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 290/570 (50%), Positives = 383/570 (67%), Gaps = 48/570 (8%)

Query: 1   MKLEFESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRA 60
           +K++ E +LL LQS A+TAK E S  +DP L + LE L++EN+AL+ EL  Q  ELE R 
Sbjct: 180 IKVDLERQLLALQSIADTAKCE-SPKVDPSLGKMLELLKRENAALRHELHAQYRELETRT 238

Query: 61  IERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTNDHKSAAASSNCAESL 120
           IERDLS Q AETASKQHL+SIKK+AKLEAECRRLK M+C+ S   DHKS AAS+   ESL
Sbjct: 239 IERDLSTQTAETASKQHLESIKKMAKLEAECRRLKFMSCKPSFV-DHKSIAASTISIESL 297

Query: 121 VDSQSDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWASALIAELDQFKNEKAVNRNLSA 180
            D+QSD+                  P           AS L+AEL+Q  NEKAV+ NL  
Sbjct: 298 TDTQSDN------------------PR----------ASTLLAELNQLGNEKAVSSNL-P 328

Query: 181 SSPEIDLMDDFLEMEQLAAMPNNKSGKHVESGNVTTQSTLAESSLRAELEAMIHRTAELE 240
           SS E+DLMDDFLEME+LA++P   +GK  +      +ST  E++LR ELEA+ H  + +E
Sbjct: 329 SSLELDLMDDFLEMERLASLPETDTGKSRQESEAFPRSTAEENALRTELEALRHERSLME 388

Query: 241 QKLERMDAEKVDLEEKLDKMDAEKA--------------ELEEKLEQMDAEKAELEEKLE 286
           +KL  M+  K++LEEKL +M+ EK               E  + L +M+ ++ EL +KL 
Sbjct: 389 KKLGEMEEAKIELEEKLKQMEVEKDELEERLEMMEIERDEANQMLAKMETKQYELGQKLV 448

Query: 287 KMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNE 346
           KM+ EK ++ EK+ K+E +K ELE AL++SQ+SVE S+ QL+E  M+LE+LQ EL + +E
Sbjct: 449 KMEEEKVEMGEKLMKLETQKDELETALSRSQNSVEISQFQLKETQMKLEKLQNELTIADE 508

Query: 347 SKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVEL 406
           SK  +ES + SME E+ TM+AK+  LE +++ ERA +M +TVKCQ LEEE  R+KQ+ ++
Sbjct: 509 SKLRIESQLISMEAESLTMSAKVEMLETDIQKERASAMALTVKCQVLEEELSRLKQDEKI 568

Query: 407 QQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRA 466
            Q   S  E+KIKQEDL VAAGKLAECQKTI SLG QLKSLA LEDFLIDT  +PEF+ A
Sbjct: 569 SQSEISKNELKIKQEDLAVAAGKLAECQKTIASLGNQLKSLAALEDFLIDTTHLPEFT-A 627

Query: 467 ALPIPKTV-GESWKLPSNVTFSHKRDLNSPGVVAGTTCPSISKN-DGNTPPSSSSSTSSA 524
           +  +  T+ GE     S  T S KRD +   VV  ++ P +SKN D + P SSSS++SS 
Sbjct: 628 SESLNITIDGEEQCKHSYGTLSPKRDSDFTKVVDDSSEPLMSKNGDDSPPSSSSSTSSSM 687

Query: 525 MPSNQINPEKNRNGFAKFFSRTKNGIQLEL 554
           + S+ +N EKNRNGFAKFFSRTK+GI+LE+
Sbjct: 688 ITSHIVNSEKNRNGFAKFFSRTKSGIKLEI 717

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465451|ref|XP_004150441.1| PREDICTED: filament-like plant protein 3-like [Cucumis sativus]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 290/569 (50%), Positives = 382/569 (67%), Gaps = 48/569 (8%)

Query: 2   KLEFESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAI 61
           K++ E +LL LQS A+TAK E S  +DP L + LE L++EN+AL+ EL  Q  ELE R I
Sbjct: 181 KVDLERQLLALQSIADTAKCE-SPKVDPSLGKMLELLKRENAALRHELHAQYRELETRTI 239

Query: 62  ERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTNDHKSAAASSNCAESLV 121
           ERDLS Q AETASKQHL+SIKK+AKLEAECRRLK M+C+ S   DHKS AAS+   ESL 
Sbjct: 240 ERDLSTQTAETASKQHLESIKKMAKLEAECRRLKFMSCKPSFV-DHKSIAASTISIESLT 298

Query: 122 DSQSDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWASALIAELDQFKNEKAVNRNLSAS 181
           D+QSD+                  P           AS L+AEL+Q  NEKAV+ NL  S
Sbjct: 299 DTQSDN------------------PR----------ASTLLAELNQLGNEKAVSSNL-PS 329

Query: 182 SPEIDLMDDFLEMEQLAAMPNNKSGKHVESGNVTTQSTLAESSLRAELEAMIHRTAELEQ 241
           S E+DLMDDFLEME+LA++P   +GK  +      +ST  E++LR ELEA+ H  + +E+
Sbjct: 330 SLELDLMDDFLEMERLASLPETDTGKSRQESEAFPRSTAEENALRTELEALRHERSLMEK 389

Query: 242 KLERMDAEKVDLEEKLDKMDAEKA--------------ELEEKLEQMDAEKAELEEKLEK 287
           KL  M+  K++LEEKL +M+ EK               E  + L +M+ ++ EL +KL K
Sbjct: 390 KLGEMEEAKIELEEKLKQMEVEKDELEERLEMMEIERDEANQMLAKMETKQYELGQKLVK 449

Query: 288 MDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNES 347
           M+ EK ++ EK+ K+E +K ELE AL++SQ+SVE S+ QL+E  M+LE+LQ EL + +ES
Sbjct: 450 MEEEKVEMGEKLMKLETQKDELETALSRSQNSVEISQFQLKETQMKLEKLQNELTIADES 509

Query: 348 KRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQ 407
           K  +ES + SME E+ TM+AK+  LE +++ ERA +M +TVKCQ LEEE  R+KQ+ ++ 
Sbjct: 510 KLRIESQLISMEAESLTMSAKVEMLETDIQKERASAMALTVKCQVLEEELSRLKQDEKIS 569

Query: 408 QIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRAA 467
           Q   S  E+KIKQEDL VAAGKLAECQKTI SLG QLKSLA LEDFLIDT  +PEF+ A+
Sbjct: 570 QSEISKNELKIKQEDLAVAAGKLAECQKTIASLGNQLKSLAALEDFLIDTTHLPEFT-AS 628

Query: 468 LPIPKTV-GESWKLPSNVTFSHKRDLNSPGVVAGTTCPSISKN-DGNTPPSSSSSTSSAM 525
             +  T+ GE     S  T S KRD +   VV  ++ P +SKN D + P SSSS++SS +
Sbjct: 629 ESLNITIDGEEQCKHSYGTLSPKRDSDFTKVVDDSSEPLMSKNGDDSPPSSSSSTSSSMI 688

Query: 526 PSNQINPEKNRNGFAKFFSRTKNGIQLEL 554
            S+ +N EKNRNGFAKFFSRTK+GI+LE+
Sbjct: 689 TSHIVNSEKNRNGFAKFFSRTKSGIKLEI 717

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75156737|sp|Q8LLE5.1|FPP_SOLLC RecName: Full=Filament-like plant protein; Short=LeFPP gi|22652089|gb|AAN03605.1|AF405309_1 coiled-coil protein [Solanum lycopersicum]

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 265/551 (48%), Positives = 344/551 (62%), Gaps = 65/551 (11%)

Query: 2   KLEFESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAI 61
           K   E +LL+LQ++ E  K+E     DPD+  +L++LEKEN+ALK+EL+  SE LEIR I
Sbjct: 86  KTALEKQLLKLQTQVEAGKAEMPTSTDPDILVRLKYLEKENAALKIELVSCSEVLEIRTI 145

Query: 62  ERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTNDHKSAAASSNCAESLV 121
           ERDLS QAAETASKQ L+SIKK+ KLE ECR+L+AMA ++S  ND +S+A SS   +S+ 
Sbjct: 146 ERDLSTQAAETASKQQLESIKKLTKLEVECRKLQAMARKSSPFNDQRSSAVSSFYVDSVT 205

Query: 122 DSQSDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWASALIAELDQFKNEKAVNRNLSAS 181
           DSQSDS ERLN V+ D  KM   E    EPSCS+SWASALIAELDQFKNEKA+ + L+A 
Sbjct: 206 DSQSDSGERLNTVDNDALKMSKLETREYEPSCSNSWASALIAELDQFKNEKAMPKTLAAC 265

Query: 182 SPEIDLMDDFLEMEQLAAMPN--NKSGKHVESGNVTTQSTLAESSLRAELEAMIHRTAEL 239
           S EID+MDDFLEMEQLAA+    NK+   V S  V   S   E+ L AE  ++  R  EL
Sbjct: 266 SIEIDMMDDFLEMEQLAALSETANKT-PSVTSDAVPHDSPNIENPLAAEYNSISQRVVEL 324

Query: 240 EQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKI 299
           EQKLE+++AEK +LE   +             E  DA K                     
Sbjct: 325 EQKLEKIEAEKAELENAFN-------------ESQDALKV-------------------- 351

Query: 300 EKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSME 359
                              S++  E Q R     LE LQ+EL++VNESK ++E  +  ME
Sbjct: 352 ------------------SSLQLKETQTR-----LEGLQKELDVVNESKELLEFQLYGME 388

Query: 360 MEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIK 419
           +EA+TM+  I+SL+ EVE E++LS ++  KC +LE +  +  QE E QQ + SN+E+KIK
Sbjct: 389 VEARTMSVNIDSLKTEVEKEKSLSSEMEAKCHELENDLRKKSQEAEAQQTSGSNSELKIK 448

Query: 420 QEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRAALPIPKTVGESWK 479
           QEDL VAA KLAECQKTI SLGKQL+SLATLEDFL DTA++P        + K  GE WK
Sbjct: 449 QEDLAVAADKLAECQKTIASLGKQLQSLATLEDFLTDTANLP---GGGAVVAKAGGELWK 505

Query: 480 LPSNVTFSHKRDLNSPGVVAGTTCPSISKNDGNTPPSSSSSTSSAMPSNQINPEKNRNGF 539
           L  N TF+ KRD + P  V      S ++N+G +P SSSSS++S+         K++NGF
Sbjct: 506 LHVNETFTPKRD-SDPTKVEENVSHSTNENEGESPASSSSSSTSSTTQASTG--KSKNGF 562

Query: 540 AKFFSRTKNGI 550
            K FSR+K+G+
Sbjct: 563 GKLFSRSKSGV 573

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866605|emb|CAN83687.1| hypothetical protein VITISV_031800 [Vitis vinifera]

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 279/572 (48%), Positives = 355/572 (62%), Gaps = 87/572 (15%)

Query: 2   KLEFESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAI 61
           K E ES+++E+Q++ +TAK+E    +DP L  KL   EKEN+ALK++LL + EELEIR I
Sbjct: 144 KSELESQIVEIQAQLQTAKAEXVATVDPGLELKLGAAEKENAALKLQLLSREEELEIRTI 203

Query: 62  ERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTNDHKSAAASSNCAESLV 121
           E++LS QAAETASKQ+L+SIKKVAKLEAECRRLKAMA +ASS NDHKS  ASS C ESL 
Sbjct: 204 EQELSTQAAETASKQNLESIKKVAKLEAECRRLKAMARKASSANDHKSXTASSVCVESLT 263

Query: 122 DSQSDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWASALIAELDQFKNEKAVNRNLSAS 181
           DSQSDS ERL A+E+D RKM G + N  EPS SDSWAS LI ELD+FKNEK + +NL A 
Sbjct: 264 DSQSDSGERLLALEIDTRKMTGLDTNECEPSRSDSWASGLIQELDRFKNEKPLVKNLMAP 323

Query: 182 SPEIDLMDDFLEMEQLAAMPN--NKSGKHVESGNVTTQSTLA-ESSLRAELEAMIHRTAE 238
           S E DLMDDFLEME+LAA+P   N+S + +ESG ++ +     ES L+A+LEAMI RTAE
Sbjct: 324 SVEXDLMDDFLEMERLAALPETENRS-RCLESGAISDKHIGGSESPLKAQLEAMIDRTAE 382

Query: 239 LEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEK 298
           LE+KLE                                          K           
Sbjct: 383 LEEKLE------------------------------------------K----------- 389

Query: 299 IEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKR--------- 349
              MEAEK EL+MAL++ Q+ +E S+ +L+E   +L ELQ +L L +ESKR         
Sbjct: 390 ---MEAEKMELDMALSECQNQLETSQGRLKEVEEKLVELQTQLALASESKRNAEEEIQAT 446

Query: 350 -----IVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEV 404
                + ES +  +E E +TM +K+ SLEEEVE ERALS +   KC+K E+E  RMK+E 
Sbjct: 447 NAKREVAESRLIXVEAEIKTMLSKVLSLEEEVEKERALSAEAASKCRKFEDELSRMKRET 506

Query: 405 ELQQIAKSNAEVKIKQE-DLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEF 463
           EL+ +A SN E+KIKQE +L VAA KLAECQKTI SLG+QLKSLATLED L+D+    + 
Sbjct: 507 ELRNLASSNGELKIKQEKELAVAASKLAECQKTIASLGRQLKSLATLEDLLLDSEKPLQP 566

Query: 464 SRAALPIPKTVGESWKLPSNVTFSHKRDLNSPGVVAGTTCPSISKNDGNTPPSSSSSTSS 523
               L  PK   E W L    ++  K+DL S          S ++ D +     S   +S
Sbjct: 567 MSEGLHHPKDGAEQWTLHPGNSYIPKKDLES----------SKTEPDHSASIKKSKDEAS 616

Query: 524 AMPSNQI--NPEKNRNGFAKFFSRTKNGIQLE 553
            +P N +    EK+RNGF KFF R+KN I+ E
Sbjct: 617 TLPLNPVVMTSEKSRNGFGKFFPRSKNAIRAE 648

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512872|ref|XP_003525139.1| PREDICTED: filament-like plant protein 3-like [Glycine max]

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 246/569 (43%), Positives = 339/569 (59%), Gaps = 85/569 (14%)

Query: 2   KLEFESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAI 61
           K E E ++ EL+++ +T K++ +  +  DL ++LE ++KENS+LK EL  + EELE R +
Sbjct: 160 KSELERKVAELEAQLQTVKADAAASIRFDLHQRLEAVQKENSSLKHELQSRLEELEFRIV 219

Query: 62  ERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTNDHKSAAASSNCAESLV 121
           ERDL +QAAETASKQHL+S+KKVAKLEAECRRLKAM  +  S NDH+S  ASS  AES  
Sbjct: 220 ERDLRSQAAETASKQHLESVKKVAKLEAECRRLKAMTRKTFSVNDHRSVTASSVYAESFT 279

Query: 122 DSQSDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWASALIAELDQFKNEKAVNRNLSAS 181
           DS SDS +RL AVE D+RK+GG E N  E S  DS +S+L+ ELDQFKNEK   +N +  
Sbjct: 280 DSMSDSGDRLLAVESDMRKLGGWEMNECELSRFDSCSSSLVMELDQFKNEKGNGKNHAVP 339

Query: 182 SPEIDLMDDFLEMEQLAAMPNNKSG-KHVESGNVTTQSTLAESSLRAELEAMIHRTAELE 240
           S EI+LMDDFLEME+LAA+P+ +SG   V  G  + QS + +++++AE+EAMI +  ELE
Sbjct: 340 STEINLMDDFLEMERLAALPDGESGSSFVREGVASDQSNVGQATMKAEIEAMIQKDDELE 399

Query: 241 QKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIE 300
           +KL +M+AE                     +E M  +  ELE+KL              +
Sbjct: 400 KKLGKMEAE---------------------MEAMIQKNVELEKKL--------------K 424

Query: 301 KMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNES------------- 347
           KMEA K E++M L K Q  +E SE Q REA +++ E Q +L L  +S             
Sbjct: 425 KMEAGKVEVDMVLTKYQMQLETSESQTREAELKVAEFQTQLALAKKSNQEACEELKATKA 484

Query: 348 -KRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVEL 406
            K IVES +   + E + + ++I SLEE+++ ERALS + ++K  KLE+E  +MK +V +
Sbjct: 485 KKAIVESTLKLTQTEVEELISQIRSLEEKIQKERALSAKNSIKWGKLEDELSKMKHKVLV 544

Query: 407 QQIAK------SNAEVKIKQE-DLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTAS 459
           QQ  +       N ++K+KQE +L  AA + AECQKTI SLG+QLKSLATLEDFL+D+ +
Sbjct: 545 QQDTEIKHRECVNLDLKLKQEKELARAASRFAECQKTIASLGQQLKSLATLEDFLLDSDN 604

Query: 460 IPEFSRAALPIPKTVGESWKLPSNVTFSHKRDLNSPGVVAGTTCPSISKNDGNTPPSSSS 519
             E +       +  GE  KL       H  DL+ P            K D  +P S +S
Sbjct: 605 PMESTCQVTKGHQNGGEHLKL-------HHSDLSLP------------KKDSESPISFNS 645

Query: 520 STSSAMPSNQINPEKNRNGFAKFFSRTKN 548
                     I  EK+ NGF KF  R+K+
Sbjct: 646 P---------ITNEKSSNGFGKFIPRSKS 665

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527538|ref|XP_003532366.1| PREDICTED: filament-like plant protein 3-like [Glycine max]

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 240/572 (41%), Positives = 330/572 (57%), Gaps = 100/572 (17%)

Query: 2   KLEFESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAI 61
           K E E ++ E +++ +TAK++ +  +  DL ++LE ++ ENS+LK EL  + EELE R +
Sbjct: 178 KSELERKVAEFEAQLQTAKADAAASIHFDLHQRLEAVQNENSSLKHELQSRLEELEFRIV 237

Query: 62  ERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTNDHKSAAASSNCAESLV 121
           ERDLS+QAAETASKQHL+S+KKVAKLEAECRRLKAM  +  S NDH+S  ASS   ES  
Sbjct: 238 ERDLSSQAAETASKQHLESVKKVAKLEAECRRLKAMTRKTFSVNDHRSVTASSVYVESFT 297

Query: 122 DSQSDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWASALIAELDQFKNEKAVNRNLSAS 181
           DS SDS   +N  E ++R+              DS +S+ + ELDQFKNEKA  +N   S
Sbjct: 298 DSMSDSGWEMN--ECELRRF-------------DSCSSSFVMELDQFKNEKANGKNHVVS 342

Query: 182 SPEIDLMDDFLEMEQLAAMPNNKSGKHVESGNVTT-QSTLAESSLRAELEAMIHRTAELE 240
           S EI+LMDDFLEME+LA +P+++SG +     V + QS + +++++AE+EAMI + AELE
Sbjct: 343 STEINLMDDFLEMERLATLPDSESGSNFVRKEVASDQSNVGQATIKAEIEAMIEKNAELE 402

Query: 241 QKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIE 300
           +KL +M+AE                     +E M  +  ELE+KL              +
Sbjct: 403 KKLGKMEAE---------------------MEGMIQKNVELEKKL--------------K 427

Query: 301 KMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNES------------- 347
           KMEA K E++M L K Q  +E SE Q+REA +++ E Q +L L  +S             
Sbjct: 428 KMEAGKVEVDMVLTKYQMQLETSESQIREAELKVAEFQTQLALAKKSNQEACEELKATKA 487

Query: 348 -KRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVEL 406
            K IVES +   E E + + +KI SLEEE+  ERALS + ++KC  LE E  +MK +V++
Sbjct: 488 KKEIVESTLKHTETEVEELISKIRSLEEEIHKERALSTENSIKCGNLEVELSKMKHKVQV 547

Query: 407 QQ------IAKSNAEVKIKQE-DLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTAS 459
           QQ          N ++K+KQE DL +AA + AECQKTI SLG+QLKSLATLEDFL+D+ +
Sbjct: 548 QQDTEIKHTEGVNLDLKLKQEKDLALAASRFAECQKTIASLGQQLKSLATLEDFLLDSDN 607

Query: 460 IPEFSRAALPIPKTVGESWKLPSNVTFSHKRDLNSPGVVAGTTCPSISKNDGNTPPSSSS 519
             E +       +  GE  K        H  DL+ P            K D  +P S +S
Sbjct: 608 PMESTCEVTKGHQNGGEHLK-------PHHSDLSLP------------KKDSESPVSLNS 648

Query: 520 STSSAMPSNQINPEKNRNGFAKFFSRTKNGIQ 551
           S         I  EK+RNGF KF  R+K G  
Sbjct: 649 S---------ITNEKSRNGFGKFIPRSKRGTH 671

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438653|ref|XP_003589602.1| Filament-like plant protein [Medicago truncatula] gi|355478650|gb|AES59853.1| Filament-like plant protein [Medicago truncatula]

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 257/527 (48%), Positives = 324/527 (61%), Gaps = 65/527 (12%)

Query: 59  RAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTNDHKSAAASSNCAE 118
           R +ERDLS QAAETASKQHL+SIKKVAKLE+ECRRLK +A     + DHKS A+SS C E
Sbjct: 90  RTVERDLSTQAAETASKQHLESIKKVAKLESECRRLKTIA-----SKDHKSIASSSFCVE 144

Query: 119 SLVDSQSDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWASALIAELDQFKNEKAVNRNL 178
           SL DSQSDS ERL AV+ DI KM G+E N  EPSCSDSWASALIAELDQFKNEK   +  
Sbjct: 145 SLTDSQSDSTERLTAVDCDILKMNGSE-NRCEPSCSDSWASALIAELDQFKNEKCCRQAD 203

Query: 179 SASSPEIDLMDDFLEMEQLAAMPNNKSG-KHVESGNVTTQSTLAESSLRAELEAMIHRTA 237
            +SS +IDLMDDFLEME+LAA+P  K+    VE   V  +    ES+LRAE + M  +  
Sbjct: 204 PSSSLKIDLMDDFLEMERLAALPETKNASSFVEELVVADKCVDKESTLRAEFDIMTQQMD 263

Query: 238 ELEQKLERMDAEKVDLEEKLDKMD--AEKAELE-----EKLEQMDAE-------KAELEE 283
           EL+ KLE++ A+K +LE  L K +   E++ L+     +KLE++  E       K  +E 
Sbjct: 264 ELKGKLEKVQADKAELEIALMKSEECIEESHLQLKEAVQKLEELQIELENAYKSKQTIEN 323

Query: 284 KLEKMDAEKAKLEEKIEKMEA----EKAELE---MALAKSQDSVEASELQLREATMQLEE 336
           +L  M+A+   L  K+  +EA    E+ ELE     L   +  V+  +    E  ++ E 
Sbjct: 324 RLMSMEADSHTLSSKVNLLEAEVDKEREELESKSAMLGLLEADVDKEKNMSHEIAIKCEG 383

Query: 337 LQRELNLVNESK---------RIVESNVSSMEMEAQT---------MTAKINSLEEEVEM 378
           L+ EL    ESK          IV+   +S E+ A+            AK++ LE EVE 
Sbjct: 384 LEEEL----ESKCAKLELLESEIVKERAASDEIAAKCKDLVEEFERKCAKVDFLEAEVEK 439

Query: 379 ERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQ 438
           ERA+S +I VKC++LEEE         L+  A    E KIKQEDL +AAGKLAECQKTI 
Sbjct: 440 ERAMSEEIAVKCRELEEEI--------LRPTASLYGEKKIKQEDLALAAGKLAECQKTIA 491

Query: 439 SLGKQLKSLATLEDFLIDTASIPEFSRAALP--IPKTVGESWKLPSNVTFSHKRDLNSPG 496
           SLG QLKSLATLEDFLIDTASIP     A P  I    GE W++ SN TFS KRD  S  
Sbjct: 492 SLGNQLKSLATLEDFLIDTASIP-----ASPAIIAHAGGEMWRMHSNGTFSPKRDSTSSR 546

Query: 497 VVAGTTCPSISKNDGNTPPSSSSSTSSAMPSNQINPEKNRNGFAKFF 543
           +  G++  S++K + ++P SS+SSTSSA   N  + EK R GFAK F
Sbjct: 547 LADGSSGASLNKYEESSPLSSTSSTSSATLPNHASSEKGRIGFAKIF 593

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	554
TAIR|locus:2204755	779	AT1G77580 [Arabidopsis thalian	0.402	0.286	0.441	5.6e-67
TAIR|locus:2824556	982	AT1G19835 "AT1G19835" [Arabido	0.393	0.221	0.3	3.7e-32
TAIR|locus:2204990	1054	AT1G47900 "AT1G47900" [Arabido	0.404	0.212	0.288	2.2e-24
TAIR|locus:2135154	996	AT4G36120 "AT4G36120" [Arabido	0.099	0.055	0.509	5.5e-19
TAIR|locus:2090684	704	AT3G19370 [Arabidopsis thalian	0.240	0.188	0.279	8.4e-11
UNIPROTKB|P49454	3210	CENPF "Centromere protein F" [	0.364	0.062	0.255	9e-09
ASPGD|ASPL0000042966	1153	AN2480 [Emericella nidulans (t	0.346	0.166	0.240	2.9e-07
DICTYBASE|DDB_G0286985	1024	zipA "zipper-like domain-conta	0.765	0.414	0.207	5e-07
TAIR|locus:2045412	1333	AT2G32240 "AT2G32240" [Arabido	0.341	0.141	0.220	5e-07
UNIPROTKB|O42263	2954	cenpe "Kinesin-related protein	0.236	0.044	0.259	7.9e-07

TAIR|locus:2204755 AT1G77580 [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 5.6e-67, Sum P(2) = 5.6e-67
 Identities = 106/240 (44%), Positives = 140/240 (58%)

Query:   317 QDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEV 376
             +D  E S++ L+E   +L E+Q E+ LVNE K  VES   +ME +A+T +AKI SLEE++
Sbjct:   555 KDKYEESQVCLQEIETKLGEIQTEMKLVNELKAEVESQTIAMEADAKTKSAKIESLEEDM 614

Query:   377 EMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKT 436
               ER    ++  KC+ LEEE    K+      I   N E KIKQED+E AAGKLA CQKT
Sbjct:   615 RKERFAFDELRRKCEALEEEISLHKEN----SIKSENKEPKIKQEDIETAAGKLANCQKT 670

Query:   437 IQSLGKQLKSLATLEDFLIDTASIPEFSRAALPIPKTVGESWKLPSNVTFSHKRDLNSPG 496
             I SLGKQL+SLATLEDFL DT  IP  +        +  ESWK+  N TF  +   N P 
Sbjct:   671 IASLGKQLQSLATLEDFLTDTPIIPMAANGVSSSSNS--ESWKVHKNETFMTR---NHPE 725

Query:   497 VVAGT--TCPSISKNDGNXXXXXXXXXXXAMPSNQINPEKNRNGFAKFFSRTKNGIQLEL 554
              +  T  T PS S +  +            + +N+ + EKNRNGFA  F+R+K+GI L +
Sbjct:   726 SIKPTKETSPSSSSSTASAAVSM------PVSTNRGSSEKNRNGFATVFTRSKDGIHLAI 779

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2824556 AT1G19835 "AT1G19835" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 3.7e-32, Sum P(3) = 3.7e-32
 Identities = 72/240 (30%), Positives = 116/240 (48%)

Query:   316 SQDSVEASELQLREATMQLEELQR-------ELNLVNESKRIVESNVSSMEMEAQTMTAK 368
             ++  ++ +E  L E    LE  Q+       +L  + ES R +E+  S +E+E  ++  K
Sbjct:   755 TKTKLQETEKLLAEVKSDLESAQKSNGMGETQLKCMVESYRSLETRSSELEIELTSLKGK 814

Query:   369 INSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAG 428
             I +LE+E+  E+    +   KCQ+LEE+  R  Q      + + + + K +  +L  AA 
Sbjct:   815 IENLEDELHDEKENHREALAKCQELEEQLQRNNQNCPNCSVIEDDPKSK-QDNELAAAAE 873

Query:   429 KLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRAAL-PIPKTVGESWKLPSNVTFS 487
             KLAECQ+TI  LGKQLKS+    +     AS P   + AL P  +    S   P +   S
Sbjct:   874 KLAECQETILLLGKQLKSMCPQTE---QVASSPSQEQQALNPEEEEYATSTN-PQDSKLS 929

Query:   488 HKRDLNSPGVVAGTTCPSISKNDGNXXXXXXXXXXXAMPSNQINPEKNRNGFAKFFSRTK 547
                D ++P +    + P  SK+              +  S+ + PEK+  GF++FFS TK
Sbjct:   930 SPSDKDTPSMNTMKS-PVASKH-------RHTKSNSSSSSSGLTPEKHSRGFSRFFS-TK 980

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2204990 AT1G47900 "AT1G47900" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
 Identities = 70/243 (28%), Positives = 111/243 (45%)

Query:   320 VEASELQLREATMQLEELQR-------ELNLVNESKRIVESNVSSMEMEAQTMTAKINSL 372
             ++ SE  L +   Q +  QR       +L  + ES R +ES  + +E++   +  KI  L
Sbjct:   817 LQESEQLLADIRSQFDSAQRSNRLADTQLRCMTESYRSLESRAADLEIDVNQLKEKIQKL 876

Query:   373 EEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQE-DLEVAAGKLA 431
             E E+E E+    +  ++C +LEE   R +    L       A++K KQE +L  AA KLA
Sbjct:   877 ENELEDEKCNHQEAILRCHELEEHIQRHRN-TSLVAEDDEEADIKSKQERELSAAAEKLA 935

Query:   432 ECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRAALPIPKTVGESW-KLPSNVTFSHKR 490
             ECQ+TI  LGKQLKS     + +      P+    +    + +G +   +P N     + 
Sbjct:   936 ECQETIFVLGKQLKSFRPQPEQMRS----PQTRNESYSEEEELGTTTTSVPKNYAVVDEG 991

Query:   491 D-LNS-PGVVAGTTCPSISKNDGNXXXXXXXXXXXAMPSNQIN--PEKNRNGFAKFFSRT 546
             D +N  P  +    CPS S+               +   +  N  PEK   G ++FFS +
Sbjct:   992 DSVNEVPRFMESPKCPSDSETSDTTTSPSRVGSRLSRSGSSTNATPEKASRGISRFFS-S 1050

Query:   547 KNG 549
             K+G
Sbjct:  1051 KSG 1053

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2135154 AT4G36120 "AT4G36120" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 5.5e-19, Sum P(3) = 5.5e-19
 Identities = 28/55 (50%), Positives = 44/55 (80%)

Query:    43 SALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAM 97
             S LK +L + S+E+EIR  E+++S ++A+ A+KQHL+ +KK+AKLEAEC RL+ +
Sbjct:   242 SYLKYDLHVASKEVEIRNEEKNMSLKSADIANKQHLEGVKKIAKLEAECHRLRGL 296

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090684 AT3G19370 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
 Identities = 40/143 (27%), Positives = 76/143 (53%)

Query:   318 DSVEASELQ--LREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKIN----S 371
             +S E  EL+  L E+  ++  L+ E+  + E+K  VE+ + + +   + +  K+N    +
Sbjct:   479 ESDEKQELRKKLEESVEKIRNLEAEMKTLRENKEKVEAEMETEKSMKEDLDTKLNITRAN 538

Query:   372 LEEEVEMERALSMQITVK---CQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAG 428
             L E  +   +L ++   +   C++LE     ++ ++E  +  K     K    D+  A+ 
Sbjct:   539 LNETQKKLSSLEVEFDYRKSCCEELEGTCIELQLQLESVETKKPTQRNK-NGWDIATASV 597

Query:   429 KLAECQKTIQSLGKQLKSLATLE 451
             KL+ECQ+TI SL KQL++L+T E
Sbjct:   598 KLSECQETITSLRKQLRALSTTE 620

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

UNIPROTKB|P49454 CENPF "Centromere protein F" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
 Identities = 57/223 (25%), Positives = 101/223 (45%)

Query:    42 NSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRA 101
             N  L++  +I+  +   R +E  L N+  E  SK HL  ++ + K+EA C  L+ +    
Sbjct:  1877 NENLRLLHVIEDRD---RKVE-SLLNEMKELDSKLHLQEVQLMTKIEA-CIELEKIVGEL 1931

Query:   102 SSTNDHKSAAASS-NCAESLVDSQSDSWERLNA-VEMDIRKMGGTEPNMSEPSCSDSWAS 159
                N   S      +C    +  + ++ E LN+ +EM   K    +   +    +DSW  
Sbjct:  1932 KKENSDLSEKLEYFSCDHQELLQRVETSEGLNSDLEMHADKSSREDIGDNVAKVNDSWKE 1991

Query:   160 ALIA---ELDQFKNEKAVNRNLSASSPEIDLMDDFLEMEQLAAMPNNKSGKHV-----ES 211
               +    EL + ++EKA   +  A   E DL  + ++ E+L    +N++ + V     E 
Sbjct:  1992 RFLDVENELSRIRSEKASIEH-EALYLEADL--EVVQTEKLCLEKDNENKQKVIVCLEEE 2048

Query:   212 GNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLE 254
              +V T      + LR EL+ M  +T  L+Q  E+M  +  +LE
Sbjct:  2049 LSVVTSE---RNQLRGELDTMSKKTTALDQLSEKMKEKTQELE 2088

GO:0006260 "DNA replication" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0045120 "pronucleus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0000922 "spindle pole" evidence=IDA

GO:0000085 "G2 phase of mitotic cell cycle" evidence=IMP

GO:0000087 "M phase of mitotic cell cycle" evidence=IMP;IDA;TAS

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000940 "condensed chromosome outer kinetochore" evidence=IDA;TAS

GO:0000278 "mitotic cell cycle" evidence=IMP;TAS

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0007059 "chromosome segregation" evidence=IMP;NAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0051382 "kinetochore assembly" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0007094 "mitotic spindle assembly checkpoint" evidence=NAS

GO:0051310 "metaphase plate congression" evidence=IDA

GO:0045502 "dynein binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008283 "cell proliferation" evidence=NAS

GO:0042493 "response to drug" evidence=NAS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0000785 "chromatin" evidence=NAS

GO:0003682 "chromatin binding" evidence=NAS

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0016363 "nuclear matrix" evidence=IDA

GO:0015031 "protein transport" evidence=IMP;IDA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0016202 "regulation of striated muscle tissue development" evidence=ISS

GO:0005819 "spindle" evidence=IDA

GO:0030496 "midbody" evidence=IDA

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

ASPGD|ASPL0000042966 AN2480 [Emericella nidulans (taxid:162425)]

 Score = 106 (42.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
 Identities = 51/212 (24%), Positives = 99/212 (46%)

Query:    44 ALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASS 103
             +LK +L+  +EEL+    ERD      ETA K      +K A+ E +  RLK  A     
Sbjct:   192 SLKGDLV--AEELKRVTTERDEFKNKLETAVKS-----EKAAREELD--RLKQTASGEEQ 242

Query:   104 TNDHKSAAASSNCAESLVDSQSDSWERLNAVEMDIRKMGGT-EPNMSEPSCSDSWASALI 162
             +ND K A +    +   +  ++   E   + + +I ++    +    E     +    L 
Sbjct:   243 SNDSKDATSKPEQSHKEIKQEA---EEFFSFDNEIPRLESELKEKQEEVESLKAQTETLK 299

Query:   163 AELDQFKNE-KAVNRNLSASSPEIDLMDDFLEMEQLAAMPNNKSGKHVESGNVTTQSTLA 221
              +L   +   + +  NL +++ E+  + DF + ++ A M N K  K  E   + ++   +
Sbjct:   300 RDLSVARESTEGMVHNLESATRELAELRDFKDKQE-AEMKNLKISKQSEIDEIKSKLEAS 358

Query:   222 ESSLRAELEAMIHR-TAELEQK---LERMDAE 249
             E+++ AE  A + + +AEL+QK   +E++ A+
Sbjct:   359 ETAV-AETNAEVEKLSAELKQKAAEIEQLQAQ 389

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0000042 "protein targeting to Golgi" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 151 (58.2 bits), Expect = 5.0e-07, P = 5.0e-07
 Identities = 95/457 (20%), Positives = 195/457 (42%)

Query:     6 ESRLLELQSKAETAKSEPSYHMDPDXXXXXXXXXXXNSALKMELLIQSEELEIRAIERDL 65
             +S LLE  SK ++A  E     D             N    ++ L QS++ E++ ++  L
Sbjct:   488 DSELLET-SKKQSALLEQQSE-DSQSKDEKLKSVELNLQQTLQQL-QSKDQELQNVKSQL 544

Query:    66 SNQAAETASK-QHLDSIK-KVAKLEAECRRLKAMACRASSTNDHKSAAASS---NCAESL 120
               Q+ ++ SK Q L S++  + +   + + +K+   + S  N+ K     S   N  + L
Sbjct:   545 EQQSEDSESKDQKLKSVELTLQQTLQQLQDVKSQLEQQSEHNESKDEKLKSIELNLQQQL 604

Query:   121 V--DSQ-SDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWASALIAEL---D---QFKNE 171
                DS+ S   E+L  +E ++  +   E   S+ S +DS  S++  +L   D   + K+E
Sbjct:   605 QSKDSELSSKDEQLKCLESELSSV--KEQLSSQSSNTDSELSSVKDQLLSKDSELKSKDE 662

Query:   172 KAVNRNLSASSPEIDLMD--DFLEM--EQLAAMPNNKSGKHVESGNVTTQSTLAESSLRA 227
             +  N++    S E DL    D L    ++L +  +  S K  +  N  TQ    ES L++
Sbjct:   663 QLSNKDSQIKSIESDLQSVKDQLSSKDQELQSTKDQLSSKDEQLSNKDTQIKSIESDLQS 722

Query:   228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDXXXXXXXXXXXQXXXXXXXXXXXXXX 287
               + +  +  EL+   +++ ++  +L+   D++            Q              
Sbjct:   723 VKDQLSSKDQELQSTKDQLSSKDQELQSTKDQLSTKDQELQSAKDQLSCQSSTTDQLSAK 782

Query:   288 XXXXXXXXXXXXXXXXXXXXXXXXXXXXSQDSVEASELQLREATMQLEELQRELNLVNES 347
                                           + +++S+ QL     +L+ ++ +L+  +  
Sbjct:   783 DTELQSTKDQLSSKDSELQSIKDQLSTKDSE-LQSSKDQLSSKDSELQSIKDQLSSKDSD 841

Query:   348 KRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEE-EQWRMKQEVEL 406
              + V+  +SS + + Q+   +++S ++E++   ++  ++T K Q+L++    + +Q+ ++
Sbjct:   842 LQSVKDQLSSKDSDLQSTKDQLSSKDQELQ---SVKDELTSKDQELQQITSKQSEQDSKV 898

Query:   407 QQIAKSNAEVKIKQEDLEVAAGKLAECQ--KT-IQSL 440
              QI + + E K   E L V   K  E    KT IQ L
Sbjct:   899 SQI-QQDLENK-NAEFLSVTFEKQTEIDQLKTQIQDL 933

GO:0005615 "extracellular space" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2045412 AT2G32240 "AT2G32240" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
 Identities = 45/204 (22%), Positives = 92/204 (45%)

Query:   323 SELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEM---E 379
             SE +L++A  +      E + + E  R +E  + S E +    + K +SL+E++E     
Sbjct:   804 SEHRLQKAMEEFTSRDSEASSLTEKLRDLEGKIKSYEEQLAEASGKSSSLKEKLEQTLGR 863

Query:   380 RALSMQITVKC-QKLEEEQWR-MKQEVELQQIAKSNAEVKIKQEDLE--VAAGK------ 429
              A +  +  K  Q+ ++ Q + ++   E + +A++N ++KIK ++LE  + +G       
Sbjct:   864 LAAAESVNEKLKQEFDQAQEKSLQSSSESELLAETNNQLKIKIQELEGLIGSGSVEKETA 923

Query:   430 LAECQKTIQSLG-KQLKSLATLEDFLIDTASIPEFSRAALPIPKTVGESWKLPSNVTFSH 488
             L   ++ I+    K+ +S   +E        I E+ + A      V ++ K+      S 
Sbjct:   924 LKRLEEAIERFNQKETESSDLVEKLKTHENQIEEYKKLAHEA-SGVADTRKVELEDALSK 982

Query:   489 KRDLNSPGVVAGTTCPSISKNDGN 512
              ++L S     G  C  + K  G+
Sbjct:   983 LKNLESTIEELGAKCQGLEKESGD 1006

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

UNIPROTKB|O42263 cenpe "Kinesin-related protein" [Xenopus laevis (taxid:8355)]

 Score = 111 (44.1 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
 Identities = 35/135 (25%), Positives = 68/135 (50%)

Query:   328 REATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQIT 387
             ++++ Q+EEL+  L   +      E  +S    E + +TAKI+SLEEE+    ++  +  
Sbjct:  2025 QQSSSQMEELRESLKTKDLQLEEAEKEISEATNEIKNLTAKISSLEEEILQNASILNEAV 2084

Query:   388 VKCQKLEEEQWRMKQEVE-LQQIAKS--NAEVKIKQEDLEVAAGKLAECQKTIQSLGKQL 444
              + + L   + ++  E+E L    KS  +A  + K+E  E A  K+A   + I+ L K++
Sbjct:  2085 SERENLRHSKQQLVSELEQLSLTLKSRDHAFAQSKREKDE-AVNKIASLAEEIKILTKEM 2143

Query:   445 KSLATLEDFLIDTAS 459
                   ++ L + +S
Sbjct:  2144 DEFRDSKESLQEQSS 2158

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	554
pfam05911	767	pfam05911, DUF869, Plant protein of unknown functi	1e-24
pfam05911	767	pfam05911, DUF869, Plant protein of unknown functi	4e-17
pfam05911	767	pfam05911, DUF869, Plant protein of unknown functi	1e-15
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-13
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-12
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-12
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	8e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-06
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	1e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	3e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-06
COG5185	622	COG5185, HEC1, Protein involved in chromosome segr	4e-06
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	5e-06
COG4026	290	COG4026, COG4026, Uncharacterized protein containi	6e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	8e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	1e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	1e-05
TIGR03345	852	TIGR03345, VI_ClpV1, type VI secretion ATPase, Clp	1e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-05
pfam03961	450	pfam03961, DUF342, Protein of unknown function (DU	2e-05
pfam08317	321	pfam08317, Spc7, Spc7 kinetochore protein	2e-05
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	2e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-05
TIGR03346	852	TIGR03346, chaperone_ClpB, ATP-dependent chaperone	3e-05
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	3e-05
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	3e-05
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	4e-05
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	4e-05
PRK05729	874	PRK05729, valS, valyl-tRNA synthetase; Reviewed	4e-05
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	6e-05
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	6e-05
pfam13851	201	pfam13851, GAS, Growth-arrest specific micro-tubul	7e-05
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	7e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	9e-05
PRK09039	343	PRK09039, PRK09039, hypothetical protein; Validate	9e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	1e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	1e-04
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	1e-04
pfam04111	356	pfam04111, APG6, Autophagy protein Apg6	1e-04
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	1e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	1e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	2e-04
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	3e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	3e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	4e-04
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	4e-04
pfam03961	450	pfam03961, DUF342, Protein of unknown function (DU	4e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	4e-04
PRK11448	1123	PRK11448, hsdR, type I restriction enzyme EcoKI su	4e-04
PRK11448	1123	PRK11448, hsdR, type I restriction enzyme EcoKI su	4e-04
pfam10147	217	pfam10147, CR6_interact, Growth arrest and DNA-dam	4e-04
pfam04156	186	pfam04156, IncA, IncA protein	4e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	5e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	5e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	6e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	6e-04
PRK11448	1123	PRK11448, hsdR, type I restriction enzyme EcoKI su	6e-04
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	6e-04
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	7e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	9e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.001
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.001
pfam08317	321	pfam08317, Spc7, Spc7 kinetochore protein	0.001
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	0.001
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.001
PRK05431	425	PRK05431, PRK05431, seryl-tRNA synthetase; Provisi	0.001
pfam08614	194	pfam08614, ATG16, Autophagy protein 16 (ATG16)	0.001
PRK00290	627	PRK00290, dnaK, molecular chaperone DnaK; Provisio	0.001
pfam03962	188	pfam03962, Mnd1, Mnd1 family	0.001
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002
COG4026	290	COG4026, COG4026, Uncharacterized protein containi	0.002
pfam04111	356	pfam04111, APG6, Autophagy protein Apg6	0.002
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	0.002
pfam05266	190	pfam05266, DUF724, Protein of unknown function (DU	0.002
TIGR01554	384	TIGR01554, major_cap_HK97, phage major capsid prot	0.002
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	0.003
cd07651	236	cd07651, F-BAR_PombeCdc15_like, The F-BAR (FES-CIP	0.003
PTZ00491	850	PTZ00491, PTZ00491, major vault protein; Provision	0.003
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.004
pfam04156	186	pfam04156, IncA, IncA protein	0.004
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.004

>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869)

 Score =  108 bits (270), Expect = 1e-24
 Identities = 86/302 (28%), Positives = 159/302 (52%), Gaps = 21/302 (6%)

Query: 174 VNRNLSASSPEIDLMDDFLEMEQLAAMPNNKSGKHVESGNVTTQSTLAESSLRAELEAMI 233
           + R+ +      ++      +E+ +A+             ++  +++ E  +    + ++
Sbjct: 469 LERSSNGDDENEEVAMVGSLVEESSAVIERSQELEGAVSRISEFTSVLEHEVTV-CQDLL 527

Query: 234 HRTAELEQKLERMDA---EKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDA 290
              A+LE+ ++         V+ E+ L  +  E +E+++    + + + E+    E   A
Sbjct: 528 DGKADLEKFIQEFSLTLEWVVNQEKSLQDVSVEASEIKKNFLGLKSSEKEINSPDEVKGA 587

