Citrus Sinensis ID: 008767

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550----
MSTPVPAAVSSSIGEARPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHcccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcHHHccccHHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccc
ccccccccccccccccccccccccccccccHHEccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHccccHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHcHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHEcccccc
mstpvpaavsssigearpiagfhpnlwghhflkssfdfqtidTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANdlgsdsdnlyTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLnmysrddlhdETLLKFAKLDFNLLQAAHQKELSDMTRWwkdldiptklpyardRMVEVYFWTLVGvycepkytfGRILVSKIICLISLIDdtfdaygtfEELTLFTEAVKRwdtnvtdtlPACMKFIYNKLLGVYNEAEEELAKQGrsygipyakQTMQEVILMYFTEAKwlkegyvpsveEYKSVALRSIAVLPVVtasfldmgdiATKEVFEWVLKVPKIITASENICRLLDDVAShkfeqkrghipsavECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIamplpllgpvlnlarmsefiyedgvdrytnsykmkDQVALVLKDPVTF
MSTPVPAAVSSSIGEARPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVfekfkddegkfkASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKdldiptklpyarDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRytnsykmkdqvalvlkdpvtf
MSTPVPAAVSSSIGEARPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVfekfkddegkfkASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHalrlplrkalprlearYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEllnliamplpllGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF
*****************PIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVL******
*********************FHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMI*****EISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMI*******LAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVAS****Q**GHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF
***********SIGEARPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF
****************RPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF
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MSTPVPAAVSSSIGEARPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query554 2.2.26 [Sep-21-2011]
Q94JS8560 (E)-beta-farnesene syntha N/A no 0.990 0.980 0.686 0.0
Q6Q3H3557 (-)-germacrene D synthase yes no 0.971 0.965 0.534 1e-164
Q6Q3H2556 Valencene synthase OS=Vit no no 0.989 0.985 0.513 1e-155
E3W207559 Sesquiterpene synthase OS N/A no 0.981 0.973 0.489 1e-153
F6M8H7562 Probable sesquiterpene sy N/A no 0.962 0.948 0.488 1e-151
B5A435559 Sesquiterpene synthase OS N/A no 0.981 0.973 0.485 1e-151
F6M8H6562 Probable sesquiterpene sy N/A no 0.962 0.948 0.487 1e-150
F6M8H4559 Probable sesquiterpene sy N/A no 0.962 0.953 0.488 1e-150
F6M8H5562 Probable sesquiterpene sy N/A no 0.962 0.948 0.483 1e-147
E3W208562 Sesquiterpene synthase OS N/A no 0.962 0.948 0.483 1e-147
>sp|Q94JS8|FARS_CITJU (E)-beta-farnesene synthase OS=Citrus junos PE=1 SV=1 Back     alignment and function desciption
 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/558 (68%), Positives = 453/558 (81%), Gaps = 9/558 (1%)

Query: 1   MSTPVPAAVSSSIGEA-RPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRM 59
           MS P+ AAVSSS  E  RPIA FHP LWG+HFLKS+ D +TID  TQEQ+ ALKQEVRRM
Sbjct: 4   MSIPLLAAVSSSTEETVRPIADFHPTLWGNHFLKSAADVETIDAATQEQHAALKQEVRRM 63

Query: 60  ITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLR 119
           IT+  ++++ KLH+IDAVQRLGVAY FEKEIEDEL K+++DL  DSD+LY VSLRFRL R
Sbjct: 64  ITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKVSHDL--DSDDLYVVSLRFRLFR 121

Query: 120 QQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHL 179
           QQ VKISCDVF+KFKDDEGKFK S+IN++RGMLSLYEAA+LA+ GE ILDEAIVFTTTHL
Sbjct: 122 QQGVKISCDVFDKFKDDEGKFKESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHL 181

Query: 180 KSMIS----RVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKL 235
           KS+IS       ++NLAEQI+H+L++PLRKA  RLEARY+L++YSRDDLHDETLLKFAKL
Sbjct: 182 KSVISISDHSHANSNLAEQIRHSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKL 241

Query: 236 DFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILV 295
           DFN+LQAAHQKE S MTRWW DL  P K+PYARDR++E Y W L+GV  EP   FGRI  
Sbjct: 242 DFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIIETYIWMLLGVSYEPNLAFGRIFA 301

Query: 296 SKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAE 355
           SK++C+I+ IDDTFDAYGTFEELTLFTEAV RWD  + DTLP  MKFI   LL +Y EAE
Sbjct: 302 SKVVCMITTIDDTFDAYGTFEELTLFTEAVTRWDIGLIDTLPEYMKFIVKALLDIYREAE 361

