Citrus Sinensis ID: 008778
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 554 | 2.2.26 [Sep-21-2011] | |||||||
| Q03795 | 547 | Uncharacterized membrane | yes | no | 0.851 | 0.862 | 0.223 | 5e-10 | |
| Q9P3K8 | 598 | Probable transporter MCH1 | N/A | no | 0.850 | 0.787 | 0.220 | 1e-07 | |
| Q5AXV1 | 615 | Probable transporter mch1 | no | no | 0.772 | 0.695 | 0.220 | 7e-05 |
| >sp|Q03795|YM30_YEAST Uncharacterized membrane protein YMR155W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR155W PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 120/536 (22%), Positives = 218/536 (40%), Gaps = 64/536 (11%)
Query: 8 TSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GL 66
T+ G FV V +G Y FS Y+ L + ++ + LS IG + G+
Sbjct: 13 TNHFGHLKSFVGGNVVALGAGTPYLFSFYAPQLLSKCHIPVSASSKLSFSLTIGSSLMGI 72
Query: 67 LAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMN 126
LAG+ DR P + LIGS+ + Y L + K + S + + + L + G +
Sbjct: 73 LAGIVVDRSPK-LSCLIGSMCVFIAY--LILNLCYKHEWSSTFLISLSLVLIGYGSVSGF 129
Query: 127 TAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAK-FLFMLAIVPFVV 185
A + NF ++RG GLS +F+ LCS LF ++ F+F++ ++
Sbjct: 130 YASVKCANTNFPQHRGTAGAFPVSLYGLSGMVFSYLCSKLFGENIEHVFIFLMVACGCMI 189
Query: 186 CLG----AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLAL 241
+G IF E AS + E ++++ T +V LY D++ + +
Sbjct: 190 LVGYFSLDIFSNAEGDDASIKEWELQKSR-----ETDDNIVPLYENSNDYIGSPVRS--- 241
Query: 242 IFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVV-EPLLNGETTGTEEVVAV 300
+SP Y+ S N +E++Q+ PLL+ + T+
Sbjct: 242 ----------SSPATYETYAL--SDNFQETSEFFALEDRQLSNRPLLSPSSPHTKYDFED 289
Query: 301 EDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDF--WILFVSFLCGVG------TGLAVM 352
E+T V ++ L +F+++ + F + + + L GVG G V
Sbjct: 290 ENTSKNTVGENSAQKSMRL----HVFQSLKSSTFIGYYIVLGILQGVGLMYIYSVGFMVQ 345
Query: 353 NNMGQIGLALGYVDV----SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWN---A 405
+ L ++ S+ V+L S+ F GR+ SG +S++ +K+ R +WN A
Sbjct: 346 AQVSTPPLNQLPINAEKIQSLQVTLLSLLSFCGRLSSGPISDFLVKKFKAQR-LWNIVIA 404
Query: 406 ASQILMA---VGYILMAVALPG--------SLYIGSIIVGLCYGVRLAVTVPTASELFGL 454
+ + +A + + ++ P ++ + S I G +GV ++ FG
Sbjct: 405 SLLVFLASNKISHDFSSIEDPSLRASKSFKNISVCSAIFGYSFGVLFGTFPSIVADRFGT 464
Query: 455 KYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVI 510
Y ++ +L +F+ +L D +A GN G CY F++
Sbjct: 465 NGYSTLWGVLTTGGVFSVSVFTDILG---RDFKANTGDDDGNCKKGVLCYSYTFMV 517
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q9P3K8|MCH1_NEUCR Probable transporter MCH1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mch-1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 132/598 (22%), Positives = 225/598 (37%), Gaps = 127/598 (21%)
Query: 9 SSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGL-L 67
+++ + L F +A+ +G+ FS Y + ++ TQ E+N LS + L
Sbjct: 52 AASARNLSFASALLSSLCAGSITIFSMYGHIFQERLHYTQFEVNGLSSAASFATYMPVPL 111
Query: 68 AGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQ--------------PLSYWQMCV 113
G DR+ + + +L GYG V R+ L+Y M
Sbjct: 112 LGYMCDRVGPGPLSFVSALFFAAGYGLAAGVYKREADGAALGNGADGEDTGRLAYAAMIT 171
Query: 114 FLCMGGNSTTWMNTAVLVTCIRNFRR--NRGPVSGILKGYVGLSTAIFTDLCSAL----F 167
G T M + + TC +NF R +RG + GLS + L S + F
Sbjct: 172 AFVFIGVGTCSMYMSAVATCAKNFGRGKHRGLALAVPIAAFGLSGMWQSQLGSRVFYERF 231
Query: 168 AD------DPAKFLFMLAIVPFVV-CLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAI 220
AD D F L ++ FVV CLG F L+ +DE EE +
Sbjct: 232 ADGTKGDLDVFHFFIFLGVLLFVVGCLG-TFGLKIVDEEDLIDEAVEE-----------L 279
Query: 221 VVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNR------KRTE 274
+ YL FL SW +R +++
Sbjct: 280 ERSGYLDGSTFLQG------------------------------SWTADRPGYGAIEQSP 309
Query: 275 PDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDF 334
D+E +++P + +EE ++ + V + R L DHT+
Sbjct: 310 LDMESAGILDPSKPDNDSDSEE--EDDNARIKKTWVLNAETRRFL-TDHTM--------- 357
Query: 335 WILFVSFLCGVGTGLAVMNNMGQI-----GLALGYV----DVSIFVSLTSIWGFFGRIIS 385
W + F +G G A +NN+G + L +V + VS+ I R+++
Sbjct: 358 WCFALGFFLMIGPGEAFINNLGTVIKTLYPPHLKFVGEPTSAATHVSIVGITSTLVRLLT 417
Query: 386 GSVSEYF----------IKRAGTPRPIWNAASQ--------ILMAVGYILMAVALPGS-- 425
GS+++ I +GT + S+ + ++VG +A +
Sbjct: 418 GSLTDLLAPSPQARHVQITSSGTLERKRFSLSRVSFLLFFAVTLSVGLATLASGWIQNHG 477
Query: 426 --LYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYL 483
++ S +VG YG ++T + ++G++ + + I+ + LG+ F GL+ +
Sbjct: 478 ERFWVASGLVGAGYGAVFSLTPIIITVIWGVENFATNWGIVAMFPALGA-TFWGLVYSAV 536
Query: 484 YDA---QATPTAGGGNT---CVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNIYTK 535
Y + +A GG C G+ CY F MA + V GL +L A K KN + +
Sbjct: 537 YQSGVEKAASNGQGGEEDQFCYGSECYASAFWAMAASVWVACGL-VLWAWKGKNGWAQ 593
|
Probable transporter. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) |
| >sp|Q5AXV1|MCH1_EMENI Probable transporter mch1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=mch1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 119/540 (22%), Positives = 195/540 (36%), Gaps = 112/540 (20%)
Query: 27 SGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGL-LAGLASDRI-PAPIILLIG 84
+G+ FS Y L T +N TQL +N +S+ I + LAG DR P+P+ L G
Sbjct: 94 AGSITAFSLYGPLLLTRLNYTQLRVNEVSIAAGISMYLPVSLAGYLCDRYSPSPLTLFAG 153
Query: 85 SLEGLVGYGAQWLVVSRKIQPLS------YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR 138
GL GY V P + +W M V G +T M A + TC +NF
Sbjct: 154 IAFGL-GYSLAAFVYKSGPPPDAGGNGWPFWVMVVAFIAIGVATCSMYLAAVTTCAKNFG 212
Query: 139 RNRGP------------VSGILKGYVG---LSTAIFTDLCSALFADDPAKFLFMLAIVPF 183
R + +SG+ + VG L + C + D K+ LAI+
Sbjct: 213 RGKHKGIILAVPIAAFGLSGMWQSQVGTYFLCERLKDSNCGDV---DVYKYFLFLAILLL 269
Query: 184 VVCLGAIFFLR--ETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLAL 241
+ + F LR + +DE EE + + L +F +SE A
Sbjct: 270 TIGVIGTFALRIVDDEEEKYIDEAVEELERSGL-----------LAESEFFRPRSEVQA- 317
Query: 242 IFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVE 301
A +S + V++Q V T +EE+
Sbjct: 318 --------------AYGTFS-------DDHEDNGSVDDQSV---------TISEELREAA 347
Query: 302 DTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA 361
E K+ +L + IF A T+ W L + F G G A +NN+G I
Sbjct: 348 RREKEREEEERRKKNWLLNYETRIFLADHTM--WWLALGFFLVTGPGEAYLNNLGTIVQT 405
Query: 362 LGY-----VDV------SIFVSLTSIWGFFGRIISGSVSEYFIKRA----------GTPR 400
L VD S V++ ++ R+++GS+S+ F A P
Sbjct: 406 LNLDTTAIVDSHPAGLPSTHVTIIALTSTIARLLTGSLSDLFAPTARRHFTVDQETAGPD 465
Query: 401 PIWNAASQILMAVGYIL----------------MAVALPGSLYIGSIIVGLCYGVRLAVT 444
P L + +++ + P ++ + +VGL YG ++
Sbjct: 466 PF-TKQRPALSRLAFLIPSALLLSLGFLLLASPLPTHHPELSHLTTALVGLGYGSIFSLV 524
Query: 445 VPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCY 504
S ++G++ +G + I+ + P G++ Y + A + C G C+
Sbjct: 525 PIIISVVWGVENFGTNWGIVAM-FPAAGAAMWGVIYSRAYQSAADGSPTDDGQCHGWKCF 583
|
Probable transporter. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 554 | ||||||
| 224103219 | 564 | predicted protein [Populus trichocarpa] | 0.989 | 0.971 | 0.764 | 0.0 | |
| 224080606 | 564 | predicted protein [Populus trichocarpa] | 0.990 | 0.973 | 0.765 | 0.0 | |
| 225427985 | 549 | PREDICTED: uncharacterized protein LOC10 | 0.989 | 0.998 | 0.719 | 0.0 | |
| 297798430 | 567 | nodulin family protein [Arabidopsis lyra | 0.949 | 0.927 | 0.705 | 0.0 | |
| 15236224 | 567 | major facilitator family protein [Arabid | 0.944 | 0.922 | 0.709 | 0.0 | |
| 297836364 | 545 | nodulin family protein [Arabidopsis lyra | 0.958 | 0.974 | 0.737 | 0.0 | |
| 356538624 | 538 | PREDICTED: uncharacterized membrane prot | 0.956 | 0.985 | 0.708 | 0.0 | |
| 15227274 | 546 | putative nodulin protein [Arabidopsis th | 0.960 | 0.974 | 0.736 | 0.0 | |
| 217074484 | 552 | unknown [Medicago truncatula] gi|3884984 | 0.947 | 0.951 | 0.734 | 0.0 | |
| 449489670 | 541 | PREDICTED: uncharacterized LOC101216743 | 0.918 | 0.940 | 0.711 | 0.0 |
| >gi|224103219|ref|XP_002312970.1| predicted protein [Populus trichocarpa] gi|222849378|gb|EEE86925.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/564 (76%), Positives = 493/564 (87%), Gaps = 16/564 (2%)
Query: 1 MGF-EVSYTS-SAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVK 58
MG+ + S TS A KWLGFVTAVWVQAISGNNYTFSNYSDALKTLM+LTQLELNNLSV K
Sbjct: 1 MGYLQTSSTSFKATKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMSLTQLELNNLSVAK 60
Query: 59 DIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG 118
D+GKAFGLLAGLASDR+P P+ILLIGS+EGL+GYG QWLVVSR+IQPLSYWQMC+FLC+G
Sbjct: 61 DVGKAFGLLAGLASDRLPTPVILLIGSIEGLIGYGTQWLVVSRRIQPLSYWQMCIFLCLG 120
Query: 119 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFML 178
GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALFADDPAKFL ML
Sbjct: 121 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCAALFADDPAKFLIML 180
Query: 179 AIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSET 238
A++PF VCL AI FLRET PA+T++EEKEE+KYF++ N VA++VA+YL Y F+PN S
Sbjct: 181 AVIPFAVCLTAIVFLRETPPAATIEEEKEESKYFNLFNVVAVIVAVYLLAYSFIPNPSHV 240
Query: 239 LALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVV 298
L+ +FS IL++LLASP+A+P ++FI SWNLNR + + DV E+Q+ EPLL + T E++
Sbjct: 241 LSSVFSLILLVLLASPLAVPAHAFINSWNLNRFKNQEDV-ERQIQEPLLREDKT-QEKIQ 298
Query: 299 AVEDTVVAVVAVEEVK------------RRPVLGEDHTIFEAMWTVDFWILFVSFLCGVG 346
A VE + RRPV+GEDHT+FEAM TVDFWILF+SFLCGVG
Sbjct: 299 EKPAEEAAKAVVERTRAVEEEKAVEVVKRRPVIGEDHTVFEAMSTVDFWILFLSFLCGVG 358
Query: 347 TGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAA 406
TGLAVMNNMGQIGLALGY DVS+FVS+TSIWGFFGRIISG+VSEY+IK+AGTPRP+WNAA
Sbjct: 359 TGLAVMNNMGQIGLALGYADVSLFVSMTSIWGFFGRIISGTVSEYYIKKAGTPRPLWNAA 418
Query: 407 SQILMAVGYILMAVALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILIL 466
SQILMAVGYILMAVALPGSLYIGSI+VG+CYGVRLAV+VPTASELFGLKY+GLIYNILIL
Sbjct: 419 SQILMAVGYILMAVALPGSLYIGSIVVGVCYGVRLAVSVPTASELFGLKYFGLIYNILIL 478
Query: 467 NLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLA 526
NLPLGSFLFSGLLAG LYDAQATPT GGGNTCVGAHCYRLVF+IMA+AC++GFGLD+LL
Sbjct: 479 NLPLGSFLFSGLLAGLLYDAQATPTPGGGNTCVGAHCYRLVFIIMAVACVIGFGLDVLLG 538
Query: 527 AKTKNIYTKIYRSRRSKKSSSSTE 550
+TK IYTKIY SRRSKK +S++
Sbjct: 539 IRTKKIYTKIYMSRRSKKLASASN 562
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080606|ref|XP_002306177.1| predicted protein [Populus trichocarpa] gi|222849141|gb|EEE86688.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/563 (76%), Positives = 493/563 (87%), Gaps = 14/563 (2%)
Query: 1 MGFE--VSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVK 58
MGF S + SA KWLGFVTAVWVQAISGNNYTFSNYSDALK+LMNLTQLELNNLSV K
Sbjct: 1 MGFHQTSSISFSATKWLGFVTAVWVQAISGNNYTFSNYSDALKSLMNLTQLELNNLSVAK 60
Query: 59 DIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG 118
D+GKAFGLLAGLASDR+P P+ILLIGS+EGL+GYG QWLVVS +IQPL YWQMC+FLC+G
Sbjct: 61 DVGKAFGLLAGLASDRLPTPVILLIGSIEGLIGYGTQWLVVSGRIQPLPYWQMCIFLCLG 120
Query: 119 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFML 178
GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALFA DPAKFL ML
Sbjct: 121 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCAALFAYDPAKFLIML 180
Query: 179 AIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSET 238
A++PF VCL AI FLRET PA+T++EEKEE+KYF+I N VA++VA+YL Y F+PN S
Sbjct: 181 AVIPFAVCLTAIVFLRETPPAATIEEEKEESKYFNIFNAVAVIVAVYLMAYGFIPNPSHA 240
Query: 239 LALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTE-EV 297
++L FS IL++LLASP+A PV++FIKSW LNR + + DV E+Q+ EPLL E E +
Sbjct: 241 ISLAFSVILLVLLASPLAAPVHAFIKSWTLNRFKNQADV-ERQIQEPLLIEEKAQEEIQE 299
Query: 298 VAVEDTVVAVV----AVE------EVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT 347
E++ AVV AVE EVKRRPV+GEDHTIFEAM TVDFW+LFVSFLCGVGT
Sbjct: 300 KPAEESASAVVEQPQAVEEEKAAVEVKRRPVIGEDHTIFEAMQTVDFWVLFVSFLCGVGT 359
Query: 348 GLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAAS 407
GLAVMNNMGQIGLALGY DVS+F+S+TSIWGFFGRI+SGSVSEY+IK+AG PRP+WNAAS
Sbjct: 360 GLAVMNNMGQIGLALGYADVSLFISMTSIWGFFGRIVSGSVSEYYIKKAGIPRPLWNAAS 419
Query: 408 QILMAVGYILMAVALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILN 467
QILMAVGYILMAVALPGSLY+GSI+VG+CYGVRLAVTVPTASELFGLKY+GLIYNILILN
Sbjct: 420 QILMAVGYILMAVALPGSLYVGSIVVGICYGVRLAVTVPTASELFGLKYFGLIYNILILN 479
Query: 468 LPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAA 527
LPLGSFLFSGLLAG+LYDA+ATP GGGNTCVGAHCYRLVF+IMA+AC++GFGLD+LL
Sbjct: 480 LPLGSFLFSGLLAGFLYDAEATPAPGGGNTCVGAHCYRLVFIIMAIACVIGFGLDVLLGI 539
Query: 528 KTKNIYTKIYRSRRSKKSSSSTE 550
+TK IY +IY SRRSKK ++++
Sbjct: 540 RTKKIYNRIYMSRRSKKLAAASN 562
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225427985|ref|XP_002277695.1| PREDICTED: uncharacterized protein LOC100260696 [Vitis vinifera] gi|297744630|emb|CBI37892.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/553 (71%), Positives = 464/553 (83%), Gaps = 5/553 (0%)
Query: 1 MGFEVSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDI 60
MGF +S SS+ KWLGFVTAVWVQ+ISGNNYTFSNYSDALK+LM LTQL+LNNLSV KD+
Sbjct: 1 MGFHLSPASSSRKWLGFVTAVWVQSISGNNYTFSNYSDALKSLMALTQLQLNNLSVAKDV 60
Query: 61 GKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGN 120
GKAFGLL+GLASDR+ P++LLIGS+EGLVGYG QWLVVSRKIQPL YWQMC+FLCMGGN
Sbjct: 61 GKAFGLLSGLASDRLSTPMMLLIGSIEGLVGYGVQWLVVSRKIQPLPYWQMCIFLCMGGN 120
Query: 121 STTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAI 180
STTWMNTAVLVTCIRNFR NRGPVSGILKGYVGLSTAIFTDLC+ALFADDPA FL MLAI
Sbjct: 121 STTWMNTAVLVTCIRNFRTNRGPVSGILKGYVGLSTAIFTDLCTALFADDPAIFLLMLAI 180
Query: 181 VPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLA 240
+P +VCL AI FLRE +ST EKEE K+F++ N VA+V+A+YL +D + S L+
Sbjct: 181 IPLLVCLSAILFLREVPSSSTAAGEKEETKFFNLFNIVAVVLAVYLLTFDVTGSHSRILS 240
Query: 241 LIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAV 300
F+ +L+ LLA P++IP+Y ++ +N + + D+E + E LL+ + A
Sbjct: 241 QAFAVVLLFLLACPLSIPLYFMLQDFNRSGSKPSSDIE-GLITETLLSQNSQPEMAAPAS 299
Query: 301 EDTVVAVVAVEEVKR-RPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIG 359
E+ V VV E+KR RP +GEDHTI EA+ T DFWILF SFLCGVGTGLAVMNNMGQ+G
Sbjct: 300 EEKVEPVV---EIKRPRPSIGEDHTIIEAISTTDFWILFASFLCGVGTGLAVMNNMGQMG 356
Query: 360 LALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMA 419
LALGYVDVSIFVSLTSIWGFFGRI+SGSVSEYFI +AGTPRP WNAASQILMAVGY++MA
Sbjct: 357 LALGYVDVSIFVSLTSIWGFFGRILSGSVSEYFIGKAGTPRPFWNAASQILMAVGYVVMA 416
Query: 420 VALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLL 479
+ALPGSLYIGS++VG+CYGVRLAVTVP ASELFGLKYYGLIYNILILNLPLGSFLFSGLL
Sbjct: 417 MALPGSLYIGSVVVGICYGVRLAVTVPIASELFGLKYYGLIYNILILNLPLGSFLFSGLL 476
Query: 480 AGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNIYTKIYRS 539
AG LYDA AT TAGGG TC+G HCYRLVFV+MA++CI+GFGLD+LLA +TKN+Y+KI S
Sbjct: 477 AGLLYDAHATRTAGGGTTCIGPHCYRLVFVVMALSCIIGFGLDVLLAIRTKNVYSKIRAS 536
Query: 540 RRSKKSSSSTESN 552
+RSKK ++ + S
Sbjct: 537 KRSKKPAAPSNSR 549
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798430|ref|XP_002867099.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297312935|gb|EFH43358.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/560 (70%), Positives = 469/560 (83%), Gaps = 34/560 (6%)
Query: 13 KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLAS 72
KWLGFVTAVWVQ+ISGNNYTFSNYS ALK+LMNLTQLELN+LSV KDIGKAFG+LAGLAS
Sbjct: 16 KWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLTQLELNSLSVAKDIGKAFGILAGLAS 75
Query: 73 DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT 132
DR+ P+ILLIG EGL+GYG QWLVVSR IQP+ YWQMCVFLCMGGNSTTWMNTAVLVT
Sbjct: 76 DRLSTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPYWQMCVFLCMGGNSTTWMNTAVLVT 135
Query: 133 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192
CIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF DPA FL +L++VPF VCL A+FF
Sbjct: 136 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFTSDPASFLVLLSVVPFAVCLTAVFF 195
Query: 193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLA 252
LRE P++T DE+ EE+KYF++ N VA+VVA+YLQ YD + K+ ++ F+ IL+ILLA
Sbjct: 196 LREIPPSTTSDEDNEESKYFAVFNIVAVVVAVYLQSYDIIGIKTGAFSIAFASILLILLA 255
Query: 253 SPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAV-- 310
SP+A+P ++FI+S + E DV E ++ EPLL +G+E + VE+T+V A
Sbjct: 256 SPIAVPFHAFIRS----KDHDEQDV-EGRIDEPLLR---SGSE--IEVEETMVGAAAAAD 305
Query: 311 ------------EEV----------KRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348
EEV K+RPVLGE+HTI EAM TVDFW+LFVSFLCGVGTG
Sbjct: 306 NELPPSLKPLNNEEVENHGNVVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCGVGTG 365
Query: 349 LAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQ 408
LAVMNNMGQIGLALGY DVSIFVS+TSIWGFFGRI+SG++SE+FIK+AGTPRP+WNAA+Q
Sbjct: 366 LAVMNNMGQIGLALGYTDVSIFVSMTSIWGFFGRILSGTISEHFIKKAGTPRPLWNAAAQ 425
Query: 409 ILMAVGYILMAVALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNL 468
I+MAVGY+LMA+A+PGSLYIGS++VG+CYGVRLA+TVPTASELFGLKYYGLIYNIL+LNL
Sbjct: 426 IIMAVGYLLMALAMPGSLYIGSMVVGVCYGVRLAITVPTASELFGLKYYGLIYNILVLNL 485
Query: 469 PLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAK 528
PLGSFLFSGLLAG LYDA+ATPT GGGNTCVGAHC+R+VF++M + I+G GLD+LLA +
Sbjct: 486 PLGSFLFSGLLAGLLYDAEATPTPGGGNTCVGAHCFRMVFIVMTLTSIIGVGLDLLLAYR 545
Query: 529 TKNIYTKIYRSRRSKKSSSS 548
TK IY KI+ S++ KKSS++
Sbjct: 546 TKGIYAKIHASKKGKKSSAN 565
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15236224|ref|NP_195221.1| major facilitator family protein [Arabidopsis thaliana] gi|5123712|emb|CAB45456.1| putative protein [Arabidopsis thaliana] gi|7270446|emb|CAB80212.1| putative protein [Arabidopsis thaliana] gi|332661040|gb|AEE86440.1| major facilitator family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/557 (70%), Positives = 467/557 (83%), Gaps = 34/557 (6%)
Query: 13 KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLAS 72
KWLGFVTAVWVQ+ISGNNYTFSNYS ALK+LMNLTQLELN+LSV KD+GKAFG+LAGLAS
Sbjct: 16 KWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLTQLELNSLSVAKDVGKAFGILAGLAS 75
Query: 73 DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT 132
DR+ P+ILLIGS EGL+GYG QWLVVSR IQP+ YWQMCVFLCMGGNSTTWMNTAVLVT
Sbjct: 76 DRLSTPVILLIGSFEGLLGYGVQWLVVSRTIQPIPYWQMCVFLCMGGNSTTWMNTAVLVT 135
Query: 133 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192
CIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF+ DPA FL +L++VPF VCL A+FF
Sbjct: 136 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCNALFSSDPASFLVLLSVVPFAVCLTAVFF 195
Query: 193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLA 252
LRE P++T E+ EE+KYF++ N VA+VVA+YLQ YD + K+ ++ F+ IL+ILLA
Sbjct: 196 LREIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDIIGIKTGAFSIAFASILLILLA 255
Query: 253 SPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVA--- 309
SPVA+P ++FI+S + E DV E ++ EPLL +G+E + VE+T+V A
Sbjct: 256 SPVAVPFHAFIRS----KVHDEQDV-EGRIDEPLLR---SGSE--IEVEETIVGAAAAAD 305
Query: 310 ---------------------VEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348
V K+RPVLGE+HTI EAM TVDFW+LFVSFLCGVGTG
Sbjct: 306 NELPPSLKPLSNEEEENHGTIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCGVGTG 365
Query: 349 LAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQ 408
LAVMNNMGQIGLALGY DVSIFVS+TSIWGFFGRI+SG++SE+FIK+AGTPRP+WNAA+Q
Sbjct: 366 LAVMNNMGQIGLALGYTDVSIFVSMTSIWGFFGRILSGTISEHFIKKAGTPRPLWNAAAQ 425
Query: 409 ILMAVGYILMAVALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNL 468
I+MAVGY+LMA+ALPGSLYIGS++VG+CYGVRLA+TVPTASELFGLKYYGLIYNILILN+
Sbjct: 426 IIMAVGYLLMALALPGSLYIGSMVVGVCYGVRLAITVPTASELFGLKYYGLIYNILILNM 485
Query: 469 PLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAK 528
PLGSFLFSGLLAG LYDA+ATPT GGGNTCVGAHC+R+VF++MA A I+G GLD+LLA +
Sbjct: 486 PLGSFLFSGLLAGLLYDAEATPTPGGGNTCVGAHCFRIVFIVMAFASIIGVGLDLLLAYR 545
Query: 529 TKNIYTKIYRSRRSKKS 545
TK IY KI+ S+++KKS
Sbjct: 546 TKGIYAKIHASKKTKKS 562
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297836364|ref|XP_002886064.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297331904|gb|EFH62323.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/538 (73%), Positives = 463/538 (86%), Gaps = 7/538 (1%)
Query: 1 MGFEVSYTSSAG-KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKD 59
MGF+ S +SS+ KWLGFVTAVWVQAISGNNYTFSNYS ALK+LMNL QLELNNLSV KD
Sbjct: 1 MGFQRSISSSSALKWLGFVTAVWVQAISGNNYTFSNYSGALKSLMNLNQLELNNLSVAKD 60
Query: 60 IGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG 119
+GKAFG+LAGLASDR+P P+ILLIG EGL+GYG QWLVVSR IQP+ YWQMC+FLCMGG
Sbjct: 61 VGKAFGILAGLASDRLPTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPYWQMCIFLCMGG 120
Query: 120 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLA 179
NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF++DPA FL +LA
Sbjct: 121 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFSNDPASFLVLLA 180
Query: 180 IVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETL 239
++PF VCL A+FFLRE +PAS+ EE EE +YF+I N VA+VVA+YLQ YD + K+
Sbjct: 181 VIPFAVCLTAVFFLREISPASSAAEENEETRYFTIFNIVAVVVAVYLQSYDIIGIKTGVF 240
Query: 240 ALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVA 299
++ F+ IL+ LLASP+AIP +SFIKS N E D E ++ EPLL E E V
Sbjct: 241 SVAFASILLFLLASPIAIPFHSFIKSLN----HGEQDDLEGRIQEPLLRSEIAAAEREVV 296
Query: 300 VEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIG 359
V V A V+ K++PVLGEDHTI EA+ TVDFW+LFVSFLCGVGTGLAVMNNMGQIG
Sbjct: 297 VVAAVAAEQEVK--KKKPVLGEDHTIMEAILTVDFWVLFVSFLCGVGTGLAVMNNMGQIG 354
Query: 360 LALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMA 419
LALGY +VSIFVS+TSIWGFFGRI+SG++SEYF+K+AGTPRP+WNAASQILMAVGYILMA
Sbjct: 355 LALGYTNVSIFVSMTSIWGFFGRILSGTLSEYFLKKAGTPRPLWNAASQILMAVGYILMA 414
Query: 420 VALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLL 479
+A+P SLYIGS++VG+CYGVRLA+TVPTASELFGLKYYGLIYNIL+LNLPLGSFLFSGLL
Sbjct: 415 LAVPNSLYIGSMVVGVCYGVRLAITVPTASELFGLKYYGLIYNILVLNLPLGSFLFSGLL 474
Query: 480 AGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNIYTKIY 537
AG+LYDA+ATPT GGGNTCVGAHCYRL+F++MA+A ++G GLD++LA +TK IY KI+
Sbjct: 475 AGFLYDAEATPTPGGGNTCVGAHCYRLIFIVMALASVIGVGLDLVLAYRTKEIYAKIH 532
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538624|ref|XP_003537801.1| PREDICTED: uncharacterized membrane protein YMR155W-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/545 (70%), Positives = 448/545 (82%), Gaps = 15/545 (2%)
Query: 3 FEVSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGK 62
F S S+ KWLGFV AVW+Q ISGNNYTFSNYSDALK+LM+LTQL+LNNLSV KD+GK
Sbjct: 7 FPPSAVSTTSKWLGFVAAVWIQCISGNNYTFSNYSDALKSLMHLTQLQLNNLSVAKDVGK 66
Query: 63 AFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNST 122
AFGLLAGLASDR P ILLIGS+EGL+GYG QWLVVS++IQPL YWQMCVFLCMGGNST
Sbjct: 67 AFGLLAGLASDRFPTWAILLIGSVEGLIGYGTQWLVVSQRIQPLPYWQMCVFLCMGGNST 126
Query: 123 TWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVP 182
TWMNTAVLVT IRNFR NRGPVSGILKG+VGLSTAIFT LCSALFADDP FL ML+++P
Sbjct: 127 TWMNTAVLVTSIRNFRSNRGPVSGILKGFVGLSTAIFTTLCSALFADDPGSFLIMLSVIP 186
Query: 183 FVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALI 242
F VCL +FFLRE P ++ D + EE KYF + N VA+ +AL+L Y F+P+ S ++ +
Sbjct: 187 FAVCLTGVFFLREILPVASADADAEEVKYFGVFNVVAVAMALFLLAYGFIPSPSMLVSRV 246
Query: 243 FSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVED 302
F +L+++L SP+ IPVYS++K DVE Q+V EPLL + +
Sbjct: 247 FVAVLVVMLVSPLGIPVYSYLK----GSFGEGNDVEGQRVKEPLLQ-----------IPE 291
Query: 303 TVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLAL 362
VA E VKR PV+GE+HTI EA+ +VDFWILFVSFLCGVGTGLAVMNNMGQIGLAL
Sbjct: 292 KENEAVAAEIVKRVPVVGEEHTIMEALRSVDFWILFVSFLCGVGTGLAVMNNMGQIGLAL 351
Query: 363 GYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVAL 422
GY DVS+FVSLTSI+GFFGRIISG+VSE+ IK+AGTPRP+WNAASQ+LMAVGYIL+A+A+
Sbjct: 352 GYPDVSLFVSLTSIFGFFGRIISGTVSEFTIKKAGTPRPLWNAASQLLMAVGYILLAMAM 411
Query: 423 PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGY 482
PGSLYIGSI+VG+CYGVRLA+TVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAG
Sbjct: 412 PGSLYIGSILVGMCYGVRLAITVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGI 471
Query: 483 LYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNIYTKIYRSRRS 542
LYD +AT T GGGNTCVG HCYRLVFV+M ACIVGF LDILL+ +TKNIYTKI S++S
Sbjct: 472 LYDMEATTTEGGGNTCVGGHCYRLVFVVMTGACIVGFFLDILLSIRTKNIYTKISMSKKS 531
Query: 543 KKSSS 547
+S+
Sbjct: 532 LATSN 536
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15227274|ref|NP_179257.1| putative nodulin protein [Arabidopsis thaliana] gi|4581109|gb|AAD24599.1| nodulin-like protein [Arabidopsis thaliana] gi|17979283|gb|AAL49867.1| putative nodulin protein [Arabidopsis thaliana] gi|20465250|gb|AAM19945.1| At2g16660/T24I21.7 [Arabidopsis thaliana] gi|23463081|gb|AAN33210.1| At2g16660/T24I21.7 [Arabidopsis thaliana] gi|330251429|gb|AEC06523.1| putative nodulin protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/538 (73%), Positives = 463/538 (86%), Gaps = 6/538 (1%)
Query: 1 MGFEVSYTSSAG-KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKD 59
MGF+ S +SS+ KWLGFVTAVWVQ+ISGNNYTFSNYS ALK+LMNL QLELNNLSV KD
Sbjct: 1 MGFQRSISSSSALKWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLNQLELNNLSVAKD 60
Query: 60 IGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG 119
+GKAFG+LAGLASDR+P P+ILLIG EGL+GYG QWLVVSR IQP+ YWQMC+FLCMGG
Sbjct: 61 VGKAFGILAGLASDRLPTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPYWQMCIFLCMGG 120
Query: 120 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLA 179
NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF++DPA FL +LA
Sbjct: 121 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFSNDPASFLVLLA 180
Query: 180 IVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETL 239
+VPF VCL A+FFLRE PAS+ EE EE +YF+I N VA+VVA+YLQ YD + K+
Sbjct: 181 VVPFAVCLTAVFFLREIPPASSAAEENEETRYFTIFNIVAVVVAVYLQSYDIIGIKTGVF 240
Query: 240 ALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVA 299
++ F+ IL+ LLASP+AIP +SFIKS N E D E ++ EPLL E E+ V
Sbjct: 241 SVAFASILLFLLASPIAIPFHSFIKSLNYG----EQDDLEGRIQEPLLRSEIAAAEKEVI 296
Query: 300 VEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIG 359
V VA E+ +++PVLGEDHTI EA+ TVDFW+LFVSFLCGVGTGLAVMNNMGQIG
Sbjct: 297 VV-AAVAAEEEEKKRKKPVLGEDHTIMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQIG 355
Query: 360 LALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMA 419
LALGY +VSIFVS+TSIWGFFGRI+SG++SEYF+K+AGTPRP+WNAASQILMAVGYILMA
Sbjct: 356 LALGYTNVSIFVSMTSIWGFFGRILSGTLSEYFLKKAGTPRPLWNAASQILMAVGYILMA 415
Query: 420 VALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLL 479
+A+P SLYIGS++VG+CYGVRLA+TVPTASELFGLKYYGLIYNIL+LNLPLGSFLFSGLL
Sbjct: 416 LAVPNSLYIGSMVVGVCYGVRLAITVPTASELFGLKYYGLIYNILVLNLPLGSFLFSGLL 475
Query: 480 AGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNIYTKIY 537
AG+LYDA+ATPT GGGNTCVGAHCYRL+F++MA+A ++G GLD++LA +TK IY KI+
Sbjct: 476 AGFLYDAEATPTPGGGNTCVGAHCYRLIFIVMALASVIGVGLDLVLAYRTKEIYAKIH 533
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217074484|gb|ACJ85602.1| unknown [Medicago truncatula] gi|388498440|gb|AFK37286.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/531 (73%), Positives = 447/531 (84%), Gaps = 6/531 (1%)
Query: 9 SSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLA 68
S+A KW GFV AVW+QAISGNNYTFSNYSDALK+LM+LTQL+LNNLSV KD+GKAFGLLA
Sbjct: 11 STATKWFGFVAAVWIQAISGNNYTFSNYSDALKSLMHLTQLQLNNLSVAKDVGKAFGLLA 70
Query: 69 GLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTA 128
GLASDR+P ILLIGS EGL+GYG QWLVV + IQPL YWQMCVFLCMGGNSTTWMNTA
Sbjct: 71 GLASDRLPTWAILLIGSFEGLIGYGVQWLVVGQYIQPLPYWQMCVFLCMGGNSTTWMNTA 130
Query: 129 VLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188
VLVTCIRNFRRNRGPVSGILKGYVGLSTAIFT+LCSAL ADDPA FL LA++PF+VCL
Sbjct: 131 VLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTNLCSALVADDPAFFLLTLALIPFIVCLT 190
Query: 189 AIFFLRETTPA--STVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGI 246
+FFLRE A +T E+ EE+KYF I N VA+V+A+YL Y F+PN + ++ +F +
Sbjct: 191 GVFFLREVPVAKTTTAAEDSEESKYFGICNAVAVVLAVYLLAYGFVPNANTLVSRVFVAV 250
Query: 247 LIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVA 306
L++LLASP+ IPVY++ K N R DVE Q+V EPLL G+E V D +VA
Sbjct: 251 LLVLLASPLGIPVYAYFK--GRNSGRDGGDVEGQRVREPLLQNGEKGSETTVT--DALVA 306
Query: 307 VVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVD 366
V +K +P +GE+HTI E M ++DFWILFVSFLCGVGTGLAVMNNMGQIGLALGY D
Sbjct: 307 ETEVVVIKGQPAIGEEHTIMEVMKSLDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYTD 366
Query: 367 VSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPGSL 426
VS+FVSLTSIWGFFGRI+SGSVSE+FIK++GTPRP+WNA SQILMAVGYIL+A+A+PGSL
Sbjct: 367 VSLFVSLTSIWGFFGRIVSGSVSEHFIKKSGTPRPLWNAISQILMAVGYILLALAMPGSL 426
Query: 427 YIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDA 486
YIGSIIVG+CYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAG LYD
Sbjct: 427 YIGSIIVGICYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGILYDM 486
Query: 487 QATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNIYTKIY 537
+AT T GGGNTCVG HCYRLVF++MA AC+VGF LDILL+ +TK +Y KIY
Sbjct: 487 EATTTEGGGNTCVGGHCYRLVFIVMAGACVVGFFLDILLSYRTKTVYNKIY 537
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449489670|ref|XP_004158381.1| PREDICTED: uncharacterized LOC101216743 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/524 (71%), Positives = 446/524 (85%), Gaps = 15/524 (2%)
Query: 13 KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLAS 72
KWLGFV+AVWVQAISGNNYTFSNYSDALK+LMNLTQL+LNNLSV KD+GKAFGLLAG+AS
Sbjct: 14 KWLGFVSAVWVQAISGNNYTFSNYSDALKSLMNLTQLQLNNLSVAKDVGKAFGLLAGIAS 73
Query: 73 DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT 132
D+ P +ILLIGS+EGLVGYG QWLVVSR+I PL YWQMC+FLCMGGNSTTWMNTAVLVT
Sbjct: 74 DKFPTWVILLIGSVEGLVGYGTQWLVVSRRISPLPYWQMCIFLCMGGNSTTWMNTAVLVT 133
Query: 133 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192
CIRNFR+NRGPVSGILKGYVGLSTAIFTDLC ALF+ DP+ FL ML++VP VCL A+FF
Sbjct: 134 CIRNFRKNRGPVSGILKGYVGLSTAIFTDLCFALFSSDPSSFLLMLSLVPLAVCLFAMFF 193
Query: 193 LRETTPASTVD--EEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIIL 250
LRE +T+ + ++E+ YFS+ N +A+VVA+YL +DF+ N ++ ++S L+IL
Sbjct: 194 LREIPTQTTITAADTQQESNYFSVFNALAVVVAVYLLCFDFVKNSGRLISQLYSIGLLIL 253
Query: 251 LASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAV 310
L SP+ IP+YSF KSWN R R D+EE V E ++ G AV++ +
Sbjct: 254 LGSPLIIPIYSFFKSWNSIRSRL--DLEEPLVKEEVVTG---------AVKEEAGETAVI 302
Query: 311 EEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIF 370
E+ R PV+GE+HTIFEA+ T+DFW+LFVSFLCGVGTGLAVMNNMGQIGLALGY DVS+F
Sbjct: 303 EQ--RAPVIGEEHTIFEAVRTIDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYADVSMF 360
Query: 371 VSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPGSLYIGS 430
VSLTSIWGFFGRI+SG++SE+F+K+AGTPRP+WNAASQILM VGYILMA+A+PGSLYIGS
Sbjct: 361 VSLTSIWGFFGRILSGTISEHFLKKAGTPRPLWNAASQILMTVGYILMAMAMPGSLYIGS 420
Query: 431 IIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATP 490
+IVG+CYGVRL+VTVPTASELFGLKYYGLIYNILILNLP+GSFLFSGLLAG+LYD +ATP
Sbjct: 421 VIVGICYGVRLSVTVPTASELFGLKYYGLIYNILILNLPIGSFLFSGLLAGFLYDMEATP 480
Query: 491 TAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNIYT 534
T GGGNTC+G HCYR+VF++MA+AC++GF LDI LA +TK +Y+
Sbjct: 481 TEGGGNTCIGGHCYRIVFLVMALACVIGFVLDIWLAFRTKELYS 524
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 554 | ||||||
| TAIR|locus:2059829 | 546 | AT2G16660 [Arabidopsis thalian | 0.960 | 0.974 | 0.665 | 3.6e-192 | |
| TAIR|locus:2116855 | 567 | AT4G34950 [Arabidopsis thalian | 0.969 | 0.947 | 0.638 | 4.4e-187 | |
| TAIR|locus:2078643 | 584 | AT3G01930 [Arabidopsis thalian | 0.440 | 0.417 | 0.374 | 1.2e-83 | |
| TAIR|locus:2174683 | 579 | AT5G14120 [Arabidopsis thalian | 0.467 | 0.447 | 0.337 | 1.1e-80 | |
| TAIR|locus:2198938 | 561 | AT1G80530 "AT1G80530" [Arabido | 0.971 | 0.959 | 0.305 | 6.5e-74 | |
| TAIR|locus:2159752 | 540 | AT5G50520 [Arabidopsis thalian | 0.471 | 0.483 | 0.344 | 9.7e-74 | |
| TAIR|locus:2832385 | 540 | AT5G50630 [Arabidopsis thalian | 0.471 | 0.483 | 0.344 | 9.7e-74 | |
| TAIR|locus:2046238 | 577 | AT2G28120 [Arabidopsis thalian | 0.456 | 0.438 | 0.330 | 2.5e-73 | |
| TAIR|locus:2056103 | 601 | AT2G39210 "AT2G39210" [Arabido | 0.453 | 0.417 | 0.352 | 4.4e-73 | |
| TAIR|locus:2040809 | 525 | AT2G34350 [Arabidopsis thalian | 0.393 | 0.415 | 0.354 | 8.7e-69 |
| TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1862 (660.5 bits), Expect = 3.6e-192, P = 3.6e-192
Identities = 358/538 (66%), Positives = 417/538 (77%)
Query: 1 MGFEVSYTSSAG-KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKD 59
MGF+ S +SS+ KWLGFVTAVWVQ+ISGNNYTFSNYS ALK+LMNL QLELNNLSV KD
Sbjct: 1 MGFQRSISSSSALKWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLNQLELNNLSVAKD 60
Query: 60 IGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG 119
+GKAFG+LAGLASDR+P P+ILLIG EGL+GYG QWLVVSR IQP+ YWQMC+FLCMGG
Sbjct: 61 VGKAFGILAGLASDRLPTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPYWQMCIFLCMGG 120
Query: 120 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLA 179
NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF++DPA FL +LA
Sbjct: 121 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFSNDPASFLVLLA 180
Query: 180 IVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETL 239
+VPF VCL A+FFLRE PAS+ EE EE +YF+I N VA+VVA+YLQ YD + K+
Sbjct: 181 VVPFAVCLTAVFFLREIPPASSAAEENEETRYFTIFNIVAVVVAVYLQSYDIIGIKTGVF 240
Query: 240 ALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDXXXXXXXXPLLNGXXXXXXXXXX 299
++ F+ IL+ LLASP+AIP +SFIKS N E D PLL
Sbjct: 241 SVAFASILLFLLASPIAIPFHSFIKSLNYG----EQDDLEGRIQEPLLRSEIAAAEKEVI 296
Query: 300 XXXXXXXXXXXXXXKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIG 359
K+ PVLGEDHTI EA+ TVDFW+LFVSFLCGVGTGLAVMNNMGQIG
Sbjct: 297 VVAAVAAEEEEKKRKK-PVLGEDHTIMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQIG 355
Query: 360 LALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMA 419
LALGY +VSIFVS+TSIWGFFGRI+SG++SEYF+K+AGTPRP+WNAASQILMAVGYILMA
Sbjct: 356 LALGYTNVSIFVSMTSIWGFFGRILSGTLSEYFLKKAGTPRPLWNAASQILMAVGYILMA 415
Query: 420 VALPGSLYIGSIIVGLCYGVRLAVTVPTASELFXXXXXXXXXXXXXXXXXXXXXXXXXXX 479
+A+P SLYIGS++VG+CYGVRLA+TVPTASELF
Sbjct: 416 LAVPNSLYIGSMVVGVCYGVRLAITVPTASELFGLKYYGLIYNILVLNLPLGSFLFSGLL 475
Query: 480 XXXXXDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNIYTKIY 537
DA+ATPT GGGNTCVGAHCYRL+F++MA+A ++G GLD++LA +TK IY KI+
Sbjct: 476 AGFLYDAEATPTPGGGNTCVGAHCYRLIFIVMALASVIGVGLDLVLAYRTKEIYAKIH 533
|
|
| TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1814 (643.6 bits), Expect = 4.4e-187, P = 4.4e-187
Identities = 354/554 (63%), Positives = 420/554 (75%)
Query: 1 MGFEVSYTSSAG---KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVV 57
MGF S +SS+ KWLGFVTAVWVQ+ISGNNYTFSNYS ALK+LMNLTQLELN+LSV
Sbjct: 1 MGFGTSSSSSSSSALKWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLTQLELNSLSVA 60
Query: 58 KDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCM 117
KD+GKAFG+LAGLASDR+ P+ILLIGS EGL+GYG QWLVVSR IQP+ YWQMCVFLCM
Sbjct: 61 KDVGKAFGILAGLASDRLSTPVILLIGSFEGLLGYGVQWLVVSRTIQPIPYWQMCVFLCM 120
Query: 118 GGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFM 177
GGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF+ DPA FL +
Sbjct: 121 GGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCNALFSSDPASFLVL 180
Query: 178 LAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSE 237
L++VPF VCL A+FFLRE P++T E+ EE+KYF++ N VA+VVA+YLQ YD + K+
Sbjct: 181 LSVVPFAVCLTAVFFLREIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDIIGIKTG 240
Query: 238 TLALIFSGILIILLASPVAIPVYSFIKS-----WNLNRKRTEP--DXXXXXXXXPLLNGX 290
++ F+ IL+ILLASPVA+P ++FI+S ++ + EP + G
Sbjct: 241 AFSIAFASILLILLASPVAVPFHAFIRSKVHDEQDVEGRIDEPLLRSGSEIEVEETIVGA 300
Query: 291 XXXXXXXX-------XXXXXXXXXXXXXXXKRRPVLGEDHTIFEAMWTVDFWILFVSFLC 343
K+RPVLGE+HTI EAM TVDFW+LFVSFLC
Sbjct: 301 AAAADNELPPSLKPLSNEEEENHGTIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLC 360
Query: 344 GVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIW 403
GVGTGLAVMNNMGQIGLALGY DVSIFVS+TSIWGFFGRI+SG++SE+FIK+AGTPRP+W
Sbjct: 361 GVGTGLAVMNNMGQIGLALGYTDVSIFVSMTSIWGFFGRILSGTISEHFIKKAGTPRPLW 420
Query: 404 NAASQILMAVGYILMAVALPGSLYIGSIIVGLCYGVRLAVTVPTASELFXXXXXXXXXXX 463
NAA+QI+MAVGY+LMA+ALPGSLYIGS++VG+CYGVRLA+TVPTASELF
Sbjct: 421 NAAAQIIMAVGYLLMALALPGSLYIGSMVVGVCYGVRLAITVPTASELFGLKYYGLIYNI 480
Query: 464 XXXXXXXXXXXXXXXXXXXXXDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDI 523
DA+ATPT GGGNTCVGAHC+R+VF++MA A I+G GLD+
Sbjct: 481 LILNMPLGSFLFSGLLAGLLYDAEATPTPGGGNTCVGAHCFRIVFIVMAFASIIGVGLDL 540
Query: 524 LLAAKTKNIYTKIY 537
LLA +TK IY KI+
Sbjct: 541 LLAYRTKGIYAKIH 554
|
|
| TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 469 (170.2 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 94/251 (37%), Positives = 152/251 (60%)
Query: 13 KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLAS 72
+WL FV A+W+Q+ +G Y F + S +K+ +N Q +L+ L V KD+G + G LAG S
Sbjct: 16 RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQLSRLGVAKDLGDSVGFLAGTLS 75
Query: 73 DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT 132
+ +P LL+GS++ LVGYG WL+V+ + L W MC+ + +G N T+ NTA LV+
Sbjct: 76 EILPLWAALLVGSVQNLVGYGWVWLIVTGRAPILPLWAMCILIFVGNNGETYFNTAALVS 135
Query: 133 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192
++NF ++RGPV GILKG+ GL AI + + + + + D A +FM+A+ P VV + +FF
Sbjct: 136 GVQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSDRASLIFMVAVAPSVVVVPLMFF 195
Query: 193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQ----VYDFLPNKSETLALIFSGILI 248
+R + +A F++I V I++A YL V DF+ + S ++ + F+ +L
Sbjct: 196 IRPVGGHRQI--RSSDATSFTVIYAVCILLAAYLMAVMLVEDFI-DLSHSIIIAFTVVLF 252
Query: 249 ILLASPVAIPV 259
+L P+ IP+
Sbjct: 253 AILLVPIFIPI 263
|
|
| TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 446 (162.1 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
Identities = 90/267 (33%), Positives = 154/267 (57%)
Query: 5 VSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF 64
VS+ ++ +WL FV A+W+Q+ +G Y F + S +K+ +N Q EL+ L V KD+G +
Sbjct: 10 VSFINN--RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKELSRLGVAKDLGDSV 67
Query: 65 GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTW 124
G +AG S+ +P LL+G+++ L+GYG WL+V+ + L W MCV + +G N T+
Sbjct: 68 GFIAGTLSEILPLWAALLVGAVQNLIGYGWVWLIVTGRAPILPLWAMCVLIFVGNNGETY 127
Query: 125 MNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV 184
NT LV+ ++NF ++RGPV GILKG+ GL AI + + + + + +PA + M+A+ P V
Sbjct: 128 FNTGALVSGVQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSNPASLILMVAVTPAV 187
Query: 185 VCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNK---SETLAL 241
V + +FF+R + + F+ I V +++A YL + + S +
Sbjct: 188 VVVCLMFFIRPVGGHKQI--RPTDGASFTFIYGVCLLLAAYLMSVMLIQDLVVVSHNVIT 245
Query: 242 IFSGILIILLASPVAIPVY-SFIKSWN 267
+F+ +L ++L P+ +P+ SF N
Sbjct: 246 VFTIVLFVILVVPILVPIMTSFFTETN 272
|
|
| TAIR|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 172/563 (30%), Positives = 278/563 (49%)
Query: 8 TSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLL 67
+ S W+G A WVQ +G+ TF YS ALK+++ +Q ++ L V D+G+ GLL
Sbjct: 8 SGSRPPWVGLAAAAWVQVSAGSGSTFPLYSSALKSVLGFSQQQVTILGVACDLGENMGLL 67
Query: 68 AGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNT 127
G AS+++P +LLIG+ +G+G WL VS+ + L +W + V L + NS +W T
Sbjct: 68 PGYASNKLPPWSMLLIGASSCFLGFGVLWLSVSQIVLGLPFWLLFVALALATNSNSWFGT 127
Query: 128 AVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAI-VPFVVC 186
A LVT +RNF +RGPV+G+LKGY+G+S A FT L S + L L + +P V+C
Sbjct: 128 ASLVTNMRNFPMSRGPVAGLLKGYIGISGAAFTVLFSMVLHHSAMDLLLFLTVGIP-VIC 186
Query: 187 LGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNK---SETLALIF 243
L ++F+R PA+ E+ E YF+ + +I+ A YL V L L +
Sbjct: 187 LTVMYFIRPCIPAT--GEDPSEPMYFAFLLVTSILFAAYLVVTTVLSEVFILPSILKYVL 244
Query: 244 SGILIILLASPVAIPVYSFI-----------KSWNLNRKRTEPDXXXXXXXXPLLN-GXX 291
I+++LL SP+A+P+ + S NL ++ + N G
Sbjct: 245 VAIMVLLLLSPLAVPIKMTLFRSNAKSSPLGSSDNLAKEEGTHEEPLLTPSTSASNLGPI 304
Query: 292 XXXXXXXXXXXXXXXXXXXXXXKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAV 351
KR+P GED + DFW+L+ + G+G+G+ V
Sbjct: 305 FEGDDESDMEILLAEAEGAVKKKRKPRRGEDFKFGQVFVKADFWLLWFVYFLGMGSGVTV 364
Query: 352 MNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILM 411
NN+ QIG A G D +I + L S + F GR+ SG++SE+F++ PR +W A+Q++M
Sbjct: 365 SNNLAQIGFAFGIKDTTILLCLFSFFNFIGRLASGAISEHFVRSRTLPRTLWMGAAQLVM 424
Query: 412 AVGYILMAVALPGSLYIGSIIVGLCYGVRLAVTVPTASELFXXXXXXXXXXXXXXXXXXX 471
++L A+A+ ++Y+ + ++G+C G + +++ T SELF
Sbjct: 425 VFTFLLFAMAIDHTIYVATALIGICMGFQF-LSIATISELFGLRHFGINFNFILLGNPLG 483
Query: 472 XXXXXXXXXXXXXDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKN 531
D +A G TC+G C+R+ F+++A C +G L I+L + +
Sbjct: 484 ATIFSAILAGYIYDKEADKQ--GKMTCIGPDCFRVTFLVLAGVCGLGTLLSIILTVRIRP 541
Query: 532 IYTKIYXXXXXXXXXXXTESNGH 554
+Y +Y +S GH
Sbjct: 542 VYQALYASGSFRLQ---PQSTGH 561
|
|
| TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
Identities = 92/267 (34%), Positives = 150/267 (56%)
Query: 13 KWLGFVTAVWVQAISGNNYTFS-NYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLA 71
+WL FV A+WVQ+++G Y F + S A+KT + Q ++ L V K++G A G ++G
Sbjct: 16 RWLVFVCAMWVQSVAGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDAIGFVSGAL 75
Query: 72 SDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLV 131
S+ P+ ++LL+G+ + L GYG WLVV+ ++ L W + V + +G N T+ NTA LV
Sbjct: 76 SEVSPSWVVLLVGATQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGETYYNTASLV 135
Query: 132 TCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF 191
+CI NF +RGPV GILKG+ GLS AI T + + + M+A+ P VV L +F
Sbjct: 136 SCIHNFPESRGPVVGILKGFSGLSGAILTQVYLMFNPSHDSSVILMVALGPPVVVLALLF 195
Query: 192 FLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQ---VYDFLPNKSETLALIFSGILI 248
+R + + ++ ++ +I +V+A+YL V + + ++T+ IL+
Sbjct: 196 IVRPVERSCRTNLRSDDLRFLAIYG-FCVVLAVYLLGLLVLQSVFDMTQTIITTSGAILV 254
Query: 249 ILLASPVAIPVYS-FIKSWNLNRKRTE 274
I + PV +P S FI N+ + E
Sbjct: 255 IFMVVPVLVPFSSVFISGNNVTSVKPE 281
|
|
| TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
Identities = 92/267 (34%), Positives = 150/267 (56%)
Query: 13 KWLGFVTAVWVQAISGNNYTFS-NYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLA 71
+WL FV A+WVQ+++G Y F + S A+KT + Q ++ L V K++G A G ++G
Sbjct: 16 RWLVFVCAMWVQSVAGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDAIGFVSGAL 75
Query: 72 SDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLV 131
S+ P+ ++LL+G+ + L GYG WLVV+ ++ L W + V + +G N T+ NTA LV
Sbjct: 76 SEVSPSWVVLLVGATQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGETYYNTASLV 135
Query: 132 TCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF 191
+CI NF +RGPV GILKG+ GLS AI T + + + M+A+ P VV L +F
Sbjct: 136 SCIHNFPESRGPVVGILKGFSGLSGAILTQVYLMFNPSHDSSVILMVALGPPVVVLALLF 195
Query: 192 FLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQ---VYDFLPNKSETLALIFSGILI 248
+R + + ++ ++ +I +V+A+YL V + + ++T+ IL+
Sbjct: 196 IVRPVERSCRTNLRSDDLRFLAIYG-FCVVLAVYLLGLLVLQSVFDMTQTIITTSGAILV 254
Query: 249 ILLASPVAIPVYS-FIKSWNLNRKRTE 274
I + PV +P S FI N+ + E
Sbjct: 255 IFMVVPVLVPFSSVFISGNNVTSVKPE 281
|
|
| TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 403 (146.9 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
Identities = 86/260 (33%), Positives = 138/260 (53%)
Query: 12 GKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLA 71
G+W + + A +G Y F YS +K+ + Q LN L KD+G G+L+GL
Sbjct: 16 GRWFMVFASFLIMACAGATYLFGTYSKDIKSTLGYDQTTLNLLGFFKDLGANVGVLSGLI 75
Query: 72 SDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLV 131
++ P +L IGS VGY WL V+ K+ WQMC+++C+G NS + NT LV
Sbjct: 76 AEVTPTWFVLTIGSAMNFVGYFMIWLTVTGKVAKPKVWQMCLYICIGANSQNFANTGALV 135
Query: 132 TCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF 191
TC++NF +RG + G+LKGYVGLS AIFT L A++ D + ++A +P V L ++
Sbjct: 136 TCVKNFPESRGVMLGLLKGYVGLSGAIFTQLYFAIYGHDSKSLILLIAWLPAAVSLVFVY 195
Query: 192 FLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNK---SETLALIFSGILI 248
+RE V + E + ++ + ++I +AL+L + + S+ + I
Sbjct: 196 LIREK---KVVRQRNELSVFYQFLY-ISIFLALFLMAMNIAEKQVHFSKAAYAASATICC 251
Query: 249 ILLASPVAIPVYSFIKSWNL 268
LL P+ + V ++ WN+
Sbjct: 252 ALLFVPLTVSVKQELEVWNM 271
|
|
| TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 402 (146.6 bits), Expect = 4.4e-73, Sum P(2) = 4.4e-73
Identities = 91/258 (35%), Positives = 136/258 (52%)
Query: 12 GKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLA 71
G+W F ++ + + +G Y F YS +K + Q LN LS KD+G G+LAGL
Sbjct: 20 GRWFMFFGSLLIMSTAGATYMFGIYSGDIKETLGYDQTTLNLLSFFKDLGANVGVLAGLL 79
Query: 72 SDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLV 131
++ P ILLIG++ GY WL V+ +I W MC+++C+G NS ++ NT LV
Sbjct: 80 NEVTPPWFILLIGAILNFFGYFMIWLAVTERISKPQVWHMCLYICVGANSQSFANTGSLV 139
Query: 132 TCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF 191
TC++NF +RG V GILKGYVGLS AI T L A + +D + + M+ +P +V
Sbjct: 140 TCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGEDTKELILMIGWLPAIVSFA--- 196
Query: 192 FLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSG---ILI 248
FLR T V + E K F +++ +A +L V + S F G ++I
Sbjct: 197 FLR-TIRIMKVKRQTNELKVFYNFLYISLGLATFLMVVIIINKLSGFTQSEFGGSAAVVI 255
Query: 249 ILLASPVAIPVYSFIKSW 266
+LL P+ + + K W
Sbjct: 256 VLLLLPIIVVILEEKKLW 273
|
|
| TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 79/223 (35%), Positives = 123/223 (55%)
Query: 316 RPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGY--VDVSIFVSL 373
+ V+ D + EA+ T +FW+LFV+ +CG+G+GLA +NN+ Q+G +L Y V ++ VSL
Sbjct: 299 KDVMTNDMNVLEAICTTNFWLLFVAMICGMGSGLATINNIRQMGESLRYSTVQLNSLVSL 358
Query: 374 TSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPGSLYIGSIIV 433
SIW F GR SG +S+ ++ G PRP++ A + LMA+G+I+MA L GSLYIGS++V
Sbjct: 359 WSIWNFLGRFGSGYISDTYLHSHGWPRPVFMAITLGLMAIGHIVMASGLLGSLYIGSLLV 418
Query: 434 GLCYGVRLAVTVPTASELFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAQATPTAG 493
GL YG + ++ SE+F D A+
Sbjct: 419 GLAYGSQWSLMPTITSEIFGVLHMGTIFYTISIASPVGSYFFSVKVIGYLYDKVASED-- 476
Query: 494 GGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNIYTKI 536
++C G HC+R F+IMA ++G + ++L +TK Y +
Sbjct: 477 -DHSCYGNHCFRTSFLIMAAMALLGSLVALVLLLRTKKFYATL 518
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 554 | |||
| pfam06813 | 248 | pfam06813, Nodulin-like, Nodulin-like | 2e-93 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 6e-11 | |
| PTZ00207 | 591 | PTZ00207, PTZ00207, hypothetical protein; Provisio | 2e-10 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.003 |
| >gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like | Back alignment and domain information |
|---|
Score = 285 bits (731), Expect = 2e-93
Identities = 111/250 (44%), Positives = 161/250 (64%), Gaps = 5/250 (2%)
Query: 13 KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLAS 72
+WLG V A+W+Q+ +G NY FS YS ALK+ + +Q++LN L V KD+GK FG L+GLA+
Sbjct: 1 RWLGLVAAIWIQSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAA 60
Query: 73 DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT 132
+ +P ++LL+G+ G VGYG QWL V+ KI L YW +C+ +C+ GNS W NTA LVT
Sbjct: 61 EYLPPWVVLLVGAAMGFVGYGVQWLAVTGKIPGLPYWLLCLAICLAGNSICWFNTASLVT 120
Query: 133 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192
CIRNF +RG V GILKGY GLS AI+T L +A+F +D + L + A+VP VV L A++F
Sbjct: 121 CIRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYF 180
Query: 193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNK---SETLALIFSGILII 249
+R E++ E+ F + N +++ +A+YL L S I+++
Sbjct: 181 IRPCPGKVG--EQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVL 238
Query: 250 LLASPVAIPV 259
LL P+A+P+
Sbjct: 239 LLLVPLAVPI 248
|
This family represents a conserved region within plant nodulin-like proteins. Length = 248 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 6e-11
Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 16/181 (8%)
Query: 311 EEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--S 368
V +D+T++E + T FW+L++SF +GL ++ G +LG D
Sbjct: 184 LIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLV 243
Query: 369 IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIW-----NAASQILMAVGYILMAVALP 423
+ VS++SI+ GR G++S+ G + + +A M +L V
Sbjct: 244 LAVSISSIFNGGGRPFLGALSDKI----GRQKTMSIVFGISAVGMAAMLFIPMLNDVLFL 299
Query: 424 GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYL 483
++ +V +G +++ S++FG Y L + +F GL+A +
Sbjct: 300 ATV----ALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAG-IFGGLIASHA 354
Query: 484 Y 484
Sbjct: 355 L 355
|
This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 131/542 (24%), Positives = 208/542 (38%), Gaps = 94/542 (17%)
Query: 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRI-PAPI------ILLI 83
Y F+ S A++ NLTQ +L+ ++ V F L D + P PI + +
Sbjct: 44 YAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCL 103
Query: 84 GSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGP 143
G+L L Q ++ ++ Y + CM + +VT + F NRG
Sbjct: 104 GTL--LFALTFQEVIEGSVVRLSVYNGLMTLGCM------LFDLGAVVTVLSVFPSNRGA 155
Query: 144 VSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPAST-- 201
V I+K + GL +AI + A F+D+ + + F L VV + AI F+R T
Sbjct: 156 VVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGY 215
Query: 202 ----VDEE-------------KEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFS 244
+DEE K++A + + I++ L + FLP + +A +
Sbjct: 216 QEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIV----FLPLQGALVAYLKL 271
Query: 245 G-----------ILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTG 293
G I++ ++ +A P+ +F + R + D + ++ VE
Sbjct: 272 GSNFKVGFAVTVIVLTVIFPFMAFPLTTF----DGKRPHDDSDGKAKEHVE--------A 319
Query: 294 TEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMN 353
EEV A ED VV V+ + P E T E + T W L S C VG ++
Sbjct: 320 GEEVSAAEDKVVE-TDVDYIA--PQFQE--TFIEGLKTARLWCLLWSIFCCVGAHFVIIF 374
Query: 354 NMGQIGLALG--YVDVSIFVSLTSIWGF---FGRIISGSVSEYFIKRAGTPR-PIWNAAS 407
N I AL D ++ LT + G GR+ + KR R PI +
Sbjct: 375 NARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPI--TIA 432
Query: 408 QILMAVGYILM--------AVALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGL 459
+ +V I M ALP +I + G +A T+ + K
Sbjct: 433 LFIPSVCIITMLTLFLTLPKAALPLPYFIAAFANGF-----MAATIALVTRTIFAKDPAK 487
Query: 460 IYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGF 519
YN L L + + LL G Y QA G + C C V+M +A ++G
Sbjct: 488 HYNFCFLGSVLSAIFLNRLLYGEWYTQQADKL--GQDVCTERVC-----VVMPLAFLLGL 540
Query: 520 GL 521
Sbjct: 541 SF 542
|
Length = 591 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 25/192 (13%)
Query: 334 FWILFVSFLCGVGTGLAVMNNMGQIG---LALGYVDVSIFVSLTSIWGFFGRIISGSVSE 390
+L ++F ++ + L L + + +SL + G G ++ G +S+
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236
Query: 391 YFIKRAGTPRPIWNAASQILMAVGYILMAVAL-PGSLYIGSIIVGLCYGVRLAVTVPTAS 449
R + +L A+G +L+A+A L + +++G G + AS
Sbjct: 237 RLG-----RRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLAS 291
Query: 450 ELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFV 509
EL + G + LG L LLAG L D Y VF+
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGP-LLAGLLLDTGG---------------YGGVFL 335
Query: 510 IMAMACIVGFGL 521
I+A ++ L
Sbjct: 336 ILAALALLAALL 347
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 554 | |||
| PTZ00207 | 591 | hypothetical protein; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.98 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.98 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.97 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.97 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.97 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.97 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.97 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.97 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.97 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.97 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.97 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.97 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.97 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.97 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.97 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.97 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.97 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.96 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.96 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.96 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.96 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.96 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.96 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.96 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.96 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.96 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.96 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.96 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.96 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.96 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.95 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.95 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.95 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.95 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.95 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.95 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.95 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.95 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.95 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.94 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.94 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.94 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.94 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.94 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.94 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.94 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.94 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.94 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.94 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.93 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.93 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.93 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.93 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.93 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.93 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.93 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.93 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.92 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.92 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.92 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.92 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.92 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.92 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.92 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.92 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.9 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.9 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.9 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.89 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.89 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.89 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.89 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.89 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.88 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.87 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.87 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.87 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.87 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.86 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.86 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.85 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.82 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.81 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.79 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.79 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.78 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.78 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.77 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.76 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.76 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.76 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.74 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.74 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.71 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.64 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.63 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.62 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.6 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.4 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.4 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.33 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.32 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.32 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.31 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.31 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.3 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.3 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.29 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.29 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.29 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.28 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.28 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.28 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.27 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.27 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.26 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.26 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.26 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.25 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.25 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.24 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.24 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.23 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.23 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.22 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.21 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.21 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.21 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.2 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.2 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.19 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.19 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.19 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.19 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.19 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.19 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.19 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.19 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.18 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.17 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.17 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.16 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.16 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.15 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.15 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.15 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.14 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.14 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.12 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.12 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.12 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.11 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.11 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.11 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.1 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.1 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.09 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.09 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.08 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.08 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.08 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.06 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.06 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.06 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.05 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.05 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.04 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.04 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.02 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.02 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.99 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.98 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.95 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.95 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.93 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.9 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.88 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.88 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.87 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.86 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.85 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.84 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.84 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.83 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.83 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.81 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.8 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.79 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.79 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.77 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.76 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.76 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.72 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.71 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.69 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.66 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.65 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.63 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.62 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.62 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.6 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.55 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.53 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.52 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.51 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.48 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.48 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.47 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.38 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.36 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.34 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.28 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.23 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.2 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.19 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.18 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.17 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.16 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.13 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.11 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.04 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.03 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.99 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.97 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.96 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.94 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.93 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.9 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 97.89 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.89 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.88 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.84 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.8 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.75 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.75 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.74 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.73 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.64 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.45 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.43 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.25 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.2 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.17 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.14 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.13 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.06 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.87 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.68 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.57 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.49 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 96.38 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.33 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.2 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.86 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.82 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.45 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 95.25 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 95.18 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 95.08 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.73 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 94.7 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.36 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 93.32 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 89.54 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 87.54 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 87.28 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 86.25 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 85.84 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 84.81 |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=388.76 Aligned_cols=506 Identities=21% Similarity=0.272 Sum_probs=391.0
Q ss_pred ccchhHHHHHHHHHHHhhccchhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhhhhhhhhhcccCCchHHHHHHHHHHH
Q 008778 10 SAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGL 89 (554)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~g~~l~~ 89 (554)
+.+||..++.++++..+.+..|.++++.|++++++|+|.+|++++.+.......+++++|++.||+|+|++++++.++++
T Consensus 23 e~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~ 102 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC 102 (591)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 46899999999999988899999999999999999999999999766544444557789999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccCCCccchHhhHhhhhhhHHHHHHHHHhhcCC
Q 008778 90 VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFAD 169 (554)
Q Consensus 90 ~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~ 169 (554)
+++++++++....+. +++++++++|+++|+|.+..++.+..++.+|||++||+++|+..++.++|+++.+++...++..
T Consensus 103 iG~ll~ala~~~~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~ 181 (591)
T PTZ00207 103 LGTLLFALTFQEVIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSD 181 (591)
T ss_pred HHHHHHHHHhccccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987544332 4799999999999999999999999999999999999999999999999999999988888776
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhccccCCCCCc--c--hhhhhh-----------------hhhHhHHHHHHHHHHHHHh
Q 008778 170 DPAKFLFMLAIVPFVVCLGAIFFLRETTPASTV--D--EEKEEA-----------------KYFSIINTVAIVVALYLQV 228 (554)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ 228 (554)
+++.+++++++++.++.++..++++.+|++... + .+.++. +++.....+++.+++|+.+
T Consensus 182 ~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~ 261 (591)
T PTZ00207 182 NTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPL 261 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHH
Confidence 666777777888888888888888877654311 0 011111 2566667777888888888
Q ss_pred HhcCCCCcch--h-hhHHHHHHH-HHhhhc-ccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccch
Q 008778 229 YDFLPNKSET--L-ALIFSGILI-ILLASP-VAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDT 303 (554)
Q Consensus 229 ~~~~~~~~~~--~-~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (554)
.....+..+. . .....++++ +.+..| +++++++ ..+ .++++ ++|.++.+. . +.+.+.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~--~~~-~~~~~----~~~~~~~~~-------~-~~~~~~~~- 325 (591)
T PTZ00207 262 QGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTT--FDG-KRPHD----DSDGKAKEH-------V-EAGEEVSA- 325 (591)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHH--hcc-CCcCC----Ccccccccc-------c-cccccccc-
Confidence 7777653332 2 233334344 555566 7777654 111 11111 001100000 0 00000000
Q ss_pred hhhHHHHH-Hhh-cCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhHh-CCC-cc--hh-hHHHHHH
Q 008778 304 VVAVVAVE-EVK-RRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLAL-GYV-DV--SI-FVSLTSI 376 (554)
Q Consensus 304 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~-~~--~~-~~~~~~~ 376 (554)
++.+... +.+ +.|+. ..+++|.+++.+||++++.++|..+....+++++.++.+.+ |++ +. .. .+++.++
T Consensus 326 -~~~~~~~~~~~~~~P~~--~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si 402 (591)
T PTZ00207 326 -AEDKVVETDVDYIAPQF--QETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGV 402 (591)
T ss_pred -cccccccccccCCCCCC--cchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhH
Confidence 0000000 011 11332 33899999999999999999999999999999999999999 883 33 33 6899999
Q ss_pred HHhHhhHHhhcchhhHhhhc---CCCchhHHHHHHHHHHHHHHHHHhccC-chhHHHHHHHHhhhcccccchHHHHHHhh
Q 008778 377 WGFFGRIISGSVSEYFIKRA---GTPRPIWNAASQILMAVGYILMAVALP-GSLYIGSIIVGLCYGVRLAVTVPTASELF 452 (554)
Q Consensus 377 ~~~~g~~~~G~l~Dr~g~r~---~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~ 452 (554)
++.+||+..|.++....+|+ +++|+.++.+..+ +.++.+++....+ ..+++..++.|+++|..+++.++.+.|+|
T Consensus 403 ~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selF 481 (591)
T PTZ00207 403 GSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIF 481 (591)
T ss_pred HHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence 99999999999985544444 2789999988888 7777777766666 68999999999999999999999999999
Q ss_pred CCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhhhh
Q 008778 453 GLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNI 532 (554)
Q Consensus 453 ~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~~~ 532 (554)
+ |+.|+-+.+..+...+|+.+++..+.|.+||+.+.+. ++..|.|++||+.+|++++++++++++....+..|+|+.
T Consensus 482 g-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~--~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~ 558 (591)
T PTZ00207 482 A-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKL--GQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRRL 558 (591)
T ss_pred c-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHHH
Confidence 9 9999999999999999999998999999999997542 456899999999999999999999999999999999988
Q ss_pred HHHHHhh
Q 008778 533 YTKIYRS 539 (554)
Q Consensus 533 ~~~~~~~ 539 (554)
+++..++
T Consensus 559 y~~~~~~ 565 (591)
T PTZ00207 559 CLKALEE 565 (591)
T ss_pred HHHHHHH
Confidence 8755443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=279.74 Aligned_cols=402 Identities=16% Similarity=0.092 Sum_probs=296.4
Q ss_pred cchhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHH
Q 008778 11 AGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG 88 (554)
Q Consensus 11 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~ 88 (554)
+.||.+++..++-..+...+ -.+++.+|+++++.++|.+|++.+.+.+.+.+.+ ..+.|.++||.++|+.+..|+++.
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 34555666555555554444 7899999999999999999999988888888865 799999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHH--Hh
Q 008778 89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLC--SA 165 (554)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~--~~ 165 (554)
++..++.+++ +|.+.+.++.++.|.-+|+..|++..++..|||+ +||+..++.+++.++|+++.+++. +.
T Consensus 105 ai~nil~Gfs-------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~ 177 (448)
T COG2271 105 AIVNILFGFS-------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAF 177 (448)
T ss_pred HHHHHHHhhh-------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHH
Confidence 9999999998 8999999999999999999999999999999985 699999999999999999999988 66
Q ss_pred hcCCChHHHHHHHHHHHH-HHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHH
Q 008778 166 LFADDPAKFLFMLAIVPF-VVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFS 244 (554)
Q Consensus 166 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (554)
+....+|+..|+...+.+ +++++..+..++.|+..
T Consensus 178 ~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~-------------------------------------------- 213 (448)
T COG2271 178 FAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE-------------------------------------------- 213 (448)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc--------------------------------------------
Confidence 666667777776665444 44555544444444321
Q ss_pred HHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCch
Q 008778 245 GILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHT 324 (554)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (554)
...+.++..++|... . +++ +++++......-
T Consensus 214 -----------------------------GLP~ie~~~~d~~e~--------~-~~~-----------~~~~~ls~~~i~ 244 (448)
T COG2271 214 -----------------------------GLPPIEEYRGDPLEI--------Y-EEE-----------KENEGLTAWQIF 244 (448)
T ss_pred -----------------------------CCCCHHHhhcCchhh--------h-hhh-----------ccCCCccHHHHH
Confidence 111111111111000 0 000 000000011122
Q ss_pred HHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCc--chhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCch
Q 008778 325 IFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRP 401 (554)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~--~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~ 401 (554)
.+.+++||..|.++++..+.+..-+.+..|.|.|+.| .|++. +....+++-++++.|.++.||++||+-+.++.
T Consensus 245 ~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~--- 321 (448)
T COG2271 245 VKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG--- 321 (448)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc---
Confidence 3567899999999999998888899999999999866 68874 45588899999999999999999997543322
Q ss_pred hHHHHHHHHHHHHHHHHHh-c-c-CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhh-hHHHhhh
Q 008778 402 IWNAASQILMAVGYILMAV-A-L-PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPL-GSFLFSG 477 (554)
Q Consensus 402 ~~~~~~~~l~~~~~~l~~~-~-~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~l~~p 477 (554)
....++.++..+++..+.. + + .....+.++++|+...+..-+....+.|..|++..|++.|+.....++ |..+ +.
T Consensus 322 p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~-a~ 400 (448)
T COG2271 322 PMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAAL-AG 400 (448)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHh-cC
Confidence 1223333333333333322 1 1 234556777888875554467777889999999999999999999999 5555 88
Q ss_pred hHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 008778 478 LLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKN 531 (554)
Q Consensus 478 ~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~~ 531 (554)
...|++.|..| |...|++..+.++++.++.+.....+++
T Consensus 401 ~~~g~i~d~~g---------------W~g~Fi~~~~~a~l~~lll~~~~~~~~~ 439 (448)
T COG2271 401 LPLGYIADTWG---------------WDGGFIVLSIAALLAILLLLPVWNAEER 439 (448)
T ss_pred CcceeeEecCC---------------CcchHHHHHHHHHHHHHHHHHHHhhcch
Confidence 89999999976 9999999998888887776666554433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=288.16 Aligned_cols=367 Identities=20% Similarity=0.284 Sum_probs=278.5
Q ss_pred hhHHHHHHHHHHHhhccchhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHH
Q 008778 13 KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVG 91 (554)
Q Consensus 13 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~ 91 (554)
+|..++..+...+..+..+.++.+.|++.+++|+|.++.+++.+.+.++..+ +++.|++.||+|||+++..+.++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~ 81 (377)
T TIGR00890 2 WWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLG 81 (377)
T ss_pred eEEEeHHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHH
Confidence 4566666666666667778999999999999999999999988888888765 899999999999999999999999999
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccCCCccchHhhHhhhhhhHHHHHHHHHhhcCCCh
Q 008778 92 YGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDP 171 (554)
Q Consensus 92 ~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~ 171 (554)
.++++++ ++++++++.|+++|++.+..++.....+.+|+|++|++++++...+.++|..+.+|+...+.+..+
T Consensus 82 ~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 154 (377)
T TIGR00890 82 FTFYAIA-------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEG 154 (377)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhccc
Confidence 9999988 899999999999999999998888889999999999999999999999999888888887777667
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHH
Q 008778 172 AKFLFMLAIVPFVVCLGAI-FFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIIL 250 (554)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (554)
|++.+....+...+..+.. +++++
T Consensus 155 ~~~~f~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 179 (377)
T TIGR00890 155 VPAAFIYMGIIFLLVIVLGAFLIGY------------------------------------------------------- 179 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheec-------------------------------------------------------
Confidence 7777666554443333222 21111
Q ss_pred hhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhh
Q 008778 251 LASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMW 330 (554)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (554)
|++ + ++++ +++ ...++.+.++.++
T Consensus 180 -------------------~~~-~-------~~~~--------------~~~---------------~~~~~~~~~~~~~ 203 (377)
T TIGR00890 180 -------------------PPG-Q-------LIKT--------------NIE---------------VSVKDYTVWEMLR 203 (377)
T ss_pred -------------------Cch-h-------cccc--------------Ccc---------------cchhhhhHHHHHc
Confidence 111 0 0000 000 0001113367788
Q ss_pred hhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHH
Q 008778 331 TVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQ 408 (554)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 408 (554)
+|.+|.+.+..++..........+.+++.+++|.++. ....+...++..+++++.|++.||++||+.. ..+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~------~~~~ 277 (377)
T TIGR00890 204 TPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTM------SIVF 277 (377)
T ss_pred CccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hHHH
Confidence 8888887776665544444445556677777887653 3466788899999999999999999998765 4444
Q ss_pred HHHHHHHHHHHhcc-Cc--hhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHh
Q 008778 409 ILMAVGYILMAVAL-PG--SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYD 485 (554)
Q Consensus 409 ~l~~~~~~l~~~~~-~~--~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~ 485 (554)
.+.+++.+++...+ .. ......++.+++.|...+..+.++.|.+|+++++++.|+.+....++..+ +|.+.|.+.|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-~~~~~g~l~~ 356 (377)
T TIGR00890 278 GISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIF-GGLIASHALT 356 (377)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 55555554443322 11 23344567788888877888889999999999999999999999999998 8999999999
Q ss_pred ccCCCCCCCCcccccccchHHHHHHHHHHHHHHH
Q 008778 486 AQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGF 519 (554)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~ 519 (554)
..+ |+..|.+.+++.++++
T Consensus 357 ~~g---------------~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 357 EIG---------------FEYTFIVTGAFALTSL 375 (377)
T ss_pred hhc---------------hhhHHHHHHHHHHHhc
Confidence 876 8999988887776654
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=289.67 Aligned_cols=398 Identities=14% Similarity=0.108 Sum_probs=279.6
Q ss_pred ccccchhHHHHHHHHHHHhh-ccchhhhhcHHHHHHhcCCChhhHHHHHHHHHHHH-hhhhhhhhhcccCCchHHHHHHH
Q 008778 8 TSSAGKWLGFVTAVWVQAIS-GNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLIGS 85 (554)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~dr~G~r~~~~~g~ 85 (554)
++..++|.++..+++..... +..+.++.+.|++++++|++.++.+++.+.+.+.. +.+++.|++.||+|||++++.+.
T Consensus 12 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 91 (455)
T TIGR00892 12 PDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGG 91 (455)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhH
Confidence 45567898888877665432 33367888999999999999999999766666555 45899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCchHHHHHH-HHHHHhchhhHhhhhHHHHHHhhccCCCccchHhhHhhhhhhHHHHHHHHH
Q 008778 86 LEGLVGYGAQWLVVSRKIQPLSYWQMCV-FLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCS 164 (554)
Q Consensus 86 ~l~~~~~~~~~~a~~~~~~~~s~~~l~~-~r~l~Gig~g~~~~~~~~~i~~~fp~~rg~a~gi~~~~~~lg~~i~~~l~~ 164 (554)
+++.+++++++++ ++++++++ .|+++|++.+...+.....+.+|||++|++++|+...+..+|..+++++.+
T Consensus 92 ~~~~~~~~~~~~~-------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~ 164 (455)
T TIGR00892 92 LLASLGMILASFS-------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQ 164 (455)
T ss_pred HHHHHHHHHHHHh-------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 9999999998888 78888875 579999999987777778889999988999999999999999999989888
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHH
Q 008778 165 ALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFS 244 (554)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (554)
.+.+..+|++.++...+..++..+..+++++.+....
T Consensus 165 ~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~------------------------------------------- 201 (455)
T TIGR00892 165 YLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQR------------------------------------------- 201 (455)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccc-------------------------------------------
Confidence 8877777888877776655544443333322211000
Q ss_pred HHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCch
Q 008778 245 GILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHT 324 (554)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (554)
+.+++ ++ +..++ . ...++.+ .++..+...+..
T Consensus 202 -----------------------~~~~~----~~--~~~~~---~------~~~~~~~----------~~~~~~~~~~~~ 233 (455)
T TIGR00892 202 -----------------------VSKSK----SK--EGLPP---D------GSTKKLS----------KKSTAEKINRFL 233 (455)
T ss_pred -----------------------ccccc----cc--ccCCC---C------Ccccccc----------ccchhhhhhhhc
Confidence 00000 00 00000 0 0000000 000000000111
Q ss_pred HHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHh--hhcCCCc
Q 008778 325 IFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFI--KRAGTPR 400 (554)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g--~r~~~~~ 400 (554)
..+++++|.+|...+..++..........+++++.++.|+++. +...+..+++.+++++..|++.||.. +|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~-- 311 (455)
T TIGR00892 234 DFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQY-- 311 (455)
T ss_pred chHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHH--
Confidence 1357889999988777665555555566678888888888753 34677888999999999999999742 22211
Q ss_pred hhHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhH
Q 008778 401 PIWNAASQILMAVGYILMAV-ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLL 479 (554)
Q Consensus 401 ~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i 479 (554)
....+..+.++..++... .+.+.+++..++.|++++...+...+++.|.+|+++++++.|+.++..+++.++ +|.+
T Consensus 312 --~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i-gp~i 388 (455)
T TIGR00892 312 --LFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLI-GPPL 388 (455)
T ss_pred --HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHc-cccc
Confidence 112222222333333322 233455667788899888888888889999999999999999999999999999 9999
Q ss_pred HHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHH
Q 008778 480 AGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLD 522 (554)
Q Consensus 480 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~ 522 (554)
.|.+.|..+. |+..|++.+++.+++.+..
T Consensus 389 ~G~l~~~~g~--------------~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 389 AGRLVDATKN--------------YKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred eeeeehhcCC--------------cchHHHHhhHHHHHHHHHH
Confidence 9999998753 8899998888777665533
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=292.15 Aligned_cols=428 Identities=18% Similarity=0.210 Sum_probs=317.5
Q ss_pred cccchhHHHHHHHHHHHhh-ccchhhhhcHHHHHHhcCCChhhHHHHHHHHH-HHHhhhhhhhhhcccCCchHHHHHHHH
Q 008778 9 SSAGKWLGFVTAVWVQAIS-GNNYTFSNYSDALKTLMNLTQLELNNLSVVKD-IGKAFGLLAGLASDRIPAPIILLIGSL 86 (554)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~-~~~~~~~~~G~l~dr~G~r~~~~~g~~ 86 (554)
+.-+.|.+++++++++... |..+.++++.+.++++|+.+.++++|+.+... +....+|+.+.+.||||.|.+.++|.+
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~ 119 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL 119 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence 4457799999998887754 77899999999999999999999999755544 444559999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCchHHHHHH-HHHHHhchhhHhhhhHHHHHHhhccCCCccchHhhHhhhhhhHHHHHHHHHh
Q 008778 87 EGLVGYGAQWLVVSRKIQPLSYWQMCV-FLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSA 165 (554)
Q Consensus 87 l~~~~~~~~~~a~~~~~~~~s~~~l~~-~r~l~Gig~g~~~~~~~~~i~~~fp~~rg~a~gi~~~~~~lg~~i~~~l~~~ 165 (554)
+.++|.++++++ +++|++++ +.++.|+|.|+.+.++..++..||+|||+.|+|+..++.++|..+++++...
T Consensus 120 v~~~g~~lssF~-------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~ 192 (509)
T KOG2504|consen 120 VAALGLLLSSFA-------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKY 192 (509)
T ss_pred HHHHHHHHHHHH-------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHH
Confidence 999999999999 89999987 5999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHH
Q 008778 166 LFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSG 245 (554)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (554)
+++..+|+..++.-..+.+..++.....+|...+...+++++.+....
T Consensus 193 l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~-------------------------------- 240 (509)
T KOG2504|consen 193 LLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAA-------------------------------- 240 (509)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccc--------------------------------
Confidence 999988777776666666666666666676554443321111111000
Q ss_pred HHHHHhhhcccccchhhhhhcccccCCCCCCchhh-hhhccccCCCCCCccccccccchhhhHHHHHHhhc-CCCCCCC-
Q 008778 246 ILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQ-QVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKR-RPVLGED- 322 (554)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 322 (554)
..+..+...+.+. ++.++.. +...+++. +.+..+++.+ .+.+...
T Consensus 241 ----------------------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 288 (509)
T KOG2504|consen 241 ----------------------SVESTPKPVELRISERDSGLK-------KLSLSNLA---TLKRGPDKWRNSPLQAFLS 288 (509)
T ss_pred ----------------------cccccccccccccccCCCCCC-------cccccchh---hhhhCCccccccchhhhhh
Confidence 0000000000000 0000000 00000000 0000000000 0110001
Q ss_pred chHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCc
Q 008778 323 HTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPR 400 (554)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~ 400 (554)
.--++++++|.|+.+.+...+..........+++.+.++.|+++. +..++..++.+++||++.|++.|+...++.
T Consensus 289 ~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~--- 365 (509)
T KOG2504|consen 289 MLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRAL--- 365 (509)
T ss_pred hhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchH---
Confidence 112689999999999999888888777788889999999999754 458899999999999999999999874332
Q ss_pred hhHHHHHHHHHHHHHHHHHhccC-chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhH
Q 008778 401 PIWNAASQILMAVGYILMAVALP-GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLL 479 (554)
Q Consensus 401 ~~~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i 479 (554)
+...++.+..++..+..+..+. ..+...++++|++.|...+..+.++.|..+.++.+.++|+....+.++..+ ||++
T Consensus 366 -~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~-gpPi 443 (509)
T KOG2504|consen 366 -VLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALV-GPPI 443 (509)
T ss_pred -HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHc-Cccc
Confidence 2334444545555544454444 467788899999999998888899999999999999999999999999999 8999
Q ss_pred HHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhH
Q 008778 480 AGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 480 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~ 526 (554)
.|+++|.+++ |...|+.+++..+++.+..+...
T Consensus 444 ag~~~d~tg~--------------Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 444 AGLLYDITGN--------------YDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred ceeeeeccCC--------------eeeehhhcChHHHHHHHHHHHhH
Confidence 9999999986 99999999988888877665554
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=290.07 Aligned_cols=407 Identities=13% Similarity=0.025 Sum_probs=260.5
Q ss_pred hHHHHHHHHHHHhhcc-chhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHH
Q 008778 14 WLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVG 91 (554)
Q Consensus 14 ~~~~~~~~~~~~~~g~-~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~ 91 (554)
|.++...++..+.... ...++...|.+++|+|++.++.+++.+.+.+++.+ +++.|++.||+|+|+++..+.++++++
T Consensus 28 ~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 107 (467)
T PRK09556 28 MQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAIC 107 (467)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHH
Confidence 3344444444443333 37788889999999999999999988888888765 899999999999999999998888888
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCC-
Q 008778 92 YGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD- 169 (554)
Q Consensus 92 ~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~- 169 (554)
.+..++..... .++++++++.|+++|++.+...+...+.+++|+|+ +||+++|+...+.++|.++++++...+...
T Consensus 108 ~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~ 185 (467)
T PRK09556 108 MLGFGASLGSG--SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF 185 (467)
T ss_pred HHHHHHHHhcc--cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh
Confidence 77766521110 16899999999999999999999999999999975 699999999999999998887776544332
Q ss_pred --ChHHHHHHHHHHHH-HHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHH
Q 008778 170 --DPAKFLFMLAIVPF-VVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGI 246 (554)
Q Consensus 170 --~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (554)
.+|+..+....+.. ++.++..++.++.|++...
T Consensus 186 ~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~-------------------------------------------- 221 (467)
T PRK09556 186 FDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGW-------------------------------------------- 221 (467)
T ss_pred ccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCC--------------------------------------------
Confidence 13554444333222 2222222222222111000
Q ss_pred HHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCch-H
Q 008778 247 LIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHT-I 325 (554)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 325 (554)
.+ + ++ . .+ ++. +.+++++ ++ ++. ..... .
T Consensus 222 -----------------------------~~-~-~~--~-~~--~~~---~~~~~~~---------~~-~~~-~~~~~~~ 251 (467)
T PRK09556 222 -----------------------------GK-A-EE--I-FG--EPI---SEEDKET---------ES-TDM-TKWQIFV 251 (467)
T ss_pred -----------------------------CC-h-hh--c-cc--Ccc---chhhhcc---------cc-ccC-cHHHHHH
Confidence 00 0 00 0 00 000 0000000 00 000 00011 1
Q ss_pred HhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchh
Q 008778 326 FEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPI 402 (554)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~ 402 (554)
++.+++|.+|...+..++..........+.|.|+++ +|++.. ....+...++..+|++..|+++||+++|+..
T Consensus 252 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~---- 327 (467)
T PRK09556 252 EYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRAL---- 327 (467)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH----
Confidence 347899999998888777766666677888988865 788753 3466677888999999999999999987643
Q ss_pred HHHHHHHHHHHHH--HHHHhccCc-hhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhh-hHHHhhhh
Q 008778 403 WNAASQILMAVGY--ILMAVALPG-SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPL-GSFLFSGL 478 (554)
Q Consensus 403 ~~~~~~~l~~~~~--~l~~~~~~~-~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~l~~p~ 478 (554)
.....+..++. ..+...++. ..++..+++|++.............|.+|++++|++.|+.+...++ ++++ +|.
T Consensus 328 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~-~~~ 404 (467)
T PRK09556 328 --VACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSF-AKV 404 (467)
T ss_pred --HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHH-Hhh
Confidence 22111122221 122222222 3335555566443332223345677999999999999999999997 6577 899
Q ss_pred HHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhH
Q 008778 479 LAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 479 i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~ 526 (554)
+.|++.|....... ...+...+|+..|+++.++.+++++..+++.
T Consensus 405 ~~G~i~~~~~~g~~---~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 405 GLGMIADPTKNGTP---IFGYTLTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred hHHHHhcccccccc---cccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999992110000 0001112499999999888888877666553
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=277.80 Aligned_cols=355 Identities=13% Similarity=0.056 Sum_probs=259.8
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
+..+...|++++|+|+|.+|.+++.+.+.+++.+ +++.|++.||+|||+++..+..++++++++++++ ++++
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a-------~~~~ 98 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY-------PQSA 98 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC-------cchH
Confidence 6788899999999999999999987777777765 8999999999999999999999999999999998 8999
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhccCCCccchHhhHhhhhhhHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~ 188 (554)
.+++.|+++|+|.+..++.....+.+|||++|++++|+...+..+|..+++++...+... .+|+..+....+..++.++
T Consensus 99 ~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~ 178 (393)
T PRK09705 99 LLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALF 178 (393)
T ss_pred HHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888999999998899999999988888888887777665543 2465544332222221111
Q ss_pred HHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhccc
Q 008778 189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL 268 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (554)
..+.. .. +
T Consensus 179 ~~~~~----------------------------------------------------------------------~~--~ 186 (393)
T PRK09705 179 AWWWQ----------------------------------------------------------------------SA--R 186 (393)
T ss_pred HHHHH----------------------------------------------------------------------hc--C
Confidence 00000 00 1
Q ss_pred ccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcch
Q 008778 269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348 (554)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (554)
+|++ + ++ ++ .+.++.++++++|.+.+.+++.....
T Consensus 187 ~~~~---------~-~~-------------------------------~~----~~~~~~l~~~~~~~l~~~~~~~~~~~ 221 (393)
T PRK09705 187 EVAS---------S-HK-------------------------------TT----TTPVRVVFTPRAWTLGVYFGLINGGY 221 (393)
T ss_pred CCcc---------c-cC-------------------------------CC----cCCcccccCHhHHHHHHHHHHHHHHH
Confidence 1111 0 00 00 01134556778887776666555555
Q ss_pred hhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccCchh
Q 008778 349 LAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPGSL 426 (554)
Q Consensus 349 ~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 426 (554)
.....+.|++.++.|.+.. ....+.+++++.+|+++.|++.||+++|+.. ..+..+.+++...+....+...
T Consensus 222 ~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~ 295 (393)
T PRK09705 222 ASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLL------MLALVLQLVGFCGFIWLPLQLP 295 (393)
T ss_pred HHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHH------HHHHHHHHHHHHHHHHccchHH
Confidence 5677788999888888753 4477888999999999999999999987644 3344444444443322111111
Q ss_pred HHHHHHHHhhhcccccchHHHHHHhhC-CcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchH
Q 008778 427 YIGSIIVGLCYGVRLAVTVPTASELFG-LKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYR 505 (554)
Q Consensus 427 ~~~~~l~g~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~ 505 (554)
.....+.|++.+..++.......+.++ ++++|+.+|+.+...++++.+ +|.+.|++.|..|+ |+
T Consensus 296 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~-gp~~~G~l~~~~g~--------------~~ 360 (393)
T PRK09705 296 VLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGL-APWFSGVLRSISGN--------------YL 360 (393)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCC--------------ch
Confidence 223345677777776766666666664 578899999999999999998 89999999999875 88
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhh
Q 008778 506 LVFVIMAMACIVGFGLDILLAAKTK 530 (554)
Q Consensus 506 ~~f~i~~~~~~~~~~~~~~l~~~~~ 530 (554)
..|.+.+++++++.+..+.+.++++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 361 MDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999988888877776666555543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-32 Score=277.89 Aligned_cols=395 Identities=16% Similarity=0.097 Sum_probs=263.1
Q ss_pred hhHHHHHHHHHHHhhcc-chhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHH
Q 008778 13 KWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLV 90 (554)
Q Consensus 13 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~ 90 (554)
||..+...++..++... .+.++.+.|++.+++|+|.++.+++.+...++..+ +++.|++.||+|||+++.++.++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence 44444444444443333 25778889999999999999999987777777754 89999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCC
Q 008778 91 GYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD 169 (554)
Q Consensus 91 ~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~ 169 (554)
+.++++++ ++++.+++.|++.|++.|..++.....+.+|+|+ +|++++|+...+.++|..+++++.+.+.+.
T Consensus 101 ~~~~~~~~-------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~ 173 (434)
T PRK11663 101 INILFGFS-------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH 173 (434)
T ss_pred HHHHHHHH-------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99998888 7899999999999999999888899999999985 699999999999999998888888888777
Q ss_pred ChHHHHHHHHHHHHH-HHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHH
Q 008778 170 DPAKFLFMLAIVPFV-VCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILI 248 (554)
Q Consensus 170 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (554)
.+|++.+....+..+ ..++..+.+++.|.+..
T Consensus 174 ~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~----------------------------------------------- 206 (434)
T PRK11663 174 YGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMG----------------------------------------------- 206 (434)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcC-----------------------------------------------
Confidence 778888776654443 32333333333221100
Q ss_pred HHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchH-Hh
Q 008778 249 ILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTI-FE 327 (554)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 327 (554)
.|+. . ++++ + .++.++ +++.+..+...-. ..
T Consensus 207 --------------------~~~~-~-------~~~~-------~----~~~~~~---------~~~~~~~~~~~~~~~~ 238 (434)
T PRK11663 207 --------------------LPSV-G-------EWRH-------D----ALELAQ---------QQEGAGLSRKEILTKY 238 (434)
T ss_pred --------------------CCCc-c-------cccc-------c----ccccch---------hccccCCChhhhHHHH
Confidence 0000 0 0000 0 000000 0000000000001 23
Q ss_pred hhhhhhHHHHHHHHHhhhcchhhhhccHHHHHh-HhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHH
Q 008778 328 AMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGL-ALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWN 404 (554)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~ 404 (554)
.+++|.+|.+.+..++.......+..+.|++++ ++|++.. ....+.+.+++.+|+++.|+++||+.+|++-......
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~ 318 (434)
T PRK11663 239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIF 318 (434)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHH
Confidence 667899998877766665555566678888885 4688753 3467788899999999999999999433211100111
Q ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHH
Q 008778 405 AASQILMAVGYILMAVALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLY 484 (554)
Q Consensus 405 ~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~ 484 (554)
..+..+..+.+......+........+.+|++...........+.|.+|++++|++.|+.+...++|+++ +|.+.|++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~p~~~g~l~ 397 (434)
T PRK11663 319 AAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAAL-SGYPLAKVL 397 (434)
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHH-hcccHHHHH
Confidence 1111212122221111111122222333333322222234456789999999999999999999999998 899999999
Q ss_pred hccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 485 DAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
|..+ |+..|++.+++.+++.+..+..