Query: 291 EKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRI 350
                 E++E +++EK  L+  L+K +D +E S+ +L+E   +LEEL+ EL+   ES  +
Sbjct: 588 VCISTLEELETLKSEKENLDGELSKCKDDLEESKNKLQETEKKLEELKSELDASQESNSL 647

Query: 351 VESNVSSM--------------EMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEE 396
            E+ +  M              E E +++  KI+SLE+E+E ER    ++  KC++LEE+
Sbjct: 648 AETQLKCMVESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEK 707

Query: 397 QWRMKQEVELQQIAKSNAEVKIKQE-DLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLI 455
             R +QE  +Q++     E KIKQE ++  AA KLAECQ+TI SLGKQL+SLA  E+FL+
Sbjct: 708 IERAEQEENMQKL--DEEEQKIKQEKEIAAAAEKLAECQETILSLGKQLQSLAPPEEFLL 765

Query: 456 DT 457
           D+
Sbjct: 766 DS 767

This family consists of a number of sequences found in Arabidopsis thaliana, Oryza sativa and Lycopersicon esculentum (Tomato). The function of this family is unknown. Length = 767

>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869)

 Score = 84.6 bits (209), Expect = 4e-17
 Identities = 50/121 (41%), Positives = 69/121 (57%), Gaps = 23/121 (19%)

Query: 1   MKLEFESRLLELQSKAETAKSEPSYHMD-----------------------PDLFEKLEF 37
           +K E E +LLELQ +   A +E                              DL  +LE 
Sbjct: 86  VKAELEKKLLELQKELARAAAENDALSRSLQEKSKMIMELSEEKSRAESEIEDLKARLES 145

Query: 38  LEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAM 97
            EKENS+LK E+ + S+ELEIR  ER++S Q+A+ ASKQHL+ +KK+AKLEAEC+RL+ +
Sbjct: 146 AEKENSSLKYEVHVLSKELEIRNEERNMSLQSADAASKQHLEGVKKIAKLEAECQRLRGL 205

Query: 98  A 98
            
Sbjct: 206 V 206

This family consists of a number of sequences found in Arabidopsis thaliana, Oryza sativa and Lycopersicon esculentum (Tomato). The function of this family is unknown. Length = 767

>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869)

 Score = 80.0 bits (197), Expect = 1e-15
 Identities = 84/341 (24%), Positives = 141/341 (41%), Gaps = 34/341 (9%)

Query: 147 NMSEPSCSDSWASALIAELDQFKNEKAVNRNLS--ASSPEIDLMDDFLEMEQLAAMPN-- 202
           N  E SCS+SWASALI+EL+QFK EK + ++    ASS E++LMDDFLEME+LA +P   
Sbjct: 339 NDDEGSCSESWASALISELEQFKKEKGMGKSSKGTASSSEMELMDDFLEMEKLAMLPPES 398

Query: 203 NKSGKHVESGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERM------DAEKVDLEEK 256
           +  G  V S   +  S      +  E       +  L + L+ +           ++ E 
Sbjct: 399 SADGSKVSSPKCSDSSVALTGPVEHEDNLESKLSDRLPEVLQSVLKLVMEKHIISEISEI 458

Query: 257 LDKMDAEKAELE-----EKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEM 311
           L+ ++AE   LE     +   +  A    L E+   +     +LE  + ++    + LE 
Sbjct: 459 LEDIEAELDSLERSSNGDDENEEVAMVGSLVEESSAVIERSQELEGAVSRISEFTSVLEH 518

Query: 312 ALAKSQD----------SVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEME 361
            +   QD           ++   L L     Q + LQ      +E K+      SS    
Sbjct: 519 EVTVCQDLLDGKADLEKFIQEFSLTLEWVVNQEKSLQDVSVEASEIKKNFLGLKSS---- 574

Query: 362 AQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQE 421
                 K  +  +EV+    +S    ++  K E+E    +       + +S  +++  ++
Sbjct: 575 -----EKEINSPDEVKGAVCISTLEELETLKSEKENLDGELSKCKDDLEESKNKLQETEK 629

Query: 422 DLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPE 462
            LE    +L   Q++      QLK +    + L   A   E
Sbjct: 630 KLEELKSELDASQESNSLAETQLKCMVESYESLELRAKDLE 670

This family consists of a number of sequences found in Arabidopsis thaliana, Oryza sativa and Lycopersicon esculentum (Tomato). The function of this family is unknown. Length = 767

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 72.8 bits (179), Expect = 2e-13
 Identities = 54/216 (25%), Positives = 113/216 (52%), Gaps = 7/216 (3%)

Query: 219 TLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEK 278
                 L+ EL A+     +L+ +LE ++ E  +LEE+L+++     ELEE+LE ++   
Sbjct: 715 ERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774

Query: 279 AELEEKLEKM-------DAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREAT 331
           A+L+E++E++         E  +LEE++E+ E     LE  L   +   E  E ++ E  
Sbjct: 775 AKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834

Query: 332 MQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQ 391
            ++EEL+ +L+ + E    +E  +  ++ E + + A+   LE+E++       ++  + +
Sbjct: 835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELR 894

Query: 392 KLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAA 427
           +LE E   +K+E+E  +      E K+++ ++E+  
Sbjct: 895 ELESELAELKEEIEKLRERLEELEAKLERLEVELPE 930

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 70.1 bits (172), Expect = 1e-12
 Identities = 58/197 (29%), Positives = 108/197 (54%), Gaps = 2/197 (1%)

Query: 225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEK 284
           L+  LE +      LE+ L ++  E  +LEEK   +  E  ELEE+LE+ +     LE +
Sbjct: 756 LQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERE 815

Query: 285 LEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLV 344
           LE ++  + +LE++IE++E E  ELE  L + ++ +E  E +L E   +LEEL+ E   +
Sbjct: 816 LESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEEL 875

Query: 345 NESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEV 404
            +  + +E     +E E + + +++  L+EE+E  R    ++  K ++LE E    + E 
Sbjct: 876 EDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVE--LPELEE 933

Query: 405 ELQQIAKSNAEVKIKQE 421
           EL++  +   E ++++E
Sbjct: 934 ELEEEYEDTLETELERE 950

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 70.9 bits (174), Expect = 1e-12
 Identities = 63/249 (25%), Positives = 128/249 (51%), Gaps = 7/249 (2%)

Query: 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLE 286
            EL  ++ R  EL ++LE +  E  + EE+L+++ AE  ELEEKLE++  E +ELEE++E
Sbjct: 225 LELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIE 284

Query: 287 KMD-------AEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQR 339
           ++         E ++LE++ + +    A LE  L + +  +E  E +L E   +L EL+ 
Sbjct: 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE 344

Query: 340 ELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWR 399
           +L  + E    +E+ +  +E E + + +++  LEE++E  R+   Q+ ++   L  E  R
Sbjct: 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404

Query: 400 MKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTAS 459
           ++  +E  +  +   + +I++   ++   +L E Q  ++ L ++L+ L    + L +   
Sbjct: 405 LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464

Query: 460 IPEFSRAAL 468
                    
Sbjct: 465 ELREELEEA 473

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 69.7 bits (171), Expect = 2e-12
 Identities = 52/225 (23%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEK 284
           L  ++E +  + AELE+ L  +  E  +LEE+L+++  E  EL  ++  +  + A LE +
Sbjct: 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741

Query: 285 LEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLV 344
           +E+++   A+L +++ ++EAE  ELE  L ++++ +  +E ++ E   Q+E+L+ EL  +
Sbjct: 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801

Query: 345 NESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEV 404
            E+   + + ++ +  EA  +  ++ SLE  +         +  + ++L E+   +  E+
Sbjct: 802 REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861

Query: 405 ELQQ--IAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL 447
           E  +  I +  +E++    +       LA  +  ++ L ++L+ L
Sbjct: 862 EELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 69.3 bits (170), Expect = 3e-12
 Identities = 52/222 (23%), Positives = 116/222 (52%), Gaps = 11/222 (4%)

Query: 225 LRAELEAMIHRTAELEQKLERMDAEKVDLE-----EKLDKMDAEKAELEEKLEQMDAEKA 279
           +++EL+ +  R  ELE+ L +++    DLE      ++ ++ AE ++LEE++ +++A   
Sbjct: 756 VKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLR 815

Query: 280 ELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQR 339
           E+E+KL ++  EK  LE++I++++ ++ +L+  +   +  +E    +  E   +LEEL+ 
Sbjct: 816 EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEA 875

Query: 340 ELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWR 399
            L  +      ++     +E + + +  KI  LE ++E +R    ++  K + LEEE   
Sbjct: 876 ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE--- 932

Query: 400 MKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLG 441
                E++     + E+  ++  LE    +L   ++ I++L 
Sbjct: 933 ---LSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALE 971

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 68.2 bits (167), Expect = 7e-12
 Identities = 57/228 (25%), Positives = 116/228 (50%)

Query: 225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEK 284
           LR E+  +     EL+++L  +  E   LE++   +    A LE +LE+++A+  ELE K
Sbjct: 272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK 331

Query: 285 LEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLV 344
           L+++  E A+LEEK+E+++ E   LE  L + +  +E  E +L E   QLE L+ ++  +
Sbjct: 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391

Query: 345 NESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEV 404
                 + + +  +E   + +  +   L++E+E       +  +K  + E E+   + E 
Sbjct: 392 ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE 451

Query: 405 ELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLED 452
             +++ +    ++  +E+LE A   L   ++ +  L  +L SL  L++
Sbjct: 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE 499

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 67.8 bits (166), Expect = 8e-12
 Identities = 57/239 (23%), Positives = 130/239 (54%), Gaps = 5/239 (2%)

Query: 216 TQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMD 275
           +++  +  + + EL+ +    AELE +LE+++ E   L+ +L  ++    EL  +LE+++
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715

Query: 276 AEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLE 335
            +  EL+ +L  ++ E  +L+ ++E++E E  ELE  L + Q+ +E  E +L      L 
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775

Query: 336 ELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEE 395
           +L+ E+  + E ++ ++  +  +E E +    ++++LE E+E       ++  + ++LEE
Sbjct: 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835

Query: 396 EQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFL 454
           E     +E+E +++ +   E++  +++LE    +L E +   + L  +LK L   ++ L
Sbjct: 836 E----IEELE-EKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEEL 889

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 67.8 bits (166), Expect = 1e-11
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 12/218 (5%)

Query: 224 SLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEE 283
            L AE+ ++    AE E++LE  +     LE ++DK+ AE  ELE ++E+    + +L E
Sbjct: 298 ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE 357

Query: 284 KLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNL 343
           +  ++  E   L  ++E+++ E AE    L   ++ +E       +   ++ EL+REL+ 
Sbjct: 358 EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE-------KLKREINELKRELDR 410

Query: 344 VNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQE 403
           + E  + +   ++ +      + AKIN LEEE E        + +K Q+ + EQ      
Sbjct: 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKE-----DKALEIKKQEWKLEQLAADLS 465

Query: 404 VELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLG 441
              Q++     E    +++L     +LAE +   ++  
Sbjct: 466 KYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 67.4 bits (165), Expect = 1e-11
 Identities = 55/226 (24%), Positives = 121/226 (53%), Gaps = 14/226 (6%)

Query: 222 ESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAEL 281
            SSL++EL  + +R  EL Q+L     +  ++E+++++++ E+ +L+E+LE+++ + + L
Sbjct: 690 LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSL 749

Query: 282 EEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQREL 341
           E+++E + +E  +LE +IE++E +  +LE AL          +L+ R +  ++ E+Q EL
Sbjct: 750 EQEIENVKSELKELEARIEELEEDLHKLEEALN---------DLEARLSHSRIPEIQAEL 800

Query: 342 NLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMK 401
           + + E    +E+ +  +E +   +T +   LE+  E++     +I +K Q    E+   +
Sbjct: 801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK--EIQELQEQRIDLKEQIKSIEK---E 855

Query: 402 QEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL 447
            E    +  +   E++  +  L     +L + +K    L  QL+ L
Sbjct: 856 IENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL 901

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 65.5 bits (160), Expect = 5e-11
 Identities = 45/208 (21%), Positives = 111/208 (53%), Gaps = 5/208 (2%)

Query: 223 SSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELE 282
           S+LR +L  +     +LE+++ ++  E  +LE ++++++    E EE+L + +AE  ELE
Sbjct: 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788

Query: 283 EKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELN 342
            ++E++  E   L E ++++ AE   L    A  ++ +E+ E ++     +LE+L+ ++ 
Sbjct: 789 AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848

Query: 343 LVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQ 402
            ++E    + + +  +E   + + +++ +L  E          +  + ++L EE   ++ 
Sbjct: 849 ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908

Query: 403 EV-----ELQQIAKSNAEVKIKQEDLEV 425
           +      EL+++ +  A+++++ E LEV
Sbjct: 909 KRSELRRELEELREKLAQLELRLEGLEV 936

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.7 bits (158), Expect = 8e-11
 Identities = 66/230 (28%), Positives = 131/230 (56%), Gaps = 6/230 (2%)

Query: 224 SLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEE 283
            LR ELE +    + LE++LE +  E  + E++++++ +E  EL E+LE++  E  EL+E
Sbjct: 236 ELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKE 295

Query: 284 KLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNL 343
           ++E+++ E + L E++E++E E  ELE  L + ++ +EA + +L E    LEEL++ L  
Sbjct: 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAE 355

Query: 344 VNESKRIVESNVSSMEMEAQTMTAKINS----LEEEVEMERALSMQITVKCQKLEEEQWR 399
           + E+K  +E  +S++  E + +   +      LE E+   R    ++  + + LEE   R
Sbjct: 356 LEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLER 415

Query: 400 MKQEVE--LQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL 447
           + + +E   +++ +  AE++  Q +LE    +L E ++ ++ L  +LK L
Sbjct: 416 LSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKEL 465

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 64.3 bits (157), Expect = 1e-10
 Identities = 75/350 (21%), Positives = 152/350 (43%), Gaps = 50/350 (14%)

Query: 30  DLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEA 89
           +L EK+E LE++ + L+  L    +ELE    E +   +  E  S+Q     K +A+LEA
Sbjct: 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740

Query: 90  ECRRLKAMACRASSTNDHKSAAASSNCAESLVDSQSDSWERLNAVEMDIRKMGGTEPNMS 149
           E  +L+    + S               E L +   ++ E L   E +I +         
Sbjct: 741 EVEQLEERIAQLSKEL-----TELEAEIEELEERLEEAEEELAEAEAEIEE--------- 786

Query: 150 EPSCSDSWASALIAELDQFKNE-KAVNRNLSASSPEIDLMDDFLEMEQLAAMPNNKSGKH 208
                      L A+++Q K E KA+   L     E+ L+++                  
Sbjct: 787 -----------LEAQIEQLKEELKALREALDELRAELTLLNEEA---------------- 819

Query: 209 VESGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELE 268
                          SL   + A   R  +LE+++E +  +   L  ++++++    ELE
Sbjct: 820 -------ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872

Query: 269 EKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLR 328
            +LE +  E+A LEE L  + +E  +L E++ ++E++++EL   L + ++ +   EL+L 
Sbjct: 873 SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE 932

Query: 329 EATMQLEELQRELN-LVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVE 377
              ++++ LQ  L+   + +    E+  + +E + +    ++  LE +++
Sbjct: 933 GLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 67/261 (25%), Positives = 135/261 (51%), Gaps = 13/261 (4%)

Query: 221 AESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAE 280
             S L  ELE +     E E+++E + +E  +L E+L+++  E  EL+E++E+++ E + 
Sbjct: 247 ELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISL 306

Query: 281 LEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRE 340
           L E+LE+++ E  +LEE++E+++ +   L+  L + +  +E  E  L E     EEL+ +
Sbjct: 307 LRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEK 366

Query: 341 LNLVNESK-----------RIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVK 389
           L+ + E               +E+ ++ +  E + +  +I SLEE +E        +  +
Sbjct: 367 LSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEE 426

Query: 390 CQKLEEEQWRMKQEVE--LQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL 447
            ++LE E   ++ E+E   +++ +   +++  ++ L+    +LAE Q+ +Q L K+L SL
Sbjct: 427 LKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSL 486

Query: 448 ATLEDFLIDTASIPEFSRAAL 468
               D L       +  RA L
Sbjct: 487 EARLDRLEAEQRASQGVRAVL 507

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 62.8 bits (153), Expect = 3e-10
 Identities = 54/235 (22%), Positives = 107/235 (45%), Gaps = 17/235 (7%)

Query: 223 SSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEK--------AELEEKLEQM 274
           +SL  ELE +    +ELE++LE ++    +L +K+  +  E+         ELE ++  +
Sbjct: 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASL 306

Query: 275 DAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQL 334
           +   AE E +LE  +   AKLE +I+K+ AE  ELE  + + +   +    +  E   +L
Sbjct: 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL 366

Query: 335 EELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLE 394
           E+L+ EL  V++        +     + + +  +IN L+ E++  +          Q+L 
Sbjct: 367 EDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL-------QRLS 419

Query: 395 EEQWRMKQEVE--LQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL 447
           EE   +   +     +I +   E + K  +++    KL +    +    ++L  L
Sbjct: 420 EELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.0 bits (151), Expect = 5e-10
 Identities = 61/230 (26%), Positives = 125/230 (54%), Gaps = 10/230 (4%)

Query: 224  SLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEE 283
             L  + +A+     ELE++LE  +     LE +L+ ++  +  LE+++E+++ E  ELEE
Sbjct: 783  ELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEE 842

Query: 284  KLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNL 343
            KL++++ E  +LE+++E+++ E  ELE    + +D ++  E +  E   +L EL+ EL  
Sbjct: 843  KLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAE 902

Query: 344  VNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITV--KCQKLEEEQWRMK 401
            + E    +   +  +E + + +  ++  LEEE+E E   +++  +  + ++LEEE   + 
Sbjct: 903  LKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALG 962

Query: 402  Q-----EVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKS 446
                    E +++ +   E+K ++EDLE A  KL    + I+ L K+ + 
Sbjct: 963  PVNLRAIEEYEEVEERYEELKSQREDLEEAKEKL---LEVIEELDKEKRE 1009

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.0 bits (151), Expect = 6e-10
 Identities = 59/220 (26%), Positives = 120/220 (54%), Gaps = 11/220 (5%)

Query: 235 RTAELEQKLERMDAEKVDLEE----KLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDA 290
              ELE++LE+++ +    E     K +  + E A L  KL+++  E  ELEE+L +++ 
Sbjct: 194 LLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEE 253

Query: 291 EKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRI 350
           E  +L+E++E+ E E  EL+  L + ++ +E  + +L E   ++EEL+ E++L+ E    
Sbjct: 254 ELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEE 313

Query: 351 VESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIA 410
           +E+ +  +E   + +  KI +L+EE+E    L  ++    ++L  E    K+E+E +  A
Sbjct: 314 LENELEELEERLEELKEKIEALKEELEERETLLEEL----EQLLAELEEAKEELEEKLSA 369

Query: 411 KSNAEVKIKQ---EDLEVAAGKLAECQKTIQSLGKQLKSL 447
                 ++ +   E+L     +LAE +  ++ L ++++SL
Sbjct: 370 LLEELEELFEALREELAELEAELAEIRNELEELKREIESL 409

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.3 bits (144), Expect = 4e-09
 Identities = 53/229 (23%), Positives = 116/229 (50%), Gaps = 4/229 (1%)

Query: 223 SSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELE 282
            SL   L  +     ELE+K + +  E  +LEE+L++ +     LE +LE ++  +  LE
Sbjct: 768 ESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLE 827

Query: 283 EKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELN 342
           +++E+++ E  +LEEK++++E E  ELE  L + ++ +E  E +  E   +L+EL+ E  
Sbjct: 828 QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKE 887

Query: 343 LVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQ 402
            + E  R +ES ++ ++ E + +  ++  LE ++E       ++  + ++  E+    + 
Sbjct: 888 ELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETEL 947

Query: 403 EVELQQIAKSNAEVKIKQ----EDLEVAAGKLAECQKTIQSLGKQLKSL 447
           E E++++ +    +        E+ E    +  E +   + L +  + L
Sbjct: 948 EREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKL 996

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.9 bits (143), Expect = 5e-09
 Identities = 51/219 (23%), Positives = 108/219 (49%), Gaps = 22/219 (10%)

Query: 223 SSLRAELEAMIHRTAE----LEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEK 278
           ++  + LE       E    LE++LE ++A+  +LE KLD++  E AELEEKLE++  E 
Sbjct: 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353

Query: 279 AELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQ 338
             LE +LE+++AE  +LE ++E++E +   L   +A+ +  + +   ++     +LE L+
Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413

Query: 339 RELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQW 398
                + +    +   +   E++       +  LEEE+E              +L+EE  
Sbjct: 414 DRRERLQQEIEELLKKLEEAELKELQAE--LEELEEELE--------------ELQEELE 457

Query: 399 RMKQEVEL--QQIAKSNAEVKIKQEDLEVAAGKLAECQK 435
           R+++ +E   +++ ++   +   + +L     +L   ++
Sbjct: 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 48/197 (24%), Positives = 97/197 (49%), Gaps = 4/197 (2%)

Query: 221 AESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQM----DA 276
               L   LE +  +   L+++LE  +    +LE+ L +++  K ELEEKL  +    + 
Sbjct: 317 ELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376

Query: 277 EKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEE 336
               L E+L +++AE A++  ++E+++ E   LE  L +  + +E  + +L+E   +LEE
Sbjct: 377 LFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEE 436

Query: 337 LQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEE 396
           LQ EL  +NE    +E  +  +    + +  ++  L+EE++        +  +  +LE E
Sbjct: 437 LQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAE 496

Query: 397 QWRMKQEVELQQIAKSN 413
           Q   +    + +  +S 
Sbjct: 497 QRASQGVRAVLEALESG 513

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 55.1 bits (133), Expect = 9e-08
 Identities = 38/163 (23%), Positives = 74/163 (45%)

Query: 224 SLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEE 283
            L  E   +     +L  +LE +D E  +  ++L     +  +L+ ++ ++  E   L+E
Sbjct: 354 KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQE 413

Query: 284 KLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNL 343
           +L+++  E A L   I  +EA+  ELE         ++  E +L +    L + ++EL  
Sbjct: 414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473

Query: 344 VNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQI 386
           + E    VE  +S ++ E     A+  + EE V   RA+   +
Sbjct: 474 LKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVL 516

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 54.7 bits (132), Expect = 9e-08
 Identities = 49/258 (18%), Positives = 114/258 (44%), Gaps = 38/258 (14%)

Query: 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEE----KLEQMDAEKAELE 282
            + E  +    E+E+ +ER+D    +  ++L+++  E+ + E       E+ + E  EL 
Sbjct: 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELL 229

Query: 283 EKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEEL----- 337
           ++ E ++ +K  +E ++  +E E  +L   +++ +  +E  E  L E   ++++L     
Sbjct: 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ 289

Query: 338 ---QRELNLVNESKRIVESNVSSMEMEAQTMT--------------AKINSLEEEVEMER 380
              + ++  +      +E +++  E E +                 A+I  LE E+E ER
Sbjct: 290 LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER 349

Query: 381 ALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSL 440
               ++T +  +L+EE        EL+++ K  AE + + +D           ++ ++ L
Sbjct: 350 KRRDKLTEEYAELKEE--LEDLRAELEEVDKEFAETRDELKDY----------REKLEKL 397

Query: 441 GKQLKSLATLEDFLIDTA 458
            +++  L    D L +  
Sbjct: 398 KREINELKRELDRLQEEL 415

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 40/136 (29%), Positives = 79/136 (58%)

Query: 224 SLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEE 283
           +LR EL  +    AE+  +LE +  E   LEE+L+++     +L+E+L++++AE  EL+ 
Sbjct: 380 ALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQT 439

Query: 284 KLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNL 343
           +LE+++ E  +LEE++E++     ELE  LA+ Q+ ++  E +L     +L+ L+ E   
Sbjct: 440 ELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA 499

Query: 344 VNESKRIVESNVSSME 359
               + ++E+  S + 
Sbjct: 500 SQGVRAVLEALESGLP 515

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 61/243 (25%), Positives = 128/243 (52%), Gaps = 12/243 (4%)

Query: 226 RAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEE---KLEQMDAEKAELE 282
             EL  ++ +  EL ++LE ++ E   LEE+L+++   + ELEE   ++E++ +E  EL 
Sbjct: 224 ELELALLLAKLKELRKELEELEEELSRLEEELEEL---QEELEEAEKEIEELKSELEELR 280

Query: 283 EKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELN 342
           E+LE++  E  +L+E+IE++E E + L   L + ++ +E  E +L E   ++E L+ EL 
Sbjct: 281 EELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELE 340

Query: 343 LVNESKRIVESNVSSMEM----EAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQW 398
                   +E  ++ +E       + ++A +  LEE  E  R    ++  +  ++  E  
Sbjct: 341 ERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELE 400

Query: 399 RMKQEVE--LQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLID 456
            +K+E+E   +++ + +  ++  +E+L+    +L E Q  ++ L ++L+ L    + L D
Sbjct: 401 ELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRD 460

Query: 457 TAS 459
              
Sbjct: 461 RLK 463

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 51.6 bits (124), Expect = 8e-07
 Identities = 51/197 (25%), Positives = 101/197 (51%), Gaps = 15/197 (7%)

Query: 226 RAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEE-- 283
              LE  I RT  +E+ ++  + E  ++  +++++ +E  EL E+LE+++ E  ELEE  
Sbjct: 178 IERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELK 237

Query: 284 --------KLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLE 335
                   +LE ++  K KLEEKI ++E    EL+  + + ++ V+  + +L+E   +  
Sbjct: 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYI 296

Query: 336 ELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEE 395
           +L        +  R +E  +S +E E   +  +I  LEE+ E       ++  K ++LE+
Sbjct: 297 KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE----ELKKKLKELEK 352

Query: 396 EQWRMKQEVELQQIAKS 412
               +++  EL + AK+
Sbjct: 353 RLEELEERHELYEEAKA 369

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 51.6 bits (124), Expect = 9e-07
 Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 1/168 (0%)

Query: 219 TLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEK 278
                 L  E+E +     ELE+KL+ ++ E  +LE++L+++  E  ELE + E+++ E 
Sbjct: 820 EQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDEL 879

Query: 279 AELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQ 338
            ELEE+ E+++ E  +LE ++ +++ E  +L   L + +  +E  E++L E   +LEE +
Sbjct: 880 KELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEE-E 938

Query: 339 RELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQI 386
            E  L  E +R +E     +E         I   EE  E    L  Q 
Sbjct: 939 YEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQR 986

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 47/218 (21%), Positives = 113/218 (51%), Gaps = 6/218 (2%)

Query: 237 AELEQKLERMD--AEKVD--LEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEK 292
            ELE++L+ ++  AEK +   E K +  + E A L  +LE++  E  EL+E+L++ + E 
Sbjct: 196 NELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEEL 255

Query: 293 AKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVE 352
            +L  +++++E +  EL + +++ ++ +E  + +L     ++  L+++  ++ E    +E
Sbjct: 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315

Query: 353 SNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKS 412
             +  +E + + + +K++ L EE+        ++  + + LE E   ++ E+E  +    
Sbjct: 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375

Query: 413 NAEVKIKQEDLEVAA--GKLAECQKTIQSLGKQLKSLA 448
             E +++    +VA    ++A     I+ L  +L+ L 
Sbjct: 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 51.0 bits (123), Expect = 1e-06
 Identities = 51/209 (24%), Positives = 94/209 (44%), Gaps = 29/209 (13%)

Query: 228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEK 287
           +L  +I    ELE++LE+   E    E  L + +  K ELEEK E++  E+ +L E+ EK
Sbjct: 517 KLNELIASLEELERELEQKAEE---AEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEK 573

Query: 288 MDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNES 347
                 + ++ I++ + E  E+   L + Q     + ++  E    L E ++ LN  NE 
Sbjct: 574 ------EAQQAIKEAKKEADEIIKELRQLQKG-GYASVKAHE----LIEARKRLNKANEK 622

Query: 348 KRIVESNVSSMEMEAQT-MTAKINSLEEEVE----------MERALSMQITVKCQKLEEE 396
           K   +      + E +     K  SL ++ E          + +A  M++ V    LE+ 
Sbjct: 623 KEKKKKKQKEKQEELKVGDEVKYLSLGQKGEVLSIPDDKEAIVQAGIMKMKVPLSDLEKI 682

Query: 397 QWRMKQEVELQQIAKSNAEVKIKQEDLEV 425
           Q   K + + ++  K+  + K +   LE+
Sbjct: 683 Q---KPKKKKKKKPKT-VKPKPRTVSLEL 707

Length = 782

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 52/209 (24%), Positives = 101/209 (48%), Gaps = 5/209 (2%)

Query: 221 AESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAE 280
               L   LE +      LE+  E+++  + +LEE  ++ +     LEE+L++++    E
Sbjct: 313 LLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEE 372

Query: 281 LEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRE 340
           LE++LEK      +LEE I++++ E AEL  AL + Q+ +E  E +L E   +LEEL+ E
Sbjct: 373 LEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEE 432

Query: 341 LNLVNESKRIVESNVSSMEMEAQTMTA-----KINSLEEEVEMERALSMQITVKCQKLEE 395
           +  + E    +ES    +   A          +    E E E+     +++    ++L  
Sbjct: 433 IKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSR 492

Query: 396 EQWRMKQEVELQQIAKSNAEVKIKQEDLE 424
           E+   +   E++++ K   E++ +  +L 
Sbjct: 493 EKEEAELREEIEELEKELRELEEELIELL 521

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 44/200 (22%), Positives = 96/200 (48%), Gaps = 13/200 (6%)

Query: 259 KMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQD 318
           K    K E E KLE+        EE LE+++    +LE+++EK+E +  + E       +
Sbjct: 169 KYKERKEEAERKLERT-------EENLERLEDLLEELEKQLEKLERQAEKAERYQELKAE 221

Query: 319 ----SVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEE 374
                +     +L+E   +LEEL+ EL+ + E    ++  +   E E + + +++  L E
Sbjct: 222 LRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELRE 281

Query: 375 EVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQ--EDLEVAAGKLAE 432
           E+E  +   +++  + ++LE E   +++ +E  +      E ++++  E +E    +L E
Sbjct: 282 ELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEE 341

Query: 433 CQKTIQSLGKQLKSLATLED 452
            +  ++ L + L  L   ++
Sbjct: 342 RETLLEELEQLLAELEEAKE 361

Length = 1163

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 221 AESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAE--- 277
            E   R E+     R  +LE+ +ER++ E  +L+ +L+++  E  +LE +LE+   E   
Sbjct: 409 TEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD 468

Query: 278 KAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAK 315
           K   + ++   D    +LE+++E+ +    ELE  LA+
Sbjct: 469 KVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAE 506

Length = 652

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 48/237 (20%), Positives = 96/237 (40%), Gaps = 16/237 (6%)

Query: 223 SSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLE------QMDA 276
             LR  LE +     +L  +    DA+   +E + ++++    EL ++LE      Q   
Sbjct: 282 RDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHN 341

Query: 277 EKAE-LEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLE 335
           E+AE L E  + ++    +L E+  ++E+E  E   A+   ++ +E  E ++ E   +  
Sbjct: 342 EEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401

Query: 336 ELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEE 395
           +   +L    +    +      +      + A + +  E VE   AL      KC +   
Sbjct: 402 DAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAL--LEAGKCPECG- 458

Query: 396 EQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLED 452
                 Q VE     ++  E + + E+LE     L E  + ++   ++ + L   ED
Sbjct: 459 ------QPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAED 509

Length = 880

>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

 Score = 49.6 bits (118), Expect = 4e-06
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 7/167 (4%)

Query: 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLE 286
           A L+       E  Q+  ++  +   L EK   + ++  + E  +  M  +  E   KLE
Sbjct: 274 ANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLE 333

Query: 287 KMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNE 346
           K+ +E    EE+I+ +++   EL   L K   S E  EL  +E     E+L REL+ +N 
Sbjct: 334 KLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQER----EKLTRELDKINI 389

Query: 347 SKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKL 393
               +  +V S ++EAQ       SLE+ +    +L   IT    ++
Sbjct: 390 QSDKLTKSVKSRKLEAQ---GIFKSLEKTLRQYDSLIQNITRSRSQI 433

Length = 622

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 51/188 (27%), Positives = 88/188 (46%)

Query: 228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEK 287
           ELE       ELE+KL++ + E   LE+K D+++ E   LEE+    + E+  LE ++++
Sbjct: 27  ELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERERLEAEVDE 86

Query: 288 MDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNES 347
             AE AKLEE+ EK EAE  +L+  L ++Q++ E +  +L EA             VN  
Sbjct: 87  ATAEVAKLEEEREKKEAETRQLQQELREAQEAHERARQELLEAAAAPTAPPHVAAPVNGE 146

Query: 348 KRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQ 407
           +   + N      + +T     +  EEE       + ++  + Q L+ E    + E +  
Sbjct: 147 QLEPDDNGEEASADLETDPDMKDRSEEERVTYAEKNERLQTQLQALKSELAAARDESKET 206

Query: 408 QIAKSNAE 415
                + E
Sbjct: 207 ANDILHEE 214

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

 Score = 48.0 bits (114), Expect = 6e-06
 Identities = 30/104 (28%), Positives = 63/104 (60%), Gaps = 4/104 (3%)

Query: 225 LRAELEAMIHR----TAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAE 280
           +R EL+  + R    T +   +   +  +  +L+EKL+++  EK EL ++LE+++AE  E
Sbjct: 108 VRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEE 167

Query: 281 LEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASE 324
           ++E+L++++ E ++LEE ++K+  E  +L+    + +  VE  E
Sbjct: 168 VQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPE 211

Length = 290

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 48.5 bits (116), Expect = 8e-06
 Identities = 53/238 (22%), Positives = 90/238 (37%), Gaps = 9/238 (3%)

Query: 223 SSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELE 282
             L  E+E +  R  +    L   +    +L E+ D++   +AELE  L        E E
Sbjct: 387 EELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE 446

Query: 283 EKLEK-------MDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLE 335
             LE           E +   E IE+      ELE  L   ++ VE  E +L  A   L 
Sbjct: 447 ALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DLV 505

Query: 336 ELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEE 395
           E +  +  + E +  +E  ++      +    +   L E      A + +      + EE
Sbjct: 506 EAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEE 565

Query: 396 EQWRMKQEV-ELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLED 452
           E    ++EV EL        E     E +      +A+ +  I+ L ++ ++LA L D
Sbjct: 566 EAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELND 623

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 57/240 (23%), Positives = 115/240 (47%), Gaps = 13/240 (5%)

Query: 228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEK 287
            LE +     ELE++LE + A   +LEE L+K+ + +  LE+  E+++  ++ELEE  E+
Sbjct: 292 RLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEE 351

Query: 288 MDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNES 347
            +     LEE+++++E    ELE  L K+ + ++  E  ++E   +L EL   L  + E 
Sbjct: 352 KNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEE 411

Query: 348 KRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITV-------------KCQKLE 394
              +E  +  +E E + +  +I  LEE++    +  + I               +  +  
Sbjct: 412 LEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEH 471

Query: 395 EEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFL 454
           E++     E+EL+++ +  +  K + E  E       E ++  + L + L+    L++ L
Sbjct: 472 EKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEEL 531

Length = 908

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 20/225 (8%)

Query: 226 RAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKL 285
           R E + ++    E  ++LE ++AE  DL E + + + E+ EL E++  +     ELEE+ 
Sbjct: 236 RDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEER 295

Query: 286 EKM-------DAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQ---LREATMQLE 335
           + +       DA+   +E + E++E    EL   L + + + +A   +   LRE    LE
Sbjct: 296 DDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE 355

Query: 336 ELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEE 395
           E   EL    E    +ES +       +    +I  LEEE+E  R       V     E+
Sbjct: 356 ERAEELR---EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAED 412

Query: 396 --EQWRMKQEVELQQIAKSNAEVKIKQEDLE-----VAAGKLAEC 433
             E+ R +++   ++ A+  A ++  +E +E     + AGK  EC
Sbjct: 413 FLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPEC 457

Length = 880

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 6/236 (2%)

Query: 222 ESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMD---AEK 278
           E  L   L  +    AEL++++ER + ++    E  D+ D    E EE+ E+++   AE 
Sbjct: 201 EKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEI 260

Query: 279 AELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQ 338
            +L E + + + E+ +L E++  +     ELE             +        + EEL+
Sbjct: 261 EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELE 320

Query: 339 RELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQW 398
                + +          +   EA+++    + LEE  E  R  + ++  + ++  E   
Sbjct: 321 DRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVE 380

Query: 399 RMKQEVEL--QQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL-ATLE 451
             ++E+E   ++I +          DL  A   L E ++    L ++   L ATL 
Sbjct: 381 DRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLR 436

Length = 880

>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 11/127 (8%)

Query: 220 LAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKA 279
           L++++  A LE +  R A LE +L+ ++ E       L     E+      L ++ AE A
Sbjct: 412 LSQNATPAALEDLRRRIAALELELDALERE-----AALGADHDER------LAELRAELA 460

Query: 280 ELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQR 339
            LE +L  ++A   + +E +E + A +AELE       D   A   QL E    L   Q 
Sbjct: 461 ALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQG 520

Query: 340 ELNLVNE 346
           E  LV  
Sbjct: 521 EEPLVFP 527

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 852

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 55/229 (24%), Positives = 100/229 (43%), Gaps = 20/229 (8%)

Query: 236 TAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMD------ 289
            AE ++K E+   E  ++EE ++++D     ++EK +Q++  + E E+            
Sbjct: 165 VAEFDRKKEKALEELEEVEENIERLDLI---IDEKRQQLERLRREREKAERYQALLKEKR 221

Query: 290 --------AEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQREL 341
                    EK  LE + E +E + A LE  L K  + +   E +L E    LEEL +++
Sbjct: 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKI 281

Query: 342 N-LVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRM 400
             L  E +  V+  +  +E E  ++   I   E E+E       ++  +  KL  E   +
Sbjct: 282 KDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL 341

Query: 401 KQEVELQQI--AKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL 447
           ++E+E ++    K   E    +E+LE    +L E  K       +LK  
Sbjct: 342 EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY 390

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 59/225 (26%), Positives = 113/225 (50%), Gaps = 10/225 (4%)

Query: 237 AELEQKLERMDAEKVDLEEKLDKMDAE-KAELEEKLEQMDAEKAELEEKLEKMDAEKAKL 295
            +   +L  ++ E+++ E   +K +AE + E+EE  +++   + EL E LE  +A K +L
Sbjct: 472 EKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEEL 531

Query: 296 EEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQ-LEELQRELNLVN------ESK 348
           EEK+EK+E    ELE    K Q      EL+  E  +Q L+EL  EL L+       E  
Sbjct: 532 EEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEEL 591

Query: 349 RIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQ 408
           R     +     E +   +++  L + +E+  A + ++    ++LE E  ++  + EL++
Sbjct: 592 RERLKELKKKLKELEERLSQLEELLQSLELSEAEN-ELEEAEEELESELEKLNLQAELEE 650

Query: 409 IA-KSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLED 452
           +   +  E++ K E+LE    +  +  +  + L ++L+ L  LE+
Sbjct: 651 LLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEE 695

Length = 908

>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342)

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 10/115 (8%)

Query: 204 KSGKHVESGNV-TTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDA 262
           K+GK V++  + +   T  E  +  +   +     ELE++L+ ++ E   +++ L K+  
Sbjct: 303 KAGKEVKAKELGSPAGTKTEIEVGVDFPELKEELKELEEELKELEEELEKIKKLLKKLP- 361

Query: 263 EKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQ 317
                ++   Q+  EK    E+LEK+   K KL E++E++E E  EL+  L    
Sbjct: 362 -----KKARGQLPPEK---REQLEKLLETKEKLSEELEELEEELKELKEELESLY 408

This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length. Length = 450

>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 30/142 (21%), Positives = 67/142 (47%), Gaps = 10/142 (7%)

Query: 264 KAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAEL-----EMALAKSQD 318
           K  LEE LE M  ++  L + L  +++ K KL +K++ ++ E A L     E+ L     
Sbjct: 149 KEGLEENLEGMKRDEELLNKDLNLINSIKPKLRKKLQALKEEIASLRQLADELNL-CDPL 207

Query: 319 SVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEM 378
            +E +  +LR  ++++ E +++L  + +  + +   + ++  +   +  +I   E+  E 
Sbjct: 208 ELEKARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSELLEEIAEAEKIREE 267

Query: 379 ERALSM----QITVKCQKLEEE 396
            R  S     ++  K   L++ 
Sbjct: 268 CRGWSAKEISKLKAKVSLLQKL 289

This domain is found in cell division proteins which are required for kinetochore-spindle association. Length = 321

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 13/183 (7%)

Query: 240 EQKLERMDAEKVDLEEKLDKMDAE----KAELEEKLEQMDAEKAELEEKLEKMDAEKAKL 295
           E+KL   +     + E+  K +AE    +A LE K E++   +AELE +L++   E  +L
Sbjct: 24  EKKLGSAEELAKRIIEEAKK-EAETLKKEALLEAK-EEVHKLRAELERELKERRNELQRL 81

Query: 296 EEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQREL-NLVNESKRIVESN 354
           E ++ + E        +L K ++++E  E +L      L+E + EL  L+ E +  +E  
Sbjct: 82  ERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELER- 140

Query: 355 VSSMEM-EAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSN 413
           +S +   EA+ +   +  +EEE   E A    I    ++ +EE  +  +E+    I +  
Sbjct: 141 ISGLTQEEAKEIL--LEEVEEEARHEAA--KLIKEIEEEAKEEADKKAKEILATAIQRYA 196

Query: 414 AEV 416
            + 
Sbjct: 197 GDH 199

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 52/228 (22%), Positives = 106/228 (46%), Gaps = 19/228 (8%)

Query: 226 RAELEAMIHRT---AELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELE 282
             E+E  + R     E E ++ER++  + DLEE + +      E  E+ E++    AELE
Sbjct: 491 VEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELE 550

Query: 283 EKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELN 342
            + E+     A+ EE+ E+   E AEL   LA+ ++ +E+ E ++R     + + + E+ 
Sbjct: 551 AEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIE 609

Query: 343 LVNES-KRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMK 401
            + E  + + E N    E        +   LE E +  R            +EE +   +
Sbjct: 610 RLREKREALAELNDERRE-RLAEKRERKRELEAEFDEAR------------IEEAREDKE 656

Query: 402 QEVE-LQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLA 448
           +  E L+Q+ +   E++ +++DL+   G +    + ++ L ++ ++L 
Sbjct: 657 RAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALE 704

Length = 880

>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 36/128 (28%), Positives = 76/128 (59%), Gaps = 11/128 (8%)

Query: 221 AESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEK-AELEEKLEQMDAEKA 279
           A + +R E+++      EL++++ +++ E+  L+++ D+   E+  +LE++L +++ E A
Sbjct: 392 AAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYA 451

Query: 280 ELEEKLEKMDAEKAKLE---EKIEKMEAEKAELEMALAKSQDSVEASELQ---LREATMQ 333
           +LEE+ +   AEKA ++   +  E++E  + ELE A  +  D  +A+ELQ   L E   +
Sbjct: 452 DLEEQWK---AEKAAIQGIQQIKEEIEQVRLELEQA-EREGDLAKAAELQYGKLPELEKR 507

Query: 334 LEELQREL 341
           L+  + +L
Sbjct: 508 LQAAEAKL 515

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins [Protein fate, Protein folding and stabilization]. Length = 852

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 33/171 (19%), Positives = 80/171 (46%), Gaps = 6/171 (3%)

Query: 232 MIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAE 291
           M++   +    ++++D EK  LE ++ ++     + + +LE ++     LE +LE ++ +
Sbjct: 1   MMNNNLKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQ 60

Query: 292 KAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQ------LEELQRELNLVN 345
            ++LE +I+++       E  L+  +D  E   L +     +       +EL   +  + 
Sbjct: 61  VSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIE 120

Query: 346 ESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEE 396
           + ++ +E     +E   + +      LEEEV   R    +++ K ++L+E+
Sbjct: 121 KLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEK 171

Length = 239

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 29/107 (27%), Positives = 59/107 (55%), Gaps = 5/107 (4%)

Query: 209 VESGNVTTQSTLAE--SSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAE 266
           V S  ++   +  E    L+ EL  +    AEL+++L  +  E  +L+++L  ++AE   
Sbjct: 53  VLSRYLSDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELER 112

Query: 267 LEEKLEQMDAEKA---ELEEKLEKMDAEKAKLEEKIEKMEAEKAELE 310
           L+++L ++    A   EL+E+  ++  E A+L+++ E +EAE   L+
Sbjct: 113 LQKELARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQ 159

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 24/103 (23%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 249 EKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAE 308
            KV  EE+  + +  + E   ++   +    +LEE +E+++ E ++L+ ++E+++ E  +
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEK 454

Query: 309 LEMALAKSQDSVEASELQLREATMQLEELQR-ELNLVNESKRI 350
           LE  L + +  V     + RE   +   ++R E  L  + KR+
Sbjct: 455 LESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV 497

Length = 652

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 10/97 (10%)

Query: 235 RTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKM------ 288
           R  EL+Q+L  +  E  +L+E+L ++  E  EL+++L  ++AE   L+++L ++      
Sbjct: 67  RLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSAN 126

Query: 289 ----DAEKAKLEEKIEKMEAEKAELEMALAKSQDSVE 321
               D E  +L E++ +++ E   LE    + Q++ +
Sbjct: 127 AIELDEENRELREELAELKQENEALEAENERLQENEQ 163

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed

 Score = 46.3 bits (111), Expect = 4e-05
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 15/74 (20%)

Query: 251 VDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKL-----------EKMDAEKAKLEE-- 297
           + LE  +D  +AE A LE++L +++ E   +E+KL           E ++ E+ KL E  
Sbjct: 801 LPLEGLIDV-EAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYE 859