Query: 356 EELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTA 415
           EELAK+GRSYGIPYAKQ MQE+I++YFTEAKWL +GYVP+ +EYKSVALRSI +  +  A
Sbjct: 362 EELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVA 421

Query: 416 SFLDMGD-IATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQ 474
           SF+D+GD IATK+ FE +LK  K + A+E I RL+DD+A +KFEQKRGH PSAVECY  Q
Sbjct: 422 SFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECYKNQ 481

Query: 475 HVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRY 534
           H VSEEEA K L LE+AN WKD+N EELLN   +PLP+L  +L  AR   FIY+DG DRY
Sbjct: 482 HGVSEEEAVKELLLEVANSWKDIN-EELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRY 540

Query: 535 TNSYKMKDQVALVLKDPV 552
           T+S  MK QVAL+L +P+
Sbjct: 541 THSLMMKRQVALLLTEPL 558
Sesquiterpene cyclase catalyzing the production of beta-farnesene from farnesyl diphosphate.
Citrus junos (taxid: 135197)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 4EC: 7
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|F6M8H6|SPIST_SANSP Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|E3W208|SPISS_SANSP Sesquiterpene synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query554
75250254560 RecName: Full=(E)-beta-farnesene synthas 0.990 0.980 0.686 0.0
300079902560 (E)-beta-farnesene synthase [Citrus reti 0.990 0.980 0.682 0.0
313585892551 Tps2-1 [Clausena lansium] 0.974 0.980 0.644 0.0
261343328548 terpene synthase 1 [Citrus sinensis] 0.976 0.987 0.599 0.0
33316389548 valencene synthase [Citrus sinensis] 0.976 0.987 0.597 0.0
19880625548 putative terpene synthase [Citrus x para 0.976 0.987 0.595 0.0
9864189555 terpene synthase [Citrus junos] 0.992 0.990 0.590 0.0
147828675557 hypothetical protein VITISV_013313 [Viti 0.962 0.956 0.541 1e-165
359493937557 PREDICTED: (-)-germacrene D synthase [Vi 0.962 0.956 0.541 1e-165
147856860557 hypothetical protein VITISV_030783 [Viti 0.962 0.956 0.539 1e-164
>gi|75250254|sp|Q94JS8.1|FARS_CITJU RecName: Full=(E)-beta-farnesene synthase; Short=CjFS; AltName: Full=Terpene synthase 10 gi|14134188|gb|AAK54279.1| (E)-beta-farnesene synthase [Citrus junos] Back     alignment and taxonomy information
 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/558 (68%), Positives = 453/558 (81%), Gaps = 9/558 (1%)

Query: 1   MSTPVPAAVSSSIGEA-RPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRM 59
           MS P+ AAVSSS  E  RPIA FHP LWG+HFLKS+ D +TID  TQEQ+ ALKQEVRRM
Sbjct: 4   MSIPLLAAVSSSTEETVRPIADFHPTLWGNHFLKSAADVETIDAATQEQHAALKQEVRRM 63

Query: 60  ITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLR 119
           IT+  ++++ KLH+IDAVQRLGVAY FEKEIEDEL K+++DL  DSD+LY VSLRFRL R
Sbjct: 64  ITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKVSHDL--DSDDLYVVSLRFRLFR 121

Query: 120 QQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHL 179
           QQ VKISCDVF+KFKDDEGKFK S+IN++RGMLSLYEAA+LA+ GE ILDEAIVFTTTHL
Sbjct: 122 QQGVKISCDVFDKFKDDEGKFKESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHL 181

Query: 180 KSMIS----RVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKL 235
           KS+IS       ++NLAEQI+H+L++PLRKA  RLEARY+L++YSRDDLHDETLLKFAKL
Sbjct: 182 KSVISISDHSHANSNLAEQIRHSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKL 241

Query: 236 DFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILV 295
           DFN+LQAAHQKE S MTRWW DL  P K+PYARDR++E Y W L+GV  EP   FGRI  
Sbjct: 242 DFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIIETYIWMLLGVSYEPNLAFGRIFA 301

Query: 296 SKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAE 355
           SK++C+I+ IDDTFDAYGTFEELTLFTEAV RWD  + DTLP  MKFI   LL +Y EAE
Sbjct: 302 SKVVCMITTIDDTFDAYGTFEELTLFTEAVTRWDIGLIDTLPEYMKFIVKALLDIYREAE 361

Query: 356 EELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTA 415
           EELAK+GRSYGIPYAKQ MQE+I++YFTEAKWL +GYVP+ +EYKSVALRSI +  +  A
Sbjct: 362 EELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVA 421

Query: 416 SFLDMGD-IATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQ 474
           SF+D+GD IATK+ FE +LK  K + A+E I RL+DD+A +KFEQKRGH PSAVECY  Q
Sbjct: 422 SFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECYKNQ 481