T Consensus 398 ~~~g---------------~~~~f~~~~~~~~~~~~~~~~~ 423 (434)
T PRK11663 398 EIWH---------------WTGFFVVISIAAGISALLLLPF 423 (434)
T ss_pred Hhcc---------------cHHHHHHHHHHHHHHHHHHHHH
Confidence 9876 8999999888877776654433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-31 Score=255.04 Aligned_cols=373 Identities=15% Similarity=0.140 Sum_probs=292.1
Q ss_pred cchhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHH
Q 008778 11 AGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG 88 (554)
Q Consensus 11 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~ 88 (554)
+..|..+....+..++.++. +...-..|++.+|+|+|..+.++..+.|.++..+ +|+...+.||+.||++++....++
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF 88 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 34566666666666777777 8888888999999999999999977777777755 999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhc
Q 008778 89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF 167 (554)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~ 167 (554)
.++.++++++ +||+.++++|++.|+..|..++....+..+..| +||++++++..++..++..++.|++..+-
T Consensus 89 i~~n~l~alA-------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig 161 (394)
T COG2814 89 IVSNLLSALA-------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG 161 (394)
T ss_pred HHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999 999999999999999999999999999999996 57999999999999999999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHH
Q 008778 168 ADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGIL 247 (554)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (554)
+..+||..|+.-....++.++..+...| |.+
T Consensus 162 ~~~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~------------------------------------------------ 192 (394)
T COG2814 162 QLFGWRATFLAIAVLALLALLLLWKLLP-PSE------------------------------------------------ 192 (394)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhCC-Ccc------------------------------------------------
Confidence 8888999888887777666655443222 110
Q ss_pred HHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHh
Q 008778 248 IILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFE 327 (554)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (554)
.+++ ...+..+..+
T Consensus 193 ---------------------~~~~---------------------------------------------~~~~~~~~~~ 206 (394)
T COG2814 193 ---------------------ISGS---------------------------------------------LPGPLRTLLR 206 (394)
T ss_pred ---------------------CCCC---------------------------------------------CCcchhHHHH
Confidence 0000 0001112378
Q ss_pred hhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHH
Q 008778 328 AMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWN 404 (554)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~ 404 (554)
++|+|..|...+..++.+...+..+.|+.+++++ .|++.. +..+..++++..+|+.++|++.|| +.|+..
T Consensus 207 ~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l------ 279 (394)
T COG2814 207 LLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRAL------ 279 (394)
T ss_pred HhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHH------
Confidence 8999999999888888888888888888888877 577754 447788999999999999999999 665543
Q ss_pred HHHHHHHHHHHHHHHh-cc-CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHH
Q 008778 405 AASQILMAVGYILMAV-AL-PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGY 482 (554)
Q Consensus 405 ~~~~~l~~~~~~l~~~-~~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~ 482 (554)
.....++.+..+.+.. .+ .....+..++.|+..+..........++ ..+|....+.++.....++|..+ |..++|.
T Consensus 280 ~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~-GA~lGG~ 357 (394)
T COG2814 280 IAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIAL-GAALGGL 357 (394)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3444444444444433 22 3334444555565555544455555555 44699999999999999999999 9999999
Q ss_pred HHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhh
Q 008778 483 LYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKT 529 (554)
Q Consensus 483 i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~ 529 (554)
++|+.| |....++.+.+.++++++.++..+.+
T Consensus 358 v~~~~g---------------~~~~~~~~a~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 358 VLDALG---------------YAATGWVGAALLLLALLLALLSARKD 389 (394)
T ss_pred HHHhhc---------------hHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999976 89999999999988888776654433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=272.28 Aligned_cols=383 Identities=15% Similarity=0.088 Sum_probs=271.4
Q ss_pred ccccccchhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHH
Q 008778 6 SYTSSAGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLI 83 (554)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~ 83 (554)
..++++++|.++..+++..+..+.. +..+...|.+.+++|++.++.+++.+...++..+ .++.|++.||+|||+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 85 (406)
T PRK11551 6 SSASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIV 85 (406)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 3456678999888888887776664 7888999999999999999999988888788765 8999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHH
Q 008778 84 GSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDL 162 (554)
Q Consensus 84 g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l 162 (554)
+.++..++.+++.++ ++++.+++.|+++|++.+...+.....+.|++| ++|++++++...+..+|..+++.+
T Consensus 86 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 158 (406)
T PRK11551 86 SVALFGLFSLATAQA-------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI 158 (406)
T ss_pred HHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888887 789999999999999999999999999999997 579999999999999999887777
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHH-HHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhh
Q 008778 163 CSALFADDPAKFLFMLAIVPFVVCLG-AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLAL 241 (554)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
...+....+|+..+.+..++.++..+ ...++++.+++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------------------- 198 (406)
T PRK11551 159 GVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQ---------------------------------------- 198 (406)
T ss_pred HHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHh----------------------------------------
Confidence 66665556677766665443333222 2222222111000
Q ss_pred HHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCC
Q 008778 242 IFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGE 321 (554)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (554)
++.++ ++++ + . .+
T Consensus 199 --------------------------~~~~~---------------------------~~~~-~---~---~~------- 211 (406)
T PRK11551 199 --------------------------AAGAG---------------------------KQRA-P---V---LR------- 211 (406)
T ss_pred --------------------------ccCcc---------------------------hhhh-h---h---HH-------
Confidence 00000 0000 0 0 00
Q ss_pred CchHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCC
Q 008778 322 DHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTP 399 (554)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~ 399 (554)
...+..+++..+.+.+..++.....+....+.|.+.++.|+++. ....+...++..+++++.|++.||+++|+..
T Consensus 212 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~- 288 (406)
T PRK11551 212 --ALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVV- 288 (406)
T ss_pred --HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-
Confidence 00000011222333333333333344556678888888888753 3466777889999999999999999988654
Q ss_pred chhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhh
Q 008778 400 RPIWNAASQILMAVGYILMAVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGL 478 (554)
Q Consensus 400 ~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~ 478 (554)
..+.+..++++..+... +...+.+..++.|++.+...+...++..|.+|+++++++.|+.+....+++.+ +|.
T Consensus 289 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-g~~ 362 (406)
T PRK11551 289 -----LLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMA-GPL 362 (406)
T ss_pred -----HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHH-Hhh
Confidence 33333333443333322 23344455667777777777778889999999999999999999999999998 999
Q ss_pred HHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 479 LAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 479 i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
+.|.+.|..+. |...+.+...+.+++.++.++.
T Consensus 363 ~~g~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 363 LAGQLLALGRS--------------TVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred hHhhhhccCCc--------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997653 7777777776666666655443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=276.42 Aligned_cols=399 Identities=14% Similarity=0.080 Sum_probs=274.5
Q ss_pred chhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHH
Q 008778 12 GKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGL 89 (554)
Q Consensus 12 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~ 89 (554)
++|.++...++..+..... .+.+...|++.+|+|.+.++.+|+.+.+.++.. +.++.|+++||+|||++++.+..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~ 82 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG 82 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3466555555554544443 778888999999999999999998888888875 48999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhc-c-CCCccchHhhHhhhhhhHHHHHHHHHhhc
Q 008778 90 VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNF-R-RNRGPVSGILKGYVGLSTAIFTDLCSALF 167 (554)
Q Consensus 90 ~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~f-p-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~ 167 (554)
+++++++++ +|+++++++|+++|+|.+...+.....+.+++ | ++|++++|+.....++|..+++++++.+.
T Consensus 83 ~~~~~~~~a-------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~ 155 (495)
T PRK14995 83 LASLAAAFS-------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL 155 (495)
T ss_pred HHHHHHHHc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999998 89999999999999999999888888888887 5 46999999999999999988888888888
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHh-hccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHH
Q 008778 168 ADDPAKFLFMLAIVPFVVCLGAIF-FLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGI 246 (554)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (554)
+..+|++.|+...+..++.++... .+++.+.+.. .+.+.........+...+.........+.+.++....
T Consensus 156 ~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~--------~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 227 (495)
T PRK14995 156 EHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRD--------QPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSL 227 (495)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--------CCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHH
Confidence 888899998888766665544443 3333222110 1112221111111111122222111111111111111
Q ss_pred HHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHH
Q 008778 247 LIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIF 326 (554)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (554)
..+........++.+ + .+ .++|+. ..
T Consensus 228 ~~~~~~~~l~~f~~~-------e-~~---------~~~p~~-------------------------------------~~ 253 (495)
T PRK14995 228 TLLTGALLLGLFIRT-------Q-LA---------ASRPMI-------------------------------------DM 253 (495)
T ss_pred HHHHHHHHHHHHHHH-------H-hc---------CCCCCc-------------------------------------CH
Confidence 111111111111110 0 00 011111 15
Q ss_pred hhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhH
Q 008778 327 EAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIW 403 (554)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~ 403 (554)
+++|+|.++...+..++..........+.|.+.|. +|+++. +.......++..++.++.|++.||+++|+..
T Consensus 254 ~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~----- 328 (495)
T PRK14995 254 RLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVA----- 328 (495)
T ss_pred HHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH-----
Confidence 78889888877666665555555566677888876 688854 4466778899999999999999999987643
Q ss_pred HHHHHHHHHHHHHHHHh-c--cC-chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhH
Q 008778 404 NAASQILMAVGYILMAV-A--LP-GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLL 479 (554)
Q Consensus 404 ~~~~~~l~~~~~~l~~~-~--~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i 479 (554)
..+..+.+++...+.. . +. .......++.|++.|...+.....+.+..|+++++.+.++.++.+++|+.+ |+.+
T Consensus 329 -~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~-G~ai 406 (495)
T PRK14995 329 -TGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGL-GIAI 406 (495)
T ss_pred -HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHH-HHHH
Confidence 4445555555443322 1 22 234567778899988888777778888899999999999999999999998 8999
Q ss_pred HHHHHhc
Q 008778 480 AGYLYDA 486 (554)
Q Consensus 480 ~g~i~~~ 486 (554)
.|.+++.
T Consensus 407 ~g~i~~~ 413 (495)
T PRK14995 407 FGLLLSR 413 (495)
T ss_pred HHHHHHH
Confidence 9998764
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-31 Score=271.54 Aligned_cols=411 Identities=15% Similarity=0.067 Sum_probs=262.3
Q ss_pred chhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHH
Q 008778 12 GKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGL 89 (554)
Q Consensus 12 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~ 89 (554)
++|..+...++........ ..++...|.+.++ |++.++.+++.+...++..+ +++.|++.||+|||++++++.++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~ 104 (452)
T PRK11273 26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 104 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence 3455544444433333322 4567788999888 99999999987777777754 9999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHH-hhc
Q 008778 90 VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCS-ALF 167 (554)
Q Consensus 90 ~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~-~l~ 167 (554)
++.+.++++... ..+++.+++.|++.|++.+..++.....+.+|+|+ +|++++|+...+.++|+.+.+++.. .+.
T Consensus 105 i~~~~~~~~~~~---~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 181 (452)
T PRK11273 105 AVMLFMGFVPWA---TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA 181 (452)
T ss_pred HHHHHHHhhhcc---cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999888775211 03678888999999999999888778889999975 6999999999988888766666543 232
Q ss_pred CCChHHHHHHHHHHHHHH-HHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHH
Q 008778 168 ADDPAKFLFMLAIVPFVV-CLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGI 246 (554)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (554)
...+|++.+++..++.++ .++..+++++.|++...
T Consensus 182 ~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~-------------------------------------------- 217 (452)
T PRK11273 182 WFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGL-------------------------------------------- 217 (452)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCC--------------------------------------------
Confidence 234666666655444333 33333334333221000
Q ss_pred HHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCch-H
Q 008778 247 LIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHT-I 325 (554)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 325 (554)
+++ ++.+.+.+ ++.++++ ++ . .+.... .
T Consensus 218 -----------------------~~~-----~~~~~~~~----------~~~~~~~----------~~--~-~~~~~~~~ 246 (452)
T PRK11273 218 -----------------------PPI-----EEYKNDYP----------DDYNEKH----------EQ--E-LTAKQIFM 246 (452)
T ss_pred -----------------------CCh-----hhhhhccc----------ccccccc----------CC--C-ccHHHHHH
Confidence 000 00000000 0000000 00 0 000001 1
Q ss_pred HhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchh
Q 008778 326 FEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPI 402 (554)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~ 402 (554)
+.++++|.+|...+..++.....+....+.|.++++ .|++.. ......+.++.++++++.|+++||+++++...
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~--- 323 (452)
T PRK11273 247 QYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA--- 323 (452)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcch---
Confidence 346789999998887766665556677789999886 577743 33556778888999999999999995433211
Q ss_pred HHHHHHHHHHHHHHHHHh--c-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhH
Q 008778 403 WNAASQILMAVGYILMAV--A-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLL 479 (554)
Q Consensus 403 ~~~~~~~l~~~~~~l~~~--~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i 479 (554)
.......+..++...+.. . +.....+..+++|.+...........+.|.+|++.+|++.|+.+...++++.+.+|.+
T Consensus 324 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v 403 (452)
T PRK11273 324 TGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI 403 (452)
T ss_pred HHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhh
Confidence 111111222222222211 1 1222333344444433222223345667999999999999999999888876547999
Q ss_pred HHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhh
Q 008778 480 AGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNIYTKIYRS 539 (554)
Q Consensus 480 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 539 (554)
.|.+.|..+ |+..|.+++++++++++........++|++.|..+|
T Consensus 404 ~g~l~~~~g---------------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (452)
T PRK11273 404 VGYTVDFFG---------------WDGGFMVMIGGSILAVILLIVVMIGEKRHHEELLQK 448 (452)
T ss_pred HHHHHHHhc---------------chHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhh
Confidence 999999986 899999999888888777776655555544444433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=272.39 Aligned_cols=391 Identities=15% Similarity=0.122 Sum_probs=263.9
Q ss_pred chhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHH
Q 008778 12 GKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGL 89 (554)
Q Consensus 12 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~ 89 (554)
.+|......++...+.... ...+...|.+++|+|++.++.+++.+.+.+++.+ +++.|++.||+|||+++..+.++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~ 84 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWG 84 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHH
Confidence 4566666655555554444 7888888999999999999999988888888765 8999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcC
Q 008778 90 VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA 168 (554)
Q Consensus 90 ~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~ 168 (554)
+++++++++ ++++++++.|+++|++.+...+....++.+|+|+ +|++++|++..+.++|..+++++.+.+..
T Consensus 85 ~~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 157 (412)
T TIGR02332 85 IASTATMFA-------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA 157 (412)
T ss_pred HHHHHHHHh-------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988 8899999999999999999998888999999985 69999999999999999888888776653
Q ss_pred ------CChHHHHHHHHHHHHHHH-HHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhh
Q 008778 169 ------DDPAKFLFMLAIVPFVVC-LGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLAL 241 (554)
Q Consensus 169 ------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
..+|++.++...++.++. ++..+++++.|++...-++. ++..... .
T Consensus 158 ~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~-~~~~~~~---~----------------------- 210 (412)
T TIGR02332 158 LDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEE-DKKALKE---M----------------------- 210 (412)
T ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHH-HHHHHHH---H-----------------------
Confidence 247888888866555443 33444455554321100000 0000000 0
Q ss_pred HHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCC
Q 008778 242 IFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGE 321 (554)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (554)
. ++.+. . .+++ + ++ .++ .....
T Consensus 211 ---------------------~----~~~~~-~-------~~~~-------------~--~~---------~~~-~~~~~ 232 (412)
T TIGR02332 211 ---------------------I----DNDQL-T-------LEQP-------------E--GA---------FAH-AAMPQ 232 (412)
T ss_pred ---------------------H----Hhccc-c-------cccc-------------c--cc---------ccc-ccccH
Confidence 0 00000 0 0000 0 00 000 00000
Q ss_pred CchHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhHh--CCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcC
Q 008778 322 DHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLAL--GYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAG 397 (554)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~ 397 (554)
...++++ ++|.+|...+.+++.......+..++|+++++. |+++. ........++..+|++..|+++||+++|+.
T Consensus 233 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~ 311 (412)
T TIGR02332 233 RSMLREI-FTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH 311 (412)
T ss_pred HHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence 1122333 468888888887777766777888999999875 45533 336677889999999999999999987653
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhh
Q 008778 398 TPRPIWNAASQILMAVGYILMAVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFS 476 (554)
Q Consensus 398 ~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~ 476 (554)
. ......+..+++.+.... ++........+.+++.....+.......|.+|++++++++|+.+...++|+++ +
T Consensus 312 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~-~ 385 (412)
T TIGR02332 312 H-----TALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSAL-S 385 (412)
T ss_pred H-----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhh-h
Confidence 2 112222233333222222 22222222223333332223334444567899999999999999999999998 8
Q ss_pred hhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHH
Q 008778 477 GLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMAC 515 (554)
Q Consensus 477 p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~ 515 (554)
|.+.|.+.|..++ |+.+|++.+++.
T Consensus 386 p~~~g~i~~~~g~--------------~~~~~~~~~~~~ 410 (412)
T TIGR02332 386 PFLIGILKDATGS--------------FNSGLWFVAALL 410 (412)
T ss_pred hhhcccccccCCC--------------CchhHHHHHHHH
Confidence 9999999999864 898888776543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-30 Score=261.42 Aligned_cols=367 Identities=11% Similarity=0.006 Sum_probs=261.3
Q ss_pred chhHHHHHHHHHHHhh-ccchhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHH
Q 008778 12 GKWLGFVTAVWVQAIS-GNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGL 89 (554)
Q Consensus 12 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~ 89 (554)
++|.......+..... ...+......|++.+++|.|.++.+++.+.+.++.. .+++.|++.||+|||+++..+..+++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 85 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFI 85 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3454333333333322 223445556799999999999999998777776665 58899999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcC
Q 008778 90 VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA 168 (554)
Q Consensus 90 ~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~ 168 (554)
++++.++++ ++++++++.|+++|++.+..++.....+.+++| ++|++++|+...+.++|..+++++.+.+.+
T Consensus 86 ~~~~~~~~~-------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~ 158 (390)
T PRK03545 86 ASHVLSALA-------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ 158 (390)
T ss_pred HHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999988 899999999999999999988888899999997 479999999999999999888888877766
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHH
Q 008778 169 DDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILI 248 (554)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (554)
..+|++.++...+..++..+..+...
T Consensus 159 ~~gw~~~f~~~~~~~~l~~~~~~~~~------------------------------------------------------ 184 (390)
T PRK03545 159 YLGWRTTFLAIGGGALITLLLLIKLL------------------------------------------------------ 184 (390)
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhC------------------------------------------------------
Confidence 66777776666544433322111000
Q ss_pred HHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhh
Q 008778 249 ILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEA 328 (554)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (554)
+++++ +++ ....+.++.
T Consensus 185 -------------------~~~~~----------~~~----------------------------------~~~~~~~~~ 201 (390)
T PRK03545 185 -------------------PLLPS----------EHS----------------------------------GSLKSLPLL 201 (390)
T ss_pred -------------------CCCCC----------CCc----------------------------------chHHHHHHH
Confidence 00000 000 001123577
Q ss_pred hhhhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHH
Q 008778 329 MWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNA 405 (554)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~ 405 (554)
+|+|.+|......++..........+.+++.++ .|+++. ....+..+++++++++..|+++||+++|.. .
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-------~ 274 (390)
T PRK03545 202 FRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-------L 274 (390)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-------H
Confidence 888888765554444333333344556667665 577654 346677888999999999999999987642 2
Q ss_pred HHHHHHHHHHHHH-Hhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHH
Q 008778 406 ASQILMAVGYILM-AVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYL 483 (554)
Q Consensus 406 ~~~~l~~~~~~l~-~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i 483 (554)
.+..+...+...+ ... +...+.+..++.|++.+...+.....+.+..| ++++++.|+.+...++|..+ ||.+.|.+
T Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~-G~~~~G~~ 352 (390)
T PRK03545 275 IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGA-GALLGNQV 352 (390)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 2223233333222 222 23345566777788776655566667777765 68899999999999999998 99999999
Q ss_pred HhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhH
Q 008778 484 YDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~ 526 (554)
.|..+ ++..|.+.+.+.+++++..+...
T Consensus 353 ~~~~g---------------~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 353 SLHLG---------------LSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HhccC---------------hhHHHHHHHHHHHHHHHHHHHHc
Confidence 99987 89999999988888777655543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=277.37 Aligned_cols=438 Identities=12% Similarity=0.031 Sum_probs=285.0
Q ss_pred cchhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHH
Q 008778 11 AGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG 88 (554)
Q Consensus 11 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~ 88 (554)
+.+|.+++.+.+..+..+.. ...+...|.+.++++++..+.+++.+...++.++ .+++|+++||+|||++++++.+++
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~ 242 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 45676666666665555553 6678888999999999999999987777788865 899999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhc
Q 008778 89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF 167 (554)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~ 167 (554)
+++.++++++ ++++.++++|+++|+|.|...+....++.+++|+ +||+++++...+..+|.++++.++..++
T Consensus 243 ~i~~ll~afa-------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 243 GFFAFFSSFV-------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred HHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888 7899999999999999999999999999999985 6999999999999999888776665544
Q ss_pred CC-------------ChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCC
Q 008778 168 AD-------------DPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPN 234 (554)
Q Consensus 168 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (554)
.. ..|++++++++++.++.++..++++++|.+...+++.++..+ .+...
T Consensus 316 ~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~--iL~~i---------------- 377 (742)
T TIGR01299 316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWM--ILKLI---------------- 377 (742)
T ss_pred HhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHH--HHHHH----------------
Confidence 21 358888888888888888888888888766432111111111 00000
Q ss_pred CcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhh-hccccCCCCCCccccccccchhhhHHHHHHh
Q 008778 235 KSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQV-VEPLLNGETTGTEEVVAVEDTVVAVVAVEEV 313 (554)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (554)
...+.++.....+.-..+. +.+... ++. .+.+++.. +..+.....
T Consensus 378 -----------------------------~~~n~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~-~~~~~~~~~ 423 (742)
T TIGR01299 378 -----------------------------HDTNMRAKGHPEKVFSVNHIKTIHQE--DEL--IEIESDTG-TWYQRCFVR 423 (742)
T ss_pred -----------------------------hcCCCCCcCchhHHHHHHHHHHhhhh--hhh--hccccccc-chhhcchhh
Confidence 0000000000000000000 000000 000 00000000 000000000
Q ss_pred hcCCCCCCCchHHhhhhhhh---HHHHHHHHHhhhcchhhhhccHHHHHhHh----------------------------
Q 008778 314 KRRPVLGEDHTIFEAMWTVD---FWILFVSFLCGVGTGLAVMNNMGQIGLAL---------------------------- 362 (554)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 362 (554)
..........+++++++.+. .+.+++..++....++.+..|+|.+.++.
T Consensus 424 ~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (742)
T TIGR01299 424 ALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLEN 503 (742)
T ss_pred hhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhh
Confidence 00000000112444554332 23444455555566777778888765331
Q ss_pred --------------CCC---------------------------------------------------------------
Q 008778 363 --------------GYV--------------------------------------------------------------- 365 (554)
Q Consensus 363 --------------g~~--------------------------------------------------------------- 365 (554)
|+.
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 583 (742)
T TIGR01299 504 QIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGC 583 (742)
T ss_pred hhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCcc
Confidence 000
Q ss_pred ------c----c--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHH
Q 008778 366 ------D----V--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGSLYIGSII 432 (554)
Q Consensus 366 ------~----~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~l 432 (554)
+ . .....+..++.++|.++.|+++||+|||+.+ .++.++.+++.+++... +...+++..++
T Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l------~~~~~lsai~~ll~~~~~s~~~ll~~~~l 657 (742)
T TIGR01299 584 PIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRML------AGSMVLSCISCFFLSFGNSESAMIALLCL 657 (742)
T ss_pred CccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 0 0 0013455688899999999999999998765 55555555555544432 22344455567
Q ss_pred HHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHH
Q 008778 433 VGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMA 512 (554)
Q Consensus 433 ~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~ 512 (554)
++++.+..++...++++|++|++.|++++|+.+....+|+++ +|.+.+.+.+.. ...+|++++
T Consensus 658 ~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaii-gp~i~g~L~~~~----------------~~~pf~i~a 720 (742)
T TIGR01299 658 FGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVL-GILIFGSFVGIT----------------KAAPILFAS 720 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh----------------hHHHHHHHH
Confidence 777777777888899999999999999999999999999999 999999888754 467888888
Q ss_pred HHHHHHHHHHHHhHHhhhh
Q 008778 513 MACIVGFGLDILLAAKTKN 531 (554)
Q Consensus 513 ~~~~~~~~~~~~l~~~~~~ 531 (554)
++.+++.++.+++ +++++
T Consensus 721 ~~lll~~ll~~~L-PET~~ 738 (742)
T TIGR01299 721 AALACGGLLALKL-PDTRG 738 (742)
T ss_pred HHHHHHHHHHHhC-CCCcc
Confidence 7777777766655 55443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-30 Score=257.39 Aligned_cols=351 Identities=13% Similarity=0.069 Sum_probs=243.6
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
..++...|.+++|+|+|.+|.+++.+.+.+++.+ +++.|++.||+|||++++.+......+....... ++++
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-------~~~~ 80 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP-------FNYE 80 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh-------ccHH
Confidence 5677888999999999999999988887787754 8999999999999987765555444443322222 5799
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH-H
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVC-L 187 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~ 187 (554)
++++.|+++|+|.+. .......+++|+| ++|++++++...+.++|.++++++...+....+||+.++...++.++. +
T Consensus 81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~ 159 (368)
T TIGR00903 81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGII 159 (368)
T ss_pred HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 999999999999996 4566666789997 579999999999999999998888887777778888877744444333 3
Q ss_pred HHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcc
Q 008778 188 GAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN 267 (554)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (554)
+..+.+++.|++.
T Consensus 160 ~~~~~lp~~p~~~------------------------------------------------------------------- 172 (368)
T TIGR00903 160 LVLAALPALPFQA------------------------------------------------------------------- 172 (368)
T ss_pred HHHHHcCCCCCCC-------------------------------------------------------------------
Confidence 2222222211100
Q ss_pred cccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcc
Q 008778 268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT 347 (554)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (554)
+ + . .+. ++ ....+++++++|.+|.+.+..++....
T Consensus 173 --~-~------------~------------~~~------------~~------~~~~~~~ll~~~~~~~~~~~~~~~~~~ 207 (368)
T TIGR00903 173 --A-E------------G------------FGF------------KD------AVKEFGALAGRKDLWIIGAILGFGVAL 207 (368)
T ss_pred --C-C------------C------------cch------------HH------HHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 0 0 0 000 00 001247899999999999998888888
Q ss_pred hhhhhccHHHHHhHhCCCcchhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCchh
Q 008778 348 GLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGSL 426 (554)
Q Consensus 348 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~ 426 (554)
.+.+..|+|+++++.|++... .....+....|.+..++++||..||.. |.........+.++....+... ++...
T Consensus 208 ~~~~~~wlp~~L~~~g~s~~~--~~~~~l~~~~g~~g~~~~~d~~~r~~~--r~~~~~~~~~~~a~~~~~~~~~~~~~~~ 283 (368)
T TIGR00903 208 FDNLAIWLEAALRPAGLEDIA--GDAVALAILAGLIGVAVIPDRVARAGL--RSIYIRAAALLIAAFFLALAFELNRLAL 283 (368)
T ss_pred HHHHHHHHHHHHHHCCCChHH--HHHHHHHHHHHHHHHHHhhHHhhhhhh--HHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence 888889999999888877532 122333334445556889999876532 1111222222233333333322 23333
Q ss_pred HHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHH
Q 008778 427 YIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRL 506 (554)
Q Consensus 427 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~ 506 (554)
.+...+.+++....++...++.+|.+|++.||++.|+.+...++++.+ +|.+.+.+.. + .+.
T Consensus 284 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~-~~~~~~~~~~--~---------------~~~ 345 (368)
T TIGR00903 284 FAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVA-LALAAMLFIS--S---------------AEA 345 (368)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHH-HHHHHHHHhc--C---------------HHH
Confidence 445555666666666777789999999999999999999999999988 7888887773 3 678
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008778 507 VFVIMAMACIVGFGLDI 523 (554)
Q Consensus 507 ~f~i~~~~~~~~~~~~~ 523 (554)
.|.+.++..+++.+...
T Consensus 346 ~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 346 YFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888877766653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-30 Score=263.78 Aligned_cols=362 Identities=12% Similarity=0.106 Sum_probs=250.9
Q ss_pred ccchhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHH
Q 008778 10 SAGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLE 87 (554)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l 87 (554)
.+.+|..++.+.+..+..+.. +..+...|.+++++|+|..+.+++.+...++..+ +++.|++.||+|||+++..+.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~ 92 (426)
T PRK12307 13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA 92 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 345666666656555555554 5667788999999999999999988778788765 89999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhh
Q 008778 88 GLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSAL 166 (554)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l 166 (554)
.+++.++++++ ++++.++++|+++|++.+..++....++.|++|+ +|++++++...+.++|.++++++...+
T Consensus 93 ~~~~~~~~~~~-------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l 165 (426)
T PRK12307 93 YSVGTGLSGLA-------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSF 165 (426)
T ss_pred HHHHHHHHHHH-------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHH
Confidence 99999999888 7899999999999999999999999999999985 599999999999999998888887777
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHH
Q 008778 167 FADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGI 246 (554)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (554)
.+..+|++.++++.++.++.+. +....|+.. .
T Consensus 166 ~~~~~w~~~f~i~~~~~~~~~~---~~~~~p~~~-~-------------------------------------------- 197 (426)
T PRK12307 166 AEAYGWRAAFFVGLLPVLLVIY---IRARAPESK-E-------------------------------------------- 197 (426)
T ss_pred cccCCHHHHHHHHHHHHHHHHH---HHHHCCCCh-H--------------------------------------------
Confidence 7667788887765433322211 100001000 0
Q ss_pred HHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHH
Q 008778 247 LIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIF 326 (554)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (554)
.++++ .+++ .++++ ..........+
T Consensus 198 ---------------------~~~~~---------~~~~------------~~~~~-------------~~~~~~~~~~~ 222 (426)
T PRK12307 198 ---------------------WEEAK---------LSGK------------GKHSQ-------------SAWSVFSLSMK 222 (426)
T ss_pred ---------------------HHHhh---------hhcc------------ccccc-------------cchhhhhHHHH
Confidence 00000 0000 00000 00000112456
Q ss_pred hhhhhhhHHHHHHHHH---hhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCch
Q 008778 327 EAMWTVDFWILFVSFL---CGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRP 401 (554)
Q Consensus 327 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~ 401 (554)
+++++|.++....... ......+.+..++|.+.++.|+++. ....+...++..+++++.|++.||+++|+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~--- 299 (426)
T PRK12307 223 GLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTF--- 299 (426)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH---
Confidence 7888888775443322 2222223345677888888888753 3356777889999999999999999988644
Q ss_pred hHHHHHHHHHHHHHHHHH-hccCchhHHHHHHHHhhh--cccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhh
Q 008778 402 IWNAASQILMAVGYILMA-VALPGSLYIGSIIVGLCY--GVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGL 478 (554)
Q Consensus 402 ~~~~~~~~l~~~~~~l~~-~~~~~~~~~~~~l~g~~~--g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~ 478 (554)
..+.++.++..+.+. ........+..++++++. .+..+..+..+.|.+|++++|++.|+.+....+++.+ +|.
T Consensus 300 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~-gp~ 375 (426)
T PRK12307 300 ---SIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTF-NSM 375 (426)
T ss_pred ---HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHH-HHH
Confidence 333333333333222 222222223334444432 2234567788899999999999999999999999998 999
Q ss_pred HHHHHHhccC
Q 008778 479 LAGYLYDAQA 488 (554)
Q Consensus 479 i~g~i~~~~~ 488 (554)
+.|++.|..+
T Consensus 376 ~~g~l~~~~g 385 (426)
T PRK12307 376 AATWLGITMG 385 (426)
T ss_pred HHHHHHHccc
Confidence 9999999886
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=260.79 Aligned_cols=379 Identities=15% Similarity=0.113 Sum_probs=264.9
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
+.++...|.+++++|++..+.+++.+...++..+ .++.|++.||+|||+++..+.++..++..+++++ ++++
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~ 83 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-------GAYV 83 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-------cCHH
Confidence 5677788999999999999999988777777765 8999999999999999999999999999999888 7899
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (554)
.+++.|+++|++.+...+....++.|++|+ +|++++++.....++|..+++++.+.+....+|++.+....+..++..+
T Consensus 84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (399)
T TIGR00893 84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGV 163 (399)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999985 6999999999999999999888888777777788777766555444333
Q ss_pred HHh-hccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcc
Q 008778 189 AIF-FLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN 267 (554)
Q Consensus 189 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (554)
..+ ..++++++.... .++
T Consensus 164 ~~~~~~~~~~~~~~~~--~~~----------------------------------------------------------- 182 (399)
T TIGR00893 164 LWLKFIPDPPQKAKWL--TEE----------------------------------------------------------- 182 (399)
T ss_pred HhhheecCCCCccccC--CHH-----------------------------------------------------------
Confidence 322 222222111000 000
Q ss_pred cccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcc
Q 008778 268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT 347 (554)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (554)
++++. .+. . .++. +++++++.+..+.++.+++|+++...+..++....
T Consensus 183 -------------~~~~~-~~~-~------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (399)
T TIGR00893 183 -------------EKYIV-VGG-L------LAEQ-----------QGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIG 230 (399)
T ss_pred -------------HHhhc-chh-h------cccc-----------ccccccCCCccchHHHhcCHHHHHHHHHHHHHHhH
Confidence 00000 000 0 0000 00001111233457888999999888877776666
Q ss_pred hhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc--c
Q 008778 348 GLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA--L 422 (554)
Q Consensus 348 ~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~--~ 422 (554)
......+.+.+.++ .|.++. ....+...+++.+++++.|++.||+++|+......................... +
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (399)
T TIGR00893 231 LGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVN 310 (399)
T ss_pred HHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccch
Confidence 66677778888765 677643 346677788899999999999999999862210000011111111111111111 1
Q ss_pred CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCccccccc
Q 008778 423 PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAH 502 (554)
Q Consensus 423 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~ 502 (554)
.....+...+++.+.....+...++..|.+|+++++++.|+.+...++++.+ +|.+.|.+.|..++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~-~~~i~g~l~~~~g~------------- 376 (399)
T TIGR00893 311 IPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIV-GPIVIGAIAATTGS------------- 376 (399)
T ss_pred hHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhh-hhHHhhhhccCCCc-------------
Confidence 2222333333333333356788889999999999999999999999999999 89999999998764
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 008778 503 CYRLVFVIMAMACIVGFGLDIL 524 (554)
Q Consensus 503 ~~~~~f~i~~~~~~~~~~~~~~ 524 (554)
|+..|.+.+++.+++.+..++
T Consensus 377 -~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 377 -FAGALMVVAALALIGALSYLL 397 (399)
T ss_pred -hhHHHHHHHHHHHHHHHHHHH
Confidence 888898888887777665543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=255.60 Aligned_cols=373 Identities=14% Similarity=0.094 Sum_probs=264.8
Q ss_pred cchhHHHHHHHHHHHhhcc-chhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHH
Q 008778 11 AGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG 88 (554)
Q Consensus 11 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~ 88 (554)
.+||.....+++..+..+. .+.++...|++.+++|+|.++.+++.+...++..+ .++.|++.||+|||+++..+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~ 82 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455555555555455444 47889999999999999999999987777777765 899999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhc
Q 008778 89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF 167 (554)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~ 167 (554)
.++.++++++ ++++.+++.|+++|++.+...+.....+.+++|+ +|++++++.....++|+.+++++.+.+.
T Consensus 83 ~i~~~l~~~~-------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (394)
T PRK03699 83 ILAVAGLMFS-------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL 155 (394)
T ss_pred HHHHHHHHHc-------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887 7899999999999999999888888899999985 5999999988888888888877777665
Q ss_pred CC-ChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHH
Q 008778 168 AD-DPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGI 246 (554)
Q Consensus 168 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (554)
.+ .+|++.+....+..++..+..+. +
T Consensus 156 ~~~~gw~~~f~~~~~~~~~~~~~~~~-~---------------------------------------------------- 182 (394)
T PRK03699 156 ARSIEWYWVYACIGLVYVAIFILTLF-S---------------------------------------------------- 182 (394)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHh-c----------------------------------------------------
Confidence 53 46777666544433332221111 0
Q ss_pred HHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHH
Q 008778 247 LIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIF 326 (554)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (554)
+.|+. + ++++ +++ + +.. +
T Consensus 183 ---------------------~~p~~-~-------~~~~-------------~~~------------~--~~~------~ 200 (394)
T PRK03699 183 ---------------------EFPAL-G-------KHAP-------------KAD------------K--PVA------K 200 (394)
T ss_pred ---------------------CCccc-c-------ccCc-------------ccc------------C--ccc------c
Confidence 11111 0 0000 000 0 000 0
Q ss_pred hhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhH
Q 008778 327 EAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIW 403 (554)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~ 403 (554)
+ ..++.+|...+..++.....+.+..+.|.+.++ +|++.. ....+.+.++..+|+++.|+++||+++|+..
T Consensus 201 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l----- 274 (394)
T PRK03699 201 E-KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRIL----- 274 (394)
T ss_pred c-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHH-----
Confidence 0 124566776666666555555667788999865 688753 3466778889999999999999999988654
Q ss_pred HHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHH
Q 008778 404 NAASQILMAVGYILMAV-ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGY 482 (554)
Q Consensus 404 ~~~~~~l~~~~~~l~~~-~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~ 482 (554)
.....+..+...++.. ++.....+..++.|++.+..++...+...+..+ ++++...|......++|..+ +|.+.|+
T Consensus 275 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i-~p~~~G~ 351 (394)
T PRK03699 275 -TVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTML-TFVVTSP 351 (394)
T ss_pred -HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHH-HHHHHHH
Confidence 2222333333333322 333344556677788777777777777777664 55678889999999999998 8999999
Q ss_pred HHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhh
Q 008778 483 LYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKT 529 (554)
Q Consensus 483 i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~ 529 (554)
+.|..+ ++.++++.+++++++.++.+.+.+-.
T Consensus 352 l~~~~g---------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (394)
T PRK03699 352 IVAHFG---------------LQAALLTANGLYAVVFVMCILLGFVS 383 (394)
T ss_pred HHHHhC---------------chhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999876 78888888888887776655554433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=265.43 Aligned_cols=384 Identities=14% Similarity=0.057 Sum_probs=242.2
Q ss_pred hHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhh-HHHH-----HHHHHHHHhh-hhhhhhhcccCCchHHHHHHH
Q 008778 14 WLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLE-LNNL-----SVVKDIGKAF-GLLAGLASDRIPAPIILLIGS 85 (554)
Q Consensus 14 ~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~-~~~~-----~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~ 85 (554)
+..++.+.+..+..+.. ..++...|.+.++++.+.++ .+++ .+...++..+ +++.|++.||+|||+++.++.
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 33444444444444443 67788889999999754432 2221 2344455544 899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCchHHH--------HHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhH
Q 008778 86 LEGLVGYGAQWLVVSRKIQPLSYWQ--------MCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLST 156 (554)
Q Consensus 86 ~l~~~~~~~~~~a~~~~~~~~s~~~--------l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~ 156 (554)
+++++++++++++ +++++ ++++|+++|+|.|..++....+++||+| ++||++.++...+..+|.
T Consensus 95 ~l~~i~~~~~a~~-------~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~ 167 (490)
T PRK10642 95 VIMSISTFCIGLI-------PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGF 167 (490)
T ss_pred HHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 9999999999998 77764 7889999999999999999999999997 579999999988777777
Q ss_pred HHHHHHHHhhc--------CCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHh
Q 008778 157 AIFTDLCSALF--------ADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQV 228 (554)
Q Consensus 157 ~i~~~l~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (554)
.+++.+...+. ..++||+.|+++.++.++.++....++|.|..... .
T Consensus 168 ~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~-------~------------------ 222 (490)
T PRK10642 168 VLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQH-------V------------------ 222 (490)
T ss_pred HHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHH-------H------------------
Confidence 66654433221 24678888888765544333322222221110000 0
Q ss_pred HhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHH
Q 008778 229 YDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVV 308 (554)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (554)
++.++ . +++.
T Consensus 223 ---------------------------------------~~~~~-~-------~~~~----------------------- 232 (490)
T PRK10642 223 ---------------------------------------DKLEQ-G-------DREG----------------------- 232 (490)
T ss_pred ---------------------------------------Hhhhh-h-------cccc-----------------------
Confidence 00000 0 0000
Q ss_pred HHHHhhcCCCCCCCchHHhhhhh-hhHHHHHH-HHHhhhcchhhhhccHHHHHhH-hCCCcch--hhHHHHHHHHhHhhH
Q 008778 309 AVEEVKRRPVLGEDHTIFEAMWT-VDFWILFV-SFLCGVGTGLAVMNNMGQIGLA-LGYVDVS--IFVSLTSIWGFFGRI 383 (554)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~g~~ 383 (554)
....+..++++++++ ++.+.... ..++.....+....++|+++++ +|++... .......++..++.+
T Consensus 233 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~ 304 (490)
T PRK10642 233 --------LQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQP 304 (490)
T ss_pred --------ccccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000011233455542 23333222 2223334445566788888864 6887532 345566788889999
Q ss_pred HhhcchhhHhhhcCCCchhHHHHHHHHHH-HHH--HHHHhcc-CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhh
Q 008778 384 ISGSVSEYFIKRAGTPRPIWNAASQILMA-VGY--ILMAVAL-PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGL 459 (554)
Q Consensus 384 ~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~-~~~--~l~~~~~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~ 459 (554)
+.|+++||+|||+.+ ..+.++.. .+. +.....+ ...+++..++.+++.+...+..+.+.+|.+|++.|++
T Consensus 305 ~~g~l~dr~grr~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~ 378 (490)
T PRK10642 305 VMGLLSDRFGRRPFV------ILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYS 378 (490)
T ss_pred HHHHHHHHhccHHHH------HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchH
Confidence 999999999998754 22222111 111 1111222 2244556666777777666777788899999999999
Q ss_pred HHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhh
Q 008778 460 IYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKT 529 (554)
Q Consensus 460 ~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~ 529 (554)
+.|..+....+++.+ +|.+.+++.+..+. |...+++..+.++++++..+++ +++
T Consensus 379 ~~g~~~~~~~~~g~~-~p~i~g~l~~~~~~--------------~~~~~~~~~~~~~i~~~~~~~~-pes 432 (490)
T PRK10642 379 ALAAAFNISVLVAGL-TPTLAAWLVESTQN--------------LMMPAYYLMVVAVIGLITGVTM-KET 432 (490)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhCC--------------chHHHHHHHHHHHHHHHHHHHh-ccc
Confidence 999866666677777 79999999887653 5666666666666666655544 443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=264.63 Aligned_cols=369 Identities=15% Similarity=0.101 Sum_probs=238.3
Q ss_pred chhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchH
Q 008778 30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY 108 (554)
Q Consensus 30 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~ 108 (554)
.+.++.+.|.+++++|++.++.+++.+...++..+ +++.|++.||+|||+++..+.++++++.++++++ +++
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-------~s~ 124 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV-------SSA 124 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-------cCH
Confidence 36778888999999999999999987777777765 7999999999999999999999999999988887 789
Q ss_pred HHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhc----CC-----ChHHHHHHH
Q 008778 109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF----AD-----DPAKFLFML 178 (554)
Q Consensus 109 ~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~----~~-----~~~~~~~~~ 178 (554)
+.+++.|+++|++.+... .....+++|+|+ +||+++|+......+|..+++.+...+. .. .+||+.+.+
T Consensus 125 ~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i 203 (476)
T PLN00028 125 TGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFV 203 (476)
T ss_pred HHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHH
Confidence 999999999999988653 455678999975 6999999987666666655544332221 11 246665555
Q ss_pred HHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhccccc
Q 008778 179 AIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIP 258 (554)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (554)
..++.++..+..+++++
T Consensus 204 ~g~l~l~~~l~~~~~~~--------------------------------------------------------------- 220 (476)
T PLN00028 204 PGLLHIIMGILVLTLGQ--------------------------------------------------------------- 220 (476)
T ss_pred HHHHHHHHHHHHHHHcC---------------------------------------------------------------
Confidence 44333322222111110
Q ss_pred chhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHH
Q 008778 259 VYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILF 338 (554)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (554)
+.|++ .. .+.++. .+ . ++.+....+++.++++++|.+.
T Consensus 221 ---------~~p~~-~~----~~~~~~---------------~~----------~---~~~~~~~~~~~~~~~~~~~~~~ 258 (476)
T PLN00028 221 ---------DLPDG-NY----RELKKS---------------GT----------M---PKDSFSKVLRYGVTNYRTWILA 258 (476)
T ss_pred ---------cCCCC-ch----hhHHhc---------------Cc----------c---ccccHHHHHHHHHcCchhHHHH
Confidence 11111 00 000000 00 0 0000112346778889999887
Q ss_pred HHHHhhhcchhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCC-chhHHHHHHHHHHHH
Q 008778 339 VSFLCGVGTGLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTP-RPIWNAASQILMAVG 414 (554)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~-~~~~~~~~~~l~~~~ 414 (554)
+.+++.......+..+.|.++++ .|++.. ....++..+++.+++++.|+++||+++|+... |.........+.++.
T Consensus 259 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~ 338 (476)
T PLN00028 259 LTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVF 338 (476)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHH
Confidence 77665555555566677888754 688753 34677888999999999999999999875321 233333333333333
Q ss_pred HHHHHhccC-chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCC
Q 008778 415 YILMAVALP-GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAG 493 (554)
Q Consensus 415 ~~l~~~~~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~ 493 (554)
.+++...+. ....+.+++++++.+...+...++..+.. ++++|+++|+.+....+|+.+ +|.+ ++..+.
T Consensus 339 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i-~~~l----~~~~~~---- 408 (476)
T PLN00028 339 CIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVL-TQLL----FFTGSS---- 408 (476)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHH-HHHH----HHhcCC----
Confidence 333332222 22334445555554444444444455554 578999999998877777776 5544 332211
Q ss_pred CCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhh
Q 008778 494 GGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKT 529 (554)
Q Consensus 494 ~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~ 529 (554)
.+|+.+|++.+++.+++.++.++.+...
T Consensus 409 --------~~y~~~f~~~~~~~~i~~~~~~~~~~~~ 436 (476)
T PLN00028 409 --------YSTETGISLMGVMIIACTLPVAFIHFPQ 436 (476)
T ss_pred --------ccHhhHHHHHHHHHHHHHHHHHheeccc
Confidence 1389999999988888888777765333
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-30 Score=244.59 Aligned_cols=375 Identities=16% Similarity=0.109 Sum_probs=269.9
Q ss_pred chhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHH-HHHHHHHhhhhhhhhhcccCCchHHHHHHHHHHH
Q 008778 12 GKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLS-VVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGL 89 (554)
Q Consensus 12 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~-~~~~~~~~~~~~~G~l~dr~G~r~~~~~g~~l~~ 89 (554)
.++..+..+.+.....-.. +.++...+.+.+++|+|..|.+++. +-...+..+-++.|.+.||||.|++..++.++..
T Consensus 11 ~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~ 90 (417)
T COG2223 11 IARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLL 90 (417)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHH
Confidence 3444554444444333333 7888999999999999999999965 4445555679999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcC
Q 008778 90 VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA 168 (554)
Q Consensus 90 ~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~ 168 (554)
+-.+..+++.+. +++|++++.+++.|++.+. +...+..+++|||| ++|.|+||.. ..++|..+...+...+..
T Consensus 91 IP~~~~~~a~~~----~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~ 164 (417)
T COG2223 91 IPCLGLAFAVTY----PSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV 164 (417)
T ss_pred HHHHHHHHHccC----CchHHHHHHHHHHhcccce-ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH
Confidence 999999998665 7789999999999998655 57888999999986 5899999998 557777766555544433
Q ss_pred CCh---HHHHHHHHHHHHHHHHHHHh-hccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHH
Q 008778 169 DDP---AKFLFMLAIVPFVVCLGAIF-FLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFS 244 (554)
Q Consensus 169 ~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (554)
..+ |+....+-.++.++..+..+ .++
T Consensus 165 ~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~-------------------------------------------------- 194 (417)
T COG2223 165 AFGFLAWRNVAGIYVVALAIAAVLAWLGMN-------------------------------------------------- 194 (417)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhC--------------------------------------------------
Confidence 222 33222222222222111111 000
Q ss_pred HHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCch
Q 008778 245 GILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHT 324 (554)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (554)
+.|+. ++ . .+......
T Consensus 195 -----------------------d~p~~-----------r~---------------------------~---~~~~~~~~ 210 (417)
T COG2223 195 -----------------------DVPEH-----------RA---------------------------S---VKPQLPAQ 210 (417)
T ss_pred -----------------------CChhh-----------hc---------------------------c---ccccchhH
Confidence 11211 00 0 00000133
Q ss_pred HHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCch
Q 008778 325 IFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRP 401 (554)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~ 401 (554)
.+.++++++.|.+.+.++..++....+..++|.++++ +|.++.. .......+.+.+.|+.+|+++||+|.++..
T Consensus 211 ~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~--- 287 (417)
T COG2223 211 LKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVT--- 287 (417)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHH---
Confidence 4678889999999999999999999999999999986 7887543 577788888999999999999999998765
Q ss_pred hHHHHHHHHHHHHHHHHHhcc-------Cc-hhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHH
Q 008778 402 IWNAASQILMAVGYILMAVAL-------PG-SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSF 473 (554)
Q Consensus 402 ~~~~~~~~l~~~~~~l~~~~~-------~~-~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 473 (554)
......++++........ +. .........+++.|.......-+++..+ +++.|.+.|+....+++|++
T Consensus 288 ---~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if-~~~~G~v~G~vga~G~lGGf 363 (417)
T COG2223 288 ---LAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIF-PKETGAVTGIVGAIGGLGGF 363 (417)
T ss_pred ---HHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHH-HhhhhHHHHHHHHhcccccc
Confidence 444444444444433211 11 2334455566677777777777888888 46899999999999999999
Q ss_pred HhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHh
Q 008778 474 LFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 474 l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
. -|...|..+|.++. |+..|++...+.+++.+..+..+.+
T Consensus 364 ~-lp~~~g~~~~~tg~--------------~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 364 F-LPLAFGVSLDLTGS--------------YTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred c-hhHHHHHHHHhccc--------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 59999999999985 9999999999999888877665443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=255.61 Aligned_cols=377 Identities=14% Similarity=0.094 Sum_probs=253.3
Q ss_pred ccccchhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHH
Q 008778 8 TSSAGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGS 85 (554)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~ 85 (554)
+..+++|..+....+..+..+.. +..+...|++++++|++.++.+++.+...++..+ +++.|++.||+|||++++.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 84 (405)
T TIGR00891 5 HLTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSI 84 (405)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34567888877777777766655 7788899999999999999999987777777754 899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHH
Q 008778 86 LEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCS 164 (554)
Q Consensus 86 ~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~ 164 (554)
++..++.++++++ ++++.+++.|+++|++.+..++....++.|++| ++|+++.++...+.++|..+++.+..
T Consensus 85 ~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 157 (405)
T TIGR00891 85 VLFSAGTLACGFA-------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYS 157 (405)
T ss_pred HHHHHHHHHHHHh-------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887 789999999999999999999999999999997 46999999999999999988888877
Q ss_pred hhcCCC--hHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhH
Q 008778 165 ALFADD--PAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALI 242 (554)
Q Consensus 165 ~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
.+.+.. .|++.+.++.++.++.++....+++.+.+... .+......
T Consensus 158 ~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----------------------------- 205 (405)
T TIGR00891 158 LVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEK---HAGKALVR----------------------------- 205 (405)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHH---hhhhhhhh-----------------------------
Confidence 776543 38888877766655554433333222111000 00000000
Q ss_pred HHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCC
Q 008778 243 FSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGED 322 (554)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (554)
+..++ ..++++. .+. ..+...
T Consensus 206 -------------------------~~~~~-------~~~~~~~--------------------------~~~-~~~~~~ 226 (405)
T TIGR00891 206 -------------------------TMVDI-------LYGGEHR--------------------------IAN-IVMTLA 226 (405)
T ss_pred -------------------------hHHHH-------Hhccchh--------------------------hhh-hhhhhh
Confidence 00000 0000000 000 000000
Q ss_pred chHHhhh-hh-hhHHHHHHHHHhhhcchhhhhccHHHHHh-HhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcC
Q 008778 323 HTIFEAM-WT-VDFWILFVSFLCGVGTGLAVMNNMGQIGL-ALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAG 397 (554)
Q Consensus 323 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~ 397 (554)
...++.. ++ +.+..+.....+..........+.|.+.+ +.|++.. ....+...++..+++++.|++.||+++|+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~ 306 (405)
T TIGR00891 227 AAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKA 306 (405)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 0001111 11 11222222222222222334456677765 4688754 346677889999999999999999999875
Q ss_pred CCchhHHHHHHHHHHHHHH-HHHhccC-chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHh
Q 008778 398 TPRPIWNAASQILMAVGYI-LMAVALP-GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLF 475 (554)
Q Consensus 398 ~~~~~~~~~~~~l~~~~~~-l~~~~~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~ 475 (554)
. ..+..+..+... +....+. ....+..++.+++.+...+..+..+.|.+|+++++++.|+.+....+++.+
T Consensus 307 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~- 379 (405)
T TIGR00891 307 Y------VCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGAL- 379 (405)
T ss_pred h------HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHH-
Confidence 4 333332222221 2222222 233444456666666667788889999999999999999999999999998
Q ss_pred hhhHHHHHHhccCC
Q 008778 476 SGLLAGYLYDAQAT 489 (554)
Q Consensus 476 ~p~i~g~i~~~~~~ 489 (554)
+|.+.|.+.|..|.
T Consensus 380 g~~~~g~l~~~~g~ 393 (405)
T TIGR00891 380 APIIGALLAQRLDE 393 (405)
T ss_pred HHHHHHHHHHhccc
Confidence 89999999999874
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-29 Score=258.65 Aligned_cols=382 Identities=12% Similarity=0.055 Sum_probs=255.7
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
+.+....|.+.+++|.+..+.+++.+.+.++.. ..+++|++.||+|||++++.+..+++++.++++++ ++++
T Consensus 27 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~ 99 (471)
T PRK10504 27 TIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS-------GTLN 99 (471)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-------CCHH
Confidence 566678899999999999999998777777765 48999999999999999999999999999888877 7899
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (554)
++++.|+++|++.+...+.....+.+++|+ +|+++.|+.....++|..+++++.+.+.+..+|++.+....+...+..+
T Consensus 100 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~ 179 (471)
T PRK10504 100 ELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAI 179 (471)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999985 6899999999998999988888888887777899888887766555544
Q ss_pred HHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCc-chhhhHHHHHHHHHhhhcccccchhhhhhcc
Q 008778 189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKS-ETLALIFSGILIILLASPVAIPVYSFIKSWN 267 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (554)
......+.+.. ...+.+.........+...+......... .+............. ....++..
T Consensus 180 ~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------- 243 (471)
T PRK10504 180 ATLMLMPNYTM--------QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGV-VALLLYLL------- 243 (471)
T ss_pred HHHHhCCCccc--------cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHH-HHHHHHHH-------
Confidence 44332222111 11122222222111111111111111111 110001111111000 00111110
Q ss_pred cccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcc
Q 008778 268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT 347 (554)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (554)
++.++ ++ +..+ .+++|||.++...+..++....
T Consensus 244 ~~~~~----------~~------------------------------------~~~~-~~l~~~~~~~~~l~~~~~~~~~ 276 (471)
T PRK10504 244 HARNN----------NR------------------------------------ALFS-LKLFRTRTFSLGLAGSFAGRIG 276 (471)
T ss_pred HHhcC----------CC------------------------------------CccC-HHHhcccchHHHHHHHHHHHHH
Confidence 00000 00 0111 4578899988877766655544
Q ss_pred hhhhhccHHHHHhH-hCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-c-c
Q 008778 348 GLAVMNNMGQIGLA-LGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-A-L 422 (554)
Q Consensus 348 ~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-~-~ 422 (554)
........|.+.+. .|+++.. .......++..++.++.|++.||+++|+.+ ..+..+.++...++.. . .
T Consensus 277 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~------~~~~~~~~~~~~~~~~~~~~ 350 (471)
T PRK10504 277 SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVL------VATTLGLALVSLLFMLVALL 350 (471)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH------HHHHHHHHHHHHHHHhcccc
Confidence 44444566777764 6777543 355666777788889999999999988754 4444444444333332 1 1
Q ss_pred Cc--hhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCC
Q 008778 423 PG--SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQAT 489 (554)
Q Consensus 423 ~~--~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~ 489 (554)
.. .......+.|++.+...+....+..+.+|++.+|.++|+.++.+.+|..+ |+.+.|.+.+..+.
T Consensus 351 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i-g~~i~g~ll~~~g~ 418 (471)
T PRK10504 351 GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSI-GVTIAGLLLGLFGQ 418 (471)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Confidence 21 22344556677777777788888899999999999999999999999999 99999999888764
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-29 Score=251.35 Aligned_cols=389 Identities=13% Similarity=0.075 Sum_probs=251.2
Q ss_pred HHHHHHHHHHHhhccc-hhhhhcHHHHHH-hcCCChhhHHHHHHHHHHHH-hhhhhhhhhcccCCchHHHHHHHHHHHHH
Q 008778 15 LGFVTAVWVQAISGNN-YTFSNYSDALKT-LMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLIGSLEGLVG 91 (554)
Q Consensus 15 ~~~~~~~~~~~~~g~~-~~~~~~~~~i~~-~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~dr~G~r~~~~~g~~l~~~~ 91 (554)
..+..+.+.....-.. +.++...+.+.+ ++|+|.+|.+++.+...+.+ +..++.|++.||+|+|+++.++.+++++.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 4444444443322223 788888888866 89999999999766565555 45788899999999999999999999999
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCC
Q 008778 92 YGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADD 170 (554)
Q Consensus 92 ~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~ 170 (554)
+++.+++.+... ++++++++.|++.|++ +..++.....+++|||+ +||+++|+..+..++|..+...+...+..
T Consensus 114 ~~~~~~a~~~~~--~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~-- 188 (462)
T PRK15034 114 CVWLGIAVQNPN--TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIF-- 188 (462)
T ss_pred HHHHHHHHcccC--CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHH--
Confidence 998887532211 5899999999999998 77888999999999986 59999999976656666555444332110
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHH
Q 008778 171 PAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIIL 250 (554)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (554)
..+...+-.+..... . .....++...+....+. ++..+
T Consensus 189 --------------~~l~~~~G~~~~~~~--~--g~~~~~~~~~~~~~~~~------------------------iv~~i 226 (462)
T PRK15034 189 --------------VPVFAFLGVNGVPQA--D--GSVMSLANAAWIWVPLL------------------------AIATI 226 (462)
T ss_pred --------------HHHHHHhcccccccc--c--cchHHHHHHHHHHHHHH------------------------HHHHH
Confidence 000000000000000 0 00111111111110000 00000
Q ss_pred hhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhh
Q 008778 251 LASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMW 330 (554)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (554)
+ ..+ .. +++++ .+....+.++++|
T Consensus 227 ~---~~~------~~--~~~~~---------------------------------------------~~~~~~~~~~vlk 250 (462)
T PRK15034 227 A---AWS------GM--NDIAS---------------------------------------------SRASIADQLPVLQ 250 (462)
T ss_pred H---HHH------hC--CCccc---------------------------------------------cccCHHHHHHHhC
Confidence 0 000 00 11110 0001123478999
Q ss_pred hhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcchh--hHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHH
Q 008778 331 TVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSI--FVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQ 408 (554)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 408 (554)
+|+.|++.+.+++.++.+..+.+++|++.++ .+++... ...+..+...++++++|+++||+|+|+.. ..+.
T Consensus 251 ~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl------~~~~ 323 (462)
T PRK15034 251 RLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVT------LINF 323 (462)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHH------HHHH
Confidence 9999999999999888888788888888766 3433222 23445678889999999999999998754 3333
Q ss_pred HHHHHHHHH--HHhcc----C-chhHHHHHHHHhhhcccccchHHHHHHhhCC---------------------cchhhH
Q 008778 409 ILMAVGYIL--MAVAL----P-GSLYIGSIIVGLCYGVRLAVTVPTASELFGL---------------------KYYGLI 460 (554)
Q Consensus 409 ~l~~~~~~l--~~~~~----~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~---------------------~~~g~~ 460 (554)
+++++.... ...+. + ....+......++.|.......-++++.+++ ++.|.+
T Consensus 324 i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 403 (462)
T PRK15034 324 IFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAA 403 (462)
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHH
Confidence 333333211 11111 1 1223333334455666666666777777763 278899
Q ss_pred HHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHh
Q 008778 461 YNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 461 ~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
.|+......+|+++ -|.+.|...+.+|. |...|+++.+..+++.++.++.+.|
T Consensus 404 ~G~v~a~G~~Ggf~-~p~~~g~~~~~~g~--------------~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 404 LGFISAIGAVGGFF-IPQAFGMSLNMTGS--------------PVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred HHHHHHHHHcccch-hhHHHHHHHHHcCC--------------cHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999998 69899999999875 8999999999999998888776544
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=252.58 Aligned_cols=349 Identities=15% Similarity=0.080 Sum_probs=240.5
Q ss_pred hhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhc-cCCCchHHHH
Q 008778 34 SNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSR-KIQPLSYWQM 111 (554)
Q Consensus 34 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~-~~~~~s~~~l 111 (554)
+.....+++++|.|.++.+++.+.+.++..+ +++.|++.||+|||++++.+.++.+++.+.+.++... .....+++.+
T Consensus 36 ~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 115 (399)
T PRK05122 36 AVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLL 115 (399)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHH
Confidence 3333457889999999999987777777765 8999999999999999999999988887766554211 0001257788
Q ss_pred HHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH
Q 008778 112 CVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAI 190 (554)
Q Consensus 112 ~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 190 (554)
++.|+++|++.+...+.....+.+++| ++|++++++...+..+|..+++++.+.+.+..+|+..++...+..++..+.
T Consensus 116 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~- 194 (399)
T PRK05122 116 LLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLL- 194 (399)
T ss_pred HHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH-
Confidence 899999999999999888888899996 579999999988888888888888877777666776655443332221111
Q ss_pred hhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhccccc
Q 008778 191 FFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNR 270 (554)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (554)
.+ +.|
T Consensus 195 --~~-------------------------------------------------------------------------~~~ 199 (399)
T PRK05122 195 --AR-------------------------------------------------------------------------PRP 199 (399)
T ss_pred --Hh-------------------------------------------------------------------------cCC
Confidence 00 111
Q ss_pred CCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchhh
Q 008778 271 KRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLA 350 (554)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (554)
++ . + ++ + +..+.++.+++ +|.......+.......
T Consensus 200 ~~-~----------~-------------~~-~------------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 234 (399)
T PRK05122 200 AV-P----------P-------------VK-G------------------ERLPFRRVLGR--VWPYGMGLALASIGFGT 234 (399)
T ss_pred CC-C----------C-------------CC-c------------------cchhHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 11 0 0 00 0 00011222221 12211111112222223
Q ss_pred hhccHHHHHhHhCCCcchhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHH
Q 008778 351 VMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGSLYIG 429 (554)
Q Consensus 351 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~ 429 (554)
...+.+.+.++.|.+......+.+.++..+++++.|++.||+++|+.. ..+..+++++...+... +.....+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (399)
T PRK05122 235 IATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVA------IVSLLVEILGLLLLWLAPSPWMALIG 308 (399)
T ss_pred HHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 345566677777765555566778888899999999999999987643 34444444554444332 33345566
Q ss_pred HHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHH
Q 008778 430 SIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFV 509 (554)
Q Consensus 430 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~ 509 (554)
.++.|++.+..++.......+.+|++++|+++|+.+....++..+ +|.+.|.+.|..+ |+..|+
T Consensus 309 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g---------------~~~~~~ 372 (399)
T PRK05122 309 AALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGI-TGPLAGLVASWFG---------------YPSIFL 372 (399)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC---------------HHHHHH
Confidence 778888888777777777788899999999999999999999988 7889999999876 899999
Q ss_pred HHHHHHHHHHHHHHHh
Q 008778 510 IMAMACIVGFGLDILL 525 (554)
Q Consensus 510 i~~~~~~~~~~~~~~l 525 (554)
+.+++.+++++....+
T Consensus 373 ~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 373 AAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9988888776665544
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-28 Score=247.25 Aligned_cols=364 Identities=11% Similarity=0.023 Sum_probs=257.1
Q ss_pred ccccchhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHH
Q 008778 8 TSSAGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGS 85 (554)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~ 85 (554)
...|+.|..+........+.... +......|++.+++|+++++.++..+...++.. .+++.|++.||+|||+++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~ 92 (394)
T PRK10213 13 AITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFA 92 (394)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHH
Confidence 34456777665555554444433 555556789999999999999997666666664 5899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHH
Q 008778 86 LEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCS 164 (554)
Q Consensus 86 ~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~ 164 (554)
.+++++.++++++ ++++.+++.|+++|++.+...+.....+.|++| ++|++++++..++.++|..+++++.+
T Consensus 93 ~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~ 165 (394)
T PRK10213 93 VLLTLSCLLVSFA-------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGS 165 (394)
T ss_pred HHHHHHHHHHHHH-------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887 899999999999999999999999999999997 46999999999999999988888888
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHH
Q 008778 165 ALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFS 244 (554)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (554)
.+.+..+|++.+....+..++..+... +
T Consensus 166 ~l~~~~gw~~~f~~~~~l~~~~~l~~~--~-------------------------------------------------- 193 (394)
T PRK10213 166 FLGELIGWRNVFNAAAVMGVLCIFWII--K-------------------------------------------------- 193 (394)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHH--H--------------------------------------------------
Confidence 887777788777665543332221110 0
Q ss_pred HHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCch
Q 008778 245 GILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHT 324 (554)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (554)
..|++ + ++++ +...+
T Consensus 194 -----------------------~~p~~-~-------~~~~----------------------------------~~~~~ 208 (394)
T PRK10213 194 -----------------------SLPSL-P-------GEPS----------------------------------HQKQN 208 (394)
T ss_pred -----------------------HCCCC-C-------cccc----------------------------------cchhH
Confidence 11111 0 0000 00112
Q ss_pred HHhhhhhhhHHHHHHHHHhhhcchhhhhccH-HHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCch
Q 008778 325 IFEAMWTVDFWILFVSFLCGVGTGLAVMNNM-GQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRP 401 (554)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~ 401 (554)
.++.+++|.+|...+..++..........+. |.+.++.|+++.. ......+++..+++++.|++.||.+++..
T Consensus 209 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l---- 284 (394)
T PRK10213 209 TFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLAL---- 284 (394)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH----
Confidence 3577889998887665554444443444454 5555667887643 45677788899999999999998543321
Q ss_pred hHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHH
Q 008778 402 IWNAASQILMAVGYILMAV-ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLA 480 (554)
Q Consensus 402 ~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~ 480 (554)
...........+++... .+.+...+..++.|++++...+..++.+.+..+ ++.+.+.+......+++..+ ||.+.
T Consensus 285 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~-G~~l~ 360 (394)
T PRK10213 285 --AGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTC-GAAIG 360 (394)
T ss_pred --HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 12222222222333222 233455567778888888888888878888775 66778888888888999998 99999
Q ss_pred HHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHH
Q 008778 481 GYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVG 518 (554)
Q Consensus 481 g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~ 518 (554)
|.++|..+ +...+...+++.++.
T Consensus 361 G~l~~~~g---------------~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 361 GYALDNIG---------------LTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHhccC---------------hhhHHHHHHHHHHHH
Confidence 99999876 677777766554433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=264.89 Aligned_cols=401 Identities=11% Similarity=0.042 Sum_probs=269.3
Q ss_pred cccchhHHHHHHHHHHHhhccc-hhhhhcHHHHHH----------------------hcCCChhhHHHHHHHHHHHHhh-
Q 008778 9 SSAGKWLGFVTAVWVQAISGNN-YTFSNYSDALKT----------------------LMNLTQLELNNLSVVKDIGKAF- 64 (554)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~----------------------~~~~s~~~~~~~~~~~~~~~~~- 64 (554)
..+.||.+....+......... ...++..+.+++ |++++..+.+++.+.+.+++.+
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~ 92 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII 92 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence 3456777766666555443332 566666666665 8999999999988888888865
Q ss_pred hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCcc
Q 008778 65 GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGP 143 (554)
Q Consensus 65 ~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~ 143 (554)
+++.|++.||+|+|+++..+.++++++.+++.++.. .+++.+++.|+++|++.+..++....++.+|+| ++|++
T Consensus 93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~ 167 (465)
T TIGR00894 93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG-----GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSR 167 (465)
T ss_pred HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH-----cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHH
Confidence 899999999999999999999999999888765422 357888999999999999999999999999998 57999
Q ss_pred chHhhHhhhhhhHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHHHhh-ccccCCCCCcchhhhhhhhhHhHHHHHHH
Q 008778 144 VSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVCLGAIFF-LRETTPASTVDEEKEEAKYFSIINTVAIV 221 (554)
Q Consensus 144 a~gi~~~~~~lg~~i~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (554)
++|+...+..+|.++++++.+.+.+. .+|+..+.+..+..++..+..+. .++.|+....
T Consensus 168 ~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~------------------- 228 (465)
T TIGR00894 168 LLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC------------------- 228 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCC-------------------
Confidence 99999999999999998888887766 37777776665554443332222 1111111000
Q ss_pred HHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCcccccccc
Q 008778 222 VALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVE 301 (554)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (554)
+ ++. +++... +.
T Consensus 229 --------------------------------------------------~-----~~~-~~~~i~------------~~ 240 (465)
T TIGR00894 229 --------------------------------------------------I-----SKF-EKKYIN------------SS 240 (465)
T ss_pred --------------------------------------------------C-----CHH-HHHHHH------------hh
Confidence 0 000 000000 00
Q ss_pred chhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHH
Q 008778 302 DTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWG 378 (554)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~ 378 (554)
.++++...+....++++++++.+|...+..++.....+.+..++|.++++ +|++.. ....++..++.
T Consensus 241 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~ 310 (465)
T TIGR00894 241 ----------LQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFA 310 (465)
T ss_pred ----------cccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHH
Confidence 00000000112346889999999999888887776667777888988865 688753 33566778899
Q ss_pred hHhhHHhhcchhhHhhhcCCCchhH----HHHHHHHHHHHHHHHHh-ccCc-hhHHHHHHHHhhhcccccchHHHHHHhh
Q 008778 379 FFGRIISGSVSEYFIKRAGTPRPIW----NAASQILMAVGYILMAV-ALPG-SLYIGSIIVGLCYGVRLAVTVPTASELF 452 (554)
Q Consensus 379 ~~g~~~~G~l~Dr~g~r~~~~~~~~----~~~~~~l~~~~~~l~~~-~~~~-~~~~~~~l~g~~~g~~~~~~~~~~~~~~ 452 (554)
.++.++.|+++||+++|+...+... ...+..+.++..+.... .... ...+...+.+.+.+...+.......|..
T Consensus 311 ~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 390 (465)
T TIGR00894 311 WLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLA 390 (465)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcC
Confidence 9999999999999987754433221 11111111111111121 1222 2233344444444444444444555666
Q ss_pred CCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 453 GLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 453 ~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
| +..|.+.|+.+..+.+++++ +|.+.|.+.|..+. ++|..+|.+.++..+++.++..+.
T Consensus 391 ~-~~~g~~~g~~~~~~~l~~~i-~p~l~g~~~~~~~~------------~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 391 P-RFLGFIKGITGLPGFIGGLI-ASTLAGNILSQDSK------------NVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred h-hHHHHHHHHHHHHHHHHHHH-HHHhhheeeCCCCc------------hHHHHHHHHHHHHHHHHHHHeeee
Confidence 4 68999999999999999998 89999988876421 138999999998888877665443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=253.42 Aligned_cols=371 Identities=12% Similarity=-0.022 Sum_probs=233.3
Q ss_pred cchhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcC---CChhhHHHHHH---HHHHHHhh-hhhhhhhcccCCchHHHH
Q 008778 11 AGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMN---LTQLELNNLSV---VKDIGKAF-GLLAGLASDRIPAPIILL 82 (554)
Q Consensus 11 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~---~s~~~~~~~~~---~~~~~~~~-~~~~G~l~dr~G~r~~~~ 82 (554)
++++..+..+.+..+..... ..++...|.+.+|++ .+..+.++... ...++..+ +++.|++.||+|||+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~ 97 (432)
T PRK10406 18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML 97 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 45565555554444444443 678889999999984 55665544322 22333323 789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCchH--------HHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhh
Q 008778 83 IGSLEGLVGYGAQWLVVSRKIQPLSY--------WQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVG 153 (554)
Q Consensus 83 ~g~~l~~~~~~~~~~a~~~~~~~~s~--------~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~ 153 (554)
.+.+++++++++++++ +++ ..+++.|+++|+|.|..++...++++||+| ++||++.++...+..
T Consensus 98 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~ 170 (432)
T PRK10406 98 ISVCMMCFGSLVIACL-------PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLI 170 (432)
T ss_pred HHHHHHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHH
Confidence 9999999999999887 444 468889999999999999999999999997 579999998877766
Q ss_pred hhHHHHHHHHHhhc--------CCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHH
Q 008778 154 LSTAIFTDLCSALF--------ADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALY 225 (554)
Q Consensus 154 lg~~i~~~l~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (554)
.|.++.+.+...+. ..++||..|+++.++.++.+... +
T Consensus 171 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~---~------------------------------- 216 (432)
T PRK10406 171 GGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLR---R------------------------------- 216 (432)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHH---h-------------------------------
Confidence 66655443322211 13567777766554443322110 0
Q ss_pred HHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhh
Q 008778 226 LQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVV 305 (554)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (554)
..||. .. ++++
T Consensus 217 ------------------------------------------~~~e~-~~-----~~~~--------------------- 227 (432)
T PRK10406 217 ------------------------------------------QLDET-SQ-----QETR--------------------- 227 (432)
T ss_pred ------------------------------------------cCCCC-ch-----HHHh---------------------
Confidence 01110 00 0000
Q ss_pred hHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhh-hcchhhhhccHHHHHhH-hCCCcch--hhHHHHHHHHhHh
Q 008778 306 AVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCG-VGTGLAVMNNMGQIGLA-LGYVDVS--IFVSLTSIWGFFG 381 (554)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~g 381 (554)
++ ++..+++++++++++|...+...+. ....+.+..++|.++++ +|++... ...+...+...++
T Consensus 228 -------~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~ 295 (432)
T PRK10406 228 -------AL-----KEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLI 295 (432)
T ss_pred -------hh-----cccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 00 0112357788899888776654432 44455667788888765 6887533 3555666777888
Q ss_pred hHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHH---HHHHh-ccCchhH-HHHHHHHhhhcccccchHHHHHHhhCCcc
Q 008778 382 RIISGSVSEYFIKRAGTPRPIWNAASQILMAVGY---ILMAV-ALPGSLY-IGSIIVGLCYGVRLAVTVPTASELFGLKY 456 (554)
Q Consensus 382 ~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~---~l~~~-~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~ 456 (554)
.++.|+++||++||+.. .....+.++.. ..... .+..... ....+..++.+...+....+.+|.+|++.
T Consensus 296 ~~~~G~l~Dr~grr~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~ 369 (432)
T PRK10406 296 QPLIGALSDKIGRRTSM------LCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV 369 (432)
T ss_pred HHHHHHHHHHcCchHHH------HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc
Confidence 89999999999988643 22222111111 11111 1122221 22222223333334456678899999999
Q ss_pred hhhHHHHHHhhhhh-hHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 457 YGLIYNILILNLPL-GSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 457 ~g~~~g~~~~~~~~-g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
|+++.|+.+...++ .+.. .|.+.+. .+..+. |...+++.++..+++.+..+++
T Consensus 370 r~t~~g~~~~~g~~~~g~~-~p~~~~~-l~~~g~--------------~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 370 RALGVGLSYAVANALFGGS-AEYVALS-LKSIGM--------------ETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred cchhhhHHHHHHHHHHHhH-HHHHHHH-HHHhCC--------------CcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999877654 3444 6777774 455553 6667777777777766665554
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=256.61 Aligned_cols=414 Identities=11% Similarity=0.028 Sum_probs=254.1
Q ss_pred chhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhc--------CCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHH
Q 008778 12 GKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLM--------NLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIIL 81 (554)
Q Consensus 12 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~--------~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~ 81 (554)
.++...+.+.+..+..+.. ...+...|.++++| +++..+.+++.+.+.++..+ +++.|++.||+|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~ 88 (479)
T PRK10077 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL 88 (479)
T ss_pred HHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3444444444455555544 55666667788877 88999999988888888865 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc-----cCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhh
Q 008778 82 LIGSLEGLVGYGAQWLVVSR-----KIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLS 155 (554)
Q Consensus 82 ~~g~~l~~~~~~~~~~a~~~-----~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg 155 (554)
+++..++.++.++++++.-. ..+.+.++.++++|+++|++.|..++....+++|++|+ +||+++++...+..+|
T Consensus 89 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G 168 (479)
T PRK10077 89 KIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFG 168 (479)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHH
Confidence 99999999998887763100 00002356778899999999999999999999999974 6999999999998898
Q ss_pred HHHHHHHHHhhc--------CCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHH
Q 008778 156 TAIFTDLCSALF--------ADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQ 227 (554)
Q Consensus 156 ~~i~~~l~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (554)
.++.+.+...+. ...+||+.+++..++.++..+..+++++.|++...+++.++..+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~-------------- 234 (479)
T PRK10077 169 QLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGIL-------------- 234 (479)
T ss_pred HHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHH--------------
Confidence 877544433332 2357888888877766666655555655443210000000000000
Q ss_pred hHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhH
Q 008778 228 VYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAV 307 (554)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (554)
++..+ + ++.++ ...
T Consensus 235 ----------------------------------------~~~~~------------~-------------~~~~~-~~~ 248 (479)
T PRK10077 235 ----------------------------------------RKIMG------------N-------------TLATQ-ALQ 248 (479)
T ss_pred ----------------------------------------HHHcC------------C-------------hhHHH-HHH
Confidence 00000 0 00000 000
Q ss_pred HHHHHhhcCCCCCCCchHHhhhhhhhHHHH---HHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhh
Q 008778 308 VAVEEVKRRPVLGEDHTIFEAMWTVDFWIL---FVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGR 382 (554)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~ 382 (554)
+.....++ +..+ .+..+........ ....+..........++.|.+.++.|.+.. .......++.+.++.
T Consensus 249 ~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~ 323 (479)
T PRK10077 249 EIKHSLDH-GRKT----GGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFT 323 (479)
T ss_pred HHHHHHHH-hhhh----hhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 00000000 0000 0111111111111 111111122222334556777788888753 234556778889999
Q ss_pred HHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh---ccCc--hhHHHHHHHHhhhcccc-cchHHHHHHhhCCcc
Q 008778 383 IISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV---ALPG--SLYIGSIIVGLCYGVRL-AVTVPTASELFGLKY 456 (554)
Q Consensus 383 ~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~--~~~~~~~l~g~~~g~~~-~~~~~~~~~~~~~~~ 456 (554)
++.|+++||++||+.. ..+..+++++.+.+.. .+.. ......++++.+++..+ +....++.|.+|+++
T Consensus 324 ~~~g~l~dr~g~r~~~------i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 397 (479)
T PRK10077 324 VLAIMTVDKFGRKPLQ------IIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI 397 (479)
T ss_pred HHHHHHHHHhcChHHH------HHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH
Confidence 9999999999988754 4455555555444321 1222 22234444555554433 567889999999999
Q ss_pred hhhHHHHHHhhhhhhHHHhhhhHHHHHH------hccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 008778 457 YGLIYNILILNLPLGSFLFSGLLAGYLY------DAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTK 530 (554)
Q Consensus 457 ~g~~~g~~~~~~~~g~~l~~p~i~g~i~------~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~ 530 (554)
|+++.|+.+..+.++.++ ++.+.+.+. |..+ +...|++.++++++++++.+++.+++|
T Consensus 398 r~~~~g~~~~~~~~g~~~-~~~~~p~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 398 RGKALAIAVAAQWIANYF-VSWTFPMMDKNSWLVAHFH---------------NGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhHHHHhccchhhhcc---------------CccHHHHHHHHHHHHHHHHHhccccCC
Confidence 999999999999999988 666665444 3333 667888888777777776666666655
Q ss_pred hh
Q 008778 531 NI 532 (554)
Q Consensus 531 ~~ 532 (554)
++
T Consensus 462 ~~ 463 (479)
T PRK10077 462 GK 463 (479)
T ss_pred CC
Confidence 44
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-29 Score=260.29 Aligned_cols=426 Identities=13% Similarity=0.043 Sum_probs=259.8
Q ss_pred ccchhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhc-----CCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHH
Q 008778 10 SAGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLM-----NLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILL 82 (554)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~-----~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~ 82 (554)
.+.++..+..+.+..+..+.. ...+...|.+.+++ +.+..+.+++.....++.++ .++.|++.||+|||+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~ 90 (502)
T TIGR00887 11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG 90 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 345555555555555555554 55666777776642 35566777887777787765 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHH
Q 008778 83 IGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTD 161 (554)
Q Consensus 83 ~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~ 161 (554)
++.+++.++.++++++.... +..+++.++++|+++|++.|..++....+++|++|+ +||+++++......+|..+++.
T Consensus 91 ~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~ 169 (502)
T TIGR00887 91 MELIIMIIATVASGLSPGSS-PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAI 169 (502)
T ss_pred HHHHHHHHHHHHHHHccCcc-cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888762110 001278899999999999999999999999999985 6999999999988888877666
Q ss_pred HHHhhcC-----------------------CChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHH
Q 008778 162 LCSALFA-----------------------DDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTV 218 (554)
Q Consensus 162 l~~~l~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (554)
+...+.. +++||+.+.++.+++++.++..+++||+|++...+++.+++.+-... .
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~-~- 247 (502)
T TIGR00887 170 VALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMS-A- 247 (502)
T ss_pred HHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHH-H-
Confidence 6543321 23699999999988888888778888887753221111110000000 0
Q ss_pred HHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccc
Q 008778 219 AIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVV 298 (554)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (554)
. .+.+. + + +.+. .
T Consensus 248 --------------------------------------------~----~~~~~-~--~----~~~~------------~ 260 (502)
T TIGR00887 248 --------------------------------------------V----LQVKI-E--A----EPDE------------V 260 (502)
T ss_pred --------------------------------------------H----hcccc-c--c----Cccc------------c
Confidence 0 00000 0 0 0000 0
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCchHHhhhhh---hhHHH----HHHHHHhhhcchhhhhccHHHHHhHhCCCcchh--
Q 008778 299 AVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWT---VDFWI----LFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSI-- 369 (554)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-- 369 (554)
++.+ ++ .+..+.++++++++ ++.+. .....+......+....+.|.+.++.|++....
T Consensus 261 ~~~~-----------~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~ 327 (502)
T TIGR00887 261 EKAS-----------TA--VEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATN 327 (502)
T ss_pred cchh-----------cc--ccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccch
Confidence 0000 00 00011234555542 12211 122222222333455567888888888863210
Q ss_pred ------------hHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh--c--cCchhHHHHHHH
Q 008778 370 ------------FVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV--A--LPGSLYIGSIIV 433 (554)
Q Consensus 370 ------------~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~--~--~~~~~~~~~~l~ 433 (554)
......++.+++.++.+++.||+|||+.. ..+..++++++.++.. . +........++.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 401 (502)
T TIGR00887 328 NAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQ------LMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLA 401 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHH------HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 12334456677889999999999998754 3333333333332221 1 111111222222
Q ss_pred Hhhhc-ccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHH
Q 008778 434 GLCYG-VRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMA 512 (554)
Q Consensus 434 g~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~ 512 (554)
.++++ +..+....+..|.+|++.|+++.|+.+..+.+++++ +|.+.+.+.|..+...+ .+...++...|.+.+
T Consensus 402 ~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~i~~ 475 (502)
T TIGR00887 402 QFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAII-GQFGFLYLAQHGDPTKG-----YPTGIWMGHVLEIFA 475 (502)
T ss_pred HHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHH-HHHHhhhhhcccccccc-----ccccccchHHHHHHH
Confidence 22222 234456677899999999999999999999999998 89999999886431100 000012466788888
Q ss_pred HHHHHHHHHHHHhHHhhhh
Q 008778 513 MACIVGFGLDILLAAKTKN 531 (554)
Q Consensus 513 ~~~~~~~~~~~~l~~~~~~ 531 (554)
++++++.+.. ++.+++++
T Consensus 476 ~~~~~~~i~~-~~lpEt~~ 493 (502)
T TIGR00887 476 LFMFLGILFT-LLIPETKG 493 (502)
T ss_pred HHHHHHHHHh-eEeccCCC
Confidence 8887776654 44466654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=262.71 Aligned_cols=400 Identities=15% Similarity=0.080 Sum_probs=256.8
Q ss_pred hhhhhcHHHHHHhcCCC--------hhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhc
Q 008778 31 YTFSNYSDALKTLMNLT--------QLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSR 101 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s--------~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~ 101 (554)
...+...|.+.++++.+ ..+.+++.+.+.++..+ +++.|++.||+|||++++++.+++.++.+++.+....
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 124 (481)
T TIGR00879 45 GVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFA 124 (481)
T ss_pred chhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44556667777777776 88999987777777754 8999999999999999999999999999988665211
Q ss_pred cCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHH---HhhcCCChHHHHHH
Q 008778 102 KIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLC---SALFADDPAKFLFM 177 (554)
Q Consensus 102 ~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~---~~l~~~~~~~~~~~ 177 (554)
.+++.++++|+++|+|.+..++....++.+++| ++|++++++...+..+|..+++.+. .......+|++.+.
T Consensus 125 ----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~ 200 (481)
T TIGR00879 125 ----LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLG 200 (481)
T ss_pred ----cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHH
Confidence 456789999999999999999999999999997 5699999999999999998877776 33334567888888
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccc
Q 008778 178 LAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAI 257 (554)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (554)
+..+..++.++..+++++.|.....+++.+.... ....
T Consensus 201 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~---------------------------------------- 238 (481)
T TIGR00879 201 LQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARK--SLAR---------------------------------------- 238 (481)
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHH--HHHH----------------------------------------
Confidence 8777776666666666554321100000000000 0000
Q ss_pred cchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhh---hhhhH
Q 008778 258 PVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAM---WTVDF 334 (554)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 334 (554)
.. ++.++ +.+ ..+.. ...+.....+.+.........++.. +.+.+
T Consensus 239 -----~~---~~~~~----~~~------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (481)
T TIGR00879 239 -----LR---GTSGE----DKE------------------LLDEL--ELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLF 286 (481)
T ss_pred -----Hh---CCCCC----cHH------------------HHHHH--HHHHHHHHHHHhhccccHHHHHhcCchhHHHHH
Confidence 00 00000 000 00000 0000000000000000111122222 23344
Q ss_pred HHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHH
Q 008778 335 WILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMA 412 (554)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~ 412 (554)
+...+..+...........+.+.+.++.|++.. ........++..+++++.|+++||+++|+.. ..+.++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~------~~~~~~~~ 360 (481)
T TIGR00879 287 LGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLL------LIGAAGMA 360 (481)
T ss_pred HHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------HHHHHHHH
Confidence 444444444444444455667777788888763 3356677888899999999999999988754 33444444
Q ss_pred HHHHHHH---h--cc------CchhHHHHHHHHhhhcccc-cchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHH
Q 008778 413 VGYILMA---V--AL------PGSLYIGSIIVGLCYGVRL-AVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLA 480 (554)
Q Consensus 413 ~~~~l~~---~--~~------~~~~~~~~~l~g~~~g~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~ 480 (554)
++.+.+. . .+ ........++++.+++... +....+..|.+|+++++++.|+.+...++++++ +|.+.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i-~~~~~ 439 (481)
T TIGR00879 361 ICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFI-VGFLF 439 (481)
T ss_pred HHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4443332 1 11 1122233334444444333 456667799999999999999999999999999 89999
Q ss_pred HHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 008778 481 GYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTK 530 (554)
Q Consensus 481 g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~ 530 (554)
+.+.|..+ |+..|++.+++++++.+..+++.++++
T Consensus 440 ~~~~~~~~---------------~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 440 PTMLESIG---------------VGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHhcC---------------ccceehhHHHHHHHHHHHHheecccCC
Confidence 99999875 788899998888888777666554443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-29 Score=255.44 Aligned_cols=402 Identities=16% Similarity=0.072 Sum_probs=258.6
Q ss_pred hhHHHHHHHHHHHhhcc-chhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHH
Q 008778 13 KWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLV 90 (554)
Q Consensus 13 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~ 90 (554)
+|..+...++....... ...+....|.+++ +|+|.++.+++.+.+.++..+ .++.|++.||+|||+++..+.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 45555444444333332 2455666787776 599999999987777777755 89999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcCC
Q 008778 91 GYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFAD 169 (554)
Q Consensus 91 ~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~ 169 (554)
+.+++++... . .++++.+++.|++.|++.+..++.....+.+++| ++|++++|+...+.++|+.+++++.......
T Consensus 104 ~~~~~~~~~~--~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~ 180 (438)
T TIGR00712 104 VMLLMGFVPW--A-TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW 180 (438)
T ss_pred HHHHHhcccc--c-cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8887665411 0 1467788889999999999988888889999997 5799999999999999998888887665543
Q ss_pred -ChHHHHHHHHHHHHHHH-HHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHH
Q 008778 170 -DPAKFLFMLAIVPFVVC-LGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGIL 247 (554)
Q Consensus 170 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (554)
.+|+..+++..+..++. ++..+++++.|++...
T Consensus 181 ~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~--------------------------------------------- 215 (438)
T TIGR00712 181 FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL--------------------------------------------- 215 (438)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC---------------------------------------------
Confidence 56887777766554443 3333333332211000
Q ss_pred HHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHh
Q 008778 248 IILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFE 327 (554)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (554)
++.++ . + ++.+ + + ..++ .++ +...+....++
T Consensus 216 --------------------~~~~~-~--~----~~~~-----~-----~-~~~~----------~~~-~~~~~~~~~~~ 246 (438)
T TIGR00712 216 --------------------PPIEE-Y--R----NDYP-----D-----D-YNEK----------AEQ-ELTAKEIFMQY 246 (438)
T ss_pred --------------------CCchh-c--c----cccc-----c-----c-cccc----------ccc-ccchHHHHHHH
Confidence 00000 0 0 0000 0 0 0000 000 00000011134
Q ss_pred hhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHH
Q 008778 328 AMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWN 404 (554)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~ 404 (554)
+++++.+|...+..++.....+....+.|.+.++ .|+++. ......+.+.+.+++++.|+++||+++++... ..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~---~~ 323 (438)
T TIGR00712 247 VLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGA---TG 323 (438)
T ss_pred HccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccH---HH
Confidence 7789999988777666555556677788999886 587753 34566788889999999999999997654331 11
Q ss_pred HHHHHHHHHHHHHHHhc---cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHH
Q 008778 405 AASQILMAVGYILMAVA---LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAG 481 (554)
Q Consensus 405 ~~~~~l~~~~~~l~~~~---~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g 481 (554)
........++...+... +........++.|++.............|.+|++++|++.|+.+....+++...+|.+.|
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G 403 (438)
T TIGR00712 324 VFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 403 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHH
Confidence 11111111222211111 122222333344443222112223456799999999999999999888876433899999
Q ss_pred HHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 008778 482 YLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTK 530 (554)
Q Consensus 482 ~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~ 530 (554)
.+.|..+ |+.+|+++.++.+++.+..+++.+++|
T Consensus 404 ~l~~~~g---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 404 YTVDFFG---------------WDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHhcc---------------chHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999876 899999998888888888777666554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-28 Score=249.22 Aligned_cols=378 Identities=12% Similarity=0.092 Sum_probs=241.1
Q ss_pred cchhHHHHHHHHHHHhhccc-hhhhhcHHH-HHHhc--CCChhhHHHHHH-----HHHHHHhh-hhhhhhhcccCCchHH
Q 008778 11 AGKWLGFVTAVWVQAISGNN-YTFSNYSDA-LKTLM--NLTQLELNNLSV-----VKDIGKAF-GLLAGLASDRIPAPII 80 (554)
Q Consensus 11 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~-i~~~~--~~s~~~~~~~~~-----~~~~~~~~-~~~~G~l~dr~G~r~~ 80 (554)
.++|.....+++..+..... ..++.+.|. +.+++ +.++. .+++.+ ...++..+ +++.|++.||+|||++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~ 96 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence 34555555555555555443 667767664 45565 67766 455321 12222323 6788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCchHH--------HHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhh
Q 008778 81 LLIGSLEGLVGYGAQWLVVSRKIQPLSYW--------QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGY 151 (554)
Q Consensus 81 ~~~g~~l~~~~~~~~~~a~~~~~~~~s~~--------~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~ 151 (554)
+..+..++++++++++++ ++++ .++++|+++|++.|..++....+++|++|+ +|++..+....+
T Consensus 97 l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g 169 (438)
T PRK09952 97 LMLTVWMMGIATALIGLL-------PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVG 169 (438)
T ss_pred HHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence 999999999999999988 6766 477899999999999999999999999985 699999999998
Q ss_pred hhhhHHHHHHHHHhhc--------CCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHH
Q 008778 152 VGLSTAIFTDLCSALF--------ADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVA 223 (554)
Q Consensus 152 ~~lg~~i~~~l~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (554)
..+|..++.++...+. ..++||..++++.++.++... ++
T Consensus 170 ~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~----l~----------------------------- 216 (438)
T PRK09952 170 YGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALW----VR----------------------------- 216 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHH----HH-----------------------------
Confidence 8888877766554432 134677766665544322111 11
Q ss_pred HHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccch
Q 008778 224 LYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDT 303 (554)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (554)
+.++| .+ +.++++.
T Consensus 217 --------------------------------------------~~~~e-s~---~~~~~~~------------------ 230 (438)
T PRK09952 217 --------------------------------------------NGMEE-SA---EFEQQQH------------------ 230 (438)
T ss_pred --------------------------------------------HhCCC-Ch---hHHHHHh------------------
Confidence 11111 00 0000000
Q ss_pred hhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHH-HHhhhcchhhhhccHHHHHh-HhCCCcchh--hHHHHHHHHh
Q 008778 304 VVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVS-FLCGVGTGLAVMNNMGQIGL-ALGYVDVSI--FVSLTSIWGF 379 (554)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~--~~~~~~~~~~ 379 (554)
+++ +.+++....+.++++|+.|...+. .++.....+....+.+.+.+ ++|+++... .....++...
T Consensus 231 ---------~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~ 300 (438)
T PRK09952 231 ---------EQA-AAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSC 300 (438)
T ss_pred ---------hcc-cccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 000 000001112346677777766543 33333344455567777765 467765432 3345567778
Q ss_pred HhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHH--Hh-c-cCc-hhHHHHHHHHhhhcccccchHHHHHHhhCC
Q 008778 380 FGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILM--AV-A-LPG-SLYIGSIIVGLCYGVRLAVTVPTASELFGL 454 (554)
Q Consensus 380 ~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~--~~-~-~~~-~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~ 454 (554)
++.++.|+++||++||+.. ..+.++.++..+.+ .. . +.. .+....++.+++.+...+..+++.+|.+|.
T Consensus 301 i~~~~~g~l~Dr~grr~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~ 374 (438)
T PRK09952 301 LTIPCFAWLADRFGRRRVY------ITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA 374 (438)
T ss_pred HHHHHHHHHHHHhCchHHH------HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 8999999999999998654 22222222222111 11 1 222 223344555677777777888999999999
Q ss_pred cchhhHHHHHHhhh-hhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 455 KYYGLIYNILILNL-PLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 455 ~~~g~~~g~~~~~~-~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
+.|+++.|+.+... .+++.+ +|.+.+++.|..+. +|...+.+.+++.+++.+..+.+
T Consensus 375 ~~r~tg~g~~~~~~~~lgg~~-~p~i~g~l~~~~~~-------------~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 375 SYRYSGAGVGYQVASVVGGGF-TPFIAAALVTYFGG-------------SWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred chhHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhcCC-------------CchHHHHHHHHHHHHHHHHHHHc
Confidence 99999999976554 578888 89999999987642 27888888888887777766544
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=243.11 Aligned_cols=344 Identities=15% Similarity=0.045 Sum_probs=234.4
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhh-ccCCCchHHHHHHHHH
Q 008778 39 ALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVS-RKIQPLSYWQMCVFLC 116 (554)
Q Consensus 39 ~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~-~~~~~~s~~~l~~~r~ 116 (554)
.+++|+|+|.++.+++.+.+.++..+ +++.|+++||+|||++++.+.++..++.+...+... .....++++.+++.|+
T Consensus 41 ~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 120 (392)
T PRK12382 41 FVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRL 120 (392)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Confidence 46889999999999987777777755 999999999999999999998887776554322210 0000157889999999
Q ss_pred HHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhhccc
Q 008778 117 MGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRE 195 (554)
Q Consensus 117 l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (554)
++|++.+...+.....+.+++| ++|++++++...+..+|..+++++.+.+....+|+..+....+..++... +.+
T Consensus 121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~- 196 (392)
T PRK12382 121 ILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FNG- 196 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HHH-
Confidence 9999999988888888999997 57999999999988888888888777665555565543332221111110 000
Q ss_pred cCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCC
Q 008778 196 TTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEP 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (554)
+.|++ +
T Consensus 197 ------------------------------------------------------------------------~~~~~-~- 202 (392)
T PRK12382 197 ------------------------------------------------------------------------TVRKV-P- 202 (392)
T ss_pred ------------------------------------------------------------------------hccCC-C-
Confidence 11111 0
Q ss_pred CchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchhhhhccH
Q 008778 276 DVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNM 355 (554)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (554)
+++ + + ..+.++.++ .+|...+...+..........+.
T Consensus 203 -------~~~--------------~-~-------------------~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 239 (392)
T PRK12382 203 -------AHA--------------G-E-------------------RPSLWSVVG--LIWKPGLGLALQGVGFAVIGTFV 239 (392)
T ss_pred -------CCc--------------c-c-------------------CchHHHHHH--HHHHhHHHHHHHHHHHhHHHHHH
Confidence 000 0 0 000111111 11111111111111122233455
Q ss_pred HHHHhHhCCCcchhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhcc-CchhHHHHHHHH
Q 008778 356 GQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVAL-PGSLYIGSIIVG 434 (554)
Q Consensus 356 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~l~g 434 (554)
+.+.++.++++........+++..++++..|++.||+++|+.. ..+..+.+++..++...+ .....+..++.|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 313 (392)
T PRK12382 240 SLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVA------IVSLLVETVGLLLLWLAPTAWVALAGAALTG 313 (392)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeh------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 6677777776655556667788889999999999999988765 444455555554443322 334455667788
Q ss_pred hhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHH
Q 008778 435 LCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMA 514 (554)
Q Consensus 435 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~ 514 (554)
++.+...+.......+.++++++|++.|+.+....++..+ +|.+.|.+.|..+ |+..|.+.+++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i-g~~~~g~l~~~~g---------------~~~~~~~~~~~ 377 (392)
T PRK12382 314 AGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGV-SGPLAGMLATSFG---------------YPSVFLAGAIS 377 (392)
T ss_pred HHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC---------------chHHHHHHHHH
Confidence 8888777777778889999999999999999999999998 8999999999886 89999999988
Q ss_pred HHHHHHHHHHh
Q 008778 515 CIVGFGLDILL 525 (554)
Q Consensus 515 ~~~~~~~~~~l 525 (554)
.+++.++.+..