Query: 298 -KIEKMEAEKAELE 310
            K+ K++   A L+
Sbjct: 860 EKLAKLKERLARLK 873

Length = 874

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 40/239 (16%), Positives = 93/239 (38%), Gaps = 25/239 (10%)

Query: 204 KSGKHVESGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAE 263
           + G  V++G V  +  L  + + A+   +  +   LE ++ R+ AE           D  
Sbjct: 60  REGDRVKAGQVLVE--LDATDVEADAAELESQVLRLEAEVARLRAEADSQAAIEFPDDLL 117

Query: 264 KAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEAS 323
            AE     E +  +++  E +   + A+   +  +I               + +  +   
Sbjct: 118 SAEDPAVPELIKGQQSLFESRKSTLRAQLELILAQI--------------KQLEAELAGL 163

Query: 324 ELQLREATMQLEELQRELNLV---NESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMER 380
           + QL+    QLE +  EL       E   +    +  +E E      ++  LE E+E+ +
Sbjct: 164 QAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLK 223

Query: 381 ALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQS 439
               QI     + ++ +   ++EV L+++ +  A+ ++ +    +   +    +  I+S
Sbjct: 224 R---QIDELQLERQQIEQTFREEV-LEELTE--AQARLAELRERLNKARDRLQRLIIRS 276

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 226 RAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKL 285
           +AEL  ++      + KL ++  E+     +L+   +E +  ++KLE++ A ++ L+ ++
Sbjct: 184 QAELTTLLSEQRAQQAKLAQLLEERKKTLAQLN---SELSADQKKLEELRANESRLKNEI 240

Query: 286 EKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLRE 329
              +A  AK  E     EA  A    A AK            + 
Sbjct: 241 ASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKPTAPEKM 284

Length = 420

>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 18/145 (12%)

Query: 224 SLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAEL-- 281
           SL+ E+  M       E+ +  +  E   L E L K + E  EL +KL+  + +K  L  
Sbjct: 31  SLKEEIAEMKKNEEHNEKLMAEIAQENKRLVEPLKKAEEEVEELRKKLKDYEKDKQSLKN 90

Query: 282 -EEKLEKMDAEKAKL-------EEKIEKMEAEKAELEMALAKSQDSV-EASELQ------ 326
            + +L++++ E   L       E++ EK+E E+ EL      +   V + + L+      
Sbjct: 91  LKARLKELEKELKNLKWESEVLEQRFEKVERERDELYDKFEAAIQDVQQKTGLKNLLLEQ 150

Query: 327 -LREATMQLEELQRELNLVNESKRI 350
            L     +LE+ + +LN V  +  +
Sbjct: 151 KLEALNEELEKKEAQLNEVLAAANL 175

This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localisation of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localised to regions of dynein regulation in mammalian cells. Length = 201

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 45.2 bits (108), Expect = 7e-05
 Identities = 31/94 (32%), Positives = 55/94 (58%), Gaps = 9/94 (9%)

Query: 222 ESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQ---MDAE- 277
           E +L  +LE +  R  ELE+K + ++ ++ +LE+K ++++    E  ++LE+   + AE 
Sbjct: 95  EENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEE 154

Query: 278 -KAELEEKLE-KMDAEKAKLEEKIE---KMEAEK 306
            K  L EK+E +   E A L ++IE   K EA+K
Sbjct: 155 AKEILLEKVEEEARHEAAVLIKEIEEEAKEEADK 188

Length = 520

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 56/224 (25%), Positives = 114/224 (50%), Gaps = 15/224 (6%)

Query: 238 ELEQKLERMDAEKVD--------LEEKLDKMDAEKAELE---EKLEQMDAEKAELEEKLE 286
           ELE+KL++ + E+++        L+EKL K+  E   L+   EKLE++  + AELE+KL+
Sbjct: 507 ELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLD 566

Query: 287 KMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNE 346
           +++ E A+L +++E++  E  E      K  +      L+L++A  +LE  ++EL  + E
Sbjct: 567 ELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEE 626

Query: 347 SKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVEL 406
                   ++  E   + +  ++  LE++   E     ++  +  +L  E   ++ E+E 
Sbjct: 627 ELDKAFEELAETEKRLEELRKELEELEKKYSEEE--YEELREEYLELSRELAGLRAELE- 683

Query: 407 QQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATL 450
            ++ K   E+K   E L+    +  + +K ++ L K L+ +  L
Sbjct: 684 -ELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEEL 726

Length = 880

>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELE---EKLEQMDAEKAELEEK 284
            L+ +  + AEL   L        DL++ +  + A  +  E    +L+ + AE A     
Sbjct: 54  ALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAA 113

Query: 285 LEKMDAEKAK-LEE----------KIEKMEAEKAELEMALAKSQDSVEASELQLREATMQ 333
            E    E A+ L+           ++E +  + A L   LA  + +++ASE + RE+  +
Sbjct: 114 AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK 173

Query: 334 LEELQRELNL 343
           + +L R LN+
Sbjct: 174 IADLGRRLNV 183

Length = 343

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 66/281 (23%), Positives = 124/281 (44%), Gaps = 6/281 (2%)

Query: 169 KNEKAVNRNLSASSPEIDLMDDFLEMEQLAAMPNNKSGKHVESGNVTTQSTLAESSLRAE 228
           +  K V +   A   E++     L  +    +   +            Q    E  L  E
Sbjct: 174 ELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQE 233

Query: 229 LEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKM 288
           +EA+  R AELE++ ER++  K  L E            EE+L +++    ELEEK+E++
Sbjct: 234 IEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERL 293

Query: 289 DAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESK 348
           +  + ++EE  E+       L   L +  + +++ E +L +   +LE+L+ EL  + E K
Sbjct: 294 EELEREIEEL-EEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEK 352

Query: 349 RIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQ 408
             +   +     E +    ++  LE+E+E       Q+    Q+L+EE    +    L++
Sbjct: 353 NELAKLLEERLKELEE---RLEELEKELEKALERLKQLEEAIQELKEEL--AELSAALEE 407

Query: 409 IAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLAT 449
           I +   E++ + E+LE    +L E  K ++    QL+S   
Sbjct: 408 IQEELEELEKELEELERELEELEEEIKKLEEQINQLESKEL 448

Length = 908

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 19/103 (18%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 281 LEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRE 340
             E+L ++  E A+L+E++ +++ + AEL+    + +  +   E +L     +L  +++ 
Sbjct: 64  ARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQL 123

Query: 341 ----LNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEME 379
               + L  E++ + E     ++ E + + A+   L+E  +  
Sbjct: 124 SANAIELDEENRELREELAE-LKQENEALEAENERLQENEQRR 165

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 44.4 bits (106), Expect = 1e-04
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 13/119 (10%)

Query: 227 AELEA---MIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEE 283
           A LEA   +     E E++L     E   LE++L +   ++  L+ KLE ++  + ELE+
Sbjct: 58  ALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQ---KEENLDRKLELLEKREEELEK 114

Query: 284 KLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREA-TMQLEELQREL 341
           K ++++ ++ +LE+K E++E    E    L         S L   EA  + LE+++ E 
Sbjct: 115 KEKELEQKQQELEKKEEELEELIEEQLQELE------RISGLTAEEAKEILLEKVEEEA 167

Length = 520

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 37/221 (16%), Positives = 92/221 (41%), Gaps = 27/221 (12%)

Query: 238 ELEQKLERM--DAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKL 295
           +L + L+++     K++   +  K       LEE ++ ++ E  ++E+++++++ E ++L
Sbjct: 54  KLSEALDKLRSYLPKLNPLREE-KKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISEL 112

Query: 296 EEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNV 355
           E +I+++E E   LE                     + L  L     +      + E  +
Sbjct: 113 ENEIKELEQEIERLE---------------PWGNFDLDLSLLLGFKYVSVFVGTVPEDKL 157

Query: 356 SSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAE 415
             +++E    +   N      +      + + +K  +L +E     +++  +++     E
Sbjct: 158 EELKLE----SDVENVEYISTDKGYVYVVVVVLK--ELSDEVEEELKKLGFERLELE--E 209

Query: 416 VKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLAT-LEDFLI 455
                E +     +L E +K  +SL ++LK LA    + L+
Sbjct: 210 EGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELL 250

Length = 646

>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 30/112 (26%), Positives = 63/112 (56%), Gaps = 4/112 (3%)

Query: 242 KLERMDAEKVD---LEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEK 298
           KLE  + E  +   L+ +LD++  E+  L ++LE+++ E  +L+ +L ++  EK +LE +
Sbjct: 54  KLESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENE 113

Query: 299 IEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRI 350
             +   E    +    + +D++++ ELQ   +  QL++L R+ N+ N +  I
Sbjct: 114 ELQYLREYNLFDRNNLQLEDNLQSLELQYEYSLNQLDKL-RKTNIFNATFHI 164

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway. Length = 356

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 22/209 (10%)

Query: 256 KLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAK 315
           +LD +  +   L  +L     EK   E + E   +E  K  ++ E +  E A     LAK
Sbjct: 75  QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAK 134

Query: 316 SQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEE 375
           +Q        +L   T Q ++LQ  L  + E +R +E+   S++   + + A    L+ +
Sbjct: 135 AQQ-------ELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQ 187

Query: 376 VEMERALSMQITVK----------CQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEV 425
           V   +  S QI  +           Q   EE  R     +    A    + +I Q+  ++
Sbjct: 188 VLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQI 247

Query: 426 AAGKLAECQKTIQSLGKQLKSLATLEDFL 454
           AA       + I+   +QL+ L T +  L
Sbjct: 248 AAR-----AEQIRERERQLQRLETAQARL 271

Length = 499

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 47/209 (22%), Positives = 95/209 (45%), Gaps = 8/209 (3%)

Query: 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKL-EQMDAEKAELEEKL 285
            +L+    +   LE +L+ +  E V  EE+L +   E+ E + +L +Q+   + +L+E  
Sbjct: 249 EKLQEDFEQLLSLELRLQHLHGELVADEERLAEEQEERQEAKNRLRQQLRTLEDQLKEAR 308

Query: 286 EKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVN 345
           ++++ E +    K+    +E   LE      +D+ +  +LQ      QL  ++ EL  V 
Sbjct: 309 DELNQELSAANAKLAADRSELELLEDQKGAFEDA-DIEQLQADLD--QLPSIRSELEEVE 365

Query: 346 ESKRIVESNVSSMEMEAQTMTAKI-NSLEEEVEM--ERALSMQITVKCQKLEEEQWRMKQ 402
                +      ++ + + +  KI   LE ++E   ER  +++     QK   E+     
Sbjct: 366 ARLDALTGKHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEEDLQAL 425

Query: 403 EVEL-QQIAKSNAEVKIKQEDLEVAAGKL 430
           E +L QQ+     E   ++ +LE+  G+L
Sbjct: 426 ESQLRQQLEAGKLEFNEEEYELELRLGRL 454

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 63/247 (25%), Positives = 121/247 (48%), Gaps = 24/247 (9%)

Query: 222 ESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAEL 281
            S L  E+  +  R  ELE+K ER++    +L++KL +++    ELEE+ E  +  KA+ 
Sbjct: 316 LSRLEEEINGIEERIKELEEKEERLE----ELKKKLKELEKRLEELEERHELYEEAKAKK 371

Query: 282 EE----KLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQD---SVEASELQLREATMQL 334
           EE    K         KLE+++E++E  K E+E  ++K       ++    +L++A  +L
Sbjct: 372 EELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL 431

Query: 335 EELQRELNLVN------ESKRIVES---NVSSMEMEAQTMTAKINSLEEE-VEMERALSM 384
           ++ + +  +          K ++E     +  +E E + +  K   L +E  E+E+ L  
Sbjct: 432 KKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKK 491

Query: 385 QITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQL 444
           +  +   K   EQ +  +E +L++      E++ K E+ E    KL + +  I+SL K+L
Sbjct: 492 ESELIKLKELAEQLKELEE-KLKKYNLE--ELEKKAEEYEKLKEKLIKLKGEIKSLKKEL 548

Query: 445 KSLATLE 451
           + L  L+
Sbjct: 549 EKLEELK 555

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 56/231 (24%), Positives = 109/231 (47%), Gaps = 17/231 (7%)

Query: 218 STLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEK-LDKMDAEKAELEEKLEQMDA 276
               +  L  +LE + +   ELE+  E++  +++  E + L+    E  EL E+L  +  
Sbjct: 524 EEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRT 583

Query: 277 EKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEE 336
            K ELEE  E++   K KL+E +E+  ++  EL  +L  S+   E  E +       LE 
Sbjct: 584 RKEELEELRERLKELKKKLKE-LEERLSQLEELLQSLELSEAENELEEAEEE-----LES 637

Query: 337 LQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEE 396
              +LNL  E + ++++ +  +E + + + A+I    + +E E  L           E+ 
Sbjct: 638 ELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQL----------EEKL 687

Query: 397 QWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL 447
           +   + E EL+Q+ +   E+  K  ++E    +L   +  ++ L K+L+ L
Sbjct: 688 EELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKL 738

Length = 908

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 43/204 (21%), Positives = 91/204 (44%), Gaps = 24/204 (11%)

Query: 264 KAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEAS 323
            A  +++L+Q+  E A LE+K+ +   ++AKLE++++ +E E A LE  L ++ D ++  
Sbjct: 33  AAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKL 92

Query: 324 ELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALS 383
             Q+ +   +L  L+ +     E +R +   +++++   +     +    E+ +    L+
Sbjct: 93  RKQIADLNARLNALEVQE---REQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLA 149

Query: 384 MQITVKCQKLEEEQWRMKQEVE--LQQIAKSNAEVKIKQEDLEVAAG-----------KL 430
           +        L   +      ++  L+Q+A   AE+  +Q +L                 L
Sbjct: 150 IYY----GALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLL 205

Query: 431 AECQKTIQSLGKQL----KSLATL 450
            E +KT+  L  +L    K L  L
Sbjct: 206 EERKKTLAQLNSELSADQKKLEEL 229

Length = 420

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 13/190 (6%)

Query: 267 LEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQ 326
           L+ +LE    E+ +L +K   ++ + + +  +IE       +LE AL  S +  E  E Q
Sbjct: 141 LQNQLEGCQRERNDLMKKFLALEGDVSDMRSRIE-------QLETALRHSTEKTEELEEQ 193

Query: 327 LREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINS----LEEEVEMERAL 382
            +EA    E +  E N +   +   +  +  +E + QT+T K       LE   ++E  L
Sbjct: 194 HKEAQSSSESMSAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAEL 253

Query: 383 SMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGK 442
                   Q+L++   + +   E  +      E +   EDL     +L   Q+    LG+
Sbjct: 254 ERMKGELKQRLKKMTIQRRD--EETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGE 311

Query: 443 QLKSLATLED 452
           +L SL +L D
Sbjct: 312 ELASLGSLRD 321

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 40/191 (20%), Positives = 96/191 (50%), Gaps = 6/191 (3%)

Query: 262 AEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVE 321
           AE   L E+LE +  E + L+ +L +++    +L +++     +  E+E  + + +   E
Sbjct: 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE 733

Query: 322 ASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERA 381
             + +L E    L  L++E+  V    + +E+ +  +E +   +   +N LE  +   R 
Sbjct: 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI 793

Query: 382 LSMQITVKCQKLEEEQWRMK---QEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQ 438
              +I  +  KLEEE  R++   +E+E Q++ +   E +  +++++    +  + ++ I+
Sbjct: 794 --PEIQAELSKLEEEVSRIEARLREIE-QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850

Query: 439 SLGKQLKSLAT 449
           S+ K++++L  
Sbjct: 851 SIEKEIENLNG 861

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 20/157 (12%)

Query: 226 RAELEAMIHR-TAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEK 284
            A+ EA   +  A LE K E +   + +LE +L +   E   LE +L Q        EE 
Sbjct: 40  EAKKEAETLKKEALLEAK-EEVHKLRAELERELKERRNELQRLERRLLQR-------EET 91

Query: 285 LEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNL- 343
           L++      K EE +EK E E +  E  L + ++ +E    +      Q EEL+R   L 
Sbjct: 92  LDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAE------QREELERISGLT 145

Query: 344 VNESKRIVESNVSSMEMEAQTMTAK-INSLEEEVEME 379
             E+K I+   +  +E EA+   AK I  +EEE + E
Sbjct: 146 QEEAKEIL---LEEVEEEARHEAAKLIKEIEEEAKEE 179

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 42/217 (19%), Positives = 94/217 (43%), Gaps = 20/217 (9%)

Query: 252 DLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEM 311
             +++L ++  E A LE+K+ +   ++A+LE++L+ ++ E A LE ++ +   +  +L  
Sbjct: 35  ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK 94

Query: 312 ALAKSQDSVEASELQLREATMQLEELQRELNLVNES---------KRIVESNVSSMEMEA 362
            +A     + A E+Q RE   +L E    L     +         +    S   ++   A
Sbjct: 95  QIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGA 154

Query: 363 --QTMTAKINSLEEEVEMERALSMQITVKCQKLE-------EEQWRMKQEVELQQ--IAK 411
                  +I++L+  ++   A+  +I  +  +L         +Q ++ Q +E ++  +A+
Sbjct: 155 LNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQ 214

Query: 412 SNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLA 448
            N+E+   Q+ LE      +  +  I S         
Sbjct: 215 LNSELSADQKKLEELRANESRLKNEIASAEAAAAKAR 251

Length = 420

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 43/201 (21%), Positives = 107/201 (53%), Gaps = 5/201 (2%)

Query: 249 EKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEK---IEKMEAE 305
           E+ DL E+L+ +++E AEL+E++E+ + ++ +  E  ++ D    + EE+   +E +EAE
Sbjct: 200 EEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAE 259

Query: 306 KAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTM 365
             +L   +A+++   E    ++R+   +LEEL+ E + +     + +++  ++E   + +
Sbjct: 260 IEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL 319

Query: 366 TAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEV-ELQQIAKS-NAEVKIKQEDL 423
             +   L + +E  R  +     + + L E+   +++   EL++ A    +E++  +E +
Sbjct: 320 EDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAV 379

Query: 424 EVAAGKLAECQKTIQSLGKQL 444
           E    ++ E ++ I+ L ++ 
Sbjct: 380 EDRREEIEELEEEIEELRERF 400

Length = 880

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 34/120 (28%), Positives = 62/120 (51%)

Query: 225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEK 284
           L   +E M       +++LE  +   ++LEEKL + + E   LE+K ++++ E   LEE+
Sbjct: 10  LEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEE 69

Query: 285 LEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLV 344
               + E+ +LE ++++  AE A+LE    K +      + +LREA    E  ++EL   
Sbjct: 70  AAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHERARQELLEA 129

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342)

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 223 SSLRAELEAMIHRTAELEQKLERMDAEK-----VDLEEKLDKMDAEKAELEEKLEQMDAE 277
             L  EL+ +     ++++ L+++  +       +  E+L+K+   K +L E+LE+++ E
Sbjct: 337 KELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEELEELEEE 396

Query: 278 KAELEEKLEKMDAEK 292
             EL+E+LE + +E 
Sbjct: 397 LKELKEELESLYSEG 411

This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length. Length = 450

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 45/234 (19%), Positives = 98/234 (41%), Gaps = 9/234 (3%)

Query: 218 STLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAE 277
           + L  S L A + A     A  +++L+++  E   LE+K+ +   ++A+LE++L+ ++ E
Sbjct: 15  TILLASLLSAAVLAAAFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETE 74

Query: 278 KAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQ-LEE 336
            A LE +L +   +  KL ++I  + A    LE+   + +  +     QL          
Sbjct: 75  IASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAE---QLAALQRSGRNP 131

Query: 337 LQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEE- 395
               L    +++R V   +    +       +I++L+  ++   A+  +I  +  +L   
Sbjct: 132 PPALLVSPEDAQRSVRLAIYYGAL-NPARAERIDALKATLKQLAAVRAEIAAEQAELTTL 190

Query: 396 --EQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL 447
             EQ   + ++      +     ++  E L     KL E +     L  ++ S 
Sbjct: 191 LSEQRAQQAKLAQLLEERKKTLAQLNSE-LSADQKKLEELRANESRLKNEIASA 243

Length = 420

>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional

 Score = 43.4 bits (103), Expect = 4e-04
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 262 AEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVE 321
            E   L+++LE    EKA+ +   E    E   LE    ++E ++ ELE  L + Q+   
Sbjct: 149 QEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAA 208

Query: 322 ASE----LQLREATMQ 333
            +      + +E T Q
Sbjct: 209 ETSQERKQKRKEITDQ 224

Length = 1123

>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 10/111 (9%)

Query: 226 RAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKL 285
              L A+      L+Q+LE    EK   +   +    E   LE    +++ ++ ELE +L
Sbjct: 141 ENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQL 200

Query: 286 EKM--DAEKAKLEEKIEKME-AEKAELEMALAKSQDSVEASEL---QLREA 330
           E++   A +   E K ++ E  ++A   + L       E   L   QLR+A
Sbjct: 201 EQLQEKAAETSQERKQKRKEITDQAAKRLEL----SEEETRILIDQQLRKA 247

Length = 1123

>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible proteins-interacting protein 1

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 241 QKLERMDAEKVDLEEKLDKMDAEKAELE-EKLEQMDAEKAELEEKLEKMDAEKAKLEEKI 299
           +KLE ++ E+ +    L++M  E  E + EK  +  A +AE+ + + KM    A    + 
Sbjct: 85  EKLEELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQK 144

Query: 300 EKMEAEKAELEMALAK 315
            K E +    +    +
Sbjct: 145 RKREQKARAAKERKER 160

Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity. Length = 217

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 29/107 (27%), Positives = 57/107 (53%)

Query: 238 ELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEE 297
           EL+ +L  +  +  +L+E+L+ ++   AELE +LE +  +   L E L+ ++     LEE
Sbjct: 76  ELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLESLEE 135

Query: 298 KIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLV 344
            I+++  E  EL   L +  + +     +L+E   +L+E  +EL  +
Sbjct: 136 SIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQSL 182

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 51/245 (20%), Positives = 110/245 (44%), Gaps = 30/245 (12%)

Query: 216 TQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEK------------------- 256
            +      SL      +  +  ELE+++E +  E  +LEEK                   
Sbjct: 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSE 300

Query: 257 -LDKMDAEKAELEEKLEQMDAEKAELEE---KLEKMDAEKAKLEEKIEKMEAEKAELEMA 312
             ++   E  E+E++L +++ E   +EE   +LE+ +    +L++K++++E    ELE  
Sbjct: 301 FYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEER 360

Query: 313 LAKSQDS----VEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAK 368
               +++     E   L+ R   +  E+L++EL  + ++K  +E  +S +      +  +
Sbjct: 361 HELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKE 420

Query: 369 INSLEEEV-EMERALSMQITVKCQKLEEEQWRMKQE--VELQQIAKSNAEVKIKQEDLEV 425
           I  L++ + E+++A         +  EE +  + +E   EL++I K   E++ K+  L  
Sbjct: 421 IKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRK 480

Query: 426 AAGKL 430
              +L
Sbjct: 481 ELREL 485

Length = 880

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 23/108 (21%), Positives = 52/108 (48%), Gaps = 10/108 (9%)

Query: 239 LEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLE-- 296
             ++L  +  E  +L+E+L ++  + AEL+++ +++  E + LE +LE++  E A+++  
Sbjct: 64  ARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQL 123

Query: 297 -EKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNL 343
                +++ E  EL   LA+ +        +      + E LQ     
Sbjct: 124 SANAIELDEENRELREELAELKQ-------ENEALEAENERLQENEQR 164

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 44/228 (19%), Positives = 112/228 (49%), Gaps = 9/228 (3%)

Query: 223 SSLRAELEAMIHRTAELEQKLERMDAEKVDLEEK---LDKMDAEKAELEEKLEQMDAEKA 279
           + + +EL  +     +LE++++ ++  K ++EE    L+ ++  K +LEEK+ +++    
Sbjct: 210 NEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIE 269

Query: 280 ELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQR 339
           EL++++E+++ EK K  +++++   E  +L     +  D +   E +L     ++  ++ 
Sbjct: 270 ELKKEIEELE-EKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328

Query: 340 ELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWR 399
            +  + E +  +E  +     E +    ++    E  E  +A   ++  + +K       
Sbjct: 329 RIKELEEKEERLEE-LKKKLKELEKRLEELEERHELYEEAKAKKEELE-RLKKRLTGLTP 386

Query: 400 MKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL 447
            K E EL+++ K+  E+   +E++     ++ E +K I+ L K ++ L
Sbjct: 387 EKLEKELEELEKAKEEI---EEEISKITARIGELKKEIKELKKAIEEL 431

Length = 880

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 24/111 (21%), Positives = 55/111 (49%), Gaps = 6/111 (5%)

Query: 224 SLRAELEAMIHRTAELEQ---KLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAE 280
           +L+A L+ +    AE+     +L  + +E+   + KL ++  E+ +   +L     E + 
Sbjct: 165 ALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNS---ELSA 221

Query: 281 LEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREAT 331
            ++KLE++ A +++L+ +I   EA  A+   A A ++ +   +     + T
Sbjct: 222 DQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRT 272

Length = 420

>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional

 Score = 42.2 bits (100), Expect = 6e-04
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 224 SLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQM--DAEKAEL 281
           +L+ +LE      A+ +   E    E V LE    +++ ++ ELE +LEQ+   A +   
Sbjct: 153 TLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQ 212

Query: 282 EEKLEKMDAEKAKLEEKIEKMEAE 305
           E K ++ +    +  +++E  E E
Sbjct: 213 ERKQKRKEI-TDQAAKRLELSEEE 235

Length = 1123

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 42.5 bits (100), Expect = 6e-04
 Identities = 25/89 (28%), Positives = 53/89 (59%), Gaps = 6/89 (6%)

Query: 222 ESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMD----AEKAELEEKLEQMDAE 277
           E+ LR + + +    A LE+++E+++A+    EEKL   +    + KAEL   L+Q  + 
Sbjct: 551 EAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASA 610

Query: 278 KAELEE-KLEKMDAEKAKLEEKIEKMEAE 305
           K+ LEE ++  ++A++ +LE+ + + ++ 
Sbjct: 611 KSGLEECEMAWLEAQE-QLEQMLLEGQSN 638

Length = 638

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 31/99 (31%), Positives = 60/99 (60%)

Query: 244 ERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKME 303
           E  + E+ +LEE++++M+ +    +++LE+ +    ELEEKL++ + E   LE+K +++E
Sbjct: 1   EEAEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELE 60

Query: 304 AEKAELEMALAKSQDSVEASELQLREATMQLEELQRELN 342
            E   LE   A S++  E  E ++ EAT ++ +L+ E  
Sbjct: 61  EENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEERE 99

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.4 bits (99), Expect = 7e-04
 Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 10/199 (5%)

Query: 238  ELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEE 297
            EL++  E+  A++    E+  K D  K + EE  ++ D  K + EE  +K DA K K EE
Sbjct: 1282 ELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA-KKADEAKKKAEEAKKKADAAKKKAEE 1340

Query: 298  KIEKMEAEKAELEMA---LAKSQDSVEASELQLREATMQLEELQR---ELNLVNESKRIV 351
              +  EA KAE E A      +++  EA+E +  EA  + +  ++   E    +E+K+  
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA 1400

Query: 352  ESNVSSMEMEAQTMTAKINSLE---EEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQ 408
            E +    +   +   AK  + E   +  E ++A   +   +  K  +E  +  +E +  +
Sbjct: 1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAE 1460

Query: 409  IAKSNAEVKIKQEDLEVAA 427
             AK  AE   K ++ +  A
Sbjct: 1461 EAKKKAEEAKKADEAKKKA 1479

Length = 2084

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 41.9 bits (98), Expect = 9e-04
 Identities = 55/226 (24%), Positives = 105/226 (46%), Gaps = 15/226 (6%)

Query: 222 ESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAEL 281
             S + ELE      A++ ++ +  + EK   EE+L  +  E+ EL+ +L +++  K + 
Sbjct: 254 IESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDD 313

Query: 282 EEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQREL 341
           EEKL++ + E  KLE++++K + E  ELE    K    +E       E   QLE+LQ +L
Sbjct: 314 EEKLKESEKELKKLEKELKKEKEEIEELE----KELKELEIKREAEEEEEEQLEKLQEKL 369

Query: 342 NLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMK 401
             +   + ++       E  +     K   LE + E E+   + + +  Q+ +  +   K
Sbjct: 370 EQL--EEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKK 427

Query: 402 QEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL 447
           +E++          V+  +E LE   GKL E ++ ++    +L   
Sbjct: 428 EELK---------IVEELEESLETKQGKLTEEKEELEKQALKLLKD 464

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 57/236 (24%), Positives = 112/236 (47%), Gaps = 12/236 (5%)

Query: 221 AESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAE 280
           A+  +  E+  +  R  EL+++++ +     +L++   K      EL E  E       E
Sbjct: 399 AKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE--EHRKELLEE 456

Query: 281 LEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRE 340
              +L++++ E  ++EEK  K+  E  ELE  L K     E+  ++L+E   QL+EL+ +
Sbjct: 457 YTAELKRIEKELKEIEEKERKLRKELRELEKVLKK-----ESELIKLKELAEQLKELEEK 511

Query: 341 LNLVN-ESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITV---KCQKLEEE 396
           L   N E           ++ +   +  +I SL++E+E    L  ++     K  +LEEE
Sbjct: 512 LKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEE 571

Query: 397 QWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLED 452
              + +E+E +   +S  E++ + ++LE    +  E +   + L ++ K L  LE+
Sbjct: 572 LAELLKELE-ELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEE 626

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 60/239 (25%), Positives = 117/239 (48%), Gaps = 29/239 (12%)

Query: 228 ELEAMIHRTAELEQKLERMDAEKVDLEE-KLDKMDAEKAELEEKLEQMDAEKAELEEKLE 286
           ELE  +    E  +  E   A+K +LE  K         +LE++LE+++  K E+EE++ 
Sbjct: 349 ELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEIS 408

Query: 287 KMDAEKAKLEEKIEKMEAEKAELEMA-------------------LAKSQDSVEASELQL 327
           K+ A   +L+++I++++    EL+ A                   L +    ++  E +L
Sbjct: 409 KITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKEL 468

Query: 328 REATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLE----EEVEMERALS 383
           +E   +  +L++EL  + E     ES +  ++  A+ +      L+    EE+E +    
Sbjct: 469 KEIEEKERKLRKELREL-EKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEY 527

Query: 384 MQITVKCQKLEEEQWRMKQEVE-LQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLG 441
            ++  K  KL+ E   +K+E+E L+++ K  AE++ K ++LE    +LAE  K ++ LG
Sbjct: 528 EKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELE---EELAELLKELEELG 583

Length = 880

>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 14/133 (10%)

Query: 238 ELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELE-----------EKLE 286
            LE+ LE M  ++  L + L+ +++ K +L +KL+ +  E A L             +LE
Sbjct: 151 GLEENLEGMKRDEELLNKDLNLINSIKPKLRKKLQALKEEIASLRQLADELNLCDPLELE 210

Query: 287 KMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNE 346
           K   E   L  KI +   +  EL+  L +   ++EA   +  E   ++ E ++   +  E
Sbjct: 211 KARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSELLEEIAEAEK---IREE 267

Query: 347 SKRIVESNVSSME 359
            +      +S ++
Sbjct: 268 CRGWSAKEISKLK 280

This domain is found in cell division proteins which are required for kinetochore-spindle association. Length = 321

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 16/117 (13%)

Query: 225 LRAELEAMI-HRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEE 283
           LRAELE  +  R  EL++   R+   +  L+ K++ +D ++  LE+K +++  ++  L+E
Sbjct: 63  LRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDE 122

Query: 284 KLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRE 340
           K       + +LEE I +   ++ ELE     +Q+  EA E+ L E     EE + E
Sbjct: 123 K-------EEELEELIAE---QREELERISGLTQE--EAKEILLEEVE---EEARHE 164

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 44/172 (25%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 217 QSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDA 276
           +S LA   L  E + +  R  E+ + L++  AE   L + L+ ++ E  +LE ++ Q+++
Sbjct: 7   KSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLES 66

Query: 277 EKAELEEKL----EKMDAEK-----AKLEEKIEKMEAEKAELEMALAKSQDSVEASELQL 327
           E  E+ E++    EK+ A K       L  +I+  +     LE  LA+  + +E  E ++
Sbjct: 67  EIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEI 126

Query: 328 REATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEME 379
            +   +LE L++ L    E++  +E  V+ +  E Q +++K   L+E+++ E
Sbjct: 127 EDLKERLERLEKNL---AEAEARLEEEVAEIREEGQELSSKREELKEKLDPE 175

Length = 239

>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional

 Score = 41.2 bits (98), Expect = 0.001
 Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 8/113 (7%)

Query: 239 LEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEK 298
           L+ KL R + E V   E L K      +++E L ++D E+ EL+ +LE++ AE+  L ++
Sbjct: 2   LDIKLIRENPEAVK--EALAKRG-FPLDVDE-LLELDEERRELQTELEELQAERNALSKE 57

Query: 299 IEKMEAEKAELEMALAKSQ---DSVEASELQLREATMQLEELQREL-NLVNES 347
           I + + +  + E  +A+ +   + ++A E +L E   +LEEL   + NL ++S
Sbjct: 58  IGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDS 110

Length = 425

>gnl|CDD|219934 pfam08614, ATG16, Autophagy protein 16 (ATG16)

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 34/125 (27%), Positives = 61/125 (48%)

Query: 216 TQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMD 275
            Q +   SS  A+        AE+EQKL ++  E  +L +K  ++      L ++LEQ+ 
Sbjct: 49  EQQSSHSSSPSADGPGSDAAIAEMEQKLAKLREELTELHKKRGELAQRLLLLNDELEQLR 108

Query: 276 AEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLE 335
            E  +LE+ + ++ +E   LE +I  +  E  E E      QD + +  ++L     +L 
Sbjct: 109 REIQQLEKTIAELRSEITSLETEIRDLREELQEKEKDNETLQDELISLNIELNALEEKLR 168

Query: 336 ELQRE 340
           +LQ+E
Sbjct: 169 KLQKE 173

Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway. Length = 194

>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional

 Score = 41.2 bits (98), Expect = 0.001
 Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEK 284
            R + +++I++T   E+ L+ +  +KV  +EK +K++A   EL+E L+  D E   ++ K
Sbjct: 528 ARNQADSLIYQT---EKTLKEL-GDKVPADEK-EKIEAAIKELKEALKGEDKE--AIKAK 580

Query: 285 LEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEA 322
            E++     KL E + +          A AK  D V+A
Sbjct: 581 TEELTQASQKLGEAMYQQAQAAQGAAGAAAKDDDVVDA 618

Length = 627

>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 28/115 (24%), Positives = 65/115 (56%), Gaps = 6/115 (5%)

Query: 237 AELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLE 296
            +L+++LE +     +L+ +++K+   + E EE+ E ++ E  +LE++L+K+ AE  K E
Sbjct: 72  EKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLE-ELKQLEKELKKLKAELEKYE 130

Query: 297 ----EKIEKMEAEKAELEMALAKSQDSVEASELQL-REATMQLEELQRELNLVNE 346
               E+IEK++ E    + A  +  D++ + +  L ++  +   +L++E  +  +
Sbjct: 131 KNDPERIEKLKEETKVAKEAANRWTDNIFSLKSYLSKKFGLDEAQLRKEFGIPED 185

This family of proteins includes MND1 from S. cerevisiae. The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair. Length = 188

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 57/226 (25%), Positives = 111/226 (49%), Gaps = 32/226 (14%)

Query: 228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEK-AELEEKLE 286
           +L+  I    +  +KLE +  +  +LE+KLD+++ E AEL ++LE++  E   ELEE+L+
Sbjct: 536 KLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLK 595

Query: 287 KM-----------DAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLE 335
           ++           DAEK +LE + ++++  + EL+ A  +    +  +E +L E   +LE
Sbjct: 596 ELEPFYNEYLELKDAEK-ELEREEKELKKLEEELDKAFEE----LAETEKRLEELRKELE 650

Query: 336 ELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEE 395
           EL+++ +   E    +      +  E   + A++  LE+  E       +I    +KL+E
Sbjct: 651 ELEKKYS--EEEYEELREEYLELSRELAGLRAELEELEKRRE-------EIKKTLEKLKE 701

Query: 396 EQWRM---KQEVELQQIAKSNAEV---KIKQEDLEVAAGKLAECQK 435
           E       K+E+E  + A    E    K+K+    +    L++  +
Sbjct: 702 ELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGE 747

Length = 880

>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 7/85 (8%)

Query: 228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEK 287
           E   +     EL++KLE +  EK +L ++L++++AE  E++E+L++++ E + LEE L+K
Sbjct: 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188

Query: 288 MDAEKAKL-------EEKIEKMEAE 305
           +  E   L       E  +E  E E
Sbjct: 189 LPGEVYDLKKRWDELEPGVELPEEE 213

Length = 290

>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 230 EAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMD 289
           EA+     EL+++ ER+  E  +LE++ D +D E  EL+E+ EQ++ E+ +   +    D
Sbjct: 66  EALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFD 125

Query: 290 AEKAKLEEKIEKMEAEKAELEMALAKSQ 317
               +LE+       +  EL+   + +Q
Sbjct: 126 RNNLQLED-----NLQSLELQYEYSLNQ 148

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway. Length = 356

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 15/92 (16%)

Query: 235 RTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMD----AEKAELEEKLEKMDA 290
           R AEL  + + +  E   LE++++K++A+ A+ EEKL   +    + KAEL   L++  +
Sbjct: 550 REAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQAS 609

Query: 291 EKAKLEEKIEKMEAEKAELEMALAKSQDSVEA 322
            K+ LE           E EMA  ++Q+ +E 
Sbjct: 610 AKSGLE-----------ECEMAWLEAQEQLEQ 630

Length = 638

>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724)

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 3/103 (2%)

Query: 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLD---KMDAEKAELEEKLEQMDAEKAELEE 283
           +ELE        L+ +L ++ + K D  +KL+    ++ E AE E   +++D+E AELE 
Sbjct: 79  SELEKHGFNVQALQSRLNKLLSLKDDQTKKLEERKGLEKEIAEKEISRQELDSEIAELER 138

Query: 284 KLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQ 326
           K+ ++  + A L+EK E  + E A L+   +K +  +  +EL+
Sbjct: 139 KILELQRQAALLKEKKEAEDKEIARLKSEASKIKQELVDAELE 181

This family contains several uncharacterized proteins found in Arabidopsis thaliana and other plants. This region is often found associated with Agenet domains and may contain coiled-coil. Length = 190

>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 253 LEEKLDKMDAEKAELEEKLEQMDAEKAELE-EKLEKMDAEKAKLEEKIEKMEAEKAELEM 311
           L+E  + +     EL +  E     +AE E  + + +  E  KL+ +I+++E    ELE 
Sbjct: 1   LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEA 60

Query: 312 ALAKSQDSVEASE 324
             A S +     E
Sbjct: 61  KPAASGEGGGGEE 73

This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease [Mobile and extrachromosomal element functions, Prophage functions]. Length = 384

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 59/260 (22%), Positives = 115/260 (44%), Gaps = 24/260 (9%)

Query: 213 NVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLE 272
               Q   A ++LR + +  I    EL +++E++  +K   E++  ++ AE  +L  +L+
Sbjct: 113 EANLQHEEALATLRKKHQDAI---NELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQLD 169

Query: 273 QMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREA-- 330
           Q+   K   E+K ++++++ ++L+ K+++++ +  +L    ++ Q        QL EA  
Sbjct: 170 QIAKAKLNAEKKAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEAEA 229

Query: 331 ------------TMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEM 378
                         QLEE +R L   +  +  +++ +  +E +  ++      LEEE E 
Sbjct: 230 QVSNLSKLKSQLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLR---EQLEEESEA 286

Query: 379 ERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQE-DLEVAAGKLAECQKTI 437
           +  L  Q  +     E +QWR K E E    A+   E+K K    +              
Sbjct: 287 KAELERQ--LSKANAEIQQWRSKFESEGALRAEELEELKKKLNQKISELEEAAEAANAKC 344

Query: 438 QSLGKQLKSLAT-LEDFLID 456
            SL K    L + LED  I+
Sbjct: 345 DSLEKTKSRLQSELEDLQIE 364

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|153335 cd07651, F-BAR_PombeCdc15_like, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 8/122 (6%)

Query: 280 ELEEKLE----KMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLE 335
           +LEEKL         ++ K++  +EK+  +K + E  L K+++  EA   ++   T+Q +
Sbjct: 86  DLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQ 145

Query: 336 ELQ-RELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLE 394
               +EL   N      +S+++S   + Q     +  L E    E   ++      Q LE
Sbjct: 146 LTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALD---DFQDLE 202

Query: 395 EE 396
           EE
Sbjct: 203 EE 204

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. Length = 236

>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 20/146 (13%)

Query: 312 ALAKSQDSVEASELQLREATMQLEELQRE-LNLVNESKRIVESNVSSMEMEAQTMTAKIN 370
           A    Q++    E Q      + EE + + L L  ES  +  S  S  E  A+     I 
Sbjct: 672 AELLEQEARGRLERQKMHDKAKAEEQRTKLLELQAESAAVESSGQSRAEALAEAEARLI- 730

Query: 371 SLEEEVEMERALSMQITVKCQKL------EEEQWRMKQEVELQQIAKSNA-EVKIKQEDL 423
             E E E+E+A      ++ + L      E E+ R +QE+EL+     N  E+   +E  
Sbjct: 731 --EAEAEVEQA-----ELRAKALRIEAEAELEKLRKRQELELEYEQAQNELEIAKAKELA 783

Query: 424 EVAAGKLAECQKTIQSLGKQ-LKSLA 448
           ++ A K    ++ +++LG++ L ++A
Sbjct: 784 DIEATKF---ERIVEALGRETLIAIA 806

Length = 850

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 61/270 (22%), Positives = 123/270 (45%), Gaps = 65/270 (24%)

Query: 238 ELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEE-------------- 283
           +LE++LE ++  K ++EE++ K+ A   EL+++++++     EL++              
Sbjct: 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE 447

Query: 284 ------------KLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREAT 331
                       +L++++ E  ++EEK  K+  E  ELE  L K     E+  ++L+E  
Sbjct: 448 EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKK-----ESELIKLKELA 502

Query: 332 MQLEELQRELNLVN-ESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITV-- 388
            QL+EL+ +L   N E           ++ +   +  +I SL++E+E    L  ++    
Sbjct: 503 EQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELE 562

Query: 389 -KCQKLEEEQWRMKQEVEL------------------------------QQIAKSNAEVK 417
            K  +LEEE   + +E+E                               +++ +   E+K
Sbjct: 563 KKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELK 622

Query: 418 IKQEDLEVAAGKLAECQKTIQSLGKQLKSL 447
             +E+L+ A  +LAE +K ++ L K+L+ L
Sbjct: 623 KLEEELDKAFEELAETEKRLEELRKELEEL 652

Length = 880

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 27/110 (24%), Positives = 57/110 (51%)

Query: 266 ELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASEL 325
           EL+ +L ++  + +EL+E+LE ++   A+LE ++E ++ +   L   L   ++ +E+ E 
Sbjct: 76  ELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLESLEE 135

Query: 326 QLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEE 375
            ++E   +L EL+++L    E  R     +       Q    ++ SL E+
Sbjct: 136 SIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQSLLEQ 185

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 208 HVESGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMD------AEKVDLEEKLDKMD 261
           H+E      +       L+    A I  ++ L + L+ +            L E+++K++
Sbjct: 32  HLEDLEEGEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKLE 91

Query: 262 AEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELE 310
           AE   LEE ++  +   +E+EE   K++   ++L+E++E +E    ELE
Sbjct: 92  AELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELE 140