Query: 475 HVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRY 534
           H VSEEEA K L LE+AN WKD+N EELLN   +PLP+L  +L  AR   FIY+DG DRY
Sbjct: 482 HGVSEEEAVKELLLEVANSWKDIN-EELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRY 540

Query: 535 TNSYKMKDQVALVLKDPV 552
           T+S  MK QVAL+L +P+
Sbjct: 541 THSLMMKRQVALLLTEPL 558

Source: Citrus junos

Species: Citrus junos

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|300079902|gb|ADJ67476.1| (E)-beta-farnesene synthase [Citrus reticulata] Back     alignment and taxonomy information
>gi|313585892|gb|ADR71055.1| Tps2-1 [Clausena lansium] Back     alignment and taxonomy information
>gi|261343328|gb|ACX70155.1| terpene synthase 1 [Citrus sinensis] Back     alignment and taxonomy information
>gi|33316389|gb|AAQ04608.1|AF441124_1 valencene synthase [Citrus sinensis] Back     alignment and taxonomy information
>gi|19880625|gb|AAM00426.1|AF411120_1 putative terpene synthase [Citrus x paradisi] Back     alignment and taxonomy information
>gi|9864189|gb|AAG01339.1| terpene synthase [Citrus junos] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query554
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.981 0.973 0.442 3e-124
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.981 0.952 0.429 2.7e-116
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.960 0.943 0.426 2.2e-112
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.960 0.941 0.409 4.3e-109
UNIPROTKB|Q49SP4545 Q49SP4 "Germacrene D synthase 0.954 0.970 0.406 8.1e-108
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.971 0.969 0.408 7.2e-107
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.980 0.987 0.394 1.4e-105
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.951 0.951 0.392 4.1e-104
UNIPROTKB|E2E2N7555 TPS4 "Bicyclogermacrene syntha 0.978 0.976 0.379 3.7e-103
UNIPROTKB|Q49SP6554 Q49SP6 "Germacrene D synthase 0.944 0.944 0.389 2.8e-98
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 1221 (434.9 bits), Expect = 3.0e-124, P = 3.0e-124
 Identities = 246/556 (44%), Positives = 350/556 (62%)

Query:     5 VPAAVSSSIGE-ARPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSA 63
             VP +   ++ E +RPIA F P++WG  F+  + + +      + Q + LK++VRR + + 
Sbjct:     6 VPISSVPNLKELSRPIANFPPSIWGDRFINYACEDENEQAQKERQVEELKEQVRRELAAT 65

Query:    64 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKL------ANDLGSDSDNLYTVSLRFRL 117
             VD+   +L++IDA QRLG+AY FE EIE+ L+ +       N+    S +LY+V+L FRL
Sbjct:    66 VDKPLQQLNIIDATQRLGIAYHFENEIEESLEHIYLHTYVENNCFQGSHDLYSVALWFRL 125

Query:   118 LRQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTT 177
             LRQ   K+SCDV             S++ + +G+L LYEA HL+VHGE +LD+A+ F  T
Sbjct:   126 LRQDGYKVSCDVFDKFRDYEDNFKNSLMEDAKGLLELYEATHLSVHGEEMLDDALEFAKT 185

Query:   178 HLKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDDLHDETLLKFAKLDF 237
              L+S+++  ++  LAEQ++H                Y+  +Y   D H++ LLK AKLDF
Sbjct:   186 RLESIVNH-LNYPLAEQVRHALYRPLRKGLPRLEAVYFFRIYEAYDSHNKALLKLAKLDF 244

Query:   238 NLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSK 297
             NLLQ+ H+KELSDM RWWK LD   K P+ARDR+VE YFW L GVY EP+Y+  R ++ K
Sbjct:   245 NLLQSLHKKELSDMARWWKSLDFAAKFPFARDRLVEGYFWVL-GVYFEPQYSLARKIIIK 303

Query:   298 IICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEE 357
             +  +IS IDD +DAYGT +EL LFT+A++RWD    D LP  MK  Y  +L VYNE EEE
Sbjct:   304 VFTMISTIDDIYDAYGTLDELELFTKAMQRWDVGSLDQLPEYMKPCYKSILDVYNEIEEE 363

Query:   358 LAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF 417
             +  QG  + + YAK+ M++++  Y  EAKW  E YVP+ EEY  VAL +     + T S+
Sbjct:   364 MDNQGSLFRMHYAKEVMKKLVEGYMDEAKWCHEKYVPTFEEYMPVALVTSGYTFLTTISY 423

Query:   418 LDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVV 477
             L MG+IA+KE F+W+   P +I ASE++CRL+DD+ SHKFEQ+RGH+ S +ECYMKQ+ V
Sbjct:   424 LGMGEIASKEAFDWLFSHPPVIEASESVCRLMDDMRSHKFEQERGHVASGIECYMKQYGV 483