T Consensus 378 ~~~~~~~~~~~ 388 (392)
T PRK12382 378 AVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHhh
Confidence 88777665443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=240.59 Aligned_cols=348 Identities=14% Similarity=0.144 Sum_probs=240.1
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
+......|.+++|+|++.++.++..+...++..+ +++.|++.||+|||+++..+..+.+++.++++++ ++++
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~-------~~~~ 92 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS-------SSYL 92 (382)
T ss_pred HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh-------CcHH
Confidence 5566678999999999999999987777787765 8999999999999999999999999999999988 8999
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (554)
.+++.|+++|++.+...+.....+.+++|+ +|++++++...+..+|..+++++.+.+.+..+|++.+....+..++..+
T Consensus 93 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~ 172 (382)
T PRK10091 93 MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLA 172 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHH
Confidence 999999999999999888888889999975 6899999999999999988888877776666787776666544433322
Q ss_pred HHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhccc
Q 008778 189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL 268 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (554)
..+. .
T Consensus 173 ~~~~---------------------------------------------------------------------------~ 177 (382)
T PRK10091 173 SIYF---------------------------------------------------------------------------W 177 (382)
T ss_pred HHHH---------------------------------------------------------------------------h
Confidence 1110 0
Q ss_pred ccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcch
Q 008778 269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348 (554)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (554)
.|+. . +++ + . +.....+.++++.+|...+..++.....
T Consensus 178 lp~~-~--------~~~--------------~-~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (382)
T PRK10091 178 VPDI-R--------DEA--------------K-G------------------GLREQFHFLRSPAPWLIFAATMFGNAGV 215 (382)
T ss_pred CCCC-C--------ccc--------------c-c------------------CHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 1111 0 000 0 0 0000134567777777665544433333
Q ss_pred hhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-c-cC
Q 008778 349 LAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-A-LP 423 (554)
Q Consensus 349 ~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-~-~~ 423 (554)
.....+.++++++ .|+++. ....+...++..+++++.|++.||+++|+.. ..+..+.+++.+++.. . +.
T Consensus 216 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~------~~~~~~~~i~~~~~~~~~~~~ 289 (382)
T PRK10091 216 FAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIA------AVTDFIIVLALLMLFFFGGMK 289 (382)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHH------HHHHHHHHHHHHHHHHHHhhH
Confidence 3333455566654 688754 3466788899999999999999999987654 4444445555433322 2 22
Q ss_pred chhHHHHHHHHhhhccccc-chHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCccccccc
Q 008778 424 GSLYIGSIIVGLCYGVRLA-VTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAH 502 (554)
Q Consensus 424 ~~~~~~~~l~g~~~g~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~ 502 (554)
....+..++.+++.+...+ .......+..+++..+.+ ..+....+|.++ ||.+.|.+.|..+.
T Consensus 290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~-Gp~~~G~l~~~~~~------------- 353 (382)
T PRK10091 290 TASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAI-GAYCGGMMLTLGLA------------- 353 (382)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHH-HHHHhHHHHHcccC-------------
Confidence 2333344445554433333 222334444454555544 346677899998 99999999998653
Q ss_pred chHHHHHHHHHHHHHHHHHHHHh
Q 008778 503 CYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 503 ~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
|+..+.+.++++++........
T Consensus 354 -~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 354 -YNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred -cchHHHHHHHHHHHHHHHHHHH
Confidence 8999998887776665544443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=249.57 Aligned_cols=412 Identities=14% Similarity=0.104 Sum_probs=250.7
Q ss_pred cchhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHH
Q 008778 11 AGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG 88 (554)
Q Consensus 11 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~ 88 (554)
+++|..+....+..+..+.. +..+...|.+.+++|+|..+.+++.+...++..+ +++.|++.||+|||+++..+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 95 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 45566555555554544444 5667788999999999999999977777777754 899999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhc
Q 008778 89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF 167 (554)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~ 167 (554)
+++.++++++ ++++.+++.|++.|++.+..++.....+.+++|+ +|++++++...+..+|..+++++...+.
T Consensus 96 ~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 96 SVGTLACGFA-------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred HHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998887 7899999999999999999999999999999975 6999999999999999988888888887
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhh-hhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHH
Q 008778 168 ADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEE-AKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGI 246 (554)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (554)
+..+|++.+.++.++.++.++....+++.+.....+++... +...+..... ............
T Consensus 169 ~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~ 232 (496)
T PRK03893 169 PVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRG----------------EHRIINILLTLA 232 (496)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcc----------------hhHHHHHHHHHH
Confidence 77888888877655544433322222221110000000000 0000000000 000000000000
Q ss_pred HHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHH-------HHhhcCCCC
Q 008778 247 LIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAV-------EEVKRRPVL 319 (554)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 319 (554)
..... .. .. ..... + .-. .-.... ....+
T Consensus 233 ~~~~~------~~---~~---~~~~~------------~---------------~~~-~~~~~~~~~~~~~~~~~~---- 268 (496)
T PRK03893 233 AAAAL------WF---CF---AGNLQ------------N---------------AAI-VAVLGLLCAAIFISFMVQ---- 268 (496)
T ss_pred HHHHH------HH---HH---Hhhhc------------c---------------hhH-HHHHHHHHHHHHHHHHHH----
Confidence 00000 00 00 00000 0 000 000000 00000
Q ss_pred CCCchHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHh-HhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhc
Q 008778 320 GEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGL-ALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRA 396 (554)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~ 396 (554)
....+.+....+.+..+......+....++|.+.+ ++|++.. ....+...++..+|+++.|++.||+++|+
T Consensus 269 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~ 342 (496)
T PRK03893 269 ------SSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRK 342 (496)
T ss_pred ------hcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 00001122222222222222222334567788885 6788753 34777888999999999999999999886
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHh-ccCc--hhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHH
Q 008778 397 GTPRPIWNAASQILMAVGYILMAV-ALPG--SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSF 473 (554)
Q Consensus 397 ~~~~~~~~~~~~~l~~~~~~l~~~-~~~~--~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 473 (554)
.. ..+..+..+..+.... .+.. ...+..++.++......+..+.++.|.+|++++|+++|+.+....+++.
T Consensus 343 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ 416 (496)
T PRK03893 343 AY------VCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGA 416 (496)
T ss_pred HH------HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHH
Confidence 53 3333333333322221 1221 1222222333322333467778889999999999999999999999999
Q ss_pred HhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHH
Q 008778 474 LFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIV 517 (554)
Q Consensus 474 l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~ 517 (554)
+ +|.+.|.+.|..+ |+..+...++.+.+
T Consensus 417 l-gp~l~g~l~~~~g---------------~~~~~~~~~~~~~~ 444 (496)
T PRK03893 417 L-APILGALIAQRLD---------------LGTALASLSFSLTF 444 (496)
T ss_pred H-HHHHHHHHhccCC---------------hHHHHHHHHHHHHH
Confidence 8 9999999999886 77777655544433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=247.08 Aligned_cols=354 Identities=16% Similarity=0.146 Sum_probs=241.9
Q ss_pred chhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchH
Q 008778 30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY 108 (554)
Q Consensus 30 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~ 108 (554)
...++...|.+++++|+|.++.+++.+...++..+ .++.|++.||+|||+++..+.++..++.++++++ +++
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 83 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-------TSL 83 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-------hhH
Confidence 36677888999999999999999987777777765 8999999999999999999999999999999888 789
Q ss_pred HHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHH-HhhcCCChHHHHHHHHHHHHHH-
Q 008778 109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLC-SALFADDPAKFLFMLAIVPFVV- 185 (554)
Q Consensus 109 ~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~-~~l~~~~~~~~~~~~~~~~~~~- 185 (554)
+.+++.|++.|++.+...+....++.+++|+ +|++++++...+..+|..+++++. ..+....+|+..+.......++
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (379)
T TIGR00881 84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIV 163 (379)
T ss_pred HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999985 699999999999999998887544 4444445676665554433333
Q ss_pred HHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhh
Q 008778 186 CLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKS 265 (554)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (554)
.++..++.++.++....
T Consensus 164 ~~~~~~~~~~~~~~~~~--------------------------------------------------------------- 180 (379)
T TIGR00881 164 SLICFLLLRDSPQSCGL--------------------------------------------------------------- 180 (379)
T ss_pred HHHHheeeCCCcccccc---------------------------------------------------------------
Confidence 23332223222211000
Q ss_pred cccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhh
Q 008778 266 WNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGV 345 (554)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (554)
++++ ++++ ++ .+++++ ++++.........++++++|.+|.+.+..++..
T Consensus 181 ---~~~~---------~~~~-----~~-----~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (379)
T TIGR00881 181 ---PPAE---------EMPN-----EE-----PDGDAE---------KKEEELTKKQIFLQYVLLNKVLWYISLGYVFVY 229 (379)
T ss_pred ---Cccc---------cCcc-----cc-----cccccc---------cccccccchHHHHHHHHhcchHHHHHHHHHHHH
Confidence 0000 0000 00 000000 000000111223467888999998887777666
Q ss_pred cchhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh--
Q 008778 346 GTGLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-- 420 (554)
Q Consensus 346 ~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-- 420 (554)
........+.+.+.++ .|+++. ....+...++..+++++.|++.||..+|+.. ...........++......
T Consensus 230 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 306 (379)
T TIGR00881 230 VVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRG---PLAVFFMALIIVSLLVYWLNP 306 (379)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcch---HHHHHHHHHHHHHHHHHhcCc
Confidence 6555666778888765 687753 3466778889999999999999997554432 1111111112222222211
Q ss_pred -ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccC
Q 008778 421 -ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQA 488 (554)
Q Consensus 421 -~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~ 488 (554)
.+.....+..++.|++.+...+....+..|.+|++++|++.|+.+....+++.+ +|.+.|.+.|..|
T Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g 374 (379)
T TIGR00881 307 AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGIL-AGLPLGYLADGFG 374 (379)
T ss_pred chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhh-hhhhHHHHHHhhc
Confidence 111223344455565544444556678899999999999999999999999998 8999999999876
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=243.33 Aligned_cols=356 Identities=13% Similarity=-0.042 Sum_probs=242.2
Q ss_pred cccccchhHHHHHHHHHHHhhcc-chhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHH
Q 008778 7 YTSSAGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIG 84 (554)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g 84 (554)
++.+++.|...+...+..+.... ...+....|.+++++|+|..+.++..+.+.++..+ +++.|++.||+|||+++..+
T Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 84 (406)
T PRK15402 5 ARLGRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAG 84 (406)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 33344455555555555444332 24445566889999999999999977777777765 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHH
Q 008778 85 SLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLC 163 (554)
Q Consensus 85 ~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~ 163 (554)
..+..++.++++++ ++++.+++.|+++|++.+...+.....+.|++|+ +|+++.++......++..+++++.
T Consensus 85 ~~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 157 (406)
T PRK15402 85 VAFFILTCLAILLA-------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVG 157 (406)
T ss_pred HHHHHHHHHHHHHH-------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887 7899999999999999999888888999999986 578889988887778887777777
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHH
Q 008778 164 SALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIF 243 (554)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (554)
+.+.+..+|++.++...+..++..+..+..
T Consensus 158 ~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 187 (406)
T PRK15402 158 AALIHVLPWRGMFVLFAALAALSFFGLWRA-------------------------------------------------- 187 (406)
T ss_pred HHHHHccCccHHHHHHHHHHHHHHHHHHHh--------------------------------------------------
Confidence 766665566666655444433332221110
Q ss_pred HHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCc
Q 008778 244 SGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDH 323 (554)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (554)
.|++.+. .++ +.+ ..+...
T Consensus 188 -------------------------~~~~~~~------~~~---------------~~~---------------~~~~~~ 206 (406)
T PRK15402 188 -------------------------MPETAGR------VGE---------------KLS---------------LKELGR 206 (406)
T ss_pred -------------------------CCCCCcc------ccc---------------ccc---------------HHHHHH
Confidence 1111000 000 000 000011
Q ss_pred hHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHh-HhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCc
Q 008778 324 TIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGL-ALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPR 400 (554)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~ 400 (554)
+.++++++|.+|...+...+............|.+++ ++|+++.. .......++..+|+++.|+++||+++|+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~-- 284 (406)
T PRK15402 207 DYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLI-- 284 (406)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--
Confidence 3367888999888777665444333334445566654 46877543 244455677889999999999999988754
Q ss_pred hhHHHHHHHHHHHHHHHHHh-----cc-CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHH
Q 008778 401 PIWNAASQILMAVGYILMAV-----AL-PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFL 474 (554)
Q Consensus 401 ~~~~~~~~~l~~~~~~l~~~-----~~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l 474 (554)
..+..+++++..++.. .+ .....+..+++|++.+...+......... +++++|++.+..+..+.++..+
T Consensus 285 ----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~ 359 (406)
T PRK15402 285 ----RMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTV 359 (406)
T ss_pred ----HHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHH
Confidence 3444444444433321 11 22345667778888877666555555444 3589999999999999999998
Q ss_pred hhhhHHHHHHhccC
Q 008778 475 FSGLLAGYLYDAQA 488 (554)
Q Consensus 475 ~~p~i~g~i~~~~~ 488 (554)
|+.+.+.+++..+
T Consensus 360 -g~~~~~~l~~~~~ 372 (406)
T PRK15402 360 -GIELSKHAYLGGG 372 (406)
T ss_pred -HHHHHHhcccCCc
Confidence 8999999998876
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-27 Score=238.88 Aligned_cols=357 Identities=13% Similarity=0.057 Sum_probs=236.4
Q ss_pred cHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHH-HhhccCCCchHHHHHH
Q 008778 36 YSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWL-VVSRKIQPLSYWQMCV 113 (554)
Q Consensus 36 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~-a~~~~~~~~s~~~l~~ 113 (554)
+.+.+.+|+|+|.++.+++.+.+.++..+ .++.|++.||+|||+++..+..+++++++++.. .... ++++.+++
T Consensus 35 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~ 110 (402)
T TIGR00897 35 WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGH----ANYPLILL 110 (402)
T ss_pred hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC----ccHHHHHH
Confidence 44566688999999999987777777754 899999999999999999999999998776532 1111 46888889
Q ss_pred HHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHH-HHHHHHHhhcCCChHHHHHHHHHHHHHHH-HHHH
Q 008778 114 FLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTA-IFTDLCSALFADDPAKFLFMLAIVPFVVC-LGAI 190 (554)
Q Consensus 114 ~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~-i~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~ 190 (554)
.|+++|+|.+...+.....+.+++| ++|++++|+..++.++|.. +++++.+.+.+..+|+..++.......+. ++..
T Consensus 111 ~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 190 (402)
T TIGR00897 111 FYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIAL 190 (402)
T ss_pred HHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887777777888885 6799999999999888864 44555555554433322211111111110 0000
Q ss_pred hhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhccccc
Q 008778 191 FFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNR 270 (554)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (554)
++. +++
T Consensus 191 ~~~--------------------------------------------------------------------------~~~ 196 (402)
T TIGR00897 191 FSN--------------------------------------------------------------------------KDI 196 (402)
T ss_pred hcc--------------------------------------------------------------------------CCC
Confidence 000 111
Q ss_pred CCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchhh
Q 008778 271 KRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLA 350 (554)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (554)
++.+ ++++ +++ ..+.....++++++|.+|...+..++.....+.
T Consensus 197 ~~~~-------~~~~--------------~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (402)
T TIGR00897 197 FTPQ-------HMQT--------------REK---------------FSELGKAATILFTNPNVLLGGMVRIINTIGLFG 240 (402)
T ss_pred CCcc-------cccC--------------Ccc---------------hhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHH
Confidence 0000 0000 000 000011245788999999887776665555566
Q ss_pred hhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh--ccC-ch
Q 008778 351 VMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV--ALP-GS 425 (554)
Q Consensus 351 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~--~~~-~~ 425 (554)
...+.|.+.+++|++... ...+...+++.++++..|+++||+++|+... ........+..+.+..... .+. ..
T Consensus 241 ~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~--~~~~l~~~~~~~~l~~~~~~~~~~~~~ 318 (402)
T TIGR00897 241 FAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR--WFGGVGCGIFTLALYYIPQHFGHSFAV 318 (402)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH--HHHHHHHHHHHHHHHHHHHccCCcHHH
Confidence 677888888888887543 3556778899999999999999999876430 0011111111111111111 122 23
Q ss_pred hHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchH
Q 008778 426 LYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYR 505 (554)
Q Consensus 426 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~ 505 (554)
..+..++.|++.+...+ ......+.. ++++|+++|+.+...++++.+ +|.+.|.+.|..| +.
T Consensus 319 ~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~-gp~i~g~l~~~~g---------------~~ 380 (402)
T TIGR00897 319 ALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFL-APAIAVLFIGFFG---------------AI 380 (402)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcc---------------hH
Confidence 44566677777665433 334556654 578999999999999999998 8999999999986 78
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 008778 506 LVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 506 ~~f~i~~~~~~~~~~~~~~l~ 526 (554)
..|++.+++.+++.++..+++
T Consensus 381 ~~~~~~a~~~~i~~~~~~~~~ 401 (402)
T TIGR00897 381 GVVWIFAALYVVSAFLTAFIR 401 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 899999988888888777653
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=239.40 Aligned_cols=340 Identities=15% Similarity=0.120 Sum_probs=236.8
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
.....+.|.+.+++|.|.++.+++.+.+.++..+ +++.|++.||+|||+++..+.++..++...++++ ++++
T Consensus 23 ~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~-------~~~~ 95 (381)
T PRK03633 23 AVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM-------VGFW 95 (381)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccHH
Confidence 4566778999999999999999988888888765 8999999999999999999999999999998888 8899
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (554)
.+++.|+++|++.+...+.....+.++.| ++|++++++...+..+|..+++++.+.+.....+...+....... ..+
T Consensus 96 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~--~~~ 173 (381)
T PRK03633 96 SWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVLA--AIL 173 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHH--HHH
Confidence 99999999999999988877777777775 579999999999999999887777665543321111111100000 000
Q ss_pred HHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhccc
Q 008778 189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL 268 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (554)
... .. +
T Consensus 174 ~~~------------------------------------------------------------------------~~--~ 179 (381)
T PRK03633 174 PLL------------------------------------------------------------------------FT--R 179 (381)
T ss_pred HHH------------------------------------------------------------------------Hh--c
Confidence 000 00 1
Q ss_pred ccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcch
Q 008778 269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348 (554)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (554)
.+++ . + ++ ++..+.++.+++|.++......+......
T Consensus 180 ~~~~-~----------~---------------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (381)
T PRK03633 180 ILNQ-Q----------A---------------------------EN-----HDSTSIWPMLKLRQARLGVNGCIISGIVL 216 (381)
T ss_pred ccCC-C----------C---------------------------CC-----CCCCCHHHHHHhcchHHHHHHHHHHHHHH
Confidence 1111 0 0 00 00112356778888776544333322223
Q ss_pred hhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccCchh
Q 008778 349 LAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPGSL 426 (554)
Q Consensus 349 ~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 426 (554)
.....++|.+.++.|.++. ....+...++..++++..|++.||+++|+.. ..+..+..++..... .....
T Consensus 217 ~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l------~~~~~~~~~~~~~~~--~~~~~ 288 (381)
T PRK03633 217 GSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVL------RVQVFVVILGSIAML--SQAAM 288 (381)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHH------HHHHHHHHHHHHHHh--hhHHH
Confidence 3344567888888887753 3466777889999999999999999988643 333444444433322 11222
Q ss_pred HHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHH
Q 008778 427 YIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRL 506 (554)
Q Consensus 427 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~ 506 (554)
.....+.|++.+...+.....+.|..++++++...+..+...++|+.+ +|.+.|++.|..+ ++.
T Consensus 289 ~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~i-gp~~~G~l~~~~g---------------~~~ 352 (381)
T PRK03633 289 APALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLL-GPSFTAMLMQNYS---------------DNL 352 (381)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC---------------ccH
Confidence 334455666555556777777788888888888888888889999998 9999999999886 788
Q ss_pred HHHHHHHHHHHHHH
Q 008778 507 VFVIMAMACIVGFG 520 (554)
Q Consensus 507 ~f~i~~~~~~~~~~ 520 (554)
.|.+.+.+.++..+
T Consensus 353 ~f~~~~~~~l~~~~ 366 (381)
T PRK03633 353 LFIMIASVSFIYLL 366 (381)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887776665543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-27 Score=240.90 Aligned_cols=350 Identities=13% Similarity=0.049 Sum_probs=222.2
Q ss_pred chhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHH-HHHHHHH--HH----hhhhhhhhhcccCCchHHHHH
Q 008778 12 GKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNN-LSVVKDI--GK----AFGLLAGLASDRIPAPIILLI 83 (554)
Q Consensus 12 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~-~~~~~~~--~~----~~~~~~G~l~dr~G~r~~~~~ 83 (554)
.||......++..+..... ..++.+.|++.+|++.++.+.++ ..+.... +. +.+++.|++.||+|||++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~ 91 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV 91 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence 4555555545545555544 78899999999999998887655 3222221 11 226889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCchHH--------HHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhh
Q 008778 84 GSLEGLVGYGAQWLVVSRKIQPLSYW--------QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGL 154 (554)
Q Consensus 84 g~~l~~~~~~~~~~a~~~~~~~~s~~--------~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~l 154 (554)
+..++++++++++++ ++++ .++++|+++|++.+...+....+++||+| ++|++++++...+..+
T Consensus 92 ~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~ 164 (434)
T PRK15075 92 TLSIMASGTLLIAFV-------PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQV 164 (434)
T ss_pred HHHHHHHHHHHHHhC-------CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHH
Confidence 999999999999987 6766 36788999999999998888899999997 4699999999887777
Q ss_pred hHHHHHHHHHhhc--------CCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHH
Q 008778 155 STAIFTDLCSALF--------ADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYL 226 (554)
Q Consensus 155 g~~i~~~l~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (554)
|..+++.++..+. +..+|++.++++.+...+.. +.+
T Consensus 165 g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~----~~~-------------------------------- 208 (434)
T PRK15075 165 AVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIF----LIR-------------------------------- 208 (434)
T ss_pred HHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH----HHH--------------------------------
Confidence 7665554444331 23456655554332111000 000
Q ss_pred HhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhh
Q 008778 227 QVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVA 306 (554)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (554)
++++| . + +..+
T Consensus 209 -----------------------------------------~~~~e-~---~---~~~~--------------------- 219 (434)
T PRK15075 209 -----------------------------------------RSLEE-T---E---EFLA--------------------- 219 (434)
T ss_pred -----------------------------------------HhcCC-C---H---HHHH---------------------
Confidence 11111 0 0 0000
Q ss_pred HHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHH-HHhhhcchhhhhccHHHHHhH-hCCCcch--hhHHHHHHHHhHhh
Q 008778 307 VVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVS-FLCGVGTGLAVMNNMGQIGLA-LGYVDVS--IFVSLTSIWGFFGR 382 (554)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~g~ 382 (554)
+++++ +.....++..++++.+..... .++.....+....+.|.++++ +|+++.. .......+++.+++
T Consensus 220 ------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 291 (434)
T PRK15075 220 ------RKHRP--SMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWL 291 (434)
T ss_pred ------hhhcc--ccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 00000 011112334455555544322 223333344566778888876 6887543 35556778889999
Q ss_pred HHhhcchhhHhhhcCCCchhHHHHHHHHHHH-HHHH--HHhccCc--hhHHHHHHHHhhhcccccchHHHHHHhhCCcch
Q 008778 383 IISGSVSEYFIKRAGTPRPIWNAASQILMAV-GYIL--MAVALPG--SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYY 457 (554)
Q Consensus 383 ~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~-~~~l--~~~~~~~--~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~ 457 (554)
++.|+++||++||+.. ..+.++..+ .... ....++. .......+.+++++...+....+..|.+|++.+
T Consensus 292 ~~~g~l~Dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~r 365 (434)
T PRK15075 292 PIGGALSDRIGRRPVL------IAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVR 365 (434)
T ss_pred HHHHHHHHHhcchHHH------HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCcc
Confidence 9999999999988643 222221111 1111 1112222 222334455667766666666788999999999
Q ss_pred hhHHHHHHhhhh-hhHHHhhhhHHHHHHhccC
Q 008778 458 GLIYNILILNLP-LGSFLFSGLLAGYLYDAQA 488 (554)
Q Consensus 458 g~~~g~~~~~~~-~g~~l~~p~i~g~i~~~~~ 488 (554)
+++.|+.+.... +++.+ +|.+.|.+.|..+
T Consensus 366 g~~~g~~~~~~~~~~g~~-~p~~~g~i~~~~g 396 (434)
T PRK15075 366 TAGFSLAYSLATAIFGGF-TPAISTWLIHVTG 396 (434)
T ss_pred chheeHHHHHHHHHHhhh-HHHHHHHHHHhcC
Confidence 999999765544 45776 8999999999886
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=250.58 Aligned_cols=378 Identities=14% Similarity=0.097 Sum_probs=259.4
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
...+...|.+.+++|.+..+.+|+.+.+.++..+ .++.|++.||+|||++++.+..++.+++++++++ ++++
T Consensus 19 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~ 91 (485)
T TIGR00711 19 TIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA-------PNLE 91 (485)
T ss_pred HHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc-------CCHH
Confidence 5567788999999999999999988888787765 8999999999999999999999999999999887 7899
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (554)
.++++|+++|++.+...+....++.+++| ++|++++++...+..+|..+++.+.+.+.+..+|++.++...+..++..+
T Consensus 92 ~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~ 171 (485)
T TIGR00711 92 LMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVV 171 (485)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHH
Confidence 99999999999999999999999999997 57999999999999999988888888777777888888877766555544
Q ss_pred HHhh-ccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCC-cchh-h-hHH-HHHHHHHhhhcccccchhhh
Q 008778 189 AIFF-LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNK-SETL-A-LIF-SGILIILLASPVAIPVYSFI 263 (554)
Q Consensus 189 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~~-~~~~~~~~~~~~~~~~~~~~ 263 (554)
..++ .++.++. .. .+.+.........+..........+. ..+. . ... ..+...... ..+..
T Consensus 172 ~~~~~~~~~~~~-~~-------~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--- 237 (485)
T TIGR00711 172 VAFFILPRDKPA-AS-------ENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAI---IAFVV--- 237 (485)
T ss_pred HHHHHcCCcccc-cc-------CCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHH---HHHHH---
Confidence 4433 3332211 11 11121111111111111111100000 0000 0 000 000000000 00000
Q ss_pred hhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHh
Q 008778 264 KSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLC 343 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (554)
+ +.+.+ +.....+++++|.++...+..++
T Consensus 238 ----~--------------------------------------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 266 (485)
T TIGR00711 238 ----W--------------------------------------------ELTDD---NPLVDLRLFKYRNFTIGCVYMSL 266 (485)
T ss_pred ----H--------------------------------------------HHcCC---CCccCHHHHcCCChHHHHHHHHH
Confidence 0 00000 01111467888888887776665
Q ss_pred hhcchhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh
Q 008778 344 GVGTGLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV 420 (554)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~ 420 (554)
.....+....+.|.+.++ .|+++. ........++..+++++.|++.||+++|+.. ..+..+++++..++..
T Consensus 267 ~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~------~~g~~~~~~~~~~~~~ 340 (485)
T TIGR00711 267 LGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLV------TIGLILYAVGFYWRAF 340 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHH------HHHHHHHHHHHHHHhc
Confidence 555555566778888876 688754 3466677888999999999999999988654 4555555666555441
Q ss_pred --c--cC-chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhcc
Q 008778 421 --A--LP-GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQ 487 (554)
Q Consensus 421 --~--~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~ 487 (554)
. .+ .......++.|++.+...+.......+..|++++|++.|+.+..+.+|+.+ |+.+.|.+.++.
T Consensus 341 ~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i-g~~i~g~~~~~~ 411 (485)
T TIGR00711 341 TFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSI-GTALITTILTNR 411 (485)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 1 12 234456678888888777666677778889999999999999999999999 899999988754
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=244.53 Aligned_cols=376 Identities=17% Similarity=0.130 Sum_probs=251.0
Q ss_pred ccchhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHH
Q 008778 10 SAGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLE 87 (554)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l 87 (554)
++++|..+..+++..+..+.. ...+.+.|.+.+++|.+..+.+++.+...++..+ .++.|++.||+|||+++..+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 445666666666665555544 6677888999999999999999987777777655 89999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhh
Q 008778 88 GLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSAL 166 (554)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l 166 (554)
..++.++..++ ++++.+++.|++.|++.+..++.....+.|++|+ +|++++|+...+..+|..+++.+.+.+
T Consensus 92 ~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 164 (398)
T TIGR00895 92 FSVFTLLCALA-------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164 (398)
T ss_pred HHHHHHHHHHc-------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH
Confidence 99999888877 7899999999999999999999999999999985 699999999999999998888888777
Q ss_pred cCCChHHHHHHHHH-HHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHH
Q 008778 167 FADDPAKFLFMLAI-VPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSG 245 (554)
Q Consensus 167 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (554)
.+..+|+..+.+.. +..+..++...++++.+.....+ .++ ........
T Consensus 165 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~---------------------------- 213 (398)
T TIGR00895 165 IPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK--RPE-TVRRIVNA---------------------------- 213 (398)
T ss_pred hhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc--CHH-HHHHHHHH----------------------------
Confidence 77777777766664 44444444444444433211110 000 00000000
Q ss_pred HHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchH
Q 008778 246 ILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTI 325 (554)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (554)
..++. + +++ + ++.+++++ + .+ ......
T Consensus 214 ----------------------~~~~~-~--------~~~-----~----~~~~~~~~----------~-~~--~~~~~~ 240 (398)
T TIGR00895 214 ----------------------IAPQM-Q--------AEA-----Q----SALPEQKA----------T-QG--TKRSVF 240 (398)
T ss_pred ----------------------HHHhc-c--------ccc-----c----cccccccc----------c-cc--hhhHHH
Confidence 00000 0 000 0 00000000 0 00 000001
Q ss_pred Hhhh---hhhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCc
Q 008778 326 FEAM---WTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPR 400 (554)
Q Consensus 326 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~ 400 (554)
+.++ +++..+.+.+..++..........+.|.+.++.|+++. ....+...++..+++++.|+++||+++|...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 318 (398)
T TIGR00895 241 KALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTA-- 318 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH--
Confidence 1122 22333444444444333444455566766677888753 3466778889999999999999999987321
Q ss_pred hhHHHHHHHHHHHHHHHHH-hccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhH
Q 008778 401 PIWNAASQILMAVGYILMA-VALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLL 479 (554)
Q Consensus 401 ~~~~~~~~~l~~~~~~l~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i 479 (554)
....+.......+.. ..+....++..++.|++.+...+...+++.|.+|+++++++.|+......++..+ +|.+
T Consensus 319 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-g~~~ 393 (398)
T TIGR00895 319 ----LLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAII-GPIL 393 (398)
T ss_pred ----HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHh
Confidence 222222222222222 2333455667788899988888889999999999999999999999999999998 8999
Q ss_pred HHHH
Q 008778 480 AGYL 483 (554)
Q Consensus 480 ~g~i 483 (554)
.|++
T Consensus 394 ~G~l 397 (398)
T TIGR00895 394 AGYL 397 (398)
T ss_pred HHhc
Confidence 8875
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=251.76 Aligned_cols=381 Identities=14% Similarity=0.113 Sum_probs=254.2
Q ss_pred hhhhhcHHHHHHhcCCC---hhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 008778 31 YTFSNYSDALKTLMNLT---QLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPL 106 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s---~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~ 106 (554)
|..+.+.|.+.+|+|++ ..+.+++.+.+.++..+ +++.|+++||+|||++++++.++..++.++++++ +
T Consensus 106 ~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~-------~ 178 (505)
T TIGR00898 106 YSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS-------P 178 (505)
T ss_pred ecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc-------c
Confidence 44446778899999999 89999988888888865 8999999999999999999999999999999888 8
Q ss_pred hHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 008778 107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVV 185 (554)
Q Consensus 107 s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~ 185 (554)
+++.+++.|++.|++.+...+....++.|++|+ +|+.+.++...+..+|.++++.+.. ++.+ |++.++...++.++
T Consensus 179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~--wr~~~~~~~i~~~~ 255 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAY-FIPD--WRWLQLAVSLPTFL 255 (505)
T ss_pred cHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHH-HhhH--HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999975 6999999998888888866555543 3332 88888777777777
Q ss_pred HHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhh
Q 008778 186 CLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKS 265 (554)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (554)
..+..++++|+|++...+++.++..+... .. .
T Consensus 256 ~~~~~~~~~esp~~l~~~~~~~~a~~~l~--~~---------------------------------------------~- 287 (505)
T TIGR00898 256 FFLLSWFVPESPRWLISQGRIEEALKILQ--RI---------------------------------------------A- 287 (505)
T ss_pred HHHHHHhcCCChHHHHHCCCHHHHHHHHH--HH---------------------------------------------H-
Confidence 66666777776544222111111110000 00 0
Q ss_pred cccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhh
Q 008778 266 WNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGV 345 (554)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (554)
++.+. .. .+ +. .+. . . +++....++..+.++++++|.++...+...+..
T Consensus 288 --~~~~~-~~-~~---~~--------------~~~-~--~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 336 (505)
T TIGR00898 288 --KINGK-KL-PA---EV--------------LSL-S--L-------EKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLW 336 (505)
T ss_pred --HHcCC-CC-CH---HH--------------Hhh-h--h-------hhhhhhccCCCcHHHHhCChHHHHHHHHHHHHH
Confidence 00000 00 00 00 000 0 0 000000111345688999998877666544333
Q ss_pred cchhhhhccHHHHHhHhCCCcchhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-ccC-
Q 008778 346 GTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-ALP- 423 (554)
Q Consensus 346 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-~~~- 423 (554)
.......+..+......+.+. .......++..+.+.++.+++.||+|||+.. ..+..+.+++++++.. .+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~------~~~~~~~~~~~l~~~~~~~~~ 409 (505)
T TIGR00898 337 FTTAFSYYGLVLDLGNLGGNI-YLDLFISGLVELPAKLITLLLIDRLGRRYTM------AASLLLAGVALLLLLFVPVDL 409 (505)
T ss_pred HHHHHHHHHHhccccccCCCh-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHHHHHHHcCCCc
Confidence 222222222222233344432 2233456777888999999999999998754 4444445555444433 222
Q ss_pred -chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCccccccc
Q 008778 424 -GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAH 502 (554)
Q Consensus 424 -~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~ 502 (554)
....+..++.+++.+..++....+..|.+|++.|+++.|+.+....+|+++ +|.+.+ +.+ .+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i-~p~i~~-~~~-~~-------------- 472 (505)
T TIGR00898 410 YFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSII-SPFLVY-LGE-KW-------------- 472 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHH-HhHHHH-HHH-HH--------------
Confidence 233344455566666677788889999999999999999999999999998 898888 433 32
Q ss_pred chHHHHHHHHHHHHHHHHHHHHh
Q 008778 503 CYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 503 ~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
+..++.+.+++.+++.++.+++
T Consensus 473 -~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 473 -LFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred -HhhHHHHHHHHHHHHHHHHHcC
Confidence 5667777777777776665444
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-26 Score=235.80 Aligned_cols=375 Identities=13% Similarity=0.068 Sum_probs=244.2
Q ss_pred hhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHH
Q 008778 13 KWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLV 90 (554)
Q Consensus 13 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~ 90 (554)
.+..+.....+.+..+.. ...+.+.|++++++|+|.++.++..+.+.+++.+ +++.|++.||+|||+++..+..++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 344434434444444544 6777889999999999999999987788888765 89999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccCC-CccchHhhHhhhhhhHHHHHHHHHhhcCC
Q 008778 91 GYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGLSTAIFTDLCSALFAD 169 (554)
Q Consensus 91 ~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~~-rg~a~gi~~~~~~lg~~i~~~l~~~l~~~ 169 (554)
+.+++..+... ++++.++++|+++|+|.|...+.....+.++.|++ |+..+++.....++|..+++.++..+...
T Consensus 104 ~~~l~~~~~~a----~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~ 179 (438)
T PRK10133 104 GAALFWPAAEI----MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_pred HHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99886321111 78999999999999999999999999999887765 55579999999999987776665433210
Q ss_pred C------------------hHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhc
Q 008778 170 D------------------PAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDF 231 (554)
Q Consensus 170 ~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (554)
+ .|+..+. .+|+..+.....+...+..
T Consensus 180 ~~~~~~~~~~~~l~~~~~~~w~~~~~------------------------------~~w~~~f~~~~~v~~~~~~----- 224 (438)
T PRK10133 180 NVPHQSQDVLDKMTPEQLSAYKHSLV------------------------------LSVQTPYMIIVAIVLLVAL----- 224 (438)
T ss_pred CCcccchhhhhccChhhHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHH-----
Confidence 0 1111110 1122222111100000000
Q ss_pred CCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHH
Q 008778 232 LPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVE 311 (554)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (554)
+ +. .. +.|+. . .+++ ++
T Consensus 225 -------------------~-----~~-----~~--~~p~~-~-------~~~~--------------~~---------- 241 (438)
T PRK10133 225 -------------------L-----IM-----LT--KFPAL-Q-------SDNH--------------SD---------- 241 (438)
T ss_pred -------------------H-----HH-----Hh--cCCCC-C-------cccc--------------cc----------
Confidence 0 00 00 12221 0 0000 00
Q ss_pred HhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHH-hH-hCCCcc--hhhHHHHHHHHhHhhHHhhc
Q 008778 312 EVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIG-LA-LGYVDV--SIFVSLTSIWGFFGRIISGS 387 (554)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~ 387 (554)
++ ......+.++++++|.++...+..++..........+.+.+. ++ .|+++. ...+..+.++..+|++..|+
T Consensus 242 -~~---~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~ 317 (438)
T PRK10133 242 -AK---QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_pred -cc---ccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000112346788999988776666655555555555666664 43 688764 44778889999999999999
Q ss_pred chhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhh
Q 008778 388 VSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILN 467 (554)
Q Consensus 388 l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 467 (554)
+.||+++|+.. ..+..+.++++++..............+.|++.+..+|...+...+.+| ++.+++.++...
T Consensus 318 l~~r~g~~~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~-~~~~~as~l~~~- 389 (438)
T PRK10133 318 LISRFAPHKVL------AAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLG-QDTKYGSSFIVM- 389 (438)
T ss_pred HHHHcCHHHHH------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccc-hhhccchhHHhH-
Confidence 99999998754 3333333333333222222233456778999999999999999999886 457888888864
Q ss_pred hhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHH
Q 008778 468 LPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACI 516 (554)
Q Consensus 468 ~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~ 516 (554)
..+++.+ +|.+.|.+.|..+. .+..|++...+.+
T Consensus 390 ~~~g~~~-~~~i~G~l~~~~g~--------------~~~~~~v~~~~~~ 423 (438)
T PRK10133 390 TIIGGGI-VTPVMGFVSDAAGN--------------IPTAELIPALCFA 423 (438)
T ss_pred HhccchH-HHHHHHHHHHhccc--------------hHHHHHHHHHHHH
Confidence 5567777 78899999998752 4677765554433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-27 Score=235.92 Aligned_cols=329 Identities=14% Similarity=0.075 Sum_probs=232.6
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
..++...|.+++++|+|.++.+++.+...++..+ +++.|++.||+|+|+++.++..+..++.+.+ .+ ++++
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~-------~~~~ 88 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA-------PGTA 88 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh-------ccHH
Confidence 4567889999999999999999988888787765 8999999999999999999998888887776 44 6788
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhccCCCccchHhhHhhhhhhHHHHHHHHHhhcCCC--hHHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADD--PAKFLFMLAIVPFVVCL 187 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~ 187 (554)
.+++.|++.|+|.+...+.....+.+++|++|++++|+...+.++|..+++.+...+.+.. .|+..+....+..++..
T Consensus 89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~ 168 (355)
T TIGR00896 89 LLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL 168 (355)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 8889999999999998878888889999989999999999998899888777766554432 25544433222111111
Q ss_pred HHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcc
Q 008778 188 GAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN 267 (554)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (554)
. ..++
T Consensus 169 ~--~~~~------------------------------------------------------------------------- 173 (355)
T TIGR00896 169 L--AWIP------------------------------------------------------------------------- 173 (355)
T ss_pred H--HHhh-------------------------------------------------------------------------
Confidence 0 0000
Q ss_pred cccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcc
Q 008778 268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT 347 (554)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (554)
+.+++ +++ ++ + ......++++|+|.+|...+..++....
T Consensus 174 ~~~~~----------~~~---------------------------~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (355)
T TIGR00896 174 QVRRR----------VAA---------------------------NQ--T--TTRLTPVRIWRSPLAWQVTVFFGLQSGL 212 (355)
T ss_pred hhccc----------cCC---------------------------CC--C--CCCCCCchhhcCHhHHHHHHHHHHHHHH
Confidence 00000 000 00 0 0011225677889888877666655555
Q ss_pred hhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccCch
Q 008778 348 GLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPGS 425 (554)
Q Consensus 348 ~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 425 (554)
.+....+.|.+.++.|++.. ....+...++.+++++..|++.||+++|+.. ...+..+++++...+.......
T Consensus 213 ~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 287 (355)
T TIGR00896 213 YYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGI-----VAVLAVLQLVGLCGLLFAPMHG 287 (355)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHH-----HHHHHHHHHHHHHHHHHhhhhH
Confidence 55666788889888888753 3477788999999999999999999554322 1333344444443333322212
Q ss_pred hHHHHHHHHhhhcccccchHHHHHHhhC-CcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCC
Q 008778 426 LYIGSIIVGLCYGVRLAVTVPTASELFG-LKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQAT 489 (554)
Q Consensus 426 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~ 489 (554)
.....++.|++.|..++...+.+.+..+ +++++...|+.+...++++.+ +|.+.|++.|..+.
T Consensus 288 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 288 LWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAAL-GPLFVGVLHDISGN 351 (355)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcc
Confidence 2234667888888888776666655544 466789999999889999898 89999999999874
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-27 Score=236.64 Aligned_cols=340 Identities=12% Similarity=0.058 Sum_probs=244.5
Q ss_pred hhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 008778 33 FSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM 111 (554)
Q Consensus 33 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l 111 (554)
.....|.+.++++.+..+.+++.+...++..+ +++.|++.||+|||++++.+.++..++..+..++.... +.+++.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 95 (365)
T TIGR00900 18 TQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG--GLNIWQV 95 (365)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC--CCcHHHH
Confidence 44555778888999999999988777777754 89999999999999999999999988888877761110 0289999
Q ss_pred HHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH
Q 008778 112 CVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAI 190 (554)
Q Consensus 112 ~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 190 (554)
++.|+++|++.+...+....++.|++|+ +|++++|+...+.++|..+++++.+.+.+..+|++.++...+..++..+..
T Consensus 96 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 96 YVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999975 699999999999999998888887777766677776666554444433322
Q ss_pred hhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhccccc
Q 008778 191 FFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNR 270 (554)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (554)
+.++++++ +
T Consensus 176 ~~~~~~~~-----------------------------------------------------------------------~ 184 (365)
T TIGR00900 176 VSVRIPEL-----------------------------------------------------------------------A 184 (365)
T ss_pred HhcccccC-----------------------------------------------------------------------C
Confidence 21111100 0
Q ss_pred CCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchhh
Q 008778 271 KRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLA 350 (554)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (554)
++ ++++ .+++ . .+ +.....++++++|.++...+..++.......
T Consensus 185 ~~---------~~~~-------------~~~~--~-------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (365)
T TIGR00900 185 AS---------EIQA-------------LSNA--V-------LR-----DTREGIKFVLKNPLLRTLLLLALLFNLVFAP 228 (365)
T ss_pred Cc---------cccc-------------cchh--H-------HH-----HHHhHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 00 0000 0000 0 00 0011246677888888777666555444444
Q ss_pred hh-ccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhcc--Cc
Q 008778 351 VM-NNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVAL--PG 424 (554)
Q Consensus 351 ~~-~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~ 424 (554)
.. ...|.+.++ +|.++. ........++..+++++.|++.||+++|+.. ..+..+.++........+ .+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 302 (365)
T TIGR00900 229 AIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALM------TGAIFVIGLAILVVGLTPPNFP 302 (365)
T ss_pred HHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH------HHHHHHHHHHHHHHHhhchhHH
Confidence 44 566777765 677654 3366677888999999999999999887643 333333444444333322 33
Q ss_pred hhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccC
Q 008778 425 SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQA 488 (554)
Q Consensus 425 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~ 488 (554)
...+..++.|++.+...+...++..|.+|+++++++.|+.+....++..+ +|.+.|.+.|..|
T Consensus 303 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-g~~~~g~l~~~~g 365 (365)
T TIGR00900 303 LFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPL-GLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 45567778888888888888889999999999999999999999999998 8999999998753
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=235.77 Aligned_cols=351 Identities=12% Similarity=0.038 Sum_probs=238.3
Q ss_pred hhhhhcHHHHHHhcCCChhhH-----HHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008778 31 YTFSNYSDALKTLMNLTQLEL-----NNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQ 104 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~-----~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~ 104 (554)
..+..+.|.+.+++|++..+. +++.+...+... .+++.|++.||+|||++++.+.++..++.+++++.
T Consensus 31 ~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------ 104 (408)
T PRK09874 31 SLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA------ 104 (408)
T ss_pred HHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH------
Confidence 445667888889999986653 555555555554 48999999999999999999999999998888777
Q ss_pred CchHHHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 008778 105 PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPF 183 (554)
Q Consensus 105 ~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~ 183 (554)
++++.+++.|++.|++.+. .+.....+.+++| ++|++++|+...+..+|..+++++.+.+.+..+|+..+....+..
T Consensus 105 -~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 182 (408)
T PRK09874 105 -QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVL 182 (408)
T ss_pred -hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 7899999999999998654 5666677888887 469999999999989998888888777766556666655554433
Q ss_pred HHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhh
Q 008778 184 VVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFI 263 (554)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (554)
++..+..++..
T Consensus 183 ~~~~~~~~~~~--------------------------------------------------------------------- 193 (408)
T PRK09874 183 FLCFLVTLFCI--------------------------------------------------------------------- 193 (408)
T ss_pred HHHHHHHHHHh---------------------------------------------------------------------
Confidence 33322211100
Q ss_pred hhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHH-HH
Q 008778 264 KSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVS-FL 342 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 342 (554)
+++++ . .+++ ++ . +..+..+.+++|+++..... .+
T Consensus 194 ----~~~~~-~-------~~~~---------------~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~ 229 (408)
T PRK09874 194 ----RENFQ-P-------VSKK---------------EM--L---------------HMREVVTSLKNPKLVLSLFVTTL 229 (408)
T ss_pred ----ccCcc-c-------ccch---------------hh--h---------------HHHHHHHhCcCCchHHHHHHHHH
Confidence 11100 0 0000 00 0 00012344566665543222 22
Q ss_pred hhhcchhhhhccHHHHHhHhCCCcc------hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHH
Q 008778 343 CGVGTGLAVMNNMGQIGLALGYVDV------SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYI 416 (554)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~ 416 (554)
...........+.+.+.++.+.+.. ....+..+++..++++..|++.||+++|+.. ..+..+..++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~------~~~~~~~~~~~~ 303 (408)
T PRK09874 230 IIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKIL------ITALIFSVLLLI 303 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhH------HHHHHHHHHHHH
Confidence 2222222233455666666433221 1234456778888999999999999988654 333344444443
Q ss_pred HHHh-ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCC
Q 008778 417 LMAV-ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGG 495 (554)
Q Consensus 417 l~~~-~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~ 495 (554)
.... .+....++..++.|++.+...+...+.+.+..+++++|+.+|+.+....+|..+ ||.+.|.+.|..+
T Consensus 304 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~-gp~~~G~l~~~~g------- 375 (408)
T PRK09874 304 PMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVT-GPLMGAAISANYG------- 375 (408)
T ss_pred HHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHh-hHHHHHHHHhhcc-------
Confidence 3333 233445566778888888888888888888888899999999999999999998 9999999998876
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHH
Q 008778 496 NTCVGAHCYRLVFVIMAMACIVGFGLDIL 524 (554)
Q Consensus 496 ~~~~~~~~~~~~f~i~~~~~~~~~~~~~~ 524 (554)
|+..|++.+++.+++.++.++
T Consensus 376 --------~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 376 --------FRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHH
Confidence 899999999888887766544
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=232.69 Aligned_cols=328 Identities=14% Similarity=0.067 Sum_probs=230.5
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
..+....|.+.+++|.|.++.+++.+...++..+ +++.|++.||+|||+++..+.++..++.++++++ ++++
T Consensus 22 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~ 94 (385)
T TIGR00710 22 DMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-------NNIE 94 (385)
T ss_pred HHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------ccHH
Confidence 4555667999999999999999987777777765 8999999999999999999999999999998887 7899
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (554)
.+++.|+++|++.+...+.....+.|++|+ +|+++.|+......+|..+++.+.+.+.+..+|+..+....+..++..+
T Consensus 95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (385)
T TIGR00710 95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSA 174 (385)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999985 6999999999999999988888877776666677666554443333322
Q ss_pred HHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhccc
Q 008778 189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL 268 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (554)
..+... +
T Consensus 175 ~~~~~~-------------------------------------------------------------------------~ 181 (385)
T TIGR00710 175 LIFFIL-------------------------------------------------------------------------P 181 (385)
T ss_pred HHHHhC-------------------------------------------------------------------------C
Confidence 211110 0
Q ss_pred ccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcch
Q 008778 269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348 (554)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (554)
++++ ++++ ++. + ....+.++.+++|.+|...+...+.....
T Consensus 182 ~~~~---------~~~~--------------~~~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (385)
T TIGR00710 182 ETLP---------YEAR--------------IQI--S--------------TYFETFLLLLKSKMFWGYALIYGASFGGF 222 (385)
T ss_pred CCCC---------Cccc--------------CCH--H--------------HHHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 0000 0000 000 0 00112356778888887766655444444
Q ss_pred hhhhccHHHHHh-HhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh---cc
Q 008778 349 LAVMNNMGQIGL-ALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV---AL 422 (554)
Q Consensus 349 ~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~---~~ 422 (554)
.....+.|.+++ ++|+++.. ...+...++..+++++.|++.||+++|+.. ..+..++.++..++.. ..
T Consensus 223 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 296 (385)
T TIGR00710 223 FAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLL------RMGLILFAVSAVLLEITAILG 296 (385)
T ss_pred HHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH------HHHHHHHHHHHHHHHHHHHhc
Confidence 445556676665 57877543 366677888999999999999999988754 3333333333322221 11
Q ss_pred -C-c-hhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHh
Q 008778 423 -P-G-SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYD 485 (554)
Q Consensus 423 -~-~-~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~ 485 (554)
. . ......++.|++.+...+.......|..| ++++++.++.+.....++.+.+| +.+.+.+
T Consensus 297 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~-~~~~~~~ 360 (385)
T TIGR00710 297 LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGY-LVSLIHG 360 (385)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHH-HHHhccc
Confidence 1 1 23445566778878777777778888875 67899999999888776666445 5664433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-26 Score=230.20 Aligned_cols=382 Identities=11% Similarity=0.023 Sum_probs=247.2
Q ss_pred HHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhh
Q 008778 23 VQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVS 100 (554)
Q Consensus 23 ~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~ 100 (554)
..+..|.. ...+...|.+++++|+|..|.+++.+...+++.+ +++.|++.||+|||++++.+.++++++.++...+..
T Consensus 11 ~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~ 90 (410)
T TIGR00885 11 LFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE 90 (410)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444554 4556888999999999999999988888888765 899999999999999999999999999988654311
Q ss_pred ccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCC--hHHHHHH
Q 008778 101 RKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADD--PAKFLFM 177 (554)
Q Consensus 101 ~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~--~~~~~~~ 177 (554)
. ++++.+++.|++.|+|.|...+....++.+..|+ +|++.+++.....++|..+++.+...++... .+.....
T Consensus 91 ~----~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~ 166 (410)
T TIGR00885 91 I----MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL 166 (410)
T ss_pred h----ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence 1 5799999999999999999999888899898875 5899999999999999988777766553211 0000000
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCc-chhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhccc
Q 008778 178 LAIVPFVVCLGAIFFLRETTPASTV-DEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVA 256 (554)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (554)
....+...+. .+....+|+..+.....+......+
T Consensus 167 ---------------~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~----------------------------- 202 (410)
T TIGR00885 167 ---------------DKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL----------------------------- 202 (410)
T ss_pred ---------------hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Confidence 0000000000 0011223444443222111110000
Q ss_pred ccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHH
Q 008778 257 IPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWI 336 (554)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (554)
+ .+. +.|+. +. +++ + + .....+.++++|+|.++.
T Consensus 203 ~-----~~~--~~p~~-~~-------~~~-------------~--~----------------~~~~~~~~~~~~~~~~~~ 236 (410)
T TIGR00885 203 I-----MLT--KMPAL-NH-------SDA-------------K--Q----------------ISFSASLSRLARIRHYRE 236 (410)
T ss_pred H-----HHh--cCCCC-Cc-------ccc-------------c--c----------------ccchhhHHHHHhChhHHH
Confidence 0 000 22321 00 000 0 0 000112356788999988
Q ss_pred HHHHHHhhhcchhhhhccHHHHHhHhCCC--cc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHH
Q 008778 337 LFVSFLCGVGTGLAVMNNMGQIGLALGYV--DV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMA 412 (554)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~ 412 (554)
..+..+++.+.......+++.+.++.+.+ +. ....+.+.....+||++++++.||+++|+.. .++..+.+
T Consensus 237 ~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l------~i~~~~~~ 310 (410)
T TIGR00885 237 GVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVL------MAYAIIGM 310 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH------HHHHHHHH
Confidence 77777777777666667788888765432 22 2245556677889999999999999888744 44444444
Q ss_pred HHHHHHHhccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCC
Q 008778 413 VGYILMAVALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTA 492 (554)
Q Consensus 413 ~~~~l~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~ 492 (554)
+..++....+........++.|++.+..+|+..+...+..+++....+.++.... +|+.+ .|.+.|.+.|..+....
T Consensus 311 ~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~-~p~l~G~~~d~~~~~~~ 387 (410)
T TIGR00885 311 ALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGI-VPPLQGFIIDMKEIAAA 387 (410)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccch-HHHHHHHHHHHhccccc
Confidence 4444444433434456777888999999999999999999866655555555544 89998 79999999996531100
Q ss_pred CCCcccccccchHHHHHHHHHHHH
Q 008778 493 GGGNTCVGAHCYRLVFVIMAMACI 516 (554)
Q Consensus 493 ~~~~~~~~~~~~~~~f~i~~~~~~ 516 (554)
++++.+|++...+.+
T Consensus 388 ---------~~~~~~~~~~~~~~~ 402 (410)
T TIGR00885 388 ---------PAVNTSFILPLLCFA 402 (410)
T ss_pred ---------CccchHHHHHHHHHH
Confidence 026777876554433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=227.97 Aligned_cols=366 Identities=13% Similarity=0.114 Sum_probs=243.4
Q ss_pred hhHHHHHHHHHHHhhccchhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHH
Q 008778 13 KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVG 91 (554)
Q Consensus 13 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~ 91 (554)
++..+...++.... ....++...+.+++++|+|..+.+...+...+... .+++.|++.||+|||+++..+.++..++
T Consensus 12 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~ 89 (400)
T PRK11646 12 KYFLLIDNMLVVLG--FFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAG 89 (400)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHH
Confidence 35555444444332 22445666667889999999999997666666654 5899999999999999999999999999
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcCCC
Q 008778 92 YGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADD 170 (554)
Q Consensus 92 ~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~ 170 (554)
.+++.+. ++++.+++.|+++|++.+...+.....+.+++| ++|++++|+......+|..+++++.+.+. ..
T Consensus 90 ~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~ 161 (400)
T PRK11646 90 FATMAIA-------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY 161 (400)
T ss_pred HHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 9998887 789999999999999998888888888999997 57999999999999999988888887776 55
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHH
Q 008778 171 PAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIIL 250 (554)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (554)
+|+..+.+..+..++..+.....
T Consensus 162 g~~~~f~~~~~~~~~~~i~~~~~--------------------------------------------------------- 184 (400)
T PRK11646 162 DFRLVCATGAVLFVLAAAFNAWL--------------------------------------------------------- 184 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh---------------------------------------------------------
Confidence 67766665544433322211110
Q ss_pred hhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhh
Q 008778 251 LASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMW 330 (554)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (554)
.|++ . +++ . + .+...+++++++
T Consensus 185 ------------------~~~~-~--------~~~--------------~-~----------------~~~~~~~~~~~~ 206 (400)
T PRK11646 185 ------------------LPAY-K--------LST--------------V-R----------------TPVREGMTRVLR 206 (400)
T ss_pred ------------------CCcc-c--------ccc--------------c-c----------------hhhHHHHHHHHc
Confidence 0100 0 000 0 0 000113456778
Q ss_pred hhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhh-HhhhcCCCchhHHHHH
Q 008778 331 TVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEY-FIKRAGTPRPIWNAAS 407 (554)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr-~g~r~~~~~~~~~~~~ 407 (554)
+|.++...+..+...........+.|.+.++.+.++.. ...+..++....+....+++.|| ++.++.. ..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~------~~~ 280 (400)
T PRK11646 207 DKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRL------MAG 280 (400)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH------HHH
Confidence 88887655544433222223345667777776555432 24444455454444444555554 4433322 344
Q ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhc
Q 008778 408 QILMAVGYILMAVAL-PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDA 486 (554)
Q Consensus 408 ~~l~~~~~~l~~~~~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~ 486 (554)
..+.+++..++...+ .....+..++++++.+...+...+++.+..|++++|+++|+.+...+++..+ ||.+.|.+.|.
T Consensus 281 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-g~~l~G~l~~~ 359 (400)
T PRK11646 281 LLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAI-GYIGGGWLFDL 359 (400)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHh-cccchHHHHHH
Confidence 444555554443333 3334445566777777777888889999999999999999999999999998 99999999998
Q ss_pred cCCCCCCCCcccccccchHHHHHHHHHHHHHHHHH
Q 008778 487 QATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGL 521 (554)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~ 521 (554)
.+... .....+.+.+++.+++.+.
T Consensus 360 ~~~~~-----------~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 360 GKALN-----------QPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HhhcC-----------CcchHHHHHHHHHHHHHHH
Confidence 64210 1345666656555555443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=237.82 Aligned_cols=363 Identities=12% Similarity=-0.034 Sum_probs=245.9
Q ss_pred hhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 008778 32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ 110 (554)
Q Consensus 32 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~ 110 (554)
......|.+.++++.+..+.+++.+...++..+ +++.|++.||+|||+++..+..+.+++.+..+..... ..++++.
T Consensus 35 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 112 (417)
T PRK10489 35 LLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL--PEPSLLA 112 (417)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc--CCCcHHH
Confidence 345567888888999999999988888888765 8999999999999999999888888877665432100 1157888
Q ss_pred HHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 008778 111 MCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGA 189 (554)
Q Consensus 111 l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 189 (554)
+++.|+++|++.+...++....+.+++|+ +|+++.++...+.++|..+++++.+.+.+..+|++.+.+..+..++..+.
T Consensus 113 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (417)
T PRK10489 113 IYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLP 192 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 89999999999988888888889999975 68999999998889999888888777766555666655554443333322
Q ss_pred HhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccc
Q 008778 190 IFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLN 269 (554)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (554)
.+.+++.+
T Consensus 193 ~~~l~~~~------------------------------------------------------------------------ 200 (417)
T PRK10489 193 LLRLPALP------------------------------------------------------------------------ 200 (417)
T ss_pred HHhCCCCC------------------------------------------------------------------------
Confidence 22111100
Q ss_pred cCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchh
Q 008778 270 RKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGL 349 (554)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (554)
|++ . +++++ . + ......+.++++|.++...+..++... ..
T Consensus 201 ~~~-~------~~~~~----------------~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 240 (417)
T PRK10489 201 PPP-Q------PREHP----------------L--R--------------SLLAGFRFLLASPVVGGIALLGGLLTM-AS 240 (417)
T ss_pred CCC-c------ccccc----------------h--H--------------HHHHHHHHHHcChHHHHHHHHHHHHHH-HH
Confidence 000 0 00000 0 0 001123456677776655444333222 22
Q ss_pred hhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccC-ch
Q 008778 350 AVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALP-GS 425 (554)
Q Consensus 350 ~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~ 425 (554)
.+..+.|.+.++ +|+++. ....+...++..++.++.+++.||.++++.+ ..+.++.+++.+++..... ..
T Consensus 241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l------~~~~~~~~~~~~~~~~~~~~~~ 314 (417)
T PRK10489 241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLM------LLSTLGSFLAVGLFGLMPMWIL 314 (417)
T ss_pred hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHH------HHHHHHHHHHHHHHHccchHHH
Confidence 345567888877 788753 3466777888999999999999985544322 3444444555444433222 23
Q ss_pred hHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchH
Q 008778 426 LYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYR 505 (554)
Q Consensus 426 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~ 505 (554)
..+..++.|++.+...+...+++.+..|++.+|++.|+.+....+|..+ ||.+.|.+.|..+ +.
T Consensus 315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-g~~l~G~l~~~~g---------------~~ 378 (417)
T PRK10489 315 AVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAI-GAALLGGLGAMMT---------------PV 378 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhH-HHHHHHHHHHHhc---------------hh
Confidence 4556667777776666667778899999999999999999999999998 9999999999886 56
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhh
Q 008778 506 LVFVIMAMACIVGFGLDILLAAKTK 530 (554)
Q Consensus 506 ~~f~i~~~~~~~~~~~~~~l~~~~~ 530 (554)
..+.+.+++.++..++.....++.|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 379 ASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccc
Confidence 7777776665555554444444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=228.77 Aligned_cols=346 Identities=15% Similarity=0.022 Sum_probs=234.7
Q ss_pred hHHHHHHHHHHHhhccchhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHH
Q 008778 14 WLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGY 92 (554)
Q Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~ 92 (554)
+..+..+++.+........+....|++++++|.+.++.+++.+.+.++..+ ++++|++.||+|||+++..+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 85 (401)
T PRK11043 6 GFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGS 85 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHH
Confidence 344444444433333334455556788999999999999988777787765 8999999999999999999999999999
Q ss_pred HHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCCh
Q 008778 93 GAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDP 171 (554)
Q Consensus 93 ~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~ 171 (554)
++++++ ++++.+++.|+++|++.+...+.....+.+++|+ +++++.+......+++..+++.+.+.+.+..+
T Consensus 86 ~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g 158 (401)
T PRK11043 86 LGMLWV-------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG 158 (401)
T ss_pred HHHHHh-------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 988887 7899999999999999888877777889999986 47888888888888888888777777766667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHh
Q 008778 172 AKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILL 251 (554)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (554)
|+..+.......++..+..+.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 182 (401)
T PRK11043 159 WQAIFATLFAITLLLILPTLRLKP-------------------------------------------------------- 182 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCC--------------------------------------------------------
Confidence 777666554443333222211110
Q ss_pred hhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhh
Q 008778 252 ASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWT 331 (554)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (554)
++++ ++ + + ++..+.++++++
T Consensus 183 -----------------~~~~---------~~----------------~-~-----------------~~~~~~~~~~~~ 202 (401)
T PRK11043 183 -----------------SKKA---------RK----------------Q-S-----------------QDALTFKQLLKS 202 (401)
T ss_pred -----------------CCCc---------cc----------------c-c-----------------hHHHHHHHHHcC
Confidence 0000 00 0 0 001234677888
Q ss_pred hhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHH
Q 008778 332 VDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQI 409 (554)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 409 (554)
|++|...+...+.......+..+.|.+.++.|+++.. .......++..+|++..+++.||+++|+.. ........
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~---~~~~~~~~ 279 (401)
T PRK11043 203 KTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL---PWLLVLFA 279 (401)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH---HHHHHHHH
Confidence 8887655544444344444556677788888887543 344556678888999999999999887643 11111122
Q ss_pred HHHHHHHHHHh--c-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhc
Q 008778 410 LMAVGYILMAV--A-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDA 486 (554)
Q Consensus 410 l~~~~~~l~~~--~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~ 486 (554)
+..+.+.+... . +.....+...+.+++.+..++.......+..| +++|++.|+.++.+..++.. ++.+.|.+.|.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~-~~~~~g~l~~~ 357 (401)
T PRK11043 280 VSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFL-ASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHH-HHHHHHHccCC
Confidence 22222222221 1 12233445566777777777776666667764 68999999999998888887 78888888775
Q ss_pred c
Q 008778 487 Q 487 (554)
Q Consensus 487 ~ 487 (554)
.
T Consensus 358 ~ 358 (401)
T PRK11043 358 P 358 (401)
T ss_pred C
Confidence 4
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=236.14 Aligned_cols=367 Identities=16% Similarity=0.144 Sum_probs=269.0
Q ss_pred HHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHh
Q 008778 41 KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG 119 (554)
Q Consensus 41 ~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~G 119 (554)
..+++++.+|.+++.+....|+++ +++.|++.||+|.|+++..+.++.++++++..++.. .+++.+++.|++||
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-----~~~~~~~~~R~lqG 139 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-----IGFYLLLVLRFLQG 139 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-----hcchhhHHHHHHhH
Confidence 457999999999998888899987 789999999999999999999999999999998844 35677788999999
Q ss_pred chhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHHH-hhcccc
Q 008778 120 NSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVCLGAI-FFLRET 196 (554)
Q Consensus 120 ig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 196 (554)
++.|..+++.....++|.| ++|++..++..++..+|.++.-|+.+.+-.. .+|+..+.+.+....+..+.. ++..
T Consensus 140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~-- 217 (466)
T KOG2532|consen 140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS-- 217 (466)
T ss_pred HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc--
Confidence 9999999999999999997 5899999999999999999999999988876 778887777665554443332 2222
Q ss_pred CCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCC
Q 008778 197 TPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPD 276 (554)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (554)
++|+++
T Consensus 218 -----------------------------------------------------------------------d~P~~h--- 223 (466)
T KOG2532|consen 218 -----------------------------------------------------------------------DSPSKH--- 223 (466)
T ss_pred -----------------------------------------------------------------------CCcccC---
Confidence 222220
Q ss_pred chhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcC--CCCCCCchHHhhhhhhhHHHHHHHHHhhhcchhhhhcc
Q 008778 277 VEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRR--PVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNN 354 (554)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (554)
+... ++|.++.++.+.+ .+++...++++++++|.+|..+++.++.....+.+..+
T Consensus 224 --------~~is---------------~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y 280 (466)
T KOG2532|consen 224 --------PNIS---------------EKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTY 280 (466)
T ss_pred --------CCCC---------------HHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0111111111111 11114567899999999999999999888888889999
Q ss_pred HHHHHhH-hCCC--cchhhHHHHHHHHhHhhHHhhcchhhHhhhcCC----CchhHHHHHHHHHHHHHHHHHhcc--Cch
Q 008778 355 MGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGT----PRPIWNAASQILMAVGYILMAVAL--PGS 425 (554)
Q Consensus 355 ~~~~~~~-~g~~--~~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~----~~~~~~~~~~~l~~~~~~l~~~~~--~~~ 425 (554)
.|.|+++ ++++ +.+...++..+...+..+++|.++||+.+| .+ .|..+..++....++.++.+...+ ...
T Consensus 281 ~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~ 359 (466)
T KOG2532|consen 281 LPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRL 359 (466)
T ss_pred hhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcch
Confidence 9999987 6877 445577788999999999999999999886 32 244555566665555555544322 222
Q ss_pred hHHHHHHHHhhh-cccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccch
Q 008778 426 LYIGSIIVGLCY-GVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCY 504 (554)
Q Consensus 426 ~~~~~~l~g~~~-g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~ 504 (554)
..+.+..+..+. |...+.......+. .+++.+..+|+.+....+.+++ +|.+.|.+.. .+. .++|
T Consensus 360 ~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~-~P~~vg~~~~-~~t-----------~~eW 425 (466)
T KOG2532|consen 360 LAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFI-APLLVGIIVT-DNT-----------REEW 425 (466)
T ss_pred HHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHH-HHHheeeEeC-CCC-----------HHHH
Confidence 333333333333 33333333333333 4799999999999999999999 8999999884 211 1359
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 008778 505 RLVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 505 ~~~f~i~~~~~~~~~~~~~~l~ 526 (554)
+.+|++.+++.+++.++..++.
T Consensus 426 ~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 426 RIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHHHhchheeEee
Confidence 9999999999988876555543
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-24 Score=216.83 Aligned_cols=388 Identities=16% Similarity=0.114 Sum_probs=269.1
Q ss_pred HHHhcC--CChhhHHH----HHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 008778 40 LKTLMN--LTQLELNN----LSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC 112 (554)
Q Consensus 40 i~~~~~--~s~~~~~~----~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~ 112 (554)
..++++ .+.++..+ +.+.+.+|.++ +.+.|+++||+|||..+.++.++..++.++..++... +++.++.
T Consensus 45 ~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~----~~~e~li 120 (485)
T KOG0569|consen 45 LIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA----PSFEMLI 120 (485)
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHH
Confidence 345566 55554443 45666777765 7899999999999999999999999998888777544 7899999
Q ss_pred HHHHHHhchhhHhhhhHHHHHHhhccCC-CccchHhhHhhhhhhHHHHHHHHHh-hc-CCChHHHHHHHHHHHHHHHHHH
Q 008778 113 VFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGLSTAIFTDLCSA-LF-ADDPAKFLFMLAIVPFVVCLGA 189 (554)
Q Consensus 113 ~~r~l~Gig~g~~~~~~~~~i~~~fp~~-rg~a~gi~~~~~~lg~~i~~~l~~~-l~-~~~~~~~~~~~~~~~~~~~~~~ 189 (554)
++|++.|+..|.......-++.|.-|++ ||........+..+|..++..++.- ++ ++..|++.+.+..+++++.++.
T Consensus 121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~ 200 (485)
T KOG0569|consen 121 LGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLAL 200 (485)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999975 9999999999999998777555433 44 3467999999999999999999
Q ss_pred HhhccccCCCCCcc-hhhhhhh-hhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcc
Q 008778 190 IFFLRETTPASTVD-EEKEEAK-YFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN 267 (554)
Q Consensus 190 ~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (554)
.++++|+|++...+ ++.++.. ...+ +
T Consensus 201 l~~~PESPk~Ll~~k~~~~~A~~sl~~------------------------------------------------y---- 228 (485)
T KOG0569|consen 201 LPFLPESPKYLLIKKGDEEEARKALKF------------------------------------------------Y---- 228 (485)
T ss_pred HhcCCCCcchHHHHcCCHHHHHHHHHH------------------------------------------------H----
Confidence 99999999875431 1112211 1111 0
Q ss_pred cccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHH-----HHHHHHH
Q 008778 268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFW-----ILFVSFL 342 (554)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 342 (554)
+..++ ++++.++ +. .+.++++..++++.+.+++++||..- .+.+.+.
T Consensus 229 ~G~~~---~~~~~e~------------------~~-------~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~ 280 (485)
T KOG0569|consen 229 RGKED---VEAEIEE------------------ML-------REIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFA 280 (485)
T ss_pred hCCCc---chhHHHH------------------HH-------HHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHH
Confidence 11100 0000000 00 00011111122455678888876432 2233333
Q ss_pred hhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh
Q 008778 343 CGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV 420 (554)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~ 420 (554)
...........+...++++.|+++. .......++.+.+.++++.++.||.|||+.. ..+..++.+..+++..
T Consensus 281 qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLl------l~~~~~~~~~~~~~~~ 354 (485)
T KOG0569|consen 281 QQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLL------LISLSLMAVALLLMSI 354 (485)
T ss_pred HHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH------HHHHHHHHHHHHHHHH
Confidence 4444455566677788888898864 3466677889999999999999999999865 4444444444333221
Q ss_pred -----c-c-Cch---hHHHHHHHHhhhccc-ccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCC
Q 008778 421 -----A-L-PGS---LYIGSIIVGLCYGVR-LAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQAT 489 (554)
Q Consensus 421 -----~-~-~~~---~~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~ 489 (554)
. . ++. ..+..+++.++++.. .++..-+.+|++|++.|+++.+.....+.+..++ -......+.+..|
T Consensus 355 ~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fi-v~~~fp~l~~~~g- 432 (485)
T KOG0569|consen 355 ALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFI-VGFAFPPLQNVIG- 432 (485)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-
Confidence 1 1 221 123444555555554 3466667899999999999999999999999998 4667777777776
Q ss_pred CCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhhhhHH
Q 008778 490 PTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNIYT 534 (554)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~~~~~ 534 (554)
...|+++.+.+++..+..++..+|+|.+..
T Consensus 433 ---------------~~~filF~i~~~~~~i~~~~~lPETkgr~~ 462 (485)
T KOG0569|consen 433 ---------------PYVFILFVIPLAIFLIYLYRYLPETKGRTP 462 (485)
T ss_pred ---------------chhhHHHHHHHHHHHHHHHHhCcccCCCCH
Confidence 267888888888888888888899986554
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-27 Score=234.12 Aligned_cols=327 Identities=19% Similarity=0.246 Sum_probs=232.8
Q ss_pred hhhhhcHH-HHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchH
Q 008778 31 YTFSNYSD-ALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY 108 (554)
Q Consensus 31 ~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~ 108 (554)
.......| .+.+++|.|..+.+++.+...++.. .+++.|++.||+|||+++..+.++.+++.++..++ +++
T Consensus 13 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------~~~ 85 (352)
T PF07690_consen 13 SIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-------SNF 85 (352)
T ss_dssp HHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-------CCH
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-------hhH
Confidence 44556667 7899999999999998777777765 49999999999999999999999999997776666 567
Q ss_pred HHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 008778 109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL 187 (554)
Q Consensus 109 ~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 187 (554)
+.+++.|+++|++.+...+....++.|++|+ +|++++++...+.++|..+++.+.+.+.+..+|++.+++..+..++..
T Consensus 86 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 165 (352)
T PF07690_consen 86 WLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAA 165 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhh
Confidence 7888999999999999999999999999986 799999999999999998888887777766677777766665555544
Q ss_pred HHH-hhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhc
Q 008778 188 GAI-FFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSW 266 (554)
Q Consensus 188 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (554)
+.. .+++++++++..
T Consensus 166 il~~~~~~~~~~~~~~---------------------------------------------------------------- 181 (352)
T PF07690_consen 166 ILFILFLPEPPPPRER---------------------------------------------------------------- 181 (352)
T ss_dssp HHHHCCC---STTTT-----------------------------------------------------------------
T ss_pred hhHhhhhhhccccccc----------------------------------------------------------------
Confidence 321 111111110000
Q ss_pred ccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCc-hHHhhhhhhhHHHHHHHHHhhh
Q 008778 267 NLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDH-TIFEAMWTVDFWILFVSFLCGV 345 (554)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 345 (554)
+++++ ++++ ++ ++.. .+++++++|.+|...+..++..
T Consensus 182 -~~~~~---------------------------~~~~---------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (352)
T PF07690_consen 182 -ESPKE---------------------------SESK---------KP-----KPLKPGFKSLFKNPVLWILLIAFFLFF 219 (352)
T ss_dssp --SSTT---------------------------TT-----------HH-----HCCCH-CTHHHHHHCCHHHHHHHHHHH
T ss_pred -ccccc---------------------------cccc---------cc-----cccccccccccccchhhhhhhhhhHHH
Confidence 00000 0000 00 0111 2467777887775555555444
Q ss_pred cchhhhhccHHHH-HhHhCCC-cchh--hHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHH---
Q 008778 346 GTGLAVMNNMGQI-GLALGYV-DVSI--FVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILM--- 418 (554)
Q Consensus 346 ~~~~~~~~~~~~~-~~~~g~~-~~~~--~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~--- 418 (554)
........+.+.+ .+++|++ .... ..+...+...+++++.|++.||+++|+.. ........+....+
T Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 293 (352)
T PF07690_consen 220 FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRL------LIAILLLILGALGLLLL 293 (352)
T ss_dssp HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHHCCS
T ss_pred HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH------HHHHHHHHHHHHHHHHH
Confidence 4444566777777 4557887 3333 57778888888999999999999876543 22222222222222
Q ss_pred Hhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhh
Q 008778 419 AVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSG 477 (554)
Q Consensus 419 ~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p 477 (554)
... +....+...++.|++.+...+....++.+.+|++++|++.|+.+...++++.+ +|
T Consensus 294 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i-gP 352 (352)
T PF07690_consen 294 PFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGII-GP 352 (352)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-CC
Confidence 222 23355567788999999889999999999999999999999999999999998 76
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-25 Score=223.13 Aligned_cols=342 Identities=16% Similarity=0.120 Sum_probs=229.6
Q ss_pred cHHHHHHhcCCChhhHHHHHHHHHHHH-hhhhhhhhhcccCCchHHHHH-HHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 008778 36 YSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLI-GSLEGLVGYGAQWLVVSRKIQPLSYWQMCV 113 (554)
Q Consensus 36 ~~~~i~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~dr~G~r~~~~~-g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~ 113 (554)
+.+.+++++|.|..+.+++.+.+.+.. +.+++.|++.||+|||+.++. +..+..++.++++++ ++++.+++
T Consensus 20 l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~ 92 (375)
T TIGR00899 20 LSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN-------RNYFLLLV 92 (375)
T ss_pred HHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc-------chHHHHHH
Confidence 333578899999999999776666655 458999999999999887654 555566677777776 78999999
Q ss_pred HHHHHhchhhHhhhhHHHHHHhhccC-CCccc--hHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH
Q 008778 114 FLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPV--SGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAI 190 (554)
Q Consensus 114 ~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a--~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 190 (554)
.|+++|.+.+...+.......++.|+ +|+.+ .++...+.++|..+++++.+.+.+..+|++.++...++.++..+..
T Consensus 93 ~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~ 172 (375)
T TIGR00899 93 LGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLV 172 (375)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99998877777777777777888765 35543 5777777889998888888877776778887777665554443322
Q ss_pred hh-ccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccc
Q 008778 191 FF-LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLN 269 (554)
Q Consensus 191 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (554)
++ +++.|++ +
T Consensus 173 ~~~~~~~~~~---------------------------------------------------------------------~ 183 (375)
T TIGR00899 173 WLFLPSYPRG---------------------------------------------------------------------A 183 (375)
T ss_pred HHhCCCcccC---------------------------------------------------------------------c
Confidence 21 2211100 0
Q ss_pred cCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchh
Q 008778 270 RKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGL 349 (554)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (554)
+++ + ...+.++.+++++++.+....++......
T Consensus 184 ~~~----------------------------------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (375)
T TIGR00899 184 PGA----------------------------------------L-------TRLEVRGLLASRDTRLLFVACTLMWGCNI 216 (375)
T ss_pred ccc----------------------------------------c-------CcchhhhhhcCcchHHHHHHHHHHHHHHH
Confidence 000 0 00011234556666655554443333333
Q ss_pred hhhccHHHHHh-HhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-ccCch
Q 008778 350 AVMNNMGQIGL-ALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-ALPGS 425 (554)
Q Consensus 350 ~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~ 425 (554)
....+.+.+.+ ++|.++.. ...........+++++.|++.||+++|+.. ..+..+..+....... ++.+.
T Consensus 217 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 290 (375)
T TIGR00899 217 LYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLM------LLAALAGVAFYTGLAADNSLWA 290 (375)
T ss_pred HHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666664 46777543 244455566777889999999999988643 2223322233222222 23334
Q ss_pred hHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchH
Q 008778 426 LYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYR 505 (554)
Q Consensus 426 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~ 505 (554)
.++..++.|++.|...+....+..|..| ++++++.|+.+...++|..+ +|.+.|.+.|..+ |+
T Consensus 291 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~-g~~~~g~~~~~~g---------------~~ 353 (375)
T TIGR00899 291 LLMLQLLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWII-AGSVGGILAERWS---------------YH 353 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcc---------------ch
Confidence 4455667778777777777778888886 46689999999999999998 8999999999876 88
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008778 506 LVFVIMAMACIVGFGLDI 523 (554)
Q Consensus 506 ~~f~i~~~~~~~~~~~~~ 523 (554)
..|.+.+++.+++.++..
T Consensus 354 ~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 354 AVYWFAIVMLIVALFCLL 371 (375)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 999998888777766543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-25 Score=219.30 Aligned_cols=327 Identities=22% Similarity=0.249 Sum_probs=260.2
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
+..+...|.+.+++|.+..+.+++.+...++..+ .++.|++.||+|||+.+..+..+..++.+...+. ++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~ 88 (352)
T cd06174 16 GLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-------SSLW 88 (352)
T ss_pred hhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-------ccHH
Confidence 5677788889999999999999987777777754 8999999999999999999999999999998887 7899
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (554)
.+++.|++.|++.+...+.....+.|++|+ +|++++++.....++|..+++.+.+.+.+..+|++.+....+...+..+
T Consensus 89 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (352)
T cd06174 89 LLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLAL 168 (352)
T ss_pred HHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999986 7999999999999999988888877776655566555554433332222
Q ss_pred HHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhccc
Q 008778 189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL 268 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (554)
...+.
T Consensus 169 ~~~~~--------------------------------------------------------------------------- 173 (352)
T cd06174 169 LLLFL--------------------------------------------------------------------------- 173 (352)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 11000
Q ss_pred ccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcch
Q 008778 269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348 (554)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (554)
+ |.++...+..++.....
T Consensus 174 ---------------------------------------------------------~-----~~~~~~~~~~~~~~~~~ 191 (352)
T cd06174 174 ---------------------------------------------------------L-----RLLLLLALAFFLLSFGY 191 (352)
T ss_pred ---------------------------------------------------------H-----HHHHHHHHHHHHHHhHH
Confidence 0 44555555555555555
Q ss_pred hhhhccHHHHHhHh-CCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhc-CCCchhHHHHHHHHHHHHHHHHHhcc-C
Q 008778 349 LAVMNNMGQIGLAL-GYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRA-GTPRPIWNAASQILMAVGYILMAVAL-P 423 (554)
Q Consensus 349 ~~~~~~~~~~~~~~-g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~-~~~~~~~~~~~~~l~~~~~~l~~~~~-~ 423 (554)
.....+.+.+.++. +.++. ....+...++..+++++.|++.||+++|+ .. ..+..+..++.......+ .
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~ 265 (352)
T cd06174 192 YGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLL------LIGLLLAALGLLLLALAPSL 265 (352)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHHHHHHhccH
Confidence 56667777787765 76643 34677888999999999999999999887 44 555555556655554433 3
Q ss_pred chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccc
Q 008778 424 GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHC 503 (554)
Q Consensus 424 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~ 503 (554)
....+..++.|++.+...+....+..|.+|++++++..|+.+....++..+ +|.+.|.+.|..+
T Consensus 266 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~i~g~l~~~~~--------------- 329 (352)
T cd06174 266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGAL-GPLLAGLLLDTGG--------------- 329 (352)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccC---------------
Confidence 456678888999999999999999999999999999999999999999999 8999999998765
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 008778 504 YRLVFVIMAMACIVGFGLDI 523 (554)
Q Consensus 504 ~~~~f~i~~~~~~~~~~~~~ 523 (554)
|+..+.+.+++.+++.+...
T Consensus 330 ~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 330 YGGVFLILAALALLAALLLL 349 (352)
T ss_pred cchHHHHHHHHHHHHHHHhe
Confidence 88999999988888766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=226.24 Aligned_cols=346 Identities=11% Similarity=0.028 Sum_probs=234.1
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
...+.+.+.+++++|+|..+.+++.+...+..+ .+++.|+++||+|||++++++.++..++.++.+++ ++++
T Consensus 25 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-------~~~~ 97 (395)
T PRK10054 25 ATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV-------NNVT 97 (395)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH-------hHHH
Confidence 344555567788999999999997766666554 58999999999999999999999999998888887 7888
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (554)
.+++.|++.|.+.+...+.......|.+|+ +|+++.|+.....++|.++++++.+.+.. .+|+..+....+..++.++
T Consensus 98 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i 176 (395)
T PRK10054 98 LVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLV 176 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHH
Confidence 888889888888777777777888888864 69999999999999999888877776653 4455555554433333322
Q ss_pred HHhh-ccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcc
Q 008778 189 AIFF-LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN 267 (554)
Q Consensus 189 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (554)
...+ +++
T Consensus 177 ~~~~~~~~------------------------------------------------------------------------ 184 (395)
T PRK10054 177 FIQIWVQR------------------------------------------------------------------------ 184 (395)
T ss_pred HHHHHHhc------------------------------------------------------------------------
Confidence 1110 100
Q ss_pred cccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcc
Q 008778 268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT 347 (554)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (554)
.+|++ +++ ++ +..+.++.++||.+|...+..++....
T Consensus 185 ~~~~~----------~~~---------------------------~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (395)
T PRK10054 185 SEKAI----------ATE---------------------------TG------SVWSPSVLLQDKALLWFTCSGFLASFV 221 (395)
T ss_pred ccccc----------ccc---------------------------hh------hhhhhhhhccCceehHHHHHHHHHHHH
Confidence 01100 000 00 001125678888888776665554443
Q ss_pred hhhhhccHHHHHhH---hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-c
Q 008778 348 GLAVMNNMGQIGLA---LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-A 421 (554)
Q Consensus 348 ~~~~~~~~~~~~~~---~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-~ 421 (554)
...+..+.+.+... .+.++. ........+.....++..|++.||.++|+.. ..+..+..++...+.. .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l------~~~~~~~~~~~~~~~~~~ 295 (395)
T PRK10054 222 SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLM------TAGTLCFVIGLVGFIFSG 295 (395)
T ss_pred HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHH------HHHHHHHHHHHHHHHHcc
Confidence 33344455555433 233332 2244455555566677888999998877643 4444555555544433 2
Q ss_pred cC-chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCccccc
Q 008778 422 LP-GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVG 500 (554)
Q Consensus 422 ~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~ 500 (554)
++ +...+...+++++.+...+...+.+.+..|++.+++.+|..+ ...+|..+ ||.+.|.++|..+
T Consensus 296 ~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~-Gp~~~G~l~~~~g------------ 361 (395)
T PRK10054 296 NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAI-NPLVSGVILTTLP------------ 361 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHH-HHHHHHHHHHHcC------------
Confidence 22 234456677888877767777788899999999999988655 56688888 9999999999986
Q ss_pred ccchHHHHHHHHHHHHHHHHHH
Q 008778 501 AHCYRLVFVIMAMACIVGFGLD 522 (554)
Q Consensus 501 ~~~~~~~f~i~~~~~~~~~~~~ 522 (554)
+...|++.+.+..++.++.
T Consensus 362 ---~~~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 362 ---PWSLFVILALAIVAAWLLM 380 (395)
T ss_pred ---hhhHHHHHHHHHHHHHHHH
Confidence 6777877766655554443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=218.68 Aligned_cols=349 Identities=13% Similarity=0.015 Sum_probs=223.6
Q ss_pred hhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 008778 34 SNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC 112 (554)
Q Consensus 34 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~ 112 (554)
....+.+.++++.+..+.+|+.+.+.+.+.+ +|+.|++.||+|||++++.+.+++.++++++.++ +++ +
T Consensus 23 ~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~-------~~~---~ 92 (393)
T PRK11195 23 LFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG-------IHP---L 92 (393)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-------HHH---H
Confidence 3444567889999999999988787777754 9999999999999999999999999998887665 443 6
Q ss_pred HHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHh
Q 008778 113 VFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF 191 (554)
Q Consensus 113 ~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (554)
+.|+++|++.+...|+..+++.|++|+ +|++++|+......+|.++++++++.+.+.. |+..+........+..+...
T Consensus 93 ~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~~~~~ 171 (393)
T PRK11195 93 LAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAALFNL 171 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999985 6999999999998888888877777665532 43333333322222222222
Q ss_pred hccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccC
Q 008778 192 FLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRK 271 (554)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (554)
.+++.+.+. ++
T Consensus 172 ~l~~~~~~~---------------------------------------------------------------------~~ 182 (393)
T PRK11195 172 FIPRLGARR---------------------------------------------------------------------PG 182 (393)
T ss_pred cCCCCcccc---------------------------------------------------------------------cc
Confidence 222111000 00
Q ss_pred CCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchhhh
Q 008778 272 RTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAV 351 (554)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (554)
+ + .++.....+ . ....++++++|.+........+........
T Consensus 183 ~------------~--------------~~~~~~~~~----~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (393)
T PRK11195 183 Q------------S--------------WNPIALLRD----F--------FHACRVLWRDKLGRFSLAGTTLFWGAGATL 224 (393)
T ss_pred c------------C--------------CCHHHHHHH----H--------HHHHHHHHhCchhHHHHHHHHHHHHHHHHH
Confidence 0 0 000000000 0 001245667776654433332222223333
Q ss_pred hccHHHHHhH-hCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccC-chhH
Q 008778 352 MNNMGQIGLA-LGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALP-GSLY 427 (554)
Q Consensus 352 ~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~ 427 (554)
....+.+.++ +|+++.. ...+..+++..+|.+..+++.||.++|+.. ..+. ++++....+...++ +...
T Consensus 225 ~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~------~~g~-~~~~~~~~~~~~~~~~~~~ 297 (393)
T PRK11195 225 RFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVL------PAGI-LMGLVVLLMALQHSLLPAY 297 (393)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchH------HHHH-HHHHHHHHHHHHhHHHHHH
Confidence 3445555554 5776543 466777888899999999988887765433 2332 22333222332222 2344
Q ss_pred HHHHHHHhhhcccccchHHHHHHhhCCcc-hhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHH
Q 008778 428 IGSIIVGLCYGVRLAVTVPTASELFGLKY-YGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRL 506 (554)
Q Consensus 428 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~ 506 (554)
+..++.|++.+...+...+...+..+++. +|++.++.++.++++..+ +..+.+.+ +..+ -+.
T Consensus 298 ~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~-~~~~~~~~-~~~~---------------~~~ 360 (393)
T PRK11195 298 PLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLL-MLGLYSLL-VKLG---------------VPV 360 (393)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHH-HHHHHHHH-HHcC---------------CCH
Confidence 55667888877777767777788765544 699999999999999998 78787754 5655 455
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008778 507 VFVIMAMACIVGFGLDIL 524 (554)
Q Consensus 507 ~f~i~~~~~~~~~~~~~~ 524 (554)
.+.+..+..++++.+.+.
T Consensus 361 ~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK11195 361 VAVIVGFGLLVALAMALL 378 (393)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666555444455444433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=226.50 Aligned_cols=366 Identities=15% Similarity=0.106 Sum_probs=246.2
Q ss_pred HHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhhhhhhhhhcccC-----CchHH-HHHHHHHHHHHHHHH
Q 008778 23 VQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRI-----PAPII-LLIGSLEGLVGYGAQ 95 (554)
Q Consensus 23 ~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~dr~-----G~r~~-~~~g~~l~~~~~~~~ 95 (554)
+.+..|.. +..+...|...++.|.|.++++.++... ....+.+++|++.||+ |||+. +..+.+...++...+
T Consensus 20 l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~-~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~ 98 (491)
T PRK11010 20 LGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVG-QAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAM 98 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHH
Confidence 33344544 5556667888889999999999974333 3335689999999999 99885 667777777777776
Q ss_pred HHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcC-CChHH
Q 008778 96 WLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA-DDPAK 173 (554)
Q Consensus 96 ~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~-~~~~~ 173 (554)
++.... ++++.+.+.+++.|++.+...+....++.||+| ++|+++.++...+..+|.++++.+...+.+ ..+|+
T Consensus 99 a~~~~~----~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr 174 (491)
T PRK11010 99 GFLEPG----TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQ 174 (491)
T ss_pred HHcCCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 665211 478888999999999999998888899999997 579999999999999999888888777776 35788
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhh
Q 008778 174 FLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLAS 253 (554)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (554)
..+++.....++..+..++.+++
T Consensus 175 ~~f~i~a~l~ll~~l~~~~~~e~--------------------------------------------------------- 197 (491)
T PRK11010 175 GMYWLMAALLIPCIIATLLAPEP--------------------------------------------------------- 197 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC---------------------------------------------------------
Confidence 87777665554443332222211
Q ss_pred cccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhh
Q 008778 254 PVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVD 333 (554)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (554)
++ . ++++ + + .+ .....+.++.++++.
T Consensus 198 -----------------~~-~-------~~~~--------------~-~----------~~----~~~~~~l~~~~~~~~ 223 (491)
T PRK11010 198 -----------------TD-T-------IPVP--------------K-T----------LE----QAVVAPLRDFFGRNN 223 (491)
T ss_pred -----------------cc-c-------cccc--------------c-c----------hh----hhHHHHHHHHHcCcC
Confidence 11 0 0000 0 0 00 000113456777777
Q ss_pred HHHHHHHHHhhhcchhhhhccHHHHH-hHhCCCcchh--hH-HHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHH
Q 008778 334 FWILFVSFLCGVGTGLAVMNNMGQIG-LALGYVDVSI--FV-SLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQI 409 (554)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~--~~-~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 409 (554)
.|...+..++..........+.++++ ++.|+++... .. ....++.++|.+++|+++||+++|+.. ..+.+
T Consensus 224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l------~i~~~ 297 (491)
T PRK11010 224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRAL------MIFGI 297 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHH
Confidence 77655444433333333344566665 4578876543 33 344578899999999999999987643 22222
Q ss_pred HHHHHH---HHHHhcc-Cc-hhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHH
Q 008778 410 LMAVGY---ILMAVAL-PG-SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLY 484 (554)
Q Consensus 410 l~~~~~---~l~~~~~-~~-~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~ 484 (554)
+.++.. ..+.... +. .+....++..++.|...+...++..+..+++..++.+|+.+...+++..+ ++.+.|.+.
T Consensus 298 l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~-~~~~~G~l~ 376 (491)
T PRK11010 298 LQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVY-VGPVAGWFV 376 (491)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 222222 2222222 21 22334445444555555666788889999999999999999999999988 677999999
Q ss_pred hccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhH
Q 008778 485 DAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~ 526 (554)
|..| |+..|.+.+++.+.++++...++
T Consensus 377 ~~~G---------------~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 377 EAHG---------------WPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHhC---------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 9886 89999999988888877766553
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=220.76 Aligned_cols=334 Identities=14% Similarity=0.016 Sum_probs=220.4
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
..+....|++.++++.+.++.++..+.+.++.. .+++.|+++||+|||++++.+.+++.++.+++.++ ++++
T Consensus 33 ~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-------~~~~ 105 (413)
T PRK15403 33 DLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-------TSMT 105 (413)
T ss_pred HhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-------CCHH
Confidence 556667788999999999999997666667765 48999999999999999999999999999999888 8999
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (554)
.++++|+++|++.+...+....++.|++|+ +|++++++...+..+|..+++.+++.+.+..+|++.|....+..++..+
T Consensus 106 ~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~ 185 (413)
T PRK15403 106 QFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFV 185 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 999999999999987777777888999985 5899999999999999988777776666666788877766655444433
Q ss_pred HHhh-ccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcc
Q 008778 189 AIFF-LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN 267 (554)
Q Consensus 189 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (554)
..++ +++.+
T Consensus 186 ~~~~~lp~~~---------------------------------------------------------------------- 195 (413)
T PRK15403 186 GLLLAMPETV---------------------------------------------------------------------- 195 (413)
T ss_pred HHHHhCCCCc----------------------------------------------------------------------
Confidence 2211 11100
Q ss_pred cccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcc
Q 008778 268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT 347 (554)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (554)
+++ +++ .+.+ ....+++++++||.+|...+...+....
T Consensus 196 --~~~----------~~~--------------~~~~----------------~~~~~~~~ll~~~~~~~~~l~~~~~~~~ 233 (413)
T PRK15403 196 --KRG----------AVP--------------FSAK----------------SVLRDFRNVFRNRLFLTGAATLSLSYIP 233 (413)
T ss_pred --ccc----------CCC--------------CChH----------------HHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 000 000 0000 0012346888999999888877666555
Q ss_pred hhhhhccHHHHHhHh-CCCcchh--hHHHHHHHHhHhhHHhhcchhhHhhhcCCCch-hHHHHHHHHHHHHHHHHHhccC
Q 008778 348 GLAVMNNMGQIGLAL-GYVDVSI--FVSLTSIWGFFGRIISGSVSEYFIKRAGTPRP-IWNAASQILMAVGYILMAVALP 423 (554)
Q Consensus 348 ~~~~~~~~~~~~~~~-g~~~~~~--~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~-~~~~~~~~l~~~~~~l~~~~~~ 423 (554)
...+....|.+.++. |+++... .......+..++..+.+.+.+|..+++...+. .....+..++.++.. ...+.
T Consensus 234 ~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~--~~~~~ 311 (413)
T PRK15403 234 MMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNL--LWPHV 311 (413)
T ss_pred HHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH--Hcccc
Confidence 555666678888764 7775433 33344556666666666554332222211000 001111111111111 11222
Q ss_pred c-hhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhcc
Q 008778 424 G-SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQ 487 (554)
Q Consensus 424 ~-~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~ 487 (554)
. ..++..+++++|.+...+......-.. .+..+|++.++.+..+..+..+ ++...+++.+..
T Consensus 312 ~~~~~~~~~l~~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~-~~~~~g~~~~~~ 374 (413)
T PRK15403 312 WLWSVLGTSLYAFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAV-SVEIGRWLWFNG 374 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHcC
Confidence 2 235566777777777666555333211 2334799999999999888888 888889887774
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=203.96 Aligned_cols=246 Identities=50% Similarity=0.907 Sum_probs=218.0
Q ss_pred hhHHHHHHHHHHHhhccchhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhhhhhhhhhcccCCchHHHHHHHHHHHHHH
Q 008778 13 KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGY 92 (554)
Q Consensus 13 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~g~~l~~~~~ 92 (554)
||..++++++++.+.|..|.++.|.|++++.+|+|++|.+.++++..+|..+++++|.+.||+|+|.++.+|.+...+|+
T Consensus 1 rW~~l~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY 80 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGY 80 (250)
T ss_pred ChhhHHHHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccCCCccchHhhHhhhhhhHHHHHHHHHhhcCCChH
Q 008778 93 GAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPA 172 (554)
Q Consensus 93 ~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~ 172 (554)
.+.++++.+.+++.++|+++++.++.|.|.+....++..+..+.||++||++.|+..+..+++++++..+...++.++..
T Consensus 81 ~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~ 160 (250)
T PF06813_consen 81 GLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPS 160 (250)
T ss_pred HHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChH
Confidence 99999999888767899999999999999999888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcch--h-hhHHHHHHHH
Q 008778 173 KFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSET--L-ALIFSGILII 249 (554)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~ 249 (554)
.+++++++.+.+++++..+++|+.|+....++++++++++......++.++.|++...+..+..+. . .-....++++
T Consensus 161 ~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~l 240 (250)
T PF06813_consen 161 SFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFLFFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLL 240 (250)
T ss_pred HHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999988765444456677888888888889999999988877655444 2 2233355556
Q ss_pred Hhhhccccc
Q 008778 250 LLASPVAIP 258 (554)
Q Consensus 250 ~~~~~~~~~ 258 (554)
++..|++++
T Consensus 241 lL~~Pl~i~ 249 (250)
T PF06813_consen 241 LLLLPLAIP 249 (250)
T ss_pred HHHhhhhcc
Confidence 666666554
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=219.87 Aligned_cols=324 Identities=17% Similarity=0.120 Sum_probs=209.1
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
..+....|.+.+++|.|.++.+++.+.+.++..+ +++.|++.||+|||+.++.+.+++.++..++.++ ++++
T Consensus 20 ~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~-------~~~~ 92 (392)
T PRK10473 20 DMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA-------ETSS 92 (392)
T ss_pred HHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-------CcHH
Confidence 4445678999999999999999987777777765 8999999999999999999999999999998877 7889
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (554)
.+++.|+++|++.+..++.....+.+++| ++|+++.++......++..+++.+...+....+|+..+.+..+...+..+
T Consensus 93 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~ 172 (392)
T PRK10473 93 LFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLL 172 (392)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHH
Confidence 99999999999999998889999999997 57999999999888888877766666555556677666555443333222
Q ss_pred H-HhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcc
Q 008778 189 A-IFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN 267 (554)
Q Consensus 189 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (554)
. .+.+++.