Length = 660

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	554
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	100.0
KOG0933	1174	consensus Structural maintenance of chromosome pro	99.97
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.9
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.88
KOG0964	1200	consensus Structural maintenance of chromosome pro	99.86
KOG0996	1293	consensus Structural maintenance of chromosome pro	99.8
KOG0018	1141	consensus Structural maintenance of chromosome pro	99.75
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.59
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.51
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.2
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.15
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.94
PRK02224	880	chromosome segregation protein; Provisional	98.84
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.75
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.75
PRK02224	880	chromosome segregation protein; Provisional	98.73
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.65
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.53
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.44
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.43
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.42
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.37
PHA02562	562	46 endonuclease subunit; Provisional	98.32
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.29
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.22
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.19
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	98.17
PRK11637	428	AmiB activator; Provisional	98.16
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.15
PRK11637	428	AmiB activator; Provisional	98.11
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	98.09
PHA02562	562	46 endonuclease subunit; Provisional	98.06
PRK04778	569	septation ring formation regulator EzrA; Provision	98.03
PRK03918	880	chromosome segregation protein; Provisional	98.01
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.99
PRK03918	880	chromosome segregation protein; Provisional	97.97
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.95
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.94
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.94
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.93
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.91
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.89
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.89
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.89
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.88
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.87
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.87
PRK04778	569	septation ring formation regulator EzrA; Provision	97.86
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.83
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.83
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.77
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.76
PRK01156	895	chromosome segregation protein; Provisional	97.75
PRK09039	343	hypothetical protein; Validated	97.71
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.69
PRK04863	1486	mukB cell division protein MukB; Provisional	97.68
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.68
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.62
PRK09039	343	hypothetical protein; Validated	97.61
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.61
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.58
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.56
PRK01156	895	chromosome segregation protein; Provisional	97.55
PRK04863	1486	mukB cell division protein MukB; Provisional	97.55
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.46
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.4
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.32
KOG1003	205	consensus Actin filament-coating protein tropomyos	97.31
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	97.28
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.28
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	97.27
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.26
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	97.25
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.23
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	97.21
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.2
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.19
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.11
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	97.1
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	97.08
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	97.06
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	96.96
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.94
KOG0018	1141	consensus Structural maintenance of chromosome pro	96.91
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.88
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.86
KOG1850	391	consensus Myosin-like coiled-coil protein [Cytoske	96.82
KOG0979	1072	consensus Structural maintenance of chromosome pro	96.82
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.76
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	96.73
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.73
COG4372	499	Uncharacterized protein conserved in bacteria with	96.71
KOG4673	961	consensus Transcription factor TMF, TATA element m	96.69
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.67
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.67
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.64
PRK11281	1113	hypothetical protein; Provisional	96.62
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	96.61
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.6
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	96.56
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	96.49
KOG0979	1072	consensus Structural maintenance of chromosome pro	96.48
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	96.47
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	96.45
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	96.45
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	96.43
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	96.37
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.35
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	96.26
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	96.19
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.18
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.14
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.12
COG4372	499	Uncharacterized protein conserved in bacteria with	96.08
PRK10929	1109	putative mechanosensitive channel protein; Provisi	96.08
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	96.07
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	96.04
KOG4673	961	consensus Transcription factor TMF, TATA element m	96.04
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	95.9
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	95.83
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	95.82
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	95.8
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	95.73
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.67
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	95.66
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	95.62
COG5185	622	HEC1 Protein involved in chromosome segregation, i	95.57
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	95.56
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	95.52
KOG2991	330	consensus Splicing regulator [RNA processing and m	95.43
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	95.29
PF07058	351	Myosin_HC-like: Myosin II heavy chain-like; InterP	95.27
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	95.2
COG4477	570	EzrA Negative regulator of septation ring formatio	95.15
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.1
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	95.03
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	94.96
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	94.89
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.87
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	94.84
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	94.77
PRK10869	553	recombination and repair protein; Provisional	94.75
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	94.72
PF13514	1111	AAA_27: AAA domain	94.59
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.37
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.33
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	94.3
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	94.29
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	94.26
PRK10246	1047	exonuclease subunit SbcC; Provisional	94.1
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	94.09
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	93.92
KOG4807	593	consensus F-actin binding protein, regulates actin	93.91
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	93.89
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	93.83
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	93.76
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	93.73
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	93.66
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	93.64
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	93.58
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	93.52
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	93.51
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	93.23
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.06
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	93.01
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	92.86
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	92.79
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	92.77
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	92.68
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	92.65
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	92.56
COG2433	652	Uncharacterized conserved protein [Function unknow	92.33
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	92.17
KOG2991	330	consensus Splicing regulator [RNA processing and m	92.09
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	91.84
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	91.79
PRK10929	1109	putative mechanosensitive channel protein; Provisi	91.65
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	91.49
COG2433	652	Uncharacterized conserved protein [Function unknow	91.09
COG4477	570	EzrA Negative regulator of septation ring formatio	91.05
PRK11281	1113	hypothetical protein; Provisional	90.97
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	90.97
COG5185	622	HEC1 Protein involved in chromosome segregation, i	90.88
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	90.85
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	90.58
PF13514	1111	AAA_27: AAA domain	90.25
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	90.23
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	90.09
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	90.02
KOG0249	916	consensus LAR-interacting protein and related prot	89.98
PF10186	302	Atg14: UV radiation resistance protein and autopha	89.75
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	89.42
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	89.41
PF14992	280	TMCO5: TMCO5 family	89.23
KOG0288	459	consensus WD40 repeat protein TipD [General functi	88.97
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	88.83
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	88.78
PF13166	712	AAA_13: AAA domain	88.77
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	88.66
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	88.53
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	88.36
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	88.34
KOG0249	916	consensus LAR-interacting protein and related prot	88.34
PLN02939	977	transferase, transferring glycosyl groups	88.05
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	87.9
COG4026	290	Uncharacterized protein containing TOPRIM domain,	87.65
PF13166	712	AAA_13: AAA domain	87.3
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	86.59
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	86.48
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	86.37
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	86.09
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	85.86
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	85.57
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	85.24
PLN02939	977	transferase, transferring glycosyl groups	85.08
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	84.91
PRK09343	121	prefoldin subunit beta; Provisional	84.01
PRK10246	1047	exonuclease subunit SbcC; Provisional	83.99
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	83.93
KOG1937	521	consensus Uncharacterized conserved protein [Funct	83.71
PRK04406	75	hypothetical protein; Provisional	83.35
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	82.97
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	82.94
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	82.93
PRK11519	719	tyrosine kinase; Provisional	82.67
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	82.54
PRK03947	140	prefoldin subunit alpha; Reviewed	82.31
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	81.92
PF14992	280	TMCO5: TMCO5 family	81.75
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	81.43
PRK09343	121	prefoldin subunit beta; Provisional	81.12
KOG1962	216	consensus B-cell receptor-associated protein and r	81.09
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	81.01
PRK02119	73	hypothetical protein; Provisional	80.88
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	80.73
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	80.69
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	80.32
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	80.02

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=100.00  E-value=3.3e-45  Score=404.35  Aligned_cols=455  Identities=46%  Similarity=0.600  Sum_probs=326.3

Q ss_pred             CchHHHHHHHHHHHHHHHhcCCCCCCCC-----------------------hhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008764            1 MKLEFESRLLELQSKAETAKSEPSYHMD-----------------------PDLFEKLEFLEKENSALKMELLIQSEELE   57 (554)
Q Consensus         1 ~~~~le~~~~~~~~~~~~~~~~~~~~~~-----------------------~~l~~rl~~~eke~~~l~~el~~l~~el~   57 (554)
                      +|.+||.+|.++.++|..+.++++++++                       .+|+.|++++++++..|+|+++.+.++|+
T Consensus        86 ~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele  165 (769)
T PF05911_consen   86 IKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE  165 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999997776                       57999999999999999999999999999


Q ss_pred             HHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCCccc------------------ccc----ccccCc
Q 008764           58 IRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTND------------------HKS----AAASSN  115 (554)
Q Consensus        58 ~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~k~~~~~~------------------~~~----~~~~~~  115 (554)
                      +++.|+++..++++.+++||+|.+++|++|||+|||||.++||++|||.                  .|.    +.++++
T Consensus       166 ir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~  245 (769)
T PF05911_consen  166 IRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPSRPSSP  245 (769)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCCccccc
Confidence            9999999999999999999999999999999999999999999999882                  111    121222


Q ss_pred             cccc---ccccch---hhhhhHHHHHHh-------------------------hhhhc----------------------
Q 008764          116 CAES---LVDSQS---DSWERLNAVEMD-------------------------IRKMG----------------------  142 (554)
Q Consensus       116 ~~~~---~~~~~~---~~g~rl~~ve~~-------------------------~~K~~----------------------  142 (554)
                      +..+   +.....   -+..||+.||++                         ++|++                      
T Consensus       246 ~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql~~~~~~~~e~~~s~~~  325 (769)
T PF05911_consen  246 HDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQLKSSGQVSMELSSSQNT  325 (769)
T ss_pred             ccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC
Confidence            2111   111111   236777777652                         11210                      


Q ss_pred             ---------CCCCCCCCCCchhhHHHhhhhhhhhccccccCCCce--eccCchhhcchhhhhhhceeeecCCCCCc--cc
Q 008764          143 ---------GTEPNMSEPSCSDSWASALIAELDQFKNEKAVNRNL--SASSPEIDLMDDFLEMEQLAAMPNNKSGK--HV  209 (554)
Q Consensus       143 ---------~~~~~~~~~~~~~~~a~~li~~~~~~~~~~~~g~~~--v~~~~~~~l~~~~~emerlvtl~~t~~G~--~~  209 (554)
                               +..+.++.++|+++||++||++++||++.+..|+..  .+.+.+++|||||+||||||++|....+.  +.
T Consensus       326 ~~~~s~~s~se~~~dd~~s~s~SWAsaLiseldqfk~~k~~~~~~~~~~~~~~i~LMDDFlEmEkLA~~s~~~~~~~~~~  405 (769)
T PF05911_consen  326 SNPPSLTSMSEDGNDDEGSCSDSWASALISELDQFKNEKVISRSSSKTISSSDIDLMDDFLEMEKLAALSRDSSSPSSCS  405 (769)
T ss_pred             CCCCchhcccccCCCCCCcccchhHHHHhchHHHhccccccccccccCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence                     012246678999999999999999999888777655  56667889999999999999998654433  33


Q ss_pred             cCCcccCCCc------------------ch-hhhHHH---------HHHHHHHHHHHHHHHHH-----------------
Q 008764          210 ESGNVTTQST------------------LA-ESSLRA---------ELEAMIHRTAELEQKLE-----------------  244 (554)
Q Consensus       210 ~sG~~tGG~~------------------~~-~~~l~~---------ei~~l~~el~eLe~~l~-----------------  244 (554)
                      ++...+....                  +. ..|+..         .+..+..-+..++..+.                 
T Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wLqsv~k~v~~q~~~s~i~~ILedI~~al~~~~~~~~~~~~~~~~~~  485 (769)
T PF05911_consen  406 SSEVDSDSSVTLESSSKRESVLESDKLSDRIPEWLQSVLKLVLEQKEVSKISEILEDIEIALDSINNSSNCDDDSEEYES  485 (769)
T ss_pred             CccccccccccccccccccccccchhhcccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccccccccccchhhh
Confidence            2222111100                  00 011111         11111111111111111                 


Q ss_pred             --------------------HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-----------------H
Q 008764          245 --------------------RMDAEKVDLE-------EKLDKMDAEKAELEEKLEQMDAEKA-----------------E  280 (554)
Q Consensus       245 --------------------~le~ei~eLe-------~~l~~l~~e~~~l~~~ie~l~~el~-----------------~  280 (554)
                                          .+..++.++.       ..+..+.....++...++++..-+.                 +
T Consensus       486 ~~~sL~e~~~s~~~~s~eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqDv~s~~sE  565 (769)
T PF05911_consen  486 MEASLVEESKSMIEISQELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQDVSSMRSE  565 (769)
T ss_pred             hhhhHHHHHHHHHhhcccHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence                                0011111111       1111222223333344444433211                 1


Q ss_pred             HHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          281 LEEK--------------LEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNE  346 (554)
Q Consensus       281 ~e~e--------------l~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~  346 (554)
                      ++..              ..........+..+++.++.++..++..+..+..+++..+.++.+.+..+..++.++..+++
T Consensus       566 IK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ke  645 (769)
T PF05911_consen  566 IKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKE  645 (769)
T ss_pred             HHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111              11223455678888999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008764          347 SKRIVESNVSS--------------MEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKS  412 (554)
Q Consensus       347 ~~~~le~~L~~--------------le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~  412 (554)
                      ....++.++..              ++.++..+..++..|+.++.+++..+.++..+|.+++.++.+...+...+...  
T Consensus       646 S~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~--  723 (769)
T PF05911_consen  646 SNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLA--  723 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhcc--
Confidence            76665555544              48889999999999999999999999999999999999999998754332222  


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccc
Q 008764          413 NAEVKIKQE-DLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDT  457 (554)
Q Consensus       413 ~~~lk~~qe-el~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~~~  457 (554)
                      ..+++.+++ +|+.|++||++||+||.+||+||++|+|+.+|++|+
T Consensus       724 ~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLksLa~~~d~~~ds  769 (769)
T PF05911_consen  724 NEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKSLATPEDFLLDS  769 (769)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccC
Confidence            666777777 999999999999999999999999999999999875

The function of this family is unknown.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.4e-27  Score=260.03  Aligned_cols=367  Identities=18%  Similarity=0.221  Sum_probs=244.0

Q ss_pred             HHhhc-CCcc--ccccccccCcccccccccch------hhhhhHHH--HHHh--------------------hhhhcCCC
Q 008764           97 MACRA-SSTN--DHKSAAASSNCAESLVDSQS------DSWERLNA--VEMD--------------------IRKMGGTE  145 (554)
Q Consensus        97 ~~~k~-~~~~--~~~~~~~~~~~~~~~~~~~~------~~g~rl~~--ve~~--------------------~~K~~~~~  145 (554)
                      +.+.| .|.|  |++.|.+++..+.+|.|...      .+|||||+  |+|+                    ++||.++.
T Consensus       505 ~~f~Y~dP~~nfdrs~V~G~Va~Li~vkd~~~~tAle~~aGgrLynvVv~te~tgkqLLq~g~l~rRvTiIPLnKI~s~~  584 (1174)
T KOG0933|consen  505 YEFTYQDPEPNFDRSKVKGLVAKLIKVKDRSYATALETTAGGRLYNVVVDTEDTGKQLLQRGNLRRRVTIIPLNKIQSFV  584 (1174)
T ss_pred             cccccCCCCccchHHHHHHHHHHHheeCcchHHHHHHHHhcCcceeEEeechHHHHHHhhcccccceeEEEechhhhhcc
Confidence            44444 5554  66778888888878866544      35999985  4552                    46887665


Q ss_pred             CCCCC-------CCchhhHHHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCc
Q 008764          146 PNMSE-------PSCSDSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGN  213 (554)
Q Consensus       146 ~~~~~-------~~~~~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~  213 (554)
                      .++..       .+...-||.+||.|++.+.+  .|+||+++||+++++  .+.++...|+|.|||    +|| |+|+|+
T Consensus       585 ~s~~v~~~ak~v~~~~v~~al~Li~yd~~l~~amefvFG~tlVc~~~d~AKkVaf~~~i~~rsVTl----~GDV~dP~Gt  660 (1174)
T KOG0933|consen  585 LSPNVLQAAKNVGNDNVELALSLIGYDDELKKAMEFVFGSTLVCDSLDVAKKVAFDPKIRTRSVTL----EGDVYDPSGT  660 (1174)
T ss_pred             CCHhHHHHHHHhcCchHHHHHHHhcCCHHHHHHHHHHhCceEEecCHHHHHHhhcccccccceeee----cCceeCCCCc
Confidence            54332       24456799999999999999  999999999999999  778888889999999    999 999999


Q ss_pred             ccCCCcchhhhHH----------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-------------------HHH
Q 008764          214 VTTQSTLAESSLR----------AELEAMIHRTAELEQKLERMDAEK---VDLEEKLD-------------------KMD  261 (554)
Q Consensus       214 ~tGG~~~~~~~l~----------~ei~~l~~el~eLe~~l~~le~ei---~eLe~~l~-------------------~l~  261 (554)
                      +|||+++....+.          .+++..+.++..++.+|+.++..-   ..++.++.                   .+.
T Consensus       661 lTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~  740 (1174)
T KOG0933|consen  661 LTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLL  740 (1174)
T ss_pred             ccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHH
Confidence            9999987644332          333333444444444433332211   11111111                   111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          262 AEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKM----EAEKAELEMALAKSQDSVEASELQLREATMQLEEL  337 (554)
Q Consensus       262 ~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~l----e~eleele~el~~l~~el~~~e~~i~ele~ele~l  337 (554)
                      .++..+...+.+...++.+...-+..+..++..+++.+.+.    +..+.+++.++..+...+++....+..-+...+.+
T Consensus       741 ~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l  820 (1174)
T KOG0933|consen  741 DDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERL  820 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22333334444444445555555555566666666665553    34456666677666666666666666666677777


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
Q 008764          338 QRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVE---------LQQ  408 (554)
Q Consensus       338 ~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~---------~~~  408 (554)
                      +.+++.++.++...+.++..+...+..+..++..+...+......+......+......+.....++.         ...
T Consensus       821 ~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e  900 (1174)
T KOG0933|consen  821 QLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSE  900 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Confidence            77777777777666666666666666666666666666665555555555444444444433332221         112


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccCCccccccCc
Q 008764          409 IAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRAA  467 (554)
Q Consensus       409 ~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~~~~~~~~~~~~~  467 (554)
                      .......++.+..++......-+.|.+.+..+.+...|+......|+..++.|||.+..
T Consensus       901 ~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~  959 (1174)
T KOG0933|consen  901 KSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYD  959 (1174)
T ss_pred             hhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCC
Confidence            34455667777778999999999999999999999999999999999999999998763

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.90  E-value=1.4e-19  Score=215.57  Aligned_cols=108  Identities=23%  Similarity=0.264  Sum_probs=71.9

Q ss_pred             CCchhhHHHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCCCcchhhh-
Q 008764          151 PSCSDSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQSTLAESS-  224 (554)
Q Consensus       151 ~~~~~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~~~~~~~-  224 (554)
                      .+++.++|+++|.|||.|.+  .++||+|+||++++.  .++..+...-|+|||    +|+ +.++|+||||+...... 
T Consensus       588 ~~g~~~~a~dli~~d~~~~~~~~~~l~~t~Iv~~l~~A~~l~~~~~~~~riVTl----~G~~~~~~G~~tGG~~~~~~~~  663 (1163)
T COG1196         588 APGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKLRIKYRIVTL----DGDLVEPSGSITGGSRNKRSSL  663 (1163)
T ss_pred             ccchhHHHHHHhcCCHHHHHHHHHHhCCeEEecCHHHHHHHHHhcCCCceEEec----CCcEEeCCeeeecCCccccchh
Confidence            36678999999999999999  999999999999998  444333222399999    999 99999999996543222 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          225 -LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDA  262 (554)
Q Consensus       225 -l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~  262 (554)
                       ...++..+..++..+...+.....++..+...+..+..
T Consensus       664 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  702 (1163)
T COG1196         664 AQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLED  702 (1163)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11133344444444444444444444443333333333

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.88  E-value=1.4e-18  Score=208.75  Aligned_cols=91  Identities=21%  Similarity=0.290  Sum_probs=64.4

Q ss_pred             CchhhHHHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCCCcch-h---
Q 008764          152 SCSDSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQSTLA-E---  222 (554)
Q Consensus       152 ~~~~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~~~~-~---  222 (554)
                      .+..+||.++|.|++.|.+  .++||+++||++++.  .+..++    |+||+    +|+ |+++|+||||+... .   
T Consensus       596 ~~~~~~~~~~i~~~~~~~~~~~~~lg~~~v~~~l~~a~~~~~~~----~~vTl----dG~~~~~~G~~tgG~~~~~~~~~  667 (1164)
T TIGR02169       596 DGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKY----RMVTL----EGELFEKSGAMTGGSRAPRGGIL  667 (1164)
T ss_pred             CCchHHHHHHccCcHHHHHHHHHHCCCeEEEcCHHHHHHHhcCC----cEEEe----CceeEcCCcCccCCCCCCCCCcc
Confidence            4567899999999999998  899999999999988  443356    89999    999 99999999997321 1   


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          223 --SSLRAELEAMIHRTAELEQKLERMDAEK  250 (554)
Q Consensus       223 --~~l~~ei~~l~~el~eLe~~l~~le~ei  250 (554)
                        .+...++..+..++..+...+..+...+
T Consensus       668 ~~~~~~~~l~~l~~~l~~l~~~l~~l~~~~  697 (1164)
T TIGR02169       668 FSRSEPAELQRLRERLEGLKRELSSLQSEL  697 (1164)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1113444444444444444444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=6.6e-18  Score=184.26  Aligned_cols=344  Identities=15%  Similarity=0.178  Sum_probs=224.9

Q ss_pred             ChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCCcc--
Q 008764           28 DPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTN--  105 (554)
Q Consensus        28 ~~~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~k~~~~~--  105 (554)
                      .....+++..++..+.+.++.++.+..+......+++........+=.+-......|+.++....+....++...+.+  
T Consensus       427 l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~  506 (1200)
T KOG0964|consen  427 LKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVA  506 (1200)
T ss_pred             HHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence            345556777777788888888888888777778888777777766666666666666766666555554444443321  


Q ss_pred             -c---ccc----ccccCcc-----cccccccch-----hhhhhHH--HHHHh---------hhhhcC-------------
Q 008764          106 -D---HKS----AAASSNC-----AESLVDSQS-----DSWERLN--AVEMD---------IRKMGG-------------  143 (554)
Q Consensus       106 -~---~~~----~~~~~~~-----~~~~~~~~~-----~~g~rl~--~ve~~---------~~K~~~-------------  143 (554)
                       +   ++.    .++-++|     +..||+.+-     -+|.+||  +|++|         ++++..             
T Consensus       507 nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~  586 (1200)
T KOG0964|consen  507 NGIDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKA  586 (1200)
T ss_pred             hhhHHHHHHHHHhcccccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCch
Confidence             1   111    1222222     445566544     2589998  46654         233322             


Q ss_pred             CCCCCCCCCchhhHHHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCCC
Q 008764          144 TEPNMSEPSCSDSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQS  218 (554)
Q Consensus       144 ~~~~~~~~~~~~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~  218 (554)
                      ++......+.+. .-+..|.|+|+|.+  .+|||+|+||.+++.  .+...| .| -++||    +|| ++..|+||||+
T Consensus       587 r~v~yp~~sdai-Pli~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~ak~~-~l-n~ITl----~GDqvskkG~lTgGy  659 (1200)
T KOG0964|consen  587 RDVEYPKDSDAI-PLISKLRYEPQFDKALKHVFGKTIVCRDLEQALRLAKKH-EL-NCITL----SGDQVSKKGVLTGGY  659 (1200)
T ss_pred             hhccCCCCCCcc-chHHHhCcchhhHHHHHHHhCceEEeccHHHHHHHHHhc-CC-CeEEe----ccceecccCCccccc
Confidence            111111112233 23356779999999  999999999999999  444433 00 45555    999 99999999999


Q ss_pred             cchhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          219 TLAES----------SLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKM  288 (554)
Q Consensus       219 ~~~~~----------~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l  288 (554)
                      .+...          ....++..+++.+..++..+.....+|..+...+++...........+..+..++..+..+...+
T Consensus       660 ~D~krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v  739 (1200)
T KOG0964|consen  660 EDQKRSRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRV  739 (1200)
T ss_pred             hhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            86521          22356777777777777777777777777888888888887777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008764          289 DAEKAKLEEKIEKMEAEKAELEMALAKSQDSVE---------ASELQLREATMQLEELQRELNLVNESKRIVESNVSSME  359 (554)
Q Consensus       289 ~~kl~~Le~ele~le~eleele~el~~l~~el~---------~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le  359 (554)
                      ...+.-....|+.+...+..++.....++.++.         .....+..+..++..+..++..+....-.++.....++
T Consensus       740 ~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le  819 (1200)
T KOG0964|consen  740 QESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALE  819 (1200)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777776666665543         22355666777777777777766666555666666666


Q ss_pred             HHHH-HHHHHHHHHHHHHHH
Q 008764          360 MEAQ-TMTAKINSLEEEVEM  378 (554)
Q Consensus       360 ~ei~-~l~~~i~~Le~el~~  378 (554)
                      ..+. .+..++..|+.++.+
T Consensus       820 ~~l~~kL~~r~~~l~~ei~~  839 (1200)
T KOG0964|consen  820 ANLNTKLYKRVNELEQEIGD  839 (1200)
T ss_pred             HHHHHHHHhhhhHHHHHhhh
Confidence            6553 466666666555544

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1.5e-15  Score=169.45  Aligned_cols=243  Identities=20%  Similarity=0.300  Sum_probs=128.6

Q ss_pred             CchhhHHHhhhhhh-hhccc--cccCCCceeccCchh----hcch-h-hhhhhceeeecCCCCCc-cccCCcccCCCcch
Q 008764          152 SCSDSWASALIAEL-DQFKN--EKAVNRNLSASSPEI----DLMD-D-FLEMEQLAAMPNNKSGK-HVESGNVTTQSTLA  221 (554)
Q Consensus       152 ~~~~~~a~~li~~~-~~~~~--~~~~g~~~v~~~~~~----~l~~-~-~~emerlvtl~~t~~G~-~~~sG~~tGG~~~~  221 (554)
                      +-.+..-.+||.|. +.|++  ++++++|+||++++.    .|+. + |    |+|||    +|. |++||+||||+...
T Consensus       690 penvPRLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~rr~----RVvTL----~G~lIe~SGtmtGGG~~v  761 (1293)
T KOG0996|consen  690 PENVPRLFDLVKCKDEKFRPAFYFALRDTLVADNLEQATRIAYGKDRRW----RVVTL----DGSLIEKSGTMTGGGKKV  761 (1293)
T ss_pred             CCCcchHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHHHHhhcCCCce----EEEEe----cceeecccccccCCCCcC
Confidence            33456778999997 99999  889999999999997    4533 3 8    99999    999 99999999997532


Q ss_pred             -----h-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          222 -----E-------------SSLRAELEAMIHRTAELEQKLERMDAEK-------VDLEEKLDKMDAEKAELEEKLEQMDA  276 (554)
Q Consensus       222 -----~-------------~~l~~ei~~l~~el~eLe~~l~~le~ei-------~eLe~~l~~l~~e~~~l~~~ie~l~~  276 (554)
                           .             ..+..++..+......+..++..++..+       ..++..+..+......+...+..+..
T Consensus       762 ~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~  841 (1293)
T KOG0996|consen  762 KGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLES  841 (1293)
T ss_pred             CCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence                 0             1122333333333333333333333333       33334344444444444444444444


Q ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 008764          277 EKAELEEKLEKM---DAEKAKLEEKIEKMEAEKAELE------MALAKSQDSVEA--------SELQLREATMQLEELQR  339 (554)
Q Consensus       277 el~~~e~el~~l---~~kl~~Le~ele~le~eleele------~el~~l~~el~~--------~e~~i~ele~ele~l~~  339 (554)
                      .+..++..+...   ...+..+++.++.++.+++++.      ..+..++..+..        .+..+..+..+++.+..
T Consensus       842 ~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~  921 (1293)
T KOG0996|consen  842 QIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEA  921 (1293)
T ss_pred             HHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHH
Confidence            444444432211   1222333344444444444441      333333333322        12333444444444444


Q ss_pred             HHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          340 ELNLVNES-------KRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQ  402 (554)
Q Consensus       340 el~~l~~~-------~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~  402 (554)
                      ++..+...       +..++..+..++.++..+..+++.|..++...+....+++..+++...-+..++.
T Consensus       922 ~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~  991 (1293)
T KOG0996|consen  922 DIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKK  991 (1293)
T ss_pred             HHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444332       2344555555555666666666666655555555555555555555555555544

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=5.4e-15  Score=163.98  Aligned_cols=278  Identities=18%  Similarity=0.231  Sum_probs=167.0

Q ss_pred             hhHHHhhhhhhhhccc--cccCCCceeccCchh--hcch----hhhhhhceeeecCCCCCc-cccCCcccCCCcchhhhH
Q 008764          155 DSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLMD----DFLEMEQLAAMPNNKSGK-HVESGNVTTQSTLAESSL  225 (554)
Q Consensus       155 ~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~----~~~emerlvtl~~t~~G~-~~~sG~~tGG~~~~~~~l  225 (554)
                      ..++.+.|.|+++|++  .|+||+++||+++++  ++..    .|    ++|||    ||. |..+|.||||+.+.. |.
T Consensus       580 ~rlv~Dvi~ye~e~eka~~~a~gn~Lvcds~e~Ar~l~y~~~~r~----k~val----dGtl~~ksGlmsGG~s~~~-wd  650 (1141)
T KOG0018|consen  580 VRLVIDVINYEPEYEKAVQFACGNALVCDSVEDARDLAYGGEIRF----KVVAL----DGTLIHKSGLMSGGSSGAK-WD  650 (1141)
T ss_pred             eEEEEEecCCCHHHHHHHHHHhccceecCCHHHHHHhhhcccccc----eEEEe----eeeEEeccceecCCccCCC-cC
Confidence            5688899999999999  999999999999998  4422    36    89999    999 999999999998855 88


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          226 RAELEAMIHRTAELEQKLERMD----------AEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKL  295 (554)
Q Consensus       226 ~~ei~~l~~el~eLe~~l~~le----------~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~L  295 (554)
                      ..+++.|......|..+|..+.          ..+..+++.+..+..++..+...+.....++...+..+..+..++..+
T Consensus       651 ek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i  730 (1141)
T KOG0018|consen  651 EKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEI  730 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHH
Confidence            8888888887777776666553          333445555555555555555556666666666666666667777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008764          296 EEKIEKMEAEKAELEMALAKSQDSVEASE-----LQLR---------EATMQLEELQRELNLVNESKRIVESNVSSMEME  361 (554)
Q Consensus       296 e~ele~le~eleele~el~~l~~el~~~e-----~~i~---------ele~ele~l~~el~~l~~~~~~le~~L~~le~e  361 (554)
                      .+++...+..+.+|+..+..++..+...-     -.|.         +...+..+++.++..+...+.-. .+ ......
T Consensus       731 ~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe-~~-~d~~~~  808 (1141)
T KOG0018|consen  731 KRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFE-KQ-KDTQRR  808 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhe-ec-ccHHHH
Confidence            88888888888888888888777664220     0011         11222233444444443332111 11 223333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          362 AQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLG  441 (554)
Q Consensus       362 i~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~  441 (554)
                      +...+..+..++.+++........+...+..+ .+++...    .+.......++......+..+...+..+...|..++
T Consensus       809 ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~----k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~e  883 (1141)
T KOG0018|consen  809 VERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKN----KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIE  883 (1141)
T ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            44444444444444444444333334334433 3333211    112233444444444445555555555555555555


Q ss_pred             HHHHHhh
Q 008764          442 KQLKSLA  448 (554)
Q Consensus       442 ~ql~~L~  448 (554)
                      ..+..+.
T Consensus       884 s~ie~~~  890 (1141)
T KOG0018|consen  884 SKIERKE  890 (1141)
T ss_pred             hHHHHHH
Confidence            5544443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.59  E-value=1.4e-10  Score=139.84  Aligned_cols=107  Identities=18%  Similarity=0.274  Sum_probs=64.4

Q ss_pred             chhhHHHhhhhhhhhccc--cccCCCceeccCchh--hcc----hhhhhhhceeeecCCCCCc-cccCCcccCCCcch--
Q 008764          153 CSDSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLM----DDFLEMEQLAAMPNNKSGK-HVESGNVTTQSTLA--  221 (554)
Q Consensus       153 ~~~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~----~~~~emerlvtl~~t~~G~-~~~sG~~tGG~~~~--  221 (554)
                      +...++.+++.|++.+..  .+.+|.+.+|++++.  .++    .+.    ++++.    +|+ +..+|.++||+...  
T Consensus       599 ~~~~~~~dl~~~~~~~~~~~~~~~~~~~ivt~l~~a~~~~~~~~~~g----~~v~~----~G~~~~~gg~~~~~~~~~~~  670 (1179)
T TIGR02168       599 GFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGY----RIVTL----DGDLVRPGGVITGGSAKTNS  670 (1179)
T ss_pred             chhHHHHHHhcccHhHHHHHHHHhCCceEeCCHHHHHHHHHHcCCCc----eEEec----CCEEEcCCceEecCcccccc
Confidence            446778899999888887  678888888888775  322    233    66777    887 77777776665311  


Q ss_pred             -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          222 -ESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAEL  267 (554)
Q Consensus       222 -~~~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l  267 (554)
                       ...+..++..+...+..+...+..+..++..+...+..+...+..+
T Consensus       671 ~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~  717 (1179)
T TIGR02168       671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL  717 (1179)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2233445555555555555555555444444444444444333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.51  E-value=4.3e-10  Score=135.55  Aligned_cols=116  Identities=25%  Similarity=0.371  Sum_probs=77.8

Q ss_pred             CCc-cccCC-cc-cCCCcchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          205 SGK-HVESG-NV-TTQSTLAE-SSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAE  280 (554)
Q Consensus       205 ~G~-~~~sG-~~-tGG~~~~~-~~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~  280 (554)
                      +|+ +.++| .+ +||+.... .....++..+..++..+...+..+...+..+...+..+...+..+...+..+...+..
T Consensus       644 ~g~~v~~~G~~~~~gg~~~~~~~~~~~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  723 (1179)
T TIGR02168       644 GYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE  723 (1179)
T ss_pred             CceEEecCCEEEcCCceEecCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899 99988 44 57764222 2344677888888888888888888888888888888888888888888887776666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          281 LEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSV  320 (554)
Q Consensus       281 ~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el  320 (554)
                      ++..+..+...+..+...+..+..++..+...+..+..++
T Consensus       724 ~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~  763 (1179)
T TIGR02168       724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI  763 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555554444444444444443333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.20  E-value=2.2e-06  Score=103.59  Aligned_cols=46  Identities=20%  Similarity=0.331  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          233 IHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEK  278 (554)
Q Consensus       233 ~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el  278 (554)
                      ..++..+...+..+..++..+...+..+...+..+...+..+...+
T Consensus       673 ~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~  718 (1164)
T TIGR02169       673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI  718 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667788888888888888888777766666665555554444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.15  E-value=1.6e-06  Score=104.49  Aligned_cols=54  Identities=35%  Similarity=0.545  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          235 RTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKM  288 (554)
Q Consensus       235 el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l  288 (554)
                      ++..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+
T Consensus       668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  721 (1163)
T COG1196         668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEEL  721 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566778888888888888888888888888888888877776555544443333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.94  E-value=4.2e-05  Score=87.23  Aligned_cols=85  Identities=18%  Similarity=0.172  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHH-HHhcCCCC--CCCChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhH
Q 008764            4 EFESRLLELQSKA-ETAKSEPS--YHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDS   80 (554)
Q Consensus         4 ~le~~~~~~~~~~-~~~~~~~~--~~~~~~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~   80 (554)
                      .|+++|.+++.+. .....+.+  +-....|...++.++..+..|..++.++..++....++....+..+..+.+.+.-.
T Consensus       376 ~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~  455 (1074)
T KOG0250|consen  376 RLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENI  455 (1074)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777777776 22222211  11122344444444555555555555555555444444444444444444444444


Q ss_pred             HHHHHHHH
Q 008764           81 IKKVAKLE   88 (554)
Q Consensus        81 ~~ki~kLE   88 (554)
                      ...+..|.
T Consensus       456 ~~~l~~lk  463 (1074)
T KOG0250|consen  456 SEELKDLK  463 (1074)
T ss_pred             HHHHHHHH
Confidence            44444443

>PRK02224 chromosome segregation protein; Provisional

Probab=98.84  E-value=0.00019  Score=84.67  Aligned_cols=78  Identities=21%  Similarity=0.149  Sum_probs=40.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCC--CCChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhH
Q 008764            3 LEFESRLLELQSKAETAKSEPSY--HMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDS   80 (554)
Q Consensus         3 ~~le~~~~~~~~~~~~~~~~~~~--~~~~~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~   80 (554)
                      .+|++++.++...+.....+...  .....+...+..++..+..+..++..+.+++......+...+..+..+..+..+.
T Consensus       317 ~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el  396 (880)
T PRK02224        317 EELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL  396 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777766544433110  0113445555555555555555555555555555555555555555544444443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.75  E-value=1.9e-05  Score=78.22  Aligned_cols=133  Identities=21%  Similarity=0.289  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          307 AELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQI  386 (554)
Q Consensus       307 eele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~  386 (554)
                      ..++..+.............+.+....+..+...+..+......++..+..++.++..+...+..++..-.+.......+
T Consensus        95 ~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~  174 (237)
T PF00261_consen   95 EELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEY  174 (237)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence            33333333333333333333333334444444444444444444444444444444444444444444444444444455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          387 TVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQL  444 (554)
Q Consensus       387 e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql  444 (554)
                      +.++..|...+.......     ......+..++..|+.+...|.........+...+
T Consensus       175 e~~i~~L~~~lkeaE~Ra-----e~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el  227 (237)
T PF00261_consen  175 EEKIRDLEEKLKEAENRA-----EFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL  227 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555444321     22333333444444444444444444444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.75  E-value=0.00025  Score=79.59  Aligned_cols=44  Identities=20%  Similarity=0.313  Sum_probs=31.8

Q ss_pred             CCchhhHHHhhhhhhhhccc--cccCCC---ceeccCchh--hcchhhhhh
Q 008764          151 PSCSDSWASALIAELDQFKN--EKAVNR---NLSASSPEI--DLMDDFLEM  194 (554)
Q Consensus       151 ~~~~~~~a~~li~~~~~~~~--~~~~g~---~~v~~~~~~--~l~~~~~em  194 (554)
                      +.|.-|....||.+++.|..  +-.-||   .+||++-++  .++..|-.|
T Consensus       521 ~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m  571 (1200)
T KOG0964|consen  521 PNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKM  571 (1200)
T ss_pred             ccccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhc
Confidence            46677888999999999998  777777   567777666  444444333

>PRK02224 chromosome segregation protein; Provisional

Probab=98.73  E-value=0.00058  Score=80.50  Aligned_cols=34  Identities=24%  Similarity=0.093  Sum_probs=14.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhc
Q 008764           33 EKLEFLEKENSALKMELLIQSEELEIRAIERDLS   66 (554)
Q Consensus        33 ~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~   66 (554)
                      ..+..+.+++..+...+..+..++..+..+++..
T Consensus       363 ~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el  396 (880)
T PRK02224        363 EEAAELESELEEAREAVEDRREEIEELEEEIEEL  396 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444444433

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.65  E-value=0.00014  Score=83.10  Aligned_cols=175  Identities=18%  Similarity=0.300  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 008764          228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKM---EA  304 (554)
Q Consensus       228 ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~l---e~  304 (554)
                      ..+.++..+............+...++..+..+...+..++..+..+..++..+-..+..+...+..++..+...   ..
T Consensus       779 ~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~  858 (1293)
T KOG0996|consen  779 SVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKK  858 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHH
Confidence            566666677777777777777777777777777777777777777777776666666666666666666653332   12


Q ss_pred             HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          305 EKAELEMALAKSQDSVEAS------ELQLREATMQLEELQRELNLVNE-SKRIVESNVSSMEMEAQTMTAKINSLEEEVE  377 (554)
Q Consensus       305 eleele~el~~l~~el~~~------e~~i~ele~ele~l~~el~~l~~-~~~~le~~L~~le~ei~~l~~~i~~Le~el~  377 (554)
                      .+.+++..+..+..+++.+      +.++..+...+..+-...-..++ .+..+..++..+..++..+...+......+.
T Consensus       859 ~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~  938 (1293)
T KOG0996|consen  859 RLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIA  938 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHH
Confidence            2333344444444444443      23344444444333322222211 2334445555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          378 MERALSMQITVKCQKLEEEQWRMKQ  402 (554)
Q Consensus       378 ~~~~~~~e~e~kl~eLe~el~~~~~  402 (554)
                      +......+++..+..++.++..+..
T Consensus       939 k~q~~l~~le~~~~~~e~e~~~L~e  963 (1293)
T KOG0996|consen  939 KAQKKLSELEREIEDTEKELDDLTE  963 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555544

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.53  E-value=0.0041  Score=70.52  Aligned_cols=72  Identities=22%  Similarity=0.159  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 008764           30 DLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRA  101 (554)
Q Consensus        30 ~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~k~  101 (554)
                      .+..++..+...+.....++.....+++....++...+-....+.+........++.+..+|..+++-++.+
T Consensus       396 ~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l  467 (1174)
T KOG0933|consen  396 TLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSL  467 (1174)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            466777777777778888888888888888888888888888888888888888888888888888877764

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.44  E-value=0.00058  Score=83.64  Aligned_cols=138  Identities=30%  Similarity=0.404  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEK  306 (554)
Q Consensus       227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~el  306 (554)
                      .++.....++..+..++...+....+++.....+..++..+...+..-.....+.+..+..+......++..+..+..++
T Consensus       838 e~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~  917 (1930)
T KOG0161|consen  838 EEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERL  917 (1930)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57777888888888888888888888888888887777777776655555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008764          307 AELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQT  364 (554)
Q Consensus       307 eele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~  364 (554)
                      +..+.....++.+....+..+..++..++++...+.++..++...+.++..++.++..
T Consensus       918 e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~  975 (1930)
T KOG0161|consen  918 EEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS  975 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555444444444444444444444444444444444444444443333333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.43  E-value=0.00074  Score=77.37  Aligned_cols=171  Identities=22%  Similarity=0.373  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          279 AELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEA-------SELQLREATMQLEELQRELNLVNESKRIV  351 (554)
Q Consensus       279 ~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~-------~e~~i~ele~ele~l~~el~~l~~~~~~l  351 (554)
                      ..++..+...+.++..+.++++.....+..+...+...+.++..       ...++..+.+.+..+..+...++......
T Consensus       284 ~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~  363 (1074)
T KOG0250|consen  284 NNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREI  363 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444333333333332       23334444444444444444444444444


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHhhHHHHHHHHHHHHHHHH
Q 008764          352 ESNVSSMEMEAQTMTAKINSLEEEV-EMERALSMQITVKCQKLEEEQWRMKQEVE-L-QQIAKSNAEVKIKQEDLEVAAG  428 (554)
Q Consensus       352 e~~L~~le~ei~~l~~~i~~Le~el-~~~~~~~~e~e~kl~eLe~el~~~~~e~~-~-~~~~~~~~~lk~~qeel~~a~~  428 (554)
                      ++.+...+..+..+...|..++.+. ........+.+.+++.|..+.+.+..... + .....+...+...+++......
T Consensus       364 ~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~  443 (1074)
T KOG0250|consen  364 ENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEG  443 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            5555555555555555554444444 22233333333344444333333332110 0 0123344445555556666778


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 008764          429 KLAECQKTIQSLGKQLKSLAT  449 (554)
Q Consensus       429 kl~e~q~tI~~L~~ql~~L~~  449 (554)
                      ++..+.+.|......++.|..
T Consensus       444 ~i~~l~k~i~~~~~~l~~lk~  464 (1074)
T KOG0250|consen  444 EILQLRKKIENISEELKDLKK  464 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            888888888888888888874

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.42  E-value=0.00069  Score=83.03  Aligned_cols=52  Identities=37%  Similarity=0.556  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          273 QMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASE  324 (554)
Q Consensus       273 ~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e  324 (554)
                      .+..+....+..+..+...+..++..+.++..+...++..+..+...+...+
T Consensus       954 k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~e 1005 (1930)
T KOG0161|consen  954 KLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEE 1005 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444444444444444444444444444444444443333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.37  E-value=0.00062  Score=73.73  Aligned_cols=179  Identities=22%  Similarity=0.315  Sum_probs=143.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          224 SLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKL-EQMDAEKAELEEKLEKMDAEKAKLEEKIEKM  302 (554)
Q Consensus       224 ~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~i-e~l~~el~~~e~el~~l~~kl~~Le~ele~l  302 (554)
                      ..+.+|..|+.+|..+-.++..++++-..|+..+..++.-...-...| ..++.++..+...+.........++.++..+
T Consensus        39 rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl  118 (546)
T KOG0977|consen   39 REKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKL  118 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356789999999999988888888888888877776665432222222 2345567777777777777788888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          303 EAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERAL  382 (554)
Q Consensus       303 e~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~  382 (554)
                      +.+++++...+.+..........++..+...+..++.++..+...+..++..+..+..+...+...|..+...++++...
T Consensus       119 ~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etll  198 (546)
T KOG0977|consen  119 REELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLL  198 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            88888888888888877888888888888888999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 008764          383 SMQITVKCQKLEEEQWRMKQ  402 (554)
Q Consensus       383 ~~e~e~kl~eLe~el~~~~~  402 (554)
                      ..++..+++.|.+++.-+..
T Consensus       199 r~d~~n~~q~Lleel~f~~~  218 (546)
T KOG0977|consen  199 RVDLQNRVQTLLEELAFLKR  218 (546)
T ss_pred             HHHHHhHHHHHHHHHHHHHh
Confidence            88888888888888876663

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.32  E-value=0.001  Score=74.40  Aligned_cols=8  Identities=13%  Similarity=0.140  Sum_probs=3.5

Q ss_pred             CcCCcccc
Q 008764          473 TVGESWKL  480 (554)
Q Consensus       473 ~~~~~~~~  480 (554)
                      .|...|.+
T Consensus       459 ~g~~~~~~  466 (562)
T PHA02562        459 RGREDFSY  466 (562)
T ss_pred             CCCCccCh
Confidence            34444533

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.29  E-value=0.025  Score=68.78  Aligned_cols=72  Identities=14%  Similarity=0.102  Sum_probs=48.7

Q ss_pred             ChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 008764           28 DPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMAC   99 (554)
Q Consensus        28 ~~~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~   99 (554)
                      ..++...+...+..+.....++......+.....+....+...+.+..+.....+++.++++++..+..++.
T Consensus       464 ~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~  535 (1201)
T PF12128_consen  464 TEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLD  535 (1201)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            345666777777777777777777777776666666666666666666666666667777777666665554

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.22  E-value=0.0099  Score=64.64  Aligned_cols=52  Identities=27%  Similarity=0.461  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          226 RAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAE  277 (554)
Q Consensus       226 ~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~e  277 (554)
                      ...++....+..+|......++.+...++.++..+...+.........+...
T Consensus       142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~  193 (546)
T PF07888_consen  142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ  193 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445445544444444444444444444444444444444444333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.19  E-value=0.026  Score=64.56  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Q 008764           80 SIKKVAKLEAECRRLKAMACRA  101 (554)
Q Consensus        80 ~~~ki~kLEae~q~lr~~~~k~  101 (554)
                      ..+.+..+++.|.+|+.++..+
T Consensus       181 ~~~~~~~~e~~~~~le~lle~~  202 (775)
T PF10174_consen  181 ALRRIREAEARIMRLESLLERK  202 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666666777776544433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=98.17  E-value=0.026  Score=63.70  Aligned_cols=63  Identities=17%  Similarity=0.147  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCCc
Q 008764           42 NSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASST  104 (554)
Q Consensus        42 ~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~k~~~~  104 (554)
                      ...++.+|..+..++..++..++...+=-+.+.+|..|...-+..=-.+.-.||+.+..++..
T Consensus       123 fE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~~~~  185 (717)
T PF09730_consen  123 FEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQHLNI  185 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            334445555555555555555555544444555555554443333333345556655555443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK11637 AmiB activator; Provisional