Query:   478 SEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNS 537
             +EEEA      ++   WKD+N EE              +LNL R+ + IY++  D YT+ 
Sbjct:   484 TEEEAHDEFRKQLVKAWKDIN-EECLRPYRVPKPLLMRILNLTRVIDVIYKNE-DGYTHV 541

Query:   538 YK-MKDQVALVLKDPV 552
              K MKD +A +L DP+
Sbjct:   542 KKAMKDNIASLLIDPM 557
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP6 Q49SP6 "Germacrene D synthase 2" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94JS8FARS_CITJU4, ., 2, ., 3, ., 4, 70.68630.99090.9803N/Ano
Q84UU4HUMS_ARATH4, ., 2, ., 3, ., -0.40660.94940.9616yesno
Q6Q3H3TPSGD_VITVI4, ., 2, ., 3, ., 7, 50.53470.97110.9658yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.976
3rd Layer4.2.3.47LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-108
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-107
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 2e-77
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 3e-38
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 7e-29
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 6e-24
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 5e-10
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  683 bits (1765), Expect = 0.0
 Identities = 265/545 (48%), Positives = 373/545 (68%), Gaps = 13/545 (2%)

Query: 17  RPIAGFHPNLWGH-HFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISH--KLHL 73
           RP A F P+LWG  HFL  S D+   D   +E+ + LK+EVR+M+  +   +    +L L
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSEEDEL-EEEIEELKEEVRKMLEDSEYPVDLFERLWL 59

Query: 74  IDAVQRLGVAYQFEKEIEDELQKLANDLG----SDSDNLYTVSLRFRLLRQQRVKISCDV 129
           ID +QRLG++Y FE EI++ L  +         S+ D+LYT +L FRLLRQ    +S DV
Sbjct: 60  IDRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDV 119

Query: 130 FEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR--VI 187
           F+KFKD++GKFK S+  +V+GMLSLYEA+HL+  GE ILDEA+ FTT HL+  +    +I
Sbjct: 120 FKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWII 179

Query: 188 SNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKE 247
             +L+ +I++AL +PL  +LPRLEAR+Y+  Y ++D H+ETLL+ AKLDFN+LQA HQ+E
Sbjct: 180 DPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEE 239

Query: 248 LSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDD 307
           L  ++RWWKDLD+ +KLP+ARDR+VE YFW   G Y EP+Y+  RI ++K I LI++IDD
Sbjct: 240 LKILSRWWKDLDLASKLPFARDRLVECYFWA-AGTYFEPQYSLARIALAKTIALITVIDD 298

Query: 308 TFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGI 367
           T+D YGT EEL LFTEAV+RWD +  D LP  MK ++  LL   NE EEEL K+G SY +
Sbjct: 299 TYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVV 358

Query: 368 PYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKE 427
           PY K+  ++++  Y  EAKW  EGYVP+ EEY   AL SI + P++  SFL MGDI T+E
Sbjct: 359 PYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEE 418

Query: 428 VFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALW 487
            FEW+   PK++ AS  I RL++D+A+++ E KRG + S++ECYMK++ VSEEEA + + 
Sbjct: 419 AFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIK 478

Query: 488 LEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSY-KMKDQVAL 546
             I + WK+LN E L     +P P+    LNLAR+ +  Y++G D +T+   ++KD +  
Sbjct: 479 KMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEG-DGFTHPEGEIKDHITS 537

Query: 547 VLKDP 551
           +L +P
Sbjct: 538 LLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 554
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.97
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.84
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.54
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.47
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 92.33
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 92.05
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 87.99
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 86.81
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 84.91
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=6.8e-153  Score=1262.66  Aligned_cols=531  Identities=50%  Similarity=0.884  Sum_probs=507.2

Q ss_pred             CCCCCCCCCCCcc-ccccccCCccccchhhHHHHHHHHHHHHHHHhhc--hhchhhhhhHHHHHHHhCcccccHHHHHHH
Q 008767           17 RPIAGFHPNLWGH-HFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSA--VDEISHKLHLIDAVQRLGVAYQFEKEIEDE   93 (554)
Q Consensus        17 r~~~~~~ps~W~~-~f~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~--~~~~~~~l~liD~lqrLGi~~hF~~EI~~~   93 (554)
                      ||+++||||+||| +|++++++. .....+.+++++||++||+||...  +.|++++|++||+||||||+|||++||+++
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~-~~~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~   79 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDY-SEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEI   79 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCc-chhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence            7899999999999 566554332 212257899999999999999865  679999999999999999999999999999