T Consensus 173 ~~~~~~~~~----------------------------------------------------------------------- 181 (392)
T PRK10473 173 LSLFILKET----------------------------------------------------------------------- 181 (392)
T ss_pred HHHHHcCCC-----------------------------------------------------------------------
Confidence 2 1111111
Q ss_pred cccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcc
Q 008778 268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT 347 (554)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (554)
++++ ++ ++ . ......++.++++.++...+...+....
T Consensus 182 -~~~~-----------~~-------------~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (392)
T PRK10473 182 -RPAR-----------AP-------------AA-S-----------------SKPRENSESLLNRFFLSRLVITTLSVTV 218 (392)
T ss_pred -CCcc-----------cC-------------Cc-c-----------------chHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 0000 00 00 0 0011224567777777654443333322
Q ss_pred hhhhhccHHHHHh-HhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cC
Q 008778 348 GLAVMNNMGQIGL-ALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LP 423 (554)
Q Consensus 348 ~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~ 423 (554)
...+..+.+.+.+ ++|+++.. ...+..++...+++++.|++.||+++|+.. ..+..+..++.+.+... ..
T Consensus 219 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~------~~~~~~~~~~~~~~~~~~~~ 292 (392)
T PRK10473 219 ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLM------LTSQVLFLAAGITLALSPSH 292 (392)
T ss_pred HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 2233344455554 46887543 356677888999999999999999988754 44444444444433322 22
Q ss_pred chhHHHHHHHHhhhcccccchHHHHHHhhCCcc-hhhHHHHHHhhhhhhHHHhhhhHHHHHHhccC
Q 008778 424 GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKY-YGLIYNILILNLPLGSFLFSGLLAGYLYDAQA 488 (554)
Q Consensus 424 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~ 488 (554)
........+.+.+.+...+. ....+..|.++ .|.+.++ ..++..+ ++.+.+.+.+..+
T Consensus 293 ~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~g~~~~~----~~~~~~~-g~~~~~~l~~~~g 351 (392)
T PRK10473 293 AVSLFGITLICAGFSVGFGV--AMSQALGPFSLRAGVASST----LGIAQVC-GSSLWIWLAAVLG 351 (392)
T ss_pred HHHHHHHHHHHHHHHHHhHH--HHHHHhccCcccccHHHHH----HHHHHHH-HHHHHHHHHHHhc
Confidence 22333334444444433332 23334444333 3444443 3455555 5666677777665
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-24 Score=216.79 Aligned_cols=342 Identities=12% Similarity=-0.006 Sum_probs=241.3
Q ss_pred hhcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHH----HHHHHHHHHHHHHHHHHhhccCCCchH
Q 008778 34 SNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIIL----LIGSLEGLVGYGAQWLVVSRKIQPLSY 108 (554)
Q Consensus 34 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~----~~g~~l~~~~~~~~~~a~~~~~~~~s~ 108 (554)
-.+.|.+.+++|+|.+|++++.+...+... .+++.|.+.||+|||... ..+..++.+ ..+..+ +++
T Consensus 24 ~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~-------~~~ 94 (382)
T TIGR00902 24 LPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGA-------HNA 94 (382)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhh-------hhH
Confidence 345678889999999999997666666664 599999999999985432 233222222 122234 689
Q ss_pred HHHHHHHHHHhchhhHhhhhHHHHHHhhccCCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 008778 109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 109 ~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (554)
+.+++.|+++|.+.+...+...++.. +++++|+++.|....+.++|.++++++.+.+.+..+|+..+........+.++
T Consensus 95 ~~l~~~~~l~~~~~~~~~p~~~al~~-~~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~ 173 (382)
T TIGR00902 95 WLLFIAIGLFALFFSAGMPIGDALAN-TWQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI 173 (382)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHH-HHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence 99999999999888887777666654 45678999999999999999999888888887777777765543322111111
Q ss_pred HHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhccc
Q 008778 189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL 268 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (554)
.+.++ +
T Consensus 174 -~~~~~-------------------------------------------------------------------------~ 179 (382)
T TIGR00902 174 -GFLIK-------------------------------------------------------------------------P 179 (382)
T ss_pred -HHHcC-------------------------------------------------------------------------C
Confidence 11110 1
Q ss_pred ccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcch
Q 008778 269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348 (554)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (554)
++++ + ++++ + + +.....+.++++|+|++|.+.+..++.....
T Consensus 180 ~~~~-~-------~~~~--------------~-~---------------~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~ 221 (382)
T TIGR00902 180 TIPP-K-------DAIP--------------E-D---------------ESQGDSAFIALLKNPMNLRFLAAVCLIQGAH 221 (382)
T ss_pred CCCC-C-------cccc--------------c-c---------------ccccchhHHHHHcChHHHHHHHHHHHHHHHH
Confidence 1000 0 0000 0 0 0001223578899999999888777766666
Q ss_pred hhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCch
Q 008778 349 LAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGS 425 (554)
Q Consensus 349 ~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~ 425 (554)
..+..+.+.+.++.|.++.. ...+...+..+++.+..|++.||++.|+.+ ..+.++..+.+..+... +.+.
T Consensus 222 ~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l------~~~~~~~~~~~~~~~~~~~~~~ 295 (382)
T TIGR00902 222 AAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLL------LISAIACVGRWAIIGAIEAFPL 295 (382)
T ss_pred HHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHH------HHHHHHHHHHHHHHHhHhhHHH
Confidence 67777888888888888643 355667788888888899999999888754 56666666666665543 3445
Q ss_pred hHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHH-hhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccch
Q 008778 426 LYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILI-LNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCY 504 (554)
Q Consensus 426 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~ 504 (554)
++...++.|+++|...+....++.+. |++++++.+++.+ ...++|..+ +|.+.|+++|..+ +
T Consensus 296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~-g~~~~G~l~~~~g---------------~ 358 (382)
T TIGR00902 296 IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAI-FTAFAGFIYPTLG---------------A 358 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcc---------------H
Confidence 66778899999999888888888888 8889999999986 467888998 8999999999985 4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008778 505 RLVFVIMAMACIVGFGL 521 (554)
Q Consensus 505 ~~~f~i~~~~~~~~~~~ 521 (554)
..|.+++++.++++++
T Consensus 359 -~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 359 -GTFVFMAIIAAAAFFL 374 (382)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 6688888777766543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=220.82 Aligned_cols=346 Identities=14% Similarity=0.004 Sum_probs=222.4
Q ss_pred hhhhhcHHHHHHhcC--CChhhHHHHHHH--HHH---HH-hhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhcc
Q 008778 31 YTFSNYSDALKTLMN--LTQLELNNLSVV--KDI---GK-AFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRK 102 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~--~s~~~~~~~~~~--~~~---~~-~~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~ 102 (554)
+.++...+.+.+++. .++++.+...+. +.. .. +.+++.|++.||+|||+++..+.++..++.++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---- 85 (394)
T TIGR00883 10 YLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL---- 85 (394)
T ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC----
Confidence 556667777776654 445555553222 122 21 237899999999999999999999999999998887
Q ss_pred CCCchHH--------HHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhc------
Q 008778 103 IQPLSYW--------QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF------ 167 (554)
Q Consensus 103 ~~~~s~~--------~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~------ 167 (554)
++++ .+++.|+++|++.+...+....++.|++| ++|+++.++...+..+|..+++.+...+.
T Consensus 86 ---~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 86 ---PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred ---CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 5554 47788999999999999999999999997 57999999999998888877766544331
Q ss_pred --CCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHH
Q 008778 168 --ADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSG 245 (554)
Q Consensus 168 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (554)
...+|++.+....+..++......
T Consensus 163 ~~~~~~w~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 188 (394)
T TIGR00883 163 ALLEWGWRIPFLVSAVLVLIGLYLRR------------------------------------------------------ 188 (394)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHH------------------------------------------------------
Confidence 122344444433322222111100
Q ss_pred HHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchH
Q 008778 246 ILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTI 325 (554)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (554)
..|++ .. + ++++ ++ +++...+.
T Consensus 189 ----------------------~~~~~-~~-~----~~~~---------------------------~~---~~~~~~~~ 210 (394)
T TIGR00883 189 ----------------------NLEET-PV-F----EKAQ---------------------------EK---HKKKRGPI 210 (394)
T ss_pred ----------------------hcCCC-hh-H----HHHH---------------------------hc---cccccCCH
Confidence 01111 00 0 0000 00 00012234
Q ss_pred Hhhhhhhh--HHHHHHHHHhhhcchhhhhccHHHHHh-HhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCc
Q 008778 326 FEAMWTVD--FWILFVSFLCGVGTGLAVMNNMGQIGL-ALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPR 400 (554)
Q Consensus 326 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~ 400 (554)
++.++++. ++......++..........+.+.+.+ +.|.++.. .......+.+.+++++.|+++||+++|+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-- 288 (394)
T TIGR00883 211 RETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVL-- 288 (394)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH--
Confidence 56666655 665555555544444555667788874 46776543 356677888999999999999999988643
Q ss_pred hhHHHHHHHHH-HHHHH-HH-Hh-cc-CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHH-hhhhhhHHH
Q 008778 401 PIWNAASQILM-AVGYI-LM-AV-AL-PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILI-LNLPLGSFL 474 (554)
Q Consensus 401 ~~~~~~~~~l~-~~~~~-l~-~~-~~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~l 474 (554)
.....+. ..... +. .. .+ ........++.|++.+...+...+.+.|.+|+++++++.|+.. ....+++.+
T Consensus 289 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ 364 (394)
T TIGR00883 289 ----IIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGF 364 (394)
T ss_pred ----HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhH
Confidence 2111111 11211 11 11 12 2234455667788888888888999999999999999999854 445677777
Q ss_pred hhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHH
Q 008778 475 FSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACI 516 (554)
Q Consensus 475 ~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~ 516 (554)
+|.+.|.+.|..+. |+..++...++.+
T Consensus 365 -~p~~~g~l~~~~g~--------------~~~~~~~~~~~~l 391 (394)
T TIGR00883 365 -APYIAAALVAMTGD--------------WYAIGYYLAALAL 391 (394)
T ss_pred -HHHHHHHHHHHcCc--------------chhHHHHHHHHHH
Confidence 89999999999864 6666655554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=219.74 Aligned_cols=356 Identities=12% Similarity=0.010 Sum_probs=231.8
Q ss_pred hhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCc-hHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPA-PIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 32 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~-r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
.++...+.+++++|++.+|++++.....++..+ +++.|+++||+|+ |+++.++.++.++++.+..+. ++++
T Consensus 21 ~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~-------~~~~ 93 (418)
T TIGR00889 21 WLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV-------TTPA 93 (418)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh-------cCHH
Confidence 346666778889999999999987777777754 9999999999964 778888888888888887776 7899
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHH-----------HhhccCCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTC-----------IRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFML 178 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i-----------~~~fp~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~ 178 (554)
.+++.|++.|++.+...+...... .+.++ |.+..|. +|.++++.+.+.+.....|..++..
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~--~~r~~G~------lG~~ig~~l~g~l~~~~~~~~f~~~ 165 (418)
T TIGR00889 94 GMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP--PIRVMGT------IGFIAAMWAVSLLDIELSNIQLYIT 165 (418)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC--Ceeeehh------HHHHHHHHHHHHhcccchhHHHHHH
Confidence 999999999987766655444332 22233 4445553 3444444444433222223333322
Q ss_pred HHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhccccc
Q 008778 179 AIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIP 258 (554)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (554)
+++ .++.++..+.+++.
T Consensus 166 ~~~-~~~~~~~~~~~~e~-------------------------------------------------------------- 182 (418)
T TIGR00889 166 AGS-SALLGVFALTLPDI-------------------------------------------------------------- 182 (418)
T ss_pred HHH-HHHHHHHHhcCCCC--------------------------------------------------------------
Confidence 222 22222212211111
Q ss_pred chhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHH
Q 008778 259 VYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILF 338 (554)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (554)
|++ ++++ +.+ .++ ....+.++++|+|.++.+.
T Consensus 183 -----------~~~---------~~~~--------------~~~----------~~~----~~~~~~~~~~k~~~~~~~~ 214 (418)
T TIGR00889 183 -----------PVA---------KSTA--------------KMS----------IKV----MLGLDAFILFKNKRMAIFF 214 (418)
T ss_pred -----------CCC---------cccc--------------ccC----------HHH----HhhhhHHHHhcCCCeeeHH
Confidence 000 0000 000 000 0011235678899888777
Q ss_pred HHHHhhhcchhhhhccHHHHHhHhCCCc----------chhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHH
Q 008778 339 VSFLCGVGTGLAVMNNMGQIGLALGYVD----------VSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQ 408 (554)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~----------~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 408 (554)
+..++..........+.+.+.++.|.++ .....+...+..+++.+..|+++||+++|+.+ ..+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l------~~~~ 288 (418)
T TIGR00889 215 FFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVM------LLSL 288 (418)
T ss_pred HHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHHH
Confidence 7666544433344455677777776542 23466777888899999999999999998765 5555
Q ss_pred HHHHHHHHHHHhcc--C---chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHH-hhhhhhHHHhhhhHHHH
Q 008778 409 ILMAVGYILMAVAL--P---GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILI-LNLPLGSFLFSGLLAGY 482 (554)
Q Consensus 409 ~l~~~~~~l~~~~~--~---~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~l~~p~i~g~ 482 (554)
++.++.+.++.... . ..+++..++.|++.+...+....++.|.+|++++++++|+.+ ....+|+.+ ||.+.|.
T Consensus 289 ~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i-Gp~l~G~ 367 (418)
T TIGR00889 289 VAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL-GYILSGV 367 (418)
T ss_pred HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH-HHHHHHH
Confidence 55555554443321 1 234456777888888777777888999999999999999997 567899998 9999999
Q ss_pred HHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhh
Q 008778 483 LYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKT 529 (554)
Q Consensus 483 i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~ 529 (554)
+.|..+.... .+|+..|.+.+++.+++.++.+++.+++
T Consensus 368 l~~~~g~~~~---------~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 368 MVEKMFAYGT---------FDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHhccccC---------CchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9998752110 1389999999988888877777766543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=218.21 Aligned_cols=325 Identities=15% Similarity=0.157 Sum_probs=210.8
Q ss_pred hhhhhcHHH-HHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCc-h
Q 008778 31 YTFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPL-S 107 (554)
Q Consensus 31 ~~~~~~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~-s 107 (554)
+.++.+.|+ +++++|+|..+.+++.+...++..+ +++.|++.||+|||++++++.++..++.++++++ + +
T Consensus 18 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~-------~~~ 90 (366)
T TIGR00886 18 FAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA-------VQS 90 (366)
T ss_pred HHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-------hhh
Confidence 667888885 8999999999999988777777765 8999999999999999999999999999999888 7 8
Q ss_pred HHHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcC----------CChHHHHH
Q 008778 108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA----------DDPAKFLF 176 (554)
Q Consensus 108 ~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~----------~~~~~~~~ 176 (554)
++.+++.|+++|++.+. +......+.+++| ++|++++++......+|..+++.+...+.. ..+|++.+
T Consensus 91 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~ 169 (366)
T TIGR00886 91 YSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAF 169 (366)
T ss_pred HHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchh
Confidence 99999999999998665 4567788999997 469999999886666666555444433221 01233332
Q ss_pred -HH-HHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhc
Q 008778 177 -ML-AIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASP 254 (554)
Q Consensus 177 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (554)
+. +.+..+..++...+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 189 (366)
T TIGR00886 170 VIVPAGILLLPALLIFFVGA------------------------------------------------------------ 189 (366)
T ss_pred HHHHHHHHHHHHHHHHHhcc------------------------------------------------------------
Confidence 11 1111111111111111
Q ss_pred ccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhH
Q 008778 255 VAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDF 334 (554)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (554)
++|++ ..++ ++.+. +++.. + .+.......++.+++|++
T Consensus 190 -------------~~~~~-~~~~---~~~~~-------------~~~~~----------~--~~~~~~~~~~~~~~~~~~ 227 (366)
T TIGR00886 190 -------------DTPPG-KPAT---GKLSF-------------KGARW----------S--VGTGALGDQLKVFRDRHT 227 (366)
T ss_pred -------------cCCcc-cccc---hhccc-------------ccccc----------c--ccchhHHHHHHHHhccch
Confidence 11111 0000 00000 00000 0 000001134678889999
Q ss_pred HHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHH
Q 008778 335 WILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILM 411 (554)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~ 411 (554)
|...+..++..........+.+.+.++ +|+++. ....+...+.+.+++++.|+++||+++|+.. ..+..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~------~~~~~~~ 301 (366)
T TIGR00886 228 WILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKL------LMSFLGV 301 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhH------HHHHHHH
Confidence 988877776666566666778888865 587753 3356677888999999999999999987654 2222233
Q ss_pred HHHHHHHH--hcc--C-chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhH
Q 008778 412 AVGYILMA--VAL--P-GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGS 472 (554)
Q Consensus 412 ~~~~~l~~--~~~--~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 472 (554)
+.+..++. ... . ....+...+.+++.|...+...+.+++.++ +++|+++|+.+..+++|+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 302 AMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG 366 (366)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence 33322222 221 2 222334445555666666666677788875 799999999998887763
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-24 Score=219.12 Aligned_cols=361 Identities=16% Similarity=0.109 Sum_probs=217.2
Q ss_pred hhhhcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 008778 32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ 110 (554)
Q Consensus 32 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~ 110 (554)
..+.+...+++++|+|..+.+++.+...+... .+++.|++.||+|||++++++..+.+++......... ...+.
T Consensus 29 ~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 103 (420)
T PRK09528 29 WFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVF-----APLLQ 103 (420)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 34555556777899999999997777777775 5999999999999999998877666555432211100 01111
Q ss_pred --HHHHHHHHhchhhHhhhhHHHHHHhh---ccCCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 008778 111 --MCVFLCMGGNSTTWMNTAVLVTCIRN---FRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVV 185 (554)
Q Consensus 111 --l~~~r~l~Gig~g~~~~~~~~~i~~~---fp~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~ 185 (554)
.....++.++..+.........+.+| ++++++++.|......++|..+++++.+.+.+. .|+..++...+..++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~f~~~~~~~~~ 182 (420)
T PRK09528 104 YNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNI-NPQINFWLGSGSALI 182 (420)
T ss_pred HHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhc-CchHhHHHHHHHHHH
Confidence 11122222333333222222223333 445688899998888889998888887766543 455555554444433
Q ss_pred HHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhh
Q 008778 186 CLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKS 265 (554)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (554)
.++..++.+++++
T Consensus 183 ~~~~~~~~~~~~~------------------------------------------------------------------- 195 (420)
T PRK09528 183 LLVLLFFAKPDAP------------------------------------------------------------------- 195 (420)
T ss_pred HHHHHhccccccc-------------------------------------------------------------------
Confidence 3332222111100
Q ss_pred cccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhh
Q 008778 266 WNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGV 345 (554)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (554)
++ ++. ++++ +++ ++..+..+.++.+|||.+|.+.+..+...
T Consensus 196 -----~~-----~~~-~~~~---------------------------~~~-~~~~~~~~~~~~l~~~~~~~l~l~~~~~~ 236 (420)
T PRK09528 196 -----ST-----AKV-ANAL---------------------------GAN-ASAVSLKDALALLKLPKFWFLVLYVIGVA 236 (420)
T ss_pred -----ch-----hhh-ccch---------------------------hcc-cccccHHHHHHHccCCCeEeehHHHHHHH
Confidence 00 000 0000 000 00001123456788888876655443333
Q ss_pred cchhhhhccHHHHHhHh----CCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHH
Q 008778 346 GTGLAVMNNMGQIGLAL----GYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMA 419 (554)
Q Consensus 346 ~~~~~~~~~~~~~~~~~----g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~ 419 (554)
........+.+.+..+. +.+.. +...+...+...++.+..|++.||+++|+.. ..+.++.+++..+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~------~~~~~l~~~~~~l~~ 310 (420)
T PRK09528 237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNAL------LLAGTIMAVRIIGSG 310 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh------HHHHHHHHHHHHHHH
Confidence 33333333456555442 33322 2356667788889999999999999998754 444455555555544
Q ss_pred h-ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHH-HHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcc
Q 008778 420 V-ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNI-LILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNT 497 (554)
Q Consensus 420 ~-~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~ 497 (554)
. ++++.++....+.+++.+...+....++.+.+|++.+++.++. .+....+|+++ +|.+.|++.|..|
T Consensus 311 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~i-g~~~~G~l~~~~G--------- 380 (420)
T PRK09528 311 FATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVF-LSTLAGNLYDSIG--------- 380 (420)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHH-HHHHHHHHHHhhC---------
Confidence 3 3444445556666766666555666778899999998888766 56778899998 8999999999886
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhH
Q 008778 498 CVGAHCYRLVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 498 ~~~~~~~~~~f~i~~~~~~~~~~~~~~l~ 526 (554)
|+..|.+.+++.++..++.++..
T Consensus 381 ------~~~~f~~~~~~~~i~~~~~~~~~ 403 (420)
T PRK09528 381 ------FQGTYLILGGIVLLFTLISVFTL 403 (420)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHh
Confidence 89999998888776665554443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=213.97 Aligned_cols=323 Identities=11% Similarity=0.042 Sum_probs=214.1
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
..+....|++.+++|+|.++.+++.+...++..+ .++.|++.||+|||+++..+.++..++.+++.++ ++++
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-------~~~~ 80 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-------QTID 80 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-------ccHH
Confidence 3455677899999999999999987777777755 8999999999999999999999999999998887 7899
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (554)
.+++.|+++|++.+...+.....+.+++|+ +|++++++...+..+|..+++++.+.+.+..+|++.+.......++..+
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (377)
T PRK11102 81 QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAA 160 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 999999999999999988889999999975 6999999999999999988877777666655666665554443333222
Q ss_pred HH-hhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcc
Q 008778 189 AI-FFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN 267 (554)
Q Consensus 189 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (554)
.. +.+++.+
T Consensus 161 ~~~~~~~~~~---------------------------------------------------------------------- 170 (377)
T PRK11102 161 LVFFFIPETL---------------------------------------------------------------------- 170 (377)
T ss_pred HHHHhCCccC----------------------------------------------------------------------
Confidence 11 1111110
Q ss_pred cccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcc
Q 008778 268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT 347 (554)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (554)
+++ ++++ .+. +....+.++.++++.++...+..++....
T Consensus 171 --~~~---------~~~~--------------~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (377)
T PRK11102 171 --PKE---------RRQP--------------FHL----------------RTTIRNFASLFRHKRVLGYMLASGFSFAG 209 (377)
T ss_pred --ccc---------ccCC--------------CCh----------------HHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 000 0000 000 00011335677888887766655554444
Q ss_pred hhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHH---HHHHHHHHhc
Q 008778 348 GLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILM---AVGYILMAVA 421 (554)
Q Consensus 348 ~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~---~~~~~l~~~~ 421 (554)
...+..+.+.++.+ .|+++. ........++..++++..|++.||+++|+.. ..+..+. .+........
T Consensus 210 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~------~~~~~~~~~~~~~~~~~~~~ 283 (377)
T PRK11102 210 MFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNML------RFGLWIQFIMGIWLVVSALL 283 (377)
T ss_pred HHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 44455555666554 687754 3466778888999999999999999998754 3322221 2222222111
Q ss_pred c-C-chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhh-hhHHHhhhhH
Q 008778 422 L-P-GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLP-LGSFLFSGLL 479 (554)
Q Consensus 422 ~-~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~l~~p~i 479 (554)
+ . ....+...+.+.+.+.........+.|..| +++|.+.++.+.... ++..+ ++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~-g~~~ 342 (377)
T PRK11102 284 DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIV-GALL 342 (377)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHH-HHHH
Confidence 2 1 122223333333334334444455666665 788999998876643 44444 5544
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-23 Score=211.81 Aligned_cols=327 Identities=13% Similarity=0.050 Sum_probs=219.9
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
..+....|++.+++|+|+.+.+++.+...++..+ +++.|+++||+|||+++..+..+..++.+++.++ ++++
T Consensus 25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-------~~~~ 97 (394)
T PRK11652 25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-------HSLT 97 (394)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------ccHH
Confidence 4555667899999999999999987777777765 8999999999999999999999999999988877 7899
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (554)
.+++.|++.|++.+...+.......++++ ++|+++.++...+..++..+++++.+.+.+..+|+..+....+..++..+
T Consensus 98 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 98 VLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 99999999999998887777788889887 46899999998888888877777777666655677666554433322221
Q ss_pred -HHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcc
Q 008778 189 -AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN 267 (554)
Q Consensus 189 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (554)
..++.++
T Consensus 178 ~~~~~~~~------------------------------------------------------------------------ 185 (394)
T PRK11652 178 SMARWMPE------------------------------------------------------------------------ 185 (394)
T ss_pred HHHHhCCc------------------------------------------------------------------------
Confidence 1111111
Q ss_pred cccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcc
Q 008778 268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT 347 (554)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (554)
++++ + ++++ ......++.+++|.+|...+..+.....
T Consensus 186 -~~~~---------~-----------------~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (394)
T PRK11652 186 -TRPA---------D-----------------ARRT----------------RVLASYRTLLSNRRFNCYLLMLIGTLAG 222 (394)
T ss_pred -cCcc---------c-----------------cchh----------------HHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 0000 0 0000 0012335677788877655544433332
Q ss_pred hhhhhccHHHHHhH-hCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh---c
Q 008778 348 GLAVMNNMGQIGLA-LGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV---A 421 (554)
Q Consensus 348 ~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~---~ 421 (554)
...+....+.+.++ +|+++.. .......++..++.++.+++.||.+++... .........+....... .
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 297 (394)
T PRK11652 223 IAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ-----SVICCLLAGLLMWIPGWFGVM 297 (394)
T ss_pred HHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccc
Confidence 22333444556665 6777543 244455666777777777777777632211 11111111111111111 1
Q ss_pred cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhc
Q 008778 422 LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDA 486 (554)
Q Consensus 422 ~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~ 486 (554)
+........++.+++.+...+...+...|.++ +++|++.++.+....+|+.+ ++.+.+.+.+.
T Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~-~~~~~~~~~~~ 360 (394)
T PRK11652 298 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGL-AALLSAMLPQT 360 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHH-HHHHHHHccCC
Confidence 22344556677888888888888888888885 68899999999999999998 88888876544
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-23 Score=213.05 Aligned_cols=429 Identities=16% Similarity=0.064 Sum_probs=272.2
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
...+...+++.+|+|- ..+.+|+++...++... .++.|+++|.||||..++.+.++..+|+++++-+ +|..
T Consensus 61 ~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-------~~~~ 132 (599)
T PF06609_consen 61 VLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-------QNMN 132 (599)
T ss_pred hccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-------CcHH
Confidence 4445566889999985 47778887777777754 8999999999999999999999999999999988 8999
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (554)
.++.+..+.|+|.|.... ....++|..|+ .|+...++.....-....+++.+...+.....|||.+.+..+...+.++
T Consensus 133 ~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~v 211 (599)
T PF06609_consen 133 TFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALV 211 (599)
T ss_pred HHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence 999999999999888764 45558999985 4877776665543333334455555555566788888777765555443
Q ss_pred H-HhhccccCCCCC-cc--hhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCc---ch-hhhHHHHHHHHHhhhcccccch
Q 008778 189 A-IFFLRETTPAST-VD--EEKEEAKYFSIINTVAIVVALYLQVYDFLPNKS---ET-LALIFSGILIILLASPVAIPVY 260 (554)
Q Consensus 189 ~-~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~ 260 (554)
. .++.+++++... .+ .+++.-++.|+++......++.+++..+....+ .+ +..... .+.+.....+++.++
T Consensus 212 l~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa-~lviG~~~Lv~F~~w 290 (599)
T PF06609_consen 212 LIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIA-PLVIGFVLLVAFVVW 290 (599)
T ss_pred HHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchh-hHHHHHHHHHHHHHh
Confidence 3 334444433221 11 133456778888888777777777766664332 22 111111 111111222222222
Q ss_pred hhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhh-hHHHHHH
Q 008778 261 SFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTV-DFWILFV 339 (554)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 339 (554)
|.+. .| ++|+.| .+++|++ .+....+
T Consensus 291 -E~~~---~~------------~~Pl~P-------------------------------------~~Lf~~~r~~~~~lv 317 (599)
T PF06609_consen 291 -EWFG---AP------------KDPLFP-------------------------------------HRLFKDRRGFAALLV 317 (599)
T ss_pred -hhhc---cC------------CCCcCC-------------------------------------HHHhccchHHHHHHH
Confidence 1110 11 123332 5778874 4555545
Q ss_pred HHHhhhcchhhhhccHHHHHhH-hCCCc-----chhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHH
Q 008778 340 SFLCGVGTGLAVMNNMGQIGLA-LGYVD-----VSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAV 413 (554)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~-----~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~ 413 (554)
..+.....++....++|+.... ++-+. ........+++..+|.++.|.+.-+++|-| +.+.++.+++.+
T Consensus 318 i~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~K-----w~li~~~~~~ta 392 (599)
T PF06609_consen 318 ISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIK-----WQLIFGSVLMTA 392 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchh-----HHHHHHHHHHHH
Confidence 5444444444555566665543 33332 223455677788888889999887776433 233445555555
Q ss_pred HHHHHHh---ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCC
Q 008778 414 GYILMAV---ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATP 490 (554)
Q Consensus 414 ~~~l~~~---~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~ 490 (554)
.+..+.. .+....+...++.|++.|.........+.-..|+++.|++.|+..+.+.+|+.+ |..+...++...-.+
T Consensus 393 ~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsI-g~aIy~~I~~n~~~~ 471 (599)
T PF06609_consen 393 FCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSI-GYAIYNAIFTNKLPK 471 (599)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHhhhhH
Confidence 4444433 233345566778888887766666666667788899999999999999999998 677776655322111
Q ss_pred C--------------CC-----------CCc-------cc---------------ccccchHHHHHHHHHHHHHHHHHHH
Q 008778 491 T--------------AG-----------GGN-------TC---------------VGAHCYRLVFVIMAMACIVGFGLDI 523 (554)
Q Consensus 491 ~--------------~~-----------~~~-------~~---------------~~~~~~~~~f~i~~~~~~~~~~~~~ 523 (554)
. +. .+. +. .=+++|+++|+....+.+++.+..+
T Consensus 472 ~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~ 551 (599)
T PF06609_consen 472 ELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAAL 551 (599)
T ss_pred hHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 000 00 0016899999999989888888888
Q ss_pred HhHHh
Q 008778 524 LLAAK 528 (554)
Q Consensus 524 ~l~~~ 528 (554)
++.-.
T Consensus 552 fl~d~ 556 (599)
T PF06609_consen 552 FLGDI 556 (599)
T ss_pred HcCCh
Confidence 87533
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-23 Score=192.01 Aligned_cols=350 Identities=13% Similarity=0.070 Sum_probs=256.5
Q ss_pred chhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchH
Q 008778 30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY 108 (554)
Q Consensus 30 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~ 108 (554)
....+...+++++|+|+|.++.+.+++.-.+... ++|+..++.+|+|.++.+..++++.++|.++-... +.
T Consensus 28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~--------~~ 99 (395)
T COG2807 28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG--------GL 99 (395)
T ss_pred hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--------cH
Confidence 3678889999999999999999999888777774 59999999999999999999999999999986553 56
Q ss_pred HHHHHHHHHHhchhhHhhhhHHHHHHhhccCCCccchHhhHhhhhhhHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHH
Q 008778 109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADD-PAKFLFMLAIVPFVVCL 187 (554)
Q Consensus 109 ~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~ 187 (554)
+.++.+-.+.|.|.+......+..+-++||||-+..+|++....++|+++++.+...+.... +|+.-+.+=..++++.+
T Consensus 100 ~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl 179 (395)
T COG2807 100 PLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLAL 179 (395)
T ss_pred HHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999998887766554443332 34443333223333322
Q ss_pred HHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcc
Q 008778 188 GAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN 267 (554)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (554)
+..+
T Consensus 180 ~~Wl---------------------------------------------------------------------------- 183 (395)
T COG2807 180 LIWL---------------------------------------------------------------------------- 183 (395)
T ss_pred HHHh----------------------------------------------------------------------------
Confidence 2111
Q ss_pred cccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcc
Q 008778 268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT 347 (554)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (554)
.+..+ ++.+ + ...+..+...++|||.-|.+.+.+.+....
T Consensus 184 Pq~~r---------~~~~--------------~-----------------~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~ 223 (395)
T COG2807 184 PQALR---------EQAA--------------S-----------------IATKLVSVRKVWRSPLAWQVTLFMGLQSLL 223 (395)
T ss_pred hhccc---------cccc--------------c-----------------cccccccccccccCchhHHHHHHHHhhHHH
Confidence 00000 0000 0 000111125688999999999999999999
Q ss_pred hhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccCch
Q 008778 348 GLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPGS 425 (554)
Q Consensus 348 ~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 425 (554)
.|..+.|+|.++.|.|++.. ...+++..+......+....+.+|...++.. .....+++.+++.-+.......
T Consensus 224 ~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~-----~~~~~~~~l~G~~G~~~~P~~~ 298 (395)
T COG2807 224 YYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPL-----VVLALLLMLVGLVGLLLAPGQL 298 (395)
T ss_pred HHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchH-----HHHHHHHHHHHHHHHHHhhhhH
Confidence 99999999999999999864 4588899999999999999999985544322 2233333444433332222222
Q ss_pred hHHHHHHHHhhhcccccchHHHHHHh-hCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccch
Q 008778 426 LYIGSIIVGLCYGVRLAVTVPTASEL-FGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCY 504 (554)
Q Consensus 426 ~~~~~~l~g~~~g~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~ 504 (554)
.+...+++|++.|..++.....+.+. -.++..++-.|+....+++-.+. ||.+.|++.|.+|+ |
T Consensus 299 ~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~-GP~l~G~lhDa~gs--------------w 363 (395)
T COG2807 299 PILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAF-GPWLFGFLHDATGS--------------W 363 (395)
T ss_pred HHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhh-hhhhHhHHHHhcCC--------------h
Confidence 23336899999999999776666444 44567778888888888888887 99999999999985 9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008778 505 RLVFVIMAMACIVGFGLDI 523 (554)
Q Consensus 505 ~~~f~i~~~~~~~~~~~~~ 523 (554)
+......+...++..+.-+
T Consensus 364 ~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 364 SAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9988887766666555443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-22 Score=209.51 Aligned_cols=446 Identities=11% Similarity=0.071 Sum_probs=254.8
Q ss_pred CCCCcccccccchhHHHHHHHHHHHhhccc-hhh-hhcHHHHHHhcCCChhhHHHHHHHHH-HHHhhhhhhhhhccc-CC
Q 008778 1 MGFEVSYTSSAGKWLGFVTAVWVQAISGNN-YTF-SNYSDALKTLMNLTQLELNNLSVVKD-IGKAFGLLAGLASDR-IP 76 (554)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~-~~~~~~~~~G~l~dr-~G 76 (554)
||-..+++.. +++..+...+...++.... |.. +....++++++|++.++.+|+...+. ..+...+++|+++|| +|
T Consensus 1 ~~~~~~~~~~-~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G 79 (489)
T PRK10207 1 MNTTAPMGLL-QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLG 79 (489)
T ss_pred CCCCCCcchh-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccc
Confidence 4433343332 4444444444444444333 444 34555678899999999999655554 455568899999999 99
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhccCCCchHHH-HHHHHHHHhchhhHhhhhHHHHHHhhccC---CCccchHhhHhhh
Q 008778 77 APIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ-MCVFLCMGGNSTTWMNTAVLVTCIRNFRR---NRGPVSGILKGYV 152 (554)
Q Consensus 77 ~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~-l~~~r~l~Gig~g~~~~~~~~~i~~~fp~---~rg~a~gi~~~~~ 152 (554)
||++++.|.+++.++++.++++ ++... ++++|+++|+|.|...+.....+.|+||+ +|+.+.++...+.
T Consensus 80 ~r~~~~~g~~~~~~g~~~~~~~-------~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~ 152 (489)
T PRK10207 80 TKRTIVLGAIVLAIGYFMTGMS-------LLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSI 152 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh-------ccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHH
Confidence 9999999999999999999887 44333 55789999999999999999999999974 3578999999999
Q ss_pred hhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCC-cchhhhhhhhhHhHHHHHHHHHHHHHhHhc
Q 008778 153 GLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPAST-VDEEKEEAKYFSIINTVAIVVALYLQVYDF 231 (554)
Q Consensus 153 ~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (554)
++|.++++.+.+.+....+|++.|+++.+..+..++.....+...++.. +.++...+++-......++...++.....
T Consensus 153 nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~- 231 (489)
T PRK10207 153 NIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWL- 231 (489)
T ss_pred HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHH-
Confidence 9999888778887777777888888865544444444444433221111 10010111111111111111111111111
Q ss_pred CCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHH
Q 008778 232 LPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVE 311 (554)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (554)
........ . +..+........++ ++..+
T Consensus 232 -~~~~~~~~-~---~~~~~~~i~~~~f~--------~~~~~--------------------------------------- 259 (489)
T PRK10207 232 -MHNVEVAN-L---VLIVLSIVVTIIFF--------REAFK--------------------------------------- 259 (489)
T ss_pred -HhhhhHHH-H---HHHHHHHHHHHHHH--------HHHhc---------------------------------------
Confidence 00000000 0 00000000000111 00000
Q ss_pred HhhcCCCCCCCchHHhhhhhhhHHHHHHH--HHhhhcchhhhhccHHHHHhH-h-----CCC-cchhhHHHHHHHHhHhh
Q 008778 312 EVKRRPVLGEDHTIFEAMWTVDFWILFVS--FLCGVGTGLAVMNNMGQIGLA-L-----GYV-DVSIFVSLTSIWGFFGR 382 (554)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~-----g~~-~~~~~~~~~~~~~~~g~ 382 (554)
. .+.+|++.+-...+. ..............++.+.++ . |+. +.+...++..+..++..
T Consensus 260 -----~--------~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~ 326 (489)
T PRK10207 260 -----L--------DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVAS 326 (489)
T ss_pred -----C--------CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHH
Confidence 0 022334433322211 222222222333445555553 2 222 22234445566677788
Q ss_pred HHhhcchhhHhhhcCCC-chhHHHHHHHHHHHHHHHH-------Hhc----cCchhHHHHHHHHhhhcccccchHHHHHH
Q 008778 383 IISGSVSEYFIKRAGTP-RPIWNAASQILMAVGYILM-------AVA----LPGSLYIGSIIVGLCYGVRLAVTVPTASE 450 (554)
Q Consensus 383 ~~~G~l~Dr~g~r~~~~-~~~~~~~~~~l~~~~~~l~-------~~~----~~~~~~~~~~l~g~~~g~~~~~~~~~~~~ 450 (554)
++.+++.||+++|+.-+ ...-...+.++.+++++.+ ... +.+.+....++.|++.+...+...+.+.+
T Consensus 327 pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~ 406 (489)
T PRK10207 327 PILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAA 406 (489)
T ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 88899999999886311 1112234445555554322 111 11245567778899999998898999999
Q ss_pred hhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhH
Q 008778 451 LFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 451 ~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~ 526 (554)
..|++.+|.++|+.++..++|+.+ |..+...........++. .....|.+.|...++..+++.++.+...
T Consensus 407 ~aP~~~~g~~~g~~~l~~~ig~~l-g~~l~~~~~~~~~~~~~~-----~~~~~~~~~f~~~~~~~~~~~v~~~~~~ 476 (489)
T PRK10207 407 LVPQHLMGFILGMWFLTQAAAFLL-GGYVATFTAVPDNITDPL-----ETLPVYTNVFGKIGLVTLGVAVVMALMV 476 (489)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccccccch-----hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 776665442111100000 0001267778777777666555544443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-22 Score=206.28 Aligned_cols=346 Identities=17% Similarity=0.125 Sum_probs=211.8
Q ss_pred hhhhcHHHHHHhcCCChhhHHHHH-HHHHHHHhhhhhhhhhcccCCchHHH-HHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 32 TFSNYSDALKTLMNLTQLELNNLS-VVKDIGKAFGLLAGLASDRIPAPIIL-LIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 32 ~~~~~~~~i~~~~~~s~~~~~~~~-~~~~~~~~~~~~~G~l~dr~G~r~~~-~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
..+...+.+++++|+|.++++++. .....+.+.+++.|...||+|+|+.+ +.+.++.+++..+.+++ ++++
T Consensus 34 ~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~~~~~~~~~-------~~~~ 106 (393)
T PRK15011 34 QTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWN-------RNYF 106 (393)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHh-------hHHH
Confidence 344555567899999999999965 45555666666555559999999875 45556666777777776 7888
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhccC-CC--ccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NR--GPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVC 186 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~r--g~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 186 (554)
.+++.+.+.|...+...+.....+.++.|+ +| +...++...+.++|.++++++.+.+.+..+|+..+....+..++.
T Consensus 107 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~ 186 (393)
T PRK15011 107 VLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVC 186 (393)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 876654444433445566666666676653 24 234577778888999998888887777677887776665444333
Q ss_pred HHHHh-hccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhh
Q 008778 187 LGAIF-FLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKS 265 (554)
Q Consensus 187 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (554)
.+..+ .+++.
T Consensus 187 ~~~~~~~~~~~--------------------------------------------------------------------- 197 (393)
T PRK15011 187 GVMVWLFLPSM--------------------------------------------------------------------- 197 (393)
T ss_pred HHHHHhhcCcc---------------------------------------------------------------------
Confidence 32211 11111
Q ss_pred cccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhh-hhHHHHHHHHHhh
Q 008778 266 WNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWT-VDFWILFVSFLCG 344 (554)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 344 (554)
+++ . ++++ ++ .+ .. + ++ +..+......+..
T Consensus 198 ----~~~-~-------~~~~--------------~~-----------~~-~~--------~---~~~~~~~~~~~~~~~~ 228 (393)
T PRK15011 198 ----RKE-L-------PLAT--------------GT-----------LE-AP--------R---RNRRDTLLLFVICTLM 228 (393)
T ss_pred ----CCC-C-------cccc--------------cc-----------cc-cc--------c---cccccHHHHHHHHHHH
Confidence 000 0 0000 00 00 00 0 01 1122222222222
Q ss_pred hcchhhhhccHHHHHhH-hCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-
Q 008778 345 VGTGLAVMNNMGQIGLA-LGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV- 420 (554)
Q Consensus 345 ~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~- 420 (554)
......+..+.|.+.++ +|+++.. ...+...+..++++++.|+++||+++|+.. ..+.....+.+.....
T Consensus 229 ~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~ 302 (393)
T PRK15011 229 WGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLM------RVAAVAGVCFYAGMLMA 302 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH------HHHHHHHHHHHHHHHHH
Confidence 23333344567777754 6777533 344555667788999999999999998643 2222222222222222
Q ss_pred ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCccccc
Q 008778 421 ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVG 500 (554)
Q Consensus 421 ~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~ 500 (554)
.++....+..++.+++.|...+..+....|.+| +++|++.++.+...++|..+ +|.+.|.+.|..+
T Consensus 303 ~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~-g~~l~G~i~~~~g------------ 368 (393)
T PRK15011 303 HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWII-AGSLAGIVAEIWN------------ 368 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHhh------------
Confidence 222233344455555556555556677788886 56899999999989999998 8999999999875
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 501 AHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 501 ~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
|+..|.+.+++.+++++..+..
T Consensus 369 ---~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 369 ---YHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHhh
Confidence 8999988887777776655443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-24 Score=215.88 Aligned_cols=328 Identities=16% Similarity=0.098 Sum_probs=219.6
Q ss_pred HHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHH
Q 008778 40 LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG 118 (554)
Q Consensus 40 i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~ 118 (554)
+.+|.+....|.+++.+.+.+++++ .+++|.+.||++..+.+....+.+++-.++.+.. +|++.+++.|++.
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-------~s~~~~ialr~ll 144 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-------HSFPGLIALRFLL 144 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHH
Confidence 5589999999999988888888865 8999999999999988888888888888777776 8999999999999
Q ss_pred hchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcC------CChHHHHHHHHHHHHHHH-HHHH
Q 008778 119 GNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA------DDPAKFLFMLAIVPFVVC-LGAI 190 (554)
Q Consensus 119 Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~------~~~~~~~~~~~~~~~~~~-~~~~ 190 (554)
|+.++..+|+...++..||. ++||+.+|++.+..++|+++++.+..++.. ..+|++.|++..+..+.. ++..
T Consensus 145 Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f 224 (495)
T KOG2533|consen 145 GLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF 224 (495)
T ss_pred HHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence 99999999999999999996 579999999999999999999999888642 356888777776554433 3444
Q ss_pred hhccccCCCC--CcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhccc
Q 008778 191 FFLRETTPAS--TVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL 268 (554)
Q Consensus 191 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (554)
++++..|..- .+++++.... +
T Consensus 225 ~~lp~~P~~~~fl~~~ek~~~~---------------------------------------------------------~ 247 (495)
T KOG2533|consen 225 FFLPDNPSKAWFLTDEEKELVV---------------------------------------------------------E 247 (495)
T ss_pred EEecCChhhccccchHHHHHHH---------------------------------------------------------H
Confidence 4444444311 0000000000 0
Q ss_pred ccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcch
Q 008778 269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348 (554)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (554)
+- ++.+ .+...++.+...+++++++|..|.+++..++.....
T Consensus 248 ~~-----------~~~~---------------------------~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~ 289 (495)
T KOG2533|consen 248 RL-----------RESP---------------------------SGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVN 289 (495)
T ss_pred HH-----------Hhcc---------------------------CCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhcc
Confidence 00 0000 000000123456799999999999999999999999
Q ss_pred hhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhH----hhhcCCCchhHHHHHHHHHHHHHHHHHhc
Q 008778 349 LAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYF----IKRAGTPRPIWNAASQILMAVGYILMAVA 421 (554)
Q Consensus 349 ~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~----g~r~~~~~~~~~~~~~~l~~~~~~l~~~~ 421 (554)
+.+.+++|.+.++ .|++.. ....+.+.++++++.+++|+++||. .+|. .......+...++...+...
T Consensus 290 ~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~-----~~~~~~~~~~~~g~~~l~~~ 364 (495)
T KOG2533|consen 290 YGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRL-----LFIVFLCLYAIIGAISLLAA 364 (495)
T ss_pred ccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHH-----HHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988 467753 3466788999999999999999995 3332 22233334344453444333
Q ss_pred c-CchhHHHHHHHHhhhcccccchHHHHHHhhCC-cchhhHHHHHHhhhhhhHHH
Q 008778 422 L-PGSLYIGSIIVGLCYGVRLAVTVPTASELFGL-KYYGLIYNILILNLPLGSFL 474 (554)
Q Consensus 422 ~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~l 474 (554)
. .............+.+...+.......+.... .++-+..+......+.++.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~ 419 (495)
T KOG2533|consen 365 AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAI 419 (495)
T ss_pred ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHh
Confidence 2 32233222222233333333444444444432 23333333344444555544
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-23 Score=207.37 Aligned_cols=342 Identities=13% Similarity=0.013 Sum_probs=227.8
Q ss_pred hhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCch----HHHHHHHHHHHHHHHHHHHHhhccCCCch
Q 008778 33 FSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAP----IILLIGSLEGLVGYGAQWLVVSRKIQPLS 107 (554)
Q Consensus 33 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r----~~~~~g~~l~~~~~~~~~~a~~~~~~~~s 107 (554)
+..+.|.+.+|+|.|.++++++.+.+.+.... +++.|++.||+||| +.+.++..... ....... ++
T Consensus 23 ~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~--~~~~~~~-------~~ 93 (382)
T PRK11128 23 FLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFA--VAFWFGA-------HS 93 (382)
T ss_pred HhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHH--HHHHHhc-------cc
Confidence 34455677889999999999987777777654 99999999999984 33332222221 1112222 68
Q ss_pred HHHHHHHHHHHhchhhHhhhhHHHHHHhhccCCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 008778 108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL 187 (554)
Q Consensus 108 ~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 187 (554)
+|.+++.|++.|++.+...+....++.+| +++|+++.|.......+|.++++++++.+.+..+|+..++......++..
T Consensus 94 ~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 94 FWLLFVAIGLFNLFFSPLVPLTDALANTW-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML 172 (382)
T ss_pred HHHHHHHHHHHHHHHcccccHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 99999999999999888777665655554 66789999999888899999998888888777777776665543322222
Q ss_pred HHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcc
Q 008778 188 GAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN 267 (554)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (554)
+..+..++
T Consensus 173 ~~~~~~~~------------------------------------------------------------------------ 180 (382)
T PRK11128 173 LGQLLRPT------------------------------------------------------------------------ 180 (382)
T ss_pred HHHHccCC------------------------------------------------------------------------
Confidence 11110000
Q ss_pred cccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcc
Q 008778 268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT 347 (554)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (554)
.+|++ +++ + +.++...++++++|+|.+|...+..++....
T Consensus 181 ~~~~~---------~~~-----------------------------~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 220 (382)
T PRK11128 181 IMPQG---------ESR-----------------------------Q--QESAGWPAWKALLKEPTVWRFLLCVSLLQGS 220 (382)
T ss_pred CCCcc---------ccc-----------------------------c--ccccccchHHHHHcChhHHHHHHHHHHHHHH
Confidence 00000 000 0 0000123458899999999877766555444
Q ss_pred hhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-ccCc
Q 008778 348 GLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-ALPG 424 (554)
Q Consensus 348 ~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~ 424 (554)
......+.+.+.++.|+++. +...+...+...++.+..|++.||+++|+.+ ..+..+.++..+.+.. ++.+
T Consensus 221 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l------~~~~~~~~~~~~~~~~~~~~~ 294 (382)
T PRK11128 221 HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLL------LLSAICGVVRWGLMGSTTALP 294 (382)
T ss_pred hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH------HHHHHHHHHHHHHHHhhhhHH
Confidence 44555667778888888753 3355566778888889999999999888754 4455555555544443 3344
Q ss_pred hhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHH-hhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccc
Q 008778 425 SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILI-LNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHC 503 (554)
Q Consensus 425 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~ 503 (554)
.+++..++.|++++...+....+..+. +++++++..++.+ ....+|..+ ||.+.|.++|..+
T Consensus 295 ~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~i-g~~i~G~l~~~~g--------------- 357 (382)
T PRK11128 295 WLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAI-MTVLSGFLYQHLG--------------- 357 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcc---------------
Confidence 556677888888887777666777776 4666788888886 445666677 8999999999986
Q ss_pred hHHHHHHHHHHHHHHHH
Q 008778 504 YRLVFVIMAMACIVGFG 520 (554)
Q Consensus 504 ~~~~f~i~~~~~~~~~~ 520 (554)
+ ..|+..+++.+.+++
T Consensus 358 ~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 358 A-GVFWVMALVALPALF 373 (382)
T ss_pred H-HHHHHHHHHHHHHHH
Confidence 4 466666655554433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=207.31 Aligned_cols=356 Identities=13% Similarity=0.076 Sum_probs=224.5
Q ss_pred Hhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhhhhhhhhhcccC-----CchH-HHHHHHHHHHHHHHHHHH
Q 008778 25 AISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRI-----PAPI-ILLIGSLEGLVGYGAQWL 97 (554)
Q Consensus 25 ~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~dr~-----G~r~-~~~~g~~l~~~~~~~~~~ 97 (554)
+..|.. .......|.+.++-|+|.+|++++...... .++.+++|++.||+ |||+ .+..+.++.+++..+.++
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~ 87 (402)
T PRK11902 9 FASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF 87 (402)
T ss_pred HHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh
Confidence 334554 333456677888889999999998655544 46799999999999 7765 788888888888887766
Q ss_pred HhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCC-ChHHHH
Q 008778 98 VVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFL 175 (554)
Q Consensus 98 a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~-~~~~~~ 175 (554)
.... ++++.+++..++.+...+...++..+.+.|++|+ +|+++.++...+.++|..+++++...+.+. .+|+..
T Consensus 88 ~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~ 163 (402)
T PRK11902 88 CPPH----AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNT 163 (402)
T ss_pred cCcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHH
Confidence 5211 4678888888888888888888889999999986 599999999999999998888887777664 367777
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcc
Q 008778 176 FMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPV 255 (554)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (554)
+++.....++..+..+..+
T Consensus 164 f~i~a~~~l~~~l~~~~~~------------------------------------------------------------- 182 (402)
T PRK11902 164 YLLMAGLMLAGALTTLWAP------------------------------------------------------------- 182 (402)
T ss_pred HHHHHHHHHHHHHHHHhcC-------------------------------------------------------------
Confidence 6665544433322211111
Q ss_pred cccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHH
Q 008778 256 AIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFW 335 (554)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (554)
+|++ . ++++ ++ . ++ +...+.++++|||.+|
T Consensus 183 -------------e~~~-~-------~~~~-------------~~-~----------~~-----~~~~~~~~l~~~~~~~ 212 (402)
T PRK11902 183 -------------EPEV-P-------ARPP-------------RS-L----------GE-----AVVGPLRDFFSRRGAW 212 (402)
T ss_pred -------------CCcc-c-------cccc-------------ch-h----------HH-----HHHHHHHHHHhCcCHH
Confidence 1111 0 0000 00 0 00 0112346788999988
Q ss_pred HHHHHHHhhhcchhhhhccHHHH-HhHhCCCcchh--hHHHHH-HHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHH
Q 008778 336 ILFVSFLCGVGTGLAVMNNMGQI-GLALGYVDVSI--FVSLTS-IWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILM 411 (554)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~--~~~~~~-~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~ 411 (554)
.+.+..++..........+.+++ .++.|+++... .....+ ++..+|.++.|++.||+++|+.. ..+..+.
T Consensus 213 ~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l------~~~~~~~ 286 (402)
T PRK11902 213 ALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSL------MLFGVLQ 286 (402)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHH
Confidence 77665544333222222233333 44578876543 333333 45788999999999999987643 2222222
Q ss_pred HHH---HHHHHhc-cC-chhHHHHHH----HHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHH
Q 008778 412 AVG---YILMAVA-LP-GSLYIGSII----VGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGY 482 (554)
Q Consensus 412 ~~~---~~l~~~~-~~-~~~~~~~~l----~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~ 482 (554)
.+. +...... ++ +.+.+...+ .|++.+...+....++.+.+| ++..++......++..+ ++.+.|.
T Consensus 287 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~-~~~~~G~ 361 (402)
T PRK11902 287 AVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS----ATQYALLSALASVGRVY-VGPTSGY 361 (402)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 222 2222222 22 223333333 333344444444455555554 44556666666788876 4558999
Q ss_pred HHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHH
Q 008778 483 LYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLD 522 (554)
Q Consensus 483 i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~ 522 (554)
++|..| |+..|.+.+.++++++++.
T Consensus 362 l~~~~G---------------~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 362 LVEAYG---------------WPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHhC---------------hHHHHHHHHHHHHHHHHHH
Confidence 999987 8999999888887776654
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=193.27 Aligned_cols=366 Identities=16% Similarity=0.111 Sum_probs=254.4
Q ss_pred HHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHH
Q 008778 15 LGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGY 92 (554)
Q Consensus 15 ~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~ 92 (554)
..++.+..+.+..|+. ...+...|.+++.|+++..|.+.+..++..++.. ++++|.+.+|+|.|+.+++|+.++++|.
T Consensus 13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~ 92 (422)
T COG0738 13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA 92 (422)
T ss_pred eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3344444444445554 6778899999999999999999988888888865 8999999999999999999999999999
Q ss_pred HHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCCh
Q 008778 93 GAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDP 171 (554)
Q Consensus 93 ~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~ 171 (554)
.+..=+... .+|..++..-++.|.|.+..-+++..+++...|+ +....+.+.++.+++|++++|++++.++..+
T Consensus 93 ~lF~pAa~~----~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~- 167 (422)
T COG0738 93 ALFWPAASS----KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSG- 167 (422)
T ss_pred HHHhhhhhh----hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh-
Confidence 997643222 5788888899999999999999999999999975 5778899999999999999888887664321
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCcc--hhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHH
Q 008778 172 AKFLFMLAIVPFVVCLGAIFFLRETTPASTVD--EEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILII 249 (554)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (554)
|. .....+.... ...-..+++.+.....+...+....
T Consensus 168 ~~--------------------~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~--------------------- 206 (422)
T COG0738 168 VA--------------------LTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLI--------------------- 206 (422)
T ss_pred hh--------------------hccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---------------------
Confidence 00 0000000000 0001112233332221111110000
Q ss_pred HhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhh
Q 008778 250 LLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAM 329 (554)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (554)
... |.|+. + +.+| + ..++.+....+++
T Consensus 207 -------------~~~--k~p~~-~-------~~~~---------------~---------------~~~~~~~~~~~l~ 233 (422)
T COG0738 207 -------------LLS--KLPDL-Q-------VAAP---------------S---------------LGASGSAGLSSLF 233 (422)
T ss_pred -------------Hhc--cCCcC-C-------cccc---------------c---------------ccccccchHHHHH
Confidence 000 33433 0 0000 0 0000111457899
Q ss_pred hhhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHH
Q 008778 330 WTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAA 406 (554)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~ 406 (554)
++|.++.-.+..+++.+.......+++.+..+ .|.++. +..++.+..+.++||+++-++..|+...+.+ ..
T Consensus 234 ~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~L------af 307 (422)
T COG0738 234 QNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYL------AF 307 (422)
T ss_pred hChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH------HH
Confidence 99999999999999999999999999999988 677754 3478888999999999999999998876643 33
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhc
Q 008778 407 SQILMAVGYILMAVALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDA 486 (554)
Q Consensus 407 ~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~ 486 (554)
......+.++.....+.........+.|++.+..+|+..+...+..| ++ ....|.......+|+++ -|.+.|++.|.
T Consensus 308 ~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAi-iP~l~G~i~d~ 384 (422)
T COG0738 308 YALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAI-IPPLQGVIADM 384 (422)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchH-HHHHHHHHHHh
Confidence 33222222333333444556667888999999999999999999997 44 44445556666778887 59999999999
Q ss_pred cC
Q 008778 487 QA 488 (554)
Q Consensus 487 ~~ 488 (554)
.+
T Consensus 385 ~g 386 (422)
T COG0738 385 FG 386 (422)
T ss_pred hh
Confidence 97
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.8e-23 Score=235.22 Aligned_cols=347 Identities=11% Similarity=0.013 Sum_probs=231.0
Q ss_pred HHHHhcCCChhh-HHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHH---HHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 008778 39 ALKTLMNLTQLE-LNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLI---GSLEGLVGYGAQWLVVSRKIQPLSYWQMCV 113 (554)
Q Consensus 39 ~i~~~~~~s~~~-~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~---g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~ 113 (554)
.+.++.+.+... .++..+.+.+.++ +++++|+++||+|||+++.. +.+.+.+..+.+... ++++++++
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~-------~s~~~l~~ 113 (1140)
T PRK06814 41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL-------NSVPLLFA 113 (1140)
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHH
Confidence 344445444444 5556666666664 59999999999999997533 222222222222232 68999999
Q ss_pred HHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhh
Q 008778 114 FLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192 (554)
Q Consensus 114 ~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (554)
+|+++|++.++..++..+++.+++|+ +|++++|+..++.++|.++++++++.+....+|+..++..++..+..++..+.
T Consensus 114 ~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (1140)
T PRK06814 114 ALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLF 193 (1140)
T ss_pred HHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999975 69999999999999999999888888887777777764444444333332222
Q ss_pred ccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCC
Q 008778 193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKR 272 (554)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (554)
+++.+. ++
T Consensus 194 ~~~~~~------------------------------------------------------------------------~~ 201 (1140)
T PRK06814 194 IPKTGN------------------------------------------------------------------------AA 201 (1140)
T ss_pred CCCCCC------------------------------------------------------------------------CC
Confidence 211110 00
Q ss_pred CCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchhhhh
Q 008778 273 TEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVM 352 (554)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (554)
. ..++ +. + ........++.+.+++.+|...+..++.......+.
T Consensus 202 -~-------~~~~---------------~~--~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1140)
T PRK06814 202 -P-------DLKI---------------DR--N-----------IIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVL 245 (1140)
T ss_pred -C-------CCee---------------cc--c-----------hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 00 0 000001234677888999988887766555555566
Q ss_pred ccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh---------
Q 008778 353 NNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV--------- 420 (554)
Q Consensus 353 ~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~--------- 420 (554)
.++|.+.++ +|.++. +...+..+++.++|.+..|+++|+..+++.. ..+.++.++..+.+..
T Consensus 246 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (1140)
T PRK06814 246 SQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYV------PIGALLMGLFGLDLAFASSSVPAEP 319 (1140)
T ss_pred HHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeee------hHHHHHHHHHHHHHHhccccccccc
Confidence 678888876 577653 4477888899999999999999877665443 1111112111111111
Q ss_pred ------------ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccC
Q 008778 421 ------------ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQA 488 (554)
Q Consensus 421 ------------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~ 488 (554)
.+.+.+++..+++|++.+...+...+++.+..|++.+|+++|+.++...++..+ ++++.|.+.+...
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~i-g~~~~g~l~~~~~ 398 (1140)
T PRK06814 320 AQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVA-GTIILALLQALGF 398 (1140)
T ss_pred ccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHH-HHHHHHHHHHhcc
Confidence 223345566778888888888888899999999999999999999999999998 8989999886543
Q ss_pred CCCCCCCcccccccchHHHHHHHHHHHHHHHHH
Q 008778 489 TPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGL 521 (554)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~ 521 (554)
. +...+++.+++.++..+.
T Consensus 399 ~--------------~~~~~~~~~~~~~~~~~~ 417 (1140)
T PRK06814 399 S--------------IPWIILFIALANLIVAIL 417 (1140)
T ss_pred C--------------HHHHHHHHHHHHHHHHHH
Confidence 2 666666665554444433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-22 Score=233.23 Aligned_cols=358 Identities=13% Similarity=0.014 Sum_probs=231.2
Q ss_pred hhcHHHHHHhcCCChhh--HHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 008778 34 SNYSDALKTLMNLTQLE--LNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ 110 (554)
Q Consensus 34 ~~~~~~i~~~~~~s~~~--~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~ 110 (554)
....+.+.++++.+.+. .+++.+.+.++.+ +++++|+++||+|||++++.+.++..++.++..++... ++++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~----~~~~~ 105 (1146)
T PRK08633 30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL----GWFWL 105 (1146)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH----ccHHH
Confidence 34445566777765544 5666667777765 48999999999999999999887766666554443222 57899
Q ss_pred HHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcCC--------C-hHHHHHHH-H
Q 008778 111 MCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFAD--------D-PAKFLFML-A 179 (554)
Q Consensus 111 l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~--------~-~~~~~~~~-~ 179 (554)
+++.|+++|++.+...++...++.+++| ++|++++|+...+.++|.++++.+++.+... . +|.+.+.+ .
T Consensus 106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 185 (1146)
T PRK08633 106 AFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVL 185 (1146)
T ss_pred HHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHH
Confidence 9999999999999999999999999997 4699999999999999998877777666543 1 12222111 1
Q ss_pred HHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccc
Q 008778 180 IVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPV 259 (554)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (554)
+...++.++..+.+++
T Consensus 186 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 201 (1146)
T PRK08633 186 LAVAVLGLIFAYRLPK---------------------------------------------------------------- 201 (1146)
T ss_pred HHHHHHHHHHHhcCcC----------------------------------------------------------------
Confidence 1111111111111111
Q ss_pred hhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHH
Q 008778 260 YSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFV 339 (554)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (554)
.|++ . .... + .+... ........++.+++++.+|...+
T Consensus 202 ---------~~~~-~-------~~~~--~---------~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~ 239 (1146)
T PRK08633 202 ---------VPAA-A-------PEVF--D---------KKKYL--------------FPKLLWRNLKLLRSDRVLWLAII 239 (1146)
T ss_pred ---------CCCC-C-------cccc--c---------ccccc--------------cHHHHHHHHHHHhcCcHHHHHHH
Confidence 1110 0 0000 0 00000 00000123466778888887766
Q ss_pred HHHhhhcchhhhhccHHHHHhH-hCCCcc---hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHH
Q 008778 340 SFLCGVGTGLAVMNNMGQIGLA-LGYVDV---SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGY 415 (554)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~ 415 (554)
..++..........+++.+.++ +|++.. ....+...++.++|.++.|++.||+++++.. .++.++++++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~------~~~~~~~~~~~ 313 (1146)
T PRK08633 240 GLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLV------PLGALGLALSL 313 (1146)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccch------hHHHHHHHHHH
Confidence 6555544444555667777654 687755 3366777888899999999999999877654 34444444444
Q ss_pred HHHHhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCC
Q 008778 416 ILMAVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGG 494 (554)
Q Consensus 416 ~l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~ 494 (554)
+++... +.....+..+++|++.+...+...+++.+..|++.+|+++|+.++...++.++ ++.+.+.+.. .+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~-~~~~~~~l~~-~~~----- 386 (1146)
T PRK08633 314 FLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLL-FLALTTLFSG-LGL----- 386 (1146)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHH-HHHHHHHHHH-hcc-----
Confidence 444332 33345567778888888877788888999999999999999999999999887 6766555443 321
Q ss_pred CcccccccchHHHHHHHHHHHHHHHHHH
Q 008778 495 GNTCVGAHCYRLVFVIMAMACIVGFGLD 522 (554)
Q Consensus 495 ~~~~~~~~~~~~~f~i~~~~~~~~~~~~ 522 (554)
.+...|++.+.+.++..+..
T Consensus 387 --------~~~~~~~~~~~~~~~~~~~~ 406 (1146)
T PRK08633 387 --------SPAGLFYLIALVTLIGTLYT 406 (1146)
T ss_pred --------CHHHHHHHHHHHHHHHHHHH
Confidence 15556666665554444433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-22 Score=203.63 Aligned_cols=360 Identities=13% Similarity=0.076 Sum_probs=222.9
Q ss_pred hcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHH-HhhccCCCchHHHHH
Q 008778 35 NYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWL-VVSRKIQPLSYWQMC 112 (554)
Q Consensus 35 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~-a~~~~~~~~s~~~l~ 112 (554)
...+.+.+++|++..+.+++.+...+... .+++.|+++||+|||+.++.+....+++...... ........+..+.++
T Consensus 24 ~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (396)
T TIGR00882 24 FFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAI 103 (396)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33344677899999999997767667665 5899999999999999998877666554433211 100000001233445
Q ss_pred HHHHHHhchhhHhhhhHHHHHHhhccCCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhh
Q 008778 113 VFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192 (554)
Q Consensus 113 ~~r~l~Gig~g~~~~~~~~~i~~~fp~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (554)
+.+++.|++.+...+.......+. +++++...|......++|.++++++.+.+ .+.+|+..++......++..+..+.
T Consensus 104 ~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~g~~~~g~l-~~~~~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 104 VGGLYLGFVFSAGAGAIEAYIEKV-SRNSNFEYGKARMFGCVGWALCASIAGIL-FSIDPQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred HHHHHHHHHhccchhhHHHHHHHh-hhhcccccchhhhhcccHHHHHHHHHhhh-hccCchHHHHHHHHHHHHHHHHHHH
Confidence 668888887777666655444442 23456677887777789888877775544 3456777776665555444332222
Q ss_pred ccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCC
Q 008778 193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKR 272 (554)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (554)
.++.+ |++
T Consensus 182 ~~~~~------------------------------------------------------------------------~~~ 189 (396)
T TIGR00882 182 AKPKA------------------------------------------------------------------------PSS 189 (396)
T ss_pred hCCCC------------------------------------------------------------------------chh
Confidence 11110 000
Q ss_pred CCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchhhhh
Q 008778 273 TEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVM 352 (554)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (554)
++.+. + .++++...+..+.++++|||.+|.+.+..++.........
T Consensus 190 --------~~~~~-------------~-------------~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 235 (396)
T TIGR00882 190 --------ATVAN-------------A-------------LGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFD 235 (396)
T ss_pred --------hhhhc-------------c-------------cccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 0000000112245788899998876655544333333344
Q ss_pred ccHHHHHhHh----CCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-ccCch
Q 008778 353 NNMGQIGLAL----GYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-ALPGS 425 (554)
Q Consensus 353 ~~~~~~~~~~----g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~ 425 (554)
.+.+.+.++. +.+.. +...+...+...++.+..|++.||+++|+.. .++..+.++....... .+++.
T Consensus 236 ~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l------~~~~~l~~l~~~~~~~~~~~~~ 309 (396)
T TIGR00882 236 QQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNAL------LIAGTIMSVRIIGSSFATTALE 309 (396)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH------HHHHHHHHHHHHHHHhcCChHH
Confidence 4566666653 22222 2355666777888899999999999998754 4555555555544333 34444
Q ss_pred hHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHH-HHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccch
Q 008778 426 LYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNI-LILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCY 504 (554)
Q Consensus 426 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~ 504 (554)
+++..++.|++..........+..+..+++.++++.+. .+....+|+.+ +|.+.|++.|..| |
T Consensus 310 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~-~~~l~G~l~~~~G---------------~ 373 (396)
T TIGR00882 310 VVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIF-LSTLAGNMYDSIG---------------F 373 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHH-HHHhHHHHHHhcc---------------c
Confidence 55566667766554444444566777777887777766 56788999998 8999999999886 8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008778 505 RLVFVIMAMACIVGFGLDIL 524 (554)
Q Consensus 505 ~~~f~i~~~~~~~~~~~~~~ 524 (554)
+.+|.+.+++.++..+...+
T Consensus 374 ~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 374 QGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999888777666544
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-25 Score=211.69 Aligned_cols=368 Identities=15% Similarity=0.080 Sum_probs=239.0
Q ss_pred cchhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHH-hhhhhhhhhcccCCchHHHHHHHHHH
Q 008778 11 AGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLIGSLEG 88 (554)
Q Consensus 11 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~dr~G~r~~~~~g~~l~ 88 (554)
...+..++..+++++..-+. |..+-..+++++.||+++++.+++++...+.. +++|+.|.+.|||.||+++.+|..++
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW 108 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence 34456666667777766554 88888889999999999999999887777766 45999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhc
Q 008778 89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF 167 (554)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~ 167 (554)
.++.++++++ +.||++.++|.+.|+|++...+.+...++|.||+ +|+++++++..+..+|+.++.+.+..+.
T Consensus 109 ~~Av~~~~fs-------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va 181 (493)
T KOG1330|consen 109 TLAVFASGFS-------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVA 181 (493)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeec
Confidence 9999999999 7899999999999999999999999999999986 7999999999999999866555444443
Q ss_pred CC-ChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHH
Q 008778 168 AD-DPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGI 246 (554)
Q Consensus 168 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (554)
+. .+||+-+....+..++..+..+++.
T Consensus 182 ~~~~~Wr~af~~~avl~vi~~~L~~~f~---------------------------------------------------- 209 (493)
T KOG1330|consen 182 SLTFWWRWAFRGSAVLGVIVGLLVFLFV---------------------------------------------------- 209 (493)
T ss_pred cCccceEEEEEeehHHHHHHHHHHHhhc----------------------------------------------------
Confidence 32 2355555544444433333222111
Q ss_pred HHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHH
Q 008778 247 LIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIF 326 (554)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (554)
++|++...++.|.+.+ ...+.....++.+
T Consensus 210 ---------------------~eP~rga~~~~~~~~~------------------------------~~~~~ts~~kDl~ 238 (493)
T KOG1330|consen 210 ---------------------REPERGARDEVDGENK------------------------------MVKPFTSVWKDLK 238 (493)
T ss_pred ---------------------cCcccccccccccCCc------------------------------CCCCccchHHHHH
Confidence 3333200000000000 0001111223345
Q ss_pred hhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHh----HhCCCc--chhhHHHHHHHHhHhhHHhhcchhhHhhhcCC-C
Q 008778 327 EAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGL----ALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKRAGT-P 399 (554)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~--~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~-~ 399 (554)
.+.+++.+....+.+....+....+..+.|.+.+ -.|.++ ......+...++.+|.+.+|.++||+-+++.- .
T Consensus 239 ~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~ 318 (493)
T KOG1330|consen 239 VLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSG 318 (493)
T ss_pred HHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhccccc
Confidence 5556666655555444333333334445554432 235543 23466788899999999999999997653321 1
Q ss_pred chhHHHHHHHH---HHHHHHHH-HhccCc--hhHHHHHHHHhhhc-ccccchHHHHHHhhCCcchhhHHHHHHhhhhhhH
Q 008778 400 RPIWNAASQIL---MAVGYILM-AVALPG--SLYIGSIIVGLCYG-VRLAVTVPTASELFGLKYYGLIYNILILNLPLGS 472 (554)
Q Consensus 400 ~~~~~~~~~~l---~~~~~~l~-~~~~~~--~~~~~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 472 (554)
+...-.+...+ ..+.++.+ ...... ...+.++++|.... ..+++...+..+++++++|.+++++....--+.+
T Consensus 319 ~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fg 398 (493)
T KOG1330|consen 319 TLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFG 398 (493)
T ss_pred chhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhc
Confidence 11111111111 12222222 211112 23344445554433 2445666778899999999999999988766655
Q ss_pred HHhhhhHHHHHHhccC
Q 008778 473 FLFSGLLAGYLYDAQA 488 (554)
Q Consensus 473 ~l~~p~i~g~i~~~~~ 488 (554)
-..+|.+.|.+.|+.-
T Consensus 399 d~~~p~ivGilsd~l~ 414 (493)
T KOG1330|consen 399 DAASPYIVGILSDKLR 414 (493)
T ss_pred cCCCcceehhHHHHhh
Confidence 5536769999998764
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=201.45 Aligned_cols=317 Identities=12% Similarity=0.004 Sum_probs=210.2
Q ss_pred hhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhhhhhhhhhcccC-----CchHH-HHHHHHHHHHHHHHHHHHhhccCCC
Q 008778 32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRI-----PAPII-LLIGSLEGLVGYGAQWLVVSRKIQP 105 (554)
Q Consensus 32 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~dr~-----G~r~~-~~~g~~l~~~~~~~~~~a~~~~~~~ 105 (554)
..+...|.+.+|+|+|.+|+++..+..... .+.+++|++.||+ |||+. ++.+.++.+++....++....
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~---- 80 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLVGLPY-SLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS---- 80 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc----
Confidence 455677889999999999999986553333 3489999999998 88886 566777777776666554221
Q ss_pred chHHHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcCCCh--------HHHHH
Q 008778 106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDP--------AKFLF 176 (554)
Q Consensus 106 ~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~--------~~~~~ 176 (554)
.+.+.+....++.+++.+...++..+.+.|++| |+|+++.|+...+..+|.++++++...+....+ |+..+
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f 160 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIF 160 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHH
Confidence 466777777888888888888888899999996 579999999999999999888888776655443 66666
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhccc
Q 008778 177 MLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVA 256 (554)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (554)
++..+..++.++..++..
T Consensus 161 ~i~ai~~l~~~~~~~~~~-------------------------------------------------------------- 178 (356)
T TIGR00901 161 FWTALLILPGLLVTLFLA-------------------------------------------------------------- 178 (356)
T ss_pred HHHHHHHHHHHHHHHHhc--------------------------------------------------------------
Confidence 555544433332211110
Q ss_pred ccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhh---
Q 008778 257 IPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVD--- 333 (554)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 333 (554)
++|++ . ++ ++ ++ .. ++ ....+++++++|.
T Consensus 179 -----------~e~~~-~---------~~-------------~~-~~-~~------~~------~~~~~~~~~~~~~~~~ 210 (356)
T TIGR00901 179 -----------KEPQE-D---------AS-------------VP-KP-LT------QA------VLKPIREFFQRKNMIQ 210 (356)
T ss_pred -----------cCCCc-c---------cc-------------cc-hh-HH------HH------HHHHHHHHHHhcCchH
Confidence 11111 0 00 00 00 00 00 0112355666664
Q ss_pred HHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcchh--hHHHHH-HHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHH
Q 008778 334 FWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSI--FVSLTS-IWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQIL 410 (554)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~-~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l 410 (554)
++.+.+..++..........+.+++.++.|+++... .....+ +...+|.+++|++.||+++|+.. ..+.++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l------~~~~~~ 284 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYAL------LLFGIV 284 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH------HHHHHH
Confidence 666555555444555556677888888888876543 333344 56788999999999999988764 333333
Q ss_pred HHHHHHHHHh---c--------cC-chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhh
Q 008778 411 MAVGYILMAV---A--------LP-GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLP 469 (554)
Q Consensus 411 ~~~~~~l~~~---~--------~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 469 (554)
.++...++.. . +. +......++.+++.+...+...++..|.+|++++|+.+|+.+...+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 285 QALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 3333332211 1 11 2234455566888888889999999999999999999999887654
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=186.16 Aligned_cols=422 Identities=12% Similarity=0.031 Sum_probs=262.0
Q ss_pred cchhHHHHHHHHHHHhh-ccchhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHH
Q 008778 11 AGKWLGFVTAVWVQAIS-GNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG 88 (554)
Q Consensus 11 ~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~ 88 (554)
+.+|.....+.+-.+.. +-....+...|...+..+.+..|.+.++.....+..+ +..+|.+.|++|||+.+.+.....
T Consensus 74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t 153 (528)
T KOG0253|consen 74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT 153 (528)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence 45566554444333322 3335566778889999999999999999999999876 789999999999999999888888
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhc
Q 008778 89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF 167 (554)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~ 167 (554)
.+..++.+.+ +|+..++++|.+.|.|.|. +|...+.-.+..|. +|++-+-.. ..+.+|.+....+.-..+
T Consensus 154 ~v~~~is~~s-------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm 224 (528)
T KOG0253|consen 154 GVFGVISGAS-------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVM 224 (528)
T ss_pred HHHHHhhcCC-------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHH
Confidence 8877777766 8999999999999999999 66666666677775 687766666 778899988778887777
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHH
Q 008778 168 ADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGIL 247 (554)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (554)
...+|+|.+++..+|..+.....+.++|+|+....++++++...... .++
T Consensus 225 ~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~--kiA---------------------------- 274 (528)
T KOG0253|consen 225 SNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLH--KIA---------------------------- 274 (528)
T ss_pred HhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHH--HHH----------------------------
Confidence 88899999999988888888888888888877544222222111100 000
Q ss_pred HHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHh
Q 008778 248 IILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFE 327 (554)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (554)
+. |+++- |+... +...++..|+ ++++.|....+. .+........
T Consensus 275 ----------------rm-Ng~ql-------------plgvl-~~s~~~~~e~--e~~~~~~~~~~a---~ke~rg~~~n 318 (528)
T KOG0253|consen 275 ----------------RM-NGKQL-------------PLGVL-ESSAIDRQEQ--EESDLDDSKSSA---AKEVRGGTTN 318 (528)
T ss_pred ----------------Hh-cCCCC-------------Cccee-eeehhhhhhh--hhhchhhhhhcc---ccccccchHh
Confidence 00 01110 00000 0000000000 001111000000 0001111122
Q ss_pred hh----hhhhHHHHHHHHHhhhcchhhhhccHHHHHhHh--------------------CCCcch--hhHHHHHHHHhHh
Q 008778 328 AM----WTVDFWILFVSFLCGVGTGLAVMNNMGQIGLAL--------------------GYVDVS--IFVSLTSIWGFFG 381 (554)
Q Consensus 328 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------g~~~~~--~~~~~~~~~~~~g 381 (554)
++ |...+ +++...+.+...++..........|.. .++... .-.....+....|
T Consensus 319 Llsp~lrkttl-llw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPG 397 (528)
T KOG0253|consen 319 LLSPKLRKTTL-LLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPG 397 (528)
T ss_pred hcChHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCc
Confidence 22 11111 111122222222222221111111110 011111 1345667888899
Q ss_pred hHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhH
Q 008778 382 RIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPG-SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLI 460 (554)
Q Consensus 382 ~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~ 460 (554)
.++.+++.||+|||+++ ..+.+++++..+++...... ...+..+..-++..+.+...+.+.+|+||.+.|+++
T Consensus 398 lLIt~~iverlGRKkTM------al~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatg 471 (528)
T KOG0253|consen 398 LLITGVIVERLGRKKTM------ALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATG 471 (528)
T ss_pred hhHHHHHHHHhcchhHH------HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcc
Confidence 99999999999999987 66666666655554433222 233333444456666778888899999999999999
Q ss_pred HHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhhhh
Q 008778 461 YNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNI 532 (554)
Q Consensus 461 ~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~~~ 532 (554)
.|....+..+|+++ .|.++ ...+.. -..+..+.+.+++++.+.+.++..++|.+
T Consensus 472 vGtcSsmaRIggI~-~p~iA-~~~e~s----------------~sl~i~vy~~~~ilagIavcffPiEtkGR 525 (528)
T KOG0253|consen 472 VGTCSSMARIGGIF-SPVIA-MRAELS----------------TSLPIFVYGALFILAGIAVCFFPIETKGR 525 (528)
T ss_pred hhhhhhHHhhhhhh-hhHHH-HHhccc----------------eeehHHHHHHHHHHHHHHheeeeeccCCC
Confidence 99999999999998 89776 433333 24456667778888888888887777653
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-20 Score=190.91 Aligned_cols=412 Identities=12% Similarity=0.059 Sum_probs=245.6
Q ss_pred hhhhhcHHH-HHHh--cCCChhhHHHHHHHHHHHHh-hhhhhhhhccc-CCchHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 008778 31 YTFSNYSDA-LKTL--MNLTQLELNNLSVVKDIGKA-FGLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQP 105 (554)
Q Consensus 31 ~~~~~~~~~-i~~~--~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr-~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~ 105 (554)
|....+.|. +.++ +|++..+.+++.+.+..... ..+++|+++|| +|||+++.++.++.+++.++.+++
T Consensus 27 ~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~------- 99 (475)
T TIGR00924 27 YGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS------- 99 (475)
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc-------
Confidence 333333443 4555 99999999997666666554 58899999999 899999999999999999998877
Q ss_pred chHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC----CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHH
Q 008778 106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR----NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIV 181 (554)
Q Consensus 106 ~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~----~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~ 181 (554)
++++.+++.|++.|+|.|...+.....+++++|+ +|+.+.++...+.++|.++++++.+.+.+..+|++.+..+.+
T Consensus 100 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~ 179 (475)
T TIGR00924 100 IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAV 179 (475)
T ss_pred ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 6788888999999999999989999999999973 388899999999999999988888877776678888877765
Q ss_pred HHHHHHHHHhhccccCC----CCCcchhhhhhhhh-HhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhccc
Q 008778 182 PFVVCLGAIFFLRETTP----ASTVDEEKEEAKYF-SIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVA 256 (554)
Q Consensus 182 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (554)
..++.++..+..++..+ +....++.+...+. .......+....+.. ...... ...............
T Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~---- 251 (475)
T TIGR00924 180 GMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCA-WLMHHV---VIANILLMTVTLAVI---- 251 (475)
T ss_pred HHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHH-HHHhcc---HHHHHHHHHHHHHHH----
Confidence 55555444444332211 11100001111110 000000000000000 000000 000000000000000
Q ss_pred ccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHH
Q 008778 257 IPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWI 336 (554)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (554)
+... ... ++|+. +..+..|...+..
T Consensus 252 ~~~~--~~~--~~~~~---------------------------------------------------~~~~~~~~~~~l~ 276 (475)
T TIGR00924 252 IFFF--RLA--FKPRL---------------------------------------------------DAVARNKMYAYIV 276 (475)
T ss_pred HHHH--HHH--HhccC---------------------------------------------------CHHHHhHHHHHHH
Confidence 0000 000 00000 0001112222333
Q ss_pred HHHHHHhhhcchhhhhccHHHHHhH-hCCC------cchhhHHHHHHHHhHhhHHhhcchhhHhhhcC-CCchhHHHHHH
Q 008778 337 LFVSFLCGVGTGLAVMNNMGQIGLA-LGYV------DVSIFVSLTSIWGFFGRIISGSVSEYFIKRAG-TPRPIWNAASQ 408 (554)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~------~~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~-~~~~~~~~~~~ 408 (554)
+++...+...........++.+.++ .+.+ +.+...++..+.-++..++..++..|.++|.. .....-..++.
T Consensus 277 l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~ 356 (475)
T TIGR00924 277 LFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGM 356 (475)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence 3333333333333334445555443 2221 23345566666666666665555556665422 11222234556
Q ss_pred HHHHHHHHHHHh----------ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhh
Q 008778 409 ILMAVGYILMAV----------ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGL 478 (554)
Q Consensus 409 ~l~~~~~~l~~~----------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~ 478 (554)
++.++++..+.. .+.+.+....++.++|.....+...+++.+..|++.+|+.+|+......+|..+ ++.
T Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l-~~~ 435 (475)
T TIGR00924 357 LFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL-GGY 435 (475)
T ss_pred HHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 666666555432 123356778889999999999999999999999999999999999999999998 787
Q ss_pred HHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHh
Q 008778 479 LAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 479 i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
+.....+..+ +...|...++.+++..++.+++.+.
T Consensus 436 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (475)
T TIGR00924 436 LATFGAVPQG---------------VTGVFGKIGLVTLLVGVVMALMVPW 470 (475)
T ss_pred HHHHHhcccc---------------hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777666544 6777777777776666655554443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=190.20 Aligned_cols=342 Identities=15% Similarity=0.162 Sum_probs=231.6
Q ss_pred HhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhc
Q 008778 42 TLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGN 120 (554)
Q Consensus 42 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gi 120 (554)
++.+-++++++++.....+..+ +.|+.|.+.||+|+|..+++|.+.+.+++++.++. ++|+.+++.|.+||+
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-------~sy~~l~vAR~LQgv 171 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-------NSYPMLFVARSLQGV 171 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-------chhHHHHHHHHHhhh
Confidence 4566677889997777777665 49999999999999999999999999999999998 899999999999999
Q ss_pred hhhHhhhhHHHHHHhhccC--CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008778 121 STTWMNTAVLVTCIRNFRR--NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTP 198 (554)
Q Consensus 121 g~g~~~~~~~~~i~~~fp~--~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (554)
|.+...++..++++|.||+ +|++++|+.-++.++|..+++|+++.+..-.+.+.-|++..+.+++-....+++
T Consensus 172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v----- 246 (464)
T KOG3764|consen 172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV----- 246 (464)
T ss_pred hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe-----
Confidence 9999999999999999985 489999999999999999999998877654444433333322222221111111
Q ss_pred CCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCch
Q 008778 199 ASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVE 278 (554)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (554)
-+|.+.+
T Consensus 247 ---------------------------------------------------------------------i~p~~~~---- 253 (464)
T KOG3764|consen 247 ---------------------------------------------------------------------IEPTEMD---- 253 (464)
T ss_pred ---------------------------------------------------------------------eCccccC----
Confidence 1222200
Q ss_pred hhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHH
Q 008778 279 EQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQI 358 (554)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (554)
+ + ...+...+++++++|..+......-.......+.-..++..
T Consensus 254 ------~--------------~-----------------~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslw 296 (464)
T KOG3764|consen 254 ------P--------------D-----------------STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLW 296 (464)
T ss_pred ------c--------------c-----------------ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHH
Confidence 0 0 00012345899999999887766554444444455566665
Q ss_pred HhH-hCCCc--chhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHH
Q 008778 359 GLA-LGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPG-SLYIGSIIVG 434 (554)
Q Consensus 359 ~~~-~g~~~--~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~l~g 434 (554)
..+ +.-+. ........++...+|..+.|.+.||+++.+. .....+....++.+......+.. .+++..+..+
T Consensus 297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~w----l~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~ 372 (464)
T KOG3764|consen 297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRW----LLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLG 372 (464)
T ss_pred HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhH----HHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHH
Confidence 444 44221 2335556778889999999999999985321 12223333233222223333332 2334444444
Q ss_pred hhhcccccchHHHHHHhhCC------cchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHH
Q 008778 435 LCYGVRLAVTVPTASELFGL------KYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVF 508 (554)
Q Consensus 435 ~~~g~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f 508 (554)
++.+...+...+....+... +.+|..+++......++.++ ||.++|.+++..| |.|..
T Consensus 373 ~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~-GP~~gg~iv~~iG---------------F~wl~ 436 (464)
T KOG3764|consen 373 FGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAI-GPTFGGSLVEAIG---------------FEWLM 436 (464)
T ss_pred HHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhc-cccccchheeehh---------------HHHHH
Confidence 44444444333333333332 26789999999999999999 9999999999997 89988
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008778 509 VIMAMACIVGFGLDILL 525 (554)
Q Consensus 509 ~i~~~~~~~~~~~~~~l 525 (554)
.+.++..++-.-+...+
T Consensus 437 ~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 437 TIIGILNLIYAPVLLLL 453 (464)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888777655544444
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=200.09 Aligned_cols=336 Identities=16% Similarity=0.097 Sum_probs=207.6
Q ss_pred cHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhccc----CCch-HHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 36 YSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDR----IPAP-IILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 36 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr----~G~r-~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
+.+.+.+++|+++.+.+++.+...+...+ .|+.|.++|| +||| +.++.+...++++.+++.+..... .....+
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~-~~~~~~ 100 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFS-ATGKLV 100 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCC-cchHHH
Confidence 55667889999999999977777666654 9999999998 6774 467778888888887776541110 001245
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhcc--CCCccchHhhHhhhhhhHHHHHHHHHhhcC-------CChHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLCSALFA-------DDPAKFLFMLAI 180 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp--~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~-------~~~~~~~~~~~~ 180 (554)
.+++.+++.+++.+...++..+...+..+ ++|+++.++...+..+|..+.+.+...+.. ..+|+..+.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~ 180 (437)
T TIGR00792 101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLA 180 (437)
T ss_pred HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence 56667888888888876666677777763 579999998877766776555444332211 112333322222
Q ss_pred HHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccch
Q 008778 181 VPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVY 260 (554)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (554)
+..++..+..+ ..+
T Consensus 181 ~l~~~~~~~~~-----------------------------------------------------------------~~~- 194 (437)
T TIGR00792 181 LIGVVSLIICF-----------------------------------------------------------------FGT- 194 (437)
T ss_pred HHHHHHHHHHH-----------------------------------------------------------------cCC-
Confidence 22111111100 000
Q ss_pred hhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHH
Q 008778 261 SFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVS 340 (554)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (554)
+++++ +++ +++ + ++.+.....+++++||.++.+.+.
T Consensus 195 -------~e~~~----------~~~--------------~~~-----------~--~~~~~~~~~~~l~~~~~~~~~~~~ 230 (437)
T TIGR00792 195 -------KERYS----------EIP--------------KNI-----------E--KKLSLKQIFKALFKNDQLLILCLA 230 (437)
T ss_pred -------EecCC----------CCC--------------ccc-----------c--cCCCHHHHHHHHhCCHHHHHHHHH
Confidence 11100 000 000 0 000012235678899999887776
Q ss_pred HHhhhcchhhhhccHHHHHhH-hCCCc-chhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHH
Q 008778 341 FLCGVGTGLAVMNNMGQIGLA-LGYVD-VSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILM 418 (554)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~ 418 (554)
.++............+.+.+. .+.+. .....+...++.+++.++.++++||+|+|+.. ..+..+.+++.+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~------~~~~~~~~~~~~~~ 304 (437)
T TIGR00792 231 YLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILF------AGGILLMVLGYLIF 304 (437)
T ss_pred HHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHHHHHHHHHHHHH
Confidence 665544433333333333332 23222 22345566888999999999999999988754 44444455554443
Q ss_pred Hhc--cCchhHHHHHHHHhhhcccccchHHHHHHhhC-------CcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCC
Q 008778 419 AVA--LPGSLYIGSIIVGLCYGVRLAVTVPTASELFG-------LKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQAT 489 (554)
Q Consensus 419 ~~~--~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~ 489 (554)
... +.....+..++.|++.+...+...++.+|..+ +++.|..+|+.+....++..+ ++.+.|.+.|..|-
T Consensus 305 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~l-g~~i~g~ll~~~G~ 383 (437)
T TIGR00792 305 FFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQAL-AGFLVGLILGIIGY 383 (437)
T ss_pred HHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC
Confidence 332 22344556677788888877888888887754 567899999999999999999 89999999998764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=192.88 Aligned_cols=356 Identities=12% Similarity=0.012 Sum_probs=220.3
Q ss_pred HhhccchhhhhcHHHHHHhcCCChhh-HHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhcc
Q 008778 25 AISGNNYTFSNYSDALKTLMNLTQLE-LNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRK 102 (554)
Q Consensus 25 ~~~g~~~~~~~~~~~i~~~~~~s~~~-~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~ 102 (554)
++.-.-...++..|++.+|+|+|.+| .+.+..++..++.+ .++.|++.||+|.|+++.++.+.+++..++.+++
T Consensus 37 F~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa---- 112 (511)
T TIGR00806 37 FMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG---- 112 (511)
T ss_pred HHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH----
Confidence 33344478889999999999999999 89988888888865 8999999999999999999999999999999998
Q ss_pred CCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHH-
Q 008778 103 IQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAI- 180 (554)
Q Consensus 103 ~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~- 180 (554)
++++.+.+.|++.|+++|..+ +...++.+|||+ +|++++|+..++..+|.++++++.+. +...+|+....+..
T Consensus 113 ---~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~I 187 (511)
T TIGR00806 113 ---TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNII 187 (511)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHH
Confidence 899999999999999999999 999999999985 69999999999999999999999888 44556666555543
Q ss_pred --HHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhccccc
Q 008778 181 --VPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIP 258 (554)
Q Consensus 181 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (554)
....++++..+++|.+++...
T Consensus 188 sl~s~~~a~~~a~~LP~~~~sl~--------------------------------------------------------- 210 (511)
T TIGR00806 188 SLVFMTFSVFLALFLKRPKRSLF--------------------------------------------------------- 210 (511)
T ss_pred HHHHHHHHHHHHHhCCCCchhhh---------------------------------------------------------
Confidence 333344444445543322100
Q ss_pred chhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHH
Q 008778 259 VYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILF 338 (554)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (554)
+. +++++......|.+..+| ++. . +..+. .+. .+...-..-..++++..+||....-.
T Consensus 211 -----f~--~~~~~~~~~~~~~~~~~~------~~~--~-~~~~~-~~~-----~~~~~~~~l~~~~~~~y~n~~vl~WS 268 (511)
T TIGR00806 211 -----FN--RLEDVRGALPCELDQMVP------GPG--G-KLEDY-LGT-----CRDSFLVRMLSELVTIYRNPQLLLWS 268 (511)
T ss_pred -----hc--cccccccccccccccCCC------CCc--c-ccchh-hhh-----hhhHHHHHHHHHHHHHhcCcchhhhh
Confidence 00 111100000000000000 000 0 00000 000 00000000112345566676543222
Q ss_pred HHHHhhhcchhhhhccHHHHHhHhCCC-c--chhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHH
Q 008778 339 VSFLCGVGTGLAVMNNMGQIGLALGYV-D--VSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGY 415 (554)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-~--~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~ 415 (554)
+-..+.....+.+.++.....++..-+ + -+..-+...+.+++..+..|++-.+..+ ... ..+.+...+.+..+
T Consensus 269 lWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~-~~~---l~l~v~s~~~~gll 344 (511)
T TIGR00806 269 LWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWAR-WSK---LLIAVVSAIQAGLV 344 (511)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchh-hHH---HHHHHHHHHHHHHh
Confidence 222223333344444444444443221 1 1223345556667788888887555422 111 22233333333333
Q ss_pred HHHHhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhH
Q 008778 416 ILMAVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGS 472 (554)
Q Consensus 416 ~l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 472 (554)
+++... +.+..++..++++..|....++...-++.....+.+|-..|+.+...-+--
T Consensus 345 ~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQ 402 (511)
T TIGR00806 345 FWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALK 402 (511)
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHH
Confidence 333433 345678888899988888888887888888878888998888876544433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.7e-21 Score=199.21 Aligned_cols=380 Identities=15% Similarity=0.107 Sum_probs=249.9
Q ss_pred hhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhh
Q 008778 49 LELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNT 127 (554)
Q Consensus 49 ~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~ 127 (554)
.+.+|+.+...++..+ ++++|+++|++|||++++++.+++.+|.++++++ +++++++++|+++|+|.|....
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-------~~~~~l~~GR~l~G~g~G~~~~ 161 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-------PSWYQLIVGRILTGLGVGGASV 161 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHhccchhhhhh
Confidence 3558888888888865 8999999999999999999999999999999999 8999999999999999999999
Q ss_pred hHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcch
Q 008778 128 AVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD--DPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDE 204 (554)
Q Consensus 128 ~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (554)
....+++|.-|+ .||...++......+|..+ +.+.+....+ .+||..+.++.+++++..+++++++|.|.+....+
T Consensus 162 ~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~-~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g 240 (513)
T KOG0254|consen 162 LAPVYISEIAPAHIRGTLVSLYQLFITIGILL-GYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKG 240 (513)
T ss_pred cchhhHhhcCChhhhHHHHHHHHHHHHHHHHH-HHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcC
Confidence 999999999986 5999999999998877655 4666665554 37999999999999888888777777776543211
Q ss_pred hhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhc
Q 008778 205 EKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVE 284 (554)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (554)
+.++..+.... + +.-.+ +..+.+.+..+
T Consensus 241 ~~~~a~~~l~~-----------------------------------------------l----~g~~~-~~~~~~~~~~~ 268 (513)
T KOG0254|consen 241 RLEEAKRSLKR-----------------------------------------------L----RGLSP-EDVEVELELLK 268 (513)
T ss_pred ChHHHHHHHHH-----------------------------------------------H----hCCCC-cchHHHHHHHH
Confidence 11111110000 0 00000 00000000000
Q ss_pred cccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHH----hhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHh
Q 008778 285 PLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIF----EAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGL 360 (554)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (554)
. +... +..... .....+ +..+++.++...+..+..........++.+++++
T Consensus 269 ~----------------------~~~~-~~~~~~--~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~ 323 (513)
T KOG0254|consen 269 I----------------------KLLV-EAEVAE--GKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFK 323 (513)
T ss_pred H----------------------HHHH-hhhccc--ccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHH
Confidence 0 0000 000000 000111 2233445555666666666666677888999999
Q ss_pred HhCCCcc-hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-----cc----C----chh
Q 008778 361 ALGYVDV-SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-----AL----P----GSL 426 (554)
Q Consensus 361 ~~g~~~~-~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-----~~----~----~~~ 426 (554)
..|.+.. .......++.+.++.+++.++.||+|||+.+ ..+...+.++.+++.. .. . ...
T Consensus 324 ~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~ll------l~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (513)
T KOG0254|consen 324 SAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLL------LFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLA 397 (513)
T ss_pred hcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHH
Confidence 9888754 4455667788888889999999999999865 5555556665554432 11 1 122
Q ss_pred HHHHHHHHhhhccccc-chHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchH
Q 008778 427 YIGSIIVGLCYGVRLA-VTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYR 505 (554)
Q Consensus 427 ~~~~~l~g~~~g~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~ 505 (554)
.+..+++-.++...+. +...+..|.+|.+.|+.+.++....+...+.+. ....-.+.+..+ ..
T Consensus 398 ~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v-~~~~~~~~~~~~---------------~~ 461 (513)
T KOG0254|consen 398 IVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI-SFFFPFITEALG---------------IG 461 (513)
T ss_pred HHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHhcc---------------cc
Confidence 2333333334444444 444577999999999999999999998888763 222222222221 23
Q ss_pred HHHHHHHHHHHHHHH-HHHHhHHhhhhhHHH
Q 008778 506 LVFVIMAMACIVGFG-LDILLAAKTKNIYTK 535 (554)
Q Consensus 506 ~~f~i~~~~~~~~~~-~~~~l~~~~~~~~~~ 535 (554)
..|...+..+.+..+ ..++..+++|.+..+
T Consensus 462 ~~f~~f~~~~~~~~~~fv~~~~pETkg~sle 492 (513)
T KOG0254|consen 462 GTFGYFGGICLLSLIIFVFFFVPETKGLTLE 492 (513)
T ss_pred chHHHHHHHHHHHHHHHheEEcccCCCCcHH
Confidence 456666666666666 667777888876553
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-21 Score=185.47 Aligned_cols=409 Identities=12% Similarity=0.113 Sum_probs=273.8
Q ss_pred ccccchhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHH
Q 008778 8 TSSAGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGS 85 (554)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~ 85 (554)
+..++||.++++..++++..++. ..|+....+....|+ +.+..-|.+..+.+.++ ++.++-++.||+|-|...+++.