Probab=98.16  E-value=0.017  Score=62.42  Aligned_cols=79  Identities=20%  Similarity=0.345  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKME  303 (554)
Q Consensus       225 l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le  303 (554)
                      ...+++.++.++..+..++..+..++..+..++..+..++..+...+...+.++..++.++..+..++..++.++....
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~  123 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE  123 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555544444444444444444444444444444444444444444444444444444444333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.15  E-value=0.031  Score=63.91  Aligned_cols=53  Identities=15%  Similarity=0.068  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 008764           48 ELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACR  100 (554)
Q Consensus        48 el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~k  100 (554)
                      ++..+..+.+....++.....+++.+..++.-....++...++..+|.-.+.+
T Consensus       115 q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~  167 (775)
T PF10174_consen  115 QFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQS  167 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33444444444444555555555555555555555555556666666655543

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK11637 AmiB activator; Provisional

Probab=98.11  E-value=0.0092  Score=64.48  Aligned_cols=76  Identities=16%  Similarity=0.246  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          232 MIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKA  307 (554)
Q Consensus       232 l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~ele  307 (554)
                      ++.++..++.++.....++..+..++..+..++..+..++..+...+...+.++..+..++..++.+|..++.++.
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~  120 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA  120 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444444444444444444333333333333333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=98.09  E-value=0.0072  Score=68.57  Aligned_cols=89  Identities=16%  Similarity=0.295  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDK-------MDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIE  300 (554)
Q Consensus       228 ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~-------l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele  300 (554)
                      .+..|+.+++.|+.+|+.....=.+|...+..       +..++..++.+.+.++..+..+....+.-...+..+|+++.
T Consensus       419 a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~  498 (697)
T PF09726_consen  419 AISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA  498 (697)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666655544433444444332       22333333333333333333333333333334444444444


Q ss_pred             HHHHHHHHHHHHHHHH
Q 008764          301 KMEAEKAELEMALAKS  316 (554)
Q Consensus       301 ~le~eleele~el~~l  316 (554)
                      .....+..++.++..-
T Consensus       499 eE~~~R~~lEkQL~eE  514 (697)
T PF09726_consen  499 EERRQRASLEKQLQEE  514 (697)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444444333

; GO: 0016021 integral to membrane

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.06  E-value=0.0059  Score=68.23  Aligned_cols=36  Identities=11%  Similarity=0.241  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          366 TAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMK  401 (554)
Q Consensus       366 ~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~  401 (554)
                      ..++..++..+...+.....+..+...++.++.++.
T Consensus       336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~  371 (562)
T PHA02562        336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ  371 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333344444444333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.03  E-value=0.043  Score=61.51  Aligned_cols=27  Identities=7%  Similarity=0.036  Sum_probs=12.9

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 008764           72 TASKQHLDSIKKVAKLEAECRRLKAMA   98 (554)
Q Consensus        72 ~~~~q~~e~~~ki~kLEae~q~lr~~~   98 (554)
                      .+...+......++..+...+.++.-+
T Consensus       102 ~a~~~~~~~~~~l~~~e~~~~~i~~~l  128 (569)
T PRK04778        102 KAKHEINEIESLLDLIEEDIEQILEEL  128 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444455555555555544433

>PRK03918 chromosome segregation protein; Provisional

Probab=98.01  E-value=0.016  Score=68.45  Aligned_cols=26  Identities=23%  Similarity=0.330  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008764          424 EVAAGKLAECQKTIQSLGKQLKSLAT  449 (554)
Q Consensus       424 ~~a~~kl~e~q~tI~~L~~ql~~L~~  449 (554)
                      .....++..++..+..+...+..+..
T Consensus       401 ~~l~~~i~~l~~~~~~~~~~i~eL~~  426 (880)
T PRK03918        401 EEIEEEISKITARIGELKKEIKELKK  426 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555554444443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.99  E-value=0.063  Score=61.91  Aligned_cols=69  Identities=17%  Similarity=0.287  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          239 LEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKA  307 (554)
Q Consensus       239 Le~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~ele  307 (554)
                      +.+.|+..+......+..|+.....+......+..++.+....+..+.....++.+|+..++.++.+..
T Consensus      1568 V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1568 VVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444445555555555555555555555555555555555555555555555555544433

>PRK03918 chromosome segregation protein; Provisional

Probab=97.97  E-value=0.028  Score=66.41  Aligned_cols=31  Identities=23%  Similarity=0.398  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008764          418 IKQEDLEVAAGKLAECQKTIQSLGKQLKSLA  448 (554)
Q Consensus       418 ~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~  448 (554)
                      .+...+..+..++..+...+..|...+..+.
T Consensus       402 ~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~  432 (880)
T PRK03918        402 EIEEEISKITARIGELKKEIKELKKAIEELK  432 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444666666777777777777776666654

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.95  E-value=0.034  Score=57.38  Aligned_cols=39  Identities=26%  Similarity=0.358  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          358 MEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEE  396 (554)
Q Consensus       358 le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~e  396 (554)
                      ...++..++..+..+..++...+.....++..+..++..
T Consensus       214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~  252 (312)
T PF00038_consen  214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQR  252 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH
Confidence            333444444444444444444444444444444433333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.94  E-value=0.035  Score=57.28  Aligned_cols=32  Identities=25%  Similarity=0.420  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLD  258 (554)
Q Consensus       227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~  258 (554)
                      .++..|+.++..+-.++..++.+...|+.++.
T Consensus         4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~   35 (312)
T PF00038_consen    4 EELQSLNDRLASYIEKVRFLEQENKRLESEIE   35 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            34555555555555555555444444443333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.94  E-value=0.052  Score=59.19  Aligned_cols=21  Identities=24%  Similarity=0.294  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 008764          428 GKLAECQKTIQSLGKQLKSLA  448 (554)
Q Consensus       428 ~kl~e~q~tI~~L~~ql~~L~  448 (554)
                      .+-+++..-|..|+..+..++
T Consensus       438 ~EkQeL~~yi~~Le~r~~~~~  458 (546)
T PF07888_consen  438 EEKQELLEYIERLEQRLDKVA  458 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            344444444555555555544

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.93  E-value=0.0034  Score=57.11  Aligned_cols=11  Identities=45%  Similarity=0.468  Sum_probs=3.9

Q ss_pred             HHHHHHHHHHH
Q 008764          303 EAEKAELEMAL  313 (554)
Q Consensus       303 e~eleele~el  313 (554)
                      +.+++.++..+
T Consensus        48 E~eld~~~~~l   58 (143)
T PF12718_consen   48 EEELDKLEEQL   58 (143)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.91  E-value=0.0083  Score=66.81  Aligned_cols=86  Identities=23%  Similarity=0.306  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          358 MEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTI  437 (554)
Q Consensus       358 le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI  437 (554)
                      ...++..++.++..+..++......+..+...+..+-....+   .....++-++...+++-+++|...-.....+|++|
T Consensus       445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~R---s~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkei  521 (594)
T PF05667_consen  445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNR---SAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEI  521 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555555544444333333333333332221   11223455566666666667777777777777777


Q ss_pred             HHHHHHHHH
Q 008764          438 QSLGKQLKS  446 (554)
Q Consensus       438 ~~L~~ql~~  446 (554)
                      ..+..++..
T Consensus       522 N~l~gkL~R  530 (594)
T PF05667_consen  522 NSLTGKLDR  530 (594)
T ss_pred             HHHHHHHHh
Confidence            777777654

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.89  E-value=0.07  Score=59.58  Aligned_cols=51  Identities=29%  Similarity=0.456  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          226 RAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDA  276 (554)
Q Consensus       226 ~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~  276 (554)
                      ..++..++..+..+...+..+..++..+...+.++..++.........+..
T Consensus       327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~  377 (594)
T PF05667_consen  327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEE  377 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666666666666666665555555555555544444444433

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.89  E-value=0.033  Score=60.66  Aligned_cols=80  Identities=16%  Similarity=0.198  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008764          368 KINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL  447 (554)
Q Consensus       368 ~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L  447 (554)
                      .+..|...+..+......+..++..|+.++..-....+ +.+......+..+.+++..+..+++.+--+--.|..++...
T Consensus       304 ~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e-~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~Y  382 (546)
T KOG0977|consen  304 RISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFE-QALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAY  382 (546)
T ss_pred             cccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHH
Confidence            33333333333333333444444444444443332110 12444555566666666666666666666666666666555


Q ss_pred             h
Q 008764          448 A  448 (554)
Q Consensus       448 ~  448 (554)
                      .
T Consensus       383 R  383 (546)
T KOG0977|consen  383 R  383 (546)
T ss_pred             H
Confidence            4

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.89  E-value=0.14  Score=62.59  Aligned_cols=84  Identities=26%  Similarity=0.281  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHH
Q 008764            5 FESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKV   84 (554)
Q Consensus         5 le~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki   84 (554)
                      ++.++.+|+..+.....+        .-.++..+++++..+..++..+..++.-...++.+....++-+.+-+.-.-+++
T Consensus       634 ~e~~l~qLe~~le~~~~E--------~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~  705 (1822)
T KOG4674|consen  634 KEKRLRQLENELESYKKE--------KRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEV  705 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578888899888866554        334566667777777777777777777666666666666666666666666666


Q ss_pred             HHHHHHHHHHHH
Q 008764           85 AKLEAECRRLKA   96 (554)
Q Consensus        85 ~kLEae~q~lr~   96 (554)
                      ..|+++-+-+..
T Consensus       706 ~tL~er~~~l~~  717 (1822)
T KOG4674|consen  706 ETLEERNKNLQS  717 (1822)
T ss_pred             HHHHHHHHHHHH
Confidence            666666555553

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.88  E-value=0.1  Score=60.35  Aligned_cols=36  Identities=14%  Similarity=0.126  Sum_probs=16.8

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHH
Q 008764           35 LEFLEKENSALKMELLIQSEELEIRAIERDLSNQAA   70 (554)
Q Consensus        35 l~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~   70 (554)
                      ++.+.....+|+.+|+.+...|...+..+.......
T Consensus      1227 i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~ 1262 (1758)
T KOG0994|consen 1227 IAQLASATESLRRQLQALTEDLPQEEETLSDITNSL 1262 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcc
Confidence            333444444555555555555555554444433333

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.87  E-value=0.077  Score=59.88  Aligned_cols=30  Identities=20%  Similarity=0.205  Sum_probs=15.7

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          410 AKSNAEVKIKQEDLEVAAGKLAECQKTIQS  439 (554)
Q Consensus       410 ~~~~~~lk~~qeel~~a~~kl~e~q~tI~~  439 (554)
                      +....-++..+.++..+..-+-+...||-.
T Consensus       500 d~~~g~~kel~~r~~aaqet~yDrdqTI~K  529 (1243)
T KOG0971|consen  500 DMAKGARKELQKRVEAAQETVYDRDQTIKK  529 (1243)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            334344444555555555656666666543

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.87  E-value=0.052  Score=61.16  Aligned_cols=17  Identities=24%  Similarity=0.456  Sum_probs=9.2

Q ss_pred             hHHHHHHHHHHHHHHHH
Q 008764          224 SLRAELEAMIHRTAELE  240 (554)
Q Consensus       224 ~l~~ei~~l~~el~eLe  240 (554)
                      .++..+..|.+++..++
T Consensus       228 eLr~QvrdLtEkLetlR  244 (1243)
T KOG0971|consen  228 ELRAQVRDLTEKLETLR  244 (1243)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            35555666665555443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.86  E-value=0.087  Score=59.08  Aligned_cols=68  Identities=19%  Similarity=0.161  Sum_probs=45.7

Q ss_pred             hhHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 008764           29 PDLFEKLEFLEKENS-----ALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKA   96 (554)
Q Consensus        29 ~~l~~rl~~~eke~~-----~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~   96 (554)
                      ++....+..++..+.     ..+..+..+...+..++..+.........+...+.++-..+..+...-+.+|.
T Consensus        82 ~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk  154 (569)
T PRK04778         82 PDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRK  154 (569)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444433     33456666666677777777777777777778888888888888888888886

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.83  E-value=0.045  Score=55.00  Aligned_cols=13  Identities=31%  Similarity=0.417  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHH
Q 008764          426 AAGKLAECQKTIQ  438 (554)
Q Consensus       426 a~~kl~e~q~tI~  438 (554)
                      +..++.++.+.|.
T Consensus       233 ~~~elre~~k~ik  245 (294)
T COG1340         233 LQNELRELEKKIK  245 (294)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.83  E-value=0.035  Score=63.11  Aligned_cols=26  Identities=35%  Similarity=0.567  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008764          422 DLEVAAGKLAECQKTIQSLGKQLKSL  447 (554)
Q Consensus       422 el~~a~~kl~e~q~tI~~L~~ql~~L  447 (554)
                      +++.+...+..-..+|..|...+..+
T Consensus       630 q~ei~~~~~~~~d~ei~~lk~ki~~~  655 (697)
T PF09726_consen  630 QLEIAQGQLRKKDKEIEELKAKIAQL  655 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555566666555444

; GO: 0016021 integral to membrane

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.77  E-value=0.035  Score=52.10  Aligned_cols=106  Identities=17%  Similarity=0.185  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008764          292 KAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINS  371 (554)
Q Consensus       292 l~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~  371 (554)
                      ...|-.....++.+...+...+..++++...+......+.....++..+...++..+-.++.-+......+.+-...++.
T Consensus        83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e  162 (193)
T PF14662_consen   83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE  162 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            33333333333444444444444444444443334444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          372 LEEEVEMERALSMQITVKCQKLEEEQ  397 (554)
Q Consensus       372 Le~el~~~~~~~~e~e~kl~eLe~el  397 (554)
                      |..-+...+....++..++..|++.+
T Consensus       163 L~~~ieEy~~~teeLR~e~s~LEeql  188 (193)
T PF14662_consen  163 LKKTIEEYRSITEELRLEKSRLEEQL  188 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.76  E-value=0.11  Score=57.45  Aligned_cols=104  Identities=20%  Similarity=0.267  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          299 IEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEM  378 (554)
Q Consensus       299 le~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~  378 (554)
                      +..+..+++.....+.....++..+...+..|..++...+..+..+..........+..+..++..++.++..+...-.+
T Consensus       283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~  362 (522)
T PF05701_consen  283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEK  362 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence            33344444444444444444444444444445555555555555554444444455555555555555555554444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          379 ERALSMQITVKCQKLEEEQWRMKQ  402 (554)
Q Consensus       379 ~~~~~~e~e~kl~eLe~el~~~~~  402 (554)
                      .+....++...+..+..+....+.
T Consensus       363 ~k~~~~~l~~~Lqql~~Eae~Ak~  386 (522)
T PF05701_consen  363 AKEAMSELPKALQQLSSEAEEAKK  386 (522)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555555555554

Several sequences in this family are described as being myosin heavy chain-like.

>PRK01156 chromosome segregation protein; Provisional

Probab=97.75  E-value=0.15  Score=60.50  Aligned_cols=29  Identities=21%  Similarity=0.334  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 008764          422 DLEVAAGKLAECQKTIQSLGKQLKSLATL  450 (554)
Q Consensus       422 el~~a~~kl~e~q~tI~~L~~ql~~L~~~  450 (554)
                      .+..+..++..+...|..+...+..+...
T Consensus       417 ~~~~l~~~i~~l~~~i~~l~~~~~el~~~  445 (895)
T PRK01156        417 KLQDISSKVSSLNQRIRALRENLDELSRN  445 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555555555555444433

>PRK09039 hypothetical protein; Validated

Probab=97.71  E-value=0.016  Score=60.63  Aligned_cols=17  Identities=12%  Similarity=0.173  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 008764          227 AELEAMIHRTAELEQKL  243 (554)
Q Consensus       227 ~ei~~l~~el~eLe~~l  243 (554)
                      .+|.....++..++.++
T Consensus        46 ~~i~~~~~eL~~L~~qI   62 (343)
T PRK09039         46 REISGKDSALDRLNSQI   62 (343)
T ss_pred             HHHhhHHHHHHHHHHHH
Confidence            44444444444444433

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.69  E-value=0.03  Score=54.93  Aligned_cols=54  Identities=13%  Similarity=0.326  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          327 LREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMER  380 (554)
Q Consensus       327 i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~  380 (554)
                      +..|..++..++..+..+..++..+...+..++.++..+..++..++..+...+
T Consensus        91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~  144 (239)
T COG1579          91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE  144 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444445445444444444443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.68  E-value=0.082  Score=64.98  Aligned_cols=45  Identities=13%  Similarity=0.241  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKL  271 (554)
Q Consensus       227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~i  271 (554)
                      +++.....+..+...++...+..+..+...+..+...+..|+.+.
T Consensus       286 EEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQa  330 (1486)
T PRK04863        286 EEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDY  330 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444443333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.68  E-value=0.032  Score=54.77  Aligned_cols=49  Identities=20%  Similarity=0.350  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          333 QLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERA  381 (554)
Q Consensus       333 ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~  381 (554)
                      ++..|..++..++.....++..+..+..++..+...+..+...+...+.
T Consensus        90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~  138 (239)
T COG1579          90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK  138 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444443333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.62  E-value=0.18  Score=55.92  Aligned_cols=49  Identities=18%  Similarity=0.069  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhh
Q 008764           31 LFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLD   79 (554)
Q Consensus        31 l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e   79 (554)
                      ....+..+++++..++.++......-.....+++...+.++.+..+...
T Consensus        32 ~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~   80 (522)
T PF05701_consen   32 KETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEK   80 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555666666666666666665556666666666666666555443

Several sequences in this family are described as being myosin heavy chain-like.

>PRK09039 hypothetical protein; Validated

Probab=97.61  E-value=0.0099  Score=62.14  Aligned_cols=11  Identities=27%  Similarity=0.516  Sum_probs=7.7

Q ss_pred             ccccccccccc
Q 008764          536 RNGFAKFFSRT  546 (554)
Q Consensus       536 ~~~~~~~~~~~  546 (554)
                      ..|||.+.|-.
T Consensus       312 ~~G~G~~~Pi~  322 (343)
T PRK09039        312 AAGFGEFQPLD  322 (343)
T ss_pred             EEEeCCcCcCC
Confidence            47888877753

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.61  E-value=0.23  Score=56.94  Aligned_cols=51  Identities=27%  Similarity=0.451  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          224 SLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQM  274 (554)
Q Consensus       224 ~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l  274 (554)
                      -+..+++.++..+..|+.+++.--..+..++.+++.+..++..+...+.++
T Consensus       174 hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~  224 (1195)
T KOG4643|consen  174 HLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEF  224 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666666666666666666555555556666666666655555555554

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.58  E-value=0.18  Score=54.75  Aligned_cols=16  Identities=19%  Similarity=0.167  Sum_probs=11.4

Q ss_pred             hhhHHHhhhhhhhhcc
Q 008764          154 SDSWASALIAELDQFK  169 (554)
Q Consensus       154 ~~~~a~~li~~~~~~~  169 (554)
                      ...|-++||.+..+..
T Consensus       163 mlhWlvdlI~~~t~~v  178 (581)
T KOG0995|consen  163 MLHWLVDLIRINTALV  178 (581)
T ss_pred             HHHHHHHHHHHhHHHh
Confidence            4588888888765544

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.56  E-value=0.43  Score=58.73  Aligned_cols=44  Identities=23%  Similarity=0.194  Sum_probs=25.7

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q 008764          410 AKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDF  453 (554)
Q Consensus       410 ~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~  453 (554)
                      ......+......+..+...++.....+.+|.+.++...+...+
T Consensus       847 ~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~  890 (1822)
T KOG4674|consen  847 DELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLN  890 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence            33444444445566666666666666677777777666544333

>PRK01156 chromosome segregation protein; Provisional

Probab=97.55  E-value=0.34  Score=57.42  Aligned_cols=9  Identities=33%  Similarity=0.482  Sum_probs=3.5

Q ss_pred             HHHHHHHHH
Q 008764           82 KKVAKLEAE   90 (554)
Q Consensus        82 ~ki~kLEae   90 (554)
                      .++..|..+
T Consensus       423 ~~i~~l~~~  431 (895)
T PRK01156        423 SKVSSLNQR  431 (895)
T ss_pred             HHHHHHHHH
Confidence            333333333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.55  E-value=0.074  Score=65.36  Aligned_cols=30  Identities=23%  Similarity=0.204  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          245 RMDAEKVDLEEKLDKMDAEKAELEEKLEQM  274 (554)
Q Consensus       245 ~le~ei~eLe~~l~~l~~e~~~l~~~ie~l  274 (554)
                      .....+...+..+.++...+.++..++..+
T Consensus       297 eA~kkLe~tE~nL~rI~diL~ELe~rL~kL  326 (1486)
T PRK04863        297 TSRRQLAAEQYRLVEMARELAELNEAESDL  326 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.46  E-value=0.21  Score=52.75  Aligned_cols=7  Identities=14%  Similarity=0.396  Sum_probs=3.1

Q ss_pred             ccccccc
Q 008764          536 RNGFAKF  542 (554)
Q Consensus       536 ~~~~~~~  542 (554)
                      -+|+|.+
T Consensus       348 l~GYG~v  354 (420)
T COG4942         348 LRGYGLV  354 (420)
T ss_pred             hccCceE
Confidence            3444443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.21  Score=55.63  Aligned_cols=58  Identities=17%  Similarity=0.274  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008764          315 KSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSL  372 (554)
Q Consensus       315 ~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~L  372 (554)
                      .++.+++.+..++..|...+.+.+-.+......+..+..+......++..++.+|..+
T Consensus       441 ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~  498 (1118)
T KOG1029|consen  441 QLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKEL  498 (1118)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444444433333333333333333333333333333333333333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.32  E-value=0.45  Score=53.51  Aligned_cols=19  Identities=21%  Similarity=0.342  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 008764          384 MQITVKCQKLEEEQWRMKQ  402 (554)
Q Consensus       384 ~e~e~kl~eLe~el~~~~~  402 (554)
                      .++..++.+++..+..++.
T Consensus       198 keL~~kl~~l~~~l~~~~e  216 (617)
T PF15070_consen  198 KELQKKLGELQEKLHNLKE  216 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444455555554444443

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=97.31  E-value=0.15  Score=47.87  Aligned_cols=8  Identities=38%  Similarity=0.272  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 008764          233 IHRTAELE  240 (554)
Q Consensus       233 ~~el~eLe  240 (554)
                      +.++..++
T Consensus        10 nrri~~le   17 (205)
T KOG1003|consen   10 NRRIQLLE   17 (205)
T ss_pred             HHHHHHHH
Confidence            33333333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=97.28  E-value=0.37  Score=59.47  Aligned_cols=38  Identities=16%  Similarity=0.229  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          226 RAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAE  263 (554)
Q Consensus       226 ~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e  263 (554)
                      ...|.++..++.++...+..+..++..+...+..+..+
T Consensus       741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e  778 (1353)
T TIGR02680       741 LRRIAELDARLAAVDDELAELARELRALGARQRALADE  778 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777777777777777776666666554

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.28  E-value=0.5  Score=53.13  Aligned_cols=57  Identities=26%  Similarity=0.367  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAEL  281 (554)
Q Consensus       225 l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~  281 (554)
                      +..+++.|..++..+..++.....+...|..........+.+++..+..+.....+.
T Consensus        85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~  141 (617)
T PF15070_consen   85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDR  141 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666666666666666655443333333333333444444444444444443333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=97.27  E-value=0.26  Score=50.09  Aligned_cols=100  Identities=18%  Similarity=0.238  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 008764          337 LQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEV  416 (554)
Q Consensus       337 l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~l  416 (554)
                      +-.++..++..+..+...|.....+....+.+|..|..++-+.......+...-.++...+...+.            .-
T Consensus       204 cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske------------~Q  271 (306)
T PF04849_consen  204 CVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKE------------SQ  271 (306)
T ss_pred             HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH------------HH
Confidence            334444444444444444444444444444455555444444443333333333344443333322            22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008764          417 KIKQEDLEVAAGKLAECQKTIQSLGKQLKSLA  448 (554)
Q Consensus       417 k~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~  448 (554)
                      ..++.++..+..+.++|.......+.+++.+.
T Consensus       272 ~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR  303 (306)
T PF04849_consen  272 RQLQAELQELQDKYAECMAMLHEAQEELKTLR  303 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            23445777788888888888888888887765

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.26  E-value=0.89  Score=55.65  Aligned_cols=50  Identities=22%  Similarity=0.227  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 008764           46 KMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLK   95 (554)
Q Consensus        46 ~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr   95 (554)
                      ..++..+...+.....+..........+..++.+...+.++.+.+.+.++
T Consensus       468 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~  517 (1201)
T PF12128_consen  468 KEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQAR  517 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555544555555555555555555555555444444444443

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=97.25  E-value=0.57  Score=53.23  Aligned_cols=8  Identities=13%  Similarity=0.476  Sum_probs=3.6

Q ss_pred             ceeeecCC
Q 008764          196 QLAAMPNN  203 (554)
Q Consensus       196 rlvtl~~t  203 (554)
                      ++|-+|..
T Consensus       276 pvv~i~~E  283 (980)
T KOG0980|consen  276 PVVYIPSE  283 (980)
T ss_pred             CceecCCC
Confidence            34455443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.23  E-value=0.19  Score=47.34  Aligned_cols=62  Identities=24%  Similarity=0.303  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          332 MQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKL  393 (554)
Q Consensus       332 ~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eL  393 (554)
                      .++++++.-+..+++....+-.+...++.+...+..++..|+.+-.+.......+..+..+|
T Consensus        67 eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL  128 (193)
T PF14662_consen   67 EELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL  128 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence            33334444444444433333333333334444444444444433333333333333333333

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=97.21  E-value=0.62  Score=52.92  Aligned_cols=34  Identities=12%  Similarity=-0.018  Sum_probs=15.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          410 AKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQ  443 (554)
Q Consensus       410 ~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~q  443 (554)
                      ..+...++.+....+.+..+..+.+..+.+++.-
T Consensus       529 ~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~s  562 (980)
T KOG0980|consen  529 AQLEDLLKQKDRLAAELVAREEEREALRLEAERS  562 (980)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3344444444444455555554444444444433

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.20  E-value=0.59  Score=52.40  Aligned_cols=12  Identities=25%  Similarity=0.232  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHh
Q 008764          436 TIQSLGKQLKSL  447 (554)
Q Consensus       436 tI~~L~~ql~~L  447 (554)
                      +--.+...+..+
T Consensus       509 thldyR~els~l  520 (1265)
T KOG0976|consen  509 THLDYRSELSEL  520 (1265)
T ss_pred             HHHHHHHHHHHH
Confidence            333444444444

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.19  E-value=0.6  Score=52.27  Aligned_cols=50  Identities=10%  Similarity=0.094  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 008764           47 MELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKA   96 (554)
Q Consensus        47 ~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~   96 (554)
                      ..+..+.+.+..++.++......++.+.....++-..+..|...-+.+|.
T Consensus       101 ~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk  150 (560)
T PF06160_consen  101 QAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRK  150 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555666666666667777777788888777775

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.67  Score=52.12  Aligned_cols=66  Identities=15%  Similarity=0.077  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 008764           30 DLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLK   95 (554)
Q Consensus        30 ~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr   95 (554)
                      .+...-..+..++..|+..+..+..........+....+.+.+...+-.+...++..+-++...++
T Consensus        45 ~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~  110 (698)
T KOG0978|consen   45 ALTVLFDELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIR  110 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHH
Confidence            466666677777777777777777777777777777777777777777777777776666644444

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=97.10  E-value=0.29  Score=46.91  Aligned_cols=28  Identities=25%  Similarity=0.455  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          227 AELEAMIHRTAELEQKLERMDAEKVDLE  254 (554)
Q Consensus       227 ~ei~~l~~el~eLe~~l~~le~ei~eLe  254 (554)
                      ..|..+...+.++...+..+..+...|+
T Consensus        12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk   39 (194)
T PF15619_consen   12 HKIKELQNELAELQRKLQELRKENKTLK   39 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666666666666666655554443

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.6  Score=50.30  Aligned_cols=18  Identities=22%  Similarity=0.375  Sum_probs=10.2

Q ss_pred             hhHHHHHHHHHHHHHHHH
Q 008764          223 SSLRAELEAMIHRTAELE  240 (554)
Q Consensus       223 ~~l~~ei~~l~~el~eLe  240 (554)
                      .+++.+|+.+..++.+..
T Consensus        11 e~lr~eierLT~el~q~t   28 (772)
T KOG0999|consen   11 EKLRQEIERLTEELEQTT   28 (772)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            345566666666665543

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=97.06  E-value=0.22  Score=44.90  Aligned_cols=88  Identities=20%  Similarity=0.307  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008764          278 KAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSS  357 (554)
Q Consensus       278 l~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~  357 (554)
                      +...+.....+.+++..++++++..+..+..+..+.......+..++.++..+...+..+..++..+...+..+...+..
T Consensus        12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~   91 (140)
T PF10473_consen   12 LKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQK   91 (140)
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444455555555555555555555555555555555555555555555555555555555444444444444


Q ss_pred             HHHHHHHH
Q 008764          358 MEMEAQTM  365 (554)
Q Consensus       358 le~ei~~l  365 (554)
                      ++..+..|
T Consensus        92 ~q~kv~eL   99 (140)
T PF10473_consen   92 KQEKVSEL   99 (140)
T ss_pred             HHHHHHHH
Confidence            44444333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=96.96  E-value=0.54  Score=47.71  Aligned_cols=63  Identities=24%  Similarity=0.325  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008764          294 KLEEKIEKMEAEKAELEMALAKSQDS-VEASELQLREATMQLEELQRELNLVNESKRIVESNVS  356 (554)
Q Consensus       294 ~Le~ele~le~eleele~el~~l~~e-l~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~  356 (554)
                      .|.+++.++..++.+++..+..-+.- +..+...|..++.+....+..+..+...+..+++.|.
T Consensus       110 ~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE  173 (310)
T PF09755_consen  110 DLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLE  173 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Confidence            34444444444444444444432211 2333344444444444444444444444444444433

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.94  E-value=1  Score=50.49  Aligned_cols=89  Identities=18%  Similarity=0.305  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 008764          355 VSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQ  434 (554)
Q Consensus       355 L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q  434 (554)
                      ...+..++..+...+..+...+.......+.+...+.++...+..+..+.     ......+..+..+-..|..++...+
T Consensus       346 ~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q-----~~~~~~l~~L~~dE~~Ar~~l~~~~  420 (560)
T PF06160_consen  346 VRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQ-----EEINESLQSLRKDEKEAREKLQKLK  420 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666666666666666666677777777777777766532     3345555556555566777777777


Q ss_pred             HHHHHHHHHHHHhh
Q 008764          435 KTIQSLGKQLKSLA  448 (554)
Q Consensus       435 ~tI~~L~~ql~~L~  448 (554)
                      ..+....+.+....
T Consensus       421 ~~l~~ikR~lek~n  434 (560)
T PF06160_consen  421 QKLREIKRRLEKSN  434 (560)
T ss_pred             HHHHHHHHHHHHcC
Confidence            77777777776553

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.91  E-value=0.94  Score=52.64  Aligned_cols=10  Identities=10%  Similarity=0.162  Sum_probs=4.6

Q ss_pred             chhhhhcccC
Q 008764          449 TLEDFLIDTA  458 (554)
Q Consensus       449 ~~~~~~~~~~  458 (554)
                      .+..+|+.+.
T Consensus       496 ~lKr~fPgv~  505 (1141)
T KOG0018|consen  496 ALKRLFPGVY  505 (1141)
T ss_pred             HHHHhCCCcc
Confidence            3444554443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.88  E-value=1.2  Score=50.58  Aligned_cols=56  Identities=30%  Similarity=0.405  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008764          389 KCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLAT  449 (554)
Q Consensus       389 kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~  449 (554)
                      .+.+|+.++..+..+     ...+...+...|..+..+.+.+..-+.+|..|..++.++..
T Consensus       266 EiqKL~qQL~qve~E-----K~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~  321 (717)
T PF09730_consen  266 EIQKLKQQLLQVERE-----KSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK  321 (717)
T ss_pred             HHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            456666666666553     25567778888888999999999999999999999999886

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.86  E-value=0.74  Score=47.87  Aligned_cols=67  Identities=24%  Similarity=0.171  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          281 LEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNES  347 (554)
Q Consensus       281 ~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~  347 (554)
                      ++.....+..+.+.++.-...+...+..+..+...+...+..+..-+..+......+..++..++..
T Consensus       133 l~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~  199 (325)
T PF08317_consen  133 LEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQL  199 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444455555554444455555555555555555444444444444444455555555544443

>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]

Probab=96.82  E-value=0.67  Score=46.73  Aligned_cols=90  Identities=19%  Similarity=0.212  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          363 QTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQ--QIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSL  440 (554)
Q Consensus       363 ~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~--~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L  440 (554)
                      .-+..+++.++..+.+-......+...+..+...+..+.++.-.|  .++..+..+-.+.++-.....+++..+..|..|
T Consensus       225 ~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~L  304 (391)
T KOG1850|consen  225 ALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRL  304 (391)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            334444444444444433333333333333333333333322222  234444444444444445566777788888888


Q ss_pred             HHHHHHhhchhh
Q 008764          441 GKQLKSLATLED  452 (554)
Q Consensus       441 ~~ql~~L~~~~~  452 (554)
                      ++-+..|++...
T Consensus       305 ekLcRALq~ern  316 (391)
T KOG1850|consen  305 EKLCRALQTERN  316 (391)
T ss_pred             HHHHHHHHhccc
Confidence            888888875443

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.82  E-value=1.5  Score=50.79  Aligned_cols=24  Identities=8%  Similarity=-0.069  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHhhchh-hhhcccCCc
Q 008764          437 IQSLGKQLKSLATLE-DFLIDTASI  460 (554)
Q Consensus       437 I~~L~~ql~~L~~~~-~~~~~~~~~  460 (554)
                      ....-..+.|++... .|-.+...|
T Consensus       429 ~~d~~dAy~wlrenr~~FK~~vyeP  453 (1072)
T KOG0979|consen  429 SSDAYDAYQWLRENRSEFKDEVYEP  453 (1072)
T ss_pred             chHHHHHHHHHHHCHHHhcccccCC
Confidence            344445566666655 444444444

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=1.4  Score=49.65  Aligned_cols=27  Identities=22%  Similarity=0.373  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008764          422 DLEVAAGKLAECQKTIQSLGKQLKSLA  448 (554)
Q Consensus       422 el~~a~~kl~e~q~tI~~L~~ql~~L~  448 (554)
                      ++.....+...+++.+..|...+..+.
T Consensus       595 ele~~~~k~~rleEE~e~L~~kle~~k  621 (698)
T KOG0978|consen  595 ELEIEKFKRKRLEEELERLKRKLERLK  621 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344444444455555555555554443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.73  E-value=1.2  Score=48.51  Aligned_cols=20  Identities=25%  Similarity=0.313  Sum_probs=11.4

Q ss_pred             ccccccc--chhhhhhHH--HHHH
Q 008764          117 AESLVDS--QSDSWERLN--AVEM  136 (554)
Q Consensus       117 ~~~~~~~--~~~~g~rl~--~ve~  136 (554)
                      |+||.|.  ++..+..+|  .||.
T Consensus        63 pRpl~dk~~~s~c~~~I~~fL~en   86 (581)
T KOG0995|consen   63 PRPLSDKRYRSQCIRQIYNFLVEN   86 (581)
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHc
Confidence            5566554  555566664  4665

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.73  E-value=0.59  Score=44.80  Aligned_cols=17  Identities=29%  Similarity=0.436  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 008764          428 GKLAECQKTIQSLGKQL  444 (554)
Q Consensus       428 ~kl~e~q~tI~~L~~ql  444 (554)
                      ..+...+..|..|...+
T Consensus       171 ~~~~~l~~ei~~L~~kl  187 (194)
T PF15619_consen  171 EEVKSLQEEIQRLNQKL  187 (194)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.71  E-value=0.94  Score=46.86  Aligned_cols=92  Identities=17%  Similarity=0.306  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          229 LEAMIHRTAELEQKLERMDAEKVDL-------EEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEK  301 (554)
Q Consensus       229 i~~l~~el~eLe~~l~~le~ei~eL-------e~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~  301 (554)
                      ++.+...+..+..++.....+....       ..+++....+..............+.....++..+...-..+...+..
T Consensus        76 lddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~  155 (499)
T COG4372          76 LDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKT  155 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444333       334444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 008764          302 MEAEKAELEMALAKSQDSV  320 (554)
Q Consensus       302 le~eleele~el~~l~~el  320 (554)
                      +-.+...++.+...+...-
T Consensus       156 l~~qr~ql~aq~qsl~a~~  174 (499)
T COG4372         156 LAEQRRQLEAQAQSLQASQ  174 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444333

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=96.69  E-value=1.4  Score=48.72  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          227 AELEAMIHRTAELEQKLERMDAEK  250 (554)
Q Consensus       227 ~ei~~l~~el~eLe~~l~~le~ei  250 (554)
                      -++..+.+++..|.+.|+.-++++
T Consensus       346 ~eLdK~~~~i~~Ln~~leaReaql  369 (961)
T KOG4673|consen  346 LELDKTKKEIKMLNNALEAREAQL  369 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555433333

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.67  E-value=1.1  Score=48.00  Aligned_cols=19  Identities=21%  Similarity=0.345  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 008764          227 AELEAMIHRTAELEQKLER  245 (554)
Q Consensus       227 ~ei~~l~~el~eLe~~l~~  245 (554)
                      .++..++.++..+...+..
T Consensus        81 ~~l~~l~~~~~~l~a~~~~   99 (423)
T TIGR01843        81 ADAAELESQVLRLEAEVAR   99 (423)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            4445555555544444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.67  E-value=1.4  Score=49.84  Aligned_cols=55  Identities=16%  Similarity=0.392  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          251 VDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAE  305 (554)
Q Consensus       251 ~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~e  305 (554)
                      ..++..+..+..++..+.+....++.+.++++.+++.......++.+++.-++.+
T Consensus       660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~q  714 (970)
T KOG0946|consen  660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQ  714 (970)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444455555555555555555555555544444444444444444333

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=96.64  E-value=0.91  Score=46.61  Aligned_cols=52  Identities=13%  Similarity=0.114  Sum_probs=32.7

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          350 IVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMK  401 (554)
Q Consensus       350 ~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~  401 (554)
                      .+=.+++.+...+..++..+..+-.+.++.....+.+..++..|..++.-+-
T Consensus       130 ~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L  181 (319)
T PF09789_consen  130 DLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYIL  181 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445555566666666666666666666666666677777777766665443

>PRK11281 hypothetical protein; Provisional

Probab=96.62  E-value=2.6  Score=50.74  Aligned_cols=37  Identities=8%  Similarity=0.097  Sum_probs=24.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008764          412 SNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLA  448 (554)
Q Consensus       412 ~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~  448 (554)
                      ....+.....+...+...++....+..++..|+.++.
T Consensus       297 ~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~  333 (1113)
T PRK11281        297 ATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLK  333 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3334444444556667777777788888888887775

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=96.61  E-value=0.93  Score=45.58  Aligned_cols=82  Identities=20%  Similarity=0.210  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          321 EASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRM  400 (554)
Q Consensus       321 ~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~  400 (554)
                      .-+-.++...+.++..++.++......+.+-.--++.++.++...+.++..++.-...+......+..+..-+++.+..+
T Consensus       147 e~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~Ql  226 (305)
T PF14915_consen  147 EILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQL  226 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444555555555544444444444445555555555555555555555555555555555555555555554


Q ss_pred             HH
Q 008764          401 KQ  402 (554)
Q Consensus       401 ~~  402 (554)
                      ..
T Consensus       227 qs  228 (305)
T PF14915_consen  227 QS  228 (305)
T ss_pred             HH
Confidence            43

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.60  E-value=1  Score=45.87  Aligned_cols=58  Identities=24%  Similarity=0.266  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          325 LQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERAL  382 (554)
Q Consensus       325 ~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~  382 (554)
                      .++.....++..+..+|..-.......+..+..+..++..++.++..+-.+-+.....
T Consensus       206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~  263 (306)
T PF04849_consen  206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQH  263 (306)
T ss_pred             HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3444444555555555554444444444444444455544544444444444443333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=96.56  E-value=1.9  Score=48.56  Aligned_cols=148  Identities=15%  Similarity=0.171  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 008764          302 MEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEME--  379 (554)
Q Consensus       302 le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~--  379 (554)
                      +..++..+.-.+......++.+...+.+|+++.+.+......++..+...+..+..+.......+.+++.+.+.+-..  
T Consensus       328 ltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~  407 (1265)
T KOG0976|consen  328 LTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQ  407 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            344444444444444444455555666666666666666666666666666666666666777777777777766544  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 008764          380 -RALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQE-DLEVAAGKLAECQKTIQSLGKQLKSLATLE  451 (554)
Q Consensus       380 -~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qe-el~~a~~kl~e~q~tI~~L~~ql~~L~~~~  451 (554)
                       +..+..+...+.+..+.+..+...+-.  .+.....++.+.+ .--.....+..|.+-|.-+.....+++...
T Consensus       408 ~~~dhe~~kneL~~a~ekld~mgthl~m--ad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qr  479 (1265)
T KOG0976|consen  408 GKKDHEAAKNELQEALEKLDLMGTHLSM--ADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQR  479 (1265)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhHHHHH--HHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhc
Confidence             334455555555555555555442100  0111112222222 113334567778888877777777776543

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.49  E-value=2.5  Score=48.98  Aligned_cols=17  Identities=29%  Similarity=0.411  Sum_probs=9.2

Q ss_pred             hHHHHHHHHHHHHHHHH
Q 008764           79 DSIKKVAKLEAECRRLK   95 (554)
Q Consensus        79 e~~~ki~kLEae~q~lr   95 (554)
                      +....++.++++|.+||
T Consensus       202 ~lr~eLddleae~~klr  218 (1195)
T KOG4643|consen  202 RLRNELDDLEAEISKLR  218 (1195)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344555666666665

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.48  E-value=2.5  Score=49.01  Aligned_cols=12  Identities=33%  Similarity=0.642  Sum_probs=7.1

Q ss_pred             Cccccccccccc
Q 008764          532 PEKNRNGFAKFF  543 (554)
Q Consensus       532 ~~~~~~~~~~~~  543 (554)
                      ++-.+-||--+|
T Consensus       525 e~l~~lGF~gyl  536 (1072)
T KOG0979|consen  525 EELKRLGFEGYL  536 (1072)
T ss_pred             HHHHhcChHHHh
Confidence            455667776544

>TIGR00634 recN DNA repair protein RecN

Probab=96.47  E-value=1.3  Score=49.76  Aligned_cols=38  Identities=21%  Similarity=0.230  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          238 ELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMD  275 (554)
Q Consensus       238 eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~  275 (554)
                      .+...+..+..++..+.........+++.++.++++++
T Consensus       165 ~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe  202 (563)
T TIGR00634       165 ELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE  202 (563)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=96.45  E-value=0.93  Score=43.71  Aligned_cols=133  Identities=23%  Similarity=0.349  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          264 KAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNL  343 (554)
Q Consensus       264 ~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~  343 (554)
                      |..++.++..+.......+..+..+..+...+..-+..+..++.++...+.....    .+..+..+...+..++.++..
T Consensus        29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k----dK~~L~~~k~rl~~~ek~l~~  104 (201)
T PF13851_consen   29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK----DKQSLQNLKARLKELEKELKD  104 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444433333333333333333344444444444444444444433321    112233334444444444444


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 008764          344 VNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALS-MQITVKCQKLEEEQWRM  400 (554)
Q Consensus       344 l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~-~e~e~kl~eLe~el~~~  400 (554)
                      +.-....++.++..++.+...+..+....-.++...-... --++.++..+...++..
T Consensus       105 Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~k  162 (201)
T PF13851_consen  105 LKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKK  162 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555555555555555444443333321111 12344444444444443

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=96.45  E-value=0.94  Score=43.73  Aligned_cols=45  Identities=16%  Similarity=0.214  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          296 EEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRE  340 (554)
Q Consensus       296 e~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~e  340 (554)
                      ...+..+..+.+.+...+..++..+..+......+...+..++..
T Consensus        68 ~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~N  112 (207)
T PF05010_consen   68 EAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKN  112 (207)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            333444444444444444444444444444444444444444333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=96.43  E-value=1.4  Score=45.49  Aligned_cols=160  Identities=20%  Similarity=0.202  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008764          279 AELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSM  358 (554)
Q Consensus       279 ~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~l  358 (554)
                      ..++..-..+..+.+.++.-...+...++.+......+...+.....-+..+......++.++..+......++.-   =
T Consensus       126 aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~---d  202 (312)
T smart00787      126 ARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDC---D  202 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhC---C
Confidence            3344444445555555555555555555555555555554444444444445555555555555444433332210   0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----
Q 008764          359 EMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQ----  434 (554)
Q Consensus       359 e~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q----  434 (554)
                      ..++..++.++.....++...+....+...++..+...++....            .......+|+.+...+..|.    
T Consensus       203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~------------~k~e~~~~I~~ae~~~~~~r~~t~  270 (312)
T smart00787      203 PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTN------------KKSELNTEIAEAEKKLEQCRGFTF  270 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhcCCCCH
Confidence            11223333333333333333333333333333333333333222            22333345555666555554    


Q ss_pred             HHHHHHHHHHHHhhchhhh
Q 008764          435 KTIQSLGKQLKSLATLEDF  453 (554)
Q Consensus       435 ~tI~~L~~ql~~L~~~~~~  453 (554)
                      ..|..|..++..++.+..+
T Consensus       271 ~Ei~~Lk~~~~~Le~l~g~  289 (312)
T smart00787      271 KEIEKLKEQLKLLQSLTGW  289 (312)
T ss_pred             HHHHHHHHHHHHHHHHhCC
Confidence            3566677776666655543