Q ss_pred             HHHHHhc-cC---CCCCChhhHHHHHHHhhhcCcccchhhhhccccccccccccccccchhhhhHHHhhcccccCchHHH
Q 008767           94 LQKLAND-LG---SDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILD  169 (554)
Q Consensus        94 L~~i~~~-~~---~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~~lL~LyeAs~l~~~gE~iLd  169 (554)
                      |++||++ ..   ....||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|||
T Consensus        80 L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLd  159 (542)
T cd00684          80 LDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILD  159 (542)
T ss_pred             HHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHH
Confidence            9999986 11   2357999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHhhh--cCCccHHHHHHHHccCcccccchhHHHHHhHHhhcCCCcCcHHHHHHHhhchHHHHHhhHHH
Q 008767          170 EAIVFTTTHLKSMISR--VISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKE  247 (554)
Q Consensus       170 ea~~ft~~~L~~~~~~--~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~~~n~~lLelAkldFn~~Q~~hq~E  247 (554)
                      ||++||++||++.+.+  ..+++|+++|++||++|||+++||||||+||++|++++++|++||||||+|||+||++||+|
T Consensus       160 eA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~E  239 (542)
T cd00684         160 EALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEE  239 (542)
T ss_pred             HHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHH
Confidence            9999999999999986  13789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHhhh
Q 008767          248 LSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKR  327 (554)
Q Consensus       248 l~~lsrWwk~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~r  327 (554)
                      |+++++||+++||.++|||+|+|+++||||++ |++|+|++|.+|+++||+++|+|++||+||.|||.+|++.||+||+|
T Consensus       240 l~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~-a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~r  318 (542)
T cd00684         240 LKILSRWWKDLDLASKLPFARDRLVECYFWAA-GTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVER  318 (542)
T ss_pred             HHHHhHHHHhcCCcccCCcccchhHHHHHHHH-hcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHh
Confidence            99999999999999888999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhcc
Q 008767          328 WDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSI  407 (554)
Q Consensus       328 Wd~~~~~~lPe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~  407 (554)
                      ||+++++++|+|||+||.++++++++++.++.+++++++++|++++|+++++||++||+|+++||+||++|||++|++|+
T Consensus       319 wd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~  398 (542)
T cd00684         319 WDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSI  398 (542)
T ss_pred             ccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHh
Confidence            99999999999999999999999999999988888889999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCcchhhhccCCCcchhhHHHhcCCCCHHHHHHHHH
Q 008767          408 AVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALW  487 (554)
Q Consensus       408 g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~EeA~~~i~  487 (554)
                      |+++++++++++||..+|+++++|+..+|+|+++++.++||+|||+||++|+++|+++|+|.|||+|+|+|+|+|+++++
T Consensus       399 g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i~  478 (542)
T cd00684         399 GLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIK  478 (542)
T ss_pred             hHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHH
Confidence            99999999999999999999999987779999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHhhcc-CCCChhHHHHHHHHhhhhhhccccCCCCCCCChh-HHHHHHhhhcCc
Q 008767          488 LEIANGWKDLNYEELLNL-IAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDP  551 (554)
Q Consensus       488 ~~i~~~wk~ln~~e~l~~-~~~p~~~~~~~~N~aR~~~~~Y~~~~D~~t~~~~-~k~~i~~ll~~p  551 (554)
                      ++|+++||++| ++++++ +++|++|++++||+||+++++|+++ ||||.|++ ||++|++||++|
T Consensus       479 ~~ie~~wk~ln-~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~-D~~t~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         479 KMIEDAWKELN-EEFLKPSSDVPRPIKQRFLNLARVIDVFYKEG-DGFTHPEGEIKDHITSLLFEP  542 (542)
T ss_pred             HHHHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCccHHHHHHHHHHhcCC
Confidence            99999999999 999998 7899999999999999999999999 99999976 999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-126
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-110
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-110
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-110
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-110
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-110
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-110
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-109
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 1e-108
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 1e-107
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 4e-79
2j5c_A569 Rational Conversion Of Substrate And Product Specif 4e-74
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 2e-69
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 2e-67
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 6e-59
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 2e-50
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 2e-47
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 3e-10
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  449 bits (1154), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/552 (42%), Positives = 337/552 (61%), Gaps = 7/552 (1%)
Query: 4   PVPAAVSSSIGEARPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSA 63
           P  + +SS+  E RP A F P++WG  FL      + ID  T++++  LK+EVR+MI + 
Sbjct: 9   PSSSPLSSNKDEMRPKADFQPSIWGDLFLNCPD--KNIDAETEKRHQQLKEEVRKMIVAP 66
Query: 64  VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRV 123
           +   + KL  ID+VQRLGV+Y F KEIEDEL+ + ++     ++LYT S+RFRLLR+   
Sbjct: 67  MANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGY 126
Query: 124 KISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMI 183
            +SCDV            +S+ ++VRG+L LY+A++L VHGE ILDEAI FTT HL S+ 
Sbjct: 127 NVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHL-SLA 185
Query: 184 SRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDDLHDETLLKFAKLDFNLLQAA 243
              + + L+E++ H                +YL++Y   + H++ LL+FAK+DFN+LQ  
Sbjct: 186 VASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFL 245
Query: 244 HQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLIS 303
           H+KELS++ RWWKDLD   KLPYARDR+VE YFW + GVY EP+Y+ GR +++K+I + S
Sbjct: 246 HRKELSEICRWWKDLDFQRKLPYARDRVVEGYFW-ISGVYFEPQYSLGRKMLTKVIAMAS 304
Query: 304 LIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGR 363
           ++DDT+D+Y T+EEL  +T A++RWD    D +P  MK  Y  LL VY E  + +A+ GR
Sbjct: 305 IVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGR 364
Query: 364 SYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDI 423
            Y + YAK  M  +   Y  EAKW  + Y PS EE+K+ AL +     +   SF+ MGDI
Sbjct: 365 QYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDI 424
Query: 424 ATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAE 483
            T E F+W    PKII AS  ICR +DDVA HKF+ +R    SA+ECYM+++ V+ +EA 
Sbjct: 425 VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAY 484
Query: 484 KALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNSYK-MKD 542
                 + + WKDLN +E               LNLAR+ + +Y +G D YT   K  K 
Sbjct: 485 DVFNKHVESAWKDLN-QEFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKG 542
Query: 543 QVALVLKDPVTF 554
            +  +L +P+  
Sbjct: 543 GITSLLIEPIAL 554
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 0.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 0.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 0.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 0.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 0.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-176
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-148
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-148
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-145
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 2e-97
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 5e-32
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 7e-29
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 5e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 3e-11
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 4e-05
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  545 bits (1405), Expect = 0.0
 Identities = 256/558 (45%), Positives = 366/558 (65%), Gaps = 12/558 (2%)