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 56789999999999999888887 778888888888899 66666677766666665 5999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCchHH--HHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHH
Q 008778 86 LEGLVGYGAQWLVVSRKIQPLSYW--QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDL 162 (554)
Q Consensus 86 ~l~~~~~~~~~~a~~~~~~~~s~~--~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l 162 (554)
.+.++|..+-..+.....+ +.++ ....+..+.+.++-.....+.....-||| ++|..|..+-..+..+|.+++..+
T Consensus 117 ~ln~iGa~Ir~iss~p~v~-~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVP-PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred HHHHHHHHHhhhccCcccc-ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 9999999998888555444 4566 66678999999999998888899999995 689999999988888988776555
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhH--hHHHHHHHHHHHHHhHhcCCCCcchhh
Q 008778 163 CSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFS--IINTVAIVVALYLQVYDFLPNKSETLA 240 (554)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
...++... + +. .+..|... +....++.. .++
T Consensus 196 ppilV~~~---------------------------~--~~---~~~~~~~~~~f~~~~~l~~--l~l------------- 228 (480)
T KOG2563|consen 196 PPILVPSS---------------------------K--DS---EDNSWLFFTLFLGVECLAA--LLL------------- 228 (480)
T ss_pred cceecCCC---------------------------C--Cc---chhHHHHHHHHHHHHHHHH--HHH-------------
Confidence 44333221 0 00 01111111 111110000 000
Q ss_pred hHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCC
Q 008778 241 LIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLG 320 (554)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (554)
...... +. ++|+. | + +.++ .+.+ +..
T Consensus 229 -------------~l~~~~----~~--~~P~t------------P--p---s~s~-----------------~~~~-~~~ 254 (480)
T KOG2563|consen 229 -------------ALVLFV----FT--KKPPT------------P--P---SASQ-----------------AALQ-DAS 254 (480)
T ss_pred -------------HHHHHh----cC--CCCCC------------C--C---chhH-----------------hhhh-cCc
Confidence 000000 00 22222 1 0 0000 0000 112
Q ss_pred CCchHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCC--cchhhHHHHHHHHhHhhHHhhcchhhHhhhcCC
Q 008778 321 EDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGT 398 (554)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~ 398 (554)
...+.++.++|++|.++++.+....+..+.....+...+...||+ .++.......+.+++|..+.|.+.||.++.+..
T Consensus 255 f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~ 334 (480)
T KOG2563|consen 255 FPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLT 334 (480)
T ss_pred HHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 345678999999999999998888877766666555555556777 455577777888999999999999998765533
Q ss_pred CchhHHHHHHHHHHHH-HHHHHh----ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHH
Q 008778 399 PRPIWNAASQILMAVG-YILMAV----ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSF 473 (554)
Q Consensus 399 ~~~~~~~~~~~l~~~~-~~l~~~----~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 473 (554)
. .+......++ ..+... .+...++....++|++.-+..|+-..+..|..-|..-++..|+.+...++-+.
T Consensus 335 ~-----~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~ 409 (480)
T KOG2563|consen 335 T-----LVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGV 409 (480)
T ss_pred H-----HHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHH
Confidence 1 1111111122 111111 22346778888999988888888888888876677778889999999999888
Q ss_pred HhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHH
Q 008778 474 LFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNIYTKI 536 (554)
Q Consensus 474 l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~~~~~~~ 536 (554)
++ ..+.+...+..+.+. .+...-+.+...++++.++..+++++.||.+.+.
T Consensus 410 ~~-~~~~~~~~~~~~~~~-----------~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e~ 460 (480)
T KOG2563|consen 410 IL-VFIMGILAEDLGPPG-----------NTFPANIFLTVSALLGAILVAFFRPDYRRLRAEA 460 (480)
T ss_pred HH-HHHHHHHhhccCCCC-----------CCccchhHhHHHHHHHHHHHhhhhhhHHhHhhhh
Confidence 84 778887777665321 1344455566667777777777776666555443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-22 Score=181.83 Aligned_cols=360 Identities=15% Similarity=0.099 Sum_probs=230.9
Q ss_pred chhHHHHHHHHHHHhhccchhh-hhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhccc-CCchHHHHHHHHHH
Q 008778 12 GKWLGFVTAVWVQAISGNNYTF-SNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDR-IPAPIILLIGSLEG 88 (554)
Q Consensus 12 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr-~G~r~~~~~g~~l~ 88 (554)
+|...++..+++.+-...+|.- +....++++|.+++.++..++.+.+..-.++ ..+.|++.|| +|.|...++=.+..
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv 120 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV 120 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence 4555555544444333345433 4566778888888888888877777777765 8899999996 78888777666667
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhc
Q 008778 89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF 167 (554)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~ 167 (554)
.+|.++.+.-... +++|.+.++|++.|+|.-....+..+++..||. |+.+.++|+..+..-+|+.+--.+.+.+.
T Consensus 121 ~~GqliFa~Ggi~----~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly 196 (459)
T KOG4686|consen 121 FLGQLIFAAGGIS----HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLY 196 (459)
T ss_pred HHHHHHHHhchHH----HHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHH
Confidence 7777765533222 789999999999999999988888899999996 67999999998888888755322222221
Q ss_pred CCCh----------HHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcc
Q 008778 168 ADDP----------AKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSE 237 (554)
Q Consensus 168 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
+.-. -..+..+....+...+++
T Consensus 197 ~~~~~~~~~~ghT~LG~~l~~~~~tc~~slic------------------------------------------------ 228 (459)
T KOG4686|consen 197 DTMGRMFPGVGHTLLGLWLCFEVKTCKQSLIC------------------------------------------------ 228 (459)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHH------------------------------------------------
Confidence 1100 000111111111111111
Q ss_pred hhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCC
Q 008778 238 TLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRP 317 (554)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (554)
..... +.+ ++.++.-+ .++.+ ..+.|
T Consensus 229 --------------al~lg------~~D--~rAerilh-----~e~g~---------------------------~Ge~p 254 (459)
T KOG4686|consen 229 --------------ALSLG------LSD--DRAERILH-----LEEGF---------------------------LGEEP 254 (459)
T ss_pred --------------HHHhh------hhh--hHHHHHHh-----hhcCc---------------------------ccCCc
Confidence 00000 000 11111000 00000 00001
Q ss_pred CCCCCchHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhh
Q 008778 318 VLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIK 394 (554)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~ 394 (554)
+... ..- -+|.||.+.+..++.......++..-+.++++ +|+++++ .+.+......++-++..|.++||.|+
T Consensus 255 kLtd----v~~-f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~ 329 (459)
T KOG4686|consen 255 KLTD----VNT-FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGF 329 (459)
T ss_pred cccc----ccc-cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcc
Confidence 1000 111 25789998888777766666666666667765 7998643 36666667778889999999999998
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHH
Q 008778 395 RAGTPRPIWNAASQILMAVGYILMAVALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFL 474 (554)
Q Consensus 395 r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l 474 (554)
+... +..+.++..++-..+.+ +...-+..+++.|+.+........+.++.+.|+++.|+++|.....+++|-++
T Consensus 330 n~~w-----v~~a~~~tl~~H~~l~F-t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~ 403 (459)
T KOG4686|consen 330 NLWW-----VASACILTLLGHSGLFF-TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAF 403 (459)
T ss_pred eehh-----HHHHHHHHHHHhhhHHh-hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhH
Confidence 7533 33333333333333332 33345778889999888877778888999999999999999999999999998
Q ss_pred hhhhHHHHHHhccCC
Q 008778 475 FSGLLAGYLYDAQAT 489 (554)
Q Consensus 475 ~~p~i~g~i~~~~~~ 489 (554)
.|+++|.+.|..|.
T Consensus 404 -i~Iiag~i~d~~g~ 417 (459)
T KOG4686|consen 404 -IPIIAGFIADGDGS 417 (459)
T ss_pred -HhhhhheeecCCCc
Confidence 79999999999874
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=206.84 Aligned_cols=137 Identities=15% Similarity=0.041 Sum_probs=113.8
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhc--------
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSR-------- 101 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~-------- 101 (554)
...+...++++++|+++.++.+++.+.+.+++.+ .++.|++.||+|||+++.+|.++++++++++++.-.-
T Consensus 50 g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~ 129 (633)
T TIGR00805 50 GLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYST 129 (633)
T ss_pred HHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccc
Confidence 4556677899999999999999988888888865 8999999999999999999999999999998775200
Q ss_pred ------------------c-C--------------C---CchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccc
Q 008778 102 ------------------K-I--------------Q---PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPV 144 (554)
Q Consensus 102 ------------------~-~--------------~---~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a 144 (554)
. . . ...+..++++|+++|+|.+..++....++.||+|+ +|+++
T Consensus 130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~ 209 (633)
T TIGR00805 130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLY 209 (633)
T ss_pred cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHH
Confidence 0 0 0 01255677899999999999999999999999975 69999
Q ss_pred hHhhHhhhhhhHHHHHHHHHhhc
Q 008778 145 SGILKGYVGLSTAIFTDLCSALF 167 (554)
Q Consensus 145 ~gi~~~~~~lg~~i~~~l~~~l~ 167 (554)
+|+...+..+|.++++.+++.+.
T Consensus 210 ~~i~~~~~~iG~~lG~llgg~l~ 232 (633)
T TIGR00805 210 IGILESIAVFGPAFGYLLGSFCL 232 (633)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999988776666544
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-19 Score=182.06 Aligned_cols=362 Identities=14% Similarity=0.010 Sum_probs=219.0
Q ss_pred HHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHH--HHHHHH-hhhhhh-hhhcccCCchHHHHHHHHHH-HHHHHH
Q 008778 21 VWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSV--VKDIGK-AFGLLA-GLASDRIPAPIILLIGSLEG-LVGYGA 94 (554)
Q Consensus 21 ~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~--~~~~~~-~~~~~~-G~l~dr~G~r~~~~~g~~l~-~~~~~~ 94 (554)
....+..|.. .....+.|.+.+|.|.|.++++.++. ...... +.+|+. ++..||+|||+..+++..+. .+....
T Consensus 7 ~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~ 86 (390)
T TIGR02718 7 GLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLAS 86 (390)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHH
Confidence 3344555665 44556778899999999999999642 223333 347877 55799999999876665332 222222
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHH
Q 008778 95 QWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAK 173 (554)
Q Consensus 95 ~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~ 173 (554)
.+.. .. .......+...-++.++..+...+..-....++.++ +++...+....+..+|..+++.....+.+..+|+
T Consensus 87 ~~~~--~~-~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~ 163 (390)
T TIGR02718 87 LALV--GP-DVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQR 163 (390)
T ss_pred HHcC--Cc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 2211 00 001122223333444455555555555566677754 4677888888887888888776666666666777
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhh
Q 008778 174 FLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLAS 253 (554)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (554)
..+++.....++..+..+++++.
T Consensus 164 ~~f~~~a~l~~~~~~~~~~~~~~--------------------------------------------------------- 186 (390)
T TIGR02718 164 PAFLLVACVPLASLVCVLWLKDR--------------------------------------------------------- 186 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC---------------------------------------------------------
Confidence 76666554443333222111110
Q ss_pred cccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhh
Q 008778 254 PVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVD 333 (554)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (554)
++++ +++ + .++..+.++.+|+|.
T Consensus 187 ---------------~~~~----------~~~----------------~----------------~~~~~~~~~~l~~~~ 209 (390)
T TIGR02718 187 ---------------AVAS----------PEA----------------P----------------LARRASLFRFFRRPL 209 (390)
T ss_pred ---------------CcCc----------ccc----------------c----------------hhhHHHHHHHHcCcC
Confidence 0000 000 0 001123467888898
Q ss_pred HHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcchh--hHHHHH-HHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHH
Q 008778 334 FWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSI--FVSLTS-IWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQIL 410 (554)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~-~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l 410 (554)
+|......++..........+.+++.++.|+++... .....+ ....++.++.|++.||+++|+.. ..+..+
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l------~~~~~~ 283 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTF------ILGVGL 283 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH------HHHHHH
Confidence 887766666555544455566778888899986543 333443 46677889999999999988754 222222
Q ss_pred HHHHH-HHHHhcc----Cc--hhHHHHHHHHhhhcccccchHHHHHHhhCC-cchhhHHHHHHhhhhhhHHHhhhhHHHH
Q 008778 411 MAVGY-ILMAVAL----PG--SLYIGSIIVGLCYGVRLAVTVPTASELFGL-KYYGLIYNILILNLPLGSFLFSGLLAGY 482 (554)
Q Consensus 411 ~~~~~-~l~~~~~----~~--~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~l~~p~i~g~ 482 (554)
.++.. ....... +. ..+....+.+++.|...+...+...+..++ +++++.+++.+...+++..+ +|.+.|.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~-g~~~~G~ 362 (390)
T TIGR02718 284 AGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELI-ASSIAGY 362 (390)
T ss_pred HHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 21111 1111111 11 122233344556677667666776677666 78999999999999999999 8999999
Q ss_pred HHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHH
Q 008778 483 LYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGL 521 (554)
Q Consensus 483 i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~ 521 (554)
++|..| |+..|.+.+++.+++.++
T Consensus 363 l~~~~G---------------~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 363 LTDRFG---------------YAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHc---------------cHHHHHHHHHHHHHHHHH
Confidence 999886 889998888777666543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-21 Score=183.51 Aligned_cols=403 Identities=14% Similarity=0.041 Sum_probs=238.0
Q ss_pred hhhhhcHHHHHHhc-C-------CChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhc
Q 008778 31 YTFSNYSDALKTLM-N-------LTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSR 101 (554)
Q Consensus 31 ~~~~~~~~~i~~~~-~-------~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~ 101 (554)
+.++...|-+...+ | +++.-.+.+.....+|.++ +++.|++.||+|||+++...++++.++++++++....
T Consensus 58 F~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~ 137 (538)
T KOG0252|consen 58 FSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGT 137 (538)
T ss_pred hhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCC
Confidence 56777777665432 3 3344455577788889887 8999999999999999999999999999988777554
Q ss_pred cCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhc---C----C----
Q 008778 102 KIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF---A----D---- 169 (554)
Q Consensus 102 ~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~---~----~---- 169 (554)
..+..-.+.++.+|++.|+|.|.-||.+..+.+|.-.+ +||.-.+...+..++|.+.++++...+. . .
T Consensus 138 ~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~ 217 (538)
T KOG0252|consen 138 TSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTY 217 (538)
T ss_pred CCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCc
Confidence 33223356788899999999999999999999999864 6999999998888887655544432221 0 0
Q ss_pred ----ChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHH
Q 008778 170 ----DPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSG 245 (554)
Q Consensus 170 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (554)
..||..+.++.+|++..+.-=+.++|++.+...
T Consensus 218 ~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al------------------------------------------- 254 (538)
T KOG0252|consen 218 PHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTAL------------------------------------------- 254 (538)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHH-------------------------------------------
Confidence 125555555544444433322222222111000
Q ss_pred HHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchH
Q 008778 246 ILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTI 325 (554)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (554)
.. ++++. .. .+.++++.. +.++++. ++ ....+.+.....+
T Consensus 255 ------------------~~--~~~~~-a~----~d~~k~~~~--------~~~~~~~-~~------~~~~~~~~~~~~F 294 (538)
T KOG0252|consen 255 ------------------VS--KKLKQ-AA----GDMKKVLSV--------DIEAEST-AE------SDVPPPSNSFGLF 294 (538)
T ss_pred ------------------hh--cCHhh-hh----hcccccccc--------ccchhhc-cc------cCCCCcccccchH
Confidence 00 00000 00 000000000 0000000 00 0000111111122
Q ss_pred HhhhhhhhHHH---HHHHHHhhhcchhhhhccHHHHHhHhCCCcchh----------hHHHHH-HHHhHhhHHhhcchhh
Q 008778 326 FEAMWTVDFWI---LFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSI----------FVSLTS-IWGFFGRIISGSVSEY 391 (554)
Q Consensus 326 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----------~~~~~~-~~~~~g~~~~G~l~Dr 391 (554)
.+.+..+.... .+..-|+.-...+....+...+++..|+.++.. .-.+.. .+...|-.+...++|+
T Consensus 295 ~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~ 374 (538)
T KOG0252|consen 295 SRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI 374 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh
Confidence 23332222122 222333333344455556677888777754221 112222 2333366778899999
Q ss_pred HhhhcCCCchhHHHHHHHHHHHHHHHHHhccC-----chhHHHHHHHHhh-hcccccchHHHHHHhhCCcchhhHHHHHH
Q 008778 392 FIKRAGTPRPIWNAASQILMAVGYILMAVALP-----GSLYIGSIIVGLC-YGVRLAVTVPTASELFGLKYYGLIYNILI 465 (554)
Q Consensus 392 ~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~-----~~~~~~~~l~g~~-~g~~~~~~~~~~~~~~~~~~~g~~~g~~~ 465 (554)
+||++.. ..++.++++..+.+..... ....+...+..++ .-+..+....+.+|.||.+.||+..|+..
T Consensus 375 iGRk~iq------~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsA 448 (538)
T KOG0252|consen 375 IGRKYIQ------LMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISA 448 (538)
T ss_pred hhhHHHH------HhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHH
Confidence 9999866 6667767666655543211 1223333333332 22234466677899999999999999999
Q ss_pred hhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhhhhHH
Q 008778 466 LNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNIYT 534 (554)
Q Consensus 466 ~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~~~~~ 534 (554)
..+-+|+++ +.....++.++.-.+ ..+++++|++.+.++.++.+..+++. +++++..
T Consensus 449 A~GK~GAiv-g~~~F~~~t~~~yp~----------~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~l 505 (538)
T KOG0252|consen 449 ASGKAGAIV-GAFGFLYLTDHNYPP----------NIGVRNVFIILAGCMLLGILFTLLIP-ETKGKSL 505 (538)
T ss_pred HhccchHHH-HHHHhhHhhhccCCc----------cccchHHHHHHHHHHHHhHheeEEee-cccccCH
Confidence 999999998 887877777733111 12379999999999999988877776 7766554
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-18 Score=182.42 Aligned_cols=415 Identities=12% Similarity=0.097 Sum_probs=230.6
Q ss_pred hhhhh-cHHHHHHhcCCChhhHHHHHHHHHHHH-hhhhhhhhhccc-CCchHHHHHHHHHHHHHHHHHHHHhhccCCCch
Q 008778 31 YTFSN-YSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLS 107 (554)
Q Consensus 31 ~~~~~-~~~~i~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~dr-~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s 107 (554)
|.+.. ...++++++|++.++.+++...+.... ...+++|++.|| +|||++++.+.+++++++.+++++ . ++
T Consensus 38 y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~--~----~~ 111 (500)
T PRK09584 38 YGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS--G----HD 111 (500)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh--c----cc
Confidence 44444 334567899999999888654444333 346799999999 599999999999999999888775 1 34
Q ss_pred HHHHHHHHHHHhchhhHhhhhHHHHHHhhccCC---CccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 008778 108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN---RGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV 184 (554)
Q Consensus 108 ~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~~---rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ 184 (554)
.+.+++.|+++|+|.|...+.....+.++||++ |+.+.++...+.++|+.+++.+.+.+.+..+|++.|..+.+...
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~ 191 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGML 191 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 566778899999999998888889999999742 45688888889999998888888888777789988888876555
Q ss_pred HHHHHHhhcccc-CCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhh
Q 008778 185 VCLGAIFFLRET-TPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFI 263 (554)
Q Consensus 185 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (554)
+.++..++.+.. ++.....++...++.........+...++...... .+. +.... ...+..+.. ... +.
T Consensus 192 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~-~~~~~~~~~--~~~-~~---- 261 (500)
T PRK09584 192 ITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLL-HNQ-EIARM-ALGVVALGI--VVI-FG---- 261 (500)
T ss_pred HHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHH-hcc-hHHHH-HHHHHHHHH--HHH-HH----
Confidence 554443332221 11110100000111111111111111111110000 000 00000 000000000 000 00
Q ss_pred hhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHh
Q 008778 264 KSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLC 343 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (554)
++..+ . .+.-+++. +.....+ +
T Consensus 262 ----~~~~~---------------------------------------------~-------~~~~~~~~-~~~~~~~-~ 283 (500)
T PRK09584 262 ----KEAFA---------------------------------------------M-------KGAARRKM-IVAFILM-L 283 (500)
T ss_pred ----HHHhh---------------------------------------------c-------CHHHHHHH-HHHHHHH-H
Confidence 00000 0 00001111 1111111 1
Q ss_pred hhcchhhhhccHHHHHh----H------hCCC-cchhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHH
Q 008778 344 GVGTGLAVMNNMGQIGL----A------LGYV-DVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMA 412 (554)
Q Consensus 344 ~~~~~~~~~~~~~~~~~----~------~g~~-~~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~ 412 (554)
....++......+.... + .|+. +.+...++..+..++..++.+++-+|.++|.. ......++.++++
T Consensus 284 ~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~--~~~~~~~G~~l~~ 361 (500)
T PRK09584 284 EAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLP--MPHKFAIGMVLCS 361 (500)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCC--cHHHHHHHHHHHH
Confidence 11111222222222221 1 1222 23335556666666777777666677766642 2334456677777
Q ss_pred HHHHHHHhcc----------CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHH
Q 008778 413 VGYILMAVAL----------PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGY 482 (554)
Q Consensus 413 ~~~~l~~~~~----------~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~ 482 (554)
++++.+.... .+.+....++.+++.+...+...+++.+..|++.+|..+|+......+++.+ +..+.+.
T Consensus 362 l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~-~g~~~~~ 440 (500)
T PRK09584 362 GAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALI-AGYVANL 440 (500)
T ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 7776643311 1256677888999999999999999999999999999999888777777776 4445443
Q ss_pred HHhccCCCCCCCCccccc-ccchHHHHHHHHHHHHHHHHHHHHhHHh
Q 008778 483 LYDAQATPTAGGGNTCVG-AHCYRLVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 483 i~~~~~~~~~~~~~~~~~-~~~~~~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
....... ..... ...|.+.|...++.+++..++.+.+.+.
T Consensus 441 ~~~~~~~------~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~ 481 (500)
T PRK09584 441 MAVPDNV------TDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPK 481 (500)
T ss_pred hcccccc------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2210000 00000 1127788888887776555544444333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-19 Score=185.69 Aligned_cols=356 Identities=14% Similarity=0.091 Sum_probs=236.8
Q ss_pred hcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 008778 35 NYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV 113 (554)
Q Consensus 35 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~ 113 (554)
+..+.+..+..-|+..++.+.....+..+ +++++|.+.||+.||++++.+-++..+..+..++...... .++|.+++
T Consensus 31 va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~--~~~~~Ll~ 108 (524)
T PF05977_consen 31 VALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGL--LSPWLLLI 108 (524)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCc--CCHHHHHH
Confidence 34455666677788888888777777775 5999999999999999999999887766665554322211 47899999
Q ss_pred HHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhh
Q 008778 114 FLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192 (554)
Q Consensus 114 ~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (554)
.-++.|++.+...|+-.+++.+..|+ +...+.++.....+++-.++|.+++.++...+-.+.|.+..+..++.+.....
T Consensus 109 ~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~ 188 (524)
T PF05977_consen 109 LTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLR 188 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999986 57899999999989888887777776655444444444443333222221111
Q ss_pred ccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCC
Q 008778 193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKR 272 (554)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (554)
+ +.+.+
T Consensus 189 ~--------------------------------------------------------------------------~~~~~ 194 (524)
T PF05977_consen 189 W--------------------------------------------------------------------------KPPPP 194 (524)
T ss_pred c--------------------------------------------------------------------------ccccc
Confidence 1 11100
Q ss_pred CCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchhhhh
Q 008778 273 TEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVM 352 (554)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (554)
. ++.+ +| + ....-...++-+.++|......+..++.......+.
T Consensus 195 -~-------~~~~-------------------~e-------~--~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~ 238 (524)
T PF05977_consen 195 -P-------SSLP-------------------RE-------R--FFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVW 238 (524)
T ss_pred -c-------cccc-------------------hh-------h--hhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHH
Confidence 0 0000 00 0 000001122334445554443333222222222334
Q ss_pred ccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCchhHH
Q 008778 353 NNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGSLYI 428 (554)
Q Consensus 353 ~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~ 428 (554)
..+|.+.++ +|.++. +...+..+++.++|.++.+++.+|+++++.+ ..+.++.+++.+.+... +.+...+
T Consensus 239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv------~~~~~~~a~~~~~lal~~~~~~~~~ 312 (524)
T PF05977_consen 239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLV------LLASLLFALALLLLALSPSFWLALI 312 (524)
T ss_pred HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhh------HHHHHHHHHHHHHHhcchHHHHHHH
Confidence 456777654 566544 3477788888888888888887777665443 44555555555555543 3345566
Q ss_pred HHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHH
Q 008778 429 GSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVF 508 (554)
Q Consensus 429 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f 508 (554)
..++.|++.........+.+.+..|++.+|++.++..+....+..+ |..+.|.+.|..+ .+.++
T Consensus 313 ~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~l-Gsll~G~la~~~g---------------~~~al 376 (524)
T PF05977_consen 313 ALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPL-GSLLWGFLADHFG---------------VRTAL 376 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC---------------HHHHH
Confidence 7778888888777788889999999999999999999999888888 8999999999987 67778
Q ss_pred HHHHHHHHHHHHHHHH
Q 008778 509 VIMAMACIVGFGLDIL 524 (554)
Q Consensus 509 ~i~~~~~~~~~~~~~~ 524 (554)
.+.++..+++.++...
T Consensus 377 ~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 377 LIAGAALLLSALIALR 392 (524)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666555554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-25 Score=231.79 Aligned_cols=374 Identities=15% Similarity=0.127 Sum_probs=240.7
Q ss_pred hHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCc---hHHHHHHHHHHHhchhhHh
Q 008778 50 ELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPL---SYWQMCVFLCMGGNSTTWM 125 (554)
Q Consensus 50 ~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~---s~~~l~~~r~l~Gig~g~~ 125 (554)
+.++..+...++..+ +++.|.+.||+|||+++.++.++..++.++.+++ + +++.++++|+++|++.|..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA-------PSYNNFWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc-------ccccccccccccccccccccccc
Confidence 456677777788866 8999999999999999999999999999999988 6 8999999999999999999
Q ss_pred hhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcC---CChHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008778 126 NTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA---DDPAKFLFMLAIVPFVVCLGAIFFLRETTPAST 201 (554)
Q Consensus 126 ~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (554)
.+....++.|..| ++|++..++...+..+|..++..+...... ++.|+..+.++.++.++.++..++++|+|++..
T Consensus 120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~ 199 (451)
T PF00083_consen 120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLL 199 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceec
Confidence 9999999999997 469999999999988887665444433322 245999999999888877777788888888764
Q ss_pred cchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhh
Q 008778 202 VDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQ 281 (554)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (554)
.+++.++..+.... + ++.++
T Consensus 200 ~~~~~~~A~~~l~~-----------------------------------------------~----~~~~~--------- 219 (451)
T PF00083_consen 200 SKGRDEEAEKVLRK-----------------------------------------------L----RGKEI--------- 219 (451)
T ss_pred cccccccccccccc-----------------------------------------------c----ccccc---------
Confidence 42211111100000 0 00000
Q ss_pred hhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhh-----HHHHHHHHHhhhcchhhhhccHH
Q 008778 282 VVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVD-----FWILFVSFLCGVGTGLAVMNNMG 356 (554)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 356 (554)
.++ +.+++.+ +.++.+ +.+.+++++++++. +..+.+..+..........++.+
T Consensus 220 ~~~------------~~~~~~~---------~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 277 (451)
T PF00083_consen 220 EDE------------EIEEIKA---------EKKESQ-ESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSP 277 (451)
T ss_pred ccc------------ccccccc---------cccccc-ccceeeeecccccccccccccccccccccccccccccccccc
Confidence 000 0000000 000000 00133455555533 11111122222222223444556
Q ss_pred HHHhHhCCCcchhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHH-----h-cc----Cchh
Q 008778 357 QIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMA-----V-AL----PGSL 426 (554)
Q Consensus 357 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~-----~-~~----~~~~ 426 (554)
.+.+..|.++.........+...++.+++.++.||+|||+.. ..+..++++....+. . .. ....
T Consensus 278 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T PF00083_consen 278 SIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLL------IIGLLLMAICSLILGIIFFLGVSSSSWWSILS 351 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccc
Confidence 666667776553333455566777888888999999999765 333333333333221 1 11 1122
Q ss_pred HHHHHHHHhhhccc-ccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchH
Q 008778 427 YIGSIIVGLCYGVR-LAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYR 505 (554)
Q Consensus 427 ~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~ 505 (554)
.+..++...+++.. .+....+..|.+|.+.|+++.|+....+.+++++ +|.+...+.+..+ ..
T Consensus 352 i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i-~~~~~~~~~~~~~---------------~~ 415 (451)
T PF00083_consen 352 IVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFI-IPFLFPYLFNNLG---------------GW 415 (451)
T ss_pred ceeeeeccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc---------------cc
Confidence 22333333344433 3455577899999999999999999999999998 7888777776664 24
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhhHH
Q 008778 506 LVFVIMAMACIVGFGLDILLAAKTKNIYT 534 (554)
Q Consensus 506 ~~f~i~~~~~~~~~~~~~~l~~~~~~~~~ 534 (554)
..+.+.+++++++.+..+++.+|+|.+..
T Consensus 416 ~~~~i~~~~~~i~~i~~~~~lpET~g~~l 444 (451)
T PF00083_consen 416 GVFLIFAGVCLIAIIFVYFFLPETKGKTL 444 (451)
T ss_pred ccchhhHHHHHHHHhheeEEEeeCCCCCH
Confidence 56777777777777777777888877554
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.3e-19 Score=185.99 Aligned_cols=382 Identities=15% Similarity=0.087 Sum_probs=235.1
Q ss_pred HhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhc
Q 008778 42 TLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGN 120 (554)
Q Consensus 42 ~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gi 120 (554)
+.++.+.....+..+.+.+|..+ .++.|.++||+|||++++.+.++..++.++.+++ +|++.+++.|+++|+
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------~~~~~~~~~Rfl~G~ 183 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------PNYWMFLIFRFLSGF 183 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------CcHHHHHHHHHHHHh
Confidence 56677777777778888888876 7799999999999999999999999999999999 899999999999999
Q ss_pred hhhHhhhhHHHHHHhhc-cCCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008778 121 STTWMNTAVLVTCIRNF-RRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPA 199 (554)
Q Consensus 121 g~g~~~~~~~~~i~~~f-p~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (554)
+.+..+.....++.|++ |++|+.+..+ ......++.+.++..+.+.. .||+.++...++..+.++..++.+|.|++
T Consensus 184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rw 260 (521)
T KOG0255|consen 184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRW 260 (521)
T ss_pred hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHH
Confidence 99999999999999999 5679999999 55556666677777777766 78888888888877776665555566655
Q ss_pred CCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchh
Q 008778 200 STVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEE 279 (554)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (554)
...+++.++..+.... . .+..+..
T Consensus 261 l~~~g~~~~a~~~l~~--~-------------------------------------------------a~~n~~~----- 284 (521)
T KOG0255|consen 261 LLSKGRIDEAIKILKK--I-------------------------------------------------AKLNGRK----- 284 (521)
T ss_pred HHHcCchHHHHHHHHH--H-------------------------------------------------HhhcCCC-----
Confidence 4331111111100000 0 0000000
Q ss_pred hhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHH
Q 008778 280 QQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIG 359 (554)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (554)
. +..+. .+.....+.++....++...+.++++.|++....+...+.........+-+....
T Consensus 285 ---~---------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~ 345 (521)
T KOG0255|consen 285 ---L---------------SVKEL-LRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNV 345 (521)
T ss_pred ---C---------------CcHHH-HHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhh
Confidence 0 00000 0000000011111111234567788887533332222222211111122222233
Q ss_pred hHhCCCcchhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhcc--Cc--hhHHHHHHHHh
Q 008778 360 LALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVAL--PG--SLYIGSIIVGL 435 (554)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~--~~~~~~~l~g~ 435 (554)
..+|.+.. ......+.....+....+...|++|||... ..+..+..++++...... .. ...+...+..+
T Consensus 346 ~~lg~~~~-~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (521)
T KOG0255|consen 346 SGLGGNIY-LNFTLSGLVELPAYFRNGLLLPEFGRRPPL------FLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKF 418 (521)
T ss_pred hhcCchHH-HHHHHHHHHHhhHHHHHHHHHHHhCcHHHH------HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 33443321 122233335666667778999999888654 555555566655544322 11 23333344445
Q ss_pred hhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHH
Q 008778 436 CYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMAC 515 (554)
Q Consensus 436 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~ 515 (554)
+.+..+........|++|...|..+.+.......+++++ +|.+.-...... ....+.+.+...
T Consensus 419 ~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~-ap~~~~~~~~~~----------------~~~~~~~~~~~~ 481 (521)
T KOG0255|consen 419 FIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSIL-APLFPLLLRQMF----------------PLLGLILFGWLA 481 (521)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc----------------ccchHHHHHHHH
Confidence 566666677889999999999999999999999999998 786654433322 122233345455
Q ss_pred HHHHHHHHHhHHhhhhh
Q 008778 516 IVGFGLDILLAAKTKNI 532 (554)
Q Consensus 516 ~~~~~~~~~l~~~~~~~ 532 (554)
.+..++...+.++++..
T Consensus 482 ~l~~~~~~~~lpet~~~ 498 (521)
T KOG0255|consen 482 LLLGLLSLLLLPETKGK 498 (521)
T ss_pred HHHHHHHHhcCcccCCC
Confidence 55555554555666543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-18 Score=176.03 Aligned_cols=340 Identities=11% Similarity=0.090 Sum_probs=192.8
Q ss_pred cHHHHHHhcCCChhhHHHHHHHHHHHH-hhhhhhhhhccc----CCc-hHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 36 YSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDR----IPA-PIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 36 ~~~~i~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~dr----~G~-r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
..+.+.+++|++..+++.+.+...+.. +..|+.|.++|| +|| |+.++.+....+++..+....... ......+
T Consensus 32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~-~~~~~~~ 110 (444)
T PRK09669 32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDF-GATGKII 110 (444)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCC-CcchHHH
Confidence 345578899999999999766555555 459999999999 776 455667777777776655443110 0012345
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhcc--CCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL 187 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp--~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 187 (554)
.+++..++.+++......+..+...++.+ ++|++..++-..+..+|..+.+.+...+...
T Consensus 111 ~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~------------------ 172 (444)
T PRK09669 111 YACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDI------------------ 172 (444)
T ss_pred HHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 56666666676766666666677888885 5688887777766666665544332211100
Q ss_pred HHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcc
Q 008778 188 GAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN 267 (554)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (554)
+.. . ....+++........+. .+.... .....
T Consensus 173 -----~~~---~-----~~~~g~~~~~~i~~ii~--------------------------~v~~~~-~~~~~-------- 204 (444)
T PRK09669 173 -----LGK---G-----DEQKGYFYAMMVMGLLG--------------------------VVLFFC-CFFMT-------- 204 (444)
T ss_pred -----hCC---C-----chhhhHHHHHHHHHHHH--------------------------HHHHHH-HhCCe--------
Confidence 000 0 00011111110000000 000000 00000
Q ss_pred cccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcc
Q 008778 268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT 347 (554)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (554)
+++.+ + + ++ ++.+...+.+++++||.++.+.+..++....
T Consensus 205 ~e~~~------------~-----~-------~~----------------~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~ 244 (444)
T PRK09669 205 KERYT------------P-----E-------VD----------------NSSSVWKDLKLLLGNSQWRIMFIFNVVLLTA 244 (444)
T ss_pred EEecC------------C-----C-------Cc----------------CCCCHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 11111 0 0 00 0000123457788999988877665544332
Q ss_pred hhhhhccHHHHHhHh--CCCcch-hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHH-HHHHHHh--c
Q 008778 348 GLAVMNNMGQIGLAL--GYVDVS-IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAV-GYILMAV--A 421 (554)
Q Consensus 348 ~~~~~~~~~~~~~~~--g~~~~~-~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~-~~~l~~~--~ 421 (554)
... ......++.+. +.++.. .......+..+++.++.++++||+|+|+.. ..+..+.++ ...+... .
T Consensus 245 ~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~------~~~~~~~~~~~~~~~~~~~~ 317 (444)
T PRK09669 245 VVT-RGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAF------KWTIVAFVILSALIFFIPPS 317 (444)
T ss_pred HHH-HhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH------HHHHHHHHHHHHHHHHhCcc
Confidence 221 12222333222 222222 233445577778889999999999988754 333322222 2212222 2
Q ss_pred cCchhHHHHHHHHhhhcccccchHHHHHHhhC-------CcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCC
Q 008778 422 LPGSLYIGSIIVGLCYGVRLAVTVPTASELFG-------LKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATP 490 (554)
Q Consensus 422 ~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~ 490 (554)
+...+++..++.|++.+...+...++++|..+ ++..|..+|.......+|..+ |+.+.|.+.|..|-+
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~al-g~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAI-GGAVVGWILAWVDYV 392 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCC
Confidence 22345666778899998888888889888874 445677889999999999999 999999999988754
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-16 Score=159.93 Aligned_cols=156 Identities=12% Similarity=0.048 Sum_probs=115.4
Q ss_pred hhhhhcHHH-HHHhcCCChhhHHHHHHHHHHHH-hhhhhhhhhcccC-CchHHHHHHHHHHHHHHHHHHHHhhccCCCch
Q 008778 31 YTFSNYSDA-LKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRI-PAPIILLIGSLEGLVGYGAQWLVVSRKIQPLS 107 (554)
Q Consensus 31 ~~~~~~~~~-i~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~dr~-G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s 107 (554)
|....+.|. +.+++|++..+.+.+...+.... ...+++|+++||+ |||+++++|.++..++.++++.. . .+
T Consensus 26 Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~--~----~~ 99 (493)
T PRK15462 26 YGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS--E----IH 99 (493)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh--h----cc
Confidence 555555554 46779999999999766555554 4588999999999 99999999999999998776543 0 12
Q ss_pred HHHHHHHHHHHhchhhHhhhhHHHHHHhhccC---CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 008778 108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR---NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV 184 (554)
Q Consensus 108 ~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~---~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ 184 (554)
...+.+...+.++|.|...+...+.+.|.||+ +|..+.++...+.++|+.+++.+.+.+.+..+|++.|..+.+..+
T Consensus 100 ~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~ 179 (493)
T PRK15462 100 PSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMI 179 (493)
T ss_pred hhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHH
Confidence 23334444444566666666677889999974 589999999999999998888888887777788888888776555
Q ss_pred HHHHHHhh
Q 008778 185 VCLGAIFF 192 (554)
Q Consensus 185 ~~~~~~~~ 192 (554)
+.++..+.
T Consensus 180 l~li~~~~ 187 (493)
T PRK15462 180 AGLVIFLC 187 (493)
T ss_pred HHHHHHHH
Confidence 55554443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-16 Score=156.66 Aligned_cols=186 Identities=18% Similarity=0.187 Sum_probs=129.7
Q ss_pred hHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhHhC-CCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCc
Q 008778 324 TIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALG-YVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPR 400 (554)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~ 400 (554)
+..+++|+|++..+.+..++.......+..+.+.+.++.| ++.. ....++..+..++.-+..+++..|+|.|+.+
T Consensus 199 ~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll-- 276 (400)
T PF03825_consen 199 DALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLL-- 276 (400)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--
Confidence 3468999999988777766666666666777888899987 5533 3345566677777777888888888877644
Q ss_pred hhHHHHHHHHHHHHHHHHHhc-cCc-hhHHH----HHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhh-hhhhHH
Q 008778 401 PIWNAASQILMAVGYILMAVA-LPG-SLYIG----SIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILN-LPLGSF 473 (554)
Q Consensus 401 ~~~~~~~~~l~~~~~~l~~~~-~~~-~~~~~----~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~ 473 (554)
.++.+..++=+.++... ++. ...+. ..+.|++++..+.....++.+..|++.++++.|+.... .++|+.
T Consensus 277 ----~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~ 352 (400)
T PF03825_consen 277 ----LLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGA 352 (400)
T ss_pred ----HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHH
Confidence 45555454445555443 332 22222 23578899988888889999999999999999998865 689999
Q ss_pred HhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 474 LFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 474 l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
+ |..++|+++|+.+.+. .-.|...+.+.+++.++..++.+.+
T Consensus 353 i-G~~igG~l~~~~g~~~---------~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 353 I-GSLIGGWLYDAFGARG---------MFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred H-HHHHHHHHHHHhcchh---------hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 8 8999999999987421 0124455666666655555554444
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-17 Score=171.52 Aligned_cols=362 Identities=15% Similarity=0.078 Sum_probs=217.8
Q ss_pred HHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhhhhhhhhhcccCC-----chHHHHHHHHHHH-HH
Q 008778 19 TAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIP-----APIILLIGSLEGL-VG 91 (554)
Q Consensus 19 ~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~dr~G-----~r~~~~~g~~l~~-~~ 91 (554)
......++.|.. .......|.+++++|+|.++++.+.+...+...+.+++|+++||++ ||+.++++.++.. ++
T Consensus 30 ~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~ 109 (468)
T TIGR00788 30 IGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAIL 109 (468)
T ss_pred HHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHH
Confidence 333344555655 3344556677888999999998887777788888888999999998 7777777776653 33
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccCCCcc---chHhhHhhhhhhHHHHHHHHHhhcC
Q 008778 92 YGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGP---VSGILKGYVGLSTAIFTDLCSALFA 168 (554)
Q Consensus 92 ~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~~rg~---a~gi~~~~~~lg~~i~~~l~~~l~~ 168 (554)
.. .++... ++.....+..++.+++.+....+.-....|..++++.. +.+......++|.++++.+.+.+.+
T Consensus 110 ~~--~l~~~~----~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~ 183 (468)
T TIGR00788 110 YG--LLPGKV----SSAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLD 183 (468)
T ss_pred HH--hccccc----chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222111 22333344788999999999999999999999844433 3333334445788777777777766
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHH
Q 008778 169 DDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILI 248 (554)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (554)
..+|+..++......++..+..++++|.+...
T Consensus 184 ~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~------------------------------------------------ 215 (468)
T TIGR00788 184 KTLTRILFLITAALLLLQLFVSNLSKERRAFV------------------------------------------------ 215 (468)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHhcccccccc------------------------------------------------
Confidence 66777777666555544443333333321000
Q ss_pred HHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhh
Q 008778 249 ILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEA 328 (554)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (554)
+|+. . +++. ..... .+....+..+ ....+.++.
T Consensus 216 --------------------~~~~-~-------~~~~-------------~~~~~-~~~~~~~~~~-----~~~~~l~~~ 248 (468)
T TIGR00788 216 --------------------RPRI-G-------TYLE-------------MNMAL-LTLGVLANVK-----VQILGLRGA 248 (468)
T ss_pred --------------------cccc-c-------ccch-------------hhhhh-hhhhHHHHHH-----HHHHHHHHH
Confidence 0000 0 0000 00000 0000000000 001133556
Q ss_pred hhhhhHHHHHHHHHh-h-hcchhhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHH
Q 008778 329 MWTVDFWILFVSFLC-G-VGTGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWN 404 (554)
Q Consensus 329 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~ 404 (554)
+++|..|...+..++ . .........++ ...+.+|+++.. ......+++.++|....+++.+|++.|+..
T Consensus 249 l~~~~i~~~l~fifl~~~~~~~~~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l------ 321 (468)
T TIGR00788 249 IQLLEIAKPLIFIFLSYANLPGASGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLF------ 321 (468)
T ss_pred HhcHHHHHHHHHHHHHHhhcCCCCceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHH------
Confidence 778888764444333 2 11111111111 111346777643 355666777888888888777777766543
Q ss_pred HHHHHHHHHHHHHHH-----h------ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHH
Q 008778 405 AASQILMAVGYILMA-----V------ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSF 473 (554)
Q Consensus 405 ~~~~~l~~~~~~l~~-----~------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 473 (554)
..+.++.+++.+... . ..........++.+++.+..+.....++.+..|+++.|+.+++.+...++|..
T Consensus 322 ~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~ 401 (468)
T TIGR00788 322 GVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSS 401 (468)
T ss_pred HHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHH
Confidence 444444444442211 0 11123345567788888888888889999999999999999999999999999
Q ss_pred HhhhhHHHHHHhccCC
Q 008778 474 LFSGLLAGYLYDAQAT 489 (554)
Q Consensus 474 l~~p~i~g~i~~~~~~ 489 (554)
+ ++.++|.+.+..|.
T Consensus 402 v-~~~~gg~l~~~~g~ 416 (468)
T TIGR00788 402 V-SGFLGVLLMETIGI 416 (468)
T ss_pred H-HHHHHHHHHHHcCC
Confidence 9 89999999998873
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.4e-17 Score=167.84 Aligned_cols=341 Identities=11% Similarity=0.031 Sum_probs=190.3
Q ss_pred cHHHHHHhcCCChhhHHHHHHHHHHHH-hhhhhhhhhcc----cCCc-hHHHHHHHHHHHHHHHHHHHHhhccCCC-chH
Q 008778 36 YSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASD----RIPA-PIILLIGSLEGLVGYGAQWLVVSRKIQP-LSY 108 (554)
Q Consensus 36 ~~~~i~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~d----r~G~-r~~~~~g~~l~~~~~~~~~~a~~~~~~~-~s~ 108 (554)
+...+.+.+|++..+++.+....-+.- +..|+.|.++| |+|| |+.++.+....+++..++... ...++ ..+
T Consensus 29 l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~--p~~~~~~~~ 106 (473)
T PRK10429 29 LMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA--HLFEGTAQY 106 (473)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC--CCCCccHHH
Confidence 344567788999999999655444444 55999999999 6698 666777877777776665332 11110 124
Q ss_pred HHHHHHHHHHhchhhHhhhhHHHHHHhhcc--CCCccchHhhHhhhhhhHHHHHHHHHhhc---CC-ChHHHHHHHHHHH
Q 008778 109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLCSALF---AD-DPAKFLFMLAIVP 182 (554)
Q Consensus 109 ~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp--~~rg~a~gi~~~~~~lg~~i~~~l~~~l~---~~-~~~~~~~~~~~~~ 182 (554)
+.+++..++.+++......+..+...+.-+ ++|.+..++-..+..+|+.+.+.+...++ .. +....+...+.+.
T Consensus 107 ~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~ 186 (473)
T PRK10429 107 VFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVL 186 (473)
T ss_pred HHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 445555667777777777777777888774 56998888855555555444433222111 10 0000011111111
Q ss_pred HHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhh
Q 008778 183 FVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSF 262 (554)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (554)
+++.++. ........+
T Consensus 187 ~~~~~~~--------------------------------------------------------------~~~~~~~~~-- 202 (473)
T PRK10429 187 IAFFIVS--------------------------------------------------------------TIITLRNVH-- 202 (473)
T ss_pred HHHHHHH--------------------------------------------------------------HHHHHcCce--
Confidence 1100000 000000000
Q ss_pred hhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHH
Q 008778 263 IKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFL 342 (554)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (554)
+++++ . +.++ +++++.+....++.+++|+.++.+.+..+
T Consensus 203 -----e~~~~-~-------~~~~----------------------------~~~~~~~~~~~~~~~~~n~~~~~ll~~~~ 241 (473)
T PRK10429 203 -----EVYSS-D-------NQVS----------------------------AEGSHLTLKDIVALIYKNDQLSCLLGMAL 241 (473)
T ss_pred -----ecCCc-c-------cccc----------------------------ccccCCCHHHHHHHHhcCHHHHHHHHHHH
Confidence 11100 0 0000 00000011223456678888887766665
Q ss_pred hhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHH-
Q 008778 343 CGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMA- 419 (554)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~- 419 (554)
+............+.+.+....++. ....+...+..+++.++.+++.||+|+|+.. ..+..+.+++.+.+.
T Consensus 242 ~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~------~~~~~~~~~~~~~~~~ 315 (473)
T PRK10429 242 AYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILW------AGASIFPVLSCGVLLL 315 (473)
T ss_pred HHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH------HHHHHHHHHHHHHHHH
Confidence 5444333332222323332222221 2244455678889999999999999998764 333333333322221
Q ss_pred ---h-cc-CchhHHHHHHHHhhhcccccchHHHHHHhhC-------CcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhcc
Q 008778 420 ---V-AL-PGSLYIGSIIVGLCYGVRLAVTVPTASELFG-------LKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQ 487 (554)
Q Consensus 420 ---~-~~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~ 487 (554)
. .+ ...+.+..++.|++.+...+..+++.+|..+ .+..|..+|.......++..+ ++.+.|.+.+..
T Consensus 316 ~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al-~~~i~g~~l~~~ 394 (473)
T PRK10429 316 MGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAF-AAFFIGVVLGLI 394 (473)
T ss_pred HhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence 1 12 2244556667788888888888888888844 455677999999999999999 899999999988
Q ss_pred CCC
Q 008778 488 ATP 490 (554)
Q Consensus 488 ~~~ 490 (554)
|-+
T Consensus 395 Gy~ 397 (473)
T PRK10429 395 GYV 397 (473)
T ss_pred CCC
Confidence 743
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=165.72 Aligned_cols=159 Identities=13% Similarity=0.140 Sum_probs=109.3
Q ss_pred hHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcchh-h-HHHHHHHHhHhhHHhhcchhhHhhhcCCCc
Q 008778 324 TIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDVSI-F-VSLTSIWGFFGRIISGSVSEYFIKRAGTPR 400 (554)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~-~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~ 400 (554)
.++++++||.++...+..++............+.+.++ +|.++... . .....+...++.++.+++.||+++|+.+
T Consensus 220 ~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~-- 297 (448)
T PRK09848 220 SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTF-- 297 (448)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH--
Confidence 35778999999888777666555444444445555554 45544322 2 2233456778899999999999988754
Q ss_pred hhHHHHHHHHHHHHHHHHHhcc---CchhHHHHHHHHhhhcccccchHHHHHHhhCCc-------chhhHHHHHHhhhhh
Q 008778 401 PIWNAASQILMAVGYILMAVAL---PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLK-------YYGLIYNILILNLPL 470 (554)
Q Consensus 401 ~~~~~~~~~l~~~~~~l~~~~~---~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~ 470 (554)
..+..+.+++.+.+.... .+...+..++.|++.+...+...++.+|..+.+ +.|..+|+.+..+.+
T Consensus 298 ----~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~kl 373 (448)
T PRK09848 298 ----LIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKC 373 (448)
T ss_pred ----HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHH
Confidence 445555555554443321 223445566788888888887778887776543 469999999999999
Q ss_pred hHHHhhhhHHHHHHhccCC
Q 008778 471 GSFLFSGLLAGYLYDAQAT 489 (554)
Q Consensus 471 g~~l~~p~i~g~i~~~~~~ 489 (554)
|..+ ++.+.|.+.+..|.
T Consensus 374 g~ai-g~~i~g~~l~~~G~ 391 (448)
T PRK09848 374 GQAI-GGSIPAFILGLSGY 391 (448)
T ss_pred HHHH-HHHHHHHHHHHcCC
Confidence 9999 89999999888764
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.7e-16 Score=158.54 Aligned_cols=183 Identities=16% Similarity=0.244 Sum_probs=140.6
Q ss_pred chHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHh-HhCCCcchh--hHHHHHHHHhHhhHHhhcchhhHhhh--cC
Q 008778 323 HTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGL-ALGYVDVSI--FVSLTSIWGFFGRIISGSVSEYFIKR--AG 397 (554)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~--~~~~~~~~~~~g~~~~G~l~Dr~g~r--~~ 397 (554)
.+++++.++|....+.++.++..-....++.....+.+ ++|+++.+. ......+.+++|.++.|++.||+|.| +.
T Consensus 272 ~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~ 351 (477)
T PF11700_consen 272 RTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRT 351 (477)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence 35577778888888888877665555555566666665 589987654 55566889999999999999999998 33
Q ss_pred CCchhHHHHHHHHH-HHHHHHHH--------hccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhh
Q 008778 398 TPRPIWNAASQILM-AVGYILMA--------VALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNL 468 (554)
Q Consensus 398 ~~~~~~~~~~~~l~-~~~~~l~~--------~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 468 (554)
+ ..+.++. .+...-+. ..+.+.+++..++.|++.|...+..-++.+++.|+++.+.-+|+.....
T Consensus 352 l------~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~g 425 (477)
T PF11700_consen 352 L------LISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITG 425 (477)
T ss_pred H------HHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 2 2222222 12221111 2345577888889999999999999999999999999999999999999
Q ss_pred hhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhH
Q 008778 469 PLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 469 ~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~ 526 (554)
...+.+ ||.+.|.+.|.+++ .+.++....++.++++++..+..
T Consensus 426 k~ss~l-GPll~g~i~~~tg~--------------~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 426 KASSWL-GPLLFGLITDATGS--------------QRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred HHHHHH-HHHHHHHHHHHhCC--------------chhHHHHHHHHHHHHHHHHhhcc
Confidence 999999 99999999999985 78899988888888888765543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-16 Score=154.12 Aligned_cols=184 Identities=13% Similarity=0.136 Sum_probs=130.7
Q ss_pred hHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCc----c--hhhHHHHHHHHhHhhHHhhcchhhHhhhcC
Q 008778 324 TIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVD----V--SIFVSLTSIWGFFGRIISGSVSEYFIKRAG 397 (554)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~ 397 (554)
+..+++|+|++|.+.+........+..+-...+.|.+.+--++ . +...+.--+..++...+..++.+|+|.|+.
T Consensus 212 ~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~ 291 (412)
T PF01306_consen 212 DVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNL 291 (412)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhH
Confidence 4578999999998877655444444444444556665543222 1 124556667788888899999999999986
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHH-HhhhhhhHHHh
Q 008778 398 TPRPIWNAASQILMAVGYILMAVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNIL-ILNLPLGSFLF 475 (554)
Q Consensus 398 ~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~l~ 475 (554)
+ .++..++.+=....... +++.+...-.+-++-++.......-++++.+++|..++.+.+. +...+++..+
T Consensus 292 L------llag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i- 364 (412)
T PF01306_consen 292 L------LLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIII- 364 (412)
T ss_dssp H------HHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHH-
T ss_pred H------HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHH-
Confidence 5 55555555545554443 4455666777888888777777888999999999999999986 5678999998
Q ss_pred hhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhh
Q 008778 476 SGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKT 529 (554)
Q Consensus 476 ~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~ 529 (554)
.+.+.|.++|+.| ++.+|++++.+.+...++..+..+++
T Consensus 365 ~s~~~G~lyd~~G---------------~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 365 LSPLAGYLYDRIG---------------FQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HhhhHHhhHhhcC---------------cHHHHHHHHHHHHHHHHHheeeecCC
Confidence 5779999999997 89999999988887777777765444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-15 Score=155.05 Aligned_cols=388 Identities=12% Similarity=-0.009 Sum_probs=210.8
Q ss_pred cHHHHHHhcCCChhhHHHHHHHHHHHH-hhhhhhhhhcc----cCCchHHHHHH-HHHHHHHHHHHHHHhhcc------C
Q 008778 36 YSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASD----RIPAPIILLIG-SLEGLVGYGAQWLVVSRK------I 103 (554)
Q Consensus 36 ~~~~i~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~d----r~G~r~~~~~g-~~l~~~~~~~~~~a~~~~------~ 103 (554)
+.+.+.+++|.+..+.+++.....+.. +.+|+.|.++| |+|||+.++++ .....++.++.+++.... .
T Consensus 26 ~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~ 105 (477)
T TIGR01301 26 LLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNL 105 (477)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccc
Confidence 334567889999999999655555554 56999999999 59999998875 566666666666541100 0
Q ss_pred CCch----HHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CC--ccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHH
Q 008778 104 QPLS----YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NR--GPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLF 176 (554)
Q Consensus 104 ~~~s----~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~r--g~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~ 176 (554)
...+ .+.+.++-.+..++.....++..+.+.|.+|+ +| +.+.++.....++|..++..+++..-...
T Consensus 106 ~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~------ 179 (477)
T TIGR01301 106 DKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYK------ 179 (477)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------
Confidence 0000 02223333344557777777888899999974 33 68999998888999877655543210000
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhccc
Q 008778 177 MLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVA 256 (554)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (554)
.++..... ..+......+..+..... ++++......
T Consensus 180 ---------------~~~~~~~~--~~~~~~~~~~~~F~i~a~---------------------------~l~i~~l~t~ 215 (477)
T TIGR01301 180 ---------------IFPFTKTE--ACGVSCANLKSCFLIDII---------------------------LLAILTYIAL 215 (477)
T ss_pred ---------------hccccccc--ccccccchHHHHHHHHHH---------------------------HHHHHHHHHe
Confidence 00000000 000001111211111100 0000000011
Q ss_pred ccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhh---h--h
Q 008778 257 IPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAM---W--T 331 (554)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~ 331 (554)
+.++ ++|.. ..++.+.++. ++.+ + . .....+++++ + -
T Consensus 216 ~~v~-------E~~~~-~~~~~~~~~~---------------~~~~-----------~--~--~~~~~~~~i~~~~~~mP 257 (477)
T TIGR01301 216 SAVK-------ENPLI-GSDDFINSEA---------------APPS-----------K--H--GEEAFFGELFGAFKYLP 257 (477)
T ss_pred eeee-------ccCCC-ccccchhhhc---------------cccc-----------c--c--chhhhHHHHHHHHHHCC
Confidence 1111 11100 0000000000 0000 0 0 0001112222 2 2
Q ss_pred hhHHHHHHHHHhhhcchhhhhccHHHHH-hH-hCCCc--------c---h-hhHHHHHHHHhHhhHHhhcchhhHhhhcC
Q 008778 332 VDFWILFVSFLCGVGTGLAVMNNMGQIG-LA-LGYVD--------V---S-IFVSLTSIWGFFGRIISGSVSEYFIKRAG 397 (554)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~--------~---~-~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~ 397 (554)
+.+|.+++..++.....+.+..+.+++. ++ ++.++ . . .....+++.+.+.+++.-++.+|+|+|+.
T Consensus 258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~ 337 (477)
T TIGR01301 258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKR 337 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 4578888877776666555555555554 33 33221 1 1 12333444444555555666666664322
Q ss_pred CCchhHHHHHHHHHHHHHHHHHh-cc------C---------------chhHHHHHHHHhhhcccccchHHHHHHhhCC-
Q 008778 398 TPRPIWNAASQILMAVGYILMAV-AL------P---------------GSLYIGSIIVGLCYGVRLAVTVPTASELFGL- 454 (554)
Q Consensus 398 ~~~~~~~~~~~~l~~~~~~l~~~-~~------~---------------~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~- 454 (554)
...++.++.++++..... ++ + ....+.+.++|+.++..++...+++++..++
T Consensus 338 -----~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~ 412 (477)
T TIGR01301 338 -----LWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNL 412 (477)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcccc
Confidence 224454455555444321 11 1 3345677788999998888899999999884
Q ss_pred -cchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 008778 455 -KYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTK 530 (554)
Q Consensus 455 -~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~ 530 (554)
++.|..+|+.|....+.-.+ ..+..|.+.+..+++ -.+.+.+.++..+++.++.+++.++.+
T Consensus 413 ~~~~G~~mgilN~~I~lpQii-~sl~~g~~~~~~g~~-------------~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 413 GAGQGLSMGVLNLAIVIPQII-VSLGSGPWDQLFGGG-------------NLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred CCCCcchhhHHHHHHHHHHHH-HHHHHHHHHHHcCCC-------------CeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 56799999999999888888 566777767766642 456888888888999888888776654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-17 Score=152.32 Aligned_cols=333 Identities=13% Similarity=0.074 Sum_probs=191.7
Q ss_pred hHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhh
Q 008778 50 ELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTA 128 (554)
Q Consensus 50 ~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~ 128 (554)
-.+.+.+.+.+.-.+ ++.+|.++||+|||+++++|++..++.+.+.+.+ .|+..+.+.|++.|+.-|... .
T Consensus 69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S-------~~F~afv~aR~l~Gi~kgnl~-v 140 (451)
T KOG2615|consen 69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS-------RNFAAFVLARFLGGIFKGNLS-V 140 (451)
T ss_pred hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhccCchH-H
Confidence 344566666666654 8999999999999999999999999999998888 788455556999999988874 7
Q ss_pred HHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcC---CChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcch
Q 008778 129 VLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA---DDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDE 204 (554)
Q Consensus 129 ~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (554)
..++++|.++ |+|+++++.....+++|-+++|.+++.+.. ..+.-..++.+.+..+......
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v-------------- 206 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDV-------------- 206 (451)
T ss_pred HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHH--------------
Confidence 7789999996 579999999999999998766555554422 1111111111111111111000
Q ss_pred hhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhc
Q 008778 205 EKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVE 284 (554)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (554)
..... +.||.-+.++.+ ++..
T Consensus 207 ------------------------------------------------~~~~~----------~lpETL~~rk~~-~~~~ 227 (451)
T KOG2615|consen 207 ------------------------------------------------TFFPW----------FLPETLPLRKRN-DEHS 227 (451)
T ss_pred ------------------------------------------------HHHHH----------hCCccccchhhc-cccc
Confidence 00000 112110000000 0000
Q ss_pred cccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhH------H-HHHHHHHhhhcchhhhhccHHH
Q 008778 285 PLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDF------W-ILFVSFLCGVGTGLAVMNNMGQ 357 (554)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~ 357 (554)
++.+. .+ ++....+.+ ...-...+||++- | .+.+..+.+...+..+-++...
T Consensus 228 ~~~~~---------~~-----~~~~~~~~~-------~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~ 286 (451)
T KOG2615|consen 228 TLQEA---------AD-----DRLALLKFA-------RIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLF 286 (451)
T ss_pred chhhh---------hh-----hhhhhcchh-------hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 00000 00 000000000 0000111222211 1 1112222222222222233333
Q ss_pred HH-hHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHH
Q 008778 358 IG-LALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-ALPGSLYIGSIIV 433 (554)
Q Consensus 358 ~~-~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~l~ 433 (554)
+. +.+|+++. ....+..++.+++.+.......||.+..- ...+.....++.-.++++.. ..+..++....+.
T Consensus 287 l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~----~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~ 362 (451)
T KOG2615|consen 287 LTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNI----KAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLK 362 (451)
T ss_pred hhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccch----hhHHHHHHHHHHHHHHHHhccccchhhhHHHHHH
Confidence 32 45788753 33666777777777777777777754211 11123333334344444443 3455677788888
Q ss_pred HhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCC
Q 008778 434 GLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQAT 489 (554)
Q Consensus 434 g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~ 489 (554)
.+.....-+....++....|++++|++.|+......++=++ ||.+.|.+..+...
T Consensus 363 sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRai-GPlv~g~i~~Ws~~ 417 (451)
T KOG2615|consen 363 SFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAI-GPLVSGVIFSWSQG 417 (451)
T ss_pred HHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHh-hhhhhheeEEEecC
Confidence 88777777778888899999999999999999999999999 99999998887753
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-16 Score=161.57 Aligned_cols=337 Identities=15% Similarity=0.135 Sum_probs=216.2
Q ss_pred cHHHHHHhcCCChhhHHHHHHHHHHHH-hhhhhhhhhcc----cCCchHH-HHHHHHHHHHHHHHHHHH-hhccCCCchH
Q 008778 36 YSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASD----RIPAPII-LLIGSLEGLVGYGAQWLV-VSRKIQPLSY 108 (554)
Q Consensus 36 ~~~~i~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~d----r~G~r~~-~~~g~~l~~~~~~~~~~a-~~~~~~~~s~ 108 (554)
+.+.+.+.+|+++...+.+....-+.. +..|+.|.++| |+|||+. ++.|..+.+++..++... ..+.......
T Consensus 24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~ 103 (428)
T PF13347_consen 24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL 103 (428)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence 445667888999999999655554444 45999999999 8997665 556778888877776544 1111101123
Q ss_pred HHHHHHHHHHhchhhHhhhhHHHHHHhhcc--CCCccchHhhHhhhhhhHHHHHHHHHhhcCC---C----hHHHHHHHH
Q 008778 109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLCSALFAD---D----PAKFLFMLA 179 (554)
Q Consensus 109 ~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp--~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~---~----~~~~~~~~~ 179 (554)
..+++..++..++......+..+...+..+ ++|.+..+.-..+..+|..+.+.+...+.+. . +|+....+.
T Consensus 104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~ 183 (428)
T PF13347_consen 104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVL 183 (428)
T ss_pred HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHH
Confidence 344566666688888888777888899986 4699999888777777765444443333211 0 111111111
Q ss_pred HHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccc
Q 008778 180 IVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPV 259 (554)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (554)
.+...+..+ .....+
T Consensus 184 ~iv~~v~~~-----------------------------------------------------------------i~~~~~ 198 (428)
T PF13347_consen 184 AIVGLVFFL-----------------------------------------------------------------ITFFFV 198 (428)
T ss_pred HHHHHHHhh-----------------------------------------------------------------hhhhee
Confidence 100000000 000000
Q ss_pred hhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHH
Q 008778 260 YSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFV 339 (554)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (554)
+++++ ++ ++++++.+.....+++++||.++.+..
T Consensus 199 --------ke~~~-----------~~---------------------------~~~~~~~~~~~~~~~~~~nr~~~~l~~ 232 (428)
T PF13347_consen 199 --------KERSV-----------EV---------------------------TEQEKKISLRDSLRSLFRNRPFRILLL 232 (428)
T ss_pred --------eeccc-----------cc---------------------------cccccccccccchhhhcccchHHHHHH
Confidence 11000 00 000011123345688999999988888
Q ss_pred HHHhhhcchhhhhccHHHHHhH-hCCCc-chhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHH
Q 008778 340 SFLCGVGTGLAVMNNMGQIGLA-LGYVD-VSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYIL 417 (554)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l 417 (554)
..++............+.+.+. .|.++ .+.......+...++.++.++++||+|+|+.+ ..+..+.+++.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~------~~~~~~~~~~~~~ 306 (428)
T PF13347_consen 233 AFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVY------IIGLLLAALGFLL 306 (428)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeeh------hhhHHHHHHHHHH
Confidence 8776655554444455555555 45543 33455677888999999999999999999876 5555555555444
Q ss_pred HHh---ccCchhHHHHHHHHhhhcccccchHHHHHHhhC-------CcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhcc
Q 008778 418 MAV---ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFG-------LKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQ 487 (554)
Q Consensus 418 ~~~---~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~ 487 (554)
+.. .+.+.+++..++.|++.+..+....++.+|..+ +++.|..+|..+....++..+ ++.+.+.+.+..
T Consensus 307 ~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~l-a~~i~g~~l~~~ 385 (428)
T PF13347_consen 307 LFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGL-AGAIVGLLLALV 385 (428)
T ss_pred HHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHH-HHHHHHHHHHHh
Confidence 332 355677888899999999988888888888765 456799999999999999999 899999999887
Q ss_pred CCC
Q 008778 488 ATP 490 (554)
Q Consensus 488 ~~~ 490 (554)
|-+
T Consensus 386 Gy~ 388 (428)
T PF13347_consen 386 GYD 388 (428)
T ss_pred CcC
Confidence 643
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-16 Score=151.40 Aligned_cols=279 Identities=13% Similarity=0.026 Sum_probs=178.4
Q ss_pred chHHHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 008778 106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV 184 (554)
Q Consensus 106 ~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ 184 (554)
++|+.+++.-++.|.|.+...+....++++..| |++.+.+++.++.+++|..++|.+.+.++...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~-------------- 73 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSG-------------- 73 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--------------
Confidence 689999999999999999999999999999986 46899999999999999988777776554210
Q ss_pred HHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhh
Q 008778 185 VCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIK 264 (554)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (554)
..+........+.....|++.++....+...+.. ++. +
T Consensus 74 --------~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i------------------------------~~~----~ 111 (310)
T TIGR01272 74 --------AGDLSMQVATANAEAAKVHTPYLLLAGALAVLAI------------------------------IFA----F 111 (310)
T ss_pred --------CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH------------------------------HHH----H
Confidence 0000000000000112333333222111100000 000 0
Q ss_pred hcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhh
Q 008778 265 SWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCG 344 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (554)
. +.|+. .++ +++ +.+ ++ +....++.+++|.+++..+.++++
T Consensus 112 ~--~~p~~-~~~-----~~~---------------~~~----------~~------~~~~~~~~~~~~~~~l~~~~~f~y 152 (310)
T TIGR01272 112 L--PLPEL-QEA-----DVA---------------RVS----------SG------DTTQKTSAFQFTHLVLGALGIFVY 152 (310)
T ss_pred c--cCCCC-Ccc-----ccc---------------ccc----------cc------cccchhhHHhhHHHHHHHHHHHHH
Confidence 0 22221 000 000 000 00 000113567888999888888888
Q ss_pred hcchhhhhccHHHHHhH---hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHH
Q 008778 345 VGTGLAVMNNMGQIGLA---LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMA 419 (554)
Q Consensus 345 ~~~~~~~~~~~~~~~~~---~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~ 419 (554)
.+.......|.+.|.++ +|+++. +...+.+..+..+||++.+++.||+++|+.. ..+..+.+++.++..
T Consensus 153 vg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l------~~~~~l~~~~~~l~~ 226 (310)
T TIGR01272 153 VGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYL------AFNAFLAVLLSIGAA 226 (310)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH------HHHHHHHHHHHHHHH
Confidence 88888888899999875 367643 3477888899999999999999999987644 333333444433333
Q ss_pred hccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccC
Q 008778 420 VALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQA 488 (554)
Q Consensus 420 ~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~ 488 (554)
..+.........++|++.+..+|...+...+.+| ++.+++.++. ....+|+++ .|.+.|.+.|..+
T Consensus 227 ~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~-~~~~~Gg~i-~P~l~G~lad~~g 292 (310)
T TIGR01272 227 LTHGYVAMWFVLALGLFNSIMFPTIFSLALNALG-RHTSQGSGIL-CLAIVGGAI-VPLLQGSLADCLG 292 (310)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHH-HHHHhcchH-HHHHHHHHHHhcc
Confidence 3233333446668899999999988888888886 4567777775 567789998 7999999999876
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-14 Score=150.72 Aligned_cols=338 Identities=11% Similarity=0.024 Sum_probs=181.4
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHH-hhhhhhhhhccc----CCchH-HHHHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 008778 38 DALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDR----IPAPI-ILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM 111 (554)
Q Consensus 38 ~~i~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~dr----~G~r~-~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l 111 (554)
..+.+.+|+++..++++....-+-- +..|+.|.++|| +|||+ .++.|...++++.+++.... ..........+
T Consensus 34 ~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p-~~s~~~~~~y~ 112 (460)
T PRK11462 34 FFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP-DLSMNGKMIYA 112 (460)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC-CCCcchHHHHH
Confidence 3457789999999999654444444 458999999996 68754 55667778888777655431 10001113344
Q ss_pred HHHHHHHhchhhHhhhhHHHHHHhhcc--CCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 008778 112 CVFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGA 189 (554)
Q Consensus 112 ~~~r~l~Gig~g~~~~~~~~~i~~~fp--~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 189 (554)
++..++..++......+-.+...+.-+ ++|.+..++-..+..+|..+.+.+...++.. .
T Consensus 113 ~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~------------------~- 173 (460)
T PRK11462 113 AITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNL------------------I- 173 (460)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------h-
Confidence 555666678888877777777788775 4799999988877666665543332211100 0
Q ss_pred HhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccc
Q 008778 190 IFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLN 269 (554)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (554)
. .. +....+.........+ .+++.. +.+ . ..
T Consensus 174 -------g---~~--~~~~g~~~~~~i~~ii---------------------------~~i~~~-i~~------~---~~ 204 (460)
T PRK11462 174 -------G---GD--NKPLGFQGGIAVLSVV---------------------------AFMMLA-FCF------F---TT 204 (460)
T ss_pred -------C---CC--chhhhHHHHHHHHHHH---------------------------HHHHHH-HHH------h---cc
Confidence 0 00 0000111100000000 000000 000 0 01
Q ss_pred cCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchh
Q 008778 270 RKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGL 349 (554)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (554)
+|+ .++ ++ ++.+.....+.+++|+.++.+....++......
T Consensus 205 kE~----------~~~-------------~~----------------~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~ 245 (460)
T PRK11462 205 KER----------VEA-------------PP----------------TTTSMREDLRDIWQNDQWRIVGLLTIFNILAVC 245 (460)
T ss_pred eec----------cCC-------------Cc----------------cCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 111 000 00 000012234677888888766555443333222
Q ss_pred hhhccHHHHHhH-hCCCcc-hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhcc--Cch
Q 008778 350 AVMNNMGQIGLA-LGYVDV-SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVAL--PGS 425 (554)
Q Consensus 350 ~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~ 425 (554)
........+.+. .|.++. ....+...+.+++|.++++++.||+++|+.. ............++...+. ...
T Consensus 246 ~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 320 (460)
T PRK11462 246 VRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIF-----WWTNALLAVISLAMFFVPMQASIT 320 (460)
T ss_pred HHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHHHHHHhchhHHHH
Confidence 222222222222 233222 2355667788899999999999999987643 1111111111222222222 223
Q ss_pred hHHHHHHHHhhhcccccchHHHHHHhhC-------CcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCC
Q 008778 426 LYIGSIIVGLCYGVRLAVTVPTASELFG-------LKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQAT 489 (554)
Q Consensus 426 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~ 489 (554)
.++..++.|++.+...+...++.+|..+ .++-|..++.......+|..+ ++.+.|.+.+..|-
T Consensus 321 ~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~al-g~~i~g~iL~~~Gy 390 (460)
T PRK11462 321 MFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAF-GGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC
Confidence 3444556677666655555666766654 455566677777889999998 89999999987664
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7e-14 Score=135.33 Aligned_cols=181 Identities=15% Similarity=0.199 Sum_probs=136.6
Q ss_pred hHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHh-HhCCCcchh--hHHHHHHHHhHhhHHhhcchhhHhhhcCCCc
Q 008778 324 TIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGL-ALGYVDVSI--FVSLTSIWGFFGRIISGSVSEYFIKRAGTPR 400 (554)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~--~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~ 400 (554)
+++++.+++....+.++.++..-...........+.. ++|.++.+. ......+..++|.++.|++.||+|.|+.+
T Consensus 244 t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl-- 321 (438)
T COG2270 244 TFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVL-- 321 (438)
T ss_pred HHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceee--
Confidence 5567777776666666655444333344445555665 688887655 44566888999999999999999999765
Q ss_pred hhHHHHHHHHHHHHHHHH-HhccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhH
Q 008778 401 PIWNAASQILMAVGYILM-AVALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLL 479 (554)
Q Consensus 401 ~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i 479 (554)
..+.++..+..+.. ....+..+++...++|++.|...+..=++..+.+|+++-++.+|+.+......+++ ||..
T Consensus 322 ----~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~-gp~l 396 (438)
T COG2270 322 ----MIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFL-GPFL 396 (438)
T ss_pred ----hHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHH-HHHH
Confidence 45555444444333 33345567777789999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 480 AGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 480 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
.+.+.|.+++ -+..+....++.+++++.....
T Consensus 397 v~v~t~iTg~--------------~r~g~~~i~vll~iGl~~L~~v 428 (438)
T COG2270 397 VAVITQITGS--------------SRAGVLSIIVLLLIGLLLLLRV 428 (438)
T ss_pred HHHHHHHhcc--------------hhhHHHHHHHHHHhhHhhEEee
Confidence 9999999986 5777777777777776654443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-13 Score=134.87 Aligned_cols=380 Identities=15% Similarity=0.126 Sum_probs=220.8
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHH-hhhhhhhhhccc----CCc-hHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 008778 39 ALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDR----IPA-PIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC 112 (554)
Q Consensus 39 ~i~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~dr----~G~-r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~ 112 (554)
.+.+.+|+++...+.+..+.-+-- +.-|+.|.+.|| +|| |+-++.+.+.+++.+.++..+..... ..+....+
T Consensus 38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~-~~k~~ya~ 116 (467)
T COG2211 38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSM-TGKLIYAL 116 (467)
T ss_pred HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCccc-CcchHHHH
Confidence 357789999999998655544444 448999999996 675 55677777888888888776632111 13455566
Q ss_pred HHHHHHhchhhHhhhhHHHHHHhhcc--CCCccchHhhHhhhhhhHHHHHHH----HHhhcCCChHHHHHHHHHHHHHHH
Q 008778 113 VFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDL----CSALFADDPAKFLFMLAIVPFVVC 186 (554)
Q Consensus 113 ~~r~l~Gig~g~~~~~~~~~i~~~fp--~~rg~a~gi~~~~~~lg~~i~~~l----~~~l~~~~~~~~~~~~~~~~~~~~ 186 (554)
+...+.+++...+..+--+...+..+ ++|.+..+.-..+..+|.++...+ ...+-+++....+....++.+++.
T Consensus 117 vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~ 196 (467)
T COG2211 117 VTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIG 196 (467)
T ss_pred HHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHH
Confidence 67888899999988777777888884 579888888877777765554332 222222221111111111111111
Q ss_pred HHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhc
Q 008778 187 LGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSW 266 (554)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (554)
.+..+ .+ ..-+
T Consensus 197 ~i~~l----------------------------------------------------------~~----~~~v------- 207 (467)
T COG2211 197 VILLL----------------------------------------------------------FC----FFNV------- 207 (467)
T ss_pred HHHHH----------------------------------------------------------HH----HHHh-------
Confidence 11100 00 0000
Q ss_pred ccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhc
Q 008778 267 NLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVG 346 (554)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (554)
+++.. +.++ .+...+.+...++..+++|+.+..+.+..++...
T Consensus 208 -~ER~~---------~~~~---------------------------~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~ 250 (467)
T COG2211 208 -KERVV---------ETQP---------------------------TKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFI 250 (467)
T ss_pred -hcccC---------cccc---------------------------CcccccccHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 11100 0000 0000111122344568899988887776655544
Q ss_pred chhhhhccHHHHHhH--hCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-c
Q 008778 347 TGLAVMNNMGQIGLA--LGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-A 421 (554)
Q Consensus 347 ~~~~~~~~~~~~~~~--~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-~ 421 (554)
... +......|+.+ +|.++.. ........+.+++.++..++.+|+|+|+.. ..+.++.+++.+.+.. +
T Consensus 251 ~~~-i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~------~~~~~~~~i~~~~~~f~~ 323 (467)
T COG2211 251 AFN-IRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLF------LIGLLLLAVGYLLLYFTP 323 (467)
T ss_pred HHH-HHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHH------HHHHHHHHHHHHHHHhhc
Confidence 432 22222233333 3444322 244455566666789999999999999865 4555555555544432 2
Q ss_pred --cCchhHHHHHHHHhhhcccccchHHHHHHhh-------CCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCC
Q 008778 422 --LPGSLYIGSIIVGLCYGVRLAVTVPTASELF-------GLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTA 492 (554)
Q Consensus 422 --~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~-------~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~ 492 (554)
+....++..++.+++.+...+...++++|.. +.+.-|..+|.....+-+|.++ +..+.|++.+..|-...
T Consensus 324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~al-a~~~~g~~L~~~Gyv~~ 402 (467)
T COG2211 324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLAL-AGFIPGWILGAIGYVPN 402 (467)
T ss_pred CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCC
Confidence 2334556668888999998888888887765 3466788999999999999998 78899999998875433
Q ss_pred CCCcccccccchHHHHHHHHH-HHHHHHHHHHHhHHhhhhhHH
Q 008778 493 GGGNTCVGAHCYRLVFVIMAM-ACIVGFGLDILLAAKTKNIYT 534 (554)
Q Consensus 493 ~~~~~~~~~~~~~~~f~i~~~-~~~~~~~~~~~l~~~~~~~~~ 534 (554)
.++++...-.+.+..+.+.-+ +.+++++... ..+-+++.++
T Consensus 403 ~~~Q~~~al~gI~~~~~~~Pa~l~l~~~i~~~-~y~L~~~~~~ 444 (467)
T COG2211 403 VSAQSASALFGIRFLFIILPALLLLLAAIIIF-FYKLNEKMHK 444 (467)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCHHHHH
Confidence 222222223344555555433 3333333333 4444444444
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-12 Score=129.16 Aligned_cols=412 Identities=15% Similarity=0.089 Sum_probs=235.1
Q ss_pred cHHHHHHhcC----CChhhHHH-HHHHHHHHHhhhhhhhhhcccC-CchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 36 YSDALKTLMN----LTQLELNN-LSVVKDIGKAFGLLAGLASDRI-PAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 36 ~~~~i~~~~~----~s~~~~~~-~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
+.-++..+++ +|+++..- ++.+..+.+...+++|+++||+ |+|+++..|.++..+|.++.+.+. . .+..
T Consensus 44 L~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~-~----~~~~ 118 (498)
T COG3104 44 LILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS-V----SGPG 118 (498)
T ss_pred HHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc-c----cccc
Confidence 3344555555 88887766 5566666667789999999995 999999999999999999987761 0 2467
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhccC---CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR---NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVC 186 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~---~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 186 (554)
.++++-++.++|.|..-+.....+.|.+|+ +|-...++...+.++|+.+.+.+.+.+..+.+|+.-|-++.+-....
T Consensus 119 gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~g 198 (498)
T COG3104 119 GLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIG 198 (498)
T ss_pred HHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 788888888899999999999999999963 47888999999999999877777777777788999999999888888
Q ss_pred HHHHhhccccCCCCC-cchhhhhhhhhHh--HHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhh
Q 008778 187 LGAIFFLRETTPAST-VDEEKEEAKYFSI--INTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFI 263 (554)
Q Consensus 187 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (554)
++..+..+..-.... .++....+.+... ............+...... ..+..++.+..+.....++.+ .
T Consensus 199 l~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~i~~~~~~~~~-~ 270 (498)
T COG3104 199 LVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQ-------NTFSGVLLVISILIAIIYFAE-A 270 (498)
T ss_pred HHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-H
Confidence 887776664322211 1111111111111 1111111111100000000 001111111111100001000 0
Q ss_pred hhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHh
Q 008778 264 KSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLC 343 (554)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (554)
+ ++++. + + ++ ++++ .+..+++....
T Consensus 271 ~---~~~~~--------------------------~--~----------er-----------~r~~---~~~~Lfl~~~i 295 (498)
T COG3104 271 F---RSPKV--------------------------F--D----------ER-----------RRLL---AAIPLFLFAVI 295 (498)
T ss_pred h---ccCcc--------------------------H--H----------HH-----------HHHH---HHHHHHHHHHH
Confidence 0 11110 0 0 00 1111 11111111111
Q ss_pred hhcchhhhhccHHHHHh---H---hCCC-cchhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCc-hhHHHHHHHHHHHHH
Q 008778 344 GVGTGLAVMNNMGQIGL---A---LGYV-DVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPR-PIWNAASQILMAVGY 415 (554)
Q Consensus 344 ~~~~~~~~~~~~~~~~~---~---~g~~-~~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~-~~~~~~~~~l~~~~~ 415 (554)
...........+..+.+ + +|++ +.+..-++..+.-++..++..++-.|.++++..++ ..-..++..+++.++
T Consensus 296 FW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~f 375 (498)
T COG3104 296 FWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGF 375 (498)
T ss_pred HHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHH
Confidence 11111112222333332 2 2343 23345566667777777777777777666543322 233345555666665
Q ss_pred HHHHh-----cc------CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHH
Q 008778 416 ILMAV-----AL------PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLY 484 (554)
Q Consensus 416 ~l~~~-----~~------~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~ 484 (554)
+++.. .. .+++....++..++-=...++-.+.++...|++..+.++++..+....+..+ +..+.+...
T Consensus 376 l~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l-~g~va~~~~ 454 (498)
T COG3104 376 LILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTL-GGQVAGLTA 454 (498)
T ss_pred HHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-hceeccccc
Confidence 55432 11 1245667778888877778888899999999999999999998888888877 555555311
Q ss_pred hccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 485 DAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
+ ++ ..+....+...|+.++...++..+....+
T Consensus 455 ~-~~--------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 455 V-TD--------PAYTAFIEGRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred c-cc--------hhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 1 00 00111235677777776665554444333
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-12 Score=125.25 Aligned_cols=367 Identities=14% Similarity=0.096 Sum_probs=223.4
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHhhhhhhhhhcccCC-----chHHH-HHHHHHHHHHHHHHHHHhhccCC------
Q 008778 37 SDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIP-----APIIL-LIGSLEGLVGYGAQWLVVSRKIQ------ 104 (554)
Q Consensus 37 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~dr~G-----~r~~~-~~g~~l~~~~~~~~~~a~~~~~~------ 104 (554)
+..+..|++++..-.+.......+...+.+..|..+|+.+ ||..+ +.|.++++.+..+..++..-...
T Consensus 3 NRVMIvEL~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~ 82 (403)
T PF03209_consen 3 NRVMIVELGVPAWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSS 82 (403)
T ss_pred chhHHHHhccHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 4457788999888877755555555556889999999999 77654 45555666666555544221111
Q ss_pred -CchHHHHH--HHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcCCCh-HHHHHHHH
Q 008778 105 -PLSYWQMC--VFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDP-AKFLFMLA 179 (554)
Q Consensus 105 -~~s~~~l~--~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~-~~~~~~~~ 179 (554)
+...+... +.-.+.|+|.+..-++....++|.-| ++|+++.++.....-+|.++.+.+.+.++++.. -+..-.+.
T Consensus 83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~ 162 (403)
T PF03209_consen 83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQ 162 (403)
T ss_pred cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence 12233222 34566788888888888899999996 579999999999888888777777776665432 11111111
Q ss_pred HHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccc
Q 008778 180 IVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPV 259 (554)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (554)
....+..++.. +++
T Consensus 163 ~~a~i~~~l~~----------------------------------------------------------------ia~-- 176 (403)
T PF03209_consen 163 GVALIALLLNL----------------------------------------------------------------IAL-- 176 (403)
T ss_pred HHHHHHHHHHH----------------------------------------------------------------HHH--
Confidence 11111100000 000
Q ss_pred hhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHH
Q 008778 260 YSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFV 339 (554)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (554)
+. .+|+. . +.++ .+++++......++++..+|+...+++
T Consensus 177 ---wg---~E~r~-~-------~~~~---------------------------~~~~~~~~f~~a~~~~~~~~~a~~f~~ 215 (403)
T PF03209_consen 177 ---WG---QEPRR-S-------RRAA---------------------------AAERPRPPFREAWRQVWASPQARRFFV 215 (403)
T ss_pred ---Hh---cccCC-c-------cccc---------------------------CCCCCCccHHHHHHHHHhCCChhHHHH
Confidence 00 11111 0 0000 000011112234567777787766666
Q ss_pred HHHhhhcchhhhhccHHHHHh-HhCCCcch--hhHHHHHHHHhHhhHHhhcchhh-HhhhcCCCchhHHHHHHHHHHHHH
Q 008778 340 SFLCGVGTGLAVMNNMGQIGL-ALGYVDVS--IFVSLTSIWGFFGRIISGSVSEY-FIKRAGTPRPIWNAASQILMAVGY 415 (554)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~l~~~~~ 415 (554)
..++......+--..+-+|.- .+|++..+ ......+.+..+|....|++..| .++++. ...++.+.++++
T Consensus 216 fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~------a~~G~~~~~~~f 289 (403)
T PF03209_consen 216 FLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRT------AALGCLLGALAF 289 (403)
T ss_pred HHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH------HHHHHHHHHHHH
Confidence 555544443332233444543 36887543 36667788888888889988774 333222 234444444444
Q ss_pred HHHHh----ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCC
Q 008778 416 ILMAV----ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPT 491 (554)
Q Consensus 416 ~l~~~----~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~ 491 (554)
.++.. .+.+.+....+++|++.|......-+...+..++++.|...|.....+.+.-.+ +..++|.+.|....-.
T Consensus 290 ~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Gl-g~~~GG~~~D~~~~~~ 368 (403)
T PF03209_consen 290 ALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGL-GTFLGGALRDLVRALF 368 (403)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 43322 345577788999999999887777788889998999999999999999999998 8889998888653110
Q ss_pred CCCCcccccccchHHHHHHHHHHHHHHHHHH
Q 008778 492 AGGGNTCVGAHCYRLVFVIMAMACIVGFGLD 522 (554)
Q Consensus 492 ~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~ 522 (554)
+. .....|..+|.+=++..++++++.
T Consensus 369 ~~-----~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 369 GN-----SPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred cC-----CcchHHHHHHHHHHHHHHHHHHHH
Confidence 00 122358888888877766665543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-12 Score=124.91 Aligned_cols=160 Identities=19% Similarity=0.118 Sum_probs=130.9
Q ss_pred hhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhcc-CchhH
Q 008778 351 VMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVAL-PGSLY 427 (554)
Q Consensus 351 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~ 427 (554)
+..-.|.+.++.|+|..+ ...+.+.+...++.++.|.++||.+.|+-+ ..++++.++..+++...+ ...+.
T Consensus 48 F~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm------~~gLilsai~nil~Gfs~s~~~~~ 121 (448)
T COG2271 48 FNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFM------AFGLILSAIVNILFGFSPSLFLFA 121 (448)
T ss_pred HhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceee------hHHHHHHHHHHHHHhhhhHHHHHH
Confidence 344566777778888654 477889999999999999999999998866 677777777777765533 34566
Q ss_pred HHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHH--HHHHhccCCCCCCCCcccccccchH
Q 008778 428 IGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLA--GYLYDAQATPTAGGGNTCVGAHCYR 505 (554)
Q Consensus 428 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~--g~i~~~~~~~~~~~~~~~~~~~~~~ 505 (554)
+...+-|++.|..+|...-.+++.+++++||+..++.++.+++|+.+ .|++. +.+.++.+ |+
T Consensus 122 ~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal-~~~~~~la~~~~~~~---------------w~ 185 (448)
T COG2271 122 VLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGAL-APLVALLAFFAFHGG---------------WR 185 (448)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccch-HHHHHHHHHHHhccc---------------hh
Confidence 77788999999999999999999999999999999999999999999 68888 88877764 99
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhh
Q 008778 506 LVFVIMAMACIVGFGLDILLAAKTKNI 532 (554)
Q Consensus 506 ~~f~i~~~~~~~~~~~~~~l~~~~~~~ 532 (554)
..|++-++++++..+..+++.+++.+.
T Consensus 186 ~~f~~pgiiaiival~~~~~~rd~Pqs 212 (448)
T COG2271 186 AAFYFPGIIAIIVALILLFLLRDRPQS 212 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 999999999888777777766554433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-12 Score=131.39 Aligned_cols=169 Identities=15% Similarity=0.077 Sum_probs=126.7
Q ss_pred HHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHH
Q 008778 334 FWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILM 411 (554)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~ 411 (554)
++...+..++.......+....|.+.+++|.+.. +...+...++..++++..|++.||+|+|+.+ ..+.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~------~~~~~~~ 98 (434)
T PRK11663 25 LITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFM------GIGLIAT 98 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhH------HHHHHHH
Confidence 3334444444443333455667888888998854 3477788899999999999999999998765 5556666
Q ss_pred HHHHHHHHhcc-CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCC
Q 008778 412 AVGYILMAVAL-PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATP 490 (554)
Q Consensus 412 ~~~~~l~~~~~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~ 490 (554)
+++.++....+ ...+.+..++.|++.|..++....++.+.+++++++++.|+.+...++|+.+ +|.+.+.+.+..+
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~~~~~l~~~~g-- 175 (434)
T PRK11663 99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGAL-IPLVVGAIALHYG-- 175 (434)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccc--
Confidence 66665554433 3344555667788888888888889999999999999999999999999998 8999999988765
Q ss_pred CCCCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 008778 491 TAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDIL 524 (554)
Q Consensus 491 ~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~ 524 (554)
|++.|++.+++.++..+...+
T Consensus 176 -------------w~~~f~~~~i~~~~~~~~~~~ 196 (434)
T PRK11663 176 -------------WRYGMMIAGIIAIVVGLFLCW 196 (434)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999888766555444333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=127.00 Aligned_cols=177 Identities=18% Similarity=0.088 Sum_probs=120.8
Q ss_pred hhhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHH
Q 008778 330 WTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAAS 407 (554)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~ 407 (554)
+++.++...+...........+....| +.++.|.++. ....+.+.++..++.+..|+++||+|+|+.. ..+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~------~~~ 97 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMP-YLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL------PAG 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhH-HHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceeh------HHH
Confidence 444455444444433332222333344 4445687754 3477788899999999999999999998755 444
Q ss_pred HHHHHHHHHHHHhc----cC-chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHH
Q 008778 408 QILMAVGYILMAVA----LP-GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGY 482 (554)
Q Consensus 408 ~~l~~~~~~l~~~~----~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~ 482 (554)
.++.+++.+..... +. ..+.+..++.|++.|..++.....+.|.+|+++++++.|+.++..++++.+ +|.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~l~~~ 176 (438)
T TIGR00712 98 LILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGI-PPLLVLL 176 (438)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHH-HHHHHHH
Confidence 45555554443321 11 233455667888888877877888899999999999999999999999998 7777776
Q ss_pred HHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHh
Q 008778 483 LYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 483 i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
..+... +|+..|++.++++++..+..+++.++
T Consensus 177 ~~~~~~--------------~w~~~f~~~~~~~~i~~~~~~~~~~~ 208 (438)
T TIGR00712 177 GMAWFN--------------DWHAALYFPAICAIIVALFAFAMMRD 208 (438)
T ss_pred HHHHhh--------------hhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 555432 29999999888887766655555444
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-13 Score=141.97 Aligned_cols=389 Identities=14% Similarity=0.046 Sum_probs=3.0
Q ss_pred hhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhh--ccC-------
Q 008778 34 SNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVS--RKI------- 103 (554)
Q Consensus 34 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~--~~~------- 103 (554)
......++++|+++.+|.+++.+.+-++..+ .++..++.+|..|-+.+-.|.+++++|++++++--- +..
T Consensus 23 ~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~ 102 (539)
T PF03137_consen 23 NSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASN 102 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccc
Confidence 3455689999999999999999899888865 788899999988889999999999999998764200 000
Q ss_pred --------------------------------C--CchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhh
Q 008778 104 --------------------------------Q--PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGIL 148 (554)
Q Consensus 104 --------------------------------~--~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~ 148 (554)
. ..-++.++++.++.|+|....++...+++-|..++ +-+..+|+.
T Consensus 103 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~ 182 (539)
T PF03137_consen 103 SNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGIL 182 (539)
T ss_dssp -------------------------------------------------SSS----------------------------
T ss_pred cccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhh
Confidence 0 00134566789999999999999999999999965 579999999
Q ss_pred HhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhhccccCC---CCCcchhhhhh-hhhHhHHHHHHHHHH
Q 008778 149 KGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTP---ASTVDEEKEEA-KYFSIINTVAIVVAL 224 (554)
Q Consensus 149 ~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~ 224 (554)
.+...+|++++-.+++..++.+.- +...+. ..+.+|....+ |..-++...
T Consensus 183 ~~~~~lGPa~Gf~lg~~~L~~yvD--------------------~~~~~~~~~~i~p~dp~WvGAWWLGfli~g------ 236 (539)
T PF03137_consen 183 YAMSILGPALGFLLGSFCLRIYVD--------------------FPKVPPDGVGITPSDPRWVGAWWLGFLICG------ 236 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHhhccHHHHHHHHHHHHhceeC--------------------CccccccCCCCCCCCccHHHHHHHHHHHHH------
Confidence 998888887654444433321100 000110 11111222222 322221111
Q ss_pred HHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchh
Q 008778 225 YLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTV 304 (554)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (554)
.+.++..+|+..+-| +-|++ ...+++.+.++. ..++..+++..
T Consensus 237 ---------------------~~~~l~aipl~~FPk-------~lp~~-~~~~~~~~~~~~-------~~~~~~~~~~~- 279 (539)
T PF03137_consen 237 ---------------------ILLFLSAIPLFFFPK-------KLPGT-SERQEEKESSER-------KEEDSDKDSFK- 279 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------HHHHHHHHHHHcCCc-------cCCCc-ccccchhhhhhc-------chhhhhhhccc-
Confidence 111112222222211 11111 000000000000 00000000000
Q ss_pred hhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcch--hhHH-HHHHHHhH
Q 008778 305 VAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDVS--IFVS-LTSIWGFF 380 (554)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~-~~~~~~~~ 380 (554)
+.+.. +......+.-....+++++||.|....++..........+..+.|-|.|. ++.++.. .... ..-.+.++
T Consensus 280 -~~~~~-~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~ 357 (539)
T PF03137_consen 280 -DPKSK-KSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAAL 357 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -ccccc-cchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhhe
Confidence 00000 00000111233467899999999988887776666666777888888874 6776532 3332 33346788
Q ss_pred hhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHH---HHHHH--h--------cc-------------------------
Q 008778 381 GRIISGSVSEYFIKRAGTPRPIWNAASQILMAVG---YILMA--V--------AL------------------------- 422 (554)
Q Consensus 381 g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~---~~l~~--~--------~~------------------------- 422 (554)
|.+++|++..|++-+.+-...+..... ++..+. .+++. . ..
T Consensus 358 G~llGG~ivkk~kl~~~~~~~~~~v~~-~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~ 436 (539)
T PF03137_consen 358 GILLGGYIVKKFKLSARGAAKFCIVVS-IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNG 436 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ehheEEEEEEEecCcHHHHHHHHHHHH-HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcc
Confidence 999999999998654322111111111 111111 11100 0 00
Q ss_pred ---C--------chhHHH---HHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccC
Q 008778 423 ---P--------GSLYIG---SIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQA 488 (554)
Q Consensus 423 ---~--------~~~~~~---~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~ 488 (554)
+ ..+... .++.-+..+........++.+.+++++++.+.|+..+...+-+.+=||++.|.+.|.+-
T Consensus 437 ~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tC 516 (539)
T PF03137_consen 437 SATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTC 516 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhhh
Confidence 0 001111 11111222223334444567888999999999999988766666669999999999873
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-10 Score=114.71 Aligned_cols=152 Identities=13% Similarity=0.060 Sum_probs=107.8
Q ss_pred cccchhHHHHHHHHHHHhhccc-h-hhhhcHHHHHH-hcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCc-hHHHHH
Q 008778 9 SSAGKWLGFVTAVWVQAISGNN-Y-TFSNYSDALKT-LMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPA-PIILLI 83 (554)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~g~~-~-~~~~~~~~i~~-~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~-r~~~~~ 83 (554)
.++.+|.....+.+..+..++. + .....-|++++ |.+.+.+-.||+.....++... +|+.|....|.+. |+.++.
T Consensus 28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~ 107 (488)
T KOG2325|consen 28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIV 107 (488)
T ss_pred ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHH
Confidence 4456777766666655554443 2 22233355554 5778888899977777777754 9999999999985 888888
Q ss_pred HHHHHHHHHHHH-HHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHh-hccCCCccchHhhHhhhhhhHHHHHH
Q 008778 84 GSLEGLVGYGAQ-WLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIR-NFRRNRGPVSGILKGYVGLSTAIFTD 161 (554)
Q Consensus 84 g~~l~~~~~~~~-~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~-~fp~~rg~a~gi~~~~~~lg~~i~~~ 161 (554)
|.++..+|.++. ++.... ++..+.++++|++.|+|.+... ..-.++++ ..+++|.+|++....+..+|..+ +|
T Consensus 108 s~ii~~~g~llY~~l~~~~---~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~il-Gp 182 (488)
T KOG2325|consen 108 SFLIAIIGNLLYLALAYVP---NGVKYLMLVARILTGVGVGNFA-VLRAYIADASTVEDRPRAFAATSGGFVLGIIL-GP 182 (488)
T ss_pred HHHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHcCcCcccHH-HHHHHHHhccCccchHHHHHHhhhHHHHHHHH-hH
Confidence 999999999887 554333 1367888999999999988864 44455555 45788999999888877777655 44
Q ss_pred HHHh
Q 008778 162 LCSA 165 (554)
Q Consensus 162 l~~~ 165 (554)
..+.
T Consensus 183 ~~q~ 186 (488)
T KOG2325|consen 183 TIQL 186 (488)
T ss_pred HHHH
Confidence 4443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=119.47 Aligned_cols=173 Identities=17% Similarity=0.179 Sum_probs=150.8
Q ss_pred hHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHH
Q 008778 333 DFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQIL 410 (554)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l 410 (554)
..+.+.++.|......+.....+|++.++++.+.. ...++.++++..++.++...++||+.||+.+ .....+
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lL------l~~l~l 87 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLL------LGLLAL 87 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH------HHHHHH
Confidence 45666777777777777888999999999999864 4588999999999999999999999999876 666777
Q ss_pred HHHHHHHHHhcc-CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCC
Q 008778 411 MAVGYILMAVAL-PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQAT 489 (554)
Q Consensus 411 ~~~~~~l~~~~~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~ 489 (554)
++++.++..... ...+.+.-++.|+..|..++...+++.++.|+++++++.++.++...++..+ |.+++.++-|..|
T Consensus 88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~-GvPLGt~ig~~~G- 165 (394)
T COG2814 88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVL-GVPLGTFLGQLFG- 165 (394)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHH-hccHHHHHHHHhh-
Confidence 788887766544 4577889999999999999999999999999999999999999999999998 8999999999998
Q ss_pred CCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHH
Q 008778 490 PTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAA 527 (554)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~ 527 (554)
||.+|.+.+.+.+++++..+...+
T Consensus 166 --------------WR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 166 --------------WRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999998888777666
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=124.00 Aligned_cols=173 Identities=14% Similarity=0.037 Sum_probs=125.2
Q ss_pred hHHHHHHHHHhhhcchhhhhccHHHHHh-HhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHH
Q 008778 333 DFWILFVSFLCGVGTGLAVMNNMGQIGL-ALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQI 409 (554)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 409 (554)
.++.+.+..++..........+++.+.+ ++|+++. +...+...+...++++..|+++||+|+|+.+ ..+..
T Consensus 8 ~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~------~~~~~ 81 (395)
T PRK10054 8 STSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYM------LLAIT 81 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH------HHHHH
Confidence 4666666666666666666777887775 5798864 3467777888999999999999999998755 44444
Q ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccC
Q 008778 410 LMAVGYILMAVAL-PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQA 488 (554)
Q Consensus 410 l~~~~~~l~~~~~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~ 488 (554)
+.+++.+++...+ ....++...+.|.+.+...+....+..|.+++++++++.|+.+...++|..+ +|.+.+.+.+ .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~i-gp~l~~~l~~-~g 159 (395)
T PRK10054 82 AFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTV-GPPLGTLLVM-QS 159 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hc
Confidence 4555555444333 2333444455566656556677888899999999999999999999999998 8999998875 33
Q ss_pred CCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHh
Q 008778 489 TPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
|+.+|++.+++.+++.++..+..++
T Consensus 160 ---------------~~~~f~~~~~~~~i~~i~~~~~~~~ 184 (395)
T PRK10054 160 ---------------INLPFWLAAICSAFPLVFIQIWVQR 184 (395)
T ss_pred ---------------cCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 8899998888777765555444333
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=127.71 Aligned_cols=168 Identities=16% Similarity=0.243 Sum_probs=131.7
Q ss_pred hHHHHHHHHHhhhcchhhhhccHHHHHhH---hCCCcc--hhhHHHHHHHHhHhhHHhhcchhh-HhhhcCCCchhHHHH
Q 008778 333 DFWILFVSFLCGVGTGLAVMNNMGQIGLA---LGYVDV--SIFVSLTSIWGFFGRIISGSVSEY-FIKRAGTPRPIWNAA 406 (554)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr-~g~r~~~~~~~~~~~ 406 (554)
.+|.+.+..++.....+....+++.|+++ +|+++. ....+.+.++..++++.+|+++|| +|||+.+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l------~~ 84 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTM------VL 84 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHH------HH
Confidence 35566666666556666777888888765 677753 447788889999999999999999 8999876 66
Q ss_pred HHHHHHHHHHHHHhcc-CchhHHHHHHHHhhhcccccchHHHHHHhhCCcc---hhhHHHHHHhhhhhhHHHhhhhHHHH
Q 008778 407 SQILMAVGYILMAVAL-PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKY---YGLIYNILILNLPLGSFLFSGLLAGY 482 (554)
Q Consensus 407 ~~~l~~~~~~l~~~~~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~g~~l~~p~i~g~ 482 (554)
+..+.+++.+++...+ ...+++...+.|++.|...+...+++.+.+++++ +++++++.+...++|..+ ||.+.++
T Consensus 85 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~i-g~~l~g~ 163 (475)
T TIGR00924 85 GGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFI-SPLLAGV 163 (475)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHH-HHHHHHH
Confidence 6667777776665533 3455667778889988888899999999998754 888999999999999998 9999999
Q ss_pred HHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHH
Q 008778 483 LYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLD 522 (554)
Q Consensus 483 i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~ 522 (554)
+.+..+ |+..|.+.++..+++.+..
T Consensus 164 l~~~~g---------------~~~~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 164 IAENYG---------------YHVGFNLAAVGMVIGLLTF 188 (475)
T ss_pred HHHhcC---------------hHHHHHHHHHHHHHHHHHH
Confidence 998875 9999999886666654443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.7e-12 Score=125.33 Aligned_cols=155 Identities=23% Similarity=0.296 Sum_probs=122.4
Q ss_pred hhhccHH-HHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-ccCch
Q 008778 350 AVMNNMG-QIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-ALPGS 425 (554)
Q Consensus 350 ~~~~~~~-~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~ 425 (554)
.....++ .+.+++|.++. +...+...++..++.+..|+++||+|||+.+ ..+.++.+++.++... .+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~ 87 (352)
T PF07690_consen 14 IISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVL------IIGLLLFALGSLLLAFASNFWL 87 (352)
T ss_dssp HHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHH------HHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeE------eehhhhhhhHHHHhhhhhhHHH
Confidence 3445556 55667887754 4477788899999999999999999999854 5566666666333333 34446
Q ss_pred hHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchH
Q 008778 426 LYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYR 505 (554)
Q Consensus 426 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~ 505 (554)
+.+..++.|++.+...+....++.|.+++++++++.|+......+|..+ +|.+.+.+.+..+ |+
T Consensus 88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~~~---------------~~ 151 (352)
T PF07690_consen 88 LLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSIL-GPLLGGFLISYFG---------------WR 151 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHCH---------------HC
T ss_pred Hhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhc-ccchhhhhhhccc---------------cc
Confidence 6788889999999999999999999999999999999999999999998 8999999887765 89
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 008778 506 LVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 506 ~~f~i~~~~~~~~~~~~~~l~ 526 (554)
..|++.+++.+++.++...+.
T Consensus 152 ~~~~~~~~~~~~~~il~~~~~ 172 (352)
T PF07690_consen 152 WAFLISAILSLIAAILFILFL 172 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHCCC
T ss_pred cccccccchhhhhhhhHhhhh
Confidence 999999999888877543433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-11 Score=125.47 Aligned_cols=173 Identities=16% Similarity=0.211 Sum_probs=135.5
Q ss_pred hhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHH
Q 008778 332 VDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQI 409 (554)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 409 (554)
+.+|.++...++.......+...+|.+.+++|.++.. ...+.+.++..++.++.|+++||+|||+.. ..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~ 83 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIF------FTAIV 83 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH------HHHHH
Confidence 3567777777776666666777889999999998643 466777888899999999999999998754 44444
Q ss_pred HHHHHHHHHHhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccC
Q 008778 410 LMAVGYILMAVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQA 488 (554)
Q Consensus 410 l~~~~~~l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~ 488 (554)
+..++.+..... +...+++..++.|++.+...+.....+.|.+|++++++++|+.....+++..+ +|.+.|.+.|..+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~g~l~~~~g 162 (471)
T PRK10504 84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLL-GPALGGLLVEYAS 162 (471)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhhcc
Confidence 455554444333 33456677888999988888888889999999999999999999999999998 8999999998775
Q ss_pred CCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhH
Q 008778 489 TPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~ 526 (554)
|++.|.+...+..++.+......
T Consensus 163 ---------------w~~~f~~~~~~~~l~~~~~~~~~ 185 (471)
T PRK10504 163 ---------------WHWIFLINIPVGIIGAIATLMLM 185 (471)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999998877777666555443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.1e-11 Score=121.08 Aligned_cols=179 Identities=16% Similarity=0.168 Sum_probs=128.7
Q ss_pred HHHHHHHHhhhcchhhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHH
Q 008778 335 WILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMA 412 (554)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~ 412 (554)
+.+++.+++............+.+.+++|.++.. ...+.+.++..++.+..|+++||+|||+.+ ..+.++..
T Consensus 11 ~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~------~~~~~~~~ 84 (412)
T TIGR02332 11 IFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWI------AGIMVLWG 84 (412)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHH------HHHHHHHH
Confidence 3334444443333333444455566788887543 477888999999999999999999999865 55566666
Q ss_pred HHHHHHHhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCC
Q 008778 413 VGYILMAVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPT 491 (554)
Q Consensus 413 ~~~~l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~ 491 (554)
++.++.... +...+++..++.|++.+...+....++.|.+|+++|+++.|+.+....+|..+ ++.+.+++.+..+..
T Consensus 85 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~- 162 (412)
T TIGR02332 85 IASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMAL-GLILSGYILALDGLM- 162 (412)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCC-
Confidence 666655543 44566778889999999888888888999999999999999999999999998 899999887532100
Q ss_pred CCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhh
Q 008778 492 AGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKT 529 (554)
Q Consensus 492 ~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~ 529 (554)
+..+|++.|++.++..++..++.++..+++
T Consensus 163 --------~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~ 192 (412)
T TIGR02332 163 --------ALKGWQWLFLLEGFPSVILGVMTWFWLDDS 192 (412)
T ss_pred --------CccchhHHHHHHHHHHHHHHHHHhhccCCC
Confidence 001399999998877766555555544443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=122.36 Aligned_cols=160 Identities=15% Similarity=0.202 Sum_probs=125.2
Q ss_pred chhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cC
Q 008778 347 TGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LP 423 (554)
Q Consensus 347 ~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~ 423 (554)
.........|.+.+++|.++. ....+...++..++.++.|++.||+|||+.. ..+..+.+++.+..... +.
T Consensus 20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~~~~~~~~~~~~~~~~ 93 (385)
T TIGR00710 20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVL------LLGLFIFALSSLGLALSNNI 93 (385)
T ss_pred HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH------HHHHHHHHHHHHHHHHHccH
Confidence 334455667888888998754 3467788899999999999999999998765 45555555665555443 33
Q ss_pred chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccc
Q 008778 424 GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHC 503 (554)
Q Consensus 424 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~ 503 (554)
..+.+..++.|++.+...+...+++.|.+|+++++++.|+......++..+ +|.+.+.+.+..+
T Consensus 94 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~~--------------- 157 (385)
T TIGR00710 94 ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAV-APLLGGYILVWLS--------------- 157 (385)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC---------------
Confidence 456667788899888888888899999999999999999999999999998 8999999888775
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHh
Q 008778 504 YRLVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 504 ~~~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
|+..|++.+++.++..+...+..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (385)
T TIGR00710 158 WHAIFAFLSLAGILLSALIFFILPE 182 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999998887777766655544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-11 Score=121.56 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=120.7
Q ss_pred hhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCchh
Q 008778 350 AVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGSL 426 (554)
Q Consensus 350 ~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~ 426 (554)
.....+|++.+++|.++. ....+...++..+++++.|++.||+|||+.+ ..+..+.+++.++.... +.+.+
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~------~~~~~~~~~~~~~~~~~~~~~~l 111 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVV------ILFAVLLTLSCLLVSFANSFSLL 111 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHH------HHHHHHHHHHHHHHHHHChHHHH
Confidence 444567888889998864 3466788899999999999999999999765 55566666665554443 34566
Q ss_pred HHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHH
Q 008778 427 YIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRL 506 (554)
Q Consensus 427 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~ 506 (554)
++..++.|++.|...+....++.|.+++|+++.+.++.....+++..+ +|.+.+.+.+..+ |++
T Consensus 112 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~i-g~~l~~~l~~~~g---------------w~~ 175 (394)
T PRK10213 112 LIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVI-AAPLGSFLGELIG---------------WRN 175 (394)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcC---------------HHH
Confidence 777889999999888889999999999999999999999999999998 8999999998875 999
Q ss_pred HHHHHHHHHHHHHH
Q 008778 507 VFVIMAMACIVGFG 520 (554)
Q Consensus 507 ~f~i~~~~~~~~~~ 520 (554)
.|++.+++.++..+
T Consensus 176 ~f~~~~~l~~~~~l 189 (394)
T PRK10213 176 VFNAAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988866655443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.1e-11 Score=121.74 Aligned_cols=170 Identities=14% Similarity=0.121 Sum_probs=132.0
Q ss_pred hHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHH
Q 008778 333 DFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQIL 410 (554)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l 410 (554)
.++.+.+..+............+|.+.+++|.+.. +...+...++..++++..|++.||+|||+.+ ..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~ 77 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHIL------LFLVAL 77 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHH------HHHHHH
Confidence 45555555554444445566778888888998754 4477888999999999999999999998865 566666
Q ss_pred HHHHHHHHHhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCC
Q 008778 411 MAVGYILMAVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQAT 489 (554)
Q Consensus 411 ~~~~~~l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~ 489 (554)
.+++.++.... +.+.+++..++.|++.+...+.....+.+.+++++++.+.|+......++..+ +|.+.+.+.+..+
T Consensus 78 ~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~~g- 155 (382)
T PRK10091 78 CVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLL-GIPLGTYLSQEFS- 155 (382)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHH-hccHHHHHhhhcc-
Confidence 66666655543 34466777889999888877777888899999999999999999999999998 8999998888765
Q ss_pred CCCCCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 008778 490 PTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDIL 524 (554)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~ 524 (554)
|+++|++.+++.++..+...+
T Consensus 156 --------------wr~~f~~~~~~~~~~~~~~~~ 176 (382)
T PRK10091 156 --------------WRYTFLLIAVFNIAVLASIYF 176 (382)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999988877666554433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-11 Score=124.46 Aligned_cols=156 Identities=18% Similarity=0.128 Sum_probs=123.4
Q ss_pred hhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-ccCchhH
Q 008778 351 VMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-ALPGSLY 427 (554)
Q Consensus 351 ~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~ 427 (554)
+....|.+.+++|.++. ....+...++..++.+..|+++||+|||+.. ..+.++.+++..+... .+...++
T Consensus 13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 86 (399)
T TIGR00893 13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTL------AVFIVIWGVFTGLQAFAGAYVSLY 86 (399)
T ss_pred hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceee------HHHHHHHHHHHHHHHHHcCHHHHH
Confidence 33445666677888754 4477888999999999999999999999876 5555555555555443 3445667
Q ss_pred HHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHH
Q 008778 428 IGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLV 507 (554)
Q Consensus 428 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 507 (554)
+..++.|++.+...+....++.|.+|+++|+++.|+......+|..+ +|.+.+.+.+..+ |++.
T Consensus 87 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~---------------~~~~ 150 (399)
T TIGR00893 87 ILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGII-GGPLVGWILIHFS---------------WQWA 150 (399)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHH-HHHHHHHHHHhCC---------------chHH
Confidence 78889999999888899999999999999999999999999999998 8999999888775 8999
Q ss_pred HHHHHHHHHHHHHHHHHhHHh
Q 008778 508 FVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 508 f~i~~~~~~~~~~~~~~l~~~ 528 (554)
|++.+++.++..+...+..++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ 171 (399)
T TIGR00893 151 FIIEGVLGIIWGVLWLKFIPD 171 (399)
T ss_pred HHHHHHHHHHHHHHhhheecC
Confidence 998887777666655544433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-10 Score=120.57 Aligned_cols=167 Identities=16% Similarity=0.079 Sum_probs=113.4
Q ss_pred hhhhhcHHHHH-HhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchH
Q 008778 31 YTFSNYSDALK-TLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY 108 (554)
Q Consensus 31 ~~~~~~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~ 108 (554)
|....+.|.+. +++|.+..+..+......++..+ .++.|++.||+|||+++..+.++..++.+.+...... ++.
T Consensus 267 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~----~~~ 342 (490)
T PRK10642 267 YMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS----NVI 342 (490)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC----CCH
Confidence 55556677764 67899888777766666666654 7899999999999999888876554443332221111 456
Q ss_pred HHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHH
Q 008778 109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVC 186 (554)
Q Consensus 109 ~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~-~~~~~~~~~~~~~~~~~ 186 (554)
..+++++++.|++.+........++.+.||+ .|++++|+......+++.+++.+.+.+.+. ..|+..++...+++++.
T Consensus 343 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~ 422 (490)
T PRK10642 343 GLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIG 422 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 7777889998887777666667778889986 599999975444445556777777766653 33454444555566666
Q ss_pred HHHHhhccccCCCCC
Q 008778 187 LGAIFFLRETTPAST 201 (554)
Q Consensus 187 ~~~~~~~~~~~~~~~ 201 (554)
++..++++|.|.+..
T Consensus 423 ~~~~~~~pes~~~~~ 437 (490)
T PRK10642 423 LITGVTMKETANRPL 437 (490)
T ss_pred HHHHHHhccccCCCC
Confidence 666677788776543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-10 Score=116.77 Aligned_cols=155 Identities=10% Similarity=0.049 Sum_probs=117.5
Q ss_pred hhhcHHH-HHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 008778 33 FSNYSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ 110 (554)
Q Consensus 33 ~~~~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~ 110 (554)
+....|. +++++|++..+.+++.+...+..+. .++.|++.||+|+|+.+..+.....+........ ++++.
T Consensus 235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 307 (393)
T PRK15011 235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA-------HSPAI 307 (393)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-------hhHHH
Confidence 3334454 5678999999999865554444443 7899999999999998887766555554443333 56777
Q ss_pred HHHHHHHHhchhhHhhhhHHHHHHhhccCCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH
Q 008778 111 MCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAI 190 (554)
Q Consensus 111 l~~~r~l~Gig~g~~~~~~~~~i~~~fp~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 190 (554)
+++.+++.+++.+...+.......|.+|++||+++++......+|..+++.+.+.+.+..+|+..+..+.++.++.++..
T Consensus 308 ~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK15011 308 LLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCL 387 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 77889988888887776777778899998999999999888889998888888877776778888888877777777666
Q ss_pred hhcc
Q 008778 191 FFLR 194 (554)
Q Consensus 191 ~~~~ 194 (554)
++++
T Consensus 388 ~~~~ 391 (393)
T PRK15011 388 LRIK 391 (393)
T ss_pred Hhhc
Confidence 6554
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.2e-11 Score=121.35 Aligned_cols=152 Identities=13% Similarity=0.075 Sum_probs=119.6
Q ss_pred hhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCchhH
Q 008778 351 VMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGSLY 427 (554)
Q Consensus 351 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~ 427 (554)
....+|.+.+++|.++.. ...+.+.++..++.+..|++.||+|||+.+ ..+..+.+++.+..... +.+.+.
T Consensus 28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~l~ 101 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLL------IGLFVLFIASHVLSALAWNFTVLL 101 (390)
T ss_pred HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH------HHHHHHHHHHHHHHHHhccHHHHH
Confidence 334568888889887644 466778888889999999999999999865 55566666665555443 334556
Q ss_pred HHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHH
Q 008778 428 IGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLV 507 (554)
Q Consensus 428 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 507 (554)
+..++.|++.+...+...+++.|.+++++|+++.|+......++..+ +|.+.+.+.+..+ |++.
T Consensus 102 ~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~i-g~~l~~~l~~~~g---------------w~~~ 165 (390)
T PRK03545 102 ISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVL-GLPLGRVIGQYLG---------------WRTT 165 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHH-HhhHHHHHHHHhc---------------HHHH
Confidence 66778888877777778889999999999999999999999999998 8999999888775 9999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008778 508 FVIMAMACIVGFGLDIL 524 (554)
Q Consensus 508 f~i~~~~~~~~~~~~~~ 524 (554)
|++.+++.++..+....
T Consensus 166 f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 166 FLAIGGGALITLLLLIK 182 (390)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998877766555444
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=122.17 Aligned_cols=176 Identities=17% Similarity=0.203 Sum_probs=126.7
Q ss_pred Hhhhhhhh-HHHHHHHHHhhhcchhhhhccHHHHH-hHhCCCcchh--hHHHHHHHHhHhhHHhhcchhh-HhhhcCCCc
Q 008778 326 FEAMWTVD-FWILFVSFLCGVGTGLAVMNNMGQIG-LALGYVDVSI--FVSLTSIWGFFGRIISGSVSEY-FIKRAGTPR 400 (554)
Q Consensus 326 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~--~~~~~~~~~~~g~~~~G~l~Dr-~g~r~~~~~ 400 (554)
.+.+++|+ +|..+...++.....+.+..+++.+. +++|+++... ..+.+........+++|+++|| +|||+.+
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~-- 91 (500)
T PRK09584 14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVI-- 91 (500)
T ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH--
Confidence 45557774 77777776766666667777888887 4588876432 3334444444445789999999 5998765
Q ss_pred hhHHHHHHHHHHHHHHHHHhc-cC-chhHHHHHHHHhhhcccccchHHHHHHhhCCcc--hhhHHHHHHhhhhhhHHHhh
Q 008778 401 PIWNAASQILMAVGYILMAVA-LP-GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKY--YGLIYNILILNLPLGSFLFS 476 (554)
Q Consensus 401 ~~~~~~~~~l~~~~~~l~~~~-~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~l~~ 476 (554)
..+..+.+++..++... +. ..+++..++.|++.|...+...+++.+.+|+++ +..++++.+...++|+.+ +
T Consensus 92 ----~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~-g 166 (500)
T PRK09584 92 ----MLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFF-S 166 (500)
T ss_pred ----HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHH-H
Confidence 56666666666555443 22 244556677888888888888899999997643 456788889999999998 9
Q ss_pred hhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHH
Q 008778 477 GLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDI 523 (554)
Q Consensus 477 p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~ 523 (554)
|.+.|++.|..+ |++.|.+.++...++.+..+
T Consensus 167 p~i~g~l~~~~g---------------~~~~F~i~~i~~~i~~i~~~ 198 (500)
T PRK09584 167 MLATPWLAAKYG---------------WSVAFALSVVGMLITVVNFA 198 (500)
T ss_pred HHHHHHHHHhhC---------------HHHHHHHHHHHHHHHHHHHH
Confidence 999999999876 99999998866666554433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-11 Score=123.60 Aligned_cols=166 Identities=11% Similarity=0.017 Sum_probs=122.5
Q ss_pred HHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHH
Q 008778 338 FVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGY 415 (554)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~ 415 (554)
....++...........+|.+..+.+.++. +...+...++..++.+..|+++||+|||+.+ ..+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~------~~~~~~~~~~~ 78 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVM------IGADLIRAVLV 78 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHH------HHHHHHHHHHH
Confidence 333343333333445556777777777654 3467788899999999999999999998765 44444433333
Q ss_pred HHHHh-c-----cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCC
Q 008778 416 ILMAV-A-----LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQAT 489 (554)
Q Consensus 416 ~l~~~-~-----~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~ 489 (554)
.+... . +.+.+++..++.|++.+...+...+++.|.+++++++++.|+......+|..+ +|.+.+.+.+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~~g- 156 (365)
T TIGR00900 79 AVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIV-GPGIGGLMYATLG- 156 (365)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHhh-
Confidence 33222 2 33456677788899888888888999999999999999999999999999998 8999999988875
Q ss_pred CCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 490 PTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
|+..|++.++..+++.+....+
T Consensus 157 --------------~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 157 --------------IKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHhc
Confidence 8999988887766665554443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=119.28 Aligned_cols=168 Identities=16% Similarity=0.199 Sum_probs=123.5
Q ss_pred hHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcch--hhHHHHHHHHhHhhHHhhcchhhH-hhhcCCCchhHHHHHH
Q 008778 333 DFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDVS--IFVSLTSIWGFFGRIISGSVSEYF-IKRAGTPRPIWNAASQ 408 (554)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~-g~r~~~~~~~~~~~~~ 408 (554)
.+|.++..........+.+..+++.++++ +|+++.. ...+.+.....++.+++|+++||+ |||+.+ ..+.
T Consensus 10 ~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i------liG~ 83 (493)
T PRK15462 10 AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV------MLGA 83 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH------HHHH
Confidence 45555555555555566667778888764 6887643 366777788888999999999999 998865 5666
Q ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHhhhcccccchHHHHHHhhCCc--chhhHHHHHHhhhhhhHHHhhhhHHHHHH
Q 008778 409 ILMAVGYILMAVAL--PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLK--YYGLIYNILILNLPLGSFLFSGLLAGYLY 484 (554)
Q Consensus 409 ~l~~~~~~l~~~~~--~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~l~~p~i~g~i~ 484 (554)
+++.++.+++.... ....++...+..++.|...+..++++.|.+|++ +|.++.++.+...++|+.+ +|.+.|++.
T Consensus 84 il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~i-ap~l~g~L~ 162 (493)
T PRK15462 84 LLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSII-APIACGYAQ 162 (493)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHH-HHHHHHHHH
Confidence 66666655544322 223444555566677777777888999999875 6999999999999999998 999999998
Q ss_pred hccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHH
Q 008778 485 DAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLD 522 (554)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~ 522 (554)
+..+ |+..|.+.++..+++++..
T Consensus 163 ~~~G---------------w~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 163 EEYS---------------WAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred hhhC---------------hHHHHHHHHHHHHHHHHHH
Confidence 8776 9999998876655555443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.25 E-value=8e-11 Score=126.84 Aligned_cols=162 Identities=10% Similarity=0.121 Sum_probs=117.1
Q ss_pred ccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHH
Q 008778 353 NNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGSLYIG 429 (554)
Q Consensus 353 ~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~ 429 (554)
..+|.+.+++|.+.. +...+...++.++|.+++|+++||+|||+.+ ..+.++.+++.++.... +...+++.
T Consensus 188 ~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~l------ii~lil~~i~~ll~afa~s~~~llv~ 261 (742)
T TIGR01299 188 FVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCL------LICLSVNGFFAFFSSFVQGYGFFLFC 261 (742)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345666677888754 3467788999999999999999999999765 44444445554444433 34466778
Q ss_pred HHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHH
Q 008778 430 SIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFV 509 (554)
Q Consensus 430 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~ 509 (554)
.++.|++.|...+..+.++.|.+|++.||...++..+...+|.++ ++.++..+....+.... ....+...+|++.++
T Consensus 262 R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~il-a~~la~~il~~~G~~~~--~g~~~~~~gWR~l~~ 338 (742)
T TIGR01299 262 RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY-AAAMAWAIIPHYGWSFQ--MGSAYQFHSWRVFVI 338 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccchhc--cccccccccHHHHHH
Confidence 889999999999999999999999999999999999999999998 78777666654331100 001123346999888
Q ss_pred HHHHHHHHHHHHHH
Q 008778 510 IMAMACIVGFGLDI 523 (554)
Q Consensus 510 i~~~~~~~~~~~~~ 523 (554)
+.++..++.++...
T Consensus 339 i~~lp~ll~ll~~~ 352 (742)
T TIGR01299 339 VCAFPCVFAIGALT 352 (742)
T ss_pred HHHHHHHHHHHHHH
Confidence 88776666554433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.1e-11 Score=121.51 Aligned_cols=155 Identities=22% Similarity=0.253 Sum_probs=118.6
Q ss_pred hhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCchh
Q 008778 350 AVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGSL 426 (554)
Q Consensus 350 ~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~ 426 (554)
......|.+.+++|.++. ....+...++..++.++.|+++||++||+.+ ..+..+.+++.++.... +...+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 108 (398)
T TIGR00895 35 AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVL------LWSILLFSVFTLLCALATNVTQL 108 (398)
T ss_pred HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHH------HHHHHHHHHHHHHHHHccchHHH
Confidence 344556777778888754 3466777888999999999999999998754 44455555555444433 33456
Q ss_pred HHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHH
Q 008778 427 YIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRL 506 (554)
Q Consensus 427 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~ 506 (554)
++..++.|++.+...+...+++.|.+|+++++++.|+......+|..+ +|.+.+.+.+..+ |+.
T Consensus 109 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~g---------------~~~ 172 (398)
T TIGR00895 109 LILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAV-GGFLAGWLIPVFG---------------WRS 172 (398)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHH-HHHHHHHHhhccc---------------cee
Confidence 677788999999888899999999999999999999999999999998 8999999988775 888
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 008778 507 VFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 507 ~f~i~~~~~~~~~~~~~~l~ 526 (554)
.|++.+++.++..++.....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~ 192 (398)
T TIGR00895 173 LFYVGGIAPLLLLLLLMRFL 192 (398)
T ss_pred ehhhhhhHHHHHHHHHHHhC
Confidence 88888656555555444433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=118.20 Aligned_cols=168 Identities=13% Similarity=0.131 Sum_probs=123.5
Q ss_pred hHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHH
Q 008778 333 DFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQIL 410 (554)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l 410 (554)
.+|.....+++...........+|++.+++|+++.. ...+...++..+++++.|++.||+|||+.+ ..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~------~~~~~~ 81 (394)
T PRK03699 8 LTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQL------IFGFAL 81 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH------HHHHHH
Confidence 345554555444444444556678888889988643 466778889999999999999999999754 445555
Q ss_pred HHHHHHHHHhcc-CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCC
Q 008778 411 MAVGYILMAVAL-PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQAT 489 (554)
Q Consensus 411 ~~~~~~l~~~~~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~ 489 (554)
.+++.++....+ ...+.+..++.|++.|...+.....+.|.+|+++++.+.+.......+++.+ +|.+.+.+.+...
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~- 159 (394)
T PRK03699 82 MILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI-FPIIAAYLLARSI- 159 (394)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccc-
Confidence 555555544433 3355667788898888888888889999999899999999988888888888 7988888765432
Q ss_pred CCCCCCcccccccchHHHHHHHHHHHHHHHHH
Q 008778 490 PTAGGGNTCVGAHCYRLVFVIMAMACIVGFGL 521 (554)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~ 521 (554)
+|++.|.+.+++.++..++
T Consensus 160 -------------gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 160 -------------EWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred -------------cHHHHHHHHHHHHHHHHHH
Confidence 2999999888776655443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-10 Score=117.19 Aligned_cols=163 Identities=15% Similarity=0.254 Sum_probs=120.8
Q ss_pred HHHHHHhhhcchhhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHH
Q 008778 337 LFVSFLCGVGTGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVG 414 (554)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~ 414 (554)
.++..+.............+.+.+++|.++.. ...+...++..++.++.|+++||+|||+.+ ..+..+.+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~------~~~~~~~~~~ 90 (405)
T TIGR00891 17 AWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPM------VTSIVLFSAG 90 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHH
Confidence 33333333333333445556677788887543 477788899999999999999999999865 4555555555
Q ss_pred HHHHHhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCC
Q 008778 415 YILMAVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAG 493 (554)
Q Consensus 415 ~~l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~ 493 (554)
.++.... +...+++..++.|++.+...+...+++.|.+++++++.+.|+......+|..+ ++.+.+.+.+..+.
T Consensus 91 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~l~~~l~~~~~~---- 165 (405)
T TIGR00891 91 TLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVV-AAQVYSLVVPVWGD---- 165 (405)
T ss_pred HHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCc----
Confidence 5554433 33456677888999989888888999999999999999999999999999998 89898888876542
Q ss_pred CCcccccccchHHHHHHHHHHHHHHH
Q 008778 494 GGNTCVGAHCYRLVFVIMAMACIVGF 519 (554)
Q Consensus 494 ~~~~~~~~~~~~~~f~i~~~~~~~~~ 519 (554)
+|+..|.+.++..++..
T Consensus 166 ---------~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 166 ---------GWRALFFISILPIIFAL 182 (405)
T ss_pred ---------cHHHHHHHHHHHHHHHH
Confidence 38999987665554443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-11 Score=122.51 Aligned_cols=157 Identities=17% Similarity=0.103 Sum_probs=119.3
Q ss_pred hhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCchh
Q 008778 350 AVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGSL 426 (554)
Q Consensus 350 ~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~ 426 (554)
.+....|.+.+++|.++. ....+...++..++.+..|+++||+|||+.+ ..+..+..++.++.... +.+.+
T Consensus 13 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~ 86 (379)
T TIGR00881 13 NFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFL------PIGLILCAIVNLFFGFSTSLWVM 86 (379)
T ss_pred hhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehh------HHHHHHHHHHHHHHHHhhhHHHH
Confidence 344456666777888754 3477888999999999999999999999865 55555566665555443 34456
Q ss_pred HHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhh-hHHHHHHhccCCCCCCCCcccccccchH
Q 008778 427 YIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSG-LLAGYLYDAQATPTAGGGNTCVGAHCYR 505 (554)
Q Consensus 427 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p-~i~g~i~~~~~~~~~~~~~~~~~~~~~~ 505 (554)
.+..++.|++.+...+...+++.|.+++++++.+.|+......+|..+ +| .+.+.+.+..+ |+
T Consensus 87 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~---------------~~ 150 (379)
T TIGR00881 87 AALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGL-LPPLVLFGIAELYS---------------WH 150 (379)
T ss_pred HHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHH-HHHHHHHHHHhcCC---------------ch
Confidence 677888899989888999999999999999999999999999999998 78 45555555543 89
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHh
Q 008778 506 LVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 506 ~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
..|++.+++.++..++.++..++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~ 173 (379)
T TIGR00881 151 WVFIVPGIIAIIVSLICFLLLRD 173 (379)
T ss_pred hHHHHHHHHHHHHHHHHheeeCC
Confidence 99988887776655555544433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.3e-11 Score=119.60 Aligned_cols=161 Identities=12% Similarity=0.119 Sum_probs=122.6
Q ss_pred cchhhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccC
Q 008778 346 GTGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALP 423 (554)
Q Consensus 346 ~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 423 (554)
.........+|.+.+++|.++.. ...+.+.++..++.+..|+++||+|||+.+ ..+..+..++..+....+.
T Consensus 17 ~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l------~~~~~~~~i~~~~~~~~~~ 90 (392)
T PRK10473 17 AGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVA------IPGAALFIIASLLCSLAET 90 (392)
T ss_pred HHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHH------HHHHHHHHHHHHHHHHhCc
Confidence 33344556688888889888643 366778888999999999999999998754 5555556666555544333
Q ss_pred -chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCccccccc
Q 008778 424 -GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAH 502 (554)
Q Consensus 424 -~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~ 502 (554)
..+.+..++.|++.+...+....++.|.+++++|+++.|+.+....++..+ +|.+.+.+.+..+
T Consensus 91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~-~~~i~~~l~~~~g-------------- 155 (392)
T PRK10473 91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVL-APVLGHLIMLKFP-------------- 155 (392)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcC--------------
Confidence 345566678888888777788889999999999999999999999999888 8988888777664
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHHh
Q 008778 503 CYRLVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 503 ~~~~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
|+..|++.+++.++..++..+..++
T Consensus 156 -~~~~~~~~~~~~~i~~~~~~~~~~~ 180 (392)
T PRK10473 156 -WQSLFYTMAAMGILVLLLSLFILKE 180 (392)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999888777766665544443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=100.00 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=102.5
Q ss_pred HHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhcc
Q 008778 60 IGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR 138 (554)
Q Consensus 60 ~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp 138 (554)
++.. .+++.|++.||+|||+.+..+..+..++.+...+. ++++.+.+.+++.|++.+...+.....+.|.+|
T Consensus 9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (141)
T TIGR00880 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------SNITVLIIARFLQGFGAAFALVAGAALIADIYP 81 (141)
T ss_pred hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence 3443 48999999999999999999999999998887776 688999999999999999999889899999998
Q ss_pred C-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH
Q 008778 139 R-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAI 190 (554)
Q Consensus 139 ~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 190 (554)
+ +|+++.++......+|..+++.+.+.+.+..+|+..+.......++..+..
T Consensus 82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (141)
T TIGR00880 82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILL 134 (141)
T ss_pred hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 5 699999999999999998888888877766667666666555554444433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-10 Score=117.26 Aligned_cols=155 Identities=15% Similarity=0.158 Sum_probs=117.1
Q ss_pred hccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-ccCchhHH
Q 008778 352 MNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-ALPGSLYI 428 (554)
Q Consensus 352 ~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~ 428 (554)
....|.+.+++|.++. +...+...++..++.+..|+++||+|||+.. ..+..+..++.+.... .+...+.+
T Consensus 35 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (406)
T PRK11551 35 GVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRIL------IVSVALFGLFSLATAQAWDFPSLLV 108 (406)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3445677788888754 3477788899999999999999999999865 4444445454444433 33445667
Q ss_pred HHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHH
Q 008778 429 GSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVF 508 (554)
Q Consensus 429 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f 508 (554)
..++.|++.+...+...+++.|.+++++++++.|+.+....+|..+ ++.+.+.+.+..+ |+..|
T Consensus 109 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~---------------~~~~~ 172 (406)
T PRK11551 109 ARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGAL-ASVIGVLAAGDAA---------------WRHIF 172 (406)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccccC---------------HHHHH
Confidence 7788899888888888899999999999999999999999999998 8888777766654 99999
Q ss_pred HHHHHHHHHHHHHHHHhHHh
Q 008778 509 VIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 509 ~i~~~~~~~~~~~~~~l~~~ 528 (554)
++.+++.++..++.....++
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~ 192 (406)
T PRK11551 173 YVGGVGPLLLVPLLMRWLPE 192 (406)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 98876665555444443333
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-10 Score=117.32 Aligned_cols=172 Identities=17% Similarity=0.146 Sum_probs=124.8
Q ss_pred hHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc-------hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHH
Q 008778 333 DFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV-------SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNA 405 (554)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-------~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~ 405 (554)
.+..+.+..++...........+|.+.+++|.+.. ....+...+...++.++.|+++||++||+.+ .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~ 88 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIML------L 88 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHH------H
Confidence 44555555555544445566778888888888743 2356677888999999999999999998754 4
Q ss_pred HHHHHHHHHHHHHHhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHH
Q 008778 406 ASQILMAVGYILMAVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLY 484 (554)
Q Consensus 406 ~~~~l~~~~~~l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~ 484 (554)
.+..+.+++..+.... +.+.+++..++.|++.+ ..+.....+.+.+++++++.+.|+......++..+ +|.+.+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~ 166 (408)
T PRK09874 89 RSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALL-GPLAGGLLA 166 (408)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4445555555444433 33455666677777644 34566677888999999999999999999999998 899999998
Q ss_pred hccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHH
Q 008778 485 DAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAA 527 (554)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~ 527 (554)
+..+ |+..|++.+++.+++.+...+..+
T Consensus 167 ~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~ 194 (408)
T PRK09874 167 DSYG---------------LRPVFFITASVLFLCFLVTLFCIR 194 (408)
T ss_pred HHhC---------------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8775 899999998887776665555443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=118.57 Aligned_cols=159 Identities=14% Similarity=0.054 Sum_probs=119.8
Q ss_pred chhhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cC
Q 008778 347 TGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LP 423 (554)
Q Consensus 347 ~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~ 423 (554)
....+...++.+.++++.++.. ...+.+.++..++.+..|.++||+|||+.+ ..+..+..++.+..... +.
T Consensus 28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~ 101 (406)
T PRK15402 28 ANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVM------LAGVAFFILTCLAILLAQSI 101 (406)
T ss_pred hhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHHHHHHHHHHHHHHHHccH
Confidence 3344556677788889887643 366788899999999999999999998754 44555555555444333 33
Q ss_pred chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccc
Q 008778 424 GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHC 503 (554)
Q Consensus 424 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~ 503 (554)
+.+++..++.|++.+...+...+.+.|.+++++++++.++......++..+ +|.+.+.+.+..+
T Consensus 102 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~~--------------- 165 (406)
T PRK15402 102 EQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLL-GPLVGAALIHVLP--------------- 165 (406)
T ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccC---------------
Confidence 455666778888877777777888899999999999999988888888887 8999999888765
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHH
Q 008778 504 YRLVFVIMAMACIVGFGLDILLAA 527 (554)
Q Consensus 504 ~~~~f~i~~~~~~~~~~~~~~l~~ 527 (554)
|++.|++.+++.+++.+...+..+
T Consensus 166 w~~~~~~~~~~~~~~~~~~~~~~~ 189 (406)
T PRK15402 166 WRGMFVLFAALAALSFFGLWRAMP 189 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCC
Confidence 899999988887777665544433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-10 Score=119.04 Aligned_cols=165 Identities=13% Similarity=0.086 Sum_probs=121.2
Q ss_pred hhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHH
Q 008778 331 TVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQ 408 (554)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 408 (554)
+|.|+.+.+..++............+.+.++++.++. +...+.+.+...+..++.|+++||++||+.+ ..+.
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl------~~~~ 75 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVM------FIAN 75 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhh------HHHH
Confidence 4567777777665554333344455566777777653 3466788899999999999999999999876 4555
Q ss_pred HHHHHHHHHHHhccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccC
Q 008778 409 ILMAVGYILMAVALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQA 488 (554)
Q Consensus 409 ~l~~~~~~l~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~ 488 (554)
.+.+++.+.+..... .++..++.|++.+...+...+++.|.+|+|+++++.|+......++..+ ||.++|.+.+..
T Consensus 76 ~~~~~~~~~~~~~~~--~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~-Gp~lgG~l~~~~- 151 (393)
T PRK11195 76 GIKLLGCLLMLFGIH--PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILL-GTVLGGALADPH- 151 (393)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-
Confidence 544444433322211 2455678899999999999999999999999999999999999999998 999999998864
Q ss_pred CCCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 008778 489 TPTAGGGNTCVGAHCYRLVFVIMAMACIVGFG 520 (554)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~ 520 (554)
|...+.+.+.+.+++.+
T Consensus 152 ---------------~~~~~~i~~~~~~~~~~ 168 (393)
T PRK11195 152 ---------------AEAALAVCALIYLLAAL 168 (393)
T ss_pred ---------------HHHHHHHHHHHHHHHHH
Confidence 67777766655544433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-10 Score=117.69 Aligned_cols=171 Identities=19% Similarity=0.252 Sum_probs=124.7
Q ss_pred hhhHHHHHHHHHhhhcchhhhhccHHHHH-hHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHH
Q 008778 331 TVDFWILFVSFLCGVGTGLAVMNNMGQIG-LALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAAS 407 (554)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~ 407 (554)
-|+ +.+....++.........+.++.++ ++.|.+... ...+...+...+.+++.|+++||+++|+.+ ..+
T Consensus 10 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l------~~~ 82 (400)
T PRK11646 10 LGK-YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMI------VTG 82 (400)
T ss_pred ccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHH------HHH
Confidence 344 3333444444444455566667665 467887643 366667788888899999999999998765 556
Q ss_pred HHHHHHHHHHHHhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhc
Q 008778 408 QILMAVGYILMAVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDA 486 (554)
Q Consensus 408 ~~l~~~~~~l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~ 486 (554)
..+.+++.+..... +.+.+++..++.|++.+...+...+++.+.+|+|+++++.|+.....++|..+ ||.+.|.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~i-g~~l~g~l~~- 160 (400)
T PRK11646 83 MLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVI-GALLGSWLLQ- 160 (400)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-
Confidence 66666666555443 33456667778888877767777888999999999999999999999999999 8999999883
Q ss_pred cCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 487 QATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
.+ |++.|++.++..++..++..+.
T Consensus 161 ~g---------------~~~~f~~~~~~~~~~~i~~~~~ 184 (400)
T PRK11646 161 YD---------------FRLVCATGAVLFVLAAAFNAWL 184 (400)
T ss_pred hh---------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 33 9999998887776665554443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.2e-11 Score=123.18 Aligned_cols=177 Identities=15% Similarity=0.116 Sum_probs=126.8
Q ss_pred HhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhH
Q 008778 326 FEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIW 403 (554)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~ 403 (554)
+.+.+++.++.+.+..++............|.+.++.+.++. +...+...++..++.++.|+++||++||+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l----- 85 (417)
T PRK10489 11 SLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLI----- 85 (417)
T ss_pred HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEE-----
Confidence 444567888777666655555444555667777777776653 3477788899999999999999999999866
Q ss_pred HHHHHHHHHHHHHHHH-----hccC-chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhh
Q 008778 404 NAASQILMAVGYILMA-----VALP-GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSG 477 (554)
Q Consensus 404 ~~~~~~l~~~~~~l~~-----~~~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p 477 (554)
..+..+.+++..... ..++ ..+.+..++.|++.+...+...+.+.+.+++++++++.++.....+++..+ ||
T Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~ 163 (417)
T PRK10489 86 -LLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVI-SP 163 (417)
T ss_pred -EehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHh-HH
Confidence 333333333322221 1122 344556667777777766777778899999999999999999999999998 99
Q ss_pred hHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 008778 478 LLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDIL 524 (554)
Q Consensus 478 ~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~ 524 (554)
.+.|.+.+..+ |++.|++.++..+++.++...
T Consensus 164 ~l~g~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 195 (417)
T PRK10489 164 ALGGLLIAAGG---------------VAWNYGLAAAGTFITLLPLLR 195 (417)
T ss_pred HHHHHHHHHHh---------------hHHHHHHHHHHHHHHHHHHHh
Confidence 99999998775 888888887776666554433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.5e-09 Score=106.59 Aligned_cols=144 Identities=20% Similarity=0.205 Sum_probs=102.4
Q ss_pred hhcHHHHHHhcCCChhhHHHHHHHHHHHHhhhhhhhhhcccCC-----chHHHHHHHHHHHHHHHHHHHHhhccCCCchH
Q 008778 34 SNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIP-----APIILLIGSLEGLVGYGAQWLVVSRKIQPLSY 108 (554)
Q Consensus 34 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~dr~G-----~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~ 108 (554)
....|.+++++|++++|.+.+.....+.-.+.|+.|.++|-+. ||+-++++.++.+++.+..+..... ..+.
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~---~~s~ 86 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS---ESSA 86 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc---cchh
Confidence 3456789999999999999988888787788999999999874 5555666666665555554443111 1355
Q ss_pred HHHHHHHHHHhchhhHhhhhHHHHHHhhcc---CCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHH
Q 008778 109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFR---RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAI 180 (554)
Q Consensus 109 ~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp---~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~ 180 (554)
....+.-++..+|.......+=..+.|.-. +.||...+.......+|++++..+.+.+.+....+..+.+..
T Consensus 87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~ 161 (433)
T PF03092_consen 87 AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA 161 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence 556666777888888888888788877763 346777778777788888887777777666554444444443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-10 Score=117.76 Aligned_cols=154 Identities=19% Similarity=0.092 Sum_probs=107.1
Q ss_pred ccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-----cCch
Q 008778 353 NNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-----LPGS 425 (554)
Q Consensus 353 ~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-----~~~~ 425 (554)
...|.+.++ |.++.. ...+...++..++.++.|+++||+|+|+.+ ..+.++.+++.+++... +...
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l------~~~~~~~~i~~~~~~~~~~~~~~~~~ 122 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGLILAAAVMLFMGFVPWATSSIAV 122 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhH------HHHHHHHHHHHHHHHhhhcccccHHH
Confidence 344555555 877543 477888999999999999999999998754 55555555555444331 1223
Q ss_pred hHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchH
Q 008778 426 LYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYR 505 (554)
Q Consensus 426 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~ 505 (554)
+++...+.|++.+...+.....+.+.+++++++++.|+.+....+|+.+.+|.+...+....+ |+
T Consensus 123 ~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g---------------w~ 187 (452)
T PRK11273 123 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND---------------WH 187 (452)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc---------------HH
Confidence 455667788888877777777888999999999999999999998876535544333322222 99
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHh
Q 008778 506 LVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 506 ~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
..|++.+++.++..++..++.++
T Consensus 188 ~~f~i~~~~~~~~~~l~~~~~~~ 210 (452)
T PRK11273 188 AALYMPAFAAILVALFAFAMMRD 210 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC
Confidence 99999887776665555554443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.1e-10 Score=117.38 Aligned_cols=167 Identities=17% Similarity=0.233 Sum_probs=124.8
Q ss_pred hHHHHHHHHHhhhcchhhhhccHHHHHh-HhCCCcch--hhHHHHHHHHhHhhHHhhcchhh-HhhhcCCCchhHHHHHH
Q 008778 333 DFWILFVSFLCGVGTGLAVMNNMGQIGL-ALGYVDVS--IFVSLTSIWGFFGRIISGSVSEY-FIKRAGTPRPIWNAASQ 408 (554)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr-~g~r~~~~~~~~~~~~~ 408 (554)
.+|.++...+.--..++.....++.|.+ ++|.++.. ...+.+.....+..+++|+++|| +|||+.+ ..+.
T Consensus 15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~------~~g~ 88 (489)
T PRK10207 15 PFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI------VLGA 88 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH------HHHH
Confidence 4566555555555556666667777765 57887543 35566666677777899999999 9999876 6777
Q ss_pred HHHHHHHHHHHhcc-C-chhHHHHHHHHhhhcccccchHHHHHHhhCCc--chhhHHHHHHhhhhhhHHHhhhhHHHHHH
Q 008778 409 ILMAVGYILMAVAL-P-GSLYIGSIIVGLCYGVRLAVTVPTASELFGLK--YYGLIYNILILNLPLGSFLFSGLLAGYLY 484 (554)
Q Consensus 409 ~l~~~~~~l~~~~~-~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~l~~p~i~g~i~ 484 (554)
+++.++.+++.... . ..+++..++.|++.|...+...+++.|.+|++ +++.++++.....++|.++ +|.+.|++.
T Consensus 89 ~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~-g~~l~g~l~ 167 (489)
T PRK10207 89 IVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLI-SLSLAPVIA 167 (489)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHH-HHHHHHHHH
Confidence 77777766655432 2 23456778889999999898899999999877 4578999999999999998 899999999
Q ss_pred hccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHH
Q 008778 485 DAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGL 521 (554)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~ 521 (554)
+..+ |++.|++.++..+++++.
T Consensus 168 ~~~g---------------w~~~F~i~~i~~~~~~~~ 189 (489)
T PRK10207 168 DKFG---------------YSVTYNLCGAGLIIALLV 189 (489)
T ss_pred HhhC---------------hHHHHHHHHHHHHHHHHH
Confidence 9875 999999876544444433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.3e-10 Score=115.28 Aligned_cols=161 Identities=15% Similarity=0.109 Sum_probs=122.1
Q ss_pred cchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhcc-
Q 008778 346 GTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVAL- 422 (554)
Q Consensus 346 ~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~- 422 (554)
.....+...+|.+.++++.+.. ....+.+.++..++++..|+++||+|||+.+ ..+..+.+++.+.....+
T Consensus 30 ~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l------~~~~~~~~~~~~~~~~a~~ 103 (413)
T PRK15403 30 LTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVL------ITGALIFTLACAATLFTTS 103 (413)
T ss_pred HHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHH------HHHHHHHHHHHHHHHHcCC
Confidence 3344556667788888888754 3477888899999999999999999999865 455555656655554433
Q ss_pred CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCccccccc
Q 008778 423 PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAH 502 (554)
Q Consensus 423 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~ 502 (554)
...+++..++.|++.+...+....++.|.+++++++++.++......++..+ +|.+.+.+.+..+
T Consensus 104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~lg~~l~~~~g-------------- 168 (413)
T PRK15403 104 MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPII-GPLSGAALMHFVH-------------- 168 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC--------------
Confidence 3456677788888776555566677889999999999999999999999998 8989888887765
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHHh
Q 008778 503 CYRLVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 503 ~~~~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
|++.|++.+++.+++.+..++..++
T Consensus 169 -w~~~f~~~~~~~~i~~~~~~~~lp~ 193 (413)
T PRK15403 169 -WKVLFAIIAVMGLIAFVGLLLAMPE 193 (413)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999988877776654443333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.1e-10 Score=116.34 Aligned_cols=164 Identities=17% Similarity=0.131 Sum_probs=109.9
Q ss_pred hhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCch
Q 008778 349 LAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGS 425 (554)
Q Consensus 349 ~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~ 425 (554)
+......+.+.+++|.+... ...+...++..++.++.|+++||+|+|+.. ..+.++.+++.++.... +...
T Consensus 53 ~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~------~~~~~~~~~~~~~~~~~~s~~~ 126 (476)
T PLN00028 53 FAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGS------AFLLMLTAPAVFCMSLVSSATG 126 (476)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHHHHHHHHHHHHHHHhcCHHH
Confidence 34445567777889987543 355677788899999999999999998754 44455555555544443 3344
Q ss_pred hHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchH
Q 008778 426 LYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYR 505 (554)
Q Consensus 426 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~ 505 (554)
+++..++.|++.+.. .....++.|.+++++||.+.|+.+...++|+.+ ++.+.+.+.+...... +.+..+|+
T Consensus 127 l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~-~~~~~~~i~~~~~~~~------~~~~~gWr 198 (476)
T PLN00028 127 FIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGV-TQLLMPLVFPLIKDAG------APSFTAWR 198 (476)
T ss_pred HHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcC------CcchhhhH
Confidence 556667778776653 334456789999999999999998888888877 6666655543211000 00012499
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 008778 506 LVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 506 ~~f~i~~~~~~~~~~~~~~l~ 526 (554)
+.|++.+++.++..++.+++.
T Consensus 199 ~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 199 IAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 999999988877666555443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-10 Score=122.83 Aligned_cols=167 Identities=17% Similarity=0.171 Sum_probs=129.2
Q ss_pred HHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHH
Q 008778 340 SFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYIL 417 (554)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l 417 (554)
..+.............|.+.+++|.+.. +...+.+.++..++.++.|+++||+|||+.+ ..+..+..++.++
T Consensus 10 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~ 83 (485)
T TIGR00711 10 GTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLF------LISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHH------HHHHHHHHHHHHH
Confidence 3333333333445567788888888753 4577888999999999999999999998765 5666666666665
Q ss_pred HHhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCc
Q 008778 418 MAVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGN 496 (554)
Q Consensus 418 ~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~ 496 (554)
.... +...+.+..++.|++.+...+...+++.|.+|+++|+++.|+......++..+ +|.+.+++.+..+
T Consensus 84 ~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~~-------- 154 (485)
T TIGR00711 84 CGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPAL-GPTLGGWIIENYH-------- 154 (485)
T ss_pred HhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhh-hhccHhHhccCcC--------
Confidence 5543 33456677888899988888888899999999999999999999999999998 8999999988765
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhHHh
Q 008778 497 TCVGAHCYRLVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 497 ~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
|++.|++.+.+.++..++..+..++
T Consensus 155 -------w~~~f~~~~~~~~~~~~~~~~~~~~ 179 (485)
T TIGR00711 155 -------WRWIFLINVPIGIIVVVVAFFILPR 179 (485)
T ss_pred -------ceehhhhhhHHHHHHHHHHHHHcCC
Confidence 9999999887777766655554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-10 Score=119.41 Aligned_cols=170 Identities=12% Similarity=0.102 Sum_probs=129.1
Q ss_pred HHHHHHhhhcchhhhhccHHHHHhHhCCCc--chhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHH
Q 008778 337 LFVSFLCGVGTGLAVMNNMGQIGLALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVG 414 (554)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~ 414 (554)
+++..++...-...+...+|++.+++|.+. .+...+.+.++..++.+..|+++||+|||+.+ ..+..+..++
T Consensus 11 ~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l------~~~~~~~~~~ 84 (495)
T PRK14995 11 IVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLL------MLGGTLFGLA 84 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHH
Confidence 344444444444455566888888998764 34577788888899999999999999999865 6666666677
Q ss_pred HHHHHhcc-CchhHHHHHHHHhhhcccccchHHHHHHhh-CCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCC
Q 008778 415 YILMAVAL-PGSLYIGSIIVGLCYGVRLAVTVPTASELF-GLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTA 492 (554)
Q Consensus 415 ~~l~~~~~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~ 492 (554)
.++....+ ...+++..++.|++.+...+.....+.+.+ ++++|+++.|+......+|..+ ||.+.|.+.+..+
T Consensus 85 ~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~-gp~lgg~l~~~~g---- 159 (495)
T PRK14995 85 SLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAF-GPLVGGILLEHFY---- 159 (495)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCC----
Confidence 66665433 445667778899988877776666666665 6789999999999999999998 9999999999876
Q ss_pred CCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHh
Q 008778 493 GGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 493 ~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
|++.|++...+.++.+++..+..++
T Consensus 160 -----------wr~~f~i~~~~~~~~~~l~~~~l~~ 184 (495)
T PRK14995 160 -----------WGSVFLINVPIVLVVMGLTARYVPR 184 (495)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999887777766665555443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.6e-10 Score=114.57 Aligned_cols=172 Identities=13% Similarity=0.125 Sum_probs=123.8
Q ss_pred HHHHHHHHhhhcchhhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHH
Q 008778 335 WILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMA 412 (554)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~ 412 (554)
+.......+...........+|.+.+++|.++.. ...+...++..++.+..|+++||+|||+.+ ..+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~------~~~~~~~~ 84 (394)
T PRK11652 11 FMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVI------LVGMSIFI 84 (394)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH------HHHHHHHH
Confidence 3333333344444445556678888899988643 467788899999999999999999998765 44555555
Q ss_pred HHHHHHHhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCC
Q 008778 413 VGYILMAVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPT 491 (554)
Q Consensus 413 ~~~~l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~ 491 (554)
++.+..... +...+.+..++.|++.+...+....+..|.++.++++.+.+..+....++..+ +|.+.+.+.+..+
T Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~g--- 160 (394)
T PRK11652 85 LGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLL-APLIGGLLTTLFG--- 160 (394)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccC---
Confidence 555444433 33455667778888877766666677888898899999999999998998888 8999999888765
Q ss_pred CCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHh
Q 008778 492 AGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 492 ~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
|+..|++.+++.++..+...+..++
T Consensus 161 ------------~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (394)
T PRK11652 161 ------------WRACYLFLLLLGAGVTFSMARWMPE 185 (394)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999998877666554444333333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-10 Score=115.61 Aligned_cols=156 Identities=13% Similarity=0.021 Sum_probs=114.6
Q ss_pred hhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-ccCchh
Q 008778 350 AVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-ALPGSL 426 (554)
Q Consensus 350 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~ 426 (554)
.+...+|.+.+++|.++.+ ...+.+.++..++++..|+++||+|||+.. .........+...... .+...+
T Consensus 9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~------~~~~~~~~~~~~~~~~~~~~~~l 82 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFL------FGSLATFAAAAGRLLDPFNYEWL 82 (368)
T ss_pred HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH------HHHHHHHHHHHHHHHHhccHHHH
Confidence 3456678888899988654 467788899999999999999999987643 2222222222222222 233466
Q ss_pred HHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHH
Q 008778 427 YIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRL 506 (554)
Q Consensus 427 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~ 506 (554)
.+..++.|++.+.. ........|.+|+++|+++.++......+|..+ ++.+.+.+.+..+ |+.
T Consensus 83 ~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l-~~~~~~~l~~~~g---------------Wr~ 145 (368)
T TIGR00903 83 LACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIF-ALAAGLKIYTAGG---------------LQL 145 (368)
T ss_pred HHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccc---------------hHH
Confidence 77788889888753 444455689999999999999999999999999 8989998887665 999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHh
Q 008778 507 VFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 507 ~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
.|.+.+++.++..++.++..++
T Consensus 146 ~f~~~~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 146 LIIPIAAVAAAGIILVLAALPA 167 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 9999888877776665555444
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-10 Score=116.32 Aligned_cols=156 Identities=21% Similarity=0.258 Sum_probs=117.9
Q ss_pred hhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCc
Q 008778 348 GLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPG 424 (554)
Q Consensus 348 ~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~ 424 (554)
.+......|.+.+++|.++. +...+.+.++..++++..|+++||+|||+.+ ..+..+.+++.+..... +..
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~------~~~~~~~~~~~~~~~~~~~~~ 92 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVA------MLGGILYGLGFTFYAIADSLA 92 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchh------HHhHHHHHHHHHHHHHHHHHH
Confidence 33445567777888898864 3477889999999999999999999999876 55666666666555443 334
Q ss_pred hhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccch
Q 008778 425 SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCY 504 (554)
Q Consensus 425 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~ 504 (554)
.+++...+.|++.+..++.....+.+.++ |+++.+.++......+|..+ ++++.+.+.+..+ |
T Consensus 93 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~---------------~ 155 (377)
T TIGR00890 93 ALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFI-LSPLITSVINLEG---------------V 155 (377)
T ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhH-HHHHHHHHHhccc---------------H
Confidence 55666778888888777766777788885 78999999999999999887 5557777766554 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 008778 505 RLVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 505 ~~~f~i~~~~~~~~~~~~~~l~ 526 (554)
++.|++.+++.++..+..+++.
T Consensus 156 ~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 156 PAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhe
Confidence 9999999888777666555543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=116.17 Aligned_cols=156 Identities=15% Similarity=0.255 Sum_probs=122.9
Q ss_pred hhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCchh
Q 008778 350 AVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGSL 426 (554)
Q Consensus 350 ~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~ 426 (554)
.+...+|.+.+++|.++. ....+...++..++++..|++.||+|||+.+ ..+.++.+++..+.... +...+
T Consensus 9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~------~~~~~~~~i~~~~~~~~~~~~~~ 82 (377)
T PRK11102 9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVI------LGGTLVFALAAVACALAQTIDQL 82 (377)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHH------HHHHHHHHHHHHHHHHHccHHHH
Confidence 455778888889998754 3467788899999999999999999988754 55555555665555443 33456
Q ss_pred HHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHH
Q 008778 427 YIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRL 506 (554)
Q Consensus 427 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~ 506 (554)
.+..++.|++.+...+...+++.|.+++++++++.|+......++..+ +|.+.+.+.+..+ |+.
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~---------------~~~ 146 (377)
T PRK11102 83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLL-APIIGGWLLVWFS---------------WHA 146 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC---------------hHH
Confidence 677788888888877888889999999999999999999999999998 8999999988775 899
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 008778 507 VFVIMAMACIVGFGLDILLAA 527 (554)
Q Consensus 507 ~f~i~~~~~~~~~~~~~~l~~ 527 (554)
.|++.+.+.++..+...+..+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~ 167 (377)
T PRK11102 147 IFWVLALAAILAAALVFFFIP 167 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 999888777776555544433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=110.42 Aligned_cols=147 Identities=14% Similarity=0.119 Sum_probs=113.2
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHH
Q 008778 39 ALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCM 117 (554)
Q Consensus 39 ~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l 117 (554)
.+++++|.+..+.+++......... ..++.|++.||+|+|+++..+..+..+......+. ++.+.+.+.+++
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 297 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD-------NSLWALLMLQLL 297 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3567899999999886544433333 47899999999999999888877666555444444 567878888999
Q ss_pred HhchhhHhhhhHHHHHHhhccCCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhh
Q 008778 118 GGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192 (554)
Q Consensus 118 ~Gig~g~~~~~~~~~i~~~fp~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (554)
.|++.+...+.....+.+.+|++++.++++......+|..+++.+.+.+.+..+++..+.+..+..++..+...+
T Consensus 298 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 298 NAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 999988888888888889999888899999998888999888888887777667777777776666665555443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-10 Score=115.53 Aligned_cols=150 Identities=14% Similarity=0.023 Sum_probs=105.0
Q ss_pred hHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHH
Q 008778 333 DFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQIL 410 (554)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l 410 (554)
.++...++.++..........+.+++.+++|.++. +...+.+.++..++.++.|++.||+|||+.. ..+..+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l------~~~~~~ 87 (402)
T TIGR00897 14 NLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTM------MIGLLL 87 (402)
T ss_pred hhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH------HHHHHH
Confidence 34444444444444434455677888888888754 4477888999999999999999999999865 444444
Q ss_pred HHHHHHHH---Hhc--cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHh
Q 008778 411 MAVGYILM---AVA--LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYD 485 (554)
Q Consensus 411 ~~~~~~l~---~~~--~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~ 485 (554)
.+++.+.. ... +...+++..++.|++.+...+.....+.+.+++++++++.|+.....++|..+.+|.+.+.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~ 167 (402)
T TIGR00897 88 WCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP 167 (402)
T ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44443322 121 2224455666778777666556667778888999999999999999999864338988888887
Q ss_pred ccC
Q 008778 486 AQA 488 (554)
Q Consensus 486 ~~~ 488 (554)
..+
T Consensus 168 ~~g 170 (402)
T TIGR00897 168 AFG 170 (402)
T ss_pred ccc
Confidence 765
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-10 Score=113.77 Aligned_cols=145 Identities=20% Similarity=0.216 Sum_probs=106.7
Q ss_pred hHHHHHHHHHhhhcchhhhhccHHH-HHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHH
Q 008778 333 DFWILFVSFLCGVGTGLAVMNNMGQ-IGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQI 409 (554)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 409 (554)
.+|..++.++........+....|. +.+++|.++.. ...+...++..++.+..|+++||+|||+.+ ..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~ 75 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTT------TLSLL 75 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHH
Confidence 4566666666666666666677775 55678988643 477788999999999999999999998765 55666
Q ss_pred HHHHHHHHHHhc--cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHh
Q 008778 410 LMAVGYILMAVA--LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYD 485 (554)
Q Consensus 410 l~~~~~~l~~~~--~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~ 485 (554)
+..++.++.... +...+++..++.|++.+ ......+++.|.+++++++.+.++.....++|..+ ++.+.+.+.+
T Consensus 76 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~i~~~l~~ 151 (366)
T TIGR00886 76 LLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGV-AQFVMPPIIG 151 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHH-HHHHHHHHHH
Confidence 666666555443 33455567777888744 34556778899999999999999999888888877 6767666554
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.1e-10 Score=114.48 Aligned_cols=141 Identities=19% Similarity=0.216 Sum_probs=111.6
Q ss_pred hhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCchhH
Q 008778 351 VMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGSLY 427 (554)
Q Consensus 351 ~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~ 427 (554)
..+..+.+.+++|.++. ....+...++..++.++.|+++||+|||+.+ ..+.++.+++....... +...++
T Consensus 37 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~l~ 110 (426)
T PRK12307 37 IFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLM------MWSIVAYSVGTGLSGLASGVIMLT 110 (426)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34445566677888754 3467788899999999999999999998765 55666666665554443 344667
Q ss_pred HHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHH
Q 008778 428 IGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLV 507 (554)
Q Consensus 428 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 507 (554)
+..++.|++.+..++....++.|.+++++|+++.|+......+|..+ ++.+.+.+.+..+ |++.
T Consensus 111 ~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~-~~~l~~~l~~~~~---------------w~~~ 174 (426)
T PRK12307 111 LSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNII-AAYFMPSFAEAYG---------------WRAA 174 (426)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHH-HHHHHHHHcccCC---------------HHHH
Confidence 77889999999888888899999999999999999999999999998 7888888877665 9999
Q ss_pred HHHHHH
Q 008778 508 FVIMAM 513 (554)
Q Consensus 508 f~i~~~ 513 (554)
|++...
T Consensus 175 f~i~~~ 180 (426)
T PRK12307 175 FFVGLL 180 (426)
T ss_pred HHHHHH
Confidence 987543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.9e-10 Score=109.80 Aligned_cols=165 Identities=24% Similarity=0.318 Sum_probs=128.2
Q ss_pred HHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHH
Q 008778 339 VSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYI 416 (554)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~ 416 (554)
...+.............+.+.++.|.++. ....+...+...++.+..|+++||+|||+.. ..+..+..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~------~~~~~~~~~~~~ 79 (352)
T cd06174 6 LGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVL------LLGLLLFALGSL 79 (352)
T ss_pred HHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhh------HHHHHHHHHHHH
Confidence 33333334444455667778888887754 3467788899999999999999999998865 566666666665
Q ss_pred HHHhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCC
Q 008778 417 LMAVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGG 495 (554)
Q Consensus 417 l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~ 495 (554)
..... +....++..++.|++.+...+...++..|.+++|+|++..++......+|..+ +|.+.+.+.|..+
T Consensus 80 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~------- 151 (352)
T cd06174 80 LLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALL-GPLLGGLLAESLG------- 151 (352)
T ss_pred HHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhh-------
Confidence 55443 34466677888999999988999999999999999999999999999999998 8999999998875
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 496 NTCVGAHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 496 ~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
|+..+++.+...+++.+...++
T Consensus 152 --------~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
T cd06174 152 --------WRWLFLILAILGLLLALLLLFL 173 (352)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998888777766655443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-10 Score=119.17 Aligned_cols=155 Identities=11% Similarity=-0.029 Sum_probs=112.0
Q ss_pred hccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHH-----h-ccC
Q 008778 352 MNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMA-----V-ALP 423 (554)
Q Consensus 352 ~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~-----~-~~~ 423 (554)
....|.+.+++|.++.. ...+.+.++..++.+..|+++||+|+|+.+ ..+.++.++....+. . ++.
T Consensus 49 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (467)
T PRK09556 49 KAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFL------PFLLILSAICMLGFGASLGSGSVSL 122 (467)
T ss_pred hhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchH------HHHHHHHHHHHHHHHHHHhcccchH
Confidence 34467778888887543 477788899999999999999999999865 333333333332222 1 223
Q ss_pred chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccc
Q 008778 424 GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHC 503 (554)
Q Consensus 424 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~ 503 (554)
..+.+..++.|++.+...+....++.+.+|++++|.+.|+......+|.++ ++.+..++.+.... .+
T Consensus 123 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l-~~~i~~~~~~~~~~------------~~ 189 (467)
T PRK09556 123 GLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAG-AGGVALWGANYFFD------------GH 189 (467)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhH-HHHHHHHHHHhhcc------------Cc
Confidence 355667778899988888888899999999999999999999999999998 78787766654310 02
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 008778 504 YRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 504 ~~~~f~i~~~~~~~~~~~~~~l 525 (554)
|+..|.+.+++.++..++.+++
T Consensus 190 ~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 190 VIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred chhHHHHHHHHHHHHHHHHHHh
Confidence 7788887776665554444443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=111.97 Aligned_cols=157 Identities=13% Similarity=0.125 Sum_probs=118.0
Q ss_pred chhhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cC
Q 008778 347 TGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LP 423 (554)
Q Consensus 347 ~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~ 423 (554)
....+...++.+.+++|.++.. ...+...++..++.+..|+++||++||+.+ ..+..+..++.+..... +.
T Consensus 21 ~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~ 94 (401)
T PRK11043 21 ATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVL------LAGLSLFALGSLGMLWVESA 94 (401)
T ss_pred HHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHH------HHHHHHHHHHHHHHHHhcCH
Confidence 3344455566677788887543 477788899999999999999999998765 44555555555444433 33
Q ss_pred chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccc
Q 008778 424 GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHC 503 (554)
Q Consensus 424 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~ 503 (554)
+.+.+..++.|++.+...+....++.|.+++++++...+..+....++..+ +|.+.+.+.+..+
T Consensus 95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~g--------------- 158 (401)
T PRK11043 95 AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPAL-APLLGAWLLNHFG--------------- 158 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC---------------
Confidence 355566677788777666667778899999998999999998888999998 8999999998875
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 008778 504 YRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 504 ~~~~f~i~~~~~~~~~~~~~~l 525 (554)
|+..|++.+++.++..+...++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 159 WQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHc
Confidence 9999998887777766555444
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=112.26 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=114.5
Q ss_pred hhcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 008778 34 SNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC 112 (554)
Q Consensus 34 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~ 112 (554)
+.+..+..++.+.+..+.+++.+...+..+ ..++.|++.||+|+|+.+..+.++.+++..+.+++ ++.+.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-------~~~~~~~ 319 (420)
T PRK09528 247 PNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-------TGPLEVS 319 (420)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-------ccHHHHH
Confidence 333333333446777788886665555554 48899999999999999999999999988887776 6788888
Q ss_pred HHHHHHhchhhHhhhhHHHHHHhhccCC-CccchHh-hHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHH-HHHHH
Q 008778 113 VFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGI-LKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV-VCLGA 189 (554)
Q Consensus 113 ~~r~l~Gig~g~~~~~~~~~i~~~fp~~-rg~a~gi-~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~ 189 (554)
+.+++.|++.+...+....++.+.+|++ |++..+. .+...++|.++++++.+.+.+..+|+..+....+..+ ..++.
T Consensus 320 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 399 (420)
T PRK09528 320 ILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLIS 399 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Confidence 8899999998888777888899999754 7777655 4566778998988888888877667776665444443 34444
Q ss_pred Hhhccc
Q 008778 190 IFFLRE 195 (554)
Q Consensus 190 ~~~~~~ 195 (554)
.+.+++
T Consensus 400 ~~~~~~ 405 (420)
T PRK09528 400 VFTLSG 405 (420)
T ss_pred HHHhcC
Confidence 444444
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=113.76 Aligned_cols=131 Identities=18% Similarity=0.048 Sum_probs=102.1
Q ss_pred hhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHH--hhc---------
Q 008778 34 SNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLV--VSR--------- 101 (554)
Q Consensus 34 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a--~~~--------- 101 (554)
......+.+.|+++.++.+++...+-++..+ ..+..+..-|.-|-+.+-.|.++++++++++++- ..+
T Consensus 117 ~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~ 196 (735)
T KOG3626|consen 117 NSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVI 196 (735)
T ss_pred hhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhh
Confidence 3444678899999999999988888888865 6788999999999999999999999999998764 000
Q ss_pred -----cC---------------------------CCc-hHHH-HHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchH
Q 008778 102 -----KI---------------------------QPL-SYWQ-MCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSG 146 (554)
Q Consensus 102 -----~~---------------------------~~~-s~~~-l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~g 146 (554)
.. .++ .+|. ++++.++.|+|....++....++-|...+ +-...+|
T Consensus 197 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlg 276 (735)
T KOG3626|consen 197 KQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLG 276 (735)
T ss_pred hccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHH
Confidence 00 001 1453 44579999999999999999999999964 5788999
Q ss_pred hhHhhhhhhHHHHHHHHH
Q 008778 147 ILKGYVGLSTAIFTDLCS 164 (554)
Q Consensus 147 i~~~~~~lg~~i~~~l~~ 164 (554)
+..+...+|++++-.+++
T Consensus 277 i~~~~~~lGPaiGfllgS 294 (735)
T KOG3626|consen 277 ILYSMAILGPAIGFLLGS 294 (735)
T ss_pred HHHHHHHhhhHHHHHHHH
Confidence 998887788766543433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.9e-10 Score=116.16 Aligned_cols=160 Identities=16% Similarity=0.259 Sum_probs=120.5
Q ss_pred hHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHH
Q 008778 333 DFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQIL 410 (554)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l 410 (554)
.+..+++..+.............+.+.+++|.++. ....+...++..++.+..|+++||+|||+.. ..+.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~ 94 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAM------VISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHHHHH
Confidence 33444444444444444444556777788888764 3477778889999999999999999998755 455555
Q ss_pred HHHHHHHHHhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCC
Q 008778 411 MAVGYILMAVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQAT 489 (554)
Q Consensus 411 ~~~~~~l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~ 489 (554)
.+++.+..... +...+++..++.|++.+...+....++.|.+++++++.+.|+......+|..+ +|.+.+.+.+..+
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~- 172 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVV-AAQVYSLVVPVWG- 172 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCC-
Confidence 55665555443 33456677888899888888888899999999999999999999999999998 8999999888765
Q ss_pred CCCCCCcccccccchHHHHHHHHHH
Q 008778 490 PTAGGGNTCVGAHCYRLVFVIMAMA 514 (554)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~f~i~~~~ 514 (554)
|++.|++..+.
T Consensus 173 --------------w~~~f~~~~~~ 183 (496)
T PRK03893 173 --------------WRALFFIGILP 183 (496)
T ss_pred --------------HHHHHHHHHHH
Confidence 99988775443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-09 Score=111.25 Aligned_cols=162 Identities=9% Similarity=0.090 Sum_probs=113.7
Q ss_pred hcHHHHHHhcCCCh--------hhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 008778 35 NYSDALKTLMNLTQ--------LELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQP 105 (554)
Q Consensus 35 ~~~~~i~~~~~~s~--------~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~ 105 (554)
.+.|...++.+.++ ++.+...+...+..+ ..++.|++.||+|+|+++.++.++..++..+.... ... .
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~-~~~--~ 305 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG-DPE--Y 305 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-Ccc--h
Confidence 44455556666543 444554444444444 47899999999999999999999888887666553 110 0
Q ss_pred chHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhH-hhhhhhHHHHHHHHHhhcCC------ChHHHHHH
Q 008778 106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILK-GYVGLSTAIFTDLCSALFAD------DPAKFLFM 177 (554)
Q Consensus 106 ~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~-~~~~lg~~i~~~l~~~l~~~------~~~~~~~~ 177 (554)
.+++.+++.+++.|++.+...+.....+.+++|+ +|+++.|+.. ...++|.++++++.+.+.+. .+|+..+.
T Consensus 306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~ 385 (418)
T TIGR00889 306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWL 385 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHH
Confidence 1356677789999999999888888999999985 6999999997 56788998888888877654 24776665
Q ss_pred HHHHH-HHHHHHHHhhccccCCC
Q 008778 178 LAIVP-FVVCLGAIFFLRETTPA 199 (554)
Q Consensus 178 ~~~~~-~~~~~~~~~~~~~~~~~ 199 (554)
...++ .+..++..++++++...
T Consensus 386 ~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 386 FFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHHHHHHHHHHhCCcccC
Confidence 55544 44444555556655333
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.3e-09 Score=99.57 Aligned_cols=96 Identities=17% Similarity=0.092 Sum_probs=74.8
Q ss_pred hhcHHHHHHhcCCChhhHHHHHHHHHHHH-hhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 008778 34 SNYSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC 112 (554)
Q Consensus 34 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~ 112 (554)
+.|.-.+-+++|++..|++.+....+... +++++.|.+.||+|||+..++-.++.+++.+..-. ++++.++
T Consensus 54 GpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~--------~~~~~L~ 125 (354)
T PF05631_consen 54 GPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS--------SNYPVLL 125 (354)
T ss_pred cchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc--------cccHHHH
Confidence 33333444689999999999776666666 45999999999999999998888888887765322 6899999
Q ss_pred HHHHHHhchhhHhhhhHHHH-HHhhc
Q 008778 113 VFLCMGGNSTTWMNTAVLVT-CIRNF 137 (554)
Q Consensus 113 ~~r~l~Gig~g~~~~~~~~~-i~~~f 137 (554)
++|++.|++....+.+--+. +.|+-
T Consensus 126 ~GRvlgGiaTSLLfS~FEsW~V~Eh~ 151 (354)
T PF05631_consen 126 LGRVLGGIATSLLFSAFESWMVHEHN 151 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988765443 45553
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.9e-08 Score=98.11 Aligned_cols=355 Identities=12% Similarity=0.039 Sum_probs=201.1
Q ss_pred hhhhhcHHHHHHh-cCCChhhHHH-HHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCch
Q 008778 31 YTFSNYSDALKTL-MNLTQLELNN-LSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLS 107 (554)
Q Consensus 31 ~~~~~~~~~i~~~-~~~s~~~~~~-~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s 107 (554)
=+=+...|.+.+. .|++..|+.- +.-+...++. +.++...+.|..|-|++++++.+...+...+.-+. ++
T Consensus 21 PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~-------~s 93 (412)
T PF01770_consen 21 PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG-------TS 93 (412)
T ss_pred CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------Cc
Confidence 3445667777775 8999999987 4434444443 47899999999999999999999888888887777 89
Q ss_pred HHHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcCCC--hHHHHHHHHHHHHH
Q 008778 108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADD--PAKFLFMLAIVPFV 184 (554)
Q Consensus 108 ~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~--~~~~~~~~~~~~~~ 184 (554)
.+.+-+.-++.|++.+.- .+..+++-...| ++-.++.+...++.-+|-.+++.+++.+.... ....+..+......
T Consensus 94 v~~mq~~q~~yg~~~a~e-vay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~ 172 (412)
T PF01770_consen 94 VLAMQLMQFFYGLATAAE-VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVS 172 (412)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 999999999999988774 455566666665 45688898888888888888888888776643 33444445555455
Q ss_pred HHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhh
Q 008778 185 VCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIK 264 (554)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (554)
++++..+++|.+++...- .
T Consensus 173 ~a~~~~~fLP~~~~S~~f-------------------------------------------------------------~ 191 (412)
T PF01770_consen 173 LALLIALFLPMPKRSLFF-------------------------------------------------------------H 191 (412)
T ss_pred HHHHHHHHcCCCCcccce-------------------------------------------------------------e
Confidence 555555555554432110 0
Q ss_pred hcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhh
Q 008778 265 SWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCG 344 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (554)
|++++... ..+.+.+++ .+.++++ .+.+++++ ..... .+ .....-..++++..+||......+...+.
T Consensus 192 ---r~~~~~~~-~~~~~~~~~-~~~~~~~--~~~~~~~~-~~~~~---~~-~~l~~l~~~~~~~y~~~~ll~WSlWWa~a 259 (412)
T PF01770_consen 192 ---RKPPAEQD-ANESESDKM-NESPESS--SSTEKSPS-TESSS---RK-SVLRLLWKDFKSCYSNPRLLLWSLWWAFA 259 (412)
T ss_pred ---ccCccccc-ccccccccc-ccccccc--cccccCcc-cccch---HH-HHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 11111000 000000000 0000000 00000000 00000 00 00000123456677777654444433334
Q ss_pred hcchhhhhccHHHHHhHhCCC-c----chhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHH
Q 008778 345 VGTGLAVMNNMGQIGLALGYV-D----VSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMA 419 (554)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~g~~-~----~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~ 419 (554)
..+...+.++.....++..-+ + .+.+-+...+.++++.+..|++..++.+... ..+....++.+..++++.
T Consensus 260 tcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~----l~l~~~S~l~a~~L~lm~ 335 (412)
T PF01770_consen 260 TCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGE----LALGVFSLLQAGLLFLMS 335 (412)
T ss_pred HhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 444444555555555554111 1 1234456667777888888888444443221 222333333344444444
Q ss_pred hc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhh
Q 008778 420 VA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPL 470 (554)
Q Consensus 420 ~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 470 (554)
.. +.+..++..++++..+-...++...-++.....+..|...|+.....-+
T Consensus 336 ~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~ 387 (412)
T PF01770_consen 336 FTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALV 387 (412)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHH
Confidence 33 3456677777887777776666666666666678888888877654433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.4e-09 Score=106.05 Aligned_cols=312 Identities=17% Similarity=0.156 Sum_probs=177.1
Q ss_pred HHHhhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhh--HhhhhHHHHHHhhc
Q 008778 60 IGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTT--WMNTAVLVTCIRNF 137 (554)
Q Consensus 60 ~~~~~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g--~~~~~~~~~i~~~f 137 (554)
.+.+.++..|.++||+|||..+.+..+...+......+. .+|.+. +.++..+ .......++++|.-
T Consensus 74 ~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~--------~~~~~~----~~~l~g~~~~~~s~~~a~vadis 141 (463)
T KOG2816|consen 74 LTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ--------GYWFFL----LLGLSGGFSAIFSVGFAYVADIS 141 (463)
T ss_pred HHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH--------HHHHhh----hcccccchhhhhhhhhhheeecc
Confidence 333448999999999999999999999888888877665 355444 4443333 34556677788888
Q ss_pred c-CCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHh-hccccCCCCCcchhhhhhhhhHhH
Q 008778 138 R-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF-FLRETTPASTVDEEKEEAKYFSII 215 (554)
Q Consensus 138 p-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (554)
. ++|....|+..+.++.+..+++.+.+.+....+-...+.++....++..+-.. +++|+..++..
T Consensus 142 ~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~------------- 208 (463)
T KOG2816|consen 142 SEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER------------- 208 (463)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc-------------
Confidence 5 46999999999988888888777777665554444444444433333332221 11111111000
Q ss_pred HHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCcc
Q 008778 216 NTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTE 295 (554)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (554)
+| .+...
T Consensus 209 --------------------------------------------------------------~~----~~~~~------- 215 (463)
T KOG2816|consen 209 --------------------------------------------------------------SD----ATLRE------- 215 (463)
T ss_pred --------------------------------------------------------------cc----ccccc-------
Confidence 00 00000
Q ss_pred ccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHH-HHhhhcchhhhhccHHHHHh-HhCCCcch--hhH
Q 008778 296 EVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVS-FLCGVGTGLAVMNNMGQIGL-ALGYVDVS--IFV 371 (554)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~ 371 (554)
.+.++.+++..+ +. ....++.-.+|..+.+... ++..........-....+.+ .+|+++.. ...
T Consensus 216 --~~~~~~~~~~~~------~~----~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~ 283 (463)
T KOG2816|consen 216 --LTPGSLDSSHVA------DA----FQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLL 283 (463)
T ss_pred --cCCCcccchhhh------hh----hhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHH
Confidence 000000000000 00 0000111112233332222 22221111111111222222 35666533 355
Q ss_pred HHHHHHHhHhhHHhh-cchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHhhhcccccchHHHHH
Q 008778 372 SLTSIWGFFGRIISG-SVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVAL-PGSLYIGSIIVGLCYGVRLAVTVPTAS 449 (554)
Q Consensus 372 ~~~~~~~~~g~~~~G-~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~l~g~~~g~~~~~~~~~~~ 449 (554)
+..+....+++++.. .+.-.++.|+.. ..+.....+....+.+.+ ++.++... +.....+...+..-+.+.
T Consensus 284 ~~~~~~~~i~~l~~~~~l~~~l~~~~~i------~lGl~~~~~~~~~~af~~~~w~~~~~~-v~~~~~~~~~pa~~s~~s 356 (463)
T KOG2816|consen 284 SLVSILGIISQLLLLPLLSSILGEKRLI------SLGLLSEFLQLLLFAFATETWMMFAAG-VVVALAGIVFPAIRAFAS 356 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHh------hHHHHHHHHHHHHHHHhccchhhhHHH-HHHHhhcchhHHHHhHHH
Confidence 666777777777665 666667776633 556665666666666654 44445444 444445666777888899
Q ss_pred HhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCC
Q 008778 450 ELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQAT 489 (554)
Q Consensus 450 ~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~ 489 (554)
...+++++|++.++...+..+.+.+ +|.+.+.++..+..
T Consensus 357 ~~v~~~e~g~v~~~is~i~~l~~~~-~~~~~~~i~~~t~~ 395 (463)
T KOG2816|consen 357 ILVSPEEQGKVFGIISGIEGLSGVV-SPALYGNIFALTLD 395 (463)
T ss_pred hhcccccccchhhHHHHHHHHhhhh-hHHHHHHHHHHHHH
Confidence 9999999999999999999999999 89999988766643
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.7e-10 Score=115.33 Aligned_cols=134 Identities=20% Similarity=0.306 Sum_probs=101.7
Q ss_pred hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-ccCc---hhHHHHHHHHhhhcccccch
Q 008778 369 IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-ALPG---SLYIGSIIVGLCYGVRLAVT 444 (554)
Q Consensus 369 ~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~---~~~~~~~l~g~~~g~~~~~~ 444 (554)
...+.+.++..++.++.|+++||+|||+.+ ..+..+..++..+... .+.. .+++..++.|++.+...+..
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 148 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSL------LIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALV 148 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhhHHHH------HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHH
Confidence 477788999999999999999999998765 4555555555554422 2222 56778889999999888888
Q ss_pred HHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHH---HHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHH
Q 008778 445 VPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLA---GYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGL 521 (554)
Q Consensus 445 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~---g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~ 521 (554)
..++.|.+++++|+.+.++.+....+|..+ ++.+. +...+.. +|++.|++.+...++..+.
T Consensus 149 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~---------------~w~~~f~~~~~~~~~~~~~ 212 (481)
T TIGR00879 149 PMYLSEIAPKALRGALTSLYQLAITFGILV-AYGFGSGKVSLNNTL---------------GWRIPLGLQLIPAGLLFLG 212 (481)
T ss_pred HHHHHccCChhhhhhhhhHHHHHHHHHHHH-HHHHHHHhhcCCCCc---------------cHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 88776 3332333 3999999976665555444
Q ss_pred HHH
Q 008778 522 DIL 524 (554)
Q Consensus 522 ~~~ 524 (554)
.++
T Consensus 213 ~~~ 215 (481)
T TIGR00879 213 LFF 215 (481)
T ss_pred Hhc
Confidence 333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-09 Score=112.14 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=111.6
Q ss_pred hhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccC-chhH
Q 008778 351 VMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALP-GSLY 427 (554)
Q Consensus 351 ~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~ 427 (554)
+..+.+++.+++|.++. ....+.+.+...++.++.|+++||++||+.+ ..+.++.+++.++....+. ..++
T Consensus 38 ~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~l~ 111 (455)
T TIGR00892 38 VTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVV------IAGGLLASLGMILASFSSNVIELY 111 (455)
T ss_pred hhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHH------HhhHHHHHHHHHHHHHhhhHHHHH
Confidence 34456777788888754 3466677777788899999999999998754 4455555555555444332 2333
Q ss_pred HH-HHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHH
Q 008778 428 IG-SIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRL 506 (554)
Q Consensus 428 ~~-~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~ 506 (554)
+. .++.|++.+...+....++.+.++ ++|+++.|+.+....++..+ +|.+.+.+.+..+ |++
T Consensus 112 ~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~-~~~l~~~l~~~~g---------------wr~ 174 (455)
T TIGR00892 112 LTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLST-LAPLNQYLFESFG---------------WRG 174 (455)
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHH-HHHHHHHHHHHhC---------------hHH
Confidence 33 356688877655656677788885 88999999999999999998 8989999998876 999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 008778 507 VFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 507 ~f~i~~~~~~~~~~~~~~l 525 (554)
+|++.+++.+++.+..++.
T Consensus 175 ~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 175 SFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999998877665554444
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=110.23 Aligned_cols=146 Identities=18% Similarity=0.167 Sum_probs=116.8
Q ss_pred hhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCchhH
Q 008778 351 VMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGSLY 427 (554)
Q Consensus 351 ~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~ 427 (554)
....+|.+.+++|.++. +...+.+.++..++.+..|++.||+|||+.+ ..+..+.+++.+..... +...+.
T Consensus 28 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l------~~~~~l~~~~~~~~~~a~~~~~ll 101 (393)
T PRK09705 28 VGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSV------AISLLLIAVGALMRELYPQSALLL 101 (393)
T ss_pred cchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHH------HHHHHHHHHHHHHHHHCcchHHHH
Confidence 44567778888888754 4477888899999999999999999999876 77777788887776654 345667
Q ss_pred HHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHH
Q 008778 428 IGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLV 507 (554)
Q Consensus 428 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 507 (554)
+..++.|++.+...+..+.++.+.++ ++++.+.|+.......|..+ ++.+.+.+.+.... |+..
T Consensus 102 ~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~-g~~~~~~l~~~~~~--------------w~~~ 165 (393)
T PRK09705 102 SSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGL-GAAITPWLVQHSET--------------WYQT 165 (393)
T ss_pred HHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHhcCC--------------HHHH
Confidence 78889999999888888889999986 88999999999998899998 88888888877532 8888
Q ss_pred HHHHHHHHHHH
Q 008778 508 FVIMAMACIVG 518 (554)
Q Consensus 508 f~i~~~~~~~~ 518 (554)
+.+.++..++.
T Consensus 166 ~~~~~~~~~~~ 176 (393)
T PRK09705 166 LAWWALPAVVA 176 (393)
T ss_pred HHHHHHHHHHH
Confidence 77666554433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.5e-10 Score=112.16 Aligned_cols=151 Identities=13% Similarity=0.084 Sum_probs=107.7
Q ss_pred hhhHHHHHHHHHhhhcchhhhhccHHHHH-hHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHH
Q 008778 331 TVDFWILFVSFLCGVGTGLAVMNNMGQIG-LALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAAS 407 (554)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~ 407 (554)
++.++.+.+..+............+|.+. +++|.+.. +...+.+.+...++++..|+++||+|||+.+ ..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l------~~~ 87 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSA------LQG 87 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHH------HHH
Confidence 44556665555555444445556667655 56888754 4477888999999999999999999999865 333
Q ss_pred HHHHHHHHH---HHHh------ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhh
Q 008778 408 QILMAVGYI---LMAV------ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGL 478 (554)
Q Consensus 408 ~~l~~~~~~---l~~~------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~ 478 (554)
.....++.+ +... .+...+++..++.|++.+...+...+++.|.+++|+|+++.|+.......+..+ +|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~-g~~ 166 (392)
T PRK12382 88 MLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAA-GAP 166 (392)
T ss_pred HHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHH-HHH
Confidence 333322221 1111 112245566778888888777777788899999999999999999888888888 899
Q ss_pred HHHHHHhccC
Q 008778 479 LAGYLYDAQA 488 (554)
Q Consensus 479 i~g~i~~~~~ 488 (554)
+.+.+.+..+
T Consensus 167 ~~~~l~~~~g 176 (392)
T PRK12382 167 LGLLLHSHFG 176 (392)
T ss_pred HHHHHHhccC
Confidence 9998888765
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-09 Score=108.49 Aligned_cols=186 Identities=13% Similarity=0.086 Sum_probs=120.8
Q ss_pred hhhHHHHHHHHHhhhcchhhhhccHHHHHh-HhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHH
Q 008778 331 TVDFWILFVSFLCGVGTGLAVMNNMGQIGL-ALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAAS 407 (554)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~ 407 (554)
++.++..++.+..++..-+.+....+.+.+ ++++++.+ ...++..+...++++..|++.||+|.|+.. ..+
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~------~~~ 106 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWT------VFS 106 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHH
Confidence 356777777766666555444444555555 68888654 367778888899999999999999998765 444
Q ss_pred HHHHHHHHHHHHhc------cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHH
Q 008778 408 QILMAVGYILMAVA------LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAG 481 (554)
Q Consensus 408 ~~l~~~~~~l~~~~------~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g 481 (554)
..+..+..+..... +...+++..++.|++ |..++.....+.+.+|++++|++.|+.....++|..+ ++.+..
T Consensus 107 ~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l-~~~l~p 184 (462)
T PRK15034 107 TAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSV-MQLVAP 184 (462)
T ss_pred HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHH-HHHHHH
Confidence 55555555444432 233566777888887 6677888888999999999999999997666666654 343333
Q ss_pred H-----HHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhH
Q 008778 482 Y-----LYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 482 ~-----i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~ 526 (554)
. +.+..+..... ....+..+++.++++...+.++..++.++..
T Consensus 185 ~~i~~~l~~~~G~~~~~--~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~ 232 (462)
T PRK15034 185 LVIFVPVFAFLGVNGVP--QADGSVMSLANAAWIWVPLLAIATIAAWSGM 232 (462)
T ss_pred HHHHHHHHHHhcccccc--ccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3 22333211000 0000133577888777777776666666553
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=110.79 Aligned_cols=170 Identities=13% Similarity=0.109 Sum_probs=114.7
Q ss_pred hhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHH
Q 008778 331 TVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAAS 407 (554)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~ 407 (554)
||.+|.+....++.......+..+++.+.++ +|+++. ....+...+...++++..|+++||+|||+.+ ..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~------~~~ 74 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHL------LWI 74 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHH
Confidence 5788988877777766666677788887764 788754 4478889999999999999999999998765 222
Q ss_pred HHHHHHH---HHHHHhcc-----C-chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhh
Q 008778 408 QILMAVG---YILMAVAL-----P-GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGL 478 (554)
Q Consensus 408 ~~l~~~~---~~l~~~~~-----~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~ 478 (554)
....++. +..+.... . ....+..++.|++++...+....+..+.. ++++..+|......++|..+ +|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~-g~~ 151 (396)
T TIGR00882 75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWAL-CAS 151 (396)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHH-HHH
Confidence 1111111 11111111 1 11233345666777766666666666643 33456777888888999998 899
Q ss_pred HHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 479 LAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 479 i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
+.|.+.+. + |+..|++.+++.++..++.+..
T Consensus 152 ~~g~l~~~-~---------------~~~~f~~~~~~~~~~~~~~~~~ 182 (396)
T TIGR00882 152 IAGILFSI-D---------------PQIVFWLGSGFALILMLLLMFA 182 (396)
T ss_pred HHhhhhcc-C---------------chHHHHHHHHHHHHHHHHHHHh
Confidence 98888764 3 8899999887777766554433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.7e-09 Score=107.34 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=115.5
Q ss_pred hcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 008778 35 NYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV 113 (554)
Q Consensus 35 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~ 113 (554)
.+.|.+.++.|.+ +.++......++.+. .++.|++.||+|+|+.+..+..+..++..+..+. ++.+.+++
T Consensus 237 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 307 (399)
T PRK05122 237 TFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-------PSPWMALI 307 (399)
T ss_pred HHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHH
Confidence 3445444555653 344444444455544 7899999999999999999988888888777665 67777788
Q ss_pred HHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhh
Q 008778 114 FLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192 (554)
Q Consensus 114 ~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (554)
..++.|++.+..++.....+.+.+|+ +||++.|+......+|..+++++.+.+.+..+++..+.+..+..++.++..+.
T Consensus 308 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 308 GAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999998888777777888874 69999999999989998888888887777667777777777666666665555
Q ss_pred ccccC
Q 008778 193 LRETT 197 (554)
Q Consensus 193 ~~~~~ 197 (554)
+++.+
T Consensus 388 ~~~~~ 392 (399)
T PRK05122 388 LYRRA 392 (399)
T ss_pred hcccc
Confidence 54433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.05 E-value=5e-09 Score=104.90 Aligned_cols=157 Identities=11% Similarity=0.101 Sum_probs=123.5
Q ss_pred HHHHHhHhCCCcch---hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHH
Q 008778 355 MGQIGLALGYVDVS---IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGSLYIGS 430 (554)
Q Consensus 355 ~~~~~~~~g~~~~~---~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~ 430 (554)
.|.+.+++|+++.. .+.+.+..+..+..+.+|+++||+|.|+.+ ..+.+...+..+++... +...+.+.-
T Consensus 49 ~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL------~l~~l~Wsl~t~L~~fa~Sl~~L~i~R 122 (511)
T TIGR00806 49 TPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVL------VLQALSFVCVWLLLLLGTSVWHMQLME 122 (511)
T ss_pred HHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566688998655 478888999999999999999999999865 55555555555555443 345677888
Q ss_pred HHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHH
Q 008778 431 IIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVI 510 (554)
Q Consensus 431 ~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i 510 (554)
+++|++.|..+ ....++.+.+|+++|+++.|+.+....+|.++ ++++.+.+. ..+. ..|....++
T Consensus 123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~I-a~~L~qll~-s~gW------------r~y~~Ln~I 187 (511)
T TIGR00806 123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFL-SSVLGQLLV-TLGW------------ISYSTLNII 187 (511)
T ss_pred HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hcCc------------hhHHHHHHH
Confidence 99999999988 88899999999999999999999999999999 888888844 4442 136777778
Q ss_pred HHHHHHHHHHHHHHhHHhhhhh
Q 008778 511 MAMACIVGFGLDILLAAKTKNI 532 (554)
Q Consensus 511 ~~~~~~~~~~~~~~l~~~~~~~ 532 (554)
.....+++++..+++...+|..
T Consensus 188 sl~s~~~a~~~a~~LP~~~~sl 209 (511)
T TIGR00806 188 SLVFMTFSVFLALFLKRPKRSL 209 (511)
T ss_pred HHHHHHHHHHHHHhCCCCchhh
Confidence 8878888888888887555543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=111.18 Aligned_cols=177 Identities=21% Similarity=0.231 Sum_probs=122.4
Q ss_pred hhhhhHHHHHHHHHhhhcchh----hhhccHHHHHhHhCCCcc-hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhH
Q 008778 329 MWTVDFWILFVSFLCGVGTGL----AVMNNMGQIGLALGYVDV-SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIW 403 (554)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~ 403 (554)
+++|+++..+..+.+.....+ .....++.+.+++|-++. ....+...++..++.++.|.++|.+|||+..
T Consensus 37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~----- 111 (599)
T PF06609_consen 37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFF----- 111 (599)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHH-----
Confidence 355666655544443332222 122345677788887654 4466677888999999999999999999765
Q ss_pred HHHHHHHHHHHHHHHHhccC-chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHH
Q 008778 404 NAASQILMAVGYILMAVALP-GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGY 482 (554)
Q Consensus 404 ~~~~~~l~~~~~~l~~~~~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~ 482 (554)
..+.++..++.++....++ ..+..+..+.|++.|... .....++|..|.|.|+...++.....-+.... +|.+...
T Consensus 112 -i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~-~~~ia~~ 188 (599)
T PF06609_consen 112 -IIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWI-SPLIAQL 188 (599)
T ss_pred -HHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcc-cHHHHHH
Confidence 7788888889888776554 466778889999877765 34556899999999988777666544443434 5655544
Q ss_pred HHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHh
Q 008778 483 LYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 483 i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
+.... +|||.|++..++..+++++..+++++
T Consensus 189 ~~~~~---------------~WRw~~~~~~i~~~i~~vl~~~fY~P 219 (599)
T PF06609_consen 189 FAAHS---------------GWRWIFYIFIIWSGIALVLIFFFYFP 219 (599)
T ss_pred hccCC---------------CcchHHHHHHHHHHHHHHHHHHHhCC
Confidence 43322 39999999999888887776655543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.2e-10 Score=115.79 Aligned_cols=143 Identities=13% Similarity=0.144 Sum_probs=111.2
Q ss_pred hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh---ccCchhHHHHHHHHhh
Q 008778 362 LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV---ALPGSLYIGSIIVGLC 436 (554)
Q Consensus 362 ~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~l~g~~ 436 (554)
++.+.. +...+.+.++..++.+..|++.||+|+|+.+ ..+.++.+++.++... .+...+++..++.|++
T Consensus 71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSI------GIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLA 144 (465)
T ss_pred CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhh------HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHh
Confidence 444433 3477888899999999999999999999865 4444444444444322 2234566778899999
Q ss_pred hcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhcc-CCCCCCCCcccccccchHHHHHHHHHHH
Q 008778 437 YGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQ-ATPTAGGGNTCVGAHCYRLVFVIMAMAC 515 (554)
Q Consensus 437 ~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~-~~~~~~~~~~~~~~~~~~~~f~i~~~~~ 515 (554)
.+...+....++.|.+|+++++++.|+......+|..+ +|.+.+.+.+.. + |+..|++.+++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i-~~~l~~~l~~~~~g---------------w~~~f~i~~~~~ 208 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFI-FLPISGWLCESWGG---------------WPMIFYVFGIVG 208 (465)
T ss_pred cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCC---------------CCeehhhhhHHH
Confidence 99999999999999999999999999999999999998 899999998874 4 999999988877
Q ss_pred HHHHHHHHHhH
Q 008778 516 IVGFGLDILLA 526 (554)
Q Consensus 516 ~~~~~~~~~l~ 526 (554)
++..++.+.+.
T Consensus 209 ~~~~~~~~~~~ 219 (465)
T TIGR00894 209 CAWSLLWFVFP 219 (465)
T ss_pred HHHHHHHHHHh
Confidence 66655544443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.4e-09 Score=104.38 Aligned_cols=142 Identities=11% Similarity=0.083 Sum_probs=115.6
Q ss_pred hhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 008778 32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ 110 (554)
Q Consensus 32 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~ 110 (554)
.+..+.|.+.+|+|.+..+.+.+.....+..+. .++++++.||+|+|+++.++.+...+...+.+++ ++.+.
T Consensus 223 ~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-------~~~~~ 295 (382)
T TIGR00902 223 AYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-------EAFPL 295 (382)
T ss_pred HHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-------hhHHH
Confidence 333455666678999999999976666666654 7899999999999999999999999999888877 78999
Q ss_pred HHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhH-hhhhhhHHHHHHHHHhhcCCChHHHHHHHHHH
Q 008778 111 MCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILK-GYVGLSTAIFTDLCSALFADDPAKFLFMLAIV 181 (554)
Q Consensus 111 l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~-~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~ 181 (554)
+++.++++|++.+...+....++.+. |+ +|++..+++. ...++|..+++.+++.+.+..+...++..+.+
T Consensus 296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~ 367 (382)
T TIGR00902 296 IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAII 367 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999999988 75 6899999986 46788988888888888776665444444443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-09 Score=91.82 Aligned_cols=131 Identities=16% Similarity=0.260 Sum_probs=102.5
Q ss_pred HHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHhhhcccccchHHHHHHh
Q 008778 373 LTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-ALPGSLYIGSIIVGLCYGVRLAVTVPTASEL 451 (554)
Q Consensus 373 ~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~ 451 (554)
...++..++.+..|++.||++||+.. ..+..+..++.+.... .+.....+..++.|++.+...+....++.|.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVL------LVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADI 79 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHH------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45677888999999999999998754 4444444455444433 2334556677888888888888888999999
Q ss_pred hCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 452 FGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 452 ~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
+++++++++.|+.+....++..+ +|.+.+.+.+..+ |+..|.+.+.+.+++.+...++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 80 YPPEERGVALGLMSAGIALGPLL-GPPLGGVLAQFLG---------------WRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred CChhhhhHHHHHHHHhHHHHHHH-hHHhHHHHhcccc---------------hHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998 8999999987765 8888988887777766655544
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-09 Score=111.73 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=101.9
Q ss_pred hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc----------cC---chhHHHHHHHHh
Q 008778 369 IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA----------LP---GSLYIGSIIVGL 435 (554)
Q Consensus 369 ~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~----------~~---~~~~~~~~l~g~ 435 (554)
...+.+.++..++.++.|+++||+|||+.+ ..+..+++++.+..... +. ..+++..++.|+
T Consensus 59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~------~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~ 132 (479)
T PRK10077 59 FCVASALIGCIIGGALGGYCSNRFGRRDSL------KIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI 132 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhh
Confidence 477888999999999999999999999865 45445555444433221 11 134567789999
Q ss_pred hhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHH
Q 008778 436 CYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMAC 515 (554)
Q Consensus 436 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~ 515 (554)
+.|...+..++++.|.+|+++||.+.|+......+|..+ ++.+.+.+.+..... -.+..+|++.|++.++..
T Consensus 133 ~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~-------~~~~~gWr~~f~~~~~~~ 204 (479)
T PRK10077 133 GVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLV-VYFVNYFIARSGDAS-------WLNTDGWRYMFASEAIPA 204 (479)
T ss_pred hHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhccCccc-------ccccCChHHHHHHHHHHH
Confidence 999999999999999999999999999999988898887 675554443221100 001124999999888777
Q ss_pred HHHHHHHHH
Q 008778 516 IVGFGLDIL 524 (554)
Q Consensus 516 ~~~~~~~~~ 524 (554)
++..+...+
T Consensus 205 ~~~~~~~~~ 213 (479)
T PRK10077 205 LLFLMLLYF 213 (479)
T ss_pred HHHHHHHHc
Confidence 666554333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-10 Score=111.52 Aligned_cols=150 Identities=11% Similarity=0.108 Sum_probs=122.1
Q ss_pred HhCCCc--chhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHhhh
Q 008778 361 ALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGSLYIGSIIVGLCY 437 (554)
Q Consensus 361 ~~g~~~--~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~l~g~~~ 437 (554)
.++.++ ...+.+.+.+...+..++.|++.||+.|++.+ .++..+..++.+...+. +-+.+.+.-.+.|+|-
T Consensus 62 ~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~------~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGe 135 (493)
T KOG1330|consen 62 YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVI------AVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGE 135 (493)
T ss_pred hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEE------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 345554 34566778888899999999999999999877 66666665555544433 3346677888999999
Q ss_pred cccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHH
Q 008778 438 GVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIV 517 (554)
Q Consensus 438 g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~ 517 (554)
....++.+++++|.++.++|++.+++.+.+..+|+.+ |-+..+.+.+.++. |+++|++.+++.++
T Consensus 136 As~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsgl-G~vvgs~va~~~~~--------------Wr~af~~~avl~vi 200 (493)
T KOG1330|consen 136 ASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGL-GYVVGSVVASLTFW--------------WRWAFRGSAVLGVI 200 (493)
T ss_pred hhhcccchhHhhhcCcchhhhHHHHHhhhhcccccce-eEEeeeeeccCccc--------------eEEEEEeehHHHHH
Confidence 9999999999999999999999999999999999998 88788888888765 99999999999999
Q ss_pred HHHHHHHhHHhhhh
Q 008778 518 GFGLDILLAAKTKN 531 (554)
Q Consensus 518 ~~~~~~~l~~~~~~ 531 (554)
..++..++.++.+|
T Consensus 201 ~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 201 VGLLVFLFVREPER 214 (493)
T ss_pred HHHHHHhhccCccc
Confidence 88887777655443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.4e-09 Score=106.17 Aligned_cols=150 Identities=12% Similarity=0.012 Sum_probs=115.0
Q ss_pred hhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHH
Q 008778 331 TVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQ 408 (554)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 408 (554)
++.+|.+....++...........+|.+.+++|.++. +...+.+.++..++++..|+++||+|||+.. ..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~------~~~~ 78 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSY------YLAS 78 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHH
Confidence 3456777776666555555566778889889988754 4477888999999999999999999999865 5555
Q ss_pred HHHHHHHHHHHhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhcc
Q 008778 409 ILMAVGYILMAVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQ 487 (554)
Q Consensus 409 ~l~~~~~~l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~ 487 (554)
.+.+++....... +.+.+.+..++.|++.+...+.....+.+..++++++++.|......++|..+ ||.+.+.+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~ 157 (381)
T PRK03633 79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVL-GQLLVSKVSTEL 157 (381)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccccc
Confidence 5566665554443 33456677788898888777766667778888899999999999999999998 898988876653
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.9e-09 Score=107.23 Aligned_cols=181 Identities=14% Similarity=0.011 Sum_probs=124.7
Q ss_pred HHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHH
Q 008778 334 FWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILM 411 (554)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~ 411 (554)
++.++..++.............|.+.+++|.++. +...+...++..++.+..|++.||+|+|+.. ..+..++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~------~~g~~l~ 78 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGI------LLGLFLY 78 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHHHH
Confidence 4444444443333322333556667677888754 3477888999999999999999999999876 6677777
Q ss_pred HHHHHHHHh---c-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhcc
Q 008778 412 AVGYILMAV---A-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQ 487 (554)
Q Consensus 412 ~~~~~l~~~---~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~ 487 (554)
+++.++... . +...+.+..++.|++.|...+...+++.+..+++++++..++.+...++|..+ +|.+.+.+....
T Consensus 79 ~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-g~~i~~~l~~~~ 157 (410)
T TIGR00885 79 ALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSII-GMVVAQQLILSN 157 (410)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcC
Confidence 777665432 1 22345667788899999988888889999998899999999999999999998 898988876432
Q ss_pred CCCCCCCC----c------c-cccccchHHHHHHHHHHHHHHHHH
Q 008778 488 ATPTAGGG----N------T-CVGAHCYRLVFVIMAMACIVGFGL 521 (554)
Q Consensus 488 ~~~~~~~~----~------~-~~~~~~~~~~f~i~~~~~~~~~~~ 521 (554)
........ . + -.+..+|+.+|.+.+++.++..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 158 LPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred CccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000000 0 0 001235899998888766655443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-09 Score=114.56 Aligned_cols=166 Identities=10% Similarity=0.060 Sum_probs=120.1
Q ss_pred ccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhcc--------
Q 008778 353 NNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVAL-------- 422 (554)
Q Consensus 353 ~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~-------- 422 (554)
..++++-++++++.. ..+.+.+.++..++.+..|++.||.+||+.+ ..+.++++++.+++..++
T Consensus 54 ~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i------~~g~ll~~lg~ll~alphf~~~~y~~ 127 (633)
T TIGR00805 54 SSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVI------GIGCAIMGLGSFLLSLPHFLSGRYSY 127 (633)
T ss_pred hhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEE------EecHHHHHHHHHHHhChHHhcCCccc
Confidence 345566667888754 4477889999999999999999999998876 566666777766554321
Q ss_pred -------------------------------------------Cc-hhHHHHHHHHhhhcccccchHHHHHHhhCCcchh
Q 008778 423 -------------------------------------------PG-SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYG 458 (554)
Q Consensus 423 -------------------------------------------~~-~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g 458 (554)
.. .+++..++.|++.+..++...+++.|.+++++++
T Consensus 128 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~ 207 (633)
T TIGR00805 128 STTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP 207 (633)
T ss_pred cccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH
Confidence 11 3456788999999999999999999999999999
Q ss_pred hHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCC----CCCccccc---ccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 459 LIYNILILNLPLGSFLFSGLLAGYLYDAQATPTA----GGGNTCVG---AHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 459 ~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~----~~~~~~~~---~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
...|+......+|..+ |+++++.+.+...+-.. ....+..+ ..+|+..|++.+++.++..+..+++
T Consensus 208 ~~~~i~~~~~~iG~~l-G~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 208 LYIGILESIAVFGPAF-GYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHHHHHHHHhhhHH-HHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998 99999988865421000 00001111 1247778888887777665544443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-08 Score=104.07 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=93.4
Q ss_pred HHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccC---------chhHHHHHHHHhhhcccc
Q 008778 371 VSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALP---------GSLYIGSIIVGLCYGVRL 441 (554)
Q Consensus 371 ~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~---------~~~~~~~~l~g~~~g~~~ 441 (554)
++...++..+|.++.|+++||+|||+.+ ..+..++.++.+....... ..+.+..++.|++.|..+
T Consensus 69 ~~~~~~~~~ig~~~~G~l~Dr~Grr~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~ 142 (432)
T PRK10406 69 FAAGFLMRPIGGWLFGRIADKHGRKKSM------LISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEY 142 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHH------HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 3444566669999999999999999866 5666666666655543221 135677789999999999
Q ss_pred cchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHH
Q 008778 442 AVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVG 518 (554)
Q Consensus 442 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~ 518 (554)
+...+++.|.+|+++||...++.......|.++ ++.+...+....... .....+|+..|++.++..++.
T Consensus 143 ~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~-------~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 143 GTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL-ALLVVVVLQQTLEDA-------ELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred hhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHH-------HHhccchHHHHHHHHHHHHHH
Confidence 999999999999999999999887777777776 665544433211000 000023999998877665543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-08 Score=101.90 Aligned_cols=146 Identities=12% Similarity=-0.060 Sum_probs=100.9
Q ss_pred hhhhhcHHHHH-HhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHH-HHHHHhhccCCCch
Q 008778 31 YTFSNYSDALK-TLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYG-AQWLVVSRKIQPLS 107 (554)
Q Consensus 31 ~~~~~~~~~i~-~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~-~~~~a~~~~~~~~s 107 (554)
+....+.|.+. +++|.+..+.+++.....+... ..++.|++.||+|||+.+..+..+..+..+ ........ ++
T Consensus 236 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 311 (394)
T TIGR00883 236 YLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDS----GS 311 (394)
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcC----Cc
Confidence 44555566654 7789999998886655555554 488999999999999987766554444332 21111111 35
Q ss_pred HHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhh-HhhhhhhHHHHHHHHHhhcCCCh-HHHHHHHHH
Q 008778 108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGIL-KGYVGLSTAIFTDLCSALFADDP-AKFLFMLAI 180 (554)
Q Consensus 108 ~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~-~~~~~lg~~i~~~l~~~l~~~~~-~~~~~~~~~ 180 (554)
.+.+....++.|++.+...+.....+.|.+|+ +|+++.|+. ..+..+|..+++++.+.+.+..+ |+...+...
T Consensus 312 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~ 387 (394)
T TIGR00883 312 FTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA 387 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence 66667778888988888888889999999986 599999985 44455677777777777766544 555444443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=106.66 Aligned_cols=175 Identities=15% Similarity=0.140 Sum_probs=125.1
Q ss_pred HhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhH
Q 008778 326 FEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIW 403 (554)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~ 403 (554)
+..+|||.|..+++..+...........-.+-+..+..-++. +.......+-..+..+.+|.+.||+.||+.+
T Consensus 4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrril----- 78 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRIL----- 78 (524)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH-----
Confidence 456788998888887765554444433334444445433332 2244555667778889999999999999865
Q ss_pred HHHHHHHHHHHHHH---HHh---ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhh
Q 008778 404 NAASQILMAVGYIL---MAV---ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSG 477 (554)
Q Consensus 404 ~~~~~~l~~~~~~l---~~~---~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p 477 (554)
..+.++.++.... +.. .+++.+++..++.|++.....+...+++.+++|+++...+.++.....++...+ ||
T Consensus 79 -i~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~i-GP 156 (524)
T PF05977_consen 79 -ILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARII-GP 156 (524)
T ss_pred -HHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhc-cc
Confidence 3333333322211 111 234466778888999888888999999999999999999999999999999998 99
Q ss_pred hHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHH
Q 008778 478 LLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLD 522 (554)
Q Consensus 478 ~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~ 522 (554)
.++|.+....| ...+|.+.++..+++.+..
T Consensus 157 algG~Lva~~G---------------~~~~f~inalsfl~~i~~l 186 (524)
T PF05977_consen 157 ALGGILVAFFG---------------AAAAFLINALSFLISILAL 186 (524)
T ss_pred hHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Confidence 99999998886 5788888887666654443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-07 Score=98.20 Aligned_cols=161 Identities=9% Similarity=0.068 Sum_probs=105.1
Q ss_pred hhhhhcHHH-HHHhcCCChhhHHHHHHHHHHHH-hhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchH
Q 008778 31 YTFSNYSDA-LKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY 108 (554)
Q Consensus 31 ~~~~~~~~~-i~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~ 108 (554)
|....+.|. +++++|.+.++...+.....+.. +..++.|+++||+|||+++..+.++..++.+........ .++.
T Consensus 267 ~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 343 (438)
T PRK09952 267 YIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA---QSIF 343 (438)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc---CChH
Confidence 333344454 46778988876655433333333 347899999999999999888877665554433332111 1234
Q ss_pred HHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHh-hhhhhHHHHHHHHHhhcCC--ChHHHHHHHHHHHHH
Q 008778 109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKG-YVGLSTAIFTDLCSALFAD--DPAKFLFMLAIVPFV 184 (554)
Q Consensus 109 ~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~-~~~lg~~i~~~l~~~l~~~--~~~~~~~~~~~~~~~ 184 (554)
+.+++..++.+++.+...+....++.|.+|. +|+.+.|+... +..+|+.+.|.+.+.+.+. +.|...+....+..+
T Consensus 344 ~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~ 423 (438)
T PRK09952 344 WIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCL 423 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 4445556777888888777788889999985 58888888544 3447777877787777653 346666666666666
Q ss_pred HHHHHHhhcc
Q 008778 185 VCLGAIFFLR 194 (554)
Q Consensus 185 ~~~~~~~~~~ 194 (554)
+..+..+.++
T Consensus 424 i~~v~~~~~~ 433 (438)
T PRK09952 424 ISAMTALLMK 433 (438)
T ss_pred HHHHHHHHcc
Confidence 6666655554
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.4e-08 Score=100.55 Aligned_cols=157 Identities=11% Similarity=0.115 Sum_probs=113.6
Q ss_pred cHHHHHHhcCCChhhHHHHH-HHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHH-HhhccCCCchHHHHH
Q 008778 36 YSDALKTLMNLTQLELNNLS-VVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWL-VVSRKIQPLSYWQMC 112 (554)
Q Consensus 36 ~~~~i~~~~~~s~~~~~~~~-~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~-a~~~~~~~~s~~~l~ 112 (554)
..|.+.+++|++.++.+++. ....++.++ .++.|++.||+|+|+.+.++.++..++.+.... +... ++.+.+.
T Consensus 245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~----~~~~~l~ 320 (491)
T PRK11010 245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITD----KNLYSMG 320 (491)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc----ccHHHHH
Confidence 44555678999999999975 455555554 899999999999998887766655555433321 2111 3455555
Q ss_pred HHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHh
Q 008778 113 VFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF 191 (554)
Q Consensus 113 ~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (554)
..-+++.+..|...+.......+..|+ .+++..|+.++..++|..+.+++.+.+.+..+|+..+.+..+.++..++...
T Consensus 321 ~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~ 400 (491)
T PRK11010 321 AAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLL 400 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 556665555566666666777788876 4899999999999999988999988888877888888888888877777766
Q ss_pred hcccc
Q 008778 192 FLRET 196 (554)
Q Consensus 192 ~~~~~ 196 (554)
.+++.
T Consensus 401 ~~~~~ 405 (491)
T PRK11010 401 VCRQT 405 (491)
T ss_pred HHHhc
Confidence 66543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.5e-08 Score=100.06 Aligned_cols=160 Identities=15% Similarity=0.132 Sum_probs=104.7
Q ss_pred HHHHhhhcchhhhhccHHHHHhHhCCCcchh---hHHH-----HHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHH
Q 008778 339 VSFLCGVGTGLAVMNNMGQIGLALGYVDVSI---FVSL-----TSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQIL 410 (554)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~-----~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l 410 (554)
+..++...-...+....|.+.++++.++... ..+. ..+...+|.++.|+++||+|||+.. ..+..+
T Consensus 22 ~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l------~~~~~~ 95 (434)
T PRK15075 22 SGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL------IVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH------HHHHHH
Confidence 3333333333344556677778887765322 1111 1233356889999999999999865 556666
Q ss_pred HHHHHHHHHhccCc---------hhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHH
Q 008778 411 MAVGYILMAVALPG---------SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAG 481 (554)
Q Consensus 411 ~~~~~~l~~~~~~~---------~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g 481 (554)
.+++..+....+.. .+.+..++.|++.|...+....++.|.+|+++|+++.++.....+++..+ ++.+++
T Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~-g~~~g~ 174 (434)
T PRK15075 96 MASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVF-AALLGY 174 (434)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHH-HHHHHH
Confidence 66666665543322 23566778899988888888899999999999999999999888888877 776666
Q ss_pred HHHhccCCCCCCCCcccccccchHHHHHHHH
Q 008778 482 YLYDAQATPTAGGGNTCVGAHCYRLVFVIMA 512 (554)
Q Consensus 482 ~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~ 512 (554)
.+....... .....+|+..|++..
T Consensus 175 ~l~~~~~~~-------~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 175 LLNQWLSPA-------QMAEWGWRIPFLIGC 198 (434)
T ss_pred HHHHhCCHH-------HHhccchHHHHHHHH
Confidence 553221100 000023999998754
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-08 Score=99.78 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=110.3
Q ss_pred hhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccCchhH
Q 008778 350 AVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPGSLY 427 (554)
Q Consensus 350 ~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 427 (554)
.+...+|.+.+++|++.. ....+.+.++..++.+..|+++||+|+|+.+ ..+..+.+++.......+...+.
T Consensus 18 ~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~l~ 91 (355)
T TIGR00896 18 SVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSV------AAGLLLIAAGILIRSAPGTALLF 91 (355)
T ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHH------HHHHHHHHHHHHHHHhccHHHHH
Confidence 345677888889998864 4477888999999999999999999998765 44444444444443223444556
Q ss_pred HHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHH
Q 008778 428 IGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLV 507 (554)
Q Consensus 428 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 507 (554)
+..++.|++.+...+..+.++.|.++ ++++++.|..+....+|..+ ++.+.+.+.+..+. .|+..
T Consensus 92 ~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i-~~~~~~~l~~~~~~-------------~w~~~ 156 (355)
T TIGR00896 92 AGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAAL-AAAATVPLAQHSGG-------------HWQQA 156 (355)
T ss_pred HHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhh-------------hHHHH
Confidence 67778888888777777788888885 78999999999999999998 89888888776531 28888
Q ss_pred HHHHHHHHHH
Q 008778 508 FVIMAMACIV 517 (554)
Q Consensus 508 f~i~~~~~~~ 517 (554)
|.+.++..++
T Consensus 157 f~~~~~~~~~ 166 (355)
T TIGR00896 157 LAWWALPALL 166 (355)
T ss_pred HHHHHHHHHH
Confidence 8777655443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.8e-08 Score=103.00 Aligned_cols=147 Identities=12% Similarity=0.141 Sum_probs=102.4
Q ss_pred hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-c------CchhHHHHHHHHhhhcccc
Q 008778 369 IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-L------PGSLYIGSIIVGLCYGVRL 441 (554)
Q Consensus 369 ~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~------~~~~~~~~~l~g~~~g~~~ 441 (554)
...+...++..++.++.|+++||+|||+.. ..+.++..++.++.... + ...+++..++.|++.|...
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~ 133 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRVY------GMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDY 133 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHH------HHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhh
Confidence 366778899999999999999999999865 44445555554443332 1 1246678889999999999
Q ss_pred cchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCC----CCCCCccc----ccccchHHHHHHHHH
Q 008778 442 AVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATP----TAGGGNTC----VGAHCYRLVFVIMAM 513 (554)
Q Consensus 442 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~----~~~~~~~~----~~~~~~~~~f~i~~~ 513 (554)
+..+.++.|.+|+++||++.++......+|..+ ++.+...+....... .+.....+ ....+|+..|.+.++
T Consensus 134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~i 212 (502)
T TIGR00887 134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILA-GAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAV 212 (502)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHH
Confidence 999999999999999999999999999999987 787766554322110 00000000 011259999977776
Q ss_pred HHHHHHHHH
Q 008778 514 ACIVGFGLD 522 (554)
Q Consensus 514 ~~~~~~~~~ 522 (554)
..++.++..
T Consensus 213 p~~i~~~~~ 221 (502)
T TIGR00887 213 PALLALYFR 221 (502)
T ss_pred HHHHHHHHH
Confidence 665544443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-08 Score=99.51 Aligned_cols=172 Identities=19% Similarity=0.279 Sum_probs=126.6
Q ss_pred HHHHHHHHHhhhcchhhhhccHHHHH-hH----hCCCcch--hhHHHHHHHHhHhhHHhhcchhhH-hhhcCCCchhHHH
Q 008778 334 FWILFVSFLCGVGTGLAVMNNMGQIG-LA----LGYVDVS--IFVSLTSIWGFFGRIISGSVSEYF-IKRAGTPRPIWNA 405 (554)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~-g~r~~~~~~~~~~ 405 (554)
+|.++..=+.=-+.+|++...+..|. .+ +|+++.. ..++.++...=+..+++||++||+ |+|+++ .
T Consensus 23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI------~ 96 (498)
T COG3104 23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI------V 96 (498)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH------H
Confidence 44444443333333444443333333 23 3477543 355666555556778899999995 777766 7
Q ss_pred HHHHHHHHHHHHHHhc---cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcc--hhhHHHHHHhhhhhhHHHhhhhHH
Q 008778 406 ASQILMAVGYILMAVA---LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKY--YGLIYNILILNLPLGSFLFSGLLA 480 (554)
Q Consensus 406 ~~~~l~~~~~~l~~~~---~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~l~~p~i~ 480 (554)
.+.+++.++.+.+... .+..+++.++++++|.|..=+...++..|.+|+++ +-.+.++.....++|+++ +|.+.
T Consensus 97 lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~-~p~i~ 175 (498)
T COG3104 97 LGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLI-APIIT 175 (498)
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHH-HHHHH
Confidence 8888899998887654 34578899999999999998999999999998853 666777888899999998 99999
Q ss_pred HHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHH
Q 008778 481 GYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAA 527 (554)
Q Consensus 481 g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~ 527 (554)
+++.++.+ |+..|...++-..++++..+..++
T Consensus 176 ~~~~~~~g---------------~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 176 GLLAINYG---------------WHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHhhC---------------HHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999997 999999999888888776655543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-08 Score=101.47 Aligned_cols=145 Identities=16% Similarity=0.076 Sum_probs=106.5
Q ss_pred hHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHH
Q 008778 333 DFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQIL 410 (554)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l 410 (554)
.+..+.+.++.............|.+.+++|.++.. ...+.+.++..++.+..|++.||+|+|+.+ ..+..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l------~~g~~~ 100 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI------ITGLFL 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHHHHH
Confidence 344444555444444444555677776678888643 477888999999999999999999999876 666666
Q ss_pred HHHHHHHHH---hc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHH
Q 008778 411 MAVGYILMA---VA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLY 484 (554)
Q Consensus 411 ~~~~~~l~~---~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~ 484 (554)
..++.++.. .. +...+.+..++.|++.|...+..++++.+..+++++....++......+|..+ +|.+.+.+.
T Consensus 101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~-g~~~g~~l~ 177 (438)
T PRK10133 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 777765532 22 23356678889999999988888888888766666666789999999999998 887776654
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.5e-09 Score=99.11 Aligned_cols=141 Identities=15% Similarity=0.244 Sum_probs=122.5
Q ss_pred hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccC-chhHHHHHHHHhhhcccccchHH
Q 008778 368 SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALP-GSLYIGSIIVGLCYGVRLAVTVP 446 (554)
Q Consensus 368 ~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~l~g~~~g~~~~~~~~ 446 (554)
+..+...++.+.+.+++.|.+.||+|+|..+ .++++++...-+++.+.+. +..++.-.+-|++.........+
T Consensus 109 G~LFaskA~~qllvnp~~G~l~~~iGy~ipm------~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla 182 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGNLIDRIGYKIPM------VAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA 182 (464)
T ss_pred hHHHHHHHHHHHHhcccchhhHHHhccccHH------HHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence 3477888999999999999999999998765 7888888888888777554 46778889999999998889999
Q ss_pred HHHHhhCCcc-hhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 447 TASELFGLKY-YGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 447 ~~~~~~~~~~-~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
++++.||+++ |++++|+......+|-.+ ||+++|.+||..| +..+|+++++++++...+.++.
T Consensus 183 mlAd~f~~d~er~~vmGialgfislG~lv-gPpfGGilYe~~G---------------k~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 183 MLADVFPEDNERGSVMGIALGFISLGVLV-GPPFGGILYEFAG---------------KSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred HHHHHcccchhhhHHHHHHHHHHhcccee-cCCcccchHhhcC---------------CcCcHHHHHHHHHHHHHHHHhe
Confidence 9999998876 699999999999999999 9999999999998 8999999999999988887776
Q ss_pred HHhhh
Q 008778 526 AAKTK 530 (554)
Q Consensus 526 ~~~~~ 530 (554)
..+++
T Consensus 247 i~p~~ 251 (464)
T KOG3764|consen 247 IEPTE 251 (464)
T ss_pred eCccc
Confidence 65543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-07 Score=95.84 Aligned_cols=133 Identities=15% Similarity=0.070 Sum_probs=104.4
Q ss_pred hcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 008778 35 NYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV 113 (554)
Q Consensus 35 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~ 113 (554)
.+.|.+.+|.|.+..+.+.+.....+..+. .++.|++.||+|+|+.+..+....+++.++.+++ ++++.+++
T Consensus 226 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~ 298 (382)
T PRK11128 226 GFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-------TALPWLIV 298 (382)
T ss_pred HHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHH
Confidence 344556578999999999865555555544 7899999999999999999999888888777666 78888888
Q ss_pred HHHHHhchhhHhhhhHHHHHHhhccCCCccchHhhH-hhhhhhHHHHHHHHHhhcCCChHHH
Q 008778 114 FLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILK-GYVGLSTAIFTDLCSALFADDPAKF 174 (554)
Q Consensus 114 ~r~l~Gig~g~~~~~~~~~i~~~fp~~rg~a~gi~~-~~~~lg~~i~~~l~~~l~~~~~~~~ 174 (554)
..++.|++.+...+....++.+..+++++++.++.. ...++|..+++.+++.+.+..++..
T Consensus 299 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~ 360 (382)
T PRK11128 299 IQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGV 360 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 999999999998888888888876667888888886 4456676777777777776655543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.4e-09 Score=99.35 Aligned_cols=110 Identities=24% Similarity=0.317 Sum_probs=87.4
Q ss_pred hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHhhhcccccchHH
Q 008778 368 SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPG-SLYIGSIIVGLCYGVRLAVTVP 446 (554)
Q Consensus 368 ~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~l~g~~~g~~~~~~~~ 446 (554)
..+.+.++++..+.++.+|.++||.|||..+ ..++...++...+...++.. .+...-++.|++-|. .++.-+
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvl------l~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rA 143 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVL------LACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRA 143 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHH
Confidence 3477889999999999999999999999865 55555455555554444443 333446778876665 467889
Q ss_pred HHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHh
Q 008778 447 TASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYD 485 (554)
Q Consensus 447 ~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~ 485 (554)
++.|++++|+++.+++.+.+..++|-++ ||+++|++..
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfil-GPmIGgyla~ 181 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFIL-GPMIGGYLAQ 181 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhh-cchhhhHHHh
Confidence 9999999999999999999999999999 9999999887
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-08 Score=103.22 Aligned_cols=152 Identities=16% Similarity=0.107 Sum_probs=104.0
Q ss_pred hhhccHHHHHhHhCCCcchh--hHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc------
Q 008778 350 AVMNNMGQIGLALGYVDVSI--FVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA------ 421 (554)
Q Consensus 350 ~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~------ 421 (554)
.+....+.+.+++|+++.+. ..+. +.......+..|++.||+|+|+.+ .++.++..++.++....
T Consensus 45 ~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vl------lig~ll~~iG~ll~ala~~~~i~ 117 (591)
T PTZ00207 45 AFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRPIF------VLSMTVFCLGTLLFALTFQEVIE 117 (591)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHH------HHHHHHHHHHHHHHHHHhccccc
Confidence 34444566667789986543 3332 222334566789999999999865 66667777776665543
Q ss_pred -cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCccccc
Q 008778 422 -LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVG 500 (554)
Q Consensus 422 -~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~ 500 (554)
+.+.+++..++.|++.+...+.....+.+.|| ++||.+.|+.....++|+++++++..+.+.+ +
T Consensus 118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~------------ 182 (591)
T PTZ00207 118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--N------------ 182 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h------------
Confidence 22345666778888877776767777888895 7889999999999999998766655554432 1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhH
Q 008778 501 AHCYRLVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 501 ~~~~~~~f~i~~~~~~~~~~~~~~l~ 526 (554)
|+..|++.+++.++..++.+.+.
T Consensus 183 ---~~~~fl~l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 183 ---TSAYFFFLMSFALVVGILAIVFM 205 (591)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhhe
Confidence 67778877777766655555543
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2e-06 Score=86.71 Aligned_cols=100 Identities=12% Similarity=-0.095 Sum_probs=79.7
Q ss_pred HHHHHHHHhhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHH
Q 008778 55 SVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCI 134 (554)
Q Consensus 55 ~~~~~~~~~~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~ 134 (554)
...+....+.+++++.+.|+.|+|+.+.+|......-.+..-+ .|-+.+++..++.|+|.+..+.....+++
T Consensus 57 aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~--------~N~y~~yfssallG~Gaallw~GqG~ylt 128 (461)
T KOG3098|consen 57 AIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF--------PNSYYLYFSSALLGFGAALLWTGQGGYLT 128 (461)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh--------cchHHHHHHHHHhhhhHHheecccceehh
Confidence 3344444455899999999999999999999988877766544 46677889999999999999999999999
Q ss_pred hhccC-CCccchHhhHhhhhhhHHHHHHH
Q 008778 135 RNFRR-NRGPVSGILKGYVGLSTAIFTDL 162 (554)
Q Consensus 135 ~~fp~-~rg~a~gi~~~~~~lg~~i~~~l 162 (554)
++.++ ++.+..++.++....+..+++.+
T Consensus 129 ~~st~~tie~Nisi~Wai~~~~li~Ggi~ 157 (461)
T KOG3098|consen 129 SNSTRETIERNISIFWAIGQSSLIIGGII 157 (461)
T ss_pred hcCChhhHHHHHHHHHHHHHHHHHhhhHh
Confidence 99965 57888888888776666555443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.8e-08 Score=112.96 Aligned_cols=178 Identities=11% Similarity=0.075 Sum_probs=115.9
Q ss_pred HhhhhhhhHHHHHHHHHhhhcchhhhhccHHHH-HhHh----CCCc---chhhHHHHHHHHhHhhHHhhcchhhHhhhcC
Q 008778 326 FEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQI-GLAL----GYVD---VSIFVSLTSIWGFFGRIISGSVSEYFIKRAG 397 (554)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----g~~~---~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~ 397 (554)
+.+++++.|+.+++..++...........+..+ .... +.+. .+...+.+.+..++..+++|+++||++||+.
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~ 84 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL 84 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH
Confidence 346677777776666554443322211111111 1111 1111 1224556778888999999999999999875
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhh
Q 008778 398 TPRPIWNAASQILMAVGYILMAVALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSG 477 (554)
Q Consensus 398 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p 477 (554)
+.. ...........+.+.....+.+.+++..++.|++.+...+...+++.+.+++++++.++|+..+..++|..+ ||
T Consensus 85 ~~~--~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~i-gp 161 (1140)
T PRK06814 85 AKI--LKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILL-GT 161 (1140)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHH-HH
Confidence 310 011111111112222222345567788899999999989999999999999999999999999999999999 99
Q ss_pred hHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHH
Q 008778 478 LLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGL 521 (554)
Q Consensus 478 ~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~ 521 (554)
.++|++.+..+ |+..|...+++.++++++
T Consensus 162 ~l~g~l~~~~~---------------~~~~~~~~~~~~~~~~~~ 190 (1140)
T PRK06814 162 IIGGLATISGN---------------FVILVALLMGIAVLGWLA 190 (1140)
T ss_pred HHHHHHHhccc---------------cHHHHHHHHHHHHHHHHH
Confidence 99999998775 888885554444444443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.2e-08 Score=95.03 Aligned_cols=173 Identities=23% Similarity=0.232 Sum_probs=121.0
Q ss_pred hHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcchh--hHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHH
Q 008778 333 DFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSI--FVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQIL 410 (554)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l 410 (554)
..|..++++..++..-+.+....+.+-+++++++.+. ..++..+.+.+.|+.-|.+.||+|.|+.. .++.++
T Consensus 15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~------~~s~~l 88 (417)
T COG2223 15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWT------ILSMLL 88 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHH------HHHHHH
Confidence 4455555555544444334444445557788886543 67788899999999999999999999765 566666
Q ss_pred HHHHHHHHHh--ccC--chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhc
Q 008778 411 MAVGYILMAV--ALP--GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDA 486 (554)
Q Consensus 411 ~~~~~~l~~~--~~~--~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~ 486 (554)
+.+..+.+.. +++ +.+++...+.|++ |..+++..+.+++.||+|++|.+.|+.. .+++|..+ ...+...+...
T Consensus 89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av-~q~~~P~v~~~ 165 (417)
T COG2223 89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAV-AQLVAPLVAVA 165 (417)
T ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHH-HHHHHHHHHHH
Confidence 5665555443 222 2444555566653 5667888889999999999999999999 99999988 67777777766
Q ss_pred cCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhH
Q 008778 487 QATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~ 526 (554)
.+.. .|+.+..+.....++..+..++..
T Consensus 166 ~g~~------------~w~~~~~i~~~~l~v~~v~~~~~~ 193 (417)
T COG2223 166 FGFL------------AWRNVAGIYVVALAIAAVLAWLGM 193 (417)
T ss_pred HhhH------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6410 177777777777777666665554
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.7e-08 Score=98.89 Aligned_cols=151 Identities=17% Similarity=0.126 Sum_probs=105.5
Q ss_pred hhhccHHHHHhHhCCCcchh-hHHHHHHHHhHhhHHhhcchhhH-----hhhcCCCchhHHHHHHHHHHHHHHHHHhcc-
Q 008778 350 AVMNNMGQIGLALGYVDVSI-FVSLTSIWGFFGRIISGSVSEYF-----IKRAGTPRPIWNAASQILMAVGYILMAVAL- 422 (554)
Q Consensus 350 ~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~g~~~~G~l~Dr~-----g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~- 422 (554)
.....+|.++++.|++..+. .+...... .+..+++|+++||+ |||+.. +..+..+++++...+....
T Consensus 17 ~~~~~~~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~-----l~~~~~~~~l~~~~l~~~~~ 90 (402)
T PRK11902 17 LTSGTLQAWMTVEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRGW-----LLLTQVGLAASIAAMAFCPP 90 (402)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchhH-----HHHHHHHHHHHHHHHHhcCc
Confidence 44566888999999987654 22222222 57889999999999 666542 2444455544444433321
Q ss_pred -C--chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccc
Q 008778 423 -P--GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCV 499 (554)
Q Consensus 423 -~--~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~ 499 (554)
. +.+++..++.+++.....+...+++.|.+++|+|+++.++......++..+ ++.+.+.+.+...
T Consensus 91 ~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~-g~~l~~~l~~~~~----------- 158 (402)
T PRK11902 91 HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLV-SGGLALWLADRVL----------- 158 (402)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHH-HhHHHHHHHhccc-----------
Confidence 1 223444455566666667788889999999999999999999999999998 7888888887532
Q ss_pred cccchHHHHHHHHHHHHHHHHH
Q 008778 500 GAHCYRLVFVIMAMACIVGFGL 521 (554)
Q Consensus 500 ~~~~~~~~f~i~~~~~~~~~~~ 521 (554)
+|+..|++.+++.++..+.
T Consensus 159 ---gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 159 ---GWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred ---CHHHHHHHHHHHHHHHHHH
Confidence 1999999988877665554
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-08 Score=106.80 Aligned_cols=146 Identities=18% Similarity=0.203 Sum_probs=110.0
Q ss_pred cHHHHHhHhCCC---c--chhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCchhH
Q 008778 354 NMGQIGLALGYV---D--VSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGSLY 427 (554)
Q Consensus 354 ~~~~~~~~~g~~---~--~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~ 427 (554)
..+.+.++.+.+ + .+...+.+.++..+|.++.|+++||+|||+.+ ..+.++..++.++.... +...++
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~------~~~~~~~~i~~~~~~~~~~~~~~~ 184 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVL------LLSTLVTAVSGVLTAFSPNYTVFL 184 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHH------HHHHHHHHHHHHHHHHcccHHHHH
Confidence 344555667775 3 23477888999999999999999999998765 45555555555554443 334666
Q ss_pred HHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHH
Q 008778 428 IGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLV 507 (554)
Q Consensus 428 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 507 (554)
+..++.|++.+...+....++.|.+|+++|+.+.++......+|.++ +|.+...+. + |++.
T Consensus 185 ~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~---~---------------wr~~ 245 (505)
T TIGR00898 185 VFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVL-LPLVAYFIP---D---------------WRWL 245 (505)
T ss_pred HHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHH-HHHHHHHhh---H---------------HHHH
Confidence 77889999999988999999999999999999999998888888887 786654432 1 8899
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008778 508 FVIMAMACIVGFGLDIL 524 (554)
Q Consensus 508 f~i~~~~~~~~~~~~~~ 524 (554)
|++.++..++..+..++
T Consensus 246 ~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 246 QLAVSLPTFLFFLLSWF 262 (505)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99888877776665533
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=110.73 Aligned_cols=153 Identities=11% Similarity=0.050 Sum_probs=105.4
Q ss_pred hhhhhhhHHHHHHHHHhhhcchhhhhccH-HHHHhHhCCCcc----hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCch
Q 008778 327 EAMWTVDFWILFVSFLCGVGTGLAVMNNM-GQIGLALGYVDV----SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRP 401 (554)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~----~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~ 401 (554)
+.++++.|+.+++..++...........+ +.+..+++.+.. +...+.+.++..++.+.+|+++||+|||+.+
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l--- 80 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVI--- 80 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHH---
Confidence 45667777776666554433222222222 233334555432 2355677888899999999999999999765
Q ss_pred hHHHHHHHHHHHHHHH---HH-hccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhh
Q 008778 402 IWNAASQILMAVGYIL---MA-VALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSG 477 (554)
Q Consensus 402 ~~~~~~~~l~~~~~~l---~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p 477 (554)
..+.++.++..++ .. ..+.+.+++..++.|++.+...+...+++.|.+++++++.+.|+......+|.++ ||
T Consensus 81 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~l-g~ 156 (1146)
T PRK08633 81 ---RIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILA-GT 156 (1146)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHH-HH
Confidence 3332222222211 11 1233456677788899999888888999999999999999999999999999998 89
Q ss_pred hHHHHHHhc
Q 008778 478 LLAGYLYDA 486 (554)
Q Consensus 478 ~i~g~i~~~ 486 (554)
.+++.+.+.
T Consensus 157 ~l~~~l~~~ 165 (1146)
T PRK08633 157 ALFSFLFES 165 (1146)
T ss_pred HHHHHHHHh
Confidence 999998876
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-08 Score=101.29 Aligned_cols=140 Identities=17% Similarity=0.170 Sum_probs=116.8
Q ss_pred hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh---ccCchhHHHHHHHHhhhcccccch
Q 008778 368 SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV---ALPGSLYIGSIIVGLCYGVRLAVT 444 (554)
Q Consensus 368 ~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~l~g~~~g~~~~~~ 444 (554)
+.+.+....+.+++.+-+|++.||+|.|+.. ..+.++.+++.++.+. .+.+.+.+.-++.|++.|..++..
T Consensus 76 ~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~------~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~ 149 (466)
T KOG2532|consen 76 GLIFSSFFWGYILGQIPGGYLADKFGARRVF------FISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAI 149 (466)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHcCchHHH------HHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhh
Confidence 4478889999999999999999999999865 5555556666655543 223466788899999999999999
Q ss_pred HHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhc-cCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHH
Q 008778 445 VPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDA-QATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDI 523 (554)
Q Consensus 445 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~-~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~ 523 (554)
..+.....|++++++..++.....++|.++ +.++.|.+-+. .| |+.+|++.+++.++-.++.+
T Consensus 150 ~~i~~~W~P~~Ers~~~ail~~g~q~g~v~-~mp~sg~lc~s~~G---------------W~sifY~~g~~g~i~~~~w~ 213 (466)
T KOG2532|consen 150 GSILAKWAPPNERSTFIAILTAGSQLGTII-TMPVSGLLCESSLG---------------WPSIFYVFGIVGLIWFILWF 213 (466)
T ss_pred hceeeeECCHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHhccCCC---------------CchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 67799999988 44 99999999999888777666
Q ss_pred HhHHhh
Q 008778 524 LLAAKT 529 (554)
Q Consensus 524 ~l~~~~ 529 (554)
++..++
T Consensus 214 ~~~~d~ 219 (466)
T KOG2532|consen 214 LFYSDS 219 (466)
T ss_pred HHhcCC
Confidence 665543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-07 Score=96.25 Aligned_cols=171 Identities=15% Similarity=0.129 Sum_probs=111.0
Q ss_pred hhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhh----HhhhcCCCchhHHHHHHHHHHHHHHHHHhccC-
Q 008778 351 VMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEY----FIKRAGTPRPIWNAASQILMAVGYILMAVALP- 423 (554)
Q Consensus 351 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr----~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~- 423 (554)
...+.++|.+++|.+... .......+.+.+..++.|+++|| +|||+.. +..+.....+++.++.....
T Consensus 23 ~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~-----il~g~~~~~~~l~ll~~~~~~ 97 (477)
T TIGR01301 23 QLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPF-----IAAGAALVAFAVILIGFAADI 97 (477)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHH-----HHHHHHHHHHHHHHHHhCchh
Confidence 345677788889987643 36667788999999999999995 8888754 22333444444444433111
Q ss_pred -----------------chhHHHHHHHHhhhcccccchHHHHHHhhCCcch--hhHHHHHHhhhhhhHHHhhhhHHHHH-
Q 008778 424 -----------------GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYY--GLIYNILILNLPLGSFLFSGLLAGYL- 483 (554)
Q Consensus 424 -----------------~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~~g~~l~~p~i~g~i- 483 (554)
....+...+..++.+...+...++++|..|++++ +.+.++.....++|+.+ ++.+.+..
T Consensus 98 ~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~il-g~~~g~~~~ 176 (477)
T TIGR01301 98 GHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVL-GYAAGAYSG 176 (477)
T ss_pred hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 0112233344456666666778899999998755 67999999999999998 88777654
Q ss_pred -HhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhh
Q 008778 484 -YDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKT 529 (554)
Q Consensus 484 -~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~ 529 (554)
.+..+... ....+.-..+++..|++.+++.+++.+...+..+|+
T Consensus 177 ~~~~~~~~~--~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 177 LYKIFPFTK--TEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred HHHhccccc--ccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 22211000 000011223589999999988888888777766554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.1e-07 Score=87.54 Aligned_cols=126 Identities=16% Similarity=0.092 Sum_probs=95.8
Q ss_pred hcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhch
Q 008778 43 LMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNS 121 (554)
Q Consensus 43 ~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig 121 (554)
++|++.++.+...+.+..+... ..+.+++.||+|+|+++.++..+..++.++.... ++.+.+ ..-++.|++
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-------~~~~~~-~~~~l~g~~ 243 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-------HGYVAM-WFVLALGLF 243 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-------CCHHHH-HHHHHHHHH
Confidence 3699999999977777777765 7999999999999999988888877777555443 222222 344478899
Q ss_pred hhHhhhhHHHHHHhhccCCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHH
Q 008778 122 TTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFM 177 (554)
Q Consensus 122 ~g~~~~~~~~~i~~~fp~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~ 177 (554)
.+.++|.......+.+|++.+.+.++... ..+|+++.|++.+.+.+..+.+.-++
T Consensus 244 ~s~i~P~~~s~a~~~~~~~~~~asai~~~-~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 244 NSIMFPTIFSLALNALGRHTSQGSGILCL-AIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHH-HHhcchHHHHHHHHHHHhccchHHHH
Confidence 99999999999999999877788888644 46888888888888877544444433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.8e-07 Score=91.67 Aligned_cols=163 Identities=17% Similarity=0.125 Sum_probs=106.5
Q ss_pred hhccHHHHHhHhCCCcchh-hHHHHHHHHhHhhHHhhcchhhH-----hhhcCCCchhHHHHHHHHHHHHHHHHHhcc--
Q 008778 351 VMNNMGQIGLALGYVDVSI-FVSLTSIWGFFGRIISGSVSEYF-----IKRAGTPRPIWNAASQILMAVGYILMAVAL-- 422 (554)
Q Consensus 351 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~g~~~~G~l~Dr~-----g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~-- 422 (554)
.....|.+.++.|.+.... ..+...+...+ .++.|+++||+ |||+.. +..+..+.++....+....
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~-----l~~~~~~~~~~~~~l~~~~~~ 80 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRRSW-----LVLTQVLLLSLLLILSFLVPS 80 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccHHH-----HHHHHHHHHHHHHHHHcCCcc
Confidence 3445777888999986544 22222333333 89999999998 555532 2344444444433333221
Q ss_pred Cc--hhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCccccc
Q 008778 423 PG--SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVG 500 (554)
Q Consensus 423 ~~--~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~ 500 (554)
.. .+....++.+++.+...+...+++.|.+|+|+|+.+.|+......+|..+ ++.+.+.+.+..+.+. ..
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~l~~~l~~~~g~~~-------~~ 152 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLL-SGSLALVLASPEFANT-------GL 152 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHH-HHHHHHHHhhhccccc-------cc
Confidence 11 23334445566666666677888999999999999999999999999998 8989888887765210 12
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhHH
Q 008778 501 AHCYRLVFVIMAMACIVGFGLDILLAA 527 (554)
Q Consensus 501 ~~~~~~~f~i~~~~~~~~~~~~~~l~~ 527 (554)
..+|+..|++.++..+++.+..++..+
T Consensus 153 ~~~wr~~f~i~ai~~l~~~~~~~~~~~ 179 (356)
T TIGR00901 153 ITLWGYIFFWTALLILPGLLVTLFLAK 179 (356)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334999999988877766555444333
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-06 Score=89.31 Aligned_cols=150 Identities=10% Similarity=-0.086 Sum_probs=101.4
Q ss_pred HHHHHHhcCCChhhHHHHHHHHH-HHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 008778 37 SDALKTLMNLTQLELNNLSVVKD-IGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVF 114 (554)
Q Consensus 37 ~~~i~~~~~~s~~~~~~~~~~~~-~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~ 114 (554)
.+.+.+|.|++.++.+++..... ...++ .++.|++.||+|+|+.+..+..+..+..+.. +........++.+.++..
T Consensus 231 ~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 309 (390)
T TIGR02718 231 SKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLW-FAQAAFWLAPGIAVAWSC 309 (390)
T ss_pred hhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHcccCCcHHHHHHH
Confidence 34555678999999999655443 34444 6899999999999999888776653333322 211110000234444455
Q ss_pred HHHHhchhhHhhhhHHHHHHhhcc--CCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 008778 115 LCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL 187 (554)
Q Consensus 115 r~l~Gig~g~~~~~~~~~i~~~fp--~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 187 (554)
.++++++.+...+.......+..+ +++++..++.++..++|..+++.+.+.+.+..+++..+..+....++.+
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 566667777777777777777774 4589999999999999999988888888776666666666655544443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-07 Score=100.55 Aligned_cols=135 Identities=21% Similarity=0.190 Sum_probs=109.4
Q ss_pred hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHhhhcccccchHHH
Q 008778 369 IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGSLYIGSIIVGLCYGVRLAVTVPT 447 (554)
Q Consensus 369 ~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~ 447 (554)
...+++.++..+|.++.|.++||+|||+.+ ..+.++..+..+..+.. +.....+.-++.|++.++...+...+
T Consensus 122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~------~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~ 195 (521)
T KOG0255|consen 122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPVL------LVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGL 195 (521)
T ss_pred HHHHHHHHHHHHHHhhheehHhhcccHHHH------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhh
Confidence 466788999999999999999999999876 66666666666555543 44577789999999999999999999
Q ss_pred HHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHH
Q 008778 448 ASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAA 527 (554)
Q Consensus 448 ~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~ 527 (554)
..|.+++++|+.+..+ ......++.+ ++.+.+++.. + |++.+++..+...+.+++ +++.+
T Consensus 196 ~~E~~~~~~R~~~~~~-~~~~~~~~~~-~~~~~a~~~~--~---------------Wr~~~~~~~~~~~~~~~~-~~l~~ 255 (521)
T KOG0255|consen 196 VAEIVSPKQRGLALTL-GGFFFVGGLM-LPAGAAYITR--D---------------WRWLFWIISIPSGLFLLL-WFLPP 255 (521)
T ss_pred heeecCcchhhHHHHH-HHHHHHHHHH-HHHHHHHHHh--h---------------HHHHHHHHHHHHHHHHHH-HHccC
Confidence 9999999999999999 7777888887 7888888776 2 999999999888777666 44443
Q ss_pred hh
Q 008778 528 KT 529 (554)
Q Consensus 528 ~~ 529 (554)
+.
T Consensus 256 Es 257 (521)
T KOG0255|consen 256 ES 257 (521)
T ss_pred cC
Confidence 43
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-06 Score=90.67 Aligned_cols=164 Identities=17% Similarity=0.106 Sum_probs=112.2
Q ss_pred ccchhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCch--HHHHHHHHHHHHHHHHHHHHh-hccC
Q 008778 28 GNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAP--IILLIGSLEGLVGYGAQWLVV-SRKI 103 (554)
Q Consensus 28 g~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r--~~~~~g~~l~~~~~~~~~~a~-~~~~ 103 (554)
|.....+.....-.+++|++.+|...+.....+..+ .+.+.|++.||+|.| +++.++++++.+-.+...+.. ....
T Consensus 296 g~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~ 375 (477)
T PF11700_consen 296 GVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFF 375 (477)
T ss_pred HHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 444445555555677999999998886666556555 489999999999999 888888877744444433300 0011
Q ss_pred CCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCC-hHHHHHHHHHH
Q 008778 104 QPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADD-PAKFLFMLAIV 181 (554)
Q Consensus 104 ~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~-~~~~~~~~~~~ 181 (554)
..++.+++++..++.|+..|...+.+-++.++..|+ +.+.-.|++....-.++.++|.+.+.+.+.. ..|+-+....+
T Consensus 376 g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~ 455 (477)
T PF11700_consen 376 GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLV 455 (477)
T ss_pred CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 116789999999999999999999999999999986 5799999998876677766655555555432 23333333333
Q ss_pred HHHHHHHHHh
Q 008778 182 PFVVCLGAIF 191 (554)
Q Consensus 182 ~~~~~~~~~~ 191 (554)
..++.++.++
T Consensus 456 lf~~gl~ll~ 465 (477)
T PF11700_consen 456 LFLIGLILLF 465 (477)
T ss_pred HHHHHHHHHh
Confidence 3444444333
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.7e-07 Score=94.45 Aligned_cols=133 Identities=17% Similarity=0.249 Sum_probs=108.3
Q ss_pred hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHhhhcccccchHH
Q 008778 368 SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LPGSLYIGSIIVGLCYGVRLAVTVP 446 (554)
Q Consensus 368 ~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~ 446 (554)
+...+...++..+|.++.|+++|++|||+.+ .++.++..++.++.... +...+.++.++.|+|.|....+.|.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l------~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~pi 165 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTL------LLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPV 165 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchh
Confidence 4577889999999999999999999999876 77777788887777654 4457788999999999999999999
Q ss_pred HHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHH
Q 008778 447 TASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGL 521 (554)
Q Consensus 447 ~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~ 521 (554)
++.|..|++.||...+.......+|..+ + .+.+...+... .+|+..+.+..+.+++..+.
T Consensus 166 y~sEiap~~~RG~l~~~~~l~~~~Gi~~-~-~~~~~~~~~~~-------------~~Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 166 YISEIAPAHIRGTLVSLYQLFITIGILL-G-YCINYGTSKVY-------------AGWRIPLGLALIPAVILALG 225 (513)
T ss_pred hHhhcCChhhhHHHHHHHHHHHHHHHHH-H-HHHhhhhccCC-------------ccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888877766 5 45555554430 12998888888777776666
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.9e-07 Score=93.96 Aligned_cols=150 Identities=19% Similarity=0.158 Sum_probs=118.1
Q ss_pred HHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccCc--hhHHHH
Q 008778 355 MGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPG--SLYIGS 430 (554)
Q Consensus 355 ~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~--~~~~~~ 430 (554)
.+.+.++++.+.. +++.++......+..++.+.+.||+|.|... +.+.++..+++++..+.+.. .....-
T Consensus 69 ~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~------i~G~~v~~~g~~lssF~~~i~~l~lt~g 142 (509)
T KOG2504|consen 69 FEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVM------IAGGLVAALGLLLSSFATSLWQLYLTFG 142 (509)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444555665543 4566777777777889999999999999876 77888888888887665443 334456
Q ss_pred HHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHH
Q 008778 431 IIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVI 510 (554)
Q Consensus 431 ~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i 510 (554)
++.|+|.|..+.....++..+| +|+|+.+.|+.....++|.+++ |.+..++.+..| |++.+++
T Consensus 143 vi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~-~~l~~~l~~~~G---------------~r~~~l~ 205 (509)
T KOG2504|consen 143 VIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVF-PPLLKYLLSKYG---------------WRGALLI 205 (509)
T ss_pred HHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeH-HHHHHHHHHHhC---------------cHHHHHH
Confidence 7888888888888888888888 6999999999999999999997 779999999997 9999999
Q ss_pred HHHHHHHHHHHHHHhHH
Q 008778 511 MAMACIVGFGLDILLAA 527 (554)
Q Consensus 511 ~~~~~~~~~~~~~~l~~ 527 (554)
.+.+.+-.++.....++
T Consensus 206 ~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 206 FGGISLNVLVAGALLRP 222 (509)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99888766666555544
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.9e-05 Score=76.20 Aligned_cols=112 Identities=16% Similarity=0.130 Sum_probs=74.4
Q ss_pred hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccCCCccc
Q 008778 65 GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPV 144 (554)
Q Consensus 65 ~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~~rg~a 144 (554)
-+++-+..+|+.-+.=...+.++..+|.++.+++ ++.+.=+++-++.+++.|..-..-..+ +..|++ .+
T Consensus 76 Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~-------~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y~~---~~ 144 (402)
T PF02487_consen 76 KLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS-------PSVWVRLLGVVLASLSSGLGEVTFLSL-THFYGK---SS 144 (402)
T ss_pred HHHhHhhhhhccchHHHHHHHHHHHHHHhheeec-------cchhHHHHHHHHHhhhhhhhHHHHHHH-HHhcCc---cc
Confidence 5677788888875554566667788898888887 788877788888899988887666665 556665 35
Q ss_pred hHhhHhhhhhhHHHHHHHHHhhcC--CChHHHHHHHHHHHHHHHH
Q 008778 145 SGILKGYVGLSTAIFTDLCSALFA--DDPAKFLFMLAIVPFVVCL 187 (554)
Q Consensus 145 ~gi~~~~~~lg~~i~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~ 187 (554)
.+-+.+|.|.++++++.....+-. -..+..+.....+|.+..+
T Consensus 145 l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~ 189 (402)
T PF02487_consen 145 LSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLL 189 (402)
T ss_pred cccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 677788888888776655544433 1223344444444444333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.6e-06 Score=85.32 Aligned_cols=103 Identities=16% Similarity=0.221 Sum_probs=79.7
Q ss_pred hHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh---ccCc-----hhHHHHHHHHhhhcccc
Q 008778 370 FVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV---ALPG-----SLYIGSIIVGLCYGVRL 441 (554)
Q Consensus 370 ~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~-----~~~~~~~l~g~~~g~~~ 441 (554)
+-....+++++|+++.|++.||+|||+.+ ...+++++++.+.... .++. .+...-++.|+|.|+-+
T Consensus 89 Vn~~A~vGti~GQl~FG~lgD~~GRK~vY------G~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDY 162 (538)
T KOG0252|consen 89 VNAAALVGTIFGQLFFGWLGDKFGRKKVY------GKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDY 162 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhh------hHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCC
Confidence 45566789999999999999999999877 5555556565543332 1221 34556678999999999
Q ss_pred cchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhH
Q 008778 442 AVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLL 479 (554)
Q Consensus 442 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i 479 (554)
|...++.+|....+.||+-.+.+...++.|... |.++
T Consensus 163 PlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila-G~iv 199 (538)
T KOG0252|consen 163 PLSATIMSESANKKTRGAFIAAVFAMQGFGILA-GGIV 199 (538)
T ss_pred cchHHHhhhhhhhccccceeEEEEEecchhHhh-ccHH
Confidence 999999999999999999999988888877665 5533
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.4e-06 Score=77.58 Aligned_cols=169 Identities=14% Similarity=0.179 Sum_probs=112.9
Q ss_pred chhHHHHHHHHHHHhhccchhhhhcHHHHHHhcCCChhhHHH-HHHHHHHHHhhhhhhhhhcccCCchHHHHHHHHH-HH
Q 008778 12 GKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNN-LSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLE-GL 89 (554)
Q Consensus 12 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~s~~~~~~-~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~g~~l-~~ 89 (554)
.-|.+.+.+++...+.-..+..+ ...+++.||+|+.+.+. .++++.+....+|+.|.++||+|++.+.+.+.++ +.
T Consensus 265 pfw~~~iicv~yyva~fPFi~lg--~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl 342 (459)
T KOG4686|consen 265 PFWVLVIICVLYYVAWFPFITLG--PMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTL 342 (459)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhh--HHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHH
Confidence 34777776665544332222222 12368999999999998 5777777777899999999999998876665554 44
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccCC-CccchHhhHhhhhhhHHHHHHHHHhhcC
Q 008778 90 VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGLSTAIFTDLCSALFA 168 (554)
Q Consensus 90 ~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~~-rg~a~gi~~~~~~lg~~i~~~l~~~l~~ 168 (554)
++-.+..+. .+.=+....+.|++........-..+....|++ .|++.|...+.-++|-++.+.+.+.+.+
T Consensus 343 ~~H~~l~Ft---------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d 413 (459)
T KOG4686|consen 343 LGHSGLFFT---------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIAD 413 (459)
T ss_pred HHhhhHHhh---------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeec
Confidence 444444443 333456667778887776544556777788874 8999999999999998887777777776
Q ss_pred CCh---H-HHHHHHHHHHHHHHHHHHh
Q 008778 169 DDP---A-KFLFMLAIVPFVVCLGAIF 191 (554)
Q Consensus 169 ~~~---~-~~~~~~~~~~~~~~~~~~~ 191 (554)
.++ | +.+++.....++..+...+
T Consensus 414 ~~g~y~~le~ffl~~~~~aL~svgil~ 440 (459)
T KOG4686|consen 414 GDGSYDNLEAFFLIIGLMALTSVGILF 440 (459)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 543 3 3333333344444444333
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-06 Score=89.21 Aligned_cols=146 Identities=18% Similarity=0.235 Sum_probs=109.1
Q ss_pred hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHhhhcccccchHHH
Q 008778 368 SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPGSLYIGSIIVGLCYGVRLAVTVPT 447 (554)
Q Consensus 368 ~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~ 447 (554)
....+.+.++.++|.+.+|.+.||+.-.+.+ .....+...++++-....+.+.+.+.-++.|++.+..+|....+
T Consensus 84 ~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l-----~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~ 158 (495)
T KOG2533|consen 84 GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGL-----SVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAI 158 (495)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHhCChHHHH-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHH
Confidence 3477888999999999999999999843322 11122212222222223455677788999999999999999999
Q ss_pred HHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHH
Q 008778 448 ASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAA 527 (554)
Q Consensus 448 ~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~ 527 (554)
+...|+++++|..+|+.++..++|+++ |.+++..+....+.. +..+|++.|++-+++.++..++.++..+
T Consensus 159 lg~wy~~~e~g~r~~~~~a~~~~g~i~-ggliA~g~~~~~~~~---------~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 159 LGNWYGKSERGLRMGIWYASASLGNIF-GGLIAYGVFKLNGSG---------GLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred HHhhcChhhhhhhHHHHHHhcchhhHH-HHHHHHHhhhhcCCC---------CcCCceeehhHHHHHHHHHHheEEEEec
Confidence 999999999999999999999999998 888888876644431 1124999999999988877766666554
Q ss_pred h
Q 008778 528 K 528 (554)
Q Consensus 528 ~ 528 (554)
.
T Consensus 229 ~ 229 (495)
T KOG2533|consen 229 D 229 (495)
T ss_pred C
Confidence 3
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.5e-06 Score=83.42 Aligned_cols=162 Identities=17% Similarity=0.108 Sum_probs=103.6
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchH-
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY- 108 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~- 108 (554)
+....|...+-++-|++..+..+.......... ..+++..+.||+|||+.++.+..+..+..++......-. +..
T Consensus 287 ~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~---~~~~ 363 (485)
T KOG0569|consen 287 NAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLS---NSFG 363 (485)
T ss_pred ceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH---HHhh
Confidence 445566677889999999999997665555554 589999999999999999999999988888766542221 111
Q ss_pred -HH--H-HHHHHHHhchhhHh-hhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 008778 109 -WQ--M-CVFLCMGGNSTTWM-NTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVP 182 (554)
Q Consensus 109 -~~--l-~~~r~l~Gig~g~~-~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~ 182 (554)
|. + +++.++..++.+.. -|.+.-+.+|.||+ .|..+.+......-++..+-+.....+.+..+- +.+++.+++
T Consensus 364 ~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~ 442 (485)
T KOG0569|consen 364 SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIP 442 (485)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHH
Confidence 11 1 22233333332222 24677888999985 699999998887777665554444444333333 444444444
Q ss_pred HHHHH-HHHhhcccc
Q 008778 183 FVVCL-GAIFFLRET 196 (554)
Q Consensus 183 ~~~~~-~~~~~~~~~ 196 (554)
+.+.. .....+||.
T Consensus 443 ~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 443 LAIFLIYLYRYLPET 457 (485)
T ss_pred HHHHHHHHHHhCccc
Confidence 44444 444444444
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.2e-06 Score=83.85 Aligned_cols=136 Identities=14% Similarity=0.068 Sum_probs=103.6
Q ss_pred hhccchhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008778 26 ISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQ 104 (554)
Q Consensus 26 ~~g~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~ 104 (554)
..|...+.+.-...=..++|++..|+..+.....+..+ .+++.|++.||+|.|+++.++.++.....+..-+.
T Consensus 265 ~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~------ 338 (438)
T COG2270 265 IDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL------ 338 (438)
T ss_pred HhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc------
Confidence 34554444333333456999999999997766666665 48999999999999999999999888887776554
Q ss_pred CchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcC
Q 008778 105 PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA 168 (554)
Q Consensus 105 ~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~ 168 (554)
.....+.++..+.|...|.....+-++..+..|+ |-+...|++....-.++.++|.+.+.+.+
T Consensus 339 -~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~ 402 (438)
T COG2270 339 -EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQ 402 (438)
T ss_pred -cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence 3445567778889999999999999999999986 56999999988766776565555554443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.3e-06 Score=84.27 Aligned_cols=143 Identities=12% Similarity=0.108 Sum_probs=108.9
Q ss_pred hhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhh
Q 008778 49 LELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNT 127 (554)
Q Consensus 49 ~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~ 127 (554)
...|.+.+...+.-+. ..++.++.+|+|.|+.++++.++.++=..+++++ ++.+.+.+.+.+.|+-.+....
T Consensus 259 ~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~-------~~~~~i~~~klLH~~e~~l~lv 331 (412)
T PF01306_consen 259 QMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA-------TNPWVISLIKLLHALEFPLLLV 331 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---------SHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh-------cchHHHHHHHHHHHHHHHHHHH
Confidence 3445544444444443 6799999999999999999999999999999988 8999999999999999999999
Q ss_pred hHHHHHHhhccCC-CccchHhh-HhhhhhhHHHHHHHHHhhcCCChH-HHHHHHHHHHHHHHHHHHhhccccCC
Q 008778 128 AVLVTCIRNFRRN-RGPVSGIL-KGYVGLSTAIFTDLCSALFADDPA-KFLFMLAIVPFVVCLGAIFFLRETTP 198 (554)
Q Consensus 128 ~~~~~i~~~fp~~-rg~a~gi~-~~~~~lg~~i~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (554)
+...++++.||+| .++...+. ..+.++|..+.+++.+.+.+..+. ..++.++.+.....++..+.++..++
T Consensus 332 a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 332 AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 9999999999876 46666664 567789999999999999887764 45566666666666677666655443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.9e-06 Score=85.55 Aligned_cols=116 Identities=14% Similarity=0.124 Sum_probs=88.3
Q ss_pred ChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHh
Q 008778 47 TQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWM 125 (554)
Q Consensus 47 s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~ 125 (554)
+..+.+++.....++.++ .++.+++.||+|+|+++..+..+..++.+...+. . ++.+.+++..++.|++.+..
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~g~~~~~~ 328 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA--G----SNLPLILVLIILAGFGQNFV 328 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc--c----hhHHHHHHHHHHHHHHHHHH
Confidence 455666655555555544 8899999999999999999998888887776553 1 35666777788889999888
Q ss_pred hhhHHHHHHhhcc--------CCCccchHhhHhhhhhhHHHHHHHHHhhcC
Q 008778 126 NTAVLVTCIRNFR--------RNRGPVSGILKGYVGLSTAIFTDLCSALFA 168 (554)
Q Consensus 126 ~~~~~~~i~~~fp--------~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~ 168 (554)
.+.....++|..+ +++|.+.|+.+....+|..+++.+.+.+++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 329 TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777653 246899999998888888888877777653
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.7e-05 Score=78.89 Aligned_cols=132 Identities=12% Similarity=0.035 Sum_probs=98.3
Q ss_pred hhhcHHHHHHhcC-CChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 008778 33 FSNYSDALKTLMN-LTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ 110 (554)
Q Consensus 33 ~~~~~~~i~~~~~-~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~ 110 (554)
+..+.+...+|.| .+....+...+...+.=+. -.+.+++..|+|.|++++++.+..++=..+.+... ++.+.
T Consensus 226 ~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~------~~~~~ 299 (400)
T PF03825_consen 226 YYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS------DPWPF 299 (400)
T ss_pred HHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc------CCcHH
Confidence 4444555667777 6666666544444444443 67899999999999999999998888777766541 22222
Q ss_pred ----HHHHHHHHhchhhHhhhhHHHHHHhhccCC-CccchHhhHh-hhhhhHHHHHHHHHhhcCCC
Q 008778 111 ----MCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKG-YVGLSTAIFTDLCSALFADD 170 (554)
Q Consensus 111 ----l~~~r~l~Gig~g~~~~~~~~~i~~~fp~~-rg~a~gi~~~-~~~lg~~i~~~l~~~l~~~~ 170 (554)
.++...++|+..+..+.++..++.+..|++ |+++.+++.+ ..|+|..+++.+++.+.+..
T Consensus 300 ~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~ 365 (400)
T PF03825_consen 300 IVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAF 365 (400)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 223456799999999999999999999865 8999999876 46899999888888888753
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.3e-06 Score=74.08 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=67.6
Q ss_pred HHHhcCCChhhHHHHHHHHHHHH-hhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHH
Q 008778 40 LKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG 118 (554)
Q Consensus 40 i~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~ 118 (554)
+-++++....|++.+....+... .++.+.|-+.||-|||+..+ .+++-+.++++.-.. +.|..++++|++.
T Consensus 63 LYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracv----tycitYiLsCiTKhS----pqYkVLmVGR~LG 134 (454)
T KOG4332|consen 63 LYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV----TYCITYILSCITKHS----PQYKVLMVGRVLG 134 (454)
T ss_pred eehhcCccCCccceeeecccchHHHHHHHHHHHHhhhcccccee----eehHHHHHHHHhhcC----CceEEEeehhhhh
Confidence 33567888888988665554444 46999999999999998654 455566666665222 6789999999999
Q ss_pred hchhhHhhhhHHHH-HHhhccCCCccchH
Q 008778 119 GNSTTWMNTAVLVT-CIRNFRRNRGPVSG 146 (554)
Q Consensus 119 Gig~g~~~~~~~~~-i~~~fp~~rg~a~g 146 (554)
|++.+..+.+--+. +.|+- ++|+.-.-
T Consensus 135 GiaTsLLFSaFEsWliaEHn-ekr~Feqq 162 (454)
T KOG4332|consen 135 GIATSLLFSAFESWLIAEHN-EKRGFEQQ 162 (454)
T ss_pred hHHHHHHHHHHHHHHHHHhh-hccCChHh
Confidence 99999887654433 33332 34554433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00045 Score=74.24 Aligned_cols=158 Identities=13% Similarity=0.026 Sum_probs=112.2
Q ss_pred hcHHHHHHhcCCChhhHHH-HHHHHHHHHhhhhhhhhhccc-CCchHHHHHHHHHHHHHHHHHHHHhhccCC-CchHHHH
Q 008778 35 NYSDALKTLMNLTQLELNN-LSVVKDIGKAFGLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQ-PLSYWQM 111 (554)
Q Consensus 35 ~~~~~i~~~~~~s~~~~~~-~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~-~~s~~~l 111 (554)
.+...+.+.+|++.++... +..+..+.++..++.|.++|+ +|+++++.++.++..+|..+.++....... .......
T Consensus 9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~ 88 (654)
T TIGR00926 9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD 88 (654)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence 3445567789999888777 455656666778999999996 699999999999999999888765221100 0112334
Q ss_pred HHHHHHHhchhhHhhhhHHHHHHhhccC----CCccchHhhHhhhhhhHHHHHHHHHhhcCC-------ChHHHHHHHHH
Q 008778 112 CVFLCMGGNSTTWMNTAVLVTCIRNFRR----NRGPVSGILKGYVGLSTAIFTDLCSALFAD-------DPAKFLFMLAI 180 (554)
Q Consensus 112 ~~~r~l~Gig~g~~~~~~~~~i~~~fp~----~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~-------~~~~~~~~~~~ 180 (554)
+++-.+.++|.|.+-++..+...|-|++ +|-....+...+.++|+.+..++...+-.. ..|...+.+..
T Consensus 89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~ 168 (654)
T TIGR00926 89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA 168 (654)
T ss_pred HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence 5667777889999999999999999952 256677777888889987777776655422 24777777776
Q ss_pred HHHHHHHHHHhh
Q 008778 181 VPFVVCLGAIFF 192 (554)
Q Consensus 181 ~~~~~~~~~~~~ 192 (554)
+..++.++....
T Consensus 169 i~m~ia~lvf~~ 180 (654)
T TIGR00926 169 ILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHH
Confidence 666666655443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-05 Score=76.89 Aligned_cols=175 Identities=17% Similarity=0.048 Sum_probs=120.7
Q ss_pred hhcchhhhhccHHHHHh-HhCCC--cchhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh
Q 008778 344 GVGTGLAVMNNMGQIGL-ALGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV 420 (554)
Q Consensus 344 ~~~~~~~~~~~~~~~~~-~~g~~--~~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~ 420 (554)
.++........+.+.++ .+..+ +++..-..+..+-.++.+..|++.+|+++|+.+ .+++.++++++.++..
T Consensus 24 l~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi------~lgL~l~avg~~lF~p 97 (422)
T COG0738 24 LWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGI------VLGLLLYAVGAALFWP 97 (422)
T ss_pred HHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHH------HHHHHHHHHHHHHHhh
Confidence 33333333333444444 35655 444555667778888999999999999999887 8888999999877642
Q ss_pred -cc--Cc-hhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCC-CCCC
Q 008778 421 -AL--PG-SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPT-AGGG 495 (554)
Q Consensus 421 -~~--~~-~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~-~~~~ 495 (554)
.+ .. .+.+..++.+.|.|..-+...+++..+.+++....-.++....+.+|.++ +|.+++.+.+...... ....
T Consensus 98 Aa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~-gp~~g~~lils~~~~~~~~~~ 176 (422)
T COG0738 98 AASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAIL-GPLLGSSLILSGVALTMSAAQ 176 (422)
T ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHH-HHHHHHHHHHhhhhhccCHHH
Confidence 22 22 44566778888888888888999999998888888999999999999999 8999999888421000 0000
Q ss_pred c---ccccccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 496 N---TCVGAHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 496 ~---~~~~~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
. ......+++.+|..++...++..+.....
T Consensus 177 ~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~ 209 (422)
T COG0738 177 ILAIKGADASSVQFPYLILAGLLVLLAVLILLS 209 (422)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Confidence 0 00122357788888887776665554443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.5e-05 Score=75.07 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=118.9
Q ss_pred hhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccCchhH
Q 008778 350 AVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPGSLY 427 (554)
Q Consensus 350 ~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 427 (554)
.+-..++.+-+++|.+.+ +...++.-++-.+..+...++..|+|.++.+ ..+.++.+++.++=.......++
T Consensus 30 svgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l------~~~Llli~~G~~iR~~~~~~~L~ 103 (395)
T COG2807 30 SVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSL------FLALLLIAAGILIRSLGGLPLLF 103 (395)
T ss_pred hhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHH------HHHHHHHHHHHHHHhcccHHHHH
Confidence 344556666677888754 4467777788888899999999999988765 66666677777665544556788
Q ss_pred HHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHH
Q 008778 428 IGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLV 507 (554)
Q Consensus 428 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 507 (554)
....+.|.+.+......|.++-+.|| |+.+..+|++.+...+++++ ++.+.-.+.+..+ +|+..
T Consensus 104 ~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaL-aa~lavpla~~~~--------------gW~~a 167 (395)
T COG2807 104 LGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAAL-AAALAVPLAQHSG--------------GWRGA 167 (395)
T ss_pred HHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHH-HhhhhhHHHHhhc--------------cHHHH
Confidence 89999999999999999999999995 88899999999999999998 7888887777774 29998
Q ss_pred HHHHHHHHHHHHHH
Q 008778 508 FVIMAMACIVGFGL 521 (554)
Q Consensus 508 f~i~~~~~~~~~~~ 521 (554)
..+-+..++++++.
T Consensus 168 L~~WAl~allAl~~ 181 (395)
T COG2807 168 LGFWALLALLALLI 181 (395)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777776553
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2e-05 Score=81.90 Aligned_cols=122 Identities=20% Similarity=0.078 Sum_probs=89.2
Q ss_pred HHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHh
Q 008778 41 KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG 119 (554)
Q Consensus 41 ~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~G 119 (554)
++.+|.+....++......++.+ ..++.+++.||+|+|+++.+|..+..++.++..+. .. ++++.+++..++.|
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~-~~----~~~~~~~~~~~l~g 330 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV-SV----WSLPVALVALAIAS 330 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-Cc----hhHHHHHHHHHHHH
Confidence 44567655544444444344444 48899999999999999999999888887776553 11 36777777788899
Q ss_pred chhhHhhhhHHHHHHhhccC--------CCccchHhhHhhhhhhHHHHHHHHHhhc
Q 008778 120 NSTTWMNTAVLVTCIRNFRR--------NRGPVSGILKGYVGLSTAIFTDLCSALF 167 (554)
Q Consensus 120 ig~g~~~~~~~~~i~~~fp~--------~rg~a~gi~~~~~~lg~~i~~~l~~~l~ 167 (554)
+|.+...+.......|..|+ ++|...|+.+....+|..+++.+.+.++
T Consensus 331 ~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 331 IGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888777652 2488888888888888888777665553
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0066 Score=62.41 Aligned_cols=130 Identities=8% Similarity=-0.057 Sum_probs=86.8
Q ss_pred HHHHHhcCC-----ChhhHHHHHHHHHHHHh--hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCC--Cc--
Q 008778 38 DALKTLMNL-----TQLELNNLSVVKDIGKA--FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQ--PL-- 106 (554)
Q Consensus 38 ~~i~~~~~~-----s~~~~~~~~~~~~~~~~--~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~--~~-- 106 (554)
.++++.+.+ +.+.+.++-+...+.+. +.++.+++++|++|++++-.....+.+...+.++.....-+ |+
T Consensus 27 R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~ 106 (472)
T TIGR00769 27 RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTA 106 (472)
T ss_pred HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcH
Confidence 557777766 33578887666655543 37899999999999999988888888877777766332210 00
Q ss_pred --------------------hHHHHHHHHHHHhchhhHhhh-hHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHH
Q 008778 107 --------------------SYWQMCVFLCMGGNSTTWMNT-AVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCS 164 (554)
Q Consensus 107 --------------------s~~~l~~~r~l~Gig~g~~~~-~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~ 164 (554)
+.|...++-+...+-...+.. .-...++|.+. ++-.+-.++...+.++|..+++.+..
T Consensus 107 ~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~ 186 (472)
T TIGR00769 107 LADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIK 186 (472)
T ss_pred HHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133333444444444444443 45577888885 55677889998888999888777765
Q ss_pred hhc
Q 008778 165 ALF 167 (554)
Q Consensus 165 ~l~ 167 (554)
.+.
T Consensus 187 ~~~ 189 (472)
T TIGR00769 187 YFS 189 (472)
T ss_pred HHH
Confidence 543
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.5e-05 Score=80.59 Aligned_cols=120 Identities=11% Similarity=0.101 Sum_probs=90.8
Q ss_pred HHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHh
Q 008778 41 KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG 119 (554)
Q Consensus 41 ~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~G 119 (554)
+..++.+ ...+.+.....+..+ ..++.+++.||+|+|+++..+..+..++.++..+... ++.+.+++.-++.|
T Consensus 253 ~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~l~g 326 (428)
T PF13347_consen 253 TYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP-----GSPWLVLILFILAG 326 (428)
T ss_pred HHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhH
Confidence 3445544 556666555556554 4899999999999999999999999999999888721 37899999999999
Q ss_pred chhhHhhhhHHHHHHhhccC-------C-CccchHhhHhhhhhhHHHHHHHHHhh
Q 008778 120 NSTTWMNTAVLVTCIRNFRR-------N-RGPVSGILKGYVGLSTAIFTDLCSAL 166 (554)
Q Consensus 120 ig~g~~~~~~~~~i~~~fp~-------~-rg~a~gi~~~~~~lg~~i~~~l~~~l 166 (554)
++.+..+......++|..+. + .|...|+.....-++..+++.+.+.+
T Consensus 327 i~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 327 IGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred hhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999998888998887751 1 26667777666666666665555544
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.2e-05 Score=73.12 Aligned_cols=128 Identities=22% Similarity=0.148 Sum_probs=96.1
Q ss_pred hhhhcHHHHHHhcCCCh--hhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchH
Q 008778 32 TFSNYSDALKTLMNLTQ--LELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY 108 (554)
Q Consensus 32 ~~~~~~~~i~~~~~~s~--~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~ 108 (554)
......+.+.++++.+. .+.++......+.... .++.|.+.||+|||+.+..+.....++.+++.+... .+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 94 (338)
T COG0477 20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN-----VGL 94 (338)
T ss_pred hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc-----chH
Confidence 34455666777777666 4677766666666655 689999999999998888888776666666666511 248
Q ss_pred HHHHHHHHHHhchhhHhhhhHHHHHHhhccC--CCccchHhhHh-hhhhhHHHHHHHHH
Q 008778 109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR--NRGPVSGILKG-YVGLSTAIFTDLCS 164 (554)
Q Consensus 109 ~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~--~rg~a~gi~~~-~~~lg~~i~~~l~~ 164 (554)
+.+.+.|+++|++.+...+.....+.+++|+ +|+...++... ...+|..+++.+..
T Consensus 95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T COG0477 95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAG 153 (338)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999996 68888888877 45566655543333
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.1e-05 Score=81.18 Aligned_cols=182 Identities=15% Similarity=0.083 Sum_probs=122.3
Q ss_pred hhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHH
Q 008778 327 EAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWN 404 (554)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~ 404 (554)
+++.++...++++......+....+.+++--.+++.|-.+. .......-.+.+..-+..+++..|+|+-+.+
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~------ 439 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVM------ 439 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhccccee------
Confidence 55666654443332222211111223333345677654332 1123334456667777889999999987765
Q ss_pred HHHHHHHHHHHHHHH-hccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhh-hhhhHHHhhhhHHHH
Q 008778 405 AASQILMAVGYILMA-VALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILN-LPLGSFLFSGLLAGY 482 (554)
Q Consensus 405 ~~~~~l~~~~~~l~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~l~~p~i~g~ 482 (554)
.+++....+=++.+. ..++|.+...-++-|+..+..+..+.+++.+..||+.+.++.|+.... .++|-.+ |.+|+|.
T Consensus 440 ~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~-GslIGG~ 518 (618)
T KOG3762|consen 440 YLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGL-GSLIGGF 518 (618)
T ss_pred eehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcch-hhhhhhh
Confidence 444444433344443 356777777778999999999999999999999999999999999865 4777777 8989999
Q ss_pred HHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 008778 483 LYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTK 530 (554)
Q Consensus 483 i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~ 530 (554)
+.++.+ -+..|.++++.+++.+++...+.+..+
T Consensus 519 ~v~~fg---------------~~ttf~~~giAcl~~l~~~~~iq~~l~ 551 (618)
T KOG3762|consen 519 VVERFG---------------ARTTFRIFGIACLVTLALFISIQLLLK 551 (618)
T ss_pred hheeeh---------------hHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 999987 478898888888887776666554433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.2e-08 Score=99.91 Aligned_cols=135 Identities=24% Similarity=0.365 Sum_probs=102.5
Q ss_pred hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc----cCchhHHHHHHHHhhhcccccch
Q 008778 369 IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA----LPGSLYIGSIIVGLCYGVRLAVT 444 (554)
Q Consensus 369 ~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~l~g~~~g~~~~~~ 444 (554)
...+...++..+|.++.|+++||+|||+.. ..+..+..++.++.... +...+.+..++.|++.|...+..
T Consensus 50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 50 LLTSSFFIGAIVGALIFGFLADRYGRKPAL------IISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred HHHHHHHhhhcccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccc
Confidence 356778899999999999999999999877 66666667776665543 34567788899999999999999
Q ss_pred HHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHH
Q 008778 445 VPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLD 522 (554)
Q Consensus 445 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~ 522 (554)
+.++.|..|+++|+....+......+|..+ +..+ +.......+ ...|+..+.+..+..++.++..
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~-~~~~-~~~~~~~~~-----------~~~Wr~~~~~~~~~~l~~~~~~ 188 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILL-ASLI-GYIVSYYSD-----------NWGWRILLIFGAIPSLLVLLLR 188 (451)
T ss_pred cccccccccccccccccccccccccccccc-cccc-ccccccccc-----------cccccccccccccccccccccc
Confidence 999999999999999999999888888776 5544 332211110 1238888888877776554444
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=4e-05 Score=79.55 Aligned_cols=164 Identities=13% Similarity=0.086 Sum_probs=96.7
Q ss_pred hccHHHHHh-HhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHH-hcc---C-
Q 008778 352 MNNMGQIGL-ALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMA-VAL---P- 423 (554)
Q Consensus 352 ~~~~~~~~~-~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~-~~~---~- 423 (554)
..+++.++. .+|.+.. +..++...+..++..++.|+++||.+.|..-.|++. ..+....++...+.. .+. .
T Consensus 29 ~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~i-l~~~~~~~i~~~l~f~~p~~~~~~ 107 (444)
T PRK09669 29 MLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYL-LWFAIPFGVVCLLTFYTPDFGATG 107 (444)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhH-HHHHHHHHHHHHHHHhCCCCCcch
Confidence 344555554 4788864 346777888999999999999999654433222333 334344444443322 211 1
Q ss_pred --chhHHHHHHHHhhhcccccchHHHHHHhh-CCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCccccc
Q 008778 424 --GSLYIGSIIVGLCYGVRLAVTVPTASELF-GLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVG 500 (554)
Q Consensus 424 --~~~~~~~~l~g~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~ 500 (554)
...++..++++.++........++.+|.. ++++|++..+.-.....+|+.+ ++.+...+....+... .
T Consensus 108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i-~~~~~~pl~~~~~~~~--------~ 178 (444)
T PRK09669 108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLI-VSVIALPLVDILGKGD--------E 178 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCc--------h
Confidence 12233344556666665566777888876 4577888888888888888777 5655444444332110 0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 501 AHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 501 ~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
..+|...+.+.+++.++..+..++.
T Consensus 179 ~~g~~~~~~i~~ii~~v~~~~~~~~ 203 (444)
T PRK09669 179 QKGYFYAMMVMGLLGVVLFFCCFFM 203 (444)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 1247777777777766655544443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.2e-05 Score=74.15 Aligned_cols=121 Identities=10% Similarity=0.015 Sum_probs=81.7
Q ss_pred hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHH-HHHHHHHHhchhhHhhhhHHHHHHhhccCC-Cc
Q 008778 65 GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ-MCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RG 142 (554)
Q Consensus 65 ~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~-l~~~r~l~Gig~g~~~~~~~~~i~~~fp~~-rg 142 (554)
.++.+.+.||+|||+++..+.+++++..++...+... +.+.. ++.+|++.-. .+.+.+.+..|.||.. |+
T Consensus 398 lLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~r----n~~tvllf~arafisg----~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 398 LLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTR----NAYTVLLFTARAFISG----AFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred hhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCc----chhHHHHHHHHHHHhc----hheEEEEecCcccchhhhh
Confidence 6799999999999999999999999999988776433 22333 4456877553 3455667888999964 99
Q ss_pred cchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhhccc
Q 008778 143 PVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRE 195 (554)
Q Consensus 143 ~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (554)
+..|...+..-+|+++.|.++ ........-.+++.+. +++++.++.-++|.
T Consensus 470 tgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~-~~ilagIavcffPi 520 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGA-LFILAGIAVCFFPI 520 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHH-HHHHHHHHheeeee
Confidence 999999999999986654444 3332222333333333 33334444333443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=9.6e-05 Score=74.99 Aligned_cols=188 Identities=12% Similarity=0.030 Sum_probs=115.8
Q ss_pred HHHHHHHHHhhhcchhhhhccHHHHHhHhCC--Cc--chhhHHHHHHHHhHhhHHhhcchhhHhh-hcCCCchhHHHHHH
Q 008778 334 FWILFVSFLCGVGTGLAVMNNMGQIGLALGY--VD--VSIFVSLTSIWGFFGRIISGSVSEYFIK-RAGTPRPIWNAASQ 408 (554)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~--~~~~~~~~~~~~~~g~~~~G~l~Dr~g~-r~~~~~~~~~~~~~ 408 (554)
.|+..+..++...-...+....-+|.+++.. ++ .+...+...++.++++++.|+...|.++ |+.+ ..+.
T Consensus 36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl------i~s~ 109 (488)
T KOG2325|consen 36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL------IVSF 109 (488)
T ss_pred HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH------HHHH
Confidence 3444444343333222333334456666433 32 2347778899999999999999999885 3333 6777
Q ss_pred HHHHHHHHHH-Hhc---c--CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHH
Q 008778 409 ILMAVGYILM-AVA---L--PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGY 482 (554)
Q Consensus 409 ~l~~~~~~l~-~~~---~--~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~ 482 (554)
++++++.++. ... + .+.+.++.++.|+|.|.. +..=.++++..-+++|.++.+.....+.+|.++ ||.+...
T Consensus 110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~il-Gp~~q~~ 187 (488)
T KOG2325|consen 110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIIL-GPTIQLA 187 (488)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHH-hHHHHHH
Confidence 7788887776 332 2 235667777888876654 344456666555788888888888877777777 7755433
Q ss_pred HHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 008778 483 LYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKN 531 (554)
Q Consensus 483 i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~~ 531 (554)
+ .-.+.+.- -......-+.|+.+-++++++.++.++...+..+|.++
T Consensus 188 f-~~Lg~~G~-~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 188 F-TPLGEKGF-MILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred H-hhhcCCce-EEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 3 22221000 00000122458888899999998888877776665544
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.2e-05 Score=69.86 Aligned_cols=133 Identities=19% Similarity=0.207 Sum_probs=80.0
Q ss_pred hcchhhhhccHHHHHhHhCCCcchh--hHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh--
Q 008778 345 VGTGLAVMNNMGQIGLALGYVDVSI--FVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-- 420 (554)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-- 420 (554)
.+..+.+..+-+++-+.+|+++.+. ..+.-.++..+| +..|.+.||++.+... .++.+...++...+..
T Consensus 15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l------~iG~~~~~~GY~~~~l~~ 87 (250)
T PF06813_consen 15 SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVL------LIGAVLGFVGYGLLWLAV 87 (250)
T ss_pred cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHH------HHHHHHHHHHHHHHHHHH
Confidence 3444445555666666789987654 444455666664 7889999999987644 5666666666654432
Q ss_pred cc----Cc--hhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhc
Q 008778 421 AL----PG--SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDA 486 (554)
Q Consensus 421 ~~----~~--~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~ 486 (554)
.+ +. .+.+..++.+.+.............+.|| ++||++.|+.-...+++++++.. +...+.+.
T Consensus 88 ~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~-i~~~~f~~ 157 (250)
T PF06813_consen 88 SGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQ-IYSAFFGD 157 (250)
T ss_pred hCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHH-HHHHHcCC
Confidence 11 11 12222223333222222333334467885 78999999999999999998744 44444433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0035 Score=63.68 Aligned_cols=159 Identities=14% Similarity=0.064 Sum_probs=89.6
Q ss_pred hHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcchh--hHHHHHHHHhHhhHHhhcchhhHhhhcCCCch
Q 008778 324 TIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSI--FVSLTSIWGFFGRIISGSVSEYFIKRAGTPRP 401 (554)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~ 401 (554)
.++..++.|.|..-....++++. ...+-..+..|.+..|+++... .-+.-.+.++.|.++..++.+|+|..+.-.-.
T Consensus 251 ~w~~Y~~q~vflas~alalLY~T-VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~ 329 (432)
T PF06963_consen 251 GWRTYFRQPVFLASFALALLYFT-VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWS 329 (432)
T ss_pred cHHHHHhCHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 44566666655443332233322 3344556677888889987643 55667788889999999999999876543100
Q ss_pred hHHHHHHHHHHHHHHHHHhccC-chhHHHHHHHHhhh--ccccc---chHHHHHHhhCCcchhhHHHHHHhhhhhhHHHh
Q 008778 402 IWNAASQILMAVGYILMAVALP-GSLYIGSIIVGLCY--GVRLA---VTVPTASELFGLKYYGLIYNILILNLPLGSFLF 475 (554)
Q Consensus 402 ~~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~l~g~~~--g~~~~---~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~ 475 (554)
.+.-..+...++..+ ....++ ....+..++.|+.. -+.++ ...-++.|..|+++||+..|.-+..+++...+
T Consensus 330 l~~q~~~L~~~v~~~-~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll- 407 (432)
T PF06963_consen 330 LWWQWVCLALCVVSF-WAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELL- 407 (432)
T ss_pred HHHHHHHHHHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHH-
Confidence 111111111111111 111222 22233333333321 11222 45557789999999999999999999998887
Q ss_pred hhhHHHHHHhc
Q 008778 476 SGLLAGYLYDA 486 (554)
Q Consensus 476 ~p~i~g~i~~~ 486 (554)
..+.+.+...
T Consensus 408 -~~~~~ii~~~ 417 (432)
T PF06963_consen 408 -SFVLTIIFPR 417 (432)
T ss_pred -HHHHHhccCC
Confidence 3355554433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00022 Score=69.14 Aligned_cols=153 Identities=12% Similarity=0.073 Sum_probs=98.2
Q ss_pred HHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHH
Q 008778 357 QIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPGSLYIGSIIVG 434 (554)
Q Consensus 357 ~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g 434 (554)
..++++|+++.+ .....-.....+...+.|.+.||+|||+.. ...+++..+.++.-..++...++++-++-|
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~c------l~~cily~~scl~k~~~~~~~L~~GRvlgG 132 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKAC------LLFCILYSLSCLTKHSSNYPVLLLGRVLGG 132 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHH------HHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 345678888543 344555566777778889999999999754 555666666666555555567888889999
Q ss_pred hhhcccccchHHHHH-Hh----hCCcchhhHHHHHH-hhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHH
Q 008778 435 LCYGVRLAVTVPTAS-EL----FGLKYYGLIYNILI-LNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVF 508 (554)
Q Consensus 435 ~~~g~~~~~~~~~~~-~~----~~~~~~g~~~g~~~-~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f 508 (554)
++....++..-++.. |- +|++..+...+... ..+.+..++ +..++-.+.|..+.. -..+|
T Consensus 133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~-aGv~a~~l~~~~~~g-------------~vaPF 198 (354)
T PF05631_consen 133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIG-AGVVANVLADWFGFG-------------PVAPF 198 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHH-HhHHHHHHHHHhCCC-------------CcchH
Confidence 998888776666553 22 33333444444444 233344444 555666666666521 25678
Q ss_pred HHHHHHHHHHHHHHHHhHHhh
Q 008778 509 VIMAMACIVGFGLDILLAAKT 529 (554)
Q Consensus 509 ~i~~~~~~~~~~~~~~l~~~~ 529 (554)
.....+.+++.++....+++.
T Consensus 199 ~~a~~~l~~~~~~I~~~W~EN 219 (354)
T PF05631_consen 199 DAAIVLLAVAAVLILKTWPEN 219 (354)
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 888888777777666555554
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.6e-05 Score=78.21 Aligned_cols=154 Identities=12% Similarity=-0.035 Sum_probs=107.4
Q ss_pred HhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhc-c--CCCchHHHHHHHHHH
Q 008778 42 TLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSR-K--IQPLSYWQMCVFLCM 117 (554)
Q Consensus 42 ~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~-~--~~~~s~~~l~~~r~l 117 (554)
+.+|+++.+.+.+.....++.+. ....+++.+|++.|+++.++.++.+++.+........ . ..-++.+.++...++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 57899999999966555566654 7899999999999999999999998887654311000 0 000223344456888
Q ss_pred HhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhhcCCC--------hHHHHHHHHHHHHHHHHH
Q 008778 118 GGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADD--------PAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 118 ~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~--------~~~~~~~~~~~~~~~~~~ 188 (554)
.+++.+..+.+....+.+..|+ ++|+..++..+..++|..+++.+++.+.+.. ..+....++.++.++.+.