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=96.37  E-value=0.88  Score=44.99  Aligned_cols=68  Identities=15%  Similarity=0.181  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          277 EKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLV  344 (554)
Q Consensus       277 el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l  344 (554)
                      ++..+..+...+......+++.-+++..++.--+..+.-++-++...+.+|..++.++..++.+++..
T Consensus        61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs  128 (307)
T PF10481_consen   61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS  128 (307)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333444444444444444444433

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.35  E-value=1.8  Score=46.21  Aligned_cols=19  Identities=37%  Similarity=0.478  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 008764          232 MIHRTAELEQKLERMDAEK  250 (554)
Q Consensus       232 l~~el~eLe~~l~~le~ei  250 (554)
                      +..++..++.++..+..++
T Consensus        79 ~~~~l~~l~~~~~~l~a~~   97 (423)
T TIGR01843        79 VEADAAELESQVLRLEAEV   97 (423)
T ss_pred             hhhHHHHHHHHHHHHHHHH
Confidence            3444444444444444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.26  E-value=2.3  Score=46.10  Aligned_cols=25  Identities=28%  Similarity=0.437  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          226 RAELEAMIHRTAELEQKLERMDAEK  250 (554)
Q Consensus       226 ~~ei~~l~~el~eLe~~l~~le~ei  250 (554)
                      ..+++.++.++..|..++.+...++
T Consensus         7 eq~ve~lr~eierLT~el~q~t~e~   31 (772)
T KOG0999|consen    7 EQEVEKLRQEIERLTEELEQTTEEK   31 (772)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466677777777777777664444

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=96.19  E-value=1.9  Score=50.12  Aligned_cols=28  Identities=11%  Similarity=0.166  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          249 EKVDLEEKLDKMDAEKAELEEKLEQMDA  276 (554)
Q Consensus       249 ei~eLe~~l~~l~~e~~~l~~~ie~l~~  276 (554)
                      ...-+..++..+..++...+.++..+..
T Consensus       195 a~~~L~~ql~~l~~~l~~aE~~l~~fk~  222 (754)
T TIGR01005       195 AADFLAPEIADLSKQSRDAEAEVAAYRA  222 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555555544444443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.18  E-value=2  Score=44.72  Aligned_cols=21  Identities=19%  Similarity=0.248  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 008764          230 EAMIHRTAELEQKLERMDAEK  250 (554)
Q Consensus       230 ~~l~~el~eLe~~l~~le~ei  250 (554)
                      .+|...+.+-+..+..++.++
T Consensus        78 ~EL~~~I~egr~~~~~~E~~~   98 (325)
T PF08317_consen   78 RELKKYISEGRQIFEEIEEET   98 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.14  E-value=2.9  Score=46.16  Aligned_cols=56  Identities=21%  Similarity=0.298  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          324 ELQLREATMQLEELQRELNLVNESKR--------IVESNVSSMEMEAQTMTAKINSLEEEVEME  379 (554)
Q Consensus       324 e~~i~ele~ele~l~~el~~l~~~~~--------~le~~L~~le~ei~~l~~~i~~Le~el~~~  379 (554)
                      +..+..++.+++.++.++...+....        .....+.....++..|...+..++.-+..+
T Consensus       248 q~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e  311 (629)
T KOG0963|consen  248 QQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEE  311 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444443221        222333334445555555555554444333

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.12  E-value=0.0014  Score=76.44  Aligned_cols=18  Identities=22%  Similarity=0.329  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhcCC
Q 008764            5 FESRLLELQSKAETAKSE   22 (554)
Q Consensus         5 le~~~~~~~~~~~~~~~~   22 (554)
                      |++...+|..+|-....+
T Consensus         2 ~~~~~~~l~~~l~kke~E   19 (859)
T PF01576_consen    2 LERQKEELEEQLKKKEEE   19 (859)
T ss_dssp             ------------------
T ss_pred             chhHHHHHHHHHHhhHHH
Confidence            344445555555444444

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.08  E-value=2.2  Score=44.30  Aligned_cols=57  Identities=18%  Similarity=0.146  Sum_probs=30.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          346 ESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQ  402 (554)
Q Consensus       346 ~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~  402 (554)
                      +++............++......|++...++........+-+.++..++.+...+..
T Consensus       217 ~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leq  273 (499)
T COG4372         217 EELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQ  273 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444555555555555555555554444455555566666666666555

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=96.08  E-value=4.9  Score=48.33  Aligned_cols=34  Identities=15%  Similarity=0.231  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008764          415 EVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLA  448 (554)
Q Consensus       415 ~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~  448 (554)
                      .+.....+-..+...+.....+..++..|+.++.
T Consensus       280 ~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~  313 (1109)
T PRK10929        280 RMDLIASQQRQAASQTLQVRQALNTLREQSQWLG  313 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3333344445666777777778888888887776

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=96.07  E-value=2.3  Score=44.47  Aligned_cols=30  Identities=23%  Similarity=0.323  Sum_probs=17.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          222 ESSLRAELEAMIHRTAELEQKLERMDAEKV  251 (554)
Q Consensus       222 ~~~l~~ei~~l~~el~eLe~~l~~le~ei~  251 (554)
                      ...+-..+..+..+.+.+..+++.+....+
T Consensus        45 ~e~l~~rv~slsq~Nkvlk~elet~k~kck   74 (552)
T KOG2129|consen   45 GESLGARVSSLSQRNKVLKGELETLKGKCK   74 (552)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhHHhhhhHHH
Confidence            444556666666666666666655544443

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=96.04  E-value=2.3  Score=46.79  Aligned_cols=39  Identities=10%  Similarity=0.106  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          304 AEKAELEMALAKSQDSVEASELQLREATMQLEELQRELN  342 (554)
Q Consensus       304 ~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~  342 (554)
                      .++.+++.++..+..........+..+..+++.++..+.
T Consensus       254 ~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~  292 (498)
T TIGR03007       254 GRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKE  292 (498)
T ss_pred             HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence            334444444444443333333444555555555555443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=96.04  E-value=3.3  Score=46.00  Aligned_cols=14  Identities=7%  Similarity=0.123  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHHH
Q 008764          385 QITVKCQKLEEEQW  398 (554)
Q Consensus       385 e~e~kl~eLe~el~  398 (554)
                      .+-..+.+|...|.
T Consensus       584 ~lvqqv~dLR~~L~  597 (961)
T KOG4673|consen  584 MLVQQVEDLRQTLS  597 (961)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=95.90  E-value=0.0021  Score=75.12  Aligned_cols=38  Identities=18%  Similarity=0.261  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          364 TMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMK  401 (554)
Q Consensus       364 ~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~  401 (554)
                      .+..++..++..++........+......|..++..+.
T Consensus       325 kL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~  362 (859)
T PF01576_consen  325 KLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLT  362 (859)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.83  E-value=2.3  Score=42.48  Aligned_cols=64  Identities=16%  Similarity=0.383  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          229 LEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEK  292 (554)
Q Consensus       229 i~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl  292 (554)
                      |..-...+..+......+..++..|..++..+...+..+..++.....++..++.++..+...+
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I   96 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI   96 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555555555554444444444444444444444444444444444444333333

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=95.82  E-value=3.9  Score=45.04  Aligned_cols=85  Identities=24%  Similarity=0.263  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          232 MIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEM  311 (554)
Q Consensus       232 l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~  311 (554)
                      .++++..|+..-+.+.-++..|..++..--..|.+|+..|+.-...+...++.+++---....|+.+.-.+-.++.+|.-
T Consensus       109 yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKL  188 (861)
T KOG1899|consen  109 YQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKL  188 (861)
T ss_pred             HHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHH
Confidence            34444444444444444455555555555555666666666655555555555444333333333333333333333333


Q ss_pred             HHHHH
Q 008764          312 ALAKS  316 (554)
Q Consensus       312 el~~l  316 (554)
                      .+..+
T Consensus       189 kltal  193 (861)
T KOG1899|consen  189 KLTAL  193 (861)
T ss_pred             HHHHH
Confidence            33333

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=95.80  E-value=5.9  Score=47.00  Aligned_cols=36  Identities=31%  Similarity=0.503  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          252 DLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEK  287 (554)
Q Consensus       252 eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~  287 (554)
                      +...++......+..++..+..+..+++.++.....
T Consensus       498 e~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~  533 (1317)
T KOG0612|consen  498 EVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDN  533 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444555555544444444443333

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=95.73  E-value=2.1  Score=41.35  Aligned_cols=41  Identities=22%  Similarity=0.242  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhc
Q 008764          415 EVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLI  455 (554)
Q Consensus       415 ~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~  455 (554)
                      ++..++..+....-++..++.++..-.+....|..+||=|+
T Consensus       162 e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI  202 (207)
T PF05010_consen  162 ELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELI  202 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555555555556666666666666665444

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.67  E-value=4.4  Score=44.61  Aligned_cols=22  Identities=14%  Similarity=0.422  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 008764          253 LEEKLDKMDAEKAELEEKLEQM  274 (554)
Q Consensus       253 Le~~l~~l~~e~~~l~~~ie~l  274 (554)
                      ++.++..+..++...+..+..+
T Consensus       166 l~~ql~~~~~~L~~ae~~l~~f  187 (498)
T TIGR03007       166 IDEQIKTYEKKLEAAENRLKAF  187 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=95.66  E-value=2.8  Score=42.21  Aligned_cols=95  Identities=18%  Similarity=0.298  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          224 SLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKME  303 (554)
Q Consensus       224 ~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le  303 (554)
                      .+...++.+...+..+...+......+..++..+..+..+...+..+..........+.........+...|...+..+.
T Consensus        21 ~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~  100 (264)
T PF06008_consen   21 KLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQ  100 (264)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666666666555555555666666666666666666666655555555555444445555555555555555


Q ss_pred             HHHHHHHHHHHHHHH
Q 008764          304 AEKAELEMALAKSQD  318 (554)
Q Consensus       304 ~eleele~el~~l~~  318 (554)
                      ..+..+..++..+..
T Consensus       101 ~~i~~l~~~~~~l~~  115 (264)
T PF06008_consen  101 DNIQELIEQVESLNE  115 (264)
T ss_pred             HHHHHHHHHHHHhCc
Confidence            555555555544443

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=95.62  E-value=1.9  Score=42.76  Aligned_cols=109  Identities=19%  Similarity=0.284  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          249 EKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLR  328 (554)
Q Consensus       249 ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~  328 (554)
                      .|.+|+..++.+..+...-.-.++.+++.+................|.++...+-...+.++....++..++...+.++.
T Consensus        19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~   98 (307)
T PF10481_consen   19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVN   98 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHH
Confidence            44445555555555544444455555544444444444444444444444444444444555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008764          329 EATMQLEELQRELNLVNESKRIVESNVSS  357 (554)
Q Consensus       329 ele~ele~l~~el~~l~~~~~~le~~L~~  357 (554)
                      -++..+...+..++.++..+..+...|+.
T Consensus        99 ~lEgQl~s~Kkqie~Leqelkr~KsELEr  127 (307)
T PF10481_consen   99 FLEGQLNSCKKQIEKLEQELKRCKSELER  127 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555554444444444433

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=95.57  E-value=4  Score=43.46  Aligned_cols=15  Identities=33%  Similarity=0.465  Sum_probs=10.6

Q ss_pred             hhHHHhhhhhhhhcc
Q 008764          155 DSWASALIAELDQFK  169 (554)
Q Consensus       155 ~~~a~~li~~~~~~~  169 (554)
                      ..|.++||.|.+..-
T Consensus       199 lhW~V~li~~~~~~~  213 (622)
T COG5185         199 LHWMVRLIIKLDMCL  213 (622)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            578888888765443

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=95.56  E-value=2.8  Score=48.82  Aligned_cols=17  Identities=24%  Similarity=0.302  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 008764          234 HRTAELEQKLERMDAEK  250 (554)
Q Consensus       234 ~el~eLe~~l~~le~ei  250 (554)
                      .++..+..++...+.++
T Consensus       201 ~ql~~l~~~l~~aE~~l  217 (754)
T TIGR01005       201 PEIADLSKQSRDAEAEV  217 (754)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=95.52  E-value=5  Score=44.22  Aligned_cols=22  Identities=23%  Similarity=0.190  Sum_probs=12.9

Q ss_pred             CCCCCcccccccc-ccccccccc
Q 008764          528 NQINPEKNRNGFA-KFFSRTKNG  549 (554)
Q Consensus       528 ~~~~~~~~~~~~~-~~~~~~~~~  549 (554)
                      ++.-.++-||||+ +||--+-++
T Consensus       408 ~pfl~e~kr~~~~g~~~~~~sn~  430 (861)
T KOG1899|consen  408 APFLDELKRNGNEGANHNYSSNS  430 (861)
T ss_pred             chhhhhccccCCcccccccCcCc
Confidence            3344578888887 555444443

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=95.43  E-value=2.9  Score=40.98  Aligned_cols=96  Identities=20%  Similarity=0.177  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          365 MTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQL  444 (554)
Q Consensus       365 l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql  444 (554)
                      ...+|..|+.++..-+....++.....+|-.-+..+..            ++...+.-|--+..+|.+-.+.|..|.+.+
T Consensus       234 s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLde------------dVEgmqsTiliLQq~Lketr~~Iq~l~k~~  301 (330)
T KOG2991|consen  234 SEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDE------------DVEGMQSTILILQQKLKETRKEIQRLKKGL  301 (330)
T ss_pred             hcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH------------HHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566677766666555555555444444444444333            333333334444455555555555555444


Q ss_pred             HHhhchhhhhcccCCccccccCcccccCCcC
Q 008764          445 KSLATLEDFLIDTASIPEFSRAALPIPKTVG  475 (554)
Q Consensus       445 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (554)
                      .   .....++|.-..++-...+.....+||
T Consensus       302 ~---q~sqav~d~~~~~~a~~~~~~~e~~~k  329 (330)
T KOG2991|consen  302 E---QVSQAVGDKKDEVDAIDEDAKEEIAGK  329 (330)
T ss_pred             H---HHHHHhccccccccccCCcchhhcccC
Confidence            3   334566676666665555554444444

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=95.29  E-value=5.6  Score=43.37  Aligned_cols=27  Identities=11%  Similarity=0.163  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          225 LRAELEAMIHRTAELEQKLERMDAEKV  251 (554)
Q Consensus       225 l~~ei~~l~~el~eLe~~l~~le~ei~  251 (554)
                      ...++..++.++..+...+..+...+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~rL~a~~~  121 (457)
T TIGR01000        95 EENQKQLLEQQLDNLKDQKKSLDTLKQ  121 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666666666666666665555443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana

Probab=95.27  E-value=3.8  Score=41.31  Aligned_cols=15  Identities=40%  Similarity=0.361  Sum_probs=7.0

Q ss_pred             CccccCCCCccccCC
Q 008764          476 ESWKLPSNVTFSHKR  490 (554)
Q Consensus       476 ~~~~~~~~~~~~~~~  490 (554)
                      ..|++-+|+..+-+|
T Consensus       191 ~~~~~~sng~~~kr~  205 (351)
T PF07058_consen  191 NFSKLSSNGGLSKRR  205 (351)
T ss_pred             ccccccCCCccccCC
Confidence            445565554333333

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=95.20  E-value=8.9  Score=45.18  Aligned_cols=14  Identities=29%  Similarity=0.496  Sum_probs=10.0

Q ss_pred             ceeeecCCCCCc--cccCCc
Q 008764          196 QLAAMPNNKSGK--HVESGN  213 (554)
Q Consensus       196 rlvtl~~t~~G~--~~~sG~  213 (554)
                      -||.|    .|.  |..+|+
T Consensus       293 NLVDL----AGSENI~RSGA  308 (1041)
T KOG0243|consen  293 NLVDL----AGSENISRSGA  308 (1041)
T ss_pred             ceeec----ccccccccccc
Confidence            46666    777  777877

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=95.15  E-value=6  Score=43.00  Aligned_cols=116  Identities=18%  Similarity=0.277  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          327 LREATMQLEELQRELNLVNESKRIVES---NVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQE  403 (554)
Q Consensus       327 i~ele~ele~l~~el~~l~~~~~~le~---~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e  403 (554)
                      +..++.....++.+++.++..-...+.   .....+.++..+...+..+...+.......+.+...+..+...+..+..+
T Consensus       318 l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~  397 (570)
T COG4477         318 LEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDE  397 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhh
Confidence            333334444444455444443222222   22234455555556666666665555555566666666666666666553


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008764          404 VELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL  447 (554)
Q Consensus       404 ~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L  447 (554)
                      .     ..+...+..++++=..|...+...+.++..+.+-+...
T Consensus       398 q-----~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~  436 (570)
T COG4477         398 Q-----EKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKS  436 (570)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            2     33444555555544456666666666666666555443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.10  E-value=13  Score=46.38  Aligned_cols=41  Identities=29%  Similarity=0.511  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          233 IHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQ  273 (554)
Q Consensus       233 ~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~  273 (554)
                      ..++.+|+..|..+..++..+..++..+...+..+......
T Consensus       741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~  781 (1353)
T TIGR02680       741 LRRIAELDARLAAVDDELAELARELRALGARQRALADELAG  781 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455555555555555555555555555555555444333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=95.03  E-value=7.5  Score=43.43  Aligned_cols=74  Identities=26%  Similarity=0.420  Sum_probs=40.5

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 008764          349 RIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAA  427 (554)
Q Consensus       349 ~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~  427 (554)
                      ..++.++......-..+..++..+..++..+.-...++...|..+.-+-..+..+.     .....+++..++++....
T Consensus       453 ~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~-----~~~~~elKk~qedi~~~k  526 (786)
T PF05483_consen  453 HDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQET-----SDMALELKKQQEDINNSK  526 (786)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhhHHHHHHHHHHHH
Confidence            34444444444444555566666666666666666666667777766655555432     334444555555444333

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=94.96  E-value=6.2  Score=42.08  Aligned_cols=100  Identities=21%  Similarity=0.352  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 008764          243 LERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKM-------EAEKAELEMALAK  315 (554)
Q Consensus       243 l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~l-------e~eleele~el~~  315 (554)
                      |..+...-..-+..++.+...--.|+.++++++..+...+-    +.+-+.+|...+++|       --++.+++..+..
T Consensus       319 L~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqv----fvDiinkLk~niEeLIedKY~viLEKnd~~k~lqn  394 (527)
T PF15066_consen  319 LQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQV----FVDIINKLKENIEELIEDKYRVILEKNDIEKTLQN  394 (527)
T ss_pred             HHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHH
Confidence            33333333344445555555555555555555554433221    112222233333332       2333344444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          316 SQDSVEASELQLREATMQLEELQRELNLVNE  346 (554)
Q Consensus       316 l~~el~~~e~~i~ele~ele~l~~el~~l~~  346 (554)
                      +..-+...+..+.+-..+-+.++.++.++..
T Consensus       395 Lqe~la~tqk~LqEsr~eKetLqlelkK~k~  425 (527)
T PF15066_consen  395 LQEALANTQKHLQESRNEKETLQLELKKIKA  425 (527)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            4444444444444444444444444444443

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=94.89  E-value=3.5  Score=38.84  Aligned_cols=20  Identities=15%  Similarity=0.330  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 008764          422 DLEVAAGKLAECQKTIQSLG  441 (554)
Q Consensus       422 el~~a~~kl~e~q~tI~~L~  441 (554)
                      .+......+......+..+.
T Consensus       153 ~~~~l~~~i~~l~rk~~~l~  172 (177)
T PF13870_consen  153 EVEELRKEIKELERKVEILE  172 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444333

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.87  E-value=0.51  Score=45.26  Aligned_cols=6  Identities=50%  Similarity=0.789  Sum_probs=0.0

Q ss_pred             HHHHHH
Q 008764          253 LEEKLD  258 (554)
Q Consensus       253 Le~~l~  258 (554)
                      +..++.
T Consensus        79 l~~ELa   84 (194)
T PF08614_consen   79 LQEELA   84 (194)
T ss_dssp             ------
T ss_pred             cccccc
Confidence            333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=94.84  E-value=3.1  Score=44.70  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 008764          228 ELEAMIHRTAELEQKLERMDAEK  250 (554)
Q Consensus       228 ei~~l~~el~eLe~~l~~le~ei  250 (554)
                      -.+.|..++..++.+..+++.+.
T Consensus       160 ~~EaL~ekLk~~~een~~lr~k~  182 (596)
T KOG4360|consen  160 LLEALQEKLKPLEEENTQLRSKA  182 (596)
T ss_pred             HHHHHHhhcCChHHHHHHHHHHH
Confidence            34455555555555544444433

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=94.77  E-value=2.9  Score=37.41  Aligned_cols=25  Identities=20%  Similarity=0.284  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          422 DLEVAAGKLAECQKTIQSLGKQLKS  446 (554)
Q Consensus       422 el~~a~~kl~e~q~tI~~L~~ql~~  446 (554)
                      ++..+..++.++...-.-|..|+..
T Consensus       106 e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen  106 ELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4445555555555555555555543

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PRK10869 recombination and repair protein; Provisional

Probab=94.75  E-value=8.9  Score=42.93  Aligned_cols=39  Identities=13%  Similarity=0.128  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          238 ELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDA  276 (554)
Q Consensus       238 eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~  276 (554)
                      .+-..+..+..++..+.........+++.++.+++++..
T Consensus       161 ~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~  199 (553)
T PRK10869        161 AAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNE  199 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            333444444445555544444555555555555555543

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=94.72  E-value=4.2  Score=38.97  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 008764          362 AQTMTAKINSLEEEVEMERALS  383 (554)
Q Consensus       362 i~~l~~~i~~Le~el~~~~~~~  383 (554)
                      +..+...++.|..++..++...
T Consensus       133 ~~~l~~e~erL~aeL~~er~~~  154 (202)
T PF06818_consen  133 LGSLRREVERLRAELQRERQRR  154 (202)
T ss_pred             chhHHHHHHHHHHHHHHHHHhH
Confidence            3445555555555555554433

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF13514 AAA_27: AAA domain

Probab=94.59  E-value=15  Score=44.81  Aligned_cols=24  Identities=42%  Similarity=0.556  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          290 AEKAKLEEKIEKMEAEKAELEMAL  313 (554)
Q Consensus       290 ~kl~~Le~ele~le~eleele~el  313 (554)
                      ..+..++..+..+...+..+...+
T Consensus       808 ~~~~~~~~~~~~~~~~l~~~~~~l  831 (1111)
T PF13514_consen  808 EQLEELEEELEQAEEELEELEAEL  831 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.37  E-value=1.1  Score=46.19  Aligned_cols=30  Identities=7%  Similarity=-0.006  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          373 EEEVEMERALSMQITVKCQKLEEEQWRMKQ  402 (554)
Q Consensus       373 e~el~~~~~~~~e~e~kl~eLe~el~~~~~  402 (554)
                      ..++.........+..++.-....+.++++
T Consensus       105 ~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen  105 QLELIEFQEERDSLKNQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333333344455555555666666654

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.33  E-value=1.1  Score=46.45  Aligned_cols=78  Identities=18%  Similarity=0.211  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          302 MEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEME  379 (554)
Q Consensus       302 le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~  379 (554)
                      ++.+..++..++..++.+...+..++..++.+...+..+..........+..++.....+...+..++......++.+
T Consensus        55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L  132 (314)
T PF04111_consen   55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL  132 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333444444444444444444444444444444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=94.30  E-value=11  Score=44.35  Aligned_cols=24  Identities=17%  Similarity=-0.109  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          378 MERALSMQITVKCQKLEEEQWRMK  401 (554)
Q Consensus       378 ~~~~~~~e~e~kl~eLe~el~~~~  401 (554)
                      +++....+....+..+...+.+..
T Consensus       536 ~l~~~~~~s~~d~s~l~~kld~~~  559 (1041)
T KOG0243|consen  536 KLRRSLEESQDDLSSLFEKLDRKD  559 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhh
Confidence            333334444444444444444443

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=94.29  E-value=15  Score=43.70  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          423 LEVAAGKLAECQKTIQSLGKQLKS  446 (554)
Q Consensus       423 l~~a~~kl~e~q~tI~~L~~ql~~  446 (554)
                      +......+..+...+..+...+..
T Consensus       419 ~~~~~~~l~~~~~~~~~~~~~~~~  442 (908)
T COG0419         419 LEELERELEELEEEIKKLEEQINQ  442 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=94.26  E-value=5.6  Score=39.65  Aligned_cols=10  Identities=30%  Similarity=0.501  Sum_probs=3.9

Q ss_pred             HHHHHHHHHH
Q 008764          392 KLEEEQWRMK  401 (554)
Q Consensus       392 eLe~el~~~~  401 (554)
                      .++.+|..+.
T Consensus       186 ~lq~QL~~L~  195 (246)
T PF00769_consen  186 RLQEQLKELK  195 (246)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=94.10  E-value=18  Score=43.80  Aligned_cols=32  Identities=9%  Similarity=0.074  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhc
Q 008764          424 EVAAGKLAECQKTIQSLGKQLKSLATLEDFLI  455 (554)
Q Consensus       424 ~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~  455 (554)
                      .....++..+...+..+......+..+.++++
T Consensus       856 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~  887 (1047)
T PRK10246        856 ADNRQQQQALMQQIAQATQQVEDWGYLNSLIG  887 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33344555555555555555555555555443

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.09  E-value=3.1  Score=40.95  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=9.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHH
Q 008764          352 ESNVSSMEMEAQTMTAKINSLE  373 (554)
Q Consensus       352 e~~L~~le~ei~~l~~~i~~Le  373 (554)
                      ...+..+..++..+...++.+.
T Consensus        80 ~~~i~r~~eey~~Lk~~in~~R  101 (230)
T PF10146_consen   80 QEKIQRLYEEYKPLKDEINELR  101 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=93.92  E-value=11  Score=40.72  Aligned_cols=28  Identities=11%  Similarity=0.191  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          249 EKVDLEEKLDKMDAEKAELEEKLEQMDA  276 (554)
Q Consensus       249 ei~eLe~~l~~l~~e~~~l~~~ie~l~~  276 (554)
                      ...-++.++..+..++...+..+..|..
T Consensus       172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~  199 (444)
T TIGR03017       172 AALWFVQQIAALREDLARAQSKLSAYQQ  199 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555555555544

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=93.91  E-value=9.3  Score=39.80  Aligned_cols=41  Identities=12%  Similarity=0.109  Sum_probs=27.6

Q ss_pred             cCCcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          210 ESGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEK  250 (554)
Q Consensus       210 ~sG~~tGG~~~~~~~l~~ei~~l~~el~eLe~~l~~le~ei  250 (554)
                      +.|--+||-.+....+..++++++..+.....+....+..+
T Consensus       281 ~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~  321 (593)
T KOG4807|consen  281 SRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSAL  321 (593)
T ss_pred             ccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCchhhH
Confidence            45666777666666778888888888877766655444333

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=93.89  E-value=6.3  Score=37.77  Aligned_cols=16  Identities=6%  Similarity=0.219  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q 008764          229 LEAMIHRTAELEQKLE  244 (554)
Q Consensus       229 i~~l~~el~eLe~~l~  244 (554)
                      |.=|+..+.+...++.
T Consensus        12 IsLLKqQLke~q~E~~   27 (202)
T PF06818_consen   12 ISLLKQQLKESQAEVN   27 (202)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=93.83  E-value=8.1  Score=38.82  Aligned_cols=56  Identities=21%  Similarity=0.366  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          243 LERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEK  298 (554)
Q Consensus       243 l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~e  298 (554)
                      +..+...+..+..+..........+.............+...+..+...+..+-.+
T Consensus        54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~  109 (264)
T PF06008_consen   54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQ  109 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333333333333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=93.76  E-value=0.13  Score=52.53  Aligned_cols=74  Identities=15%  Similarity=0.329  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEK  301 (554)
Q Consensus       228 ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~  301 (554)
                      ++..+.+++..|+..+..+...+..+...+..+...++++...+.++..++..+...+..+...+..+...+..
T Consensus        29 DLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~  102 (326)
T PF04582_consen   29 DLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSS  102 (326)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence            45555666666666555555555555555555555555555555554444444444444443333333333333

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=93.73  E-value=11  Score=40.17  Aligned_cols=54  Identities=22%  Similarity=0.440  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          264 KAELEEKLEQMDAE-------KAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQ  317 (554)
Q Consensus       264 ~~~l~~~ie~l~~e-------l~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~  317 (554)
                      ++.|+..|+++..+       ..+++..++.+..-+...++.+.+-..+++.+..++.++.
T Consensus       364 inkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k  424 (527)
T PF15066_consen  364 INKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIK  424 (527)
T ss_pred             HHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            44455555544332       2233333344443333444444444444444444444333

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=93.66  E-value=20  Score=42.77  Aligned_cols=28  Identities=29%  Similarity=0.503  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008764          421 EDLEVAAGKLAECQKTIQSLGKQLKSLA  448 (554)
Q Consensus       421 eel~~a~~kl~e~q~tI~~L~~ql~~L~  448 (554)
                      ..+......+..+...+..+...+..+.
T Consensus       410 ~~~~e~~~~~~~~~~~l~~~~~~~~~~~  437 (908)
T COG0419         410 EELEELEKELEELERELEELEEEIKKLE  437 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555555555544444

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=93.64  E-value=12  Score=40.34  Aligned_cols=13  Identities=15%  Similarity=0.164  Sum_probs=6.8

Q ss_pred             hhhhhcccCCccc
Q 008764          450 LEDFLIDTASIPE  462 (554)
Q Consensus       450 ~~~~~~~~~~~~~  462 (554)
                      ..-.+++++..|+
T Consensus       377 ~~~~Vi~~a~~P~  389 (444)
T TIGR03017       377 TDISILNPAVPPL  389 (444)
T ss_pred             CceEeeCCCCCCC
Confidence            3344556666554

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=93.58  E-value=10  Score=39.17  Aligned_cols=48  Identities=21%  Similarity=0.183  Sum_probs=18.9

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          353 SNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRM  400 (554)
Q Consensus       353 ~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~  400 (554)
                      ..|.....++.....++..++.++........+...+..++..++...
T Consensus       211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a  258 (312)
T smart00787      211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA  258 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333444444444433333333333344444444333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=93.52  E-value=9.4  Score=40.62  Aligned_cols=12  Identities=42%  Similarity=0.631  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHh
Q 008764          436 TIQSLGKQLKSL  447 (554)
Q Consensus       436 tI~~L~~ql~~L  447 (554)
                      .|..|+.|++.|
T Consensus       436 ~I~dLqEQlrDl  447 (493)
T KOG0804|consen  436 KITDLQEQLRDL  447 (493)
T ss_pred             HHHHHHHHHHhH
Confidence            344444444443

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=93.51  E-value=8.2  Score=37.87  Aligned_cols=15  Identities=13%  Similarity=-0.157  Sum_probs=6.4

Q ss_pred             CCCCccccCCCCCCC
Q 008764          481 PSNVTFSHKRDLNSP  495 (554)
Q Consensus       481 ~~~~~~~~~~~~~~~  495 (554)
                      ..+.|-.|.-|+.++
T Consensus       294 ~d~gtk~~rs~si~~  308 (333)
T KOG1853|consen  294 KDLGTKVERSDSILS  308 (333)
T ss_pred             ccccccccccCcccc
Confidence            333444444444443

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=93.23  E-value=9.8  Score=37.92  Aligned_cols=16  Identities=25%  Similarity=0.447  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHh
Q 008764          432 ECQKTIQSLGKQLKSL  447 (554)
Q Consensus       432 e~q~tI~~L~~ql~~L  447 (554)
                      .++..+..|...|..+
T Consensus       186 ~lq~QL~~L~~EL~~~  201 (246)
T PF00769_consen  186 RLQEQLKELKSELEQL  201 (246)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333344444443333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=93.06  E-value=5.9  Score=34.89  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 008764          227 AELEAMIHRTAELEQKLERMDA  248 (554)
Q Consensus       227 ~ei~~l~~el~eLe~~l~~le~  248 (554)
                      ..|..++.++..+..++..+..
T Consensus        23 s~lr~~E~E~~~l~~el~~l~~   44 (120)
T PF12325_consen   23 SQLRRLEGELASLQEELARLEA   44 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=93.01  E-value=22  Score=41.27  Aligned_cols=8  Identities=63%  Similarity=0.680  Sum_probs=3.0

Q ss_pred             HHHHHHHH
Q 008764          389 KCQKLEEE  396 (554)
Q Consensus       389 kl~eLe~e  396 (554)
                      ++.+|+.+
T Consensus       191 kiakLEaE  198 (769)
T PF05911_consen  191 KIAKLEAE  198 (769)
T ss_pred             HHHHHHHH
Confidence            33333333

The function of this family is unknown.

>TIGR00634 recN DNA repair protein RecN

Probab=92.86  E-value=19  Score=40.35  Aligned_cols=43  Identities=14%  Similarity=0.233  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          239 LEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAEL  281 (554)
Q Consensus       239 Le~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~  281 (554)
                      +...+..+-.+...+...+.++......+..+++.++..+.++
T Consensus       159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL  201 (563)
T TIGR00634       159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEEL  201 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=92.79  E-value=8.6  Score=36.12  Aligned_cols=6  Identities=33%  Similarity=0.661  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 008764          239 LEQKLE  244 (554)
Q Consensus       239 Le~~l~  244 (554)
                      +...+.
T Consensus        18 lk~~l~   23 (177)
T PF13870_consen   18 LKHQLA   23 (177)
T ss_pred             HHHHHH
Confidence            333333

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=92.77  E-value=20  Score=40.25  Aligned_cols=14  Identities=36%  Similarity=0.199  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHH
Q 008764          428 GKLAECQKTIQSLG  441 (554)
Q Consensus       428 ~kl~e~q~tI~~L~  441 (554)
                      ..+.+.+.+|.+|.
T Consensus       349 ~~v~e~qtti~~L~  362 (786)
T PF05483_consen  349 FVVTELQTTICNLK  362 (786)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34444444444433

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=92.68  E-value=14  Score=38.16  Aligned_cols=49  Identities=16%  Similarity=0.262  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          330 ATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEM  378 (554)
Q Consensus       330 le~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~  378 (554)
                      +-.+++.++.++..++..+..+-...+++..+...++.+.+.|..++..
T Consensus       131 lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~  179 (319)
T PF09789_consen  131 LVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNY  179 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555555566666666666666666666666644

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=92.65  E-value=14  Score=38.15  Aligned_cols=87  Identities=15%  Similarity=0.216  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          361 EAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQ--QIAKSNAEVKIKQEDLEVAAGKLAECQKTIQ  438 (554)
Q Consensus       361 ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~--~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~  438 (554)
                      ++.-+..+++.++..+.+-......+...+.++...+.++.++...|  ..+..+..+-...++-......+......+.
T Consensus       217 QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~  296 (309)
T PF09728_consen  217 QLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIE  296 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444433333333333333333333333333332222  1222333333333333334444444555555


Q ss_pred             HHHHHHHHh
Q 008764          439 SLGKQLKSL  447 (554)
Q Consensus       439 ~L~~ql~~L  447 (554)
                      .|++-+..|
T Consensus       297 kLe~LcRaL  305 (309)
T PF09728_consen  297 KLEKLCRAL  305 (309)
T ss_pred             HHHHHHHHH
Confidence            555444444

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=92.56  E-value=10  Score=40.97  Aligned_cols=29  Identities=21%  Similarity=0.323  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          234 HRTAELEQKLERMDAEKVDLEEKLDKMDA  262 (554)
Q Consensus       234 ~el~eLe~~l~~le~ei~eLe~~l~~l~~  262 (554)
                      ..+..|..+|..++.++..+..+...+..
T Consensus       159 ~~~EaL~ekLk~~~een~~lr~k~~llk~  187 (596)
T KOG4360|consen  159 ELLEALQEKLKPLEEENTQLRSKAMLLKT  187 (596)
T ss_pred             HHHHHHHhhcCChHHHHHHHHHHHHHHHh
Confidence            44455666666666666666655554443

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=92.33  E-value=7.9  Score=42.77  Aligned_cols=16  Identities=31%  Similarity=0.480  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q 008764          363 QTMTAKINSLEEEVEM  378 (554)
Q Consensus       363 ~~l~~~i~~Le~el~~  378 (554)
                      ..+..+|..|+.++..
T Consensus       477 ~~~~~~I~~L~~~L~e  492 (652)
T COG2433         477 RARDRRIERLEKELEE  492 (652)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333444444433333

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=92.17  E-value=0.15  Score=58.98  Aligned_cols=55  Identities=13%  Similarity=0.200  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccCCccccccCcc
Q 008764          414 AEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRAAL  468 (554)
Q Consensus       414 ~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~~~~~~~~~~~~~~  468 (554)
                      ..+..++.++..+...+..+...+..|+.++..+.=..+|-.....+..|...|+
T Consensus       503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~  557 (722)
T PF05557_consen  503 EELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPT  557 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcH
Confidence            3444455667777777777777777777777664211133233333444544444

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=92.09  E-value=13  Score=36.59  Aligned_cols=23  Identities=13%  Similarity=0.231  Sum_probs=8.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHH
Q 008764          351 VESNVSSMEMEAQTMTAKINSLE  373 (554)
Q Consensus       351 le~~L~~le~ei~~l~~~i~~Le  373 (554)
                      +..-+..+..+++.++.-|-.|+
T Consensus       262 L~dfm~eLdedVEgmqsTiliLQ  284 (330)
T KOG2991|consen  262 LYDFMEELDEDVEGMQSTILILQ  284 (330)
T ss_pred             HHHHHHHHHHHHhcchhhHHHHH
Confidence            33333333333333333333333

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=91.84  E-value=17  Score=37.27  Aligned_cols=23  Identities=17%  Similarity=0.193  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 008764          418 IKQEDLEVAAGKLAECQKTIQSL  440 (554)
Q Consensus       418 ~~qeel~~a~~kl~e~q~tI~~L  440 (554)
                      ..|.-|..+.+|++++--+|.+|
T Consensus       198 kRQ~yI~~LEsKVqDLm~EirnL  220 (401)
T PF06785_consen  198 KRQAYIGKLESKVQDLMYEIRNL  220 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555655555555544

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=91.79  E-value=16  Score=39.03  Aligned_cols=17  Identities=18%  Similarity=0.153  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 008764          385 QITVKCQKLEEEQWRMK  401 (554)
Q Consensus       385 e~e~kl~eLe~el~~~~  401 (554)
                      ....++.+|++++..+.
T Consensus       432 s~d~~I~dLqEQlrDlm  448 (493)
T KOG0804|consen  432 SKDEKITDLQEQLRDLM  448 (493)
T ss_pred             HHHHHHHHHHHHHHhHh
Confidence            34444556666665555

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=91.65  E-value=38  Score=41.01  Aligned_cols=32  Identities=9%  Similarity=0.041  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhc
Q 008764          424 EVAAGKLAECQKTIQSLGKQLKSLATLEDFLI  455 (554)
Q Consensus       424 ~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~  455 (554)
                      .....++++..-..-.++.+.+.+........
T Consensus       336 ~~l~~~IAdlRl~~f~~~q~~~~l~~i~~~~~  367 (1109)
T PRK10929        336 QQLDTEMAQLRVQRLRYEDLLNKQPQLRQIRQ  367 (1109)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence            44455566666555566666555554443333

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=91.49  E-value=13  Score=39.20  Aligned_cols=17  Identities=18%  Similarity=0.427  Sum_probs=7.1

Q ss_pred             HhHHHHHHHHHHHHHHH
Q 008764          353 SNVSSMEMEAQTMTAKI  369 (554)
Q Consensus       353 ~~L~~le~ei~~l~~~i  369 (554)
                      ..+..++.++..+.-+|
T Consensus       335 qAl~kLk~EI~qMdvrI  351 (359)
T PF10498_consen  335 QALTKLKQEIKQMDVRI  351 (359)
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            33444444444444333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=91.09  E-value=5.3  Score=44.07  Aligned_cols=40  Identities=33%  Similarity=0.624  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          234 HRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQ  273 (554)
Q Consensus       234 ~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~  273 (554)
                      .++..++..++.++.++..|+..+.++..++..|+.++..
T Consensus       422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~  461 (652)
T COG2433         422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELER  461 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=91.05  E-value=27  Score=38.18  Aligned_cols=49  Identities=6%  Similarity=0.027  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 008764           47 MELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLK   95 (554)
Q Consensus        47 ~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr   95 (554)
                      .++-++.+.+..+++.++...+.+..+..+--.+-..+...-...+.+|
T Consensus       104 ~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr  152 (570)
T COG4477         104 HEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELR  152 (570)
T ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444443333334444

>PRK11281 hypothetical protein; Provisional

Probab=90.97  E-value=45  Score=40.53  Aligned_cols=32  Identities=19%  Similarity=0.314  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLD  258 (554)
Q Consensus       227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~  258 (554)
                      .+++...++..+++..+..+.+++.....++.
T Consensus        73 ~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le  104 (1113)
T PRK11281         73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELE  104 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34444444444555555544444444444443

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=90.97  E-value=23  Score=37.29  Aligned_cols=6  Identities=33%  Similarity=0.739  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 008764          255 EKLDKM  260 (554)
Q Consensus       255 ~~l~~l  260 (554)
                      ..+.++
T Consensus       220 ~hleqm  225 (359)
T PF10498_consen  220 SHLEQM  225 (359)
T ss_pred             HHHHHH
Confidence            333333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=90.88  E-value=26  Score=37.63  Aligned_cols=18  Identities=11%  Similarity=0.362  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 008764          227 AELEAMIHRTAELEQKLE  244 (554)
Q Consensus       227 ~ei~~l~~el~eLe~~l~  244 (554)
                      .+|+.++..+..+.+++.
T Consensus       271 ~~i~~lk~~n~~l~e~i~  288 (622)
T COG5185         271 TDIANLKTQNDNLYEKIQ  288 (622)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            445555555544444433

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=90.85  E-value=18  Score=35.78  Aligned_cols=9  Identities=0%  Similarity=0.272  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q 008764          433 CQKTIQSLG  441 (554)
Q Consensus       433 ~q~tI~~L~  441 (554)
                      .+.++....
T Consensus       216 ae~~~~~a~  224 (240)
T PF12795_consen  216 AEQAVEEAE  224 (240)
T ss_pred             HHHHHHHHH
Confidence            333333333

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.58  E-value=30  Score=37.86  Aligned_cols=59  Identities=25%  Similarity=0.374  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          256 KLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALA  314 (554)
Q Consensus       256 ~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~  314 (554)
                      ++.....+..+|...|..++..+.+.+..+.++......|-....+....+..++..+.
T Consensus       332 eIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalE  390 (654)
T KOG4809|consen  332 EIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALE  390 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence            33344444444444444444444444444444444444443333333333333333333

>PF13514 AAA_27: AAA domain

Probab=90.25  E-value=53  Score=40.19  Aligned_cols=16  Identities=13%  Similarity=0.322  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHHH
Q 008764          428 GKLAECQKTIQSLGKQ  443 (554)
Q Consensus       428 ~kl~e~q~tI~~L~~q  443 (554)
                      .+++.....|..+-.+
T Consensus       940 ~e~e~~~a~l~~~~~~  955 (1111)
T PF13514_consen  940 QEREEAEAELEELAEE  955 (1111)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=90.23  E-value=1.1  Score=51.80  Aligned_cols=57  Identities=21%  Similarity=0.183  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhchhhhhcccCCccccccC-----cccccCCcCCccccCCCCcccc
Q 008764          427 AGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRA-----ALPIPKTVGESWKLPSNVTFSH  488 (554)
Q Consensus       427 ~~kl~e~q~tI~~L~~ql~~L~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  488 (554)
                      ...+.+++..|..+.+....|   .+.|...  +-+|--.     |-.+.-.+.-..++.|.-...|
T Consensus       605 ~~e~~~l~~~~~~~ekr~~RL---kevf~~k--s~eFr~av~~llGyki~~~~~~~~rl~S~ya~~~  666 (722)
T PF05557_consen  605 EKEIAELKAELASAEKRNQRL---KEVFKAK--SQEFREAVYSLLGYKIDFMPNGRVRLTSMYAESP  666 (722)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHSEEEEEETTTEEEEEETT-SST
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHhcceeeecCCCeEEEEecccCCC
Confidence            334556666666666555444   4566544  3444333     2233333344456655543333

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=90.09  E-value=19  Score=34.94  Aligned_cols=6  Identities=17%  Similarity=0.307  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 008764          302 MEAEKA  307 (554)
Q Consensus       302 le~ele  307 (554)
                      ++..+.
T Consensus       103 l~~~~~  108 (221)
T PF04012_consen  103 LEQQLD  108 (221)
T ss_pred             HHHHHH
Confidence            333333

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=90.02  E-value=0.09  Score=60.59  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 008764          355 VSSMEMEAQTMTAKINSLEEEV  376 (554)
Q Consensus       355 L~~le~ei~~l~~~i~~Le~el  376 (554)
                      +..++.....+......|+.++
T Consensus       334 vk~Lee~N~~l~e~~~~LEeel  355 (713)
T PF05622_consen  334 VKELEEDNAVLLETKAMLEEEL  355 (713)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333444333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=89.98  E-value=39  Score=38.25  Aligned_cols=13  Identities=31%  Similarity=0.330  Sum_probs=7.4

Q ss_pred             CCCcccccccccc
Q 008764          530 INPEKNRNGFAKF  542 (554)
Q Consensus       530 ~~~~~~~~~~~~~  542 (554)
                      ..++-+|--|++.
T Consensus       453 ~~~~~~r~~~~t~  465 (916)
T KOG0249|consen  453 VVSEDNRYDKATI  465 (916)
T ss_pred             cccccccccCCCC
Confidence            4556666666644

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=89.75  E-value=24  Score=35.61  Aligned_cols=9  Identities=0%  Similarity=-0.186  Sum_probs=3.4

Q ss_pred             hcccCCccc
Q 008764          454 LIDTASIPE  462 (554)
Q Consensus       454 ~~~~~~~~~  462 (554)
                      +.+..=+|.
T Consensus       214 yL~v~Lpy~  222 (302)
T PF10186_consen  214 YLGVPLPYP  222 (302)
T ss_pred             HhCCCCCCC
Confidence            333333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=89.42  E-value=0.11  Score=59.98  Aligned_cols=9  Identities=0%  Similarity=0.124  Sum_probs=3.7

Q ss_pred             CCCceeccC
Q 008764          174 VNRNLSASS  182 (554)
Q Consensus       174 ~g~~~v~~~  182 (554)
                      +|=.+-|+.
T Consensus       119 LgcAV~c~~  127 (713)
T PF05622_consen  119 LGCAVQCEN  127 (713)
T ss_dssp             HHHTTSSST
T ss_pred             HHHhhcCcc
Confidence            333444444

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.41  E-value=37  Score=37.18  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 008764          228 ELEAMIHRTAELEQKLERMDA  248 (554)
Q Consensus       228 ei~~l~~el~eLe~~l~~le~  248 (554)
                      +|+..+.+++.|.+.+..+..
T Consensus       332 eIe~~~ke~kdLkEkv~~lq~  352 (654)
T KOG4809|consen  332 EIESFRKENKDLKEKVNALQA  352 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

>PF14992 TMCO5: TMCO5 family

Probab=89.23  E-value=27  Score=35.29  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhch
Q 008764          428 GKLAECQKTIQSLGKQLKSLATL  450 (554)
Q Consensus       428 ~kl~e~q~tI~~L~~ql~~L~~~  450 (554)
                      .++++ ++.+.-|++++......
T Consensus       161 ~rmE~-ekE~~lLe~el~k~q~~  182 (280)
T PF14992_consen  161 RRMEE-EKEMLLLEKELSKYQMQ  182 (280)
T ss_pred             HHHHH-HHHHHHHHHHHHHHhch
Confidence            55556 55566677766655543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=88.97  E-value=25  Score=37.14  Aligned_cols=16  Identities=13%  Similarity=0.169  Sum_probs=8.4

Q ss_pred             CCccccCCCCccccCCC
Q 008764          475 GESWKLPSNVTFSHKRD  491 (554)
Q Consensus       475 ~~~~~~~~~~~~~~~~~  491 (554)
                      -..|+.|.. -|+|.+|
T Consensus       173 ~h~gev~~v-~~l~~sd  188 (459)
T KOG0288|consen  173 AHEGEVHDV-EFLRNSD  188 (459)
T ss_pred             cccccccee-EEccCcc
Confidence            355666653 3455544

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=88.83  E-value=31  Score=35.58  Aligned_cols=71  Identities=13%  Similarity=0.154  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          370 NSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQ--QIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSL  440 (554)
Q Consensus       370 ~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~--~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L  440 (554)
                      ..+...-..++..+.-+..++.+++..+..-+.-+..+  ..+.....++.+..+-.....+.+.|..+|..+
T Consensus       205 ~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m  277 (309)
T PF09728_consen  205 QTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEM  277 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            33333333444444555555555555544433311111  122333333434334444444555555444433

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=88.78  E-value=40  Score=36.79  Aligned_cols=61  Identities=15%  Similarity=0.157  Sum_probs=33.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 008764           34 KLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRA  101 (554)
Q Consensus        34 rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~k~  101 (554)
                      +..-++.....|..++..+..       .++..+.+.-.+....+..-..++.--.+..+|+..+...
T Consensus        14 ~~~Ql~~~~~~lqaev~~lr~-------~~~~~e~~~~~l~~el~qvr~~~~~Q~seL~~l~~ev~~~   74 (531)
T PF15450_consen   14 RWKQLEQWVAELQAEVACLRG-------HKERCERATLSLLRELLQVRARVQLQDSELMQLRQEVKQR   74 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333445555555555555544       3344445555555555555556666666777777766654

>PF13166 AAA_13: AAA domain

Probab=88.77  E-value=51  Score=37.98  Aligned_cols=26  Identities=15%  Similarity=0.364  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008764          422 DLEVAAGKLAECQKTIQSLGKQLKSL  447 (554)
Q Consensus       422 el~~a~~kl~e~q~tI~~L~~ql~~L  447 (554)
                      ++..+...+......+..+...+..+
T Consensus       446 ~i~~l~~~~~~~~~~~~~iN~~L~~~  471 (712)
T PF13166_consen  446 EIKELEAQLKNTEPAADRINEELKRL  471 (712)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            33334444443444444444444444

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=88.66  E-value=42  Score=36.82  Aligned_cols=97  Identities=15%  Similarity=0.213  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 008764          337 LQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEV  416 (554)
Q Consensus       337 l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~l  416 (554)
                      ...++..+-..++.++.+...+..+...+..++...+.+.+........+..++..|++++...+.        ..+.++
T Consensus       418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~--------NYE~QL  489 (518)
T PF10212_consen  418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRR--------NYEEQL  489 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hHHHHH
Confidence            345566666666666677777777777777777777777666666666677777777777766553        244455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          417 KIKQEDLEVAAGKLAECQKTIQSLG  441 (554)
Q Consensus       417 k~~qeel~~a~~kl~e~q~tI~~L~  441 (554)
                      ..+.+-|..+..+|..-..+|..|+
T Consensus       490 s~MSEHLasmNeqL~~Q~eeI~~LK  514 (518)
T PF10212_consen  490 SMMSEHLASMNEQLAKQREEIQTLK  514 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555566666666666666666654

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=88.53  E-value=31  Score=35.26  Aligned_cols=17  Identities=24%  Similarity=0.436  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 008764          386 ITVKCQKLEEEQWRMKQ  402 (554)
Q Consensus       386 ~e~kl~eLe~el~~~~~  402 (554)
                      ....+..|..++.+++.
T Consensus       227 ~~shI~~Lr~EV~RLR~  243 (310)
T PF09755_consen  227 LSSHIRSLRQEVSRLRQ  243 (310)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33334444444444443

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=88.36  E-value=23  Score=33.46  Aligned_cols=40  Identities=18%  Similarity=0.213  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccCC
Q 008764          419 KQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTAS  459 (554)
Q Consensus       419 ~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~~~~~  459 (554)
                      +++++.....||.+++.....|-+.-..|..++ +..|...
T Consensus       106 mr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElc-l~LDeer  145 (195)
T PF10226_consen  106 MRQEVAQYQQKLKELEDKQEELIRENLELKELC-LYLDEER  145 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhccc
Confidence            455777788888888777777777777776555 4444444

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=88.34  E-value=53  Score=37.61  Aligned_cols=7  Identities=29%  Similarity=0.135  Sum_probs=3.3

Q ss_pred             cccCCCC
Q 008764          486 FSHKRDL  492 (554)
Q Consensus       486 ~~~~~~~  492 (554)
                      .++|.|+
T Consensus       657 ~~~kq~s  663 (861)
T PF15254_consen  657 TLSKQDS  663 (861)
T ss_pred             ccccccc
Confidence            4445554

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=88.34  E-value=50  Score=37.39  Aligned_cols=11  Identities=27%  Similarity=0.848  Sum_probs=7.3

Q ss_pred             ccccccccccc
Q 008764          539 FAKFFSRTKNG  549 (554)
Q Consensus       539 ~~~~~~~~~~~  549 (554)
                      .|+||-++++|
T Consensus       526 i~r~f~kk~~~  536 (916)
T KOG0249|consen  526 IGRLFGKKENG  536 (916)
T ss_pred             HHHHHhhhccc
Confidence            56777776665

>PLN02939 transferase, transferring glycosyl groups

Probab=88.05  E-value=65  Score=38.34  Aligned_cols=15  Identities=27%  Similarity=0.246  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHH
Q 008764          385 QITVKCQKLEEEQWR  399 (554)
Q Consensus       385 e~e~kl~eLe~el~~  399 (554)
                      ++..++.+|+.-+.+
T Consensus       328 ~~~~~~~~~~~~~~~  342 (977)
T PLN02939        328 DLRDKVDKLEASLKE  342 (977)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444443

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=87.90  E-value=45  Score=36.33  Aligned_cols=26  Identities=23%  Similarity=0.230  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008764          422 DLEVAAGKLAECQKTIQSLGKQLKSL  447 (554)
Q Consensus       422 el~~a~~kl~e~q~tI~~L~~ql~~L  447 (554)
                      ++..+..++...+..+..+...+...
T Consensus       292 ~l~~~~~~l~~~~~~l~~a~~~l~~~  317 (457)
T TIGR01000       292 EITDLNQKLLELESKIKSLKEDSQKG  317 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            45555556666666565555555443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=87.65  E-value=7.5  Score=37.44  Aligned_cols=15  Identities=27%  Similarity=0.472  Sum_probs=8.4

Q ss_pred             ceeccCchh---hcchhh
Q 008764          177 NLSASSPEI---DLMDDF  191 (554)
Q Consensus       177 ~~v~~~~~~---~l~~~~  191 (554)
                      .+++.+.|.   .|.+.|
T Consensus        61 vlIATDaD~~GReLA~kf   78 (290)
T COG4026          61 VLIATDADRVGRELAEKF   78 (290)
T ss_pred             EEEeecCcchhHHHHHHH
Confidence            455666655   555555

>PF13166 AAA_13: AAA domain

Probab=87.30  E-value=62  Score=37.28  Aligned_cols=26  Identities=31%  Similarity=0.408  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008764          422 DLEVAAGKLAECQKTIQSLGKQLKSL  447 (554)
Q Consensus       422 el~~a~~kl~e~q~tI~~L~~ql~~L  447 (554)
                      .+..+...+......|..|..++...
T Consensus       432 ~~~~~~~~~~~~~~~i~~l~~~~~~~  457 (712)
T PF13166_consen  432 KLKKAKEEIKKIEKEIKELEAQLKNT  457 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34445555555555566666555433

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=86.59  E-value=37  Score=34.02  Aligned_cols=16  Identities=19%  Similarity=0.412  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q 008764          422 DLEVAAGKLAECQKTI  437 (554)
Q Consensus       422 el~~a~~kl~e~q~tI  437 (554)
                      +|+.-..||+-+-..+
T Consensus       153 DINiQN~KLEsLLqsM  168 (305)
T PF15290_consen  153 DINIQNKKLESLLQSM  168 (305)
T ss_pred             hhhhhHhHHHHHHHHH
Confidence            4444445554444433

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=86.48  E-value=23  Score=36.34  Aligned_cols=55  Identities=22%  Similarity=0.345  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          229 LEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEE  283 (554)
Q Consensus       229 i~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~  283 (554)
                      +..+...+.+++.++..+--....|.++-..+..+++.|+..+.+++..+..+..
T Consensus        79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~r  133 (302)
T PF09738_consen   79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQR  133 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666667777666655544444444444444444444444444444443333

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=86.37  E-value=68  Score=36.80  Aligned_cols=49  Identities=22%  Similarity=0.249  Sum_probs=23.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          354 NVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQ  402 (554)
Q Consensus       354 ~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~  402 (554)
                      ....+.........++..|..++..++.....+...+..+..+..+...
T Consensus       228 ~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~  276 (670)
T KOG0239|consen  228 NIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALK  276 (670)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444445555555555555555555555555555544443

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=86.09  E-value=21  Score=30.72  Aligned_cols=26  Identities=19%  Similarity=0.392  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          231 AMIHRTAELEQKLERMDAEKVDLEEK  256 (554)
Q Consensus       231 ~l~~el~eLe~~l~~le~ei~eLe~~  256 (554)
                      .+......+..++..+..++..++..
T Consensus         7 ~~~~~~q~~q~~~~~l~~q~~~le~~   32 (110)
T TIGR02338         7 NQLAQLQQLQQQLQAVATQKQQVEAQ   32 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444443333333

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=85.86  E-value=64  Score=35.97  Aligned_cols=41  Identities=24%  Similarity=0.230  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          236 TAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDA  276 (554)
Q Consensus       236 l~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~  276 (554)
                      ....-..|.++..++..+....++...+++-++-++++++.
T Consensus       159 ~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~  199 (557)
T COG0497         159 YQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEE  199 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444556666666666666666777777777777766654

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=85.57  E-value=27  Score=35.82  Aligned_cols=55  Identities=25%  Similarity=0.309  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKA  279 (554)
Q Consensus       225 l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~  279 (554)
                      ++..+.++++......-...++..+...+-=+++-|...+.+++..+..+..++.
T Consensus        82 lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~  136 (302)
T PF09738_consen   82 LKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR  136 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555544444444444444444444444444444444444444444443

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=85.24  E-value=56  Score=34.78  Aligned_cols=100  Identities=20%  Similarity=0.239  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          303 EAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERAL  382 (554)
Q Consensus       303 e~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~  382 (554)
                      +.+..++...+..+....+.+..........|+.+..++-..++.....-..|...+.+....+.-+..+..++...+..
T Consensus       310 eeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~  389 (502)
T KOG0982|consen  310 EEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRR  389 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333344444445555555544444444444444444444444444444454444443332


Q ss_pred             HHHHH--------HHHHHHHHHHHHHHH
Q 008764          383 SMQIT--------VKCQKLEEEQWRMKQ  402 (554)
Q Consensus       383 ~~e~e--------~kl~eLe~el~~~~~  402 (554)
                      ...+.        .+..+++.++.++++
T Consensus       390 kl~~a~p~rgrsSaRe~eleqevkrLrq  417 (502)
T KOG0982|consen  390 KLVLANPVRGRSSAREIELEQEVKRLRQ  417 (502)
T ss_pred             HHHhhccccCchhHHHHHHHHHHHHhcc
Confidence            22221        444555555555554

>PLN02939 transferase, transferring glycosyl groups

Probab=85.08  E-value=92  Score=37.14  Aligned_cols=16  Identities=25%  Similarity=0.468  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q 008764          363 QTMTAKINSLEEEVEM  378 (554)
Q Consensus       363 ~~l~~~i~~Le~el~~  378 (554)
                      ..++.+++.|+.-++.
T Consensus       327 ~~~~~~~~~~~~~~~~  342 (977)
T PLN02939        327 QDLRDKVDKLEASLKE  342 (977)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            4556666666655543

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=84.91  E-value=39  Score=32.76  Aligned_cols=10  Identities=30%  Similarity=0.723  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q 008764          292 KAKLEEKIEK  301 (554)
Q Consensus       292 l~~Le~ele~  301 (554)
                      ...++.++..
T Consensus        53 ~~~le~~~~~   62 (221)
T PF04012_consen   53 QKRLERKLDE   62 (221)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK09343 prefoldin subunit beta; Provisional

Probab=84.01  E-value=29  Score=30.52  Aligned_cols=32  Identities=28%  Similarity=0.477  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLD  258 (554)
Q Consensus       227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~  258 (554)
                      .+++..-..+..+..++..+..++..++..+.
T Consensus         7 ~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~   38 (121)
T PRK09343          7 PEVQAQLAQLQQLQQQLERLLQQKSQIDLELR   38 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444433333

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=83.99  E-value=1.1e+02  Score=37.19  Aligned_cols=16  Identities=6%  Similarity=0.246  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHHH
Q 008764          422 DLEVAAGKLAECQKTI  437 (554)
Q Consensus       422 el~~a~~kl~e~q~tI  437 (554)
                      .+......+.......
T Consensus       861 ~~~~~~~~~~~~~~~~  876 (1047)
T PRK10246        861 QQQALMQQIAQATQQV  876 (1047)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444444333

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=83.93  E-value=50  Score=33.16  Aligned_cols=35  Identities=20%  Similarity=0.317  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDA  262 (554)
Q Consensus       228 ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~  262 (554)
                      -|..|+.++++-+..|+.-+.+|.+|+.++.+++.
T Consensus        69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrE  103 (305)
T PF15290_consen   69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMRE  103 (305)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            45566666666666665555555555555444443

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.71  E-value=67  Score=34.45  Aligned_cols=40  Identities=23%  Similarity=0.272  Sum_probs=18.0

Q ss_pred             hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 008764          224 SLRAELEAMIHRTAELE---QKLERMDAEKVDLEEKLDKMDAE  263 (554)
Q Consensus       224 ~l~~ei~~l~~el~eLe---~~l~~le~ei~eLe~~l~~l~~e  263 (554)
                      +...+++.+.+..++..   ....+....+..++.....+...
T Consensus       228 se~ee~eel~eq~eeneel~ae~kqh~v~~~ales~~sq~~e~  270 (521)
T KOG1937|consen  228 SEEEEVEELTEQNEENEELQAEYKQHLVEYKALESKRSQFEEQ  270 (521)
T ss_pred             ccchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            34455666666655442   22333333444444444443333

>PRK04406 hypothetical protein; Provisional

Probab=83.35  E-value=13  Score=29.89  Aligned_cols=50  Identities=8%  Similarity=0.023  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 008764           50 LIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMAC   99 (554)
Q Consensus        50 ~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~   99 (554)
                      ..+...+..++..+.+.+.+++.++.-..+.++.|++|..+|+.|..-+.
T Consensus         7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~   56 (75)
T PRK04406          7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK   56 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667788888888899999999999999999999999999988865443

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=82.97  E-value=42  Score=31.56  Aligned_cols=34  Identities=26%  Similarity=0.193  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          367 AKINSLEEEVEMERALSMQITVKCQKLEEEQWRM  400 (554)
Q Consensus       367 ~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~  400 (554)
                      .+++.|+.+...+.....-++.++..|+..+..-
T Consensus       120 ekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eE  153 (178)
T PF14073_consen  120 EKLEKLEKEYLRLTATQSLAETKIKELEEKLQEE  153 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555666666666655543

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=82.94  E-value=70  Score=34.08  Aligned_cols=16  Identities=25%  Similarity=0.424  Sum_probs=8.7

Q ss_pred             hhhhccccccCCCcee
Q 008764          164 ELDQFKNEKAVNRNLS  179 (554)
Q Consensus       164 ~~~~~~~~~~~g~~~v  179 (554)
                      |.+-|+..++-|.++.
T Consensus       153 yve~fk~~kv~G~alP  168 (575)
T KOG4403|consen  153 YVEAFKAKKVDGKALP  168 (575)
T ss_pred             HHHHHHhccCCccccc
Confidence            3344444677776543

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=82.93  E-value=58  Score=37.81  Aligned_cols=37  Identities=19%  Similarity=0.212  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          241 QKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAE  277 (554)
Q Consensus       241 ~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~e  277 (554)
                      .+.......+.-+..++..+..++...+..++.+..+
T Consensus       260 ~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~  296 (726)
T PRK09841        260 RQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ  296 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444555666666666666666666665543

>PRK11519 tyrosine kinase; Provisional

Probab=82.67  E-value=73  Score=36.95  Aligned_cols=32  Identities=16%  Similarity=0.193  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          246 MDAEKVDLEEKLDKMDAEKAELEEKLEQMDAE  277 (554)
Q Consensus       246 le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~e  277 (554)
                      ....+.-++.++..+..++...+..++.+..+
T Consensus       265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~  296 (719)
T PRK11519        265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD  296 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444556666666666666666666666543

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=82.54  E-value=72  Score=33.98  Aligned_cols=9  Identities=44%  Similarity=0.449  Sum_probs=3.5

Q ss_pred             HHHHHHHHH
Q 008764          432 ECQKTIQSL  440 (554)
Q Consensus       432 e~q~tI~~L  440 (554)
                      +++.+|..+
T Consensus       428 elngtilTl  436 (502)
T KOG0982|consen  428 ELNGTILTL  436 (502)
T ss_pred             hhhhhhhhH
Confidence            333344333

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=82.31  E-value=37  Score=30.45  Aligned_cols=33  Identities=18%  Similarity=0.445  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKM  260 (554)
Q Consensus       228 ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l  260 (554)
                      +++.+...+..+...+..+...+..+...+.++
T Consensus         7 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~   39 (140)
T PRK03947          7 ELEELAAQLQALQAQIEALQQQLEELQASINEL   39 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555444444444444433

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=81.92  E-value=1e+02  Score=35.35  Aligned_cols=32  Identities=9%  Similarity=0.171  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchhhhhcccCC
Q 008764          428 GKLAECQKTIQSLGKQLKSLATLEDFLIDTAS  459 (554)
Q Consensus       428 ~kl~e~q~tI~~L~~ql~~L~~~~~~~~~~~~  459 (554)
                      ..-..|..+|..|...+.-.....-++.+..+
T Consensus       300 ~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~  331 (670)
T KOG0239|consen  300 EERRKLHNEILELKGNIRVFCRVRPLLPSEKQ  331 (670)
T ss_pred             HHHHHHHHHHHHhhcCceEEEEecCCCccccc
Confidence            44556777788888888877766666665555

>PF14992 TMCO5: TMCO5 family

Probab=81.75  E-value=62  Score=32.70  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKM  260 (554)
Q Consensus       227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l  260 (554)
                      .+.+.+.+..+.+-.++...+..+..|+.++..+
T Consensus        11 ~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~   44 (280)
T PF14992_consen   11 KDEQRLDEANQSLLQKIQEKEGAIQSLEREITKM   44 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555555555554443

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=81.43  E-value=62  Score=32.50  Aligned_cols=9  Identities=22%  Similarity=0.135  Sum_probs=3.5

Q ss_pred             hHHHhhhhh
Q 008764          156 SWASALIAE  164 (554)
Q Consensus       156 ~~a~~li~~  164 (554)
                      +|....|.+
T Consensus        57 sftl~~~~~   65 (269)
T PF05278_consen   57 SFTLSEIEC   65 (269)
T ss_pred             cccHHHHHH
Confidence            333333433

>PRK09343 prefoldin subunit beta; Provisional

Probab=81.12  E-value=38  Score=29.79  Aligned_cols=42  Identities=17%  Similarity=0.263  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          233 IHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQM  274 (554)
Q Consensus       233 ~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l  274 (554)
                      ...+...-..++.+..++..+....+.+...+.+...-+.++
T Consensus         6 ~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL   47 (121)
T PRK09343          6 PPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEEL   47 (121)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444455444455544444444444433333

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=81.09  E-value=42  Score=32.62  Aligned_cols=47  Identities=15%  Similarity=0.261  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008764          327 LREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLE  373 (554)
Q Consensus       327 i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le  373 (554)
                      +..++.+++....+++.+++....+..+.+.+..+...+-.+...|+
T Consensus       160 ~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq  206 (216)
T KOG1962|consen  160 LEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ  206 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444444444443333333

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=81.01  E-value=33  Score=31.85  Aligned_cols=19  Identities=32%  Similarity=0.517  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 008764          295 LEEKIEKMEAEKAELEMAL  313 (554)
Q Consensus       295 Le~ele~le~eleele~el  313 (554)
                      +..++..+..+...+..++
T Consensus        84 L~~el~~l~~~~k~l~~eL  102 (169)
T PF07106_consen   84 LREELAELKKEVKSLEAEL  102 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK02119 hypothetical protein; Provisional

Probab=80.88  E-value=11  Score=30.16  Aligned_cols=51  Identities=6%  Similarity=0.042  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 008764           49 LLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMAC   99 (554)
Q Consensus        49 l~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~   99 (554)
                      +..+...+..++..+.+.+.+++.++.-..+.++.|++|..+++.|+.-+.
T Consensus         4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~   54 (73)
T PRK02119          4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK   54 (73)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667788888888899999999999999999999999999888865443

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=80.73  E-value=8.2  Score=30.37  Aligned_cols=50  Identities=14%  Similarity=0.194  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 008764           52 QSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRA  101 (554)
Q Consensus        52 l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~k~  101 (554)
                      +...+..++..+.+.+.+++.++.-..+.+++|++|+.+++.|+.-++..
T Consensus         2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~   51 (69)
T PF04102_consen    2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL   51 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45677778888888999999999999999999999999999888655543

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=80.69  E-value=27  Score=27.81  Aligned_cols=31  Identities=19%  Similarity=0.312  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          237 AELEQKLERMDAEKVDLEEKLDKMDAEKAEL  267 (554)
Q Consensus       237 ~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l  267 (554)
                      ..|+.++..+-..|..|+.++..+..+...+
T Consensus         7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L   37 (72)
T PF06005_consen    7 EQLEEKIQQAVETIALLQMENEELKEKNNEL   37 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            3444444444444444444444444443333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=80.32  E-value=64  Score=31.90  Aligned_cols=11  Identities=27%  Similarity=0.307  Sum_probs=5.3

Q ss_pred             HHHHHHHHhhc
Q 008764          439 SLGKQLKSLAT  449 (554)
Q Consensus       439 ~L~~ql~~L~~  449 (554)
                      .++..+.++..
T Consensus       262 alesklascrn  272 (333)
T KOG1853|consen  262 ALESKLASCRN  272 (333)
T ss_pred             hhHHHHHHHhh
Confidence            34555555543

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=80.02  E-value=41  Score=29.51  Aligned_cols=28  Identities=29%  Similarity=0.467  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          230 EAMIHRTAELEQKLERMDAEKVDLEEKL  257 (554)
Q Consensus       230 ~~l~~el~eLe~~l~~le~ei~eLe~~l  257 (554)
                      ++.-.+...+..++..+..+...++..+
T Consensus         9 q~~l~q~QqLq~ql~~~~~qk~~le~qL   36 (119)
T COG1382           9 QAQLAQLQQLQQQLQKVILQKQQLEAQL   36 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444443333333333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	554
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-23
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-22
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-20
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-18
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-20
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-16
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-16
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-16
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-06
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	1e-11
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	8e-08
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-09
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	1e-08
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	2e-08
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	8e-07
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-04
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	3e-06
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	4e-06
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	4e-06
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	1e-05
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	2e-05
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	4e-05
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	7e-05
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	2e-05
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	3e-05
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	7e-05
3p8q_A	385	GP5, head protein; virus procapsid particles, viru	1e-04
1gax_A	862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	2e-04
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	3e-04
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	3e-04
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	3e-04
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	4e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	7e-04
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	8e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  102 bits (256), Expect = 6e-23
 Identities = 40/234 (17%), Positives = 111/234 (47%), Gaps = 2/234 (0%)

Query: 221  AESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAE 280
             +  ++ ++  +  +  E E   +++  EKV  + K+ KM+ +   +E++  ++  E+  
Sbjct: 949  EKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKL 1008

Query: 281  LEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRE 340
            LEE++  +    A+ EEK + +   K + E  +++ +  ++  E   +E      +L+ E
Sbjct: 1009 LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068

Query: 341  LNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRM 400
             + ++E    +++ ++ ++ +      ++ +    +E E +       K ++LE     +
Sbjct: 1069 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL 1128

Query: 401  KQEVELQQIAKSNAEVKIK--QEDLEVAAGKLAECQKTIQSLGKQLKSLATLED 452
            ++++E ++ A++ AE + +   E+LE    +L +   T  +  +   S    +D
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 99.1 bits (247), Expect = 7e-22
 Identities = 52/227 (22%), Positives = 115/227 (50%), Gaps = 2/227 (0%)

Query: 225  LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEK 284
            L+ +L+A     AE E+   R+ A+K +LEE L +M+A   E EE+ +Q+ AEK +++++
Sbjct: 897  LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956

Query: 285  LEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLV 344
            +  ++ +  + E   +K++ EK   +  + K +D +   E Q  + T + + L+  ++ +
Sbjct: 957  MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDL 1016

Query: 345  NESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEV 404
              +    E    ++        + I+ LE  ++ E     ++    +KLE E   + +++
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQI 1076

Query: 405  E--LQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLAT 449
                 QIA+  A++  K+E+L+ A  +L +      +  K+++ L +
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELES 1123

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 93.0 bits (231), Expect = 7e-20
 Identities = 51/234 (21%), Positives = 113/234 (48%), Gaps = 16/234 (6%)

Query: 225  LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEK 284
            + A +E    R+ +L+ + ++M  + +DLEE+L++ +A + +L+ +    D +  ++E+ 
Sbjct: 932  MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991

Query: 285  LEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLV 344
            +  M+ +  KL ++ + +E   ++L   LA+ ++  +       +    + EL+  L   
Sbjct: 992  ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE 1051

Query: 345  NESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEV 404
             +S++ +E     +E E+  +  +I  L+ ++   +A       +  K EEE       +
Sbjct: 1052 EKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA-------QLAKKEEELQAALARL 1104

Query: 405  ELQQIAKSNAEVKIK---------QEDLEVAAGKLAECQKTIQSLGKQLKSLAT 449
            E +   K+NA  KI+         QEDLE       + +K  + L ++L++L T
Sbjct: 1105 EDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKT 1158

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 86.8 bits (215), Expect = 7e-18
 Identities = 59/244 (24%), Positives = 107/244 (43%), Gaps = 16/244 (6%)

Query: 220  LAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKA 279
            L  +    E++A        +++ ++ +AE  +LE+K  ++  EK  L+EKL+      A
Sbjct: 850  LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909

Query: 280  ELEEKLEKMDAEKAKLEE-------KIEKMEAEKAELEMALAKSQDSVEASELQLREATM 332
            E EE   ++ A+K +LEE       +IE+ E    +L+    K Q  +   E QL E   
Sbjct: 910  EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969

Query: 333  QLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQK 392
              ++LQ E    +   + +E ++  ME +   +T +   LEE V        +   K + 
Sbjct: 970  ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN 1029

Query: 393  LEEEQWRMKQEVE-----LQQIAKSNAEVKIKQEDLE----VAAGKLAECQKTIQSLGKQ 443
            L + + + +  +      L++  KS  E++  +  LE        ++AE Q  I  L  Q
Sbjct: 1030 LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQ 1089

Query: 444  LKSL 447
            L   
Sbjct: 1090 LAKK 1093

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 80.3 bits (198), Expect = 7e-16
 Identities = 50/220 (22%), Positives = 107/220 (48%), Gaps = 8/220 (3%)

Query: 233  IHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEK 292
            + +    E++++  D E    +E+  K +AE  ELE+K  Q+  EK  L+EKL+      
Sbjct: 849  LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908

Query: 293  AKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVE 352
            A+ EE   ++ A+K ELE  L + +  +E  E + ++   + +++Q+++  + E     E
Sbjct: 909  AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968

Query: 353  SNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVE-----LQ 407
            +    +++E  T   KI  +E+++ +    + ++T + + LEE    +   +       +
Sbjct: 969  AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028

Query: 408  QIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL 447
             + K   + +    +LE    +L + +K+ Q L K  + L
Sbjct: 1029 NLTKLKNKHESMISELE---VRLKKEEKSRQELEKIKRKL 1065

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 65.6 bits (160), Expect = 3e-11
 Identities = 49/306 (16%), Positives = 113/306 (36%), Gaps = 34/306 (11%)

Query: 39   EKENSALKMELL--IQSEELEIRAIERDLSNQ-AAETASKQHLDSIKKVAKLEAECRRLK 95
            E E  A   E+   + +++ E+  I  ++  +   E    Q L + KK  K++ +   L+
Sbjct: 904  ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKK--KMQQQMLDLE 961

Query: 96   AM-----ACRASSTNDHKSAAASSNCAESLVDSQSDSWERLNAVEMDIRKMGGTEPNMSE 150
                   A R     +  +A       E  +    D   +L      + +          
Sbjct: 962  EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER--------- 1012

Query: 151  PSCSDSWASALIAELDQFKNEKAVNRNLSASSPEIDLMDDFLEMEQLAAMPNNKSGKHVE 210
                    + L  E ++ KN   +     +    I  ++  L+ E+ +     K  + +E
Sbjct: 1013 ---VSDLTTNLAEEEEKAKNLTKLKNKHES---MISELEVRLKKEEKSRQELEKIKRKLE 1066

Query: 211  SGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEK 270
              +         S L  ++  +  + AEL+ +L + + E      +L+   ++K    +K
Sbjct: 1067 GES---------SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117

Query: 271  LEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREA 330
            + ++++  ++L+E LE   A + K E++   +  E   L+  L  + D+    +      
Sbjct: 1118 IRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSD 1177

Query: 331  TMQLEE 336
                ++
Sbjct: 1178 YKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 38/305 (12%), Positives = 96/305 (31%), Gaps = 50/305 (16%)

Query: 2    KLEFESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALK-----MELLIQSEEL 56
            K E E  L E++++ E  +          L  + + ++++   L+      E   Q  +L
Sbjct: 922  KQELEEILHEMEARIEEEEERSQ-----QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQL 976

Query: 57   EIRAIERDLSNQAAETAS--KQHLDSIKKVAKLEAECRRLKAMACRASSTNDHKSAAASS 114
            E    +  +     +      Q+    K+   LE     L            + +   + 
Sbjct: 977  EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036

Query: 115  NCAESLVDSQSDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWASALIAELDQFKNEKA- 173
               ES++       ++      ++ K              +  +S L  ++ + + + A 
Sbjct: 1037 --HESMISELEVRLKKEEKSRQELEK---------IKRKLEGESSDLHEQIAELQAQIAE 1085

Query: 174  VNRNLSASSPEIDLMDDFLEMEQLAAMPNNKSGKHVESGNVTTQSTLAESSLRAELEAMI 233
            +   L+    E+      LE E                           ++   ++  + 
Sbjct: 1086 LKAQLAKKEEELQAALARLEDETSQK-----------------------NNALKKIRELE 1122

Query: 234  HRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKA 293
               ++L++ LE   A +   E++   +     ELE    +++        + E   ++  
Sbjct: 1123 SHISDLQEDLESEKAARNKAEKQKRDL---SEELEALKTELEDTLDTTATQQELRGSDYK 1179

Query: 294  KLEEK 298
              ++K
Sbjct: 1180 DDDDK 1184

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 93.6 bits (233), Expect = 4e-20
 Identities = 38/209 (18%), Positives = 84/209 (40%), Gaps = 11/209 (5%)

Query: 217  QSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKL-EQMD 275
            +  LA       L+A+++      + + +        E K  K++A   E  +KL   ++
Sbjct: 875  RGWLARVHYHRTLKAIVYLQCCYRRMMAK-------RELKKLKIEARSVERYKKLHIGLE 927

Query: 276  AEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLE 335
             +  +L+ K+++ + E   L EK+  +E   +     L    + +  SE + + AT ++ 
Sbjct: 928  NKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL 987

Query: 336  ELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEE 395
             LQ E+  + +     ++   ++E  A     +   L  E++ +  L      + ++L  
Sbjct: 988  SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT---EKEELNR 1044

Query: 396  EQWRMKQEVELQQIAKSNAEVKIKQEDLE 424
                  +E+      K   E K  + DL 
Sbjct: 1045 RIHDQAKEITETMEKKLVEETKQLELDLN 1073

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 82.5 bits (204), Expect = 1e-16
 Identities = 27/155 (17%), Positives = 64/155 (41%), Gaps = 2/155 (1%)

Query: 225  LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEK 284
            L  ++  +  +  E  ++ + +  +  +LE        +     E+L   + E      +
Sbjct: 926  LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR 985

Query: 285  LEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELN-- 342
            +  +  E AKL +++ + + EK  +E    K +   E    +L+E    L+  + ELN  
Sbjct: 986  VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045

Query: 343  LVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVE 377
            + +++K I E+    +  E + +   +N      +
Sbjct: 1046 IHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 40/225 (17%), Positives = 94/225 (41%), Gaps = 5/225 (2%)

Query: 228  ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEK 287
             L+A++       +    +   K  + +K  +    +      L+ +   +      + K
Sbjct: 844  ALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAK 903

Query: 288  MDAEKAKLEEK-IEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNE 346
             + +K K+E + +E+ +     LE  + + Q  ++    + +    ++  L+   +   E
Sbjct: 904  RELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963

Query: 347  SKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVE- 405
              R     +   E EA+  T ++ SL+EE+   R    Q   + + +EE   + K E E 
Sbjct: 964  KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQ 1023

Query: 406  -LQQIAKSNAEVKIKQEDLEV-AAGKLAECQKTI-QSLGKQLKSL 447
             + ++ + N  +K ++E+L      +  E  +T+ + L ++ K L
Sbjct: 1024 LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 32/198 (16%), Positives = 76/198 (38%), Gaps = 16/198 (8%)

Query: 214  VTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEK-------LDKMDAEKAE 266
            V  Q        + EL+ +        + +ER     + LE K       +D+ + E   
Sbjct: 891  VYLQCCYRRMMAKRELKKL----KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS 946

Query: 267  LEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQ 326
            L EK+  ++   +   EKL          EE+ +        L+  +AK +  +  ++ +
Sbjct: 947  LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006

Query: 327  LREATMQLEELQRELN-LVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQ 385
             +      ++ + E   LV+E    ++   + ++ E + +  +I+   +E+       + 
Sbjct: 1007 KKTIEEWADKYKHETEQLVSE----LKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV 1062

Query: 386  ITVKCQKLEEEQWRMKQE 403
               K  +L+    R++ +
Sbjct: 1063 EETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 70.1 bits (172), Expect = 1e-12
 Identities = 36/221 (16%), Positives = 88/221 (39%), Gaps = 15/221 (6%)

Query: 226  RAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKL 285
            R   + M   T  L+  L              +     K+ + +K  +    +      L
Sbjct: 832  RKRYQCMRDATIALQALLRGYLVRNKYQMMLREH----KSIIIQKHVRGWLARVHYHRTL 887

Query: 286  EKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVN 345
            + +   +      + K E +K ++E   A+S +  +   + L     ++ +LQR+++  N
Sbjct: 888  KAIVYLQCCYRRMMAKRELKKLKIE---ARSVERYKKLHIGLEN---KIMQLQRKIDEQN 941

Query: 346  ESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVE 405
            +  + +   ++++E+   T T K+ S  E + M    +   T +   L+EE  ++++E  
Sbjct: 942  KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE-- 999

Query: 406  LQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKS 446
               + ++  E K  +E  +    +  +    ++     LK+
Sbjct: 1000 ---LHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 29/224 (12%), Positives = 69/224 (30%), Gaps = 21/224 (9%)

Query: 234  HRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKA 293
             R A + QK +RM      + ++   M      L+  L              E       
Sbjct: 816  TRAAIIIQKFQRM----YVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHK---SI 868

Query: 294  KLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVES 353
             +++ +    A         A          +  +    +L+   R +    +       
Sbjct: 869  IIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLH----- 923

Query: 354  NVSSMEMEAQTMTAKINSLEEE----VEMERALSMQITVKCQKLEEEQWRMKQEVELQQI 409
                +E +   +  KI+   +E    +E    L +  + + +KL  +  R++     ++ 
Sbjct: 924  --IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM--SEEEA 979

Query: 410  AKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL-ATLED 452
              +   V   QE++     +L + Q   +++ +         E 
Sbjct: 980  KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQ 1023

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.8 bits (114), Expect = 9e-06
 Identities = 17/121 (14%), Positives = 50/121 (41%), Gaps = 2/121 (1%)

Query: 193  EMEQLAAMPNNKSGKHVESGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVD 252
            E E+L +          E+ N T +    +  +    + +     E +   E  D  K +
Sbjct: 961  ETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020

Query: 253  LEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMA 312
             E+ + ++  +   L+ + E+++    +  +++   +  + KL E+ +++E +  +  + 
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT--ETMEKKLVEETKQLELDLNDERLR 1078

Query: 313  L 313
             
Sbjct: 1079 Y 1079

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 67.2 bits (164), Expect = 1e-11
 Identities = 45/263 (17%), Positives = 106/263 (40%), Gaps = 25/263 (9%)

Query: 226  RAELEAMIHRTAELEQKLERMDAE----KVDLEEKLDKMDAEKAELEEKLEQMDAEKAEL 281
            R +LE          +KL   +A+    +V L +K  ++D +  +  +KL+QM  ++   
Sbjct: 1912 RDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAA 1971

Query: 282  EEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQREL 341
            E K +     + +L+ + +++  +K +    L K++ +    E ++ +      EL+ + 
Sbjct: 1972 EIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLRE-EVEQLENAANELKLKQ 2030

Query: 342  NLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMK 401
            + +  +   +E ++++ + E  T+  +   ++ E    +    +       L  E+ R +
Sbjct: 2031 DEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWE 2090

Query: 402  QEVELQQIAKSNAEVKIKQEDLEVAAGKLA---------------ECQKTIQSLGKQLKS 446
            Q+ E      S         D+ +A+  LA               +    + S+G + KS
Sbjct: 2091 QQSENFNTQMSTVV-----GDVVLASAFLAYIGFFDQNFRTDLMRKWMIRLDSVGIKFKS 2145

Query: 447  LATLEDFLIDTASIPEFSRAALP 469
              ++  FL        +   +LP
Sbjct: 2146 DLSVPSFLSKPEERLNWHANSLP 2168

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 54.5 bits (131), Expect = 8e-08
 Identities = 19/195 (9%), Positives = 70/195 (35%), Gaps = 23/195 (11%)

Query: 255  EKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALA 314
              LD ++     + EK +Q++ E+  L   L+K+       E +++ ++   A+    L 
Sbjct: 1896 HYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDT----EAQVKDLQVSLAQKNRELD 1951

Query: 315  KSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEE 374
               +              +L+++ ++       ++        ++++      +I   + 
Sbjct: 1952 VKNEQANQ----------KLKQMVQDQQAAEIKQKDAR----ELQVQLDVRNKEIAVQKV 1997

Query: 375  EVEMERALSMQITVKCQKLEE-----EQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGK 429
            +   +   +       +++E+      + ++KQ+  +  I      +   +E+      +
Sbjct: 1998 KAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRE 2057

Query: 430  LAECQKTIQSLGKQL 444
              + +     +  ++
Sbjct: 2058 TEQIKTESSKVKNKV 2072

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 17/184 (9%), Positives = 53/184 (28%), Gaps = 7/184 (3%)

Query: 214 VTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQ 273
              ++       +  L       A        +D+    LE+   +         ++ ++
Sbjct: 816 SELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKK 875

Query: 274 MDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEK--AELEMALAKSQDSVEASELQLREAT 331
           +     +    L+K++         +   E       ++  L   +      +    ++ 
Sbjct: 876 IAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSN 935

Query: 332 MQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQ 391
             L  +  +L  +N +           E +      +   ++   E  +   +    + Q
Sbjct: 936 SDLLSILAQLTELNYNG-----VPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQ 990

Query: 392 KLEE 395
           K+E+
Sbjct: 991 KIED 994

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 25/191 (13%), Positives = 64/191 (33%), Gaps = 13/191 (6%)

Query: 217  QSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDA 276
            ++       +  L       A        +D+    LE+   +  AE   +E K ++   
Sbjct: 827  EAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEH-AEALRIELKRQK--- 882

Query: 277  EKAELEEKLEKM-DAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLE 335
            + A L +K  ++    +     K   + + +    +   +++       L+  +   Q  
Sbjct: 883  KIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAK----LKNLEAFDGECQSL 938

Query: 336  ELQRELNLVNESKRIVESNVSS----MEMEAQTMTAKINSLEEEVEMERALSMQITVKCQ 391
            E Q   +L++   ++ E N +      E +      +   ++   E  +   +    + Q
Sbjct: 939  EGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQ 998

Query: 392  KLEEEQWRMKQ 402
            K+E+       
Sbjct: 999  KIEDLHHHHHH 1009

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 1/96 (1%)

Query: 215  TTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQM 274
            T  S  A  +    LEA       LE +    D   +  +      +      E K    
Sbjct: 914  TGDSITAVQAKLKNLEAFDGECQSLEGQSNS-DLLSILAQLTELNYNGVPELTERKDTFF 972

Query: 275  DAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELE 310
              +   ++   E          E+++K+E       
Sbjct: 973  AQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 2e-08
 Identities = 72/523 (13%), Positives = 157/523 (30%), Gaps = 155/523 (29%)

Query: 25  YHMDPDLFEKLEFLEKENSALKMELLIQS--EELEIRAIERDLSNQAAETASKQHLDSIK 82
           +HMD +  E     + +   + + +   +  +  + + ++ D+        SK+ +D I 
Sbjct: 5   HHMDFETGE----HQYQYKDI-LSVFEDAFVDNFDCKDVQ-DMPKSIL---SKEEIDHII 55

Query: 83  KVAKLEAECRRLKAMACRASSTNDHKSAAASSNCAESLVDS--QSD-SW--ERLNAVEMD 137
                 +   RL                       +  V+   + +  +    +      
Sbjct: 56  MSKDAVSGTLRLFWTLLS-----------KQEEMVQKFVEEVLRINYKFLMSPIK----- 99

Query: 138 IRKMGGTEPNMSEPSCSDSWASALIAELDQFKN--EKAVNRNLSASSPEIDLMDDFLEME 195
                 TE    +PS         I + D+  N  +     N+S   P + L    LE+ 
Sbjct: 100 ------TEQR--QPSMM---TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 196 Q-----LAAMPNNKSGKHVESGNVTTQSTLAESSLRAE--LEAM---IH-----RTAELE 240
                 +  +    SGK          + +A     +      M   I           E
Sbjct: 149 PAKNVLIDGVLG--SGK----------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 241 QKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQ-MDAEKAELEEKLEKMDAEKAKL---- 295
             LE +      L  ++D     +++    ++  + + +AEL   L+    E   L    
Sbjct: 197 TVLEML----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 296 ---EEKIEKME------------------AEKAELEMALAKSQDSV---EASELQLREAT 331
               +                        +      ++L     ++   E   L L+   
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 332 MQLEELQRE--------LNLVNESKRIVES------NVSSMEMEAQTMTAKINSLEEEVE 377
            + ++L RE        L+++ ES R   +      +V+  ++    + + +N LE   E
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT-TIIESSLNVLEPA-E 370

Query: 378 MER---ALSM-----QITVKC-QKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAG 428
             +    LS+      I       +    W    + ++  +              ++   
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLI----WFDVIKSDVMVVVN------------KLHKY 414

Query: 429 KLAECQK-----TI----QSLGKQLKSLATLEDFLIDTASIPE 462
            L E Q      +I      L  +L++   L   ++D  +IP+
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 4e-06
 Identities = 71/384 (18%), Positives = 119/384 (30%), Gaps = 82/384 (21%)

Query: 228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEK-----AELEEKLEQMDAEKAE-- 280
           E     ++  ++    E  DA   + + K D  D  K      E++  +   DA      
Sbjct: 10  ETGEHQYQYKDILSVFE--DAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 281 ----LEEKLEKM------DAEKAK---LEEKIEKMEAEKAELEMALAKSQ---------- 317
               L  K E+M      +  +     L   I K E  +  +   +   Q          
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 318 ---DSVEASE--LQLREATMQLEELQRELNLVNES-----KRIVESNVSSMEMEAQTMTA 367
               +V   +  L+LR+A   L EL+   N++ +      K  V  +V         M  
Sbjct: 126 FAKYNVSRLQPYLKLRQA---LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 368 KI--------NSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSN-AEVKI 418
           KI        NS E  +EM + L  QI        +    +K  +   Q       + K 
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 419 KQEDLEVAAGKLAECQ--KTIQSLGKQLKSLAT-----LEDFLIDTASIPEFSRAALPIP 471
            +  L V    L   Q  K   +     K L T     + DFL   A+    S     + 
Sbjct: 243 YENCLLV----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL-SAATTTHISLDHHSMT 297

Query: 472 KTVGESWKLPSNVTFSHKRDL------NSPGVVAGTTCPSISKNDGNT----PPSSSSST 521
            T  E   L         +DL       +P  ++        ++   T       +    
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--IIAESIRDGLATWDNWKHVNCDKL 355

Query: 522 SSAMPS--NQINPEKNRNGFAKFF 543
           ++ + S  N + P + R  F +  
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLS 379

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575

 Score = 55.7 bits (133), Expect = 2e-08
 Identities = 33/205 (16%), Positives = 74/205 (36%), Gaps = 1/205 (0%)

Query: 222 ESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAEL 281
           +   +  L  M       +  L       + LEE+L ++ A K ELE++  ++ A    L
Sbjct: 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRL 396

Query: 282 EEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQREL 341
           EE      AE+ KLE++I   + E + ++  +          + ++ +A  + +E    L
Sbjct: 397 EETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAAL 456

Query: 342 -NLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRM 400
                     V     +         A   S   ++       +      + L E   R+
Sbjct: 457 LAATTPQHHHVAERADTDPDHDNASDAGSESGGGDLARGPDDLVDPVADRRTLAERNERL 516

Query: 401 KQEVELQQIAKSNAEVKIKQEDLEV 425
             +++  +   + +  + K+  ++ 
Sbjct: 517 HNQLKALKQDLARSCDETKETAMDK 541

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 51.0 bits (121), Expect = 8e-07
 Identities = 29/200 (14%), Positives = 83/200 (41%), Gaps = 10/200 (5%)

Query: 221 AESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAE 280
               + + ++       +   +     + ++ +E   +  +A      ++LEQ    + E
Sbjct: 630 QNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLE 689

Query: 281 LEEKLEKMDAEKAKLE-EKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQR 339
            ++ L++ +AEKA+ E  ++E M         A A+++   EA+ ++  E ++   +L+ 
Sbjct: 690 RQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIE-GEGSVLQAKLKA 748

Query: 340 ELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWR 399
           +         +     + +E   +    ++     ++E+E + + Q+     K  +E   
Sbjct: 749 Q--------ALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTE 800

Query: 400 MKQEVELQQIAKSNAEVKIK 419
                 ++ +A +  E+++K
Sbjct: 801 ALGPGTIRDLAVAGPEMQVK 820

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 6/172 (3%)

Query: 221 AESSLRAELEAMIHRTAELEQ----KLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDA 276
            E +  ++  A  H    LEQ    +LER         EK  K   E   +   +E    
Sbjct: 662 IEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGN 721

Query: 277 EKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEE 336
            KAE E + E    E         K++A+   +E      +         +        E
Sbjct: 722 AKAEAESRAEAARIEGEG-SVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELE 780

Query: 337 LQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITV 388
           + +   L N   +  +    ++        A     E +V++ ++L ++ T+
Sbjct: 781 VSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGP-EMQVKLLQSLGLKSTL 831

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Length = 854

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 31/154 (20%)

Query: 221 AESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAE 280
           A + LR  LE+       LE+K  +++ E+  L+++ D     +    E+L+ ++AE A+
Sbjct: 388 AAARLRMALESAPEEIDALERKKLQLEIEREALKKEKD--PDSQ----ERLKAIEAEIAK 441

Query: 281 LEEKLEKMDA----EKAKLE------EKIE--KMEAEKAELEMALAKSQDSVEASELQ-- 326
           L E++ K+ A    E+  L        +++  + E E AE +  L +      A+EL+  
Sbjct: 442 LTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNR------AAELRYG 495

Query: 327 -LREATMQLEELQRELNLVNESKRIVESNVSSME 359
            L +   ++E L  +L       R V   V+  +
Sbjct: 496 ELPKLEAEVEALSEKL----RGARFVRLEVTEED 525

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 30/108 (27%), Positives = 58/108 (53%)

Query: 235 RTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAK 294
           ++AE E+++  M  E   L+E L+K +A + ELEEK+  +  EK +L+ +++      A 
Sbjct: 7   KSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLAD 66

Query: 295 LEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELN 342
            EE+ +++   K +LE  + +    +E  E    E T +  +L+ E +
Sbjct: 67  AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECS 114

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129

 Score = 45.3 bits (107), Expect = 4e-06
 Identities = 27/115 (23%), Positives = 58/115 (50%)

Query: 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLE 286
            E+ +M      L++ LE+ +A + +LEEK+  +  EK +L+ +++      A+ EE+ +
Sbjct: 13  KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCD 72

Query: 287 KMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQREL 341
           ++   K +LE K+++M     + E   A+        E +  E    +++L+  L
Sbjct: 73  QLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTL 127

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 30/104 (28%), Positives = 55/104 (52%)

Query: 225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEK 284
           L+  LE    R  ELE+K+  +  EK DL+ ++       A+ EE+ +Q+   K +LE K
Sbjct: 25  LKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAK 84

Query: 285 LEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLR 328
           +++M+      EE   ++ A+K +LE   ++ +  ++  EL L 
Sbjct: 85  VKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLA 128

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 16/156 (10%), Positives = 61/156 (39%), Gaps = 2/156 (1%)

Query: 228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEK 287
           E+  +      LE  +     +        +  +     LEE+   +  + ++ E+ L+ 
Sbjct: 12  EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71

Query: 288 MDAEKAKLEEKIEKMEAEK--AELEMALAKSQDSVEASELQLREATMQLEELQRELNLVN 345
            +A+ A +++K+ ++++E+    L +    +++    +  ++     +++    +   + 
Sbjct: 72  TNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLK 131

Query: 346 ESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERA 381
           +    +E     +E   +     I   ++ +  ++ 
Sbjct: 132 KEMLELEKLALELESLVENEVKNIKETQQIIFKKKE 167

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 21/159 (13%), Positives = 62/159 (38%), Gaps = 2/159 (1%)

Query: 249 EKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAE 308
             +    ++  +D E   LE  + +   +  +     E  +     LEE+   ++ + ++
Sbjct: 5   THLKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSK 64

Query: 309 LEMALAKSQDSVEASELQLREAT--MQLEELQRELNLVNESKRIVESNVSSMEMEAQTMT 366
            E  L  +   + + + ++ E     +L  L  E ++  E        + +++ E +  +
Sbjct: 65  NEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKS 124

Query: 367 AKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVE 405
            K   L++E+     L++++    +   +     +Q + 
Sbjct: 125 EKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIF 163

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 43.6 bits (102), Expect = 7e-05
 Identities = 20/164 (12%), Positives = 66/164 (40%), Gaps = 5/164 (3%)

Query: 242 KLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEK 301
           ++  +D E   LE  + +   +  +     E  +     LEE+   +  + +K E+ ++ 
Sbjct: 12  EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71

Query: 302 MEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEME 361
             A+ A ++  +++ +   E   L      ++ +  +   N  N     +++ +     +
Sbjct: 72  TNAKIASIQKKMSEIKSERELRSLN-----IEEDIAKERSNQANREIENLQNEIKRKSEK 126

Query: 362 AQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVE 405
            + +  ++  LE+      +L        ++ ++  ++ K+++ 
Sbjct: 127 QEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLV 170

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 8/167 (4%)

Query: 208 HVESGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAEL 267
            VE+G     + L    +R  ++ +   T  +  +  R           +D    +    
Sbjct: 254 EVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNKGQLT 313

Query: 268 EEKLEQMDAEKAELEEKLEKMDAEK-----AKLEEKIEKMEAEKAELEMALAKSQDSVEA 322
           +  L QM+ E+ E   K++KM+ E       K++EK++K++  +AEL+    + + ++EA
Sbjct: 314 KSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEA 373

Query: 323 SELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKI 369
              +L E   Q E+ +         +RI+E   SS  +E      KI
Sbjct: 374 QHKELEEKRRQFEDEKANW---EAQQRILEQQNSSRTLEKNKKKGKI 417

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Length = 409

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 18/127 (14%), Positives = 46/127 (36%), Gaps = 11/127 (8%)

Query: 216 TQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMD 275
           T   +A+   +  L        E+E  L++       +E  +  +               
Sbjct: 21  TTCGIADFFNKYRLT-TDGELLEIEGLLQQATNSTGSIEYLIQHI----------KTIYP 69

Query: 276 AEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLE 335
           +EK  L + +E++  +  K+ E+I + E      E  + +  D    +  ++ +   ++ 
Sbjct: 70  SEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIA 129

Query: 336 ELQRELN 342
           +L+    
Sbjct: 130 QLESHCQ 136

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 11/166 (6%)

Query: 221 AESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAE 280
            + S + E  A +    E E+  ++M     + E++L++++ E    EE L+    E + 
Sbjct: 143 LKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSN 202

Query: 281 LEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRE 340
           LE++ EK+      L++          +  +            E  +      L E   E
Sbjct: 203 LEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLR-----------EKYVPLIQKYLNEAFSE 251

Query: 341 LNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQI 386
            +L      + +     +      +T    S  E++ +  +L + I
Sbjct: 252 FDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAI 297

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 12/71 (16%)

Query: 251 VDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKL-----------EKMDAEKAKLEEKI 299
           + LE  LD ++  +   E++L+++ A     + KL           E ++AE+A+L+E +
Sbjct: 790 MPLEGLLD-VEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENL 848

Query: 300 EKMEAEKAELE 310
           E+ E  +  L 
Sbjct: 849 EQAERIREALS 859

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Length = 96

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 24/89 (26%), Positives = 54/89 (60%)

Query: 252 DLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEM 311
            L+ +L ++  E+  L ++LE ++  +  + E LEK+ AE  +L+++  + + E +E + 
Sbjct: 8   QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKR 67

Query: 312 ALAKSQDSVEASELQLREATMQLEELQRE 340
              +  D +++ E Q+R A MQL++L+++
Sbjct: 68  QQLELDDELKSVENQMRYAQMQLDKLKKK 96

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 28/146 (19%), Positives = 67/146 (45%)

Query: 235 RTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAK 294
           R  +LE K+E + ++   LE ++ ++       EE+ E  + + AELEE+L+ +      
Sbjct: 1   RMKQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKS 60

Query: 295 LEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESN 354
           LE + EK   ++ + E  +    D ++ +E +   A   + +L++ ++ + +     +  
Sbjct: 61  LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 120

Query: 355 VSSMEMEAQTMTAKINSLEEEVEMER 380
             ++  E + +  K+  L  +     
Sbjct: 121 YKAISEEMKQLEDKVEELLSKNYHLE 146

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 31/150 (20%), Positives = 71/150 (47%)

Query: 225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEK 284
           L  ++E ++ +   LE ++ R+       EE+ +  + + AELEE+L+ +      LE +
Sbjct: 5   LEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQ 64

Query: 285 LEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLV 344
            EK   ++ K EE+I+ +  +  E E     ++ SV   E  + +   +L   + +   +
Sbjct: 65  AEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAI 124

Query: 345 NESKRIVESNVSSMEMEAQTMTAKINSLEE 374
           +E  + +E  V  +  +   +  ++  L++
Sbjct: 125 SEEMKQLEDKVEELLSKNYHLENEVARLKK 154

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Length = 101

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 23/91 (25%), Positives = 50/91 (54%)

Query: 256 KLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAK 315
           K+  +  +K    ++ EQ +A+K   EE+ ++++ +  +LE+++   E  + ++   L K
Sbjct: 10  KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHK 69

Query: 316 SQDSVEASELQLREATMQLEELQRELNLVNE 346
           S+DS+  +E    +A  ++  L R + LV E
Sbjct: 70  SEDSLLFAEENAAKAESEVASLNRRIQLVEE 100

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 12/81 (14%)

Query: 244 ERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAE----KAELEEKLEK-MDAEKAKLEEK 298
           +R+  E     E + K    + E  ++L+++DA     + E  EK +K ++    +  E+
Sbjct: 78  DRLTQE----PESIRK---WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130

Query: 299 IEKMEAEKAELEMALAKSQDS 319
           +EK +      + A  +  D+
Sbjct: 131 VEKNKINNRIADKAFYQQPDA 151

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.1 bits (93), Expect = 7e-04
 Identities = 17/83 (20%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 262 AEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVE 321
           A+   L ++ E +   + E  ++L+++DA    +E++  + +A+K +LE    +  + VE
Sbjct: 75  AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWRE-KAKK-DLEEWNQRQSEQVE 132

Query: 322 ASELQLREATMQLEELQRELNLV 344
            +++  R A     + Q + +++
Sbjct: 133 KNKINNRIADKAFYQ-QPDADII 154

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 193 EMEQLAAMPNNKSGKHVESGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVD 252
           ++EQ+AA    +  +  E  + + Q       L+ ++E +     E  +   R+  E   
Sbjct: 153 DVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKT 212

Query: 253 LEEKLDKMDAEKA---ELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAEL 309
            +    ++  +       +E   + +     +  + E++ AE+ K+  +  K++ ++ EL
Sbjct: 213 YKSPGLEVLFQGPRGSRYDEAEGRFE----VINNETEQLKAEEKKILNQFLKIKKKRKEL 268

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	554
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.95
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.94
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.46
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.31
3l51_B	166	Structural maintenance of chromosomes protein 4; s	98.23
3l51_A	161	Structural maintenance of chromosomes protein 2; s	98.21
3nwc_A	189	SMC protein; structural maintenance of chromosomes	98.15
1gxl_A	213	SMC, chromosome segregation SMC protein; SMC dimer	98.07
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	98.0
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.85
2wd5_B	213	Structural maintenance of chromosomes protein 3; D	97.77
2wd5_A	233	Structural maintenance of chromosomes protein 1A;	97.75
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.72
1gxj_A	186	SMC, chromosome segregation SMC protein; SMC dimer	97.64
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	97.58
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.57
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	97.48
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.19
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.98
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	96.9
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.77
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.69
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	96.51
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	96.43
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	96.06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.56
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	95.37
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	94.19
3bas_A	89	Myosin heavy chain, striated muscle/general contro	93.86
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	93.8
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	92.93
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	92.75
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	92.64
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	92.33
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	91.85
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	91.29
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	91.03
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	90.91
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	90.9
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	90.26
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	89.74
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	88.24
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	84.93
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	84.86
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	83.87
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	82.31
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	80.66

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.95  E-value=9.6e-06  Score=79.23  Aligned_cols=25  Identities=16%  Similarity=0.304  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          422 DLEVAAGKLAECQKTIQSLGKQLKS  446 (554)
Q Consensus       422 el~~a~~kl~e~q~tI~~L~~ql~~  446 (554)
                      .+..+...+..+...+..+...+..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~  255 (284)
T 1c1g_A          231 KLKEAETRAEFAERSVTKLEKSIDD  255 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444433

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.94  E-value=1.1e-05  Score=78.81  Aligned_cols=24  Identities=17%  Similarity=0.241  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          227 AELEAMIHRTAELEQKLERMDAEK  250 (554)
Q Consensus       227 ~ei~~l~~el~eLe~~l~~le~ei  250 (554)
                      .++..+...+..+...+..+...+
T Consensus        13 ~~~~~~~~~~~~l~~~l~~l~~~~   36 (284)
T 1c1g_A           13 LDKENALDRADEAEADKKAAEDRS   36 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444433333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.46  E-value=4.3e-07  Score=108.00  Aligned_cols=113  Identities=29%  Similarity=0.300  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEK  306 (554)
Q Consensus       227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~el  306 (554)
                      .++..+..++..++..+..++..+.+++.++..+..++..+...+......+..++..+..+..++..++..+..++.++
T Consensus       857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~el  936 (1184)
T 1i84_S          857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI  936 (1184)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666666666666666666666666666666555555554444444444444444444445544444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          307 AELEMALAKSQDSVEASELQLREATMQLEELQR  339 (554)
Q Consensus       307 eele~el~~l~~el~~~e~~i~ele~ele~l~~  339 (554)
                      .+++..+..+...+..++..+..++..+++++.
T Consensus       937 ee~ee~l~el~~e~~~le~el~~L~~eleele~  969 (1184)
T 1i84_S          937 EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA  969 (1184)
T ss_dssp             HHHHHC---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444433333333333333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.31  E-value=2e-06  Score=102.32  Aligned_cols=39  Identities=18%  Similarity=0.304  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAE  263 (554)
Q Consensus       225 l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e  263 (554)
                      +..++..++..+..++..+..++.++..++.++..+...
T Consensus       862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~  900 (1184)
T 1i84_S          862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK  900 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555544444444444444333

>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0

Probab=98.23  E-value=1.7e-07  Score=86.47  Aligned_cols=58  Identities=12%  Similarity=0.195  Sum_probs=50.0

Q ss_pred             hhhHHHhhhhhh-hhccc--cccCCCceeccCchh--hc----chhhhhhhceeeecCCCCCc-cccCCcccCCCc
Q 008764          154 SDSWASALIAEL-DQFKN--EKAVNRNLSASSPEI--DL----MDDFLEMEQLAAMPNNKSGK-HVESGNVTTQST  219 (554)
Q Consensus       154 ~~~~a~~li~~~-~~~~~--~~~~g~~~v~~~~~~--~l----~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~~  219 (554)
                      ...||.++|.|+ +.|++  .++||+++||++++.  .+    ...+    |+||+    +|+ +.++|+||||+-
T Consensus        93 ~~~~a~dlv~~~d~~~~~a~~~llg~tlVv~dl~~A~~~~~~~~~~~----r~VTl----dGdli~~~G~~tGG~~  160 (166)
T 3l51_B           93 NTPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQRDRRW----RVVTL----QGQIIEQSGTMSGGLE  160 (166)
T ss_dssp             GCCBHHHHCBCSCHHHHHHHHHHHTTCEEESSHHHHHHHHBCSSCBC----CEEET----TSCEECTTCCEEECCG
T ss_pred             chhhHhheeeCCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhhCCCc----EEEEC----CCEEEeCCEEEECCCc
Confidence            346999999995 69998  999999999999998  33    2346    89999    999 999999999985

>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}

Probab=98.21  E-value=1.9e-07  Score=85.58  Aligned_cols=59  Identities=12%  Similarity=0.107  Sum_probs=43.2

Q ss_pred             hhHHHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCC
Q 008764          155 DSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQ  217 (554)
Q Consensus       155 ~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG  217 (554)
                      ..||.++|.|++.|++  .++||+++||++++.  .+....-..-|+||+    +|+ ++++|+||||
T Consensus        98 ~~~a~dlv~~d~~~~~a~~~llg~tlv~~dl~~A~~~~~~~~~~~r~VTl----dGd~i~~~G~~tGG  161 (161)
T 3l51_A           98 VHVALSLVDYKPELQKGMEFVFGTTFVCNNMDNAKKVAFDKRIMTRTVTL----GGDVFDPHGTLSGG  161 (161)
T ss_dssp             EEEGGGGEECCGGGHHHHHHHHTTCEEESSHHHHHHHHHCTTTCCCEEET----TSCEECCC------
T ss_pred             hhHHHHHhcCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCCeEEeC----CCeEEcCCEEEecC
Confidence            5699999999999998  899999999999998  443221011289999    999 9999999998

>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}

Probab=98.15  E-value=5.5e-07  Score=84.64  Aligned_cols=55  Identities=18%  Similarity=0.201  Sum_probs=49.6

Q ss_pred             HHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCCCcc
Q 008764          158 ASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQSTL  220 (554)
Q Consensus       158 a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~~~  220 (554)
                      |.++|.|++.|.+  .++||+++||++++.  .+...+    |+||+    +|+ +.++|+||||+..
T Consensus       110 a~dlv~~d~~~~~a~~~llg~tlvv~dl~~A~~l~~~~----r~VTl----dGd~i~~~G~~tGG~~~  169 (189)
T 3nwc_A          110 AVDVIEYDQKIENAVKFALGDTVIVNSMEEARPHIGKV----RMVTI----EGELYERSGAITGGHFR  169 (189)
T ss_dssp             GGGGEECCGGGHHHHHHHHTTEEEESCSGGGGGGTTTS----EEEET----TSCEECTTSCEECSCSS
T ss_pred             EeeeeccCHHHHHHHHHHhCCEEEECCHHHHHHHhCCC----eEEeC----CCcEEECCEEEEeCCCC
Confidence            8899999999998  899999999999998  554555    99999    999 9999999999864

>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1

Probab=98.07  E-value=9.3e-07  Score=84.42  Aligned_cols=84  Identities=12%  Similarity=0.107  Sum_probs=58.3

Q ss_pred             chhhHHHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCCCcch---hhh
Q 008764          153 CSDSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQSTLA---ESS  224 (554)
Q Consensus       153 ~~~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~~~~---~~~  224 (554)
                      ++.+|+.++|.+++.|.+  .++||++++|++++.  .++....-..|+||+    +|+ +.++|.|+||+...   ...
T Consensus       119 g~~~~~~d~v~~~~~~~~~~~~~lg~~~vv~~l~~A~~~~~~~~~~~~~VT~----~G~~~~~~G~~~gg~~~~~~~~l~  194 (213)
T 1gxl_A          119 GFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATL----DGELISGRGAITGGREERSSNVFE  194 (213)
T ss_dssp             TEEEEGGGGCBCCSTTHHHHHHHSSSEEEESSHHHHHHHHHHTCSSCEEECT----TSCEECTTSCEEECCCSSCCCTTH
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHHhCCEEEECCHHHHHHHHHhcCCCceEEec----CCeEEcCCceEECCCCccccchhh
Confidence            344689999999999988  899999999999988  443221111288999    999 99999999997531   122


Q ss_pred             HHHHHHHHHHHHHHHH
Q 008764          225 LRAELEAMIHRTAELE  240 (554)
Q Consensus       225 l~~ei~~l~~el~eLe  240 (554)
                      ...+|++++.++..++
T Consensus       195 ~~~el~~l~~~l~~~~  210 (213)
T 1gxl_A          195 RRIKLKHLEQEMEETE  210 (213)
T ss_dssp             HHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3455555555555444

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=98.00  E-value=0.0035  Score=61.48  Aligned_cols=48  Identities=8%  Similarity=0.116  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          330 ATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVE  377 (554)
Q Consensus       330 le~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~  377 (554)
                      +..+++.++..+..++..+..+..++..++..+..+...+..++.++.
T Consensus        95 L~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~  142 (256)
T 3na7_A           95 LNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL  142 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333344444444443333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.85  E-value=0.0051  Score=60.30  Aligned_cols=8  Identities=25%  Similarity=0.347  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 008764          336 ELQRELNL  343 (554)
Q Consensus       336 ~l~~el~~  343 (554)
                      .+..+++.
T Consensus        94 aL~kEie~  101 (256)
T 3na7_A           94 SLNIEEDI  101 (256)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}

Probab=97.77  E-value=4.9e-06  Score=79.62  Aligned_cols=58  Identities=16%  Similarity=0.157  Sum_probs=47.7

Q ss_pred             HHHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCCCcc
Q 008764          157 WASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQSTL  220 (554)
Q Consensus       157 ~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~~~  220 (554)
                      ++.++|.|++.|.+  .++||+++||++++.  .++..+  ..++||+    +|+ +.++|.|+||+..
T Consensus       125 ~l~~~v~~~~~~~~~~~~~l~~~~vv~~l~~A~~l~~~~--~~~~VTl----dG~~~~~~G~~tgG~~~  187 (213)
T 2wd5_B          125 PMISKLRYNPRFDKAFKHVFGKTLICRSMEVSTQLARAF--TMDCITL----EGDQVSHRGALTGGYYD  187 (213)
T ss_dssp             EGGGGCEECGGGHHHHHHHHTTEEEESSHHHHHHHHHHS--SCEEECT----TCCEECTTSCEEECCCC
T ss_pred             eHHHHccCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhc--CceEEeC----CCcEECCCeEEECCCCC
Confidence            35688999999988  899999999999988  444332  2388999    999 9999999999854

>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}

Probab=97.75  E-value=2.1e-06  Score=83.53  Aligned_cols=84  Identities=13%  Similarity=0.123  Sum_probs=55.2

Q ss_pred             hHHHhhhhh-hhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCCCcch----hhhH
Q 008764          156 SWASALIAE-LDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQSTLA----ESSL  225 (554)
Q Consensus       156 ~~a~~li~~-~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~~~~----~~~l  225 (554)
                      .|+.++|.+ ++.|.+  .++||+++||++++.  .++...-...|+||+    +|+ +.++|+||||+...    ..|.
T Consensus       132 ~~l~dlV~~~~~~~~~~~~~~Lg~~~vv~dl~~A~~l~~~~~~~~r~VTl----dG~~~~~~G~~tGG~~~~~~~~~~~~  207 (233)
T 2wd5_A          132 KLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVAL----DGTLFQKSGVISGGASDLKAKARRWD  207 (233)
T ss_dssp             EESGGGEEESSGGGHHHHHHHTTTCEEESSHHHHHHHHHSSSSCCCEEET----TCCEECTTSCEEECHHHHHHHTTHHH
T ss_pred             hHHHHhhhCCcHHHHHHHHHHhCCEEEECCHHHHHHHHHhcCCCceEEec----CCEEEeCCeeEeCCCchhhhhhhhcc
Confidence            378899999 689988  899999999999988  443211001289999    999 99999999997432    2355


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 008764          226 RAELEAMIHRTAELEQKL  243 (554)
Q Consensus       226 ~~ei~~l~~el~eLe~~l  243 (554)
                      ..+++.|..++..+..++
T Consensus       208 ~~e~~~l~~~~~~l~~~~  225 (233)
T 2wd5_A          208 EKAVDKLKEKKGRLTEEL  225 (233)
T ss_dssp             HHHTTTCC----------
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            566666666655555443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.72  E-value=0.014  Score=52.64  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008764          301 KMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLE  373 (554)
Q Consensus       301 ~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le  373 (554)
                      .++..+..++.++..++..+...+.........+.+++..+..+...+..+...+..+..+...+..++..++
T Consensus        59 ~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lE  131 (168)
T 3o0z_A           59 ILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSE  131 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444443433333333333333344444444444444444444444444444444444443

>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A

Probab=97.64  E-value=7.2e-06  Score=76.62  Aligned_cols=63  Identities=10%  Similarity=0.108  Sum_probs=50.6

Q ss_pred             chhhHHHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCCCc
Q 008764          153 CSDSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQST  219 (554)
Q Consensus       153 ~~~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~~  219 (554)
                      ++.+||.++|.|++.|.+  .++||+++||++++.  .+.....-..|+||+    +|+ +.++|.|+||+.
T Consensus       107 g~~~~~~dlv~~~~~~~~~~~~~lg~~~v~~~l~~A~~l~~~~~~~~~~VTl----dG~~~~~~G~~~gG~~  174 (186)
T 1gxj_A          107 GFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATL----DGELISGRGAITGGRE  174 (186)
T ss_dssp             TEEEEHHHHCBCCGGGHHHHHHHHTTCEEESCHHHHHHHHHHHTCCSCEEET----TSCEECTTSCEEEEEC
T ss_pred             CchHHHHHHccCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCceEEeC----CCeEEcCCEEEECCCC
Confidence            445689999999999998  999999999999988  333221112289999    999 999999999975

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=97.58  E-value=0.0096  Score=51.97  Aligned_cols=114  Identities=23%  Similarity=0.320  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEA  304 (554)
Q Consensus       225 l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~  304 (554)
                      ...++..+...+..+...+...+.....++.....+..+++.+...++.-...+.+.+..+..+......|+..+..+..
T Consensus        11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~   90 (129)
T 2fxo_A           11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNK   90 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34688888999999999999999999999999999999999999999888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          305 EKAELEMALAKSQDSVEASELQLREATMQLEELQ  338 (554)
Q Consensus       305 eleele~el~~l~~el~~~e~~i~ele~ele~l~  338 (554)
                      .++..+.....+......++..+..++..++++.
T Consensus        91 rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e  124 (129)
T 2fxo_A           91 RLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887777777776666666666666665555543

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.57  E-value=0.019  Score=52.96  Aligned_cols=39  Identities=15%  Similarity=0.197  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          339 RELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVE  377 (554)
Q Consensus       339 ~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~  377 (554)
                      ..-+.++.....+...+..++..+...-.+..-|+.++.
T Consensus       116 q~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~  154 (189)
T 2v71_A          116 QANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD  154 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333444444444444444445555555554

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=97.48  E-value=0.052  Score=48.51  Aligned_cols=51  Identities=14%  Similarity=0.307  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          331 TMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERA  381 (554)
Q Consensus       331 e~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~  381 (554)
                      ...-+.+..+|..+...+..++.+....+..+..++..++.++.++...+.
T Consensus        69 sqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Ke  119 (155)
T 2efr_A           69 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL  119 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455555555555555555555555555555555555555544433

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.19  E-value=0.12  Score=46.51  Aligned_cols=6  Identities=0%  Similarity=0.047  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 008764          392 KLEEEQ  397 (554)
Q Consensus       392 eLe~el  397 (554)
                      .|.+.+
T Consensus       122 ~L~Ekl  127 (168)
T 3o0z_A          122 EAQDML  127 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.98  E-value=0.45  Score=61.24  Aligned_cols=7  Identities=14%  Similarity=-0.007  Sum_probs=2.9

Q ss_pred             HHHHHHH
Q 008764          439 SLGKQLK  445 (554)
Q Consensus       439 ~L~~ql~  445 (554)
                      .+...+.
T Consensus      2131 ~W~~~l~ 2137 (3245)
T 3vkg_A         2131 KWMIRLD 2137 (3245)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3444443

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=96.90  E-value=0.22  Score=44.50  Aligned_cols=122  Identities=21%  Similarity=0.265  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008764          280 ELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSME  359 (554)
Q Consensus       280 ~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le  359 (554)
                      ..+........++..|+..+..+...+..++..-......-...+.+|..|...+.+.......+...+..++..+..++
T Consensus        32 raEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lE  111 (155)
T 2efr_A           32 RAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE  111 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444444444444443333333333344444444444444444444444444444444455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          360 MEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMK  401 (554)
Q Consensus       360 ~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~  401 (554)
                      .++..-+.++..+..++...-.....+...+..|..++.+++
T Consensus       112 d~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~  153 (155)
T 2efr_A          112 DELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK  153 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            555445555555555555544444555666666666666554

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.77  E-value=0.047  Score=63.93  Aligned_cols=11  Identities=0%  Similarity=-0.191  Sum_probs=8.6

Q ss_pred             cccCCCceecc
Q 008764          171 EKAVNRNLSAS  181 (554)
Q Consensus       171 ~~~~g~~~v~~  181 (554)
                      .|.||.|.|+-
T Consensus       741 ~~~~G~TKVF~  751 (1080)
T 2dfs_A          741 KYQFGKTKIFF  751 (1080)
T ss_dssp             GEEECSSEEEE
T ss_pred             hheeccccchh
Confidence            78889888863

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.69  E-value=0.075  Score=62.25  Aligned_cols=6  Identities=50%  Similarity=1.093  Sum_probs=2.6

Q ss_pred             HHHHHH
Q 008764           86 KLEAEC   91 (554)
Q Consensus        86 kLEae~   91 (554)
                      =|..+|
T Consensus       508 lLdee~  513 (1080)
T 2dfs_A          508 LLDEEC  513 (1080)
T ss_dssp             HHHHHT
T ss_pred             eccccc
Confidence            344444

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=96.51  E-value=0.36  Score=41.84  Aligned_cols=31  Identities=26%  Similarity=0.424  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          370 NSLEEEVEMERALSMQITVKCQKLEEEQWRM  400 (554)
Q Consensus       370 ~~Le~el~~~~~~~~e~e~kl~eLe~el~~~  400 (554)
                      ..+...++........+.....+++.++..+
T Consensus        86 ~el~~rleeeee~~~~L~~~kkkle~e~~~L  116 (129)
T 2fxo_A           86 KEMNKRLEDEEEMNAELTAKKRKLEDECSEL  116 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=96.43  E-value=0.17  Score=41.97  Aligned_cols=39  Identities=23%  Similarity=0.361  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008764          335 EELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLE  373 (554)
Q Consensus       335 e~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le  373 (554)
                      +..+..+......+...+......+.++..|.++|..|+
T Consensus        61 d~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE   99 (101)
T 3u1c_A           61 DQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            333333333333333444444444455555555554443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=96.06  E-value=0.28  Score=40.63  Aligned_cols=36  Identities=14%  Similarity=0.235  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008764          337 LQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSL  372 (554)
Q Consensus       337 l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~L  372 (554)
                      ....+..+...+...+......+.++..|.++|..+
T Consensus        63 ~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll   98 (101)
T 3u59_A           63 YSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333444444444455555554443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.56  E-value=0.16  Score=55.38  Aligned_cols=44  Identities=16%  Similarity=0.214  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008764          332 MQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEE  375 (554)
Q Consensus       332 ~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~e  375 (554)
                      ..++.++.++..++........++..+..+...+..++.+++.+
T Consensus       537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~  580 (597)
T 3oja_B          537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK  580 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444333344444444444444444444444433

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=95.37  E-value=0.26  Score=43.70  Aligned_cols=43  Identities=21%  Similarity=0.262  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          360 MEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQ  402 (554)
Q Consensus       360 ~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~  402 (554)
                      ........++..++..+............+|..|+.++..+..
T Consensus        73 rKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~  115 (147)
T 2b9c_A           73 RKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTN  115 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444545444444444455555555555544443

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=94.19  E-value=2.3  Score=36.10  Aligned_cols=55  Identities=20%  Similarity=0.243  Sum_probs=36.4

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          348 KRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQ  402 (554)
Q Consensus       348 ~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~  402 (554)
                      +.+++..|.....-+..+..-|-.|..++++++-...+....+..|.-+-+.++.
T Consensus       100 LrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vke  154 (167)
T 4gkw_A          100 LGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKE  154 (167)
T ss_dssp             THHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Confidence            4566777777777777787888888888877776666665555555544444443

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=93.86  E-value=0.94  Score=36.49  Aligned_cols=74  Identities=19%  Similarity=0.342  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEA  304 (554)
Q Consensus       225 l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~  304 (554)
                      ...++..+..++..+...+...+....+++.....+..+.++|..+       +.+++.....+......|+..+..+..
T Consensus        12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K~eLE~~l~el~~   84 (89)
T 3bas_A           12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKNYHLENEVARLKK   84 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578888888899999999888888888888888888888887766       555555555555555555555555543


Q ss_pred             H
Q 008764          305 E  305 (554)
Q Consensus       305 e  305 (554)
                      .
T Consensus        85 r   85 (89)
T 3bas_A           85 L   85 (89)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=93.80  E-value=1.1  Score=38.88  Aligned_cols=25  Identities=12%  Similarity=0.169  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          245 RMDAEKVDLEEKLDKMDAEKAELEE  269 (554)
Q Consensus       245 ~le~ei~eLe~~l~~l~~e~~~l~~  269 (554)
                      ....++.++...++.+..++..+..
T Consensus        35 ~~k~Ei~elrr~iq~L~~el~~l~~   59 (131)
T 3tnu_A           35 SGKSEISELRRTMQNLEIELQSQLS   59 (131)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333444444444443333333

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=92.93  E-value=1.3  Score=36.65  Aligned_cols=67  Identities=18%  Similarity=0.185  Sum_probs=40.5

Q ss_pred             cCCcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 008764          210 ESGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDA---EKAELEEKLEQMDAEKAE  280 (554)
Q Consensus       210 ~sG~~tGG~~~~~~~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~---e~~~l~~~ie~l~~el~~  280 (554)
                      .+|.+..|...    ...+|..|..++...+..|......+..++..+.....   .+.-|+.++.-+..++..
T Consensus        11 ~~~~~~~~~~~----~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~a   80 (110)
T 2v4h_A           11 SSGLVPRGSHM----ASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA   80 (110)
T ss_dssp             --CCCCTTCCS----SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcchhHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            45555554432    22378888888888888888888888777777776555   344444444444444433

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=92.75  E-value=1.5  Score=38.40  Aligned_cols=8  Identities=38%  Similarity=0.439  Sum_probs=4.8

Q ss_pred             CCc-cccCC
Q 008764          205 SGK-HVESG  212 (554)
Q Consensus       205 ~G~-~~~sG  212 (554)
                      .|. |.-.|
T Consensus        15 ~Gk~Y~i~g   23 (138)
T 3hnw_A           15 GGKVIKLGG   23 (138)
T ss_dssp             TTEEEEECS
T ss_pred             CCEEEEecC
Confidence            676 65554

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=92.64  E-value=2.2  Score=36.82  Aligned_cols=16  Identities=13%  Similarity=0.310  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHHHHH
Q 008764          250 KVDLEEKLDKMDAEKA  265 (554)
Q Consensus       250 i~eLe~~l~~l~~e~~  265 (554)
                      +.++...++.+..++.
T Consensus        38 i~elrr~iq~L~~el~   53 (129)
T 3tnu_B           38 ISEMNRMIQRLRAEID   53 (129)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=92.33  E-value=2.8  Score=33.00  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=13.1

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          347 SKRIVESNVSSMEMEAQTMTAKINSLEEEVEM  378 (554)
Q Consensus       347 ~~~~le~~L~~le~ei~~l~~~i~~Le~el~~  378 (554)
                      .+...+......+.++..++.++..++.+++.
T Consensus        28 ~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~   59 (81)
T 1ic2_A           28 DKKAAEERSKQLEDELVALQKKLKGTEDELDK   59 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444444444444444444333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=91.85  E-value=3.5  Score=35.49  Aligned_cols=33  Identities=12%  Similarity=0.278  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008764          324 ELQLREATMQLEELQRELNLVNESKRIVESNVS  356 (554)
Q Consensus       324 e~~i~ele~ele~l~~el~~l~~~~~~le~~L~  356 (554)
                      +.++.++...+..++.++..+......++..+.
T Consensus        35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~   67 (129)
T 3tnu_B           35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIA   67 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            333444444444444444444433333443333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=91.29  E-value=3.1  Score=35.88  Aligned_cols=33  Identities=18%  Similarity=0.235  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008764          324 ELQLREATMQLEELQRELNLVNESKRIVESNVS  356 (554)
Q Consensus       324 e~~i~ele~ele~l~~el~~l~~~~~~le~~L~  356 (554)
                      +.+|.++...+..++.++..+...+..++..+.
T Consensus        37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~   69 (131)
T 3tnu_A           37 KSEISELRRTMQNLEIELQSQLSMKASLENSLE   69 (131)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            333444444444444444444433333443333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=91.03  E-value=3.2  Score=36.21  Aligned_cols=48  Identities=10%  Similarity=0.247  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          297 EKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLV  344 (554)
Q Consensus       297 ~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l  344 (554)
                      .+...++.+++++..++..+..++...+.++..+..++..++.++..+
T Consensus        75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l  122 (138)
T 3hnw_A           75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY  122 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=90.91  E-value=3.4  Score=32.96  Aligned_cols=15  Identities=7%  Similarity=0.262  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 008764          293 AKLEEKIEKMEAEKA  307 (554)
Q Consensus       293 ~~Le~ele~le~ele  307 (554)
                      ...+..+..+.+.++
T Consensus        45 ~~~E~d~~~LrkdvD   59 (86)
T 3swk_A           45 EEAENTLQSFRQDVD   59 (86)
T ss_dssp             HHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHhhHH
Confidence            333333333333333

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=90.90  E-value=5.2  Score=42.04  Aligned_cols=26  Identities=8%  Similarity=0.346  Sum_probs=13.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          353 SNVSSMEMEAQTMTAKINSLEEEVEM  378 (554)
Q Consensus       353 ~~L~~le~ei~~l~~~i~~Le~el~~  378 (554)
                      .+|..|+..+.++..+|..|+..|.-
T Consensus       131 snIrvLQsnLedq~~kIQRLEvDIdi  156 (562)
T 3ghg_A          131 QHIQLLQKNVRAQLVDMKRLEVDIDI  156 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445555555555555555543

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=90.26  E-value=6.3  Score=31.86  Aligned_cols=37  Identities=22%  Similarity=0.356  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          226 RAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDA  262 (554)
Q Consensus       226 ~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~  262 (554)
                      +.+|..|..++..+-.++..++++-..|+.++..+..
T Consensus         8 Ke~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~   44 (93)
T 3s4r_A            8 KVELQELNDRFANLIDKVRFLEQQNKILLAELEQLKG   44 (93)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3568888999999988888888888888777766543

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=89.74  E-value=0.74  Score=40.54  Aligned_cols=89  Identities=20%  Similarity=0.171  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHH
Q 008764            3 LEFESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIK   82 (554)
Q Consensus         3 ~~le~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~   82 (554)
                      ..+|++..+|-.....+...+..+...++...+..++.++..+...|.++..++......++..+.....+.-+..-.+.
T Consensus        38 d~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~  117 (152)
T 3a7p_A           38 NDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQ  117 (152)
T ss_dssp             -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666655433322111222345567777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHH
Q 008764           83 KVAKLEAEC   91 (554)
Q Consensus        83 ki~kLEae~   91 (554)
                      ++.+|+++-
T Consensus       118 kl~kLq~EN  126 (152)
T 3a7p_A          118 KLSDLKKEH  126 (152)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777763

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=88.24  E-value=11  Score=31.97  Aligned_cols=62  Identities=18%  Similarity=0.316  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLE  286 (554)
Q Consensus       225 l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~  286 (554)
                      +...+..++.++.+...++.-+-.=+.+-..+++++...-...+..+..+.++...++..+.
T Consensus        16 L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~   77 (167)
T 4gkw_A           16 LKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLE   77 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHH
Confidence            34445555555555544444333333344455555555554445555555544444444333

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=84.93  E-value=16  Score=30.46  Aligned_cols=27  Identities=15%  Similarity=0.278  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          295 LEEKIEKMEAEKAELEMALAKSQDSVE  321 (554)
Q Consensus       295 Le~ele~le~eleele~el~~l~~el~  321 (554)
                      |+.++-..+.-+...+.+...|+..+.
T Consensus        30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~   56 (121)
T 3mq7_A           30 LQQELTEAQKGFQDVEAQAATANHTVM   56 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333334444444444444333

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=84.86  E-value=41  Score=35.20  Aligned_cols=10  Identities=20%  Similarity=0.391  Sum_probs=5.2

Q ss_pred             ccCCCCcccc
Q 008764          479 KLPSNVTFSH  488 (554)
Q Consensus       479 ~~~~~~~~~~  488 (554)
                      ..|.+-.|+-
T Consensus       372 ~~hng~~FST  381 (464)
T 1m1j_B          372 TIHNGMYFST  381 (464)
T ss_dssp             TCCTTCCCBB
T ss_pred             cccccccccc
Confidence            4565555543

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=83.87  E-value=11  Score=30.19  Aligned_cols=52  Identities=15%  Similarity=0.157  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 008764          229 LEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDA---EKAELEEKLEQMDAEKAE  280 (554)
Q Consensus       229 i~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~---e~~~l~~~ie~l~~el~~  280 (554)
                      +..|...+...+..+......|..++..+.....   .+..|+.++.-+..++..
T Consensus         4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~a   58 (94)
T 3jsv_C            4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA   58 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666666666666666666665555543   333444444444444433

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=82.31  E-value=22  Score=37.40  Aligned_cols=9  Identities=0%  Similarity=0.029  Sum_probs=3.5

Q ss_pred             HHHHHHHHH
Q 008764          392 KLEEEQWRM  400 (554)
Q Consensus       392 eLe~el~~~  400 (554)
                      .++.+|+.+
T Consensus       180 ~~QKQLeQv  188 (562)
T 3ghg_A          180 DQQKQLEQV  188 (562)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333344333

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=80.66  E-value=15  Score=28.72  Aligned_cols=38  Identities=16%  Similarity=0.371  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764          280 ELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQ  317 (554)
Q Consensus       280 ~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~  317 (554)
                      +++.+...+..++..++..++....+...+..++..+.
T Consensus        17 ~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~   54 (79)
T 3cvf_A           17 DLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA   54 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	554
d1gxja_	161	Smc hinge domain {Thermotoga maritima [TaxId: 2336	98.2

>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Smc hinge domain
superfamily: Smc hinge domain
family: Smc hinge domain
domain: Smc hinge domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.20  E-value=9.1e-08  Score=85.57  Aligned_cols=63  Identities=10%  Similarity=0.108  Sum_probs=52.0

Q ss_pred             CchhhHHHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCCC
Q 008764          152 SCSDSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQS  218 (554)
Q Consensus       152 ~~~~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~  218 (554)
                      .+..+||.++|.|++.|++  .++||++++|+|++.  ++...+-.-.|+||+    +|+ ++++|.||||.
T Consensus        93 ~~~v~~~~dlV~~~~~~~~~~~~llg~~~iv~~l~~A~~l~~~~~~~~~~VT~----dGd~~~~~G~i~GG~  160 (161)
T d1gxja_          93 RGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATL----DGELISGRGAITGGR  160 (161)
T ss_dssp             TTEEEEHHHHCBCCGGGHHHHHHHHTTCEEESCHHHHHHHHHHHTCCSCEEET----TSCEECTTSCEEEEE
T ss_pred             CCcchhHHHhccCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCCeEEeC----CCcEECCCeeEeCCC
Confidence            3456799999999999999  999999999999987  553332222388999    999 99999999984