Query: 1   MSTPV-----PAAVSSSIGEARPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQE 55
           M++ V      + +SS+  E RP A F P++WG  FL        ID  T++++  LK+E
Sbjct: 1   MASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLNCPDK--NIDAETEKRHQQLKEE 58

Query: 56  VRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRF 115
           VR+MI + +   + KL  ID+VQRLGV+Y F KEIEDEL+ + ++     ++LYT S+RF
Sbjct: 59  VRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRF 118

Query: 116 RLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFT 175
           RLLR+    +SCDVF KFKD++G FK+S+ ++VRG+L LY+A++L VHGE ILDEAI FT
Sbjct: 119 RLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFT 178

Query: 176 TTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKL 235
           T HL   ++  + + L+E++ HAL+  +R+ LPR+EAR+YL++Y   + H++ LL+FAK+
Sbjct: 179 THHLSLAVAS-LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKI 237

Query: 236 DFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILV 295
           DFN+LQ  H+KELS++ RWWKDLD   KLPYARDR+VE YFW   GVY EP+Y+ GR ++
Sbjct: 238 DFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWI-SGVYFEPQYSLGRKML 296

Query: 296 SKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAE 355
           +K+I + S++DDT+D+Y T+EEL  +T A++RWD    D +P  MK  Y  LL VY E  
Sbjct: 297 TKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMV 356

Query: 356 EELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTA 415
           + +A+ GR Y + YAK  M  +   Y  EAKW  + Y PS EE+K+ AL +     +   
Sbjct: 357 QLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAIT 416

Query: 416 SFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQH 475
           SF+ MGDI T E F+W    PKII AS  ICR +DDVA HKF+ +R    SA+ECYM+++
Sbjct: 417 SFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEY 476

Query: 476 VVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYT 535
            V+ +EA       + + WKDLN +E L    MP  +L   LNLAR+ + +Y +G D YT
Sbjct: 477 GVTAQEAYDVFNKHVESAWKDLN-QEFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYT 534

Query: 536 NSYK-MKDQVALVLKDPV 552
              K  K  +  +L +P+
Sbjct: 535 YVGKAAKGGITSLLIEPI 552
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query554
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.73
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.19
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 90.3
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 89.35
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 85.32
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 83.33
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=3.8e-168  Score=1371.38  Aligned_cols=533  Identities=47%  Similarity=0.848  Sum_probs=497.4