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~ 440 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP 440 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence 9999999998999999999986 5899999999999999988776555554321 122234444455555555
Q ss_pred HHhhccc
Q 008778 189 AIFFLRE 195 (554)
Q Consensus 189 ~~~~~~~ 195 (554)
..+++|+
T Consensus 441 ~~~llP~ 447 (468)
T TIGR00788 441 LLHLLPR 447 (468)
T ss_pred HHHhCCC
Confidence 5555554
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00017 Score=75.48 Aligned_cols=161 Identities=11% Similarity=0.035 Sum_probs=95.7
Q ss_pred hhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhH----hhhcCCCchhHHHHHHHHHHHHHHHHHhcc
Q 008778 350 AVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYF----IKRAGTPRPIWNAASQILMAVGYILMAVAL 422 (554)
Q Consensus 350 ~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~----g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~ 422 (554)
.+..+++.++.+ .|.+.. +..+....+.+++..++.|+++||. |||+.. +..+...+++++.++....
T Consensus 24 ~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~-----il~g~i~~~i~~~llf~~p 98 (473)
T PRK10429 24 IVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPW-----ILIGTLANSVVLFLLFSAH 98 (473)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchh-----HhhhhHHHHHHHHHHHcCC
Confidence 344556666665 588864 3466777889999999999999965 655432 3444555555544433211
Q ss_pred --C-c----hhHHHHHHHHhhhcccccchHHHHHHhh-CCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCC
Q 008778 423 --P-G----SLYIGSIIVGLCYGVRLAVTVPTASELF-GLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGG 494 (554)
Q Consensus 423 --~-~----~~~~~~~l~g~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~ 494 (554)
+ . ...+..+++++++........++..|.. ++++|.+..+......++++.+ .+.+...+.+..+...
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~-~~~~~~~~~~~~g~~~--- 174 (473)
T PRK10429 99 LFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFV-TAGFTLPFVNYVGGGD--- 174 (473)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCc---
Confidence 1 1 1223344556666666677778888887 5788999888877777777666 4444444433332110
Q ss_pred CcccccccchHHHHHHHHHHHHHHHHHHHH
Q 008778 495 GNTCVGAHCYRLVFVIMAMACIVGFGLDIL 524 (554)
Q Consensus 495 ~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~ 524 (554)
...+|.....+.+++.+++.+..++
T Consensus 175 -----~~~g~~~~~~i~~~~~~~~~~~~~~ 199 (473)
T PRK10429 175 -----RGFGFQMFTLVLIAFFIVSTIITLR 199 (473)
T ss_pred -----hhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 0113666666666555554444433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00019 Score=74.74 Aligned_cols=162 Identities=11% Similarity=0.009 Sum_probs=99.8
Q ss_pred hccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-cc--Cc-
Q 008778 352 MNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-AL--PG- 424 (554)
Q Consensus 352 ~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-~~--~~- 424 (554)
..++..++.+ .|.++. +..+.+.-+.+++.-++.|.++||...|..-.|++.+ .+...+++.+.++.. +. ..
T Consensus 29 ~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il-~g~i~~~i~~~llf~~p~~s~~~ 107 (460)
T PRK11462 29 MLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVL-FGALPFGIVCVLAYSTPDLSMNG 107 (460)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHh-HHHHHHHHHHHHHHhCCCCCcch
Confidence 3445555554 688864 3466777889999999999999986555443334444 444445555444332 21 11
Q ss_pred ---hhHHHHHHHHhhhcccccchHHHHHHhhC-CcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCccccc
Q 008778 425 ---SLYIGSIIVGLCYGVRLAVTVPTASELFG-LKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVG 500 (554)
Q Consensus 425 ---~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~ 500 (554)
...+..+++.+++........++.+|..+ +++|++..+.-.....+|+.+ ++.+...+.+..+... .
T Consensus 108 ~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~-~~~~~~plv~~~g~~~--------~ 178 (460)
T PRK11462 108 KMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGML-STVLMMPLVNLIGGDN--------K 178 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCc--------h
Confidence 12334455667777766677778888765 588999999999888888877 6666555555443210 0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH
Q 008778 501 AHCYRLVFVIMAMACIVGFGLDI 523 (554)
Q Consensus 501 ~~~~~~~f~i~~~~~~~~~~~~~ 523 (554)
..+|.....+.+++.+++.++.+
T Consensus 179 ~~g~~~~~~i~~ii~~i~~~i~~ 201 (460)
T PRK11462 179 PLGFQGGIAVLSVVAFMMLAFCF 201 (460)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 12366666666665555544433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00025 Score=69.87 Aligned_cols=127 Identities=19% Similarity=0.142 Sum_probs=85.8
Q ss_pred hHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-----cc-------Cc-
Q 008778 360 LALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-----AL-------PG- 424 (554)
Q Consensus 360 ~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-----~~-------~~- 424 (554)
.|++.+.. ...+++.. .-...|+..|..||+.+.....+|..++..+..++..+..+.+. .. +.
T Consensus 8 vEL~vpA~lv~~lval~~-~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~ 86 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHY-LVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW 86 (403)
T ss_pred HHhccHHHHHHHHHHHHH-HHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence 45665532 12333333 33457999999999988222223334455666655555444321 12 11
Q ss_pred ----hhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccC
Q 008778 425 ----SLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQA 488 (554)
Q Consensus 425 ----~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~ 488 (554)
.......++|++.+...+...++++|..++|+|+++.++.....-+|.++ +..+.|.+.|.+.
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv-~ai~~g~lL~~~s 153 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIV-SAIVFGRLLDPFS 153 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHH-HHHHHHHHccccC
Confidence 22345566777777777788899999999999999999999999999998 8889999888765
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00027 Score=75.88 Aligned_cols=158 Identities=16% Similarity=0.235 Sum_probs=107.9
Q ss_pred hccHHHHHh-HhCCCcch--hhHHHHHHHHhHhhHHhhcchhh-HhhhcCCCchhHHHHHHHHHHHHHHHHHhcc-C---
Q 008778 352 MNNMGQIGL-ALGYVDVS--IFVSLTSIWGFFGRIISGSVSEY-FIKRAGTPRPIWNAASQILMAVGYILMAVAL-P--- 423 (554)
Q Consensus 352 ~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~-~--- 423 (554)
...+..++. .+|++++. .....+....-+..+++|+++|+ +|+++.+ ..+.++..++..++.... +
T Consensus 7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tI------l~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTI------LYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHhccCcccc
Confidence 334444444 46776543 35555555566677888999997 5666544 555556666666554321 1
Q ss_pred -----chhHHHHHHHHhhhcccccchHHHHHHhhCCc---chhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCC
Q 008778 424 -----GSLYIGSIIVGLCYGVRLAVTVPTASELFGLK---YYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGG 495 (554)
Q Consensus 424 -----~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~ 495 (554)
...+++++++.+|.|+.-+...+...|.++++ .+-..+.+.....++|+++ ++++.+++.+..+
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSli-s~~i~~~l~~~~~------- 152 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLI-STIITPILRGDVG------- 152 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc-------
Confidence 12456777888889998899999999998754 3667888888999999998 8889998875532
Q ss_pred cccc-cccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 496 NTCV-GAHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 496 ~~~~-~~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
|. ...+|..+|.+.+++.+++++....-
T Consensus 153 --~fg~~~~~~~aF~i~~i~m~ia~lvf~~g 181 (654)
T TIGR00926 153 --CFGCQDCYPLAFGVPAILMILALIVFMAG 181 (654)
T ss_pred --ccccCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 11 11359999999998888887765443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00047 Score=59.37 Aligned_cols=100 Identities=12% Similarity=0.005 Sum_probs=78.3
Q ss_pred HHHHHHHhhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHh
Q 008778 56 VVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIR 135 (554)
Q Consensus 56 ~~~~~~~~~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~ 135 (554)
..+....+.+++...+.+++|+|+.+++|.+...+-.... +- ++.+.++...++.|+|.+..+.+...++.+
T Consensus 45 i~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~-------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~ 116 (156)
T PF05978_consen 45 ILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FY-------PNSYTLYPASALLGFGAALLWTAQGTYLTS 116 (156)
T ss_pred HHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hh-------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHH
Confidence 3333444457888899999999999999999887554442 22 567888999999999999999999999998
Q ss_pred hccC-CCccchHhhHhhhhhhHHHHHHHH
Q 008778 136 NFRR-NRGPVSGILKGYVGLSTAIFTDLC 163 (554)
Q Consensus 136 ~fp~-~rg~a~gi~~~~~~lg~~i~~~l~ 163 (554)
.-.+ +|++-.++..+....+.++++.+.
T Consensus 117 ~s~~~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 117 YSTEETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred cCCHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 8864 589999999888887766554443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00016 Score=54.50 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=64.8
Q ss_pred ccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHH
Q 008778 28 GNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLV 98 (554)
Q Consensus 28 g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a 98 (554)
|.. +.|....|.+++|.++|.++.+|+.+...+|+.+ .+...++.++..+|+.+..+.+...+..+.+++.
T Consensus 5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 7888899999999999999999999999999987 7888999999999999999999999999999987
|
Note that many members are hypothetical proteins. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0001 Score=74.30 Aligned_cols=149 Identities=11% Similarity=0.103 Sum_probs=113.4
Q ss_pred HHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHh
Q 008778 41 KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG 119 (554)
Q Consensus 41 ~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~G 119 (554)
.||.+-.+.-.+..+.....+-+. -++++++.+|+|+-+++.+++..+++=.+..++. .|.|..+-.-+++|
T Consensus 398 led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-------~n~W~vLPieilqg 470 (618)
T KOG3762|consen 398 LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-------QNPWMVLPIEILQG 470 (618)
T ss_pred HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-------cCchheeeHHHHHH
Confidence 466665555555344343444443 6788999999999999999999999988888887 89999999999999
Q ss_pred chhhHhhhhHHHHHHhhccCC-CccchHhhHhh-hhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhhcccc
Q 008778 120 NSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGY-VGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRET 196 (554)
Q Consensus 120 ig~g~~~~~~~~~i~~~fp~~-rg~a~gi~~~~-~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (554)
+..+.++.+..++++...|++ |..+.++.... .|+|--+++.+++.++...+-+..|...++.+++.++....++..
T Consensus 471 it~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~ 549 (618)
T KOG3762|consen 471 ITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLL 549 (618)
T ss_pred HHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999865 88899888654 556666666677777776666666666666666655555555443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0007 Score=68.68 Aligned_cols=166 Identities=13% Similarity=0.071 Sum_probs=107.8
Q ss_pred hhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhcc----
Q 008778 350 AVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVAL---- 422 (554)
Q Consensus 350 ~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~---- 422 (554)
....++..++.+ .|.+++ +..+...-+..++.-|+.|.++||..+|+.-.|++.+....-+..+..+++..++
T Consensus 30 ~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~ 109 (467)
T COG2211 30 IVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMT 109 (467)
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccC
Confidence 344556666665 688864 3466677789999999999999998887776677777665554444444443322
Q ss_pred Cc--hhHHHHHHHHhhhcccccchHHHHHHhhC-CcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccc
Q 008778 423 PG--SLYIGSIIVGLCYGVRLAVTVPTASELFG-LKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCV 499 (554)
Q Consensus 423 ~~--~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~ 499 (554)
.. ..++...+.+++|........++.++.-. +++|.+..+.-.....+|+.+ ...+.+.+....+.++.
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l-~~~~~~plv~~~g~~~~------- 181 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLL-VAVLFPPLVKLFGGGDK------- 181 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCcc-------
Confidence 11 33466678888888877666666666543 478899999988888888877 46666666666654321
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHH
Q 008778 500 GAHCYRLVFVIMAMACIVGFGLDIL 524 (554)
Q Consensus 500 ~~~~~~~~f~i~~~~~~~~~~~~~~ 524 (554)
..+|.....+.+++.++.++.+++
T Consensus 182 -~~g~~~~~~~~~vi~~i~~l~~~~ 205 (467)
T COG2211 182 -ALGYQGTALVLGVIGVILLLFCFF 205 (467)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 124666555555555444444433
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0018 Score=66.27 Aligned_cols=104 Identities=12% Similarity=0.118 Sum_probs=60.9
Q ss_pred hHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc----------cCchhHHHHHHHHhhhcc
Q 008778 370 FVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA----------LPGSLYIGSIIVGLCYGV 439 (554)
Q Consensus 370 ~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~----------~~~~~~~~~~l~g~~~g~ 439 (554)
....+.++..+||.+..+.. .-.+|.+. .+...+.=+++...+++.... +.+..++..+++|+..|-
T Consensus 312 ~~~~fNvgD~vGR~~~~~~~-~p~~~~~~--l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 312 CFLLFNLFDWLGRSLTSKFM-WPDEDSRW--LPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHhhhhheeE-eeCCCccc--hHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 66778999999999765431 11111111 111222223333333332211 222446678889998888
Q ss_pred cccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhh
Q 008778 440 RLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSG 477 (554)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p 477 (554)
..+....+.++..+++++..+-.+......+|-.+ |.
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~-Gs 425 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLAL-GA 425 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 77777778888888777777766666666666665 55
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.001 Score=63.50 Aligned_cols=128 Identities=16% Similarity=0.026 Sum_probs=80.2
Q ss_pred hcHHHHH-HhcCCChhhHHH-HHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 008778 35 NYSDALK-TLMNLTQLELNN-LSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM 111 (554)
Q Consensus 35 ~~~~~i~-~~~~~s~~~~~~-~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l 111 (554)
...|++. .+.+++..|+.- +.=+-...+.+ ..+.=.+.|..--|+++++-.+.....-.+.-+. ++.+.+
T Consensus 26 ~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g-------~sV~~m 98 (433)
T KOG3810|consen 26 YLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFG-------PSVKAM 98 (433)
T ss_pred ccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhc-------CCchhe
Confidence 3444444 456677776664 22222223333 3344567888888888777666555555554444 788888
Q ss_pred HHHHHHHhchhhHhhhhHHHHHHhhc-cCCCccchHhhHhhhhhhHHHHHHHHHhhcCCC
Q 008778 112 CVFLCMGGNSTTWMNTAVLVTCIRNF-RRNRGPVSGILKGYVGLSTAIFTDLCSALFADD 170 (554)
Q Consensus 112 ~~~r~l~Gig~g~~~~~~~~~i~~~f-p~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~ 170 (554)
=+.-++.|...+.-. +..+++-.-. |+++.++.|..-++.-.|-.++..+++.+++..
T Consensus 99 QvlE~FyG~~tAaEI-AYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~ 157 (433)
T KOG3810|consen 99 QVLEFFYGPATAAEI-AYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLE 157 (433)
T ss_pred eeehhhcChHHHHHH-hhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhc
Confidence 888888897766653 4445554444 456888888888777677777777777666543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0015 Score=67.21 Aligned_cols=132 Identities=14% Similarity=0.148 Sum_probs=95.6
Q ss_pred HHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHh--hhcccccchHHHHHHhh
Q 008778 375 SIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPGSLYIGSIIVGL--CYGVRLAVTVPTASELF 452 (554)
Q Consensus 375 ~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~--~~g~~~~~~~~~~~~~~ 452 (554)
++...+-.+..|.++||+|||... ....+...+.-....... +. ..++.++ +++..++...++++|..
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L------~~~~~~~~l~~~~~~~~~-~~---~~~~~~l~g~~~~~~s~~~a~vadis 141 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVL------LLPLFGTILPALCLLFQG-YW---FFLLLGLSGGFSAIFSVGFAYVADIS 141 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhH------HHHHHHHHHhHHHHHHHH-HH---Hhhhcccccchhhhhhhhhhheeecc
Confidence 667778889999999999998654 222222222222222212 22 2224444 34455667888899999
Q ss_pred CCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhhhh
Q 008778 453 GLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNI 532 (554)
Q Consensus 453 ~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~~~ 532 (554)
..++|...+|+.+.....+..+ +|.+.+.+.+..+ +..+|.+..+..+++.+......+++..+
T Consensus 142 ~~~~R~~~~gll~~~~~~~~~~-~p~~~~~~~~~~~---------------~a~~f~ia~~~~~~~~~y~~~~l~Esl~~ 205 (463)
T KOG2816|consen 142 SEEERSSSIGLLSGTFGAGLVI-GPALGGYLVKFLG---------------IALVFLIAAASGILSLLYMLLFLPESLQE 205 (463)
T ss_pred chhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhcC---------------chHHHHHHHHHHHHHHHHHhhccccccCc
Confidence 9999999999999999999998 8999999998876 78899999999998888887777765443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.022 Score=55.40 Aligned_cols=48 Identities=17% Similarity=0.121 Sum_probs=38.3
Q ss_pred cccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccC
Q 008778 440 RLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQA 488 (554)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~ 488 (554)
.+...++..+.+.++..-|+-+.+.++..++|+-. =..++.++.|...
T Consensus 386 ~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~w-p~tv~l~l~D~lt 433 (510)
T KOG3574|consen 386 MFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNW-PGTVALWLADGLT 433 (510)
T ss_pred HHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCc-HHHHHHHhcccCc
Confidence 33455556688889999999999999999999987 4667788888764
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.011 Score=59.04 Aligned_cols=124 Identities=10% Similarity=-0.043 Sum_probs=79.7
Q ss_pred cHHHHHHhcCCChhhHHHH-HHHHHHHHhhhhhhhhhccc----CCchHHH-HHHHHHHHHHHHHHHHHhhcc---CCCc
Q 008778 36 YSDALKTLMNLTQLELNNL-SVVKDIGKAFGLLAGLASDR----IPAPIIL-LIGSLEGLVGYGAQWLVVSRK---IQPL 106 (554)
Q Consensus 36 ~~~~i~~~~~~s~~~~~~~-~~~~~~~~~~~~~~G~l~dr----~G~r~~~-~~g~~l~~~~~~~~~~a~~~~---~~~~ 106 (554)
+.+++.++.|++..-.+.+ ...-..|..++|+.|..+|| |||||.+ ..+..+..++..+..++.+-. .+..
T Consensus 54 y~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~ 133 (498)
T KOG0637|consen 54 YLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNE 133 (498)
T ss_pred cccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCc
Confidence 5667778899988877774 33444455669999999996 8877764 455567777777766652211 0001
Q ss_pred -------hHHHHHHHHHHHhchhhHhhhhHHHHHHhhc-cCCCcc-chHhhHhhhhhhHHHH
Q 008778 107 -------SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNF-RRNRGP-VSGILKGYVGLSTAIF 159 (554)
Q Consensus 107 -------s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~f-p~~rg~-a~gi~~~~~~lg~~i~ 159 (554)
...++.++--+.=++.-....++-..+.|.. ++++-+ +.+.....+++|+.++
T Consensus 134 ~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLG 195 (498)
T KOG0637|consen 134 RKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLG 195 (498)
T ss_pred ccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceee
Confidence 1222333333344555566677778899998 443333 9999988888988553
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.26 Score=50.24 Aligned_cols=47 Identities=13% Similarity=0.046 Sum_probs=34.6
Q ss_pred cccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhcc
Q 008778 440 RLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQ 487 (554)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~ 487 (554)
.+....+.-+...+|..-|+-+-+.|+..++|+-- -..+.=++.|..
T Consensus 422 mFVai~AFharISDP~IGGTYMTLLNTvSNLGGtW-P~~~vL~lVD~f 468 (544)
T PF13000_consen 422 MFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTW-PRTFVLWLVDYF 468 (544)
T ss_pred HHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCc-hHHHHHHHhhhc
Confidence 44455566688888999999999999999999974 344444555554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0016 Score=48.72 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=44.1
Q ss_pred hhhcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHH
Q 008778 33 FSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEG 88 (554)
Q Consensus 33 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~ 88 (554)
.-.+.|...++.|++..|++.+.....+... ..|++|.++||+++++.++.+..++
T Consensus 19 ~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 19 LYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3345566677899999999997766666665 4899999999999999888776654
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.013 Score=58.47 Aligned_cols=111 Identities=15% Similarity=0.116 Sum_probs=79.1
Q ss_pred hHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc-cC---c-----hhHHHHHHHHhhhccc
Q 008778 370 FVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA-LP---G-----SLYIGSIIVGLCYGVR 440 (554)
Q Consensus 370 ~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~-~~---~-----~~~~~~~l~g~~~g~~ 440 (554)
...++.+..+.-.+.+-|+.||+|-|... .++..+.+++..+=... .+ . ....+-.+.+...-..
T Consensus 84 lsmIym~v~vp~gf~~mw~ldk~GLR~a~------llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fi 157 (480)
T KOG2563|consen 84 LSMIYMVVSVPFGFAAMWILDKFGLRTAL------LLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFI 157 (480)
T ss_pred HHHHHHHHHHHHhhHHHHhhcccchHHHH------HHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHh
Confidence 44566777788888899999999998765 67777788887653321 12 2 2234555555555555
Q ss_pred ccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhcc
Q 008778 441 LAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQ 487 (554)
Q Consensus 441 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~ 487 (554)
....+=+....|++++|+.+..+..+.+.+|.++ +-++...+..+.
T Consensus 158 m~lPskiA~~WF~~~qra~A~~~~v~~n~LGvav-g~llppilV~~~ 203 (480)
T KOG2563|consen 158 LGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAV-GFLLPPILVPSS 203 (480)
T ss_pred hccccHHHHhhCCcchhhhhhhHHHhcchHHHHH-HhhccceecCCC
Confidence 4555557788899999999999999999999988 776666666554
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.11 Score=51.80 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=60.5
Q ss_pred hHHH-HHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHH-------hccCchhHHHHHHHHhhhcccc
Q 008778 370 FVSL-TSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMA-------VALPGSLYIGSIIVGLCYGVRL 441 (554)
Q Consensus 370 ~~~~-~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~-------~~~~~~~~~~~~l~g~~~g~~~ 441 (554)
.... +.+...+|++...++-++-.| ... .....=.+..-.+.+.. ..+.+.......++|+..|-..
T Consensus 287 ~~~l~fN~~d~vG~~~a~~~~~~~~r-~l~----i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt 361 (406)
T KOG1479|consen 287 LVFLSFNVFDLIGSILAALLTWPDPR-KLT----IPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT 361 (406)
T ss_pred HHHHHhHHHHHhhhhhhhcccCCCCc-eeh----HHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh
Confidence 3444 788999998888877655422 211 11111122222222111 1234466777888898888777
Q ss_pred cchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHH
Q 008778 442 AVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYL 483 (554)
Q Consensus 442 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i 483 (554)
+....++++.+++++ ..+.|......-.+|...|. +.+++
T Consensus 362 sl~m~~aPk~v~~~e-~e~aG~~m~~fl~~Gl~~G~-~~s~l 401 (406)
T KOG1479|consen 362 SLIMMYAPKQVKPSE-KEAAGNLMVFFLVGGLALGS-LLSWV 401 (406)
T ss_pred hheehhcCCCCChHH-HHHHHHHHHHHHHHHHHHhh-HHHHH
Confidence 777788888876555 45556666555555554233 44443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0073 Score=52.05 Aligned_cols=108 Identities=8% Similarity=-0.010 Sum_probs=79.2
Q ss_pred hHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHhhhcccccchHHHHH
Q 008778 370 FVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPGSLYIGSIIVGLCYGVRLAVTVPTAS 449 (554)
Q Consensus 370 ~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~ 449 (554)
..++......+..++.+.+.+++|.|+.+ .++.+...+-.......+.+.++...++.|++.+..+.....++.
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm------~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt 115 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSM------ILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLT 115 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHH
Confidence 44455556677778888999999998765 554444433332223345567788889999999999999999999
Q ss_pred HhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHH
Q 008778 450 ELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLY 484 (554)
Q Consensus 450 ~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~ 484 (554)
+...++++++..|+.....+.+.++ |..+.-.+.
T Consensus 116 ~~s~~~~~~~~~~ifw~i~~~s~i~-G~~~~~~~~ 149 (156)
T PF05978_consen 116 SYSTEETIGRNTGIFWAIFQSSLIF-GNLFLFFIF 149 (156)
T ss_pred HcCCHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999999999999998888887776 665544433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.002 Score=48.13 Aligned_cols=59 Identities=14% Similarity=0.105 Sum_probs=46.7
Q ss_pred HHHhhhcchhhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCC
Q 008778 340 SFLCGVGTGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGT 398 (554)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~ 398 (554)
.+++.++....+.++++.+.++.|+++.. ...++..+...++.+++|+++||.++++..
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~ 68 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVI 68 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence 34445555556778899999999998654 467778889999999999999999998754
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.02 Score=59.05 Aligned_cols=149 Identities=19% Similarity=0.191 Sum_probs=91.2
Q ss_pred HhHhCCCcchh--hHHHHHHHHhHhhHHhhcchhhHh---hhcCCCchhHHHHHHHHHHHHHHHHHh-cc----CchhHH
Q 008778 359 GLALGYVDVSI--FVSLTSIWGFFGRIISGSVSEYFI---KRAGTPRPIWNAASQILMAVGYILMAV-AL----PGSLYI 428 (554)
Q Consensus 359 ~~~~g~~~~~~--~~~~~~~~~~~g~~~~G~l~Dr~g---~r~~~~~~~~~~~~~~l~~~~~~l~~~-~~----~~~~~~ 428 (554)
.+++|.+++.. ..+...+- -...++.|.++|-+. .||+ ..+.++.++..+....+.. +. .....+
T Consensus 17 ~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~----~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~ 91 (433)
T PF03092_consen 17 KDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRK----PYMIIGWLLGAVSALVLALLPASESSAAIAVV 91 (433)
T ss_pred HHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcch----HHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence 34589887653 22222322 345788999999864 3322 2334444444333332222 11 223334
Q ss_pred HHHHHHhhhcccccchHHHHHHhhC--CcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHH
Q 008778 429 GSIIVGLCYGVRLAVTVPTASELFG--LKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRL 506 (554)
Q Consensus 429 ~~~l~g~~~g~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~ 506 (554)
...+..+++...-...-+...|... ++.+|...+.....+.+|+.+ +..+.|.+.+..+ ++.
T Consensus 92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv-~~~l~G~l~~~~~---------------~~~ 155 (433)
T PF03092_consen 92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLV-GSLLSGPLLDSFG---------------PQG 155 (433)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH-HHHhhhhhhhcCC---------------CeE
Confidence 4455555655555556666666652 233778888888899999998 8889999988875 677
Q ss_pred HHHHHHHHHHHHHHHHHHhHHh
Q 008778 507 VFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 507 ~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
.|.+.+.+..+..+..+++..+
T Consensus 156 ~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 156 VFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred EehHHHHHHHHHHHHHHHhhhh
Confidence 8888887777776666666554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.056 Score=52.02 Aligned_cols=142 Identities=24% Similarity=0.288 Sum_probs=89.4
Q ss_pred cHHHHHhHhCCCc----chhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-cc--Cchh
Q 008778 354 NMGQIGLALGYVD----VSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-AL--PGSL 426 (554)
Q Consensus 354 ~~~~~~~~~g~~~----~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-~~--~~~~ 426 (554)
..+.+..+.+.+. .....+...+...++.+..|.+.||.|||+.. ..+.....++.++... .+ ....
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
T COG0477 24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVL------IIGLLLFLLGTLLLALAPNVGLALL 97 (338)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHH------HHHHHHHHHHHHHHHhCccchHHHH
Confidence 3444555554443 34466777788888889999999999887432 2222222233222222 22 2234
Q ss_pred HHHHHHHHhhhcccccchHHHHHHhhCC-cchhhHHHHHHh-hhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccch
Q 008778 427 YIGSIIVGLCYGVRLAVTVPTASELFGL-KYYGLIYNILIL-NLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCY 504 (554)
Q Consensus 427 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~-~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~ 504 (554)
.+.....|++.+...+....+..+.+++ ++++...+.... ...++..+ +|.+.+.+.+. .. ..|
T Consensus 98 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~------------~~~ 163 (338)
T COG0477 98 LILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLAL-GPLLAGLLLGA-LL------------WGW 163 (338)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-Hh------------cch
Confidence 4445557788887778888899999976 678888888888 46667776 78777777666 21 127
Q ss_pred HHHHHHHHHHH
Q 008778 505 RLVFVIMAMAC 515 (554)
Q Consensus 505 ~~~f~i~~~~~ 515 (554)
+..|.+.....
T Consensus 164 ~~~~~~~~~~~ 174 (338)
T COG0477 164 RAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHH
Confidence 77665555444
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.049 Score=54.60 Aligned_cols=159 Identities=9% Similarity=0.068 Sum_probs=97.4
Q ss_pred hccHHHHHhH--hCCCcchh---hHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhcc-Cch
Q 008778 352 MNNMGQIGLA--LGYVDVSI---FVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVAL-PGS 425 (554)
Q Consensus 352 ~~~~~~~~~~--~g~~~~~~---~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~ 425 (554)
-+++.+|+.+ .|+++.+. +.-.-.=.....-+....+.|.++.|+.+ ++..+...+...++...+ ...
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpvi------il~~~~~i~t~~lll~~~sv~~ 96 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVI------ILQALSYIITWLLLLFGTSVLA 96 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHHHHHHCcHHH
Confidence 3556666654 67764332 11111222334556678899999988754 333333333333333333 334
Q ss_pred hHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchH
Q 008778 426 LYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYR 505 (554)
Q Consensus 426 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~ 505 (554)
+-+.-+..|++... -....+++-...++++.-++.+....+.-+|.++ +..++-.+....+. +|.
T Consensus 97 mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~-s~~lgQllvs~~~~-------------sy~ 161 (412)
T PF01770_consen 97 MQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFI-SSLLGQLLVSFGGV-------------SYF 161 (412)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCC-------------CHH
Confidence 44555566665444 2356677877888999999999888888888776 66443333433332 388
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhh
Q 008778 506 LVFVIMAMACIVGFGLDILLAAKTKN 531 (554)
Q Consensus 506 ~~f~i~~~~~~~~~~~~~~l~~~~~~ 531 (554)
...++......++++..+++.+.+|.
T Consensus 162 ~L~~isl~~~~~a~~~~~fLP~~~~S 187 (412)
T PF01770_consen 162 QLNYISLASVSLALLIALFLPMPKRS 187 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 88888888888888888888765543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=1.8 Score=46.12 Aligned_cols=156 Identities=14% Similarity=0.027 Sum_probs=92.2
Q ss_pred hhcHHHHHHhcCCChhhHHHH-HHHHHHHHhhhhhhhhhcccC-CchHHHHHHHHHHHHHHHHHHHHhhccC--------
Q 008778 34 SNYSDALKTLMNLTQLELNNL-SVVKDIGKAFGLLAGLASDRI-PAPIILLIGSLEGLVGYGAQWLVVSRKI-------- 103 (554)
Q Consensus 34 ~~~~~~i~~~~~~s~~~~~~~-~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~g~~l~~~~~~~~~~a~~~~~-------- 103 (554)
+.....+.+++|.+..+..-. ..+........++.+.++|-| ||-+++.++.++..+|..+..++..-..
T Consensus 58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~ 137 (571)
T KOG1237|consen 58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF 137 (571)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence 455567888999888665553 333333333468999999975 8888999999988888665554422110
Q ss_pred -------CCchH---HHHHHHHHHHhchhhHhhhhHHHHHHhhccC----C-Cc--cchHhhHhhhhhhHHHHHHHHHhh
Q 008778 104 -------QPLSY---WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR----N-RG--PVSGILKGYVGLSTAIFTDLCSAL 166 (554)
Q Consensus 104 -------~~~s~---~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~----~-rg--~a~gi~~~~~~lg~~i~~~l~~~l 166 (554)
..++- ..++...-+..+|.|..-++....-.|-|++ + +. .-...+....++|..+. ......
T Consensus 138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a-~t~~vy 216 (571)
T KOG1237|consen 138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLA-QTVLVY 216 (571)
T ss_pred CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHH-HHHHHh
Confidence 00122 2344556667789999888888888898872 1 23 23344444445555433 333333
Q ss_pred c-CCChHHHHHHHHHHHHHHHHHHH
Q 008778 167 F-ADDPAKFLFMLAIVPFVVCLGAI 190 (554)
Q Consensus 167 ~-~~~~~~~~~~~~~~~~~~~~~~~ 190 (554)
. ++.+|..-+-.......++++.+
T Consensus 217 iq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 217 IQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred hhhcccceeeccHHHHHHHHHHHHH
Confidence 3 34556665555554444444433
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.019 Score=58.00 Aligned_cols=106 Identities=18% Similarity=0.270 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHh---c-cC------chhHHHHHHHHhhhcccccchHHHHHHhhCCc---chhhHHHHHHhhhhh
Q 008778 404 NAASQILMAVGYILMAV---A-LP------GSLYIGSIIVGLCYGVRLAVTVPTASELFGLK---YYGLIYNILILNLPL 470 (554)
Q Consensus 404 ~~~~~~l~~~~~~l~~~---~-~~------~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~ 470 (554)
+..+.++..+|.+++.. . .. ..+++++.++++|.|+.=+...+..+|.++++ ++...+.......++
T Consensus 4 I~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~ 83 (372)
T PF00854_consen 4 ILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINI 83 (372)
T ss_dssp HHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhh
Confidence 35666667777766332 1 11 35788999999999999999999999999875 366677788899999
Q ss_pred hHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHh
Q 008778 471 GSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILL 525 (554)
Q Consensus 471 g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l 525 (554)
|+.+ ++.+.+++.++.+ |...|.+.++..+++++..+.-
T Consensus 84 G~~~-~~~~~~~i~~~~~---------------~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 84 GSLF-SPTLVPYIQQNYG---------------WFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHH-HHHCCCHHHHCS----------------HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHh-hcccchhhccccc---------------hhhhhhHHHHHHHHHHHHHHhC
Confidence 9998 8999999998886 9999999998888877755443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.27 Score=50.18 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=41.5
Q ss_pred hhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHH
Q 008778 467 NLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNIYTKIY 537 (554)
Q Consensus 467 ~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~~~~~~~~ 537 (554)
.=.++..+ +|++.|.+.+..+ +..+..+.++..+++++.-+++..+..+...+..
T Consensus 157 IDL~ckll-aPl~vG~l~t~~s---------------~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~ 211 (432)
T PF06963_consen 157 IDLFCKLL-APLFVGLLMTFAS---------------PVIAAIFIAGWNLASVFVEYFLLARVYNSVPALA 211 (432)
T ss_pred HHHHHHHH-HHHHHHHHhhccC---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhc
Confidence 33557777 9999999998775 7888888999999999888887766544443333
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.86 E-value=2.1 Score=44.51 Aligned_cols=52 Identities=17% Similarity=0.061 Sum_probs=36.5
Q ss_pred ChhhHHHHHHHHHH--HHhhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHH
Q 008778 47 TQLELNNLSVVKDI--GKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLV 98 (554)
Q Consensus 47 s~~~~~~~~~~~~~--~~~~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a 98 (554)
+++.+..+=+...+ ...+..+..++.+|+++++++-+....+.....+.++.
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~v 109 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFV 109 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554333333 33457889999999999999888888777777777665
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.34 Score=51.00 Aligned_cols=120 Identities=17% Similarity=0.162 Sum_probs=63.9
Q ss_pred hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHH-HHHHHHH-H-hcc--C--chhHHHHHH
Q 008778 362 LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILM-AVGYILM-A-VAL--P--GSLYIGSII 432 (554)
Q Consensus 362 ~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~-~~~~~l~-~-~~~--~--~~~~~~~~l 432 (554)
+|.+.. +..++.+..+..+|..++|++.++..++... .-+...+. .+...++ . ... . ...+...++
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~-----~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 119 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVA-----VELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL 119 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455532 3466777778888888887776443333211 11111111 1111111 1 111 1 122344455
Q ss_pred HHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHh-ccC
Q 008778 433 VGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYD-AQA 488 (554)
Q Consensus 433 ~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~-~~~ 488 (554)
.++..|...|...-+..+.. .++.|...|-.+....+|+++ |+++.+++.- ..|
T Consensus 120 ~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~-G~l~~~~vLlp~lG 174 (521)
T PRK03612 120 IGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALV-GGLAFPFLLLPRLG 174 (521)
T ss_pred HHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHH-HHHHHHHHHHHhcc
Confidence 66777776665444444322 234677788888888999988 8888887654 555
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.0034 Score=66.18 Aligned_cols=169 Identities=18% Similarity=0.194 Sum_probs=2.2
Q ss_pred cHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhcc----C----
Q 008778 354 NMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVAL----P---- 423 (554)
Q Consensus 354 ~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~----~---- 423 (554)
.++++-++++++.. ..+.+.+-++.++..+...++.+|.. |+.++..+.++++++.++++.+| +
T Consensus 25 ~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~h------rprwig~g~~~~~~g~~l~~lPhf~~~~y~~~ 98 (539)
T PF03137_consen 25 SLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGH------RPRWIGIGALLMGLGSLLFALPHFLSGPYSYE 98 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------CcceeeecHHHHHHHHHHHhccHhhcCCCccc
Confidence 34445556777643 44667777877777777777666532 23345777777888776644210 0
Q ss_pred -------------------------------------------chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhH
Q 008778 424 -------------------------------------------GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLI 460 (554)
Q Consensus 424 -------------------------------------------~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~ 460 (554)
..++++-++.|+|....+++-.+++=|..++++.+.-
T Consensus 99 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splY 178 (539)
T PF03137_consen 99 EASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLY 178 (539)
T ss_dssp -----------------------------------------------------SSS------------------------
T ss_pred cccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccc
Confidence 0123445567777777788888899999999999999
Q ss_pred HHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCC----Ccccccc---cchHHHHHHHHHHHHHHHHHHHHhHHhh
Q 008778 461 YNILILNLPLGSFLFSGLLAGYLYDAQATPTAGG----GNTCVGA---HCYRLVFVIMAMACIVGFGLDILLAAKT 529 (554)
Q Consensus 461 ~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~----~~~~~~~---~~~~~~f~i~~~~~~~~~~~~~~l~~~~ 529 (554)
.|+......+|.++ |-.+++...+..-+..... .-...++ +.|...|++.+.+.++..+...++.++.
T Consensus 179 iGi~~~~~~lGPa~-Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~l 253 (539)
T PF03137_consen 179 IGILYAMSILGPAL-GFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKL 253 (539)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred hhhhhHHhhccHHH-HHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 99999999888887 7767666554332111000 1111122 4688889888888887777776665543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.5 Score=40.87 Aligned_cols=23 Identities=4% Similarity=0.036 Sum_probs=17.4
Q ss_pred CchHHhhhhhhhHHHHHHHHHhh
Q 008778 322 DHTIFEAMWTVDFWILFVSFLCG 344 (554)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~ 344 (554)
..+.++.+|++..|...+.+...
T Consensus 84 ~~s~~~~LK~K~tw~w~~~Yg~w 106 (267)
T PF07672_consen 84 KPSYKSILKEKETWKWILIYGIW 106 (267)
T ss_pred cchHHHHHccchHHHHHHHHHHH
Confidence 35678999999998877766543
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.0052 Score=60.17 Aligned_cols=104 Identities=14% Similarity=0.109 Sum_probs=3.1
Q ss_pred hHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-----------ccCchhHHHHHHHHhhhc
Q 008778 370 FVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-----------ALPGSLYIGSIIVGLCYG 438 (554)
Q Consensus 370 ~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-----------~~~~~~~~~~~l~g~~~g 438 (554)
.+..+.++..+||.+.++.-=+..+++.+ +...+.=+++...+++... .+.+..++..+++|+..|
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l---~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNG 263 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWL---WILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNG 263 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccH---HHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccc
Confidence 45678999999999988742110111111 1111111222122222111 122345567778888888
Q ss_pred ccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhh
Q 008778 439 VRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSG 477 (554)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p 477 (554)
-..+......++..+++++..+-.+....-.+|-.+ |.
T Consensus 264 yl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~-Gs 301 (309)
T PF01733_consen 264 YLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFI-GS 301 (309)
T ss_dssp ---HHHH--------------------------------
T ss_pred hhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 877777778888888777766655555555555554 44
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.39 Score=49.63 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=37.1
Q ss_pred chHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHh
Q 008778 443 VTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYD 485 (554)
Q Consensus 443 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~ 485 (554)
.....+.|.+..++..+-+++.....++|..+ ++.+..++.+
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~-sg~~~~~~~~ 190 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIF-SGRTIKYFSK 190 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 66778899999999999999999999999998 8878777664
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.11 Score=52.32 Aligned_cols=116 Identities=11% Similarity=0.033 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC--CchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccCC----CccchHhhHhhh
Q 008778 79 IILLIGSLEGLVGYGAQWLVVSRKIQ--PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN----RGPVSGILKGYV 152 (554)
Q Consensus 79 ~~~~~g~~l~~~~~~~~~~a~~~~~~--~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~~----rg~a~gi~~~~~ 152 (554)
+++++|.++..+|.++..++...... +.+.+.++++.++.++|.|..-+.......|-|+++ |.....++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 57888999999999997666433211 123467888888999999999999999999999642 455667778888
Q ss_pred hhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhhcc
Q 008778 153 GLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLR 194 (554)
Q Consensus 153 ~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (554)
++|+.++..+...+-++.+|.+.|.++.+..+++++..+.-+
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 999876655555555677898888888888777777655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.16 Score=54.47 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=74.2
Q ss_pred HHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCC-CCCCCccccc---ccc
Q 008778 428 IGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATP-TAGGGNTCVG---AHC 503 (554)
Q Consensus 428 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~-~~~~~~~~~~---~~~ 503 (554)
.+-++.|+|....++.-.+++=|...+++.+.-.|+.+.+..+|.++ |-++++.....+-+. ..+.+-+..+ .+.
T Consensus 242 ~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPai-GfllgS~~l~lYvD~~~~~~~it~~DPrWIGA 320 (735)
T KOG3626|consen 242 LGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAI-GFLLGSFCLKLYVDFGLSPIGITPTDPRWIGA 320 (735)
T ss_pred HHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHH-HHHHHHHHHHeeeccccCCCCCCCCCcchhhH
Confidence 34456666666677788888889998999999999999999999888 777777766554332 1111112222 258
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 008778 504 YRLVFVIMAMACIVGFGLDILLAAKTKN 531 (554)
Q Consensus 504 ~~~~f~i~~~~~~~~~~~~~~l~~~~~~ 531 (554)
|...|++++.+.++..+..+++.++.++
T Consensus 321 WWlGFLi~g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 321 WWLGFLICGALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 9999999999999998888887655443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=2.3 Score=44.92 Aligned_cols=148 Identities=11% Similarity=-0.014 Sum_probs=74.1
Q ss_pred HHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHH---HHHHHHHHHHHhhccCCCchHHHHHHHH
Q 008778 40 LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLE---GLVGYGAQWLVVSRKIQPLSYWQMCVFL 115 (554)
Q Consensus 40 i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l---~~~~~~~~~~a~~~~~~~~s~~~l~~~r 115 (554)
+..-+|-+..+.+.+.+.+..+..+ +.+++++.++.-++. ..+-+.+ ..++..+....... .......++..-
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~-~~~e~~i~l~~~~~~~ll~~~~~~--~~~~~~~~~~~~ 117 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF-VAVELLLALLGGLSALILYAAFAF--QGLSRLLLYVLV 117 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3445777777777766666666654 667777653322222 1111111 11111111111000 001112223334
Q ss_pred HHHhchhhHhhhhHHHHHHhhccCCCccchHhhHhhhhhhHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHHHHHH
Q 008778 116 CMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFAD--DPAKFLFMLAIVPFVVCLGAI 190 (554)
Q Consensus 116 ~l~Gig~g~~~~~~~~~i~~~fp~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~ 190 (554)
++.++-.|+..|.......+.-.++-|...|-..+...+|+++++.+.+.++-. +.....+.++.+..+++++..
T Consensus 118 ~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~ 194 (521)
T PRK03612 118 LLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFL 194 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 556777777766665555443333456667777777788887777776665442 335555555555444444433
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.32 E-value=1.8 Score=44.44 Aligned_cols=94 Identities=19% Similarity=0.235 Sum_probs=72.1
Q ss_pred hhhhhhhc---ccCCchHHHHHHHHHHHHHHHHHHHHhhccCC-----------CchHHHHHHHHHHHhchhhHhhhhHH
Q 008778 65 GLLAGLAS---DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQ-----------PLSYWQMCVFLCMGGNSTTWMNTAVL 130 (554)
Q Consensus 65 ~~~~G~l~---dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~-----------~~s~~~l~~~r~l~Gig~g~~~~~~~ 130 (554)
+.+.+.+. +|+|+++++.++..+..++.++.........+ .+++....+..+++|++-+.......
T Consensus 296 g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~ 375 (461)
T KOG3098|consen 296 GLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRY 375 (461)
T ss_pred HHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHH
Confidence 55555554 56899999999999999998887665332221 13466667788999999999998999
Q ss_pred HHHHhhccCCCccchHhhHhhhhhhHHH
Q 008778 131 VTCIRNFRRNRGPVSGILKGYVGLSTAI 158 (554)
Q Consensus 131 ~~i~~~fp~~rg~a~gi~~~~~~lg~~i 158 (554)
.++...+|++|..+..+...-.++++.+
T Consensus 376 ~ii~~~~~~~~~~~fsi~kfyq~~~s~v 403 (461)
T KOG3098|consen 376 VIIALLYPDDRAQAFSLFKFYQSVASCV 403 (461)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 9999999999998888887766666644
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.54 E-value=0.87 Score=45.93 Aligned_cols=122 Identities=17% Similarity=0.150 Sum_probs=76.1
Q ss_pred hccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhh----HhhhcCCCchhHHHHHHHHHHHHHHHHHh-----
Q 008778 352 MNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEY----FIKRAGTPRPIWNAASQILMAVGYILMAV----- 420 (554)
Q Consensus 352 ~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr----~g~r~~~~~~~~~~~~~~l~~~~~~l~~~----- 420 (554)
..+.+++.++.|.+.. +.....--+.+.+-+++.|..+|| +|||+.. .. ....+..+++.++..
T Consensus 52 lsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPf----I~-~~s~~i~~~l~Lig~aaDig 126 (498)
T KOG0637|consen 52 LSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPF----IL-AGSLLIAVSLFLIGYAADIG 126 (498)
T ss_pred hccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccch----HH-HhhHHHHHHHhhhhhHhhhh
Confidence 4678899999999764 334444556778889999999998 5555543 33 333334444444332
Q ss_pred ----ccCc----hhHHHHHHHHh-----hhcccccchHHHHHHhhCCcchhh-HHHHHHhhhhhhHHHhhhhH
Q 008778 421 ----ALPG----SLYIGSIIVGL-----CYGVRLAVTVPTASELFGLKYYGL-IYNILILNLPLGSFLFSGLL 479 (554)
Q Consensus 421 ----~~~~----~~~~~~~l~g~-----~~g~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~~~g~~l~~p~i 479 (554)
.+.. ...+...++|+ +........=++..|+..++++.+ +.+.......+|+.+ |-..
T Consensus 127 ~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvL-GY~~ 198 (498)
T KOG0637|consen 127 LLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVL-GYAL 198 (498)
T ss_pred HHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhccee-eeec
Confidence 1111 13334444443 333444566678899988887777 888888888888887 5533
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.54 E-value=34 Score=34.50 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=19.8
Q ss_pred hhhccHHHHHhHh-CCCcchhhHHHHHHHHhHhhHHhhcchhhHhhh
Q 008778 350 AVMNNMGQIGLAL-GYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKR 395 (554)
Q Consensus 350 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r 395 (554)
+++...+++.+++ +.+.+......+.+...+..++.-.+--+...|
T Consensus 36 ~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~ 82 (406)
T KOG1479|consen 36 MFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTR 82 (406)
T ss_pred hhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455554 333433333444444444444444444444333
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=87.28 E-value=1.8 Score=32.78 Aligned_cols=66 Identities=14% Similarity=0.053 Sum_probs=44.1
Q ss_pred hhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhc
Q 008778 350 AVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVA 421 (554)
Q Consensus 350 ~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~ 421 (554)
.+...+|.+.++.+++.. +...+...++..+|.+...++.++..+++.. ..+.++..+..+.+...
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~------~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLL------RAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH------HHHHHHHHHHHHHHHHH
Confidence 456678888888888754 4577888999999999998887775444332 44444444444444443
|
Note that many members are hypothetical proteins. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.25 E-value=6.2 Score=37.87 Aligned_cols=113 Identities=13% Similarity=0.040 Sum_probs=63.2
Q ss_pred hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccCCCccc
Q 008778 65 GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPV 144 (554)
Q Consensus 65 ~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~~rg~a 144 (554)
.+.+-...||+.--.=+.+..++-+.+..+.+++ ++.++=+.+-.+..++.|..-..-. ..+..+| ..+
T Consensus 79 Kl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs-------~s~~~sL~GV~~aSissGlGEiTFL-~lss~Y~---~~~ 147 (409)
T KOG3880|consen 79 KLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFS-------NSVPMSLLGVVFASISSGLGEITFL-ALSSRYP---SIV 147 (409)
T ss_pred HHhchhhhhhcccchHHHHHHHHHhcceEEEEec-------cchhHHHhhhhhhhhcCCcceeehh-hhhccCC---Cce
Confidence 6677778888543222444556667777777777 7778777777777777777653332 3334443 334
Q ss_pred hHhhHhhhhhhHHHHHHHHHhhc---CCChHHHHHHHHHHHHHHHHH
Q 008778 145 SGILKGYVGLSTAIFTDLCSALF---ADDPAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 145 ~gi~~~~~~lg~~i~~~l~~~l~---~~~~~~~~~~~~~~~~~~~~~ 188 (554)
..-+++|.|.++.+++.-...+- +-.....++....+|.+..+.
T Consensus 148 i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~ 194 (409)
T KOG3880|consen 148 IAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFA 194 (409)
T ss_pred eccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHH
Confidence 55566676776656543322221 112344444444444444433
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=85.84 E-value=8.6 Score=38.82 Aligned_cols=115 Identities=12% Similarity=-0.013 Sum_probs=72.8
Q ss_pred cCCChhhHHHHHHHHHHHHhhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhh
Q 008778 44 MNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTT 123 (554)
Q Consensus 44 ~~~s~~~~~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g 123 (554)
+.-...+.-++...+.+|..++=-+..+. |+ |++.+.+.+-..--.++..-+..... ++.|.+++.-+..|+-.|
T Consensus 276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~-ri--r~lwils~LQ~~nl~~~~l~s~~~fi--psi~ivf~lif~eGLlGG 350 (402)
T PF02487_consen 276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF-RI--RRLWILSLLQVINLVFLLLQSWYRFI--PSIWIVFVLIFYEGLLGG 350 (402)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcceeee-eh--hhHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHhhh
Confidence 44445567777777777765421111222 33 44444443322222221111111111 678888888999999999
Q ss_pred HhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHH
Q 008778 124 WMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLC 163 (554)
Q Consensus 124 ~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~ 163 (554)
..|.-....+.+-.| ++|..++|....+-++|..+++.++
T Consensus 351 a~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~ 391 (402)
T PF02487_consen 351 ASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLG 391 (402)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999988885 5799999999999888887766554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.81 E-value=5.2 Score=39.60 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhhcchhhhhccHHHHHhHhCCC--cchhhHHHHHHHHhHhhHHhhcchh-----hHhhhcCCCchhHHHH
Q 008778 334 FWILFVSFLCGVGTGLAVMNNMGQIGLALGYV--DVSIFVSLTSIWGFFGRIISGSVSE-----YFIKRAGTPRPIWNAA 406 (554)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~g~~~~G~l~D-----r~g~r~~~~~~~~~~~ 406 (554)
+..+..-+..... -++.....|.+++..|.+ +.+.....+. -..-.+++..+.| |+|||+....+
T Consensus 33 illLl~LYllQGi-P~GL~~~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp----- 104 (510)
T KOG3574|consen 33 ILLLLFLYLLQGI-PLGLIGAIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVP----- 104 (510)
T ss_pred HHHHHHHHHHcCC-chhHhhhhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeee-----
Confidence 3444333433332 234555778888866654 2222111111 1123577888889 99999875322
Q ss_pred HHHHHHHHHHHHHh------c---cCchhHHH---HHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHH
Q 008778 407 SQILMAVGYILMAV------A---LPGSLYIG---SIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFL 474 (554)
Q Consensus 407 ~~~l~~~~~~l~~~------~---~~~~~~~~---~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l 474 (554)
+..+.+..++++.. . ..+...+. ..+.-|.....-...-.++.....+++.|-+.--....+.+|.++
T Consensus 105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL 184 (510)
T KOG3574|consen 105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFL 184 (510)
T ss_pred hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHh
Confidence 22222222222221 1 11122222 223333333222234445566667788887776666666777766
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 554 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-06 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 5e-06
Identities = 58/407 (14%), Positives = 118/407 (28%), Gaps = 142/407 (34%)
Query: 13 KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSV--VKDIGKAFGLLAGL 70
K+L ++ + + + T Y + L N Q+ +V ++ K L L
Sbjct: 92 KFL--MSPIKTEQRQPSMMT-RMYIEQRDRLYNDNQV-FAKYNVSRLQPYLK---LRQAL 144
Query: 71 ASDRIPAPIILLIGSLEGLVGYGAQWLVV----SRKIQPLSYWQMCVFLCMGGNSTTWMN 126
R PA +L+ +G++G G W+ + S K+Q ++ +F W+
Sbjct: 145 LELR-PAKNVLI----DGVLGSGKTWVALDVCLSYKVQCKMDFK--IF---------WL- 187
Query: 127 TAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLF---------M 177
N + P + +L+ L I + S K +
Sbjct: 188 ---------NLKNCNSPET-VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 178 LAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYF-------------SIINTVAIVVAL 224
L P+ CL L V + + F + + ++
Sbjct: 238 LKSKPYENCL---LVLLN------V-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 225 YLQVYDFLP--NKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTE-PDVEEQQ 281
++ + E +L +K + L+ + + P E
Sbjct: 288 HISLDHHSMTLTPDEVKSL--------------------LLK-Y-LDCRPQDLP--REVL 323
Query: 282 VVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFW--ILFV 339
P ++++A E ++ A W D W +
Sbjct: 324 TTNPR-----------------RLSIIA-ESIRDGL----------ATW--DNWKHVNCD 353
Query: 340 SFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVS--------LTSIWG 378
+ + L V+ + + +S+F L+ IW
Sbjct: 354 KLTTIIESSLNVLEPAEYRKM---FDRLSVFPPSAHIPTILLSLIWF 397
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 554 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.97 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.93 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.93 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.38 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.36 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.29 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.25 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.21 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.85 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.68 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=296.50 Aligned_cols=392 Identities=15% Similarity=0.050 Sum_probs=285.3
Q ss_pred chhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHH
Q 008778 12 GKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGL 89 (554)
Q Consensus 12 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~ 89 (554)
.+|..+....+..+..+.. +.++.+.|.+.+++ .+..+.+++.+...++..+ +++.|++.||+|||++++++.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 3455555555555554444 67788889999999 9999999988777787765 8999999999999999999999999
Q ss_pred HHHHHHHH----HhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHH
Q 008778 90 VGYGAQWL----VVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCS 164 (554)
Q Consensus 90 ~~~~~~~~----a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~ 164 (554)
++.+++++ + ++++.++++|+++|++.+...+....++.|++| ++|++++|+...+.++|.++++++.+
T Consensus 104 ~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 104 AVMLFMGFVPWAT-------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHCHHHH-------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHhhhhcc-------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 7 789999999999999999999999999999998 56999999999999999988888877
Q ss_pred hhcCCCh-HHHHHHHHHHHHHHHH-HHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhH
Q 008778 165 ALFADDP-AKFLFMLAIVPFVVCL-GAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALI 242 (554)
Q Consensus 165 ~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
.+....+ |++.+++..+..++.. +..+++++.+.+...
T Consensus 177 ~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 216 (451)
T 1pw4_A 177 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL---------------------------------------- 216 (451)
T ss_dssp HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCC----------------------------------------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCC----------------------------------------
Confidence 7665555 7766666554444333 333333333221100
Q ss_pred HHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCC
Q 008778 243 FSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGED 322 (554)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (554)
++++ +.+. . .+++.+ + ++++....++
T Consensus 217 --------------------------~~~~---------~~~~-------~----~~~~~~-~-------~~~~~~~~~~ 242 (451)
T 1pw4_A 217 --------------------------PPIE---------EYKN-------D----YPDDYN-E-------KAEQELTAKQ 242 (451)
T ss_dssp --------------------------CSCT---------TTCC-------C-------------------------CCTH
T ss_pred --------------------------CChh---------hhcc-------c----ccccch-h-------hhhccccccc
Confidence 0000 0000 0 000000 0 0000000111
Q ss_pred chHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhH--hhhcC
Q 008778 323 HTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYF--IKRAG 397 (554)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~--g~r~~ 397 (554)
...++++++|.+|.+.+..++..........+.+.+.++ +|+++. ....+...++.++++++.|++.||+ ++|+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 322 (451)
T 1pw4_A 243 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 322 (451)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred chHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 124778899999988888777766666777888888887 788754 3467788899999999999999999 87764
Q ss_pred CCchhHHHHHHHHHH-HHHHHHHhc---cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhh-hH
Q 008778 398 TPRPIWNAASQILMA-VGYILMAVA---LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPL-GS 472 (554)
Q Consensus 398 ~~~~~~~~~~~~l~~-~~~~l~~~~---~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~ 472 (554)
. ..+..+.. ++.+++... +.....+..++.|++.+...+....++.|.+|++++|+++|+.+....+ +.
T Consensus 323 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 396 (451)
T 1pw4_A 323 T------GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 396 (451)
T ss_dssp H------HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH
Confidence 3 33333333 444443332 2224456667788887777777888999999999999999999999999 99
Q ss_pred HHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHH
Q 008778 473 FLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAA 527 (554)
Q Consensus 473 ~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~ 527 (554)
.+ +|.+.|.+.|..+ |+..|++.+++.+++.++.+++.+
T Consensus 397 ~~-~~~~~g~l~~~~g---------------~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 397 VA-ASAIVGYTVDFFG---------------WDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HH-HHHHHHHHHHSSC---------------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhcC---------------cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98 8999999999886 899999999888888777665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=285.93 Aligned_cols=368 Identities=11% Similarity=0.051 Sum_probs=267.9
Q ss_pred cchhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHH
Q 008778 11 AGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG 88 (554)
Q Consensus 11 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~ 88 (554)
+++|..+.......+..+.. ..++.+.|.+++++|++.++.+++.+.+.++..+ .++.|++.||+|||++++++.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 44555555555555555554 6788889999999999999999988888888765 999999999999999999999999
Q ss_pred HHHHHHH---HHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHH
Q 008778 89 LVGYGAQ---WLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCS 164 (554)
Q Consensus 89 ~~~~~~~---~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~ 164 (554)
+++.+++ +++ ++++.+++.|+++|++.+...+....++.|++|+ +|++++|+...+.++|..+++++.+
T Consensus 102 ~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 102 ALGAALFWPAAEI-------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccc-------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 555 7899999999999999999999999999999984 6999999999999999988888777
Q ss_pred hhc-CCCh-------------------------HHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHH
Q 008778 165 ALF-ADDP-------------------------AKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTV 218 (554)
Q Consensus 165 ~l~-~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (554)
.+. ...+ |++.++.......+..+..++.
T Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~------------------------- 229 (438)
T 3o7q_A 175 SLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT------------------------- 229 (438)
T ss_dssp HHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 665 3221 2322222211111111100000
Q ss_pred HHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccc
Q 008778 219 AIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVV 298 (554)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (554)
+.|++ . ++++
T Consensus 230 -------------------------------------------------~~p~~-~-------~~~~------------- 239 (438)
T 3o7q_A 230 -------------------------------------------------KFPAL-Q-------SDNH------------- 239 (438)
T ss_dssp -------------------------------------------------CCCCC-T-------TTCC-------------
T ss_pred -------------------------------------------------cCCcc-c-------cccc-------------
Confidence 22222 0 0000
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHH-HhHh-CCCcc--hhhHHHH
Q 008778 299 AVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQI-GLAL-GYVDV--SIFVSLT 374 (554)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~--~~~~~~~ 374 (554)
+++ ++.+...+.++++++|.+|...+..++..........+.+.+ .++. |+++. ....+..
T Consensus 240 -~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 304 (438)
T 3o7q_A 240 -SDA--------------KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGT 304 (438)
T ss_dssp -CCS--------------STTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred -ccc--------------cccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHH
Confidence 000 000112345788899999998888877777677777888888 7775 88754 3466778
Q ss_pred HHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHhhhcccccchHHHHHHhhCC
Q 008778 375 SIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGL 454 (554)
Q Consensus 375 ~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~ 454 (554)
.++..+++++.|++.||+++|+.. ..+.++.+++.+++...+.....+..++.|++.+..++...++..|.+|+
T Consensus 305 ~~~~~~~~~~~g~l~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 378 (438)
T 3o7q_A 305 MVCFFIGRFTGTWLISRFAPHKVL------AAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQ 378 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHH------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGG
T ss_pred HHHHHHHHHHHHHHHHHhcchHHH------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 899999999999999999998754 44555555555554443333445556788888888888888888999975
Q ss_pred cchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHH
Q 008778 455 KYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVG 518 (554)
Q Consensus 455 ~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~ 518 (554)
+ ++.+.++.. ...+++.+ +|.+.|.+.|..++ |+..|++.+++.++.
T Consensus 379 ~-~~~~~~~~~-~~~~g~~~-~~~~~g~l~~~~g~--------------~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 379 D-TKYGSSFIV-MTIIGGGI-VTPVMGFVSDAAGN--------------IPTAELIPALCFAVI 425 (438)
T ss_dssp G-HHHHHHHHH-HTTHHHHH-HHHHHHHHHHHHTS--------------SGGGGHHHHHHHHHH
T ss_pred c-ccchhhHHH-HHHHHHHH-HHHHHHHHHHHhcc--------------hHHHHHHHHHHHHHH
Confidence 5 888888877 66788888 89999999999864 677787766554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=270.41 Aligned_cols=424 Identities=11% Similarity=0.030 Sum_probs=262.4
Q ss_pred hhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCC--------ChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHH
Q 008778 13 KWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNL--------TQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILL 82 (554)
Q Consensus 13 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~--------s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~ 82 (554)
.|.+.+.+.+-.+..|.. ..++...|.++++++. ++++.+++.+.+.+|..+ ++++|+++||+|||++++
T Consensus 10 ~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~ 89 (491)
T 4gc0_A 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 344444333333334433 4456677888887743 234566777777888866 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccC-----------CCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHh
Q 008778 83 IGSLEGLVGYGAQWLVVSRKI-----------QPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKG 150 (554)
Q Consensus 83 ~g~~l~~~~~~~~~~a~~~~~-----------~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~ 150 (554)
++.+++.+++++++++..... -.+++++++++|+++|+|.|...+....+++|+.|+ +|++..++...
T Consensus 90 ~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~ 169 (491)
T 4gc0_A 90 IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQF 169 (491)
T ss_dssp HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhh
Confidence 999999999999885210000 016899999999999999999999999999999985 69999999999
Q ss_pred hhhhhHHHHHHHHHhhcC--------CChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHH
Q 008778 151 YVGLSTAIFTDLCSALFA--------DDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVV 222 (554)
Q Consensus 151 ~~~lg~~i~~~l~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (554)
+..+|..+...+...... .++|++.+....++.++.++..++++|+|++...+++.++..+..
T Consensus 170 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l--------- 240 (491)
T 4gc0_A 170 AIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGIL--------- 240 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHH---------
T ss_pred hhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhH---------
Confidence 988888665555444332 245777777777777777777777777665432211111111000
Q ss_pred HHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccc
Q 008778 223 ALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVED 302 (554)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (554)
++... ++ +.++ +..
T Consensus 241 ---------------------------------------------~~~~~----~~--~~~~---------------~~~ 254 (491)
T 4gc0_A 241 ---------------------------------------------RKIMG----NT--LATQ---------------AVQ 254 (491)
T ss_dssp ---------------------------------------------HHHHH----HH--HHHH---------------HHH
T ss_pred ---------------------------------------------HHhcC----Cc--hhHH---------------HHH
Confidence 00000 00 0000 000
Q ss_pred hhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHH-HHHHHhhhcchhhhhccHHHHHhHhCCCcch--hhHHHHHHHHh
Q 008778 303 TVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWIL-FVSFLCGVGTGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGF 379 (554)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~ 379 (554)
...+...++++ .......++.+..... ....+........+..+.+.+.+..+.+... ......++...
T Consensus 255 --~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (491)
T 4gc0_A 255 --EIKHSLDHGRK------TGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINL 326 (491)
T ss_dssp --HHHHHHHHHHH------HTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhhhh------hhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHH
Confidence 00000000000 0011222333333332 2333333444444555666677777766432 24456678889
Q ss_pred HhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHH---hc-cCc-hhHHHHHHHHhhhccc-ccchHHHHHHhhC
Q 008778 380 FGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMA---VA-LPG-SLYIGSIIVGLCYGVR-LAVTVPTASELFG 453 (554)
Q Consensus 380 ~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~---~~-~~~-~~~~~~~l~g~~~g~~-~~~~~~~~~~~~~ 453 (554)
++.++.+++.||+|||+.. ..+...+.++.+.+. .. .+. ...+..+++..+++.. .++...+.+|.+|
T Consensus 327 ~~~~~~~~l~dr~Grr~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fP 400 (491)
T 4gc0_A 327 TFTVLAIMTVDKFGRKPLQ------IIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFP 400 (491)
T ss_dssp HHHHHHHHHHHHHCSHHHH------HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhhcCcchh------ccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC
Confidence 9999999999999999754 333333444333322 11 222 2222333333333333 3456678899999
Q ss_pred CcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhhhhH
Q 008778 454 LKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNIY 533 (554)
Q Consensus 454 ~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~~~~ 533 (554)
.+.|+++.|+....+.+++++ ++.+.+.+.+..... ....+...|++.+++++++.+..+++.+|+|.+.
T Consensus 401 t~~R~~~~g~~~~~~~~~~~i-~~~~~p~l~~~~~~~---------~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 401 NAIRGKALAIAVAAQWLANYF-VSWTFPMMDKNSWLV---------AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp TTTHHHHHHHHHHHHHHHHHH-HHTHHHHHCHHHHHH---------HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred HhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---------hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence 999999999999999999998 787777665432100 0001456788999999999998888889988765
Q ss_pred HH
Q 008778 534 TK 535 (554)
Q Consensus 534 ~~ 535 (554)
-+
T Consensus 471 Le 472 (491)
T 4gc0_A 471 LE 472 (491)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=256.37 Aligned_cols=412 Identities=14% Similarity=0.080 Sum_probs=254.7
Q ss_pred cHHHHHHh-----cCCChhhHHHHHHHHHHHHhh-hhhhhhhccc-CCchHHHHHHHHHHHHHHHHHHHHhhccCCCchH
Q 008778 36 YSDALKTL-----MNLTQLELNNLSVVKDIGKAF-GLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY 108 (554)
Q Consensus 36 ~~~~i~~~-----~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr-~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~ 108 (554)
..+.++++ +|++..+.+++.+.+.++..+ +++.|+++|| +|||+++..+.++.+++.++++++ +++
T Consensus 36 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 108 (491)
T 4aps_A 36 LLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-------FGA 108 (491)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-------CST
T ss_pred HHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-------hhH
Confidence 33445555 999999999987777777765 8999999999 899999999999999999998876 789
Q ss_pred HHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CC--CccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 008778 109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RN--RGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVV 185 (554)
Q Consensus 109 ~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~--rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~ 185 (554)
+.++++|+++|+|.+...+....++.|++| ++ |+.+.++...+.++|..+++++.+.+.+..+|++.+....+..++
T Consensus 109 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~ 188 (491)
T 4aps_A 109 SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFI 188 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 45 677888888999999988888888887767788888877666655
Q ss_pred HHHHHhhccccCCC-C--Ccc---hhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccc
Q 008778 186 CLGAIFFLRETTPA-S--TVD---EEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPV 259 (554)
Q Consensus 186 ~~~~~~~~~~~~~~-~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (554)
..+..++.++...+ . ..+ ++.+.....+..+......++..+. .
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~----------------------------~-- 238 (491)
T 4aps_A 189 GLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVV----------------------------M-- 238 (491)
T ss_dssp HHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHH----------------------------H--
T ss_pred HHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHH----------------------------H--
Confidence 55544433222111 1 000 1111111122111100000000000 0
Q ss_pred hhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHH
Q 008778 260 YSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFV 339 (554)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (554)
.. .+..+ .++... .... ..............++. ..+..+..+....+.+.+
T Consensus 239 ---~~---~~~~~--~~~~~~-~~~~---------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 290 (491)
T 4aps_A 239 ---NL---VGWNS--LPAYIN-LLTI---------------VAIAIPVFYFAWMISSV----KVTSTEHLRVVSYIPLFI 290 (491)
T ss_dssp ---HH---HSSCC--TTHHHH-HHHH---------------HHHHHHHHHHHHHC----------------CTTHHHHHH
T ss_pred ---Hh---ccCcc--cccchh-hhhH---------------HHHHHHHHHHHHHhhcc----cccHHHHHHHHHHHHHHH
Confidence 00 11100 000000 0000 00000000000000000 000011112222333333
Q ss_pred HHHhhhcchhhhhccHHHHHhH-hCCC--cchhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHH
Q 008778 340 SFLCGVGTGLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYI 416 (554)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~-~g~~--~~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~ 416 (554)
..++...........++.+.++ .+.+ +.....+...+...++.++.|++.||++||+.. +...+..+..+.++++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~-~~~~~~~~~~~~~~~~~ 369 (491)
T 4aps_A 291 AAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS-SPTKFAVGLMFAGLSFL 369 (491)
T ss_dssp HHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHHHH
Confidence 3333333334455566777765 4554 344566778888899999999999999988643 22233344555555544
Q ss_pred HHHhc----------cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhc
Q 008778 417 LMAVA----------LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDA 486 (554)
Q Consensus 417 l~~~~----------~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~ 486 (554)
++... +.....+..++.|++.+...+....++.|.+|++++|++.|+.+....+|..+ +|.+.+.+.|.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-~~~~~~~~~~~ 448 (491)
T 4aps_A 370 LMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL-NAQLVTLYNAK 448 (491)
T ss_dssp TTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH-HHHHGGGGGGS
T ss_pred HHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcc
Confidence 33221 22345567778888888888888999999999999999999999999999998 89888887765
Q ss_pred cCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 008778 487 QATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTK 530 (554)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~ 530 (554)
. +...|.+++++++++.++.+++.++.+
T Consensus 449 ~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 449 S----------------EVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp S----------------TTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred c----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 677888888888777776666554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=247.58 Aligned_cols=327 Identities=14% Similarity=0.045 Sum_probs=243.4
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
..+....|.+.+++|.|.++.+++.+...++..+ +++.|++.||+|||+++..+..+..++.++.+++ ++++
T Consensus 17 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~ 89 (375)
T 2gfp_A 17 TIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSLT 89 (375)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred HHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccHH
Confidence 5666777889999999999999987777777754 8999999999999999999999999999999988 8999
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (554)
.+++.|+++|++.+...+.....+.|++| ++|++++++...+.++|..+++++.+.+.+..+|+..+....+..++..+
T Consensus 90 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 57999999999999999988888877776555676666554443333222
Q ss_pred HHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhccc
Q 008778 189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL 268 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (554)
...+ .
T Consensus 170 ~~~~---------------------------------------------------------------------------~ 174 (375)
T 2gfp_A 170 SMAR---------------------------------------------------------------------------W 174 (375)
T ss_dssp CCCC---------------------------------------------------------------------------S
T ss_pred HHHH---------------------------------------------------------------------------H
Confidence 1100 0
Q ss_pred ccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcch
Q 008778 269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348 (554)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (554)
.|++ . ++++ ++++...+.++++++|.+|...+..++.....
T Consensus 175 ~~~~-~-------~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (375)
T 2gfp_A 175 MPET-R-------PVDA-------------------------------PRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGI 215 (375)
T ss_dssp SCCC-S-------TTTC-------------------------------CCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccc-C-------CCCc-------------------------------ccccHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 1111 0 0000 00001123367888999998887777666555
Q ss_pred hhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHH-HHHHHH--HHHh--
Q 008778 349 LAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQIL-MAVGYI--LMAV-- 420 (554)
Q Consensus 349 ~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l-~~~~~~--l~~~-- 420 (554)
.....+.|.+.++ +|+++. ....+...++..+++++.|++.||++++. ..+..+ ...+.. ....
T Consensus 216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 287 (375)
T 2gfp_A 216 AAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--------WQSVICCLLAGLLMWIPDWFG 287 (375)
T ss_dssp HHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--------HHHHHHHHHTSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhc
Confidence 5666666777665 677643 34667778899999999999999998732 121211 111211 1111
Q ss_pred -ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccC
Q 008778 421 -ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQA 488 (554)
Q Consensus 421 -~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~ 488 (554)
.+.+...+..++.|++.+...+....+..|.+| +++|++.|+.+...+++..+ +|.+.|.+.|..+
T Consensus 288 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 288 VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGV-LASLSAMLPQTGQ 354 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHC-CSTTCTHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHH-HHHHHHHHhcCCc
Confidence 123345567778899999989999999999997 89999999999999999998 8999999988764
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-26 Score=233.91 Aligned_cols=358 Identities=12% Similarity=0.090 Sum_probs=219.7
Q ss_pred hhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHH---HHHhhccCCCchH
Q 008778 33 FSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQ---WLVVSRKIQPLSY 108 (554)
Q Consensus 33 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~---~~a~~~~~~~~s~ 108 (554)
++.....+++++|+|..+.+++.+...++..+ ++++|+++||+|||++++++..+++++.... .++ +..
T Consensus 27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~-------~~~ 99 (417)
T 2cfq_A 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG-------PLL 99 (417)
T ss_dssp TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH-------HHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 34444446778999999999987777777754 8999999999999999999888776533221 222 111
Q ss_pred -HHHHHHHHHHhchhhHhhhhHHHHHHhhcc---CCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 008778 109 -WQMCVFLCMGGNSTTWMNTAVLVTCIRNFR---RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV 184 (554)
Q Consensus 109 -~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp---~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ 184 (554)
..+...+++.|++.+..++.....+.++.+ ++|+.+.|....+..+|..+++++.+.+.+ .+|+..+++..++.+
T Consensus 100 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~ 178 (417)
T 2cfq_A 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCAL 178 (417)
T ss_dssp HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHH
Confidence 123456777777777766655555666664 357888898887788888887777665543 123333332222111
Q ss_pred HHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhh
Q 008778 185 VCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIK 264 (554)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (554)
+.++..++
T Consensus 179 ~~~~~~~~------------------------------------------------------------------------ 186 (417)
T 2cfq_A 179 ILAVLLFF------------------------------------------------------------------------ 186 (417)
T ss_dssp THHHHSCS------------------------------------------------------------------------
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 11111000
Q ss_pred hcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhh
Q 008778 265 SWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCG 344 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (554)
.+|++ .... ++++. .++ + +++....+.++++++|.+|...+..++.
T Consensus 187 ---~~~~~-~~~~---~~~~~------------~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (417)
T 2cfq_A 187 ---AKTDA-PSSA---TVANA------------VGA-N--------------HSAFSLKLALELFRQPKLWFLSLYVIGV 232 (417)
T ss_dssp ---SCCCC-SCSS---CSSSS------------SSS-C--------------CCCCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---cCccc-cccc---ccccc------------ccc-c--------------cccccHHHHHHHhcCCchhhHHHHHHHH
Confidence 11111 0000 00000 000 0 0000112346788899988776654433
Q ss_pred hcchhhhhccHHHHHhHh-CCC---cc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHH
Q 008778 345 VGTGLAVMNNMGQIGLAL-GYV---DV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILM 418 (554)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~-g~~---~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~ 418 (554)
......+..+.+.++++. +.. .. ....+...++..++.+..|+++||+++|+.. ..+..++++..+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l------~~~~~~~~~~~~~~ 306 (417)
T 2cfq_A 233 SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL------LLAGTIMSVRIIGS 306 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH------HHHHHHHHHHHHHH
Confidence 333333334566666543 221 11 2244566678888999999999999998754 44445555554444
Q ss_pred HhccC-chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHH-HhhhhhhHHHhhhhHHHHHHhccCCCCCCCCc
Q 008778 419 AVALP-GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNIL-ILNLPLGSFLFSGLLAGYLYDAQATPTAGGGN 496 (554)
Q Consensus 419 ~~~~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~ 496 (554)
...+. ..+.+..++.+++.+...+....++.|.+|++.+|+++|+. +....+|+.+ +|.+.|.+.|..+
T Consensus 307 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~-gp~l~G~l~~~~g-------- 377 (417)
T 2cfq_A 307 SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF-MSVLAGNMYESIG-------- 377 (417)
T ss_dssp TTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH-HTHHHHTHHHHSH--------
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH-hhhhHHHHHHhcC--------
Confidence 33222 23334444556665555555677899999999999999995 8888899998 8999999999765
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhH
Q 008778 497 TCVGAHCYRLVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 497 ~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~ 526 (554)
|+..|.+++++.+++.++.+...
T Consensus 378 -------~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 378 -------FQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred -------cHHHHHHHHHHHHHHHHHHHhhh
Confidence 88899998888888777655443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=227.72 Aligned_cols=151 Identities=17% Similarity=0.037 Sum_probs=126.5
Q ss_pred hcHHHHHHhcC------CChhhHHHHHHHHHHHHhh-hhhhhhhcccC-CchHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 008778 35 NYSDALKTLMN------LTQLELNNLSVVKDIGKAF-GLLAGLASDRI-PAPIILLIGSLEGLVGYGAQWLVVSRKIQPL 106 (554)
Q Consensus 35 ~~~~~i~~~~~------~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~-G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~ 106 (554)
.+.+.+++++| ++..+.+++.+.+.++..+ .++.|++.||+ |||+++.++.++.+++.++++++ +
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~ 106 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-------E 106 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-------S
T ss_pred HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-------c
Confidence 34445778899 9999999987777777765 89999999999 99999999999999999998887 6
Q ss_pred -hHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHh---hHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHH
Q 008778 107 -SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGI---LKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIV 181 (554)
Q Consensus 107 -s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi---~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~ 181 (554)
+++.+++.|+++|++.+...+.....+.|++|+ +|+++.+. ...+.++|.++++++.+.+.+..+|++.+.+..+
T Consensus 107 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~ 186 (524)
T 2xut_A 107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGV 186 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999999999999999999999999975 68877666 8888899998888887777776778888877776
Q ss_pred HHHHHHHHHhh
Q 008778 182 PFVVCLGAIFF 192 (554)
Q Consensus 182 ~~~~~~~~~~~ 192 (554)
..++..+..++
T Consensus 187 ~~~~~~~~~~~ 197 (524)
T 2xut_A 187 LMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHH
Confidence 66555554433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=8e-13 Score=135.76 Aligned_cols=176 Identities=16% Similarity=0.056 Sum_probs=134.1
Q ss_pred hhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHH
Q 008778 331 TVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQ 408 (554)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 408 (554)
.+.++...+..+........+...++.+.+++ .++. +...+...++..++.+..|+++||+|||+.+ ..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH------HHHH
Confidence 33444444444444444344455566677777 6643 4477888999999999999999999999755 5666
Q ss_pred HHHHHHHHHHHh----c-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHH
Q 008778 409 ILMAVGYILMAV----A-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYL 483 (554)
Q Consensus 409 ~l~~~~~~l~~~----~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i 483 (554)
++.+++.++... . +.+.+++..++.|++.+...+...+++.|.+++++|+++.|+......+|..+ +|.+.+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l 178 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 666666666544 3 44567788899999999999999999999999999999999999999999998 89999998
Q ss_pred HhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHh
Q 008778 484 YDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
.+..++ |++.|++.+++.++..++.++..++
T Consensus 179 ~~~~g~--------------w~~~f~~~~~~~~~~~~~~~~~~~~ 209 (451)
T 1pw4_A 179 MAWFND--------------WHAALYMPAFCAILVALFAFAMMRD 209 (451)
T ss_dssp HHHTCC--------------STTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHhcc--------------HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 877642 8999999988877766665555444
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=134.00 Aligned_cols=172 Identities=15% Similarity=0.219 Sum_probs=134.9
Q ss_pred hHHHHHHHHHhhhcchhhhhccHHHHHhH------hCCCcc--hhhHHHHHHHHhHhhHHhhcchhh-HhhhcCCCchhH
Q 008778 333 DFWILFVSFLCGVGTGLAVMNNMGQIGLA------LGYVDV--SIFVSLTSIWGFFGRIISGSVSEY-FIKRAGTPRPIW 403 (554)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr-~g~r~~~~~~~~ 403 (554)
.+|.+....++.....+.....++.+.++ +|.++. +...+...++..+++++.|+++|| +|||+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~----- 88 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV----- 88 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH-----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH-----
Confidence 45666555555555555566667777654 687754 347788899999999999999999 8999865
Q ss_pred HHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcc--hhhHHHHHHhhhhhhHHHhhhhHH
Q 008778 404 NAASQILMAVGYILMAVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKY--YGLIYNILILNLPLGSFLFSGLLA 480 (554)
Q Consensus 404 ~~~~~~l~~~~~~l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~l~~p~i~ 480 (554)
..+.++.+++.++.... +...+++..++.|++.+...+...+++.|.+++++ ++.+.++.+...++|..+ +|.+.
T Consensus 89 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~ 166 (491)
T 4aps_A 89 -FWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI-APLIV 166 (491)
T ss_dssp -HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred -HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH-HHHHH
Confidence 66666667776666554 44567788889999999999999999999999988 778888899999999998 89999
Q ss_pred HHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhH
Q 008778 481 GYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 481 g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~ 526 (554)
+.+.+..+ |++.|++.++..+++.+..++..
T Consensus 167 ~~l~~~~g---------------~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 167 GAAQEAAG---------------YHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHSC---------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhh---------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99998876 99999998877777766655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7.8e-12 Score=127.86 Aligned_cols=181 Identities=14% Similarity=0.055 Sum_probs=127.2
Q ss_pred HHHHHHhhhcchhhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHH
Q 008778 337 LFVSFLCGVGTGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVG 414 (554)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~ 414 (554)
+...++.............|.+.+++|.++.. ...+...++..++.+..|+++||+|||+.+ ..+.++.+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l------~~~~~~~~~~ 104 (438)
T 3o7q_A 31 LCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI------ITGLFLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH------HHHHHHHHHH
Confidence 33333333333334445567777888988653 477888999999999999999999999865 6666666666
Q ss_pred HHHH---Hhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHH-hccCC
Q 008778 415 YILM---AVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLY-DAQAT 489 (554)
Q Consensus 415 ~~l~---~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~-~~~~~ 489 (554)
.++. ... +.+.+++..++.|++.+...+...+++.|.+++++|+.+.|+......+|..+ +|.+.+.+. +..+.
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH-HHHHTTHHHHTSSCC
T ss_pred HHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccc
Confidence 6655 433 33466778899999999999999999999999999999999999999999999 899999888 44321
Q ss_pred CCCCC---Ccc-------cccccchHHHHHHHHHHHHHHHHHHHH
Q 008778 490 PTAGG---GNT-------CVGAHCYRLVFVIMAMACIVGFGLDIL 524 (554)
Q Consensus 490 ~~~~~---~~~-------~~~~~~~~~~f~i~~~~~~~~~~~~~~ 524 (554)
..... ... .....+|++.|++.+++.++..++.++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000 000012788888777666655554433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.6e-12 Score=127.63 Aligned_cols=168 Identities=11% Similarity=0.113 Sum_probs=129.6
Q ss_pred HHHHhhhcchhhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHH
Q 008778 339 VSFLCGVGTGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYI 416 (554)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~ 416 (554)
...++.......+...++.+.+++|.++.. ...+...++..++.+..|+++||+|||+.+ ..+..+..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~ 80 (375)
T 2gfp_A 7 LLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHHHHH
Confidence 333333333444555677777888887643 477888999999999999999999999887 566666666665
Q ss_pred HHHh-ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCC
Q 008778 417 LMAV-ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGG 495 (554)
Q Consensus 417 l~~~-~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~ 495 (554)
+... ++...+++..++.|++.+...+...+++.|.+|+++++++.++......+|..+ +|.+.+.+.+..+
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~------- 152 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL-APLIGGLLDTMWN------- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH-HHHHHHHSSCHHH-------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcc-------
Confidence 5544 344466777888999999888899999999999999999999999999999998 8999999888765
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHhHHh
Q 008778 496 NTCVGAHCYRLVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 496 ~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
|+..|++.++..++..+...+..++
T Consensus 153 --------~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 153 --------WRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp --------HHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 9999998887776665544443333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-11 Score=126.46 Aligned_cols=171 Identities=16% Similarity=0.144 Sum_probs=129.7
Q ss_pred hhHHHHHHHHHhhhcchhhhhccHHHHHh-HhC------CCcc--hhhHHHHHHHHhHhhHHhhcchhhH-hhhcCCCch
Q 008778 332 VDFWILFVSFLCGVGTGLAVMNNMGQIGL-ALG------YVDV--SIFVSLTSIWGFFGRIISGSVSEYF-IKRAGTPRP 401 (554)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g------~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~-g~r~~~~~~ 401 (554)
+.+|.+.+..++.....+....+++.+.+ ++| .++. +...+.+.++..++.+..|+++||+ |||+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~--- 88 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI--- 88 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH---
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH---
Confidence 34555555555555555556667777765 467 7654 4477888999999999999999999 998765
Q ss_pred hHHHHHHHHHHHHHHHHHhcc--CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHH---HHhhhhhhHHHhh
Q 008778 402 IWNAASQILMAVGYILMAVAL--PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNI---LILNLPLGSFLFS 476 (554)
Q Consensus 402 ~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~~g~~l~~ 476 (554)
..+.++.+++.++....+ ...+++..++.|++.+...+...+++.|.+|+++++++.+. .....++|..+ +
T Consensus 89 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-g 164 (524)
T 2xut_A 89 ---LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF-A 164 (524)
T ss_dssp ---HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH-H
T ss_pred ---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH-H
Confidence 556666666666655433 34566778889999999889999999999999999776666 88889999998 8
Q ss_pred hhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 008778 477 GLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDIL 524 (554)
Q Consensus 477 p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~ 524 (554)
|.+.+.+.+..+ |+..|++.+++.+++.+..++
T Consensus 165 ~~~~~~l~~~~g---------------~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 165 SLSMPLLLKNFG---------------AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHTSTHHHHTSC---------------HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcccc---------------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999988765 999999988877766555433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.9e-09 Score=106.44 Aligned_cols=136 Identities=9% Similarity=0.015 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhh
Q 008778 49 LELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNT 127 (554)
Q Consensus 49 ~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~ 127 (554)
.+.+++.....+..+ ..++.|++.||+|||+++..+..+.+++.++.++. ++.+.+++..++.+++.+...+
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~ 331 (417)
T 2cfq_A 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------TSALEVVILKTLHMFEVPFLLV 331 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------CSHHHHHHHTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHH
Confidence 344554444444443 47899999999999999998888887776665443 5677777777788887776666
Q ss_pred hHHHHHHhhccC-CCccchHhh-HhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHh
Q 008778 128 AVLVTCIRNFRR-NRGPVSGIL-KGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF 191 (554)
Q Consensus 128 ~~~~~i~~~fp~-~rg~a~gi~-~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (554)
....++.|.+|+ .||++.|+. ..+.++|..+++.+.+.+.+..+++..+....+..++..+..+
T Consensus 332 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 397 (417)
T 2cfq_A 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 777889999986 599999984 7777899888888888777655666666665555555544433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.8e-07 Score=93.60 Aligned_cols=165 Identities=12% Similarity=0.100 Sum_probs=103.6
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
+....+.|.+.++.+.+..+....+....+... ..++++.+.||+|||+.++.+.....++.+..+....... ++..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~ 371 (491)
T 4gc0_A 294 NVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA--PGIV 371 (491)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHH
T ss_pred hHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc--chHH
Confidence 455667788889999888877765555444444 4889999999999999999999988888877665533321 2222
Q ss_pred HH-HHHHHHHhchhhHhhhhHHHHHHhhccCC-CccchHhhHhhhhhhHHHHHHHHHhhcCCC------hH-HHHHHHHH
Q 008778 110 QM-CVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGLSTAIFTDLCSALFADD------PA-KFLFMLAI 180 (554)
Q Consensus 110 ~l-~~~r~l~Gig~g~~~~~~~~~i~~~fp~~-rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~------~~-~~~~~~~~ 180 (554)
.+ .+.-+..+.+.+. .+....+.+|.||.+ |++++|+......+++.+.+.+...+.+.. .+ ..++++++
T Consensus 372 ~~~~~~~~~~~~~~~~-~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~ 450 (491)
T 4gc0_A 372 ALLSMLFYVAAFAMSW-GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGC 450 (491)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHH-HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 22 2222222222222 245667889999964 999999998888888877665544433221 11 22333444
Q ss_pred HHHHHHHHHHhhccccCC
Q 008778 181 VPFVVCLGAIFFLRETTP 198 (554)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~ 198 (554)
+..+..+...+++||...
T Consensus 451 ~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 451 MGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHheecCCCC
Confidence 444444444456666543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 554 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.94 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.38 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.94 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.1e-35 Score=297.38 Aligned_cols=406 Identities=15% Similarity=0.051 Sum_probs=277.5
Q ss_pred ccchhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHH
Q 008778 10 SAGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLE 87 (554)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l 87 (554)
++.||.++..+++..+..... ..++...|.++ |+|+|.+|.+++.+.+.++..+ ++++|+++||+|||+++..+.++
T Consensus 20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 98 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 98 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 345788777666655544433 67788888765 6899999999988888888765 89999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhh
Q 008778 88 GLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSAL 166 (554)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l 166 (554)
.+++.++++++.... ++++.+++.|++.|++.+..++....++.+++|+ +|++++|+...+.++|..+++.+....
T Consensus 99 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 175 (447)
T d1pw4a_ 99 AAAVMLFMGFVPWAT---SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175 (447)
T ss_dssp HHHHHHHHHHCHHHH---SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhhccccchhh---hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence 999999887652110 4688899999999999999999999999999975 599999999999999988877766655
Q ss_pred cC-CChHHHHHHHHHHHH-HHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHH
Q 008778 167 FA-DDPAKFLFMLAIVPF-VVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFS 244 (554)
Q Consensus 167 ~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (554)
.. ..+|++.+++..+.. +..++..++.+++|++...
T Consensus 176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 213 (447)
T d1pw4a_ 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL------------------------------------------ 213 (447)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCC------------------------------------------
T ss_pred hhhhhcccccchhhhhhHHHHHHHHHHhcccchhhccc------------------------------------------
Confidence 44 234555544444333 3333333333333322111
Q ss_pred HHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCch
Q 008778 245 GILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHT 324 (554)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (554)
.+.++ . +++.+ ++.++ +.++....+...
T Consensus 214 -----------------------~~~~~-~------~~~~~-------------~~~~~---------~~~~~~~~~~~~ 241 (447)
T d1pw4a_ 214 -----------------------PPIEE-Y------KNDYP-------------DDYNE---------KAEQELTAKQIF 241 (447)
T ss_dssp -----------------------CSCTT-T------CCC-----------------------------------CCTHHH
T ss_pred -----------------------chhhh-h------hhhcc-------------cchhh---------ccccccchhhHH
Confidence 00000 0 00000 00000 000011112234
Q ss_pred HHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCch
Q 008778 325 IFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRP 401 (554)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~ 401 (554)
.++.++++.+|......++.....+....+.+.+.++ .+++.. ........+...+++++.|++.||+++++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--- 318 (447)
T d1pw4a_ 242 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG--- 318 (447)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH---
T ss_pred HHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccc---
Confidence 5678889999988887777766666777778888765 566643 3467788889999999999999999876532
Q ss_pred hHHHHHHHHHHHHHHHHHhc---cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhh
Q 008778 402 IWNAASQILMAVGYILMAVA---LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGL 478 (554)
Q Consensus 402 ~~~~~~~~l~~~~~~l~~~~---~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~ 478 (554)
........+..++....... +.....+..++.|++.+...+.......|.+|++.+|++.|+.+...++++.+.+|.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~ 398 (447)
T d1pw4a_ 319 ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398 (447)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222222222222211 122445566677777777777888899999999999999999999888865544899
Q ss_pred HHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 008778 479 LAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKN 531 (554)
Q Consensus 479 i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~~ 531 (554)
+.|.+.|..| |+..|++++++.+++.++...+..++++
T Consensus 399 ~~g~~~~~~g---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (447)
T d1pw4a_ 399 IVGYTVDFFG---------------WDGGFMVMIGGSILAVILLIVVMIGEKR 436 (447)
T ss_dssp HHHHHHHSSC---------------SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC---------------hHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999987 7889998888888877776666544433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=3e-25 Score=222.55 Aligned_cols=383 Identities=11% Similarity=0.075 Sum_probs=238.8
Q ss_pred cchhHHHHHHHHHHHhhccchhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHH
Q 008778 11 AGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGL 89 (554)
Q Consensus 11 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~ 89 (554)
++.|...+..++..+..+. ..+.+...+++++|+|.+|++++.+...++..+ +++.|+++||+|||++++++..+..
T Consensus 7 ~~~~~l~~~~f~~~~~~~~--~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~ 84 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGA--YFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH--HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 3445554444333332222 223333347788999999999988777777765 9999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCchHHH----HHHHHHHHhchhhHhhhhHHHHHHhhcc---CCCccchHhhHhhhhhhHHHHHHH
Q 008778 90 VGYGAQWLVVSRKIQPLSYWQ----MCVFLCMGGNSTTWMNTAVLVTCIRNFR---RNRGPVSGILKGYVGLSTAIFTDL 162 (554)
Q Consensus 90 ~~~~~~~~a~~~~~~~~s~~~----l~~~r~l~Gig~g~~~~~~~~~i~~~fp---~~rg~a~gi~~~~~~lg~~i~~~l 162 (554)
++..+..+. .+... .++.+++.+.+.+...........+..+ +++....+......+.+..+++.+
T Consensus 85 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (417)
T d1pv7a_ 85 VMFAPFFIF-------IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASI 157 (417)
T ss_dssp HTHHHHHHH-------THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-------hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccc
Confidence 888887776 33332 3455666666666666555555544443 246777777777777777666666
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhH
Q 008778 163 CSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALI 242 (554)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
.+.+....+++..........+..++..+..++.+.....
T Consensus 158 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 197 (417)
T d1pv7a_ 158 VGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATV---------------------------------------- 197 (417)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCS----------------------------------------
T ss_pred ccccccccccccccchhhHHHHHHHHHHHHhcccccchhh----------------------------------------
Confidence 6655554555554444444444443333322222111100
Q ss_pred HHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCC
Q 008778 243 FSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGED 322 (554)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (554)
+ + + +++..+....
T Consensus 198 -----------------------------~------~--~------------------------------~~~~~~~~~~ 210 (417)
T d1pv7a_ 198 -----------------------------A------N--A------------------------------VGANHSAFSL 210 (417)
T ss_dssp -----------------------------S------H--H------------------------------HHSCCCCCCH
T ss_pred -----------------------------h------h--h------------------------------hhhhcccccc
Confidence 0 0 0 0000000011
Q ss_pred chHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCC----c--chhhHHHHHHHHhHhhHHhhcchhhHhhhc
Q 008778 323 HTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYV----D--VSIFVSLTSIWGFFGRIISGSVSEYFIKRA 396 (554)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~--~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~ 396 (554)
....+.++++..+......................+......+ . .........++..++....+++.||.++|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~ 290 (417)
T d1pv7a_ 211 KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN 290 (417)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHH
T ss_pred cccccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhccccccc
Confidence 1123333344444333333222222222222222222222111 1 122555667888889999999999999887
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHH-hhhhhhHHH
Q 008778 397 GTPRPIWNAASQILMAVGYILMAVAL-PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILI-LNLPLGSFL 474 (554)
Q Consensus 397 ~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~l 474 (554)
.. ..+..+.+++.+.+...+ .+..++..++.|++.+...+...+++.|.+|+++++++.|+.. ....+|..+
T Consensus 291 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 364 (417)
T d1pv7a_ 291 AL------LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF 364 (417)
T ss_dssp HH------HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHH
T ss_pred ch------hhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 54 555566666665555433 4456677788899999988999999999999999999999865 566789998
Q ss_pred hhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 008778 475 FSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKN 531 (554)
Q Consensus 475 ~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~~ 531 (554)
+|.+.|++.|..| |+.+|++++++.++..++..+..+++++
T Consensus 365 -~~~~~G~l~~~~g---------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 365 -MSVLAGNMYESIG---------------FQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp -HHHHHHHHHHHHC---------------HHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred -HHHHHHHHHHHHC---------------HHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 8999999999987 8999999998888887777776655443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=4.9e-13 Score=134.48 Aligned_cols=152 Identities=18% Similarity=0.097 Sum_probs=119.7
Q ss_pred HHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-----ccCchhHH
Q 008778 356 GQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-----ALPGSLYI 428 (554)
Q Consensus 356 ~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-----~~~~~~~~ 428 (554)
.++.++.|.++. +...+.+.++..++.++.|+++||+|||+.+ ..+.++.+++.++... .+...+++
T Consensus 48 ~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (447)
T d1pw4a_ 48 MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGLILAAAVMLFMGFVPWATSSIAVMFV 121 (447)
T ss_dssp HHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH------HHHHHHHHHHHHHHHHCHHHHSSSSHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH------HHHHHHHHHHHhhccccchhhhhHHHHHH
Confidence 345567788754 4578899999999999999999999999865 5555555555554432 24456777
Q ss_pred HHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHH
Q 008778 429 GSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVF 508 (554)
Q Consensus 429 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f 508 (554)
..++.|++.|...+....++.|.+++++|+.+.|+.+....+|..+ +|.+.+.+.+..+. |+..|
T Consensus 122 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i-~~~~~~~~~~~~~~--------------w~~~~ 186 (447)
T d1pw4a_ 122 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLGMAWFND--------------WHAAL 186 (447)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHTCC--------------STTCT
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhh-hhhhhhhHhhhhhc--------------ccccc
Confidence 8889999999888999999999999999999999999999999998 89888887777653 88888
Q ss_pred HHHHHHHHHHHHHHHHhHHh
Q 008778 509 VIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 509 ~i~~~~~~~~~~~~~~l~~~ 528 (554)
++.+.+.++..++.+...++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 187 YMPAFCAILVALFAFAMMRD 206 (447)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhhhHHHHHHHHHHhccc
Confidence 88887777766665555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=1e-09 Score=107.70 Aligned_cols=143 Identities=11% Similarity=0.072 Sum_probs=108.3
Q ss_pred hhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhh
Q 008778 48 QLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMN 126 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~ 126 (554)
..+.+.......++.. ..++.+++.||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~ 330 (417)
T d1pv7a_ 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------TSALEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-------cccchhhHHHHHHHHHHHHHH
Confidence 3344444444444444 47899999999999999999999999998887776 788999999999999999999
Q ss_pred hhHHHHHHhhccC-CCccchHhhH-hhhhhhHHHHHHHHHhhcCCChHHHHHHHHH-HHHHHHHHHHhhccccC
Q 008778 127 TAVLVTCIRNFRR-NRGPVSGILK-GYVGLSTAIFTDLCSALFADDPAKFLFMLAI-VPFVVCLGAIFFLRETT 197 (554)
Q Consensus 127 ~~~~~~i~~~fp~-~rg~a~gi~~-~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 197 (554)
+....++.|.+|+ +|+++.|+.. ...++|..+++++.+.+.+..+++..+++.. +..+..++..+.++.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999985 5999999864 5567888888888888877666665555444 44444455555555443
|