Q ss_pred             CCCCCCCCCCCCccccccccCCccccchhhHHHHHHHHHHHHHHHhhchhchhhhhhHHHHHHHhCcccccHHHHHHHHH
Q 008767           16 ARPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQ   95 (554)
Q Consensus        16 ~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~   95 (554)
                      .||+||||||+|||+||++ ++ .+..+.+.+|+++||++||+||.+...|++++|+|||+||||||+|||++||+++|+
T Consensus        21 ~R~~~~~~ps~W~~~fl~~-~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~   98 (554)
T 3g4d_A           21 MRPKADFQPSIWGDLFLNC-PD-KNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELE   98 (554)
T ss_dssp             ----CCCCCCTTTTTTTSC-CC----CHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHH
T ss_pred             CCCCCCCCccccccccccC-CC-chhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHH
Confidence            7999999999999999998 43 344667889999999999999975346899999999999999999999999999999


Q ss_pred             HHHhccCCCCCChhhHHHHHHHhhhcCcccchhhhhccccccccccccccccchhhhhHHHhhcccccCchHHHHHHHHH
Q 008767           96 KLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFT  175 (554)
Q Consensus        96 ~i~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~~lL~LyeAs~l~~~gE~iLdea~~ft  175 (554)
                      +||+.......||++|||+|||||||||+||||||++|+|++|+|++++.+|++||||||||||+++|||+|||||+.||
T Consensus        99 ~i~~~~~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs  178 (554)
T 3g4d_A           99 NIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFT  178 (554)
T ss_dssp             HHHHSCCCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHH
T ss_pred             HHHhccCCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence            99975112237999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHhhhcCCccHHHHHHHHccCcccccchhHHHHHhHHhhcCCCcCcHHHHHHHhhchHHHHHhhHHHHHHHHHHH
Q 008767          176 TTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWW  255 (554)
Q Consensus       176 ~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw  255 (554)
                      ++||++.+.++ +++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||++++|||
T Consensus       179 ~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWw  257 (554)
T 3g4d_A          179 THHLSLAVASL-DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWW  257 (554)
T ss_dssp             HHHHHHHSTTC-CTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcc-CchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            99999988765 78899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHhhhcCCCCcCC
Q 008767          256 KDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDT  335 (554)
Q Consensus       256 k~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~rWd~~~~~~  335 (554)
                      |++||.++|||||||++|||||++ |++|||+||.+|+++||+++|++++||+||+|||+|||+.||+||+|||++++++
T Consensus       258 k~~~l~~~L~faRdr~ve~yfw~~-~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~  336 (554)
T 3g4d_A          258 KDLDFQRKLPYARDRVVEGYFWIS-GVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDE  336 (554)
T ss_dssp             HHHCHHHHCTTCCCCHHHHHHHHH-HHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGG
T ss_pred             HHcCCcccCCchHHHHHHHHHHHH-HhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCcccccc
Confidence            999997789999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHH
Q 008767          336 LPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTA  415 (554)
Q Consensus       336 lPe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~  415 (554)
                      ||+|||+||.+|+++++|++.++.++||+++++|++++|+++++||++||+|+++||+||+||||+||++|+|+++++++
T Consensus       337 LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~  416 (554)
T 3g4d_A          337 IPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAIT  416 (554)
T ss_dssp             SCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHH
Confidence            99999999999999999999888899998999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCcchhhhccCCCcchhhHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 008767          416 SFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWK  495 (554)
Q Consensus       416 ~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk  495 (554)
                      +++|||+.+|+++++|+.++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|||+++|+++|+++||
T Consensus       417 ~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK  496 (554)
T 3g4d_A          417 SFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWK  496 (554)
T ss_dssp             HHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhHHHhhccCCCChhHHHHHHHHhhhhhhccccCCCCCCCChh-HHHHHHhhhcCccCC
Q 008767          496 DLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVTF  554 (554)
Q Consensus       496 ~ln~~e~l~~~~~p~~~~~~~~N~aR~~~~~Y~~~~D~~t~~~~-~k~~i~~ll~~pi~~  554 (554)
                      +|| ++|++++++|++|+++++|+||++++||+++ ||||.|+. ||++|++||++|||+
T Consensus       497 ~lN-~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          497 DLN-QEFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HHH-HHHSSSCSSCHHHHHHHHHHHHHHHHHSCC------CCCHHHHHHHHHHHTCCCCC
T ss_pred             HHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCccHHHHHHHHHHhcCCCCC
Confidence            999 9999988999999999999999999999999 99999965 999999999999986
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 554
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-128
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-126
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 4e-69
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 9e-65
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 2e-46
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 3e-31
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  375 bits (964), Expect = e-128
 Identities = 109/328 (33%), Positives = 186/328 (56%), Gaps = 5/328 (1%)

Query: 227 ETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEP 286
             + + AKL+FN++QA HQ+EL D++RWW  L  P KLP+ RDR+VE +FW  VG++   
Sbjct: 3   PLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWA-VGMFEPH 61

Query: 287 KYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNK 346
           ++ + R + + II L ++IDD +D YGT +EL LFT+  KRWDT     LP  M+  Y  
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWG 121

Query: 347 LLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRS 406
           +    ++A  ++ K+   + + Y ++++ +++  YF EAKW   GY PS++EY ++A  S
Sbjct: 122 VHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 181

Query: 407 IAVLPVVTASFLDMGD-IATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIP 465
           +A   +++ ++    +      V + + +   I+  +  I RL DD+ +  FE  RG +P
Sbjct: 182 VASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVP 241

Query: 466 SAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEF 525
             ++CYMK+   SEEEA + +   I   WKD+N   +      P  ++    N+ R+++F
Sbjct: 242 KTIQCYMKETNASEEEAVEHVKFLIREAWKDMN-TAIAAGYPFPDGMVAGAANIGRVAQF 300

Query: 526 IYEDGVDRYTNSYK-MKDQVALVLKDPV 552
           IY  G D +   +    + +A +L +P 
Sbjct: 301 IYLHG-DGFGVQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query554
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.96
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.44
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 84.58
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=8.8e-99  Score=779.18  Aligned_cols=327  Identities=46%  Similarity=0.801  Sum_probs=310.6

Q ss_pred             CcHHHHHHHhhchHHHHHhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHHHh
Q 008767          225 HDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISL  304 (554)
Q Consensus       225 ~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~i  304 (554)
                      +|++||||||||||+||++||+||+.++|||+++||.+++||||||++|||||++ |++|||+||.+|++|||+++++++
T Consensus         1 ~N~~lLelAKlDFN~~Q~~hq~El~~l~rWw~~~~l~~~l~~aRdr~ve~Yfw~~-~~~fEP~~s~~R~~~aK~~~l~ti   79 (328)
T d5easa2           1 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVKTISMISI   79 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHH-HHCCSGGGHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCcccCCchHHHHHHHHHHHH-HhhcChhhHHHHHHHHHHHHHHHh
Confidence            5999999999999999999999999999999999997789999999999999999 999999999999999999999999


Q ss_pred             hhhccccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHH
Q 008767          305 IDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTE  384 (554)
Q Consensus       305 iDD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~E  384 (554)
                      +||+||+|||+||++.||+||+|||.+++++||+|||+||.++++++++++.++.++||++++++++++|++++++|++|
T Consensus        80 ~DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~l~E  159 (328)
T d5easa2          80 VDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVE  159 (328)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCCCHHHHHHHHHHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999899999999999999999999


Q ss_pred             HHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCcchhhhccCCC
Q 008767          385 AKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHI  464 (554)
Q Consensus       385 A~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~  464 (554)
                      |+|+++||+||+||||+||.+|+|+++++++++++||. ++++.++|+.++|+|+++++.|+||+|||+|+++|+++|++
T Consensus       160 A~W~~~g~vPt~eEYl~~~~~s~~~~~l~~~~~~~~g~-~~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s~~~E~~rG~~  238 (328)
T d5easa2         160 STWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQI  238 (328)
T ss_dssp             HHHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHTCTT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHhCCCCCChHhhhcceeeeehHHHHHHHHHHhCCC-CcHHHHHhcccchHHHHHHHHHHHHHhhhHHHHHHhccCCC
Confidence            99999999999999999999999999999999999997 57788999999999999999999999999999999999999


Q ss_pred             cchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHhhhhhhccccCCCCCCCChh-HHHH
Q 008767          465 PSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQ  543 (554)
Q Consensus       465 ~n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk~ln~~e~l~~~~~p~~~~~~~~N~aR~~~~~Y~~~~D~~t~~~~-~k~~  543 (554)
                      +|+|+|||+|+|+|+|||+++++++|+++||+|| +++++++++|++|+++++|+||+++++|++|.||||+|++ ||++
T Consensus       239 ~s~I~cym~e~g~t~EeA~~~i~~~ie~~wk~ln-~e~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt~~~~~~k~~  317 (328)
T d5easa2         239 ATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPH  317 (328)
T ss_dssp             TCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH-HHTSSSCSSCGGGTHHHHHHHHHHHHHTC-----------CCHHH
T ss_pred             CeeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHH
Confidence            9999999999999999999999999999999999 9999999999999999999999999999975599999987 9999


Q ss_pred             HHhhhcCccCC
Q 008767          544 VALVLKDPVTF  554 (554)
Q Consensus       544 i~~ll~~pi~~  554 (554)
                      |++||++|||+
T Consensus       318 i~~ll~epi~~  328 (328)
T d5easa2         318 IINLLVDSIKI  328 (328)
T ss_dssp             HHHHHTCCCCC
T ss_pred             HHHHhccCCcC
Confidence            99999999996
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure