Citrus Sinensis ID: 008780

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550----
Protein Sequence
MAVEDEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLGKFLK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEEcccccccccccEEEEcccccHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccccEEEEEEEEEcccccccccccccEEEEEEccccccccccccEEEEEEEEEEccccEEccccccccEEEEEccccccccHHHHHcccccccEEEEEEcccccccccccccccccccEEEEEEEEEEEHHHcccccccEEEEEEEcccccccccccccccEEEEEEEEEEEccccEEEEccccccccccEEEEccccccHHHHHHHHHccccccEEEEEEcccccccccccccccccccEEEEEEEEEccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEcccccEEEEEEEccccccccccccEEEEEEEEEEccccEEccccccccccccEEEEEEccccEHHHHHHHHHHcccccEEEEEEccHHcccccccccccccccccccEEEEEEEEEEccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEcccccccEEEEEEccccccHHHHHHHHHcccccEEEEEEccccccccccccccccccEEEEEEEEEEccccccccccccEEEEEEEcccccccccccccccEEEEEEEEEEccccccEEEcccccccccEEEEEEccccccHHHHHHHHHcccccEEEEEEccHccccccccccccccccEEEEEEEEEEccccccccEEcccccHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mavededinpqkkkapseddkrrmkivpgslmkavmrpgggdstpsdgdqvayhctvrtldgvivestrseyggkgipirhvLGKSKILLGLlegiptmlkgevsmfkmkpqmhygeddcpvaapstfpkdeelhFEIEMIDFAKAKIIADDFGVVKKVINegqgwetprapyeVKAWISaktgdgklilshregepyfftfgksevpkglemgigtmtREEKAVIYVTsqyltpsplmpvvegceEVHFEVELVHLIQVRDMLGDGRLIKRRIrdgkgefpmdcplhdsllcvhykgmllneeKKVFYdtrvdndgqplefssgeglvpeGFEMCVRLMLpgeialvtcppdyaydkflrpanvpegaHIQWEIELlgfekpkdwtglsfdgIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDfnhvnpqddeegkvfvgkrNLLHLNVAACLLKLGECRKSIEACNKVLdanpahvkgLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLGKFLK
Flexible Loop (DISEMBL)
mavededinpqkkkapseddkrrmkIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVrtldgvivestrseyggkgipirhvLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVInegqgwetprapYEVKAWISAKTGDGKLILSHREGEPYfftfgksevpkGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIqvrdmlgdgrLIKRRIRdgkgefpmdcPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTgnrlfkegkFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKvldanpahvkGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALsklkkqrqvklkvrlenslkgcltrslgkflk
Low Complexity Region (SEG)
MAVEDEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRpgggdstpsdgdQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCeevhfevelvhlIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSklkkqrqvklkvrlENSLKGCLTRSLGKFLK
Disordered region (IsUnstruct)
**************************************************VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE********************************************************
Disordered Region (DISOPRED)
****************************GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCP****STFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT********EGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQ*DEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL******************CLTRSLGKFL*
Disordered Region (DISEMBL)
**********************RMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLGKFLK
Disordered Region (DISPRO)
*********************RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVEDEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLGKFLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	554	2.2.26 [Sep-21-2011]
Q7DMA9	635	Peptidyl-prolyl cis-trans	yes	no	0.992	0.866	0.749	0.0
Q38931	551	Peptidyl-prolyl cis-trans	no	no	0.850	0.854	0.298	2e-54
Q9FJL3	578	Peptidyl-prolyl cis-trans	no	no	0.880	0.844	0.298	3e-53
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.814	0.806	0.313	7e-53
Q95L05	457	Peptidyl-prolyl cis-trans	N/A	no	0.624	0.757	0.295	1e-30
Q9XSI2	457	Peptidyl-prolyl cis-trans	N/A	no	0.624	0.757	0.295	2e-30
Q9XSH5	457	Peptidyl-prolyl cis-trans	N/A	no	0.624	0.757	0.295	3e-30
Q9XT11	457	Peptidyl-prolyl cis-trans	N/A	no	0.624	0.757	0.292	3e-30
Q13451	457	Peptidyl-prolyl cis-trans	yes	no	0.624	0.757	0.289	1e-29
Q5RF88	457	Peptidyl-prolyl cis-trans	yes	no	0.624	0.757	0.286	2e-29

>sp|Q7DMA9|PAS1_ARATH Peptidyl-prolyl cis-trans isomerase PASTICCINO1 OS=Arabidopsis thaliana GN=PAS1 PE=1 SV=2

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/555 (74%), Positives = 479/555 (86%), Gaps = 5/555 (0%)

Query: 1   MAVEDE---DINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTV 57
           MAV D+   +  P+KKK+ +EDDKRR KIVPGSL+KAV+RPGGGDS+P DGDQV YHCTV
Sbjct: 1   MAVGDQTEQNYLPKKKKSETEDDKRRKKIVPGSLLKAVVRPGGGDSSPVDGDQVIYHCTV 60

Query: 58  RTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGE 117
           RTLDGV+VESTRSE GG+G+PIR VLG SK++LGLLEGIPTM KGE++MFKMKP+MHY E
Sbjct: 61  RTLDGVVVESTRSESGGRGVPIRDVLGNSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAE 120

Query: 118 DDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKA 177
            DCPV+AP  FPKD+ELHFEIE++DF+KAKI +DD GV+KK++NEG+GWE+PR PYEVKA
Sbjct: 121 IDCPVSAPENFPKDDELHFEIELLDFSKAKIASDDLGVIKKILNEGEGWESPREPYEVKA 180

Query: 178 WISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSP 237
            ISAK+GDG +I SH E EPYFFTFGKSEVPKGLE+GIGTM R+EKAVIYV  QYLT SP
Sbjct: 181 RISAKSGDGHVIFSHTE-EPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRKQYLTESP 239

Query: 238 LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYK 297
           L+ + +  EEVHFEVELVH IQVRDMLGDGRLIKRRIRDG+GEFPMDCPL DS L VHYK
Sbjct: 240 LLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYK 299

Query: 298 GMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYD 357
           GMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEGFEMC RLMLPGEIALVTCPPDYAYD
Sbjct: 300 GMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYD 359

Query: 358 KFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELA 417
           KF RP  V EGAH+QWEIELLGFE P+DWTGL+F  IMDEA+KIR TGNRLFKEGKFELA
Sbjct: 360 KFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQSIMDEADKIRSTGNRLFKEGKFELA 419

Query: 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477
           KAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLNVAACLLK+GE RKSIE CNKVL+A 
Sbjct: 420 KAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAK 479

Query: 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRL 537
           P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDKSSE DATAAL KLK++ Q + + + 
Sbjct: 480 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKEQ-EAESKA 538

Query: 538 ENSLKGCLTRSLGKF 552
               KG   +  G+ 
Sbjct: 539 RKQFKGLFDKRPGEI 553

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Essential protein regulating cell division, adhesion and elongation throughout the plant development and embryogenesis. Required for the spatial organization of apical meristems. Involved in the hormonal control of cell division and differentiation mediated by cytokinins and auxin. Regulates the function of NAC089 transcription factor by controlling its targeting to the nucleus upon plant cell division. Interacts with enzymes of the fatty acid elongase complex and favors the generation of very-long-chain fatty acids (VLCFAs) required for polar auxin transport and tissue patterning during plant development.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score =  214 bits (544), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 148/496 (29%), Positives = 246/496 (49%), Gaps = 25/496 (5%)

Query: 25  KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLG 84
           K +   L K +++ G G  TP +GD+V  H T   LDG   +S+R     +  P +  LG
Sbjct: 34  KEIQQGLKKKLLKEGEGYETPENGDEVEVHYTGTLLDGTKFDSSRD----RATPFKFTLG 89

Query: 85  KSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144
           + +++ G   GI TM KGE ++F +  ++ YGE      +P T P +  L F++E++ + 
Sbjct: 90  QGQVIKGWDIGIKTMKKGENAVFTIPAELAYGES----GSPPTIPANATLQFDVELLKWD 145

Query: 145 KAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGK 204
             K I  D GV KK++  G+ WE P+   EV     AK  DG ++      E   FT   
Sbjct: 146 SVKDICKDGGVFKKILAVGEKWENPKDLDEVLVKFEAKLEDGTVVGKSDGVE---FTVKD 202

Query: 205 SEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEG------CEEVHFEVELVHLI 258
                 L   + TM + EK ++ V  QY       P   G         +   +ELV   
Sbjct: 203 GHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWK 262

Query: 259 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQ 318
            V ++  D +++K+ +++G G    + P   +++ V   G L  ++  VF       + +
Sbjct: 263 TVSEVTDDNKVVKKVLKEGDG---YERPNEGAVVKVKLIGKL--QDGTVFLKKGHGENEE 317

Query: 319 PLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY---DKFLRPANVPEGAHIQWEI 375
           P EF + E  V +G +  V  M  GE+ALVT  P+YA+   +     A VP  + + +E+
Sbjct: 318 PFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEV 377

Query: 376 ELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD 435
           +LL F+K ++   ++ +  ++ A K +  GN  FK GK+ LA  +YEK ++   +     
Sbjct: 378 DLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFS 437

Query: 436 DEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG 495
           +EE K     +   +LN AAC LKL + +++ + C KVL+    +VK LYRR  AYM L 
Sbjct: 438 EEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELS 497

Query: 496 EFEEAQRDFEMMMKVD 511
           + + A+ D +  +++D
Sbjct: 498 DLDLAEFDVKKALEID 513

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score =  210 bits (534), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 153/513 (29%), Positives = 254/513 (49%), Gaps = 25/513 (4%)

Query: 9   NPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVEST 68
           N +   AP       M+I    L K +++      TP +GD+V  H T   LDG   +S+
Sbjct: 26  NDEADSAPYLKIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDGTKFDSS 85

Query: 69  RSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTF 128
           R     +G P +  LG+  ++ G   GI TM KGE ++F + P++ YGE      +P T 
Sbjct: 86  RD----RGTPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGE----TGSPPTI 137

Query: 129 PKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKL 188
           P +  L F++E+I +   K I  D GV KK+I EG+ WE P+   EV     A+  DG +
Sbjct: 138 PPNATLQFDVELIAWRSVKDICGDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGTI 197

Query: 189 ILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE-- 246
           +      E   FT  +      L   + TM R EK ++ V  QY       P  +G +  
Sbjct: 198 VGKSDGVE---FTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPASDGLQAA 254

Query: 247 -----EVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLL 301
                 +  ++ELV    V ++  D ++IK+ +++G+G    + P   +++ +   G L 
Sbjct: 255 IPPNATLQIDLELVSWKTVVEVTDDRKVIKKILKEGEG---YERPNEGAIVKLKLIGKL- 310

Query: 302 NEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY---DK 358
            +   VF     + D +P EF   E  V EG E  V  M  GE+AL+T  P+YA+   + 
Sbjct: 311 QDGTTVFVKKGHEEDEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYAFGSSES 370

Query: 359 FLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAK 418
               A +P  + + +E+EL+ F K K+   ++    ++ A K +  GN LFK GK+  A 
Sbjct: 371 KQELAVIPPNSTVYYEVELVSFIKEKESWDMNTQERIEAAGKKKEEGNVLFKAGKYARAS 430

Query: 419 AKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478
            +YE+ ++   + +  D+EE K     +   +LN AAC LKL + +++ +   KVL+ + 
Sbjct: 431 KRYERGVKYIEYDSTFDEEEKKKSKDLKIACNLNDAACKLKLKDYKEAAKLSTKVLEMDS 490

Query: 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
            +VK +YRR  AY+   + + A+ D +  +++D
Sbjct: 491 RNVKAMYRRAHAYLETADLDLAELDIKKALEID 523

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score =  208 bits (530), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 149/476 (31%), Positives = 243/476 (51%), Gaps = 25/476 (5%)

Query: 44  TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGE 103
           TP  GD+V  H T   LDG   +S+R     +    +  LG+ +++ G  +GI TM KGE
Sbjct: 56  TPEVGDEVEVHYTGTLLDGKKFDSSRD----RDDTFKFKLGQGQVIKGWDQGIKTMKKGE 111

Query: 104 VSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEG 163
            ++F + P++ YGE      +P T P +  L F++E++ +   + IA D G+ KK++ EG
Sbjct: 112 NALFTIPPELAYGES----GSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEG 167

Query: 164 QGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEK 223
             WE P+ P EV     A+  DG  ++S  EG    FT     +   L   + TM + EK
Sbjct: 168 DKWENPKDPDEVFVKYEARLEDG-TVVSKSEG--VEFTVKDGHLCPALAKAVKTMKKGEK 224

Query: 224 AVIYVTSQYLTPSPLMPVV-EG-----CEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDG 277
            ++ V  QY       P   EG        +  ++ELV    V ++  D +++K+ +++ 
Sbjct: 225 VLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEX 284

Query: 278 KGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCV 337
           +G    + P   +++ V   G L  ++  VF     D + +P EF + E  V EG +  V
Sbjct: 285 EG---YERPNEGAVVTVKITGKL--QDGTVFLKKGHD-EQEPFEFKTDEEAVIEGLDRAV 338

Query: 338 RLMLPGEIALVTCPPDYAY--DKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIM 395
             M  GE+ALVT PP+YAY   +  + A VP  + + +E+EL+ F K K+   L+    +
Sbjct: 339 LNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKDKESWDLNNSEKI 398

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           + A   +  GN LFK GK+  A  +YEK  +   +     ++E K     +   +LN AA
Sbjct: 399 EAAGTKKEEGNALFKSGKYARASKRYEKAAKFIEYDTSFSEDEKKQSKQLKITCNLNNAA 458

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
           C LKL + +++ + C KVL+ +  +VK LYRR  AY  L + E A+ D +  +++D
Sbjct: 459 CKLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYTQLADLELAEVDIKKALEID 514

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q95L05|FKBP5_CHLAE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Chlorocebus aethiops GN=FKBP5 PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 178/366 (48%), Gaps = 20/366 (5%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGK-LILSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V      K  +GK    SH   EP+ F+ GKS+V K 
Sbjct: 30  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFNSSHDRNEPFVFSLGKSQVIKA 89

Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRL 269
            ++G+ TM + E   +    +Y   S   +P +     + FE+EL+   +  D+L DG +
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGSAGSVPKIPSNATLFFEIELLDF-KGEDLLEDGGI 148

Query: 270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL- 328
           I+R  R G+G      P   + + +H +G      +++F       D + + F+ GEG  
Sbjct: 149 IRRTKRKGEG---YSNPNEGATVEIHLEGRC---GERMF-------DCRDVAFTVGEGED 195

Query: 329 --VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
             +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct: 196 HDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query: 386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
              +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMRAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct: 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 506 MMMKVD 511
            +++V+
Sbjct: 376 KVLEVN 381

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP. Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Chlorocebus aethiops (taxid: 9534)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSI2|FKBP5_SAGOE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2

 Score =  134 bits (337), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 178/366 (48%), Gaps = 20/366 (5%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V    + K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNGKKFDSSHDRNEPFVFSIGKGQVIKA 89

Query: 211 LEMGIGTMTREEKAVIYVTSQY-LTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRL 269
            ++G+ TM + E   +    +Y    +  +P +     + FEVEL++  +  D+L DG +
Sbjct: 90  WDIGVSTMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLNF-KGEDLLEDGGI 148

Query: 270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL- 328
           I+R  R G+G      P   + + +H +G       +VF       D + + F+ GEG  
Sbjct: 149 IRRTKRRGEG---YSNPNEGARVQIHLEGRCGG---RVF-------DCRDVAFTVGEGED 195

Query: 329 --VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
             +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct: 196 HDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query: 386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
              +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct: 256 SWEMDTKEKLEQAAIVKEEGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct: 316 LLAAFLNLAMCYLKLREYAKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 506 MMMKVD 511
            +++V+
Sbjct: 376 KVLEVN 381

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saguinus oedipus (taxid: 9490)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSH5|FKBP5_SAIBB Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saimiri boliviensis boliviensis GN=FKBP5 PE=1 SV=1

 Score =  133 bits (335), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 176/366 (48%), Gaps = 20/366 (5%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP     V    + K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 89

Query: 211 LEMGIGTMTREEKAVIYVTSQY-LTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRL 269
            ++G+ TM + E   +    +Y    +  +P +     + FEVEL+   +  D+L DG +
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF-KGEDLLEDGGI 148

Query: 270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL- 328
           I+R  R G+G      P   + + +H +G       +VF       D + + F+ GEG  
Sbjct: 149 IRRTKRRGEG---YSNPNEGARVQIHLEGRCGG---RVF-------DCRDVAFTVGEGED 195

Query: 329 --VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
             +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct: 196 HDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query: 386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
              +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct: 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 506 MMMKVD 511
            +++V+
Sbjct: 376 KVLEVN 381

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saimiri boliviensis boliviensis (taxid: 39432)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XT11|FKBP5_AOTNA Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Aotus nancymaae GN=FKBP5 PE=2 SV=2

 Score =  133 bits (335), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 177/366 (48%), Gaps = 20/366 (5%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V    + K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNGKKFDSSHDRNEPFVFSIGKGQVIKA 89

Query: 211 LEMGIGTMTREEKAVIYVTSQY-LTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRL 269
            ++G+ TM + E   +    +Y    +  +P +     + FE+EL+   +  D+L DG +
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEIELLDF-KGEDLLEDGGI 148

Query: 270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL- 328
           I+R  R G+G      P   + + +H +G       +VF       D + + F+ GEG  
Sbjct: 149 IRRTKRRGEG---YSNPNEGARVQIHLEGRCGG---RVF-------DCRDVAFTVGEGED 195

Query: 329 --VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
             +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct: 196 HDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query: 386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
              +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTLYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct: 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 506 MMMKVD 511
            +++V+
Sbjct: 376 KVLEVN 381

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Aotus nancymaae (taxid: 37293)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q13451|FKBP5_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Homo sapiens GN=FKBP5 PE=1 SV=2

 Score =  131 bits (330), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 173/366 (47%), Gaps = 20/366 (5%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V      K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 89

Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRL 269
            ++G+ TM + E   +    +Y   S   +P +     + FE+EL+   +  D+  DG +
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF-KGEDLFEDGGI 148

Query: 270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL- 328
           I+R  R G+G      P   + + +H +G          +D R       + F+ GEG  
Sbjct: 149 IRRTKRKGEG---YSNPNEGATVEIHLEGRCGGR----MFDCR------DVAFTVGEGED 195

Query: 329 --VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
             +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct: 196 HDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query: 386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
              +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct: 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 506 MMMKVD 511
            +++V+
Sbjct: 376 KVLEVN 381

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5RF88|FKBP5_PONAB Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Pongo abelii GN=FKBP5 PE=2 SV=1

 Score =  130 bits (328), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 173/366 (47%), Gaps = 20/366 (5%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V      K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 89

Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRL 269
            ++G+ TM + E   +    +Y   S   +P +     + FE+EL+   +  D+  DG +
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF-KGEDLFEDGGI 148

Query: 270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG-- 327
           I+R  R G+G      P   + + +H +G          +D R       + F+ GEG  
Sbjct: 149 IRRTKRKGEG---YSNPNEGATVEIHLEGRCGGR----MFDCR------DVAFTVGEGED 195

Query: 328 -LVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
            ++P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct: 196 HVIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query: 386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
              +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                LN+A C  KL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct: 316 LLAAFLNLAMCYSKLREYTKAVECCDKALGLDSANGKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 506 MMMKVD 511
            +++V+
Sbjct: 376 KVLEVN 381

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Pongo abelii (taxid: 9601)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	554
356504332	635	PREDICTED: peptidyl-prolyl isomerase PAS	0.972	0.848	0.819	0.0
225440540	620	PREDICTED: peptidyl-prolyl isomerase PAS	0.972	0.869	0.806	0.0
255574548	618	fk506 binding protein, putative [Ricinus	0.985	0.883	0.795	0.0
224138922	621	predicted protein [Populus trichocarpa]	0.990	0.884	0.793	0.0
312282321	635	unnamed protein product [Thellungiella h	0.954	0.833	0.781	0.0
3080740	634	pasticcino 1-D [Arabidopsis thaliana]	0.992	0.867	0.751	0.0
449460353	589	PREDICTED: peptidyl-prolyl cis-trans iso	0.933	0.877	0.802	0.0
18409970	635	peptidyl-prolyl isomerase PASTICCINO1 [A	0.992	0.866	0.749	0.0
7630021	634	pasticcino 1 [Arabidopsis thaliana]	0.990	0.865	0.747	0.0
357112059	629	PREDICTED: peptidyl-prolyl isomerase PAS	0.976	0.860	0.717	0.0

>gi|356504332|ref|XP_003520950.1| PREDICTED: peptidyl-prolyl isomerase PASTICCINO1-like [Glycine max]

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/542 (81%), Positives = 484/542 (89%), Gaps = 3/542 (0%)

Query: 12  KKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSE 71
           KKK PSED+KR+ KIVPGSLMKA+MRPGGGD+ PSDGDQ+ YHCT+RTLDGV+VESTRS+
Sbjct: 14  KKKPPSEDEKRKKKIVPGSLMKALMRPGGGDAGPSDGDQIIYHCTIRTLDGVLVESTRSD 73

Query: 72  YGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKD 131
           YGGKGIPIRHVLGKSK+LLGLLEGIP+MLKGEV+MFKMKPQ+HYGEDDCPV+AP  FPKD
Sbjct: 74  YGGKGIPIRHVLGKSKMLLGLLEGIPSMLKGEVAMFKMKPQLHYGEDDCPVSAPDGFPKD 133

Query: 132 EELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILS 191
           +ELHFEIE+I+F KAK++ DD GVVKKV  EGQGWE+PR PYEVKA ISAKT  GKLI+S
Sbjct: 134 DELHFEIELIEFFKAKVVTDDLGVVKKVECEGQGWESPREPYEVKALISAKTVTGKLIMS 193

Query: 192 HREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFE 251
           H EGEPYFFTFGKSEVPKGLEM IGTM REEKAVIYVTSQYLT SPLMPV+EG +EVHFE
Sbjct: 194 HMEGEPYFFTFGKSEVPKGLEMAIGTMVREEKAVIYVTSQYLTESPLMPVIEGYDEVHFE 253

Query: 252 VELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDT 311
           VELVH IQVRDMLGDGRLIKRRIRDGKG+FPMDCPLHDSLL VHYKG +LNEEK+VFYDT
Sbjct: 254 VELVHFIQVRDMLGDGRLIKRRIRDGKGDFPMDCPLHDSLLRVHYKGTVLNEEKRVFYDT 313

Query: 312 RVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHI 371
           RVDND QPLEF SGEGLVPEGFEM VRLMLPGEIALVTCPPDYAYDKF RP NVPEGAHI
Sbjct: 314 RVDNDSQPLEFCSGEGLVPEGFEMSVRLMLPGEIALVTCPPDYAYDKFPRPLNVPEGAHI 373

Query: 372 QWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV 431
           QWEIELLGFE PKDWTGL F  IM+EAE IR TGNRLFKEGK+ELAKAKYEKVLR+FNHV
Sbjct: 374 QWEIELLGFETPKDWTGLDFKSIMNEAENIRNTGNRLFKEGKYELAKAKYEKVLREFNHV 433

Query: 432 NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491
           NPQDDEEGKVF   RNLLHLNVAAC LKLGEC+KSIE CNKVL+ANPAHVKGLYRRGMAY
Sbjct: 434 NPQDDEEGKVFADTRNLLHLNVAACHLKLGECKKSIETCNKVLEANPAHVKGLYRRGMAY 493

Query: 492 MALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKGCLTRSLG 550
           MA G+FEEA+ DF++MMKVDKS+E DATAAL KLK++ Q V+ K R     KG   +  G
Sbjct: 494 MAAGDFEEARADFKVMMKVDKSTESDATAALQKLKQKEQDVEKKAR--KQFKGLFDKKPG 551

Query: 551 KF 552
           + 
Sbjct: 552 EI 553

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440540|ref|XP_002273173.1| PREDICTED: peptidyl-prolyl isomerase PASTICCINO1 [Vitis vinifera] gi|297740281|emb|CBI30463.3| unnamed protein product [Vitis vinifera]

 Score =  909 bits (2348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/542 (80%), Positives = 485/542 (89%), Gaps = 3/542 (0%)

Query: 10  PQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTR 69
           PQKKK  SE +KR+ KIVPGSLMKAV+RPGGGDSTPSDGDQV YHCTVRTLDGV+VESTR
Sbjct: 13  PQKKKPLSEAEKRKKKIVPGSLMKAVIRPGGGDSTPSDGDQVIYHCTVRTLDGVVVESTR 72

Query: 70  SEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFP 129
           SE GGKG PIRHVLGKSK++LGLLEG+PTMLKGEV+M KMK ++HYGE +CP+  P  FP
Sbjct: 73  SECGGKGTPIRHVLGKSKMILGLLEGMPTMLKGEVAMLKMKAELHYGEANCPLMVPDNFP 132

Query: 130 KDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI 189
           KD+ELHFEIEM+DF K K+I+DD GV+KKVINEGQGWE+PR PYEVKAWISAKTG+GK I
Sbjct: 133 KDDELHFEIEMLDFFKVKVISDDLGVLKKVINEGQGWESPREPYEVKAWISAKTGEGKEI 192

Query: 190 LSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVH 249
           LSH +GEPYFFTFGKSEVPKGLEMG GTMTR EKAV+YVT+QY+T SPLMP++EG EEV 
Sbjct: 193 LSHTKGEPYFFTFGKSEVPKGLEMGTGTMTRGEKAVLYVTNQYITQSPLMPIIEGVEEVL 252

Query: 250 FEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFY 309
           FEVELVH IQVRDMLGDGRLIKRRI DG+G+FPMDCPLHDSLL VHYKGMLLNEEK VFY
Sbjct: 253 FEVELVHFIQVRDMLGDGRLIKRRIHDGRGDFPMDCPLHDSLLRVHYKGMLLNEEKTVFY 312

Query: 310 DTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGA 369
           +TRVDN+GQPLEF SGEGLVPEG EMCVRLMLPGEIALVTCPPDYAYDKF RPANVPEGA
Sbjct: 313 NTRVDNNGQPLEFGSGEGLVPEGLEMCVRLMLPGEIALVTCPPDYAYDKFPRPANVPEGA 372

Query: 370 HIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 429
           H+QWEIELLGFE PKDWTGL+F+ IMDEA+KIR TGNRLFKEGKFELAKAKYEKVLR+FN
Sbjct: 373 HVQWEIELLGFEMPKDWTGLNFEAIMDEADKIRGTGNRLFKEGKFELAKAKYEKVLREFN 432

Query: 430 HVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 489
           HVNPQDDEEGKVF+  RN LHLNVAAC LK+GECRKSIEACNKVLDA+PAHVK LYRRGM
Sbjct: 433 HVNPQDDEEGKVFLNARNSLHLNVAACYLKMGECRKSIEACNKVLDASPAHVKALYRRGM 492

Query: 490 AYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK-KQRQVKLKVRLENSLKGCLTRS 548
           AYM+ G+FEEA+ DF+MMM +DKS EPDATAAL KLK K+++V+ K R  +  KG   + 
Sbjct: 493 AYMSAGDFEEARNDFKMMMSIDKSCEPDATAALVKLKQKEQEVERKAR--SQFKGLFDKK 550

Query: 549 LG 550
            G
Sbjct: 551 PG 552

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574548|ref|XP_002528185.1| fk506 binding protein, putative [Ricinus communis] gi|223532397|gb|EEF34192.1| fk506 binding protein, putative [Ricinus communis]

 Score =  887 bits (2292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/549 (79%), Positives = 487/549 (88%), Gaps = 3/549 (0%)

Query: 5   DEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVI 64
           +ED  P+KKK P+E DKRR KIVPGSLMKA MRPGGGD+ PSD DQV YHCTVRTLDGV+
Sbjct: 4   NEDFAPKKKKEPTESDKRRKKIVPGSLMKAEMRPGGGDAKPSDDDQVIYHCTVRTLDGVV 63

Query: 65  VESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124
           V+S++ EYGGKG PIR VLGKSK+LLGLLEG+ TMLKGEV+MFKMKP++HYGED CPV+ 
Sbjct: 64  VQSSKLEYGGKGTPIRQVLGKSKMLLGLLEGLTTMLKGEVAMFKMKPEVHYGEDGCPVSP 123

Query: 125 PSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTG 184
           PS+FPK++ELHFEIEM++F+K K++++D G++K+VINEGQGWE+PR PYEVKA ISAKTG
Sbjct: 124 PSSFPKEDELHFEIEMMNFSKVKVVSEDLGIIKQVINEGQGWESPREPYEVKARISAKTG 183

Query: 185 DGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEG 244
           DGK+ILS  +GEPYFFTFGKSEVPKGLEM IGTMTREEKAVIYVTS+YLT SPLM V EG
Sbjct: 184 DGKVILSCPQGEPYFFTFGKSEVPKGLEMAIGTMTREEKAVIYVTSEYLTESPLMSVAEG 243

Query: 245 CEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEE 304
           C+EVHFEVELVH  QVRDMLGDGRLIKRR+ DG+GEFPMDCPLHDSLL VHYKGMLL+EE
Sbjct: 244 CDEVHFEVELVHFTQVRDMLGDGRLIKRRLCDGRGEFPMDCPLHDSLLRVHYKGMLLDEE 303

Query: 305 KKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPAN 364
            KVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKF RPAN
Sbjct: 304 NKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFQRPAN 363

Query: 365 VPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKV 424
           VPEGAHIQWEIELLGFE PKDWTG+ F  IM EAEKIR TGNRL+KEGKFELAKAKYEKV
Sbjct: 364 VPEGAHIQWEIELLGFEMPKDWTGMDFPTIMGEAEKIRNTGNRLYKEGKFELAKAKYEKV 423

Query: 425 LRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL 484
           LR+FNHVNPQDDEEGKVFV  RNLL+LN+AAC LK+GEC+KSIE CNKVLDANPAH K L
Sbjct: 424 LREFNHVNPQDDEEGKVFVDTRNLLNLNLAACYLKMGECKKSIEYCNKVLDANPAHAKAL 483

Query: 485 YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKG 543
           YRRGMAYM  G+FEEA+RDFEMMMK DKSSE DA AAL KLK+++Q V+ KVR     KG
Sbjct: 484 YRRGMAYMTDGDFEEARRDFEMMMKGDKSSEADAMAALQKLKQKKQEVERKVR--KQFKG 541

Query: 544 CLTRSLGKF 552
              +  G+ 
Sbjct: 542 LFDKKPGEI 550

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138922|ref|XP_002322935.1| predicted protein [Populus trichocarpa] gi|222867565|gb|EEF04696.1| predicted protein [Populus trichocarpa]

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/556 (79%), Positives = 489/556 (87%), Gaps = 7/556 (1%)

Query: 1   MAVED---EDINPQKK-KAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCT 56
           MA ED   ++  PQKK K P+E +KRR KIVPGSLMKA +RPGGGD+ PSDGDQV YHCT
Sbjct: 1   MAAEDGTAQEYVPQKKNKEPTETEKRRKKIVPGSLMKAEIRPGGGDARPSDGDQVIYHCT 60

Query: 57  VRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYG 116
           VRTL GV+VESTRSEYGG+G PIR VLGKSK+LLGLLEG+PTML GEV+MFKMKPQMHY 
Sbjct: 61  VRTLAGVVVESTRSEYGGEGTPIRQVLGKSKMLLGLLEGLPTMLSGEVAMFKMKPQMHYS 120

Query: 117 EDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVK 176
           E DCPV+ PS+FP+D+ELHFEIEMIDF+K  +++DD GV+KKVI+EGQGWE+PR PYEVK
Sbjct: 121 EADCPVSPPSSFPRDDELHFEIEMIDFSK--VVSDDLGVIKKVIDEGQGWESPREPYEVK 178

Query: 177 AWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPS 236
           AWISAKTGD K+ILS ++GEPYFFT GKSEVPKGLEMGIGTMTREEKAVIYVT+QYLT S
Sbjct: 179 AWISAKTGDDKVILSPKQGEPYFFTIGKSEVPKGLEMGIGTMTREEKAVIYVTNQYLTES 238

Query: 237 PLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHY 296
           PLM VV G EEV FEVEL+H  QVRDMLGDGRLIKRR+RDGKGEFPMDCPL DSLL VHY
Sbjct: 239 PLMSVV-GLEEVQFEVELIHFTQVRDMLGDGRLIKRRLRDGKGEFPMDCPLQDSLLRVHY 297

Query: 297 KGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY 356
           KGMLLNEEK V  DTR+DNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE+ALVTCPPDYAY
Sbjct: 298 KGMLLNEEKTVVIDTRIDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEVALVTCPPDYAY 357

Query: 357 DKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFEL 416
           DKF RPANVPEGAHI+WEIELLGFE PKDWTGL F G+MDEAEKIR TGNRLFKEGKFEL
Sbjct: 358 DKFTRPANVPEGAHIEWEIELLGFEMPKDWTGLDFQGVMDEAEKIRTTGNRLFKEGKFEL 417

Query: 417 AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476
           AKAKYEKVLR+FNHVNPQDDEEGKVF+  RNLL+LNVAAC LKLGECRKSIE CNKVL+A
Sbjct: 418 AKAKYEKVLREFNHVNPQDDEEGKVFLNTRNLLNLNVAACHLKLGECRKSIETCNKVLEA 477

Query: 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVR 536
           NPAHVK LYRRGMAYM +G+FEEA+ DFEMM+KVDKSSE DATAAL KLK+++Q  ++ +
Sbjct: 478 NPAHVKALYRRGMAYMEVGDFEEARSDFEMMLKVDKSSELDATAALKKLKQKQQQDVEKK 537

Query: 537 LENSLKGCLTRSLGKF 552
                KG   +  G+ 
Sbjct: 538 ARRQFKGLFDKKPGEI 553

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282321|dbj|BAJ34026.1| unnamed protein product [Thellungiella halophila]

 Score =  872 bits (2252), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/530 (78%), Positives = 468/530 (88%), Gaps = 1/530 (0%)

Query: 1   MAVEDEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL 60
           M   +++  P+KKK+ +ED+KRR KIVPGSL+KAV+RPGGG+S+P DGDQV YHCTVRTL
Sbjct: 1   MDATEQNYLPKKKKSETEDEKRRKKIVPGSLLKAVVRPGGGESSPVDGDQVVYHCTVRTL 60

Query: 61  DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDC 120
           DGV+VESTRSE GG+G+PIR VLGKSK++LGLLEGIPTM KGE++MFKMKP+MHY E DC
Sbjct: 61  DGVVVESTRSECGGRGVPIRDVLGKSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAEKDC 120

Query: 121 PVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWIS 180
           PV+A   FPKD+ELHFEIE++DFAKAKI +DD GVVKK++ EG+GWE+PR PYEVKA IS
Sbjct: 121 PVSAQVNFPKDDELHFEIELLDFAKAKIASDDLGVVKKILIEGEGWESPREPYEVKARIS 180

Query: 181 AKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP 240
           AK+GDG++I SH E EPYFFTFGKSEVPKGLE+GIGTM R+EKAVIYV  QYLT SPLM 
Sbjct: 181 AKSGDGQVIFSHTE-EPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRKQYLTESPLMH 239

Query: 241 VVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGML 300
           +V+  EEVHFEVELVH IQVRDMLGDGRLIKRRIRDG+GEFPMDCPL DS L VHYKGML
Sbjct: 240 IVQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYKGML 299

Query: 301 LNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFL 360
           LNEEK VFYD+R+DN+ QPLEFSSGEGLVPEGFEMC RLMLPGE+ALV+CPPDYAYDKF 
Sbjct: 300 LNEEKTVFYDSRIDNNDQPLEFSSGEGLVPEGFEMCTRLMLPGELALVSCPPDYAYDKFP 359

Query: 361 RPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAK 420
           RP  VPEGAHIQWEIELLGFE P+DWTGL+F  IM+EAE IR TGNRLFKEGKFELAKAK
Sbjct: 360 RPPGVPEGAHIQWEIELLGFETPRDWTGLNFQSIMNEAENIRSTGNRLFKEGKFELAKAK 419

Query: 421 YEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480
           YEKVLR+FNHVNPQDDEEGKVF   RN+LHLNVAACLLK GE RKS+E CNKVL+A P H
Sbjct: 420 YEKVLREFNHVNPQDDEEGKVFGDARNMLHLNVAACLLKTGEWRKSVETCNKVLEAKPGH 479

Query: 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530
           VKGLYRRGMAYMA  E+E+A+ DF MM+KVDKSSE DATAAL KLK++ Q
Sbjct: 480 VKGLYRRGMAYMAGAEYEDARNDFNMMIKVDKSSESDATAALLKLKQKEQ 529

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3080740|gb|AAC39445.1| pasticcino 1-D [Arabidopsis thaliana]

 Score =  871 bits (2251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/555 (75%), Positives = 480/555 (86%), Gaps = 5/555 (0%)

Query: 1   MAVEDE---DINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTV 57
           MAV D+   +  P+KKK+ +EDDKRR KIVPGSL+KAV+RPGGGDS+P DGDQV YHCTV
Sbjct: 1   MAVGDQTEQNYLPKKKKSETEDDKRRKKIVPGSLLKAVVRPGGGDSSPVDGDQVIYHCTV 60

Query: 58  RTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGE 117
           RTLDGV+VESTRSE GG+G+PIR VLGKSK++LGLLEGIPTM KGE++MFKMKP+MHY E
Sbjct: 61  RTLDGVVVESTRSESGGRGVPIRDVLGKSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAE 120

Query: 118 DDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKA 177
            DCPV+AP  FPKD+ELHFEIE++DF+KAKI +DD GV+KK++NEG+GWE+PR PYEVKA
Sbjct: 121 IDCPVSAPENFPKDDELHFEIELLDFSKAKIASDDLGVIKKILNEGEGWESPREPYEVKA 180

Query: 178 WISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSP 237
            ISAK+GDG +I SH E EPYFFTFGKSEVPKGLE+GIGTM R+EKAVIYV  QYLT SP
Sbjct: 181 RISAKSGDGHVIFSHTE-EPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRKQYLTESP 239

Query: 238 LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYK 297
           L+ + +  EEVHFEVELVH IQVRDMLGDGRLIKRRIRDG+GEFPMDCPL DS L VHYK
Sbjct: 240 LLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYK 299

Query: 298 GMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYD 357
           GMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEGFEMC RLMLPGEIALVTCPPDYAYD
Sbjct: 300 GMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYD 359

Query: 358 KFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELA 417
           KF RP  V EGAH+QWEIELLGFE P+DWTGL+F  IMDEA+KIR TGNRLFKEGKFELA
Sbjct: 360 KFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQSIMDEADKIRSTGNRLFKEGKFELA 419

Query: 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477
           KAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLNVAACLLK+GE RKSIE CNKVL+A 
Sbjct: 420 KAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAK 479

Query: 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRL 537
           P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDKSSE DATAAL KLK++ Q + + + 
Sbjct: 480 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKEQ-EAESKA 538

Query: 538 ENSLKGCLTRSLGKF 552
               KG   +  G+ 
Sbjct: 539 RKQFKGLFDKRPGEI 553

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460353|ref|XP_004147910.1| PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1-like [Cucumis sativus] gi|449519521|ref|XP_004166783.1| PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1-like [Cucumis sativus]

 Score =  870 bits (2248), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/521 (80%), Positives = 463/521 (88%), Gaps = 4/521 (0%)

Query: 32  MKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLG 91
           MKAVMRPGGG++TPS+GDQV YHCT+RTLDG +V+STRSE+GGKGIP RHVLGKSK++LG
Sbjct: 1   MKAVMRPGGGEATPSEGDQVVYHCTIRTLDGFVVQSTRSEFGGKGIPTRHVLGKSKMILG 60

Query: 92  LLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIAD 151
           LLEGIPTMLKGEV+MFKMKPQMHYGE+DCPV+  S+FPK +ELHFEIEMIDF KAK++ +
Sbjct: 61  LLEGIPTMLKGEVAMFKMKPQMHYGEEDCPVSVSSSFPKGDELHFEIEMIDFFKAKVVCN 120

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGL 211
           DFGVVKKVI+EGQGWE+PR PYE+KAWISA+TGDGK+ILSH  GEPYFFTFGKSEVPKGL
Sbjct: 121 DFGVVKKVISEGQGWESPREPYEIKAWISARTGDGKVILSHATGEPYFFTFGKSEVPKGL 180

Query: 212 EMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIK 271
           EMGIGTMTR EKAVI+VTSQYLTPSPL+ V +G EEV FEVELVH IQVRDMLGDGRLIK
Sbjct: 181 EMGIGTMTRGEKAVIFVTSQYLTPSPLITVEDGVEEVQFEVELVHFIQVRDMLGDGRLIK 240

Query: 272 RRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPE 331
           RRI DGKG+FPMDCPLHDSLL VHYK ML+ E+KK FYDT+VDNDGQPLEF SGEGLVPE
Sbjct: 241 RRIHDGKGDFPMDCPLHDSLLRVHYKAMLV-EDKKAFYDTKVDNDGQPLEFRSGEGLVPE 299

Query: 332 GFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSF 391
           GFEM VRLMLPGEIALVTCPPDYAYDKF RPANVP GAH+QWEIELLGFE PK+W GL F
Sbjct: 300 GFEMSVRLMLPGEIALVTCPPDYAYDKFPRPANVPAGAHVQWEIELLGFEMPKEWDGLDF 359

Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHL 451
             IMDEAEKIR TGNRLFKEGKFELAKAKYEKVLR+FNHVNPQDDEEGKVF   RN+L+L
Sbjct: 360 KSIMDEAEKIRNTGNRLFKEGKFELAKAKYEKVLREFNHVNPQDDEEGKVFSNTRNMLNL 419

Query: 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
           NVAAC LKLGECRKSIE CNKV++ANPA+ K LYRRGMAYM LG+FEEA+ DFEMM K D
Sbjct: 420 NVAACYLKLGECRKSIETCNKVIEANPANAKALYRRGMAYMTLGDFEEARNDFEMMKKAD 479

Query: 512 KSSEPDATAALSKLK-KQRQVKLKVRLENSLKGCLTRSLGK 551
           KSSE DATAAL KLK K+++V+ K R     KG   +  G+
Sbjct: 480 KSSETDATAALLKLKQKEQEVEKKAR--KQFKGLFDKKPGE 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409970|ref|NP_566993.1| peptidyl-prolyl isomerase PASTICCINO1 [Arabidopsis thaliana] gi|73921623|sp|Q7DMA9.2|PAS1_ARATH RecName: Full=Peptidyl-prolyl cis-trans isomerase PASTICCINO1; AltName: Full=70 kDa peptidyl-prolyl isomerase; AltName: Full=FK506-binding protein 72; Short=AtFKBP72; AltName: Full=Immunophilin FKBP72; AltName: Full=Peptidyl-prolyl cis-trans isomerase FKBP72; Short=PPIase FKBP72; AltName: Full=Rotamase gi|15810453|gb|AAL07114.1| putative pasticcino 1 protein [Arabidopsis thaliana] gi|20465605|gb|AAM20285.1| putative pasticcino 1 protein [Arabidopsis thaliana] gi|332645653|gb|AEE79174.1| peptidyl-prolyl isomerase PASTICCINO1 [Arabidopsis thaliana]

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/555 (74%), Positives = 479/555 (86%), Gaps = 5/555 (0%)

Query: 1   MAVEDE---DINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTV 57
           MAV D+   +  P+KKK+ +EDDKRR KIVPGSL+KAV+RPGGGDS+P DGDQV YHCTV
Sbjct: 1   MAVGDQTEQNYLPKKKKSETEDDKRRKKIVPGSLLKAVVRPGGGDSSPVDGDQVIYHCTV 60

Query: 58  RTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGE 117
           RTLDGV+VESTRSE GG+G+PIR VLG SK++LGLLEGIPTM KGE++MFKMKP+MHY E
Sbjct: 61  RTLDGVVVESTRSESGGRGVPIRDVLGNSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAE 120

Query: 118 DDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKA 177
            DCPV+AP  FPKD+ELHFEIE++DF+KAKI +DD GV+KK++NEG+GWE+PR PYEVKA
Sbjct: 121 IDCPVSAPENFPKDDELHFEIELLDFSKAKIASDDLGVIKKILNEGEGWESPREPYEVKA 180

Query: 178 WISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSP 237
            ISAK+GDG +I SH E EPYFFTFGKSEVPKGLE+GIGTM R+EKAVIYV  QYLT SP
Sbjct: 181 RISAKSGDGHVIFSHTE-EPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRKQYLTESP 239

Query: 238 LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYK 297
           L+ + +  EEVHFEVELVH IQVRDMLGDGRLIKRRIRDG+GEFPMDCPL DS L VHYK
Sbjct: 240 LLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYK 299

Query: 298 GMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYD 357
           GMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEGFEMC RLMLPGEIALVTCPPDYAYD
Sbjct: 300 GMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYD 359

Query: 358 KFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELA 417
           KF RP  V EGAH+QWEIELLGFE P+DWTGL+F  IMDEA+KIR TGNRLFKEGKFELA
Sbjct: 360 KFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQSIMDEADKIRSTGNRLFKEGKFELA 419

Query: 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477
           KAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLNVAACLLK+GE RKSIE CNKVL+A 
Sbjct: 420 KAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAK 479

Query: 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRL 537
           P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDKSSE DATAAL KLK++ Q + + + 
Sbjct: 480 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKEQ-EAESKA 538

Query: 538 ENSLKGCLTRSLGKF 552
               KG   +  G+ 
Sbjct: 539 RKQFKGLFDKRPGEI 553

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7630021|emb|CAB88363.1| pasticcino 1 [Arabidopsis thaliana]

 Score =  864 bits (2232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/555 (74%), Positives = 479/555 (86%), Gaps = 6/555 (1%)

Query: 1   MAVEDE---DINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTV 57
           MAV D+   +  P+KKK+ +EDDKR+ KIVPGSL+KAV+RPGGGDS+P DGDQV YHCTV
Sbjct: 1   MAVGDQTEQNYLPKKKKSETEDDKRK-KIVPGSLLKAVVRPGGGDSSPVDGDQVIYHCTV 59

Query: 58  RTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGE 117
           RTLDGV+VESTRSE GG+G+PIR VLG SK++LGLLEGIPTM KGE++MFKMKP+MHY E
Sbjct: 60  RTLDGVVVESTRSESGGRGVPIRDVLGNSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAE 119

Query: 118 DDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKA 177
            DCPV+AP  FPKD+ELHFEIE++DF+KAKI +DD GV+KK++NEG+GWE+PR PYEVKA
Sbjct: 120 IDCPVSAPENFPKDDELHFEIELLDFSKAKIASDDLGVIKKILNEGEGWESPREPYEVKA 179

Query: 178 WISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSP 237
            ISAK+GDG +I SH E EPYFFTFGKSEVPKGLE+GIGTM R+EKAVIYV  QYLT SP
Sbjct: 180 RISAKSGDGHVIFSHTE-EPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRKQYLTESP 238

Query: 238 LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYK 297
           L+ + +  EEVHFEVELVH IQVRDMLGDGRLIKRRIRDG+GEFPMDCPL DS L VHYK
Sbjct: 239 LLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYK 298

Query: 298 GMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYD 357
           GMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEGFEMC RLMLPGEIALVTCPPDYAYD
Sbjct: 299 GMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYD 358

Query: 358 KFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELA 417
           KF RP  V EGAH+QWEIELLGFE P+DWTGL+F  IMDEA+KIR TGNRLFKEGKFELA
Sbjct: 359 KFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQSIMDEADKIRSTGNRLFKEGKFELA 418

Query: 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477
           KAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLNVAACLLK+GE RKSIE CNKVL+A 
Sbjct: 419 KAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAK 478

Query: 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRL 537
           P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDKSSE DATAAL KLK++ Q + + + 
Sbjct: 479 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKEQ-EAESKA 537

Query: 538 ENSLKGCLTRSLGKF 552
               KG   +  G+ 
Sbjct: 538 RKQFKGLFDKRPGEI 552

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357112059|ref|XP_003557827.1| PREDICTED: peptidyl-prolyl isomerase PASTICCINO1-like [Brachypodium distachyon]

 Score =  821 bits (2121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/545 (71%), Positives = 462/545 (84%), Gaps = 4/545 (0%)

Query: 10  PQKKKAPSED--DKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVES 67
           P+KKK+P+E+  +KRR K+ PGSLMKAV+R G GD TP+DG QV  HCT RT+DG++V S
Sbjct: 13  PEKKKSPAEEAAEKRREKLTPGSLMKAVIRSGSGDLTPADGHQVVLHCTTRTMDGIVVNS 72

Query: 68  TRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPST 127
           TR E+GGKGIP+R VLGKSK++LG  EG PTMLKGE++MFKM+PQ+HY EDDCPV AP+ 
Sbjct: 73  TRREHGGKGIPLRFVLGKSKMILGFAEGFPTMLKGEIAMFKMEPQIHYAEDDCPVTAPNG 132

Query: 128 FPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGK 187
           FPKD EL FEIEM+DF KAK++A+D GVVKK++ EG+GWETPR PYEV A I+A+TGDGK
Sbjct: 133 FPKDAELQFEIEMLDFFKAKVVAEDLGVVKKIVEEGKGWETPREPYEVTARITARTGDGK 192

Query: 188 LILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE 247
            IL H +  PYFFT GKSEVPKGLEMGIGTM R+EKA IYV+  YLT S LMP VEG EE
Sbjct: 193 EIL-HSKEVPYFFTLGKSEVPKGLEMGIGTMVRKEKATIYVSCTYLTESSLMPQVEGLEE 251

Query: 248 VHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKV 307
           VHFEVELV  IQVRDMLGDGRLIKRR+ DG+GEFPMDCPLHDSLL VHYKGMLL+E K V
Sbjct: 252 VHFEVELVQFIQVRDMLGDGRLIKRRVVDGRGEFPMDCPLHDSLLRVHYKGMLLDEPKSV 311

Query: 308 FYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPE 367
           FYDT++DNDG+PLEF SGEGLVPEGFEMCVRLMLPGE ++VTCPPD+AYDKF RPANVPE
Sbjct: 312 FYDTQIDNDGEPLEFCSGEGLVPEGFEMCVRLMLPGEKSVVTCPPDFAYDKFPRPANVPE 371

Query: 368 GAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427
           GAH++WEIELLGFE PKDWTGL+F  IM+EA+KI+ TGNRLFKEGKFELAKAKYEK+LR+
Sbjct: 372 GAHVRWEIELLGFEVPKDWTGLTFKEIMEEADKIKNTGNRLFKEGKFELAKAKYEKLLRE 431

Query: 428 FNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 487
           +NHV+PQDDEEGK+F   R+ LHLNVAAC  K+GE RKSIEACNKV+D+NP HVK LYRR
Sbjct: 432 YNHVHPQDDEEGKIFANSRSSLHLNVAACYQKMGEYRKSIEACNKVVDSNPVHVKALYRR 491

Query: 488 GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTR 547
           GM+YM  G+F++A++DFE M+ VDKSSEPDATAAL KLK++ Q +++ +     KG   +
Sbjct: 492 GMSYMLGGDFDDAKKDFEKMVTVDKSSEPDATAALLKLKQKEQ-EIEKKARKQFKGLFDK 550

Query: 548 SLGKF 552
             G+ 
Sbjct: 551 KPGEI 555

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	554
TAIR|locus:2084435	635	PAS1 "AT3G54010" [Arabidopsis	0.940	0.820	0.740	4.8e-213
UNIPROTKB|Q10KX6	632	Os03g0367000 "Peptidylprolyl i	0.924	0.810	0.710	5.4e-205
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.792	0.750	0.320	5.8e-50
UNIPROTKB|Q6K5Q1	682	P0579G08.8 "Putative peptidylp	0.801	0.651	0.302	7.4e-50
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.895	0.858	0.282	5.2e-49
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.855	0.843	0.278	1.4e-48
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.801	0.765	0.305	4.7e-48
UNIPROTKB|Q95L05	457	FKBP5 "Peptidyl-prolyl cis-tra	0.631	0.765	0.281	2.9e-31
UNIPROTKB|F1NIM4	442	FKBP4 "Uncharacterized protein	0.628	0.787	0.291	3.8e-31
UNIPROTKB|F1NP08	464	FKBP4 "Uncharacterized protein	0.628	0.75	0.291	3.8e-31

TAIR|locus:2084435 PAS1 "AT3G54010" [Arabidopsis thaliana (taxid:3702)]

 Score = 2059 (729.9 bits), Expect = 4.8e-213, P = 4.8e-213
 Identities = 389/525 (74%), Positives = 444/525 (84%)

Query:     1 MAVEDE-DIN--PQKKKAPSEDDKRRMKIVPGSLMKAVMRXXXXXXXXXXXXQVAYHCTV 57
             MAV D+ + N  P+KKK+ +EDDKRR KIVPGSL+KAV+R            QV YHCTV
Sbjct:     1 MAVGDQTEQNYLPKKKKSETEDDKRRKKIVPGSLLKAVVRPGGGDSSPVDGDQVIYHCTV 60

Query:    58 RTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGE 117
             RTLDGV+VESTRSE GG+G+PIR VLG SK++LGLLEGIPTM KGE++MFKMKP+MHY E
Sbjct:    61 RTLDGVVVESTRSESGGRGVPIRDVLGNSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAE 120

Query:   118 DDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKA 177
              DCPV+AP  FPKD+ELHFEIE++DF+KAKI +DD GV+KK++NEG+GWE+PR PYEVKA
Sbjct:   121 IDCPVSAPENFPKDDELHFEIELLDFSKAKIASDDLGVIKKILNEGEGWESPREPYEVKA 180

Query:   178 WISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSP 237
              ISAK+GDG +I SH E EPYFFTFGKSEVPKGLE+GIGTM R+EKAVIYV  QYLT SP
Sbjct:   181 RISAKSGDGHVIFSHTE-EPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRKQYLTESP 239

Query:   238 LMPVVEGCXXXXXXXXXXXXIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYK 297
             L+ + +              IQVRDMLGDGRLIKRRIRDG+GEFPMDCPL DS L VHYK
Sbjct:   240 LLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYK 299

Query:   298 GMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYD 357
             GMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEGFEMC RLMLPGEIALVTCPPDYAYD
Sbjct:   300 GMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYD 359

Query:   358 KFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELA 417
             KF RP  V EGAH+QWEIELLGFE P+DWTGL+F  IMDEA+KIR TGNRLFKEGKFELA
Sbjct:   360 KFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQSIMDEADKIRSTGNRLFKEGKFELA 419

Query:   418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477
             KAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLNVAACLLK+GE RKSIE CNKVL+A 
Sbjct:   420 KAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAK 479

Query:   478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL 522
             P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDKSSE DATAAL
Sbjct:   480 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAAL 524

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006457 "protein folding" evidence=IEA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0042761 "very long-chain fatty acid biosynthetic process" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0009735 "response to cytokinin stimulus" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0030154 "cell differentiation" evidence=IMP

GO:0048364 "root development" evidence=IMP

UNIPROTKB|Q10KX6 Os03g0367000 "Peptidylprolyl isomerase PASTICCINO1, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1983 (703.1 bits), Expect = 5.4e-205, P = 5.4e-205
 Identities = 366/515 (71%), Positives = 429/515 (83%)

Query:    11 QKKKAPSEDD--KRRMKIVPGSLMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVEST 68
             +KKK+P+E++  KRR K+ PGSLMK ++R            QV  HCT RT+DG+IV ST
Sbjct:    17 KKKKSPTEEEAEKRRKKLTPGSLMKGLIRSGGGDATPAEGDQVIVHCTTRTIDGIIVNST 76

Query:    69 RSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTF 128
             R E+GGKG+P+R VLGKSK++LG  EG PTML GE++MFKMKPQ+HY E+DCPV AP  F
Sbjct:    77 RREHGGKGVPLRFVLGKSKMILGFAEGFPTMLMGEIAMFKMKPQIHYAEEDCPVTAPDGF 136

Query:   129 PKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKL 188
             PKD+EL FEIEM+DF KAKI+A+D GVVKK+I+EG+GWETPR PYEV A I+A+TGDGK 
Sbjct:   137 PKDDELQFEIEMLDFFKAKIVAEDLGVVKKIIDEGKGWETPREPYEVTARITARTGDGKE 196

Query:   189 ILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCXXX 248
             +L  +E EPYFFT GKSEVPKGLEMGIG+M REEKA+IYVTS YLT S L+P +EG    
Sbjct:   197 LLPSKE-EPYFFTIGKSEVPKGLEMGIGSMAREEKAIIYVTSAYLTNSSLIPQLEGIEEV 255

Query:   249 XXXXXXXXXIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVF 308
                      +QVRDMLGDGRLIKRR+ DGKGEFPMDCPLHDSLL VHYKGMLL+E K +F
Sbjct:   256 QFEVELVQFVQVRDMLGDGRLIKRRVVDGKGEFPMDCPLHDSLLRVHYKGMLLDEPKSIF 315

Query:   309 YDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEG 368
             YDTRVDN G+PLEF SGEGLVPEGFEMCVRLMLPGE ++VTCPPD+AYDKF RPANVPEG
Sbjct:   316 YDTRVDNHGEPLEFCSGEGLVPEGFEMCVRLMLPGEKSIVTCPPDFAYDKFPRPANVPEG 375

Query:   369 AHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDF 428
             AH+QWEIELLGFE PKDWTG +F  IMD+AEKI+ TGNRLFKEGKFELAKAKYEKVLR++
Sbjct:   376 AHVQWEIELLGFEMPKDWTGFTFQEIMDDAEKIKTTGNRLFKEGKFELAKAKYEKVLREY 435

Query:   429 NHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRG 488
             NHV+PQDD+EGK+F   R+ LHLNVAAC  K+GE RKSI+ CNKVL+ANP HVK LYRRG
Sbjct:   436 NHVHPQDDDEGKIFANSRSSLHLNVAACYQKMGEYRKSIDTCNKVLEANPVHVKALYRRG 495

Query:   489 MAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523
             M+YM LG+F++A++DFE M+ VDKSSEPDATAAL+
Sbjct:   496 MSYMLLGDFDDAKKDFEKMIAVDKSSEPDATAALN 530

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 153/478 (32%), Positives = 236/478 (49%)

Query:    50 QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
             +V  H T   LDG   +S+R     +G P +  LG+ +++ G  EGI TM KGE ++F +
Sbjct:    70 EVQVHYTGTLLDGTKFDSSRD----RGTPFKFSLGQGEVIKGWDEGIKTMKKGEQAVFTV 125

Query:   110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
              P++ YGE      +P   P +  L F++E++ +A  K I  D G+ KKV+ EG  WE P
Sbjct:   126 PPELAYGE----AGSPPAIPPNATLRFDVELLSWASVKDICKDGGIFKKVLAEGHKWENP 181

Query:   170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
             +   EV     A+  DG ++ S  +G  +    G    P  L   + TM + EK ++ V 
Sbjct:   182 KDLDEVLVKYEARLEDGTVV-SKSDGVEFAVKDGYF-CP-ALSKAVKTMKKGEKVLLTVK 238

Query:   230 SQYLTPSPLMPVVEGCXXXXXXXXXXXXIQVRD-----MLGDG-RLIKRRIRDGKG-EFP 282
              QY       P                 +++       ++GD  R++K+ +++G+G E P
Sbjct:   239 PQYGFGEQGKPASGAEAAVPPNATLYVDLELLSWKTVTLIGDDKRILKKVLKEGEGYERP 298

Query:   283 MDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLP 342
              D     +++ V + G L  E+  VF     D D +P EF + E  V EG +  V  M  
Sbjct:   299 ND----GAVVRVRFIGKL--EDGTVFSKKGHDGD-EPFEFRTDEEQVIEGLDRTVVTMKK 351

Query:   343 GEIALVTCPPDYAYDKFLRP---ANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAE 399
             GE+ALV  PP +A+         A VP  + + +E+EL+ FEK K+    S+D + D AE
Sbjct:   352 GEVALVRLPPQHAFGSTETKQDLAVVPANSTVWYEVELVSFEKEKE----SWD-LKDNAE 406

Query:   400 KIRVT------GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNV 453
             KI         GN  FK GK+  A  +YEK  +   + +   D+E K     +    LN 
Sbjct:   407 KIEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDEKKQSKALKVSCKLNN 466

Query:   454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
             AAC LKL E R++ + C KVL+    +VK LYRR  AY+ L + E A+ D +  +++D
Sbjct:   467 AACKLKLKEYREAEKLCTKVLELESTNVKALYRRTQAYIELADLELAELDVKKALEID 524

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 143/473 (30%), Positives = 233/473 (49%)

Query:    50 QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
             +V  H T   LDG   +S+R     +  P +  LG+ +++ G   GI TM KGE ++F +
Sbjct:   115 EVQVHYTGTLLDGTKFDSSRD----RDAPFKFTLGQGQVIKGWDLGIKTMKKGENAIFTI 170

Query:   110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
              P++ YGED     +P   P +  L F++E+I +   K I  D G++KKV+ EG  WE P
Sbjct:   171 PPELAYGED----GSPPVIPPNATLQFDVELISWESVKDICKDGGILKKVLAEGTKWENP 226

Query:   170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
             R   EV      +  DG ++    E +   FT         +   + TM + EKA++ V 
Sbjct:   227 RDRDEVFVKYEVRLEDGTVVA---ESDGVEFTVKDGHFCPAISKAVKTMKKNEKALLTVK 283

Query:   230 SQYLTPSPLMPVVEGCXXXXXXXXXXXXIQ------VRDMLGDGRLIKRRIRDGKG-EFP 282
              QY       P                 ++      V ++  D +++K+ + +G+G E P
Sbjct:   284 PQYGFGEQGRPAARDEAAIPPNATLHINLELVSWKAVTEIGNDKKILKKILHEGEGYERP 343

Query:   283 MDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLP 342
              DC    +L+ V   G L  E+  +F     D D +P EF + E  V EG +  V  M  
Sbjct:   344 SDC----TLVRVKLIGKL--EDGTIFVTRGHDGD-EPFEFKTDEDQVVEGLDKAVLSMKK 396

Query:   343 GEIALVTCPPDYAY--DKFLRPANV-PEGAHIQWEIELLGFEKPKD-WTGLSFDGIMDEA 398
             GE+ALVT PP+YA+  D+  +  +V P  + + +E+EL+ F+K K+ W        ++ A
Sbjct:   397 GEVALVTIPPEYAFGSDETRQDLSVVPPNSTVYYEVELVSFDKEKESWDMKENTEKIEAA 456

Query:   399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL 458
              K +  GN  FK  K+  A  +Y K L    + +   +EE ++    +    LN AAC L
Sbjct:   457 AKKKDEGNAWFKMEKYARASKRYGKALNFIQYDSSFSEEEKQLSKPLKVSCKLNNAACKL 516

Query:   459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
             KL + +++ E C +VL+ +  +VK  YRR  A+M L +F+ A+ D +  +++D
Sbjct:   517 KLKDYKEAKELCTEVLELDSMNVKAFYRRAQAHMYLVDFDLAELDIKKALEID 569

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 148/523 (28%), Positives = 250/523 (47%)

Query:     5 DEDI--NPQKKKAPSEDDKRRMKIVPGSLMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDG 62
             D D+  N +   AP       M+I    L K +++            +V  H T   LDG
Sbjct:    20 DMDLPDNDEADSAPYLKIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDG 79

Query:    63 VIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPV 122
                +S+R     +G P +  LG+  ++ G   GI TM KGE ++F + P++ YGE     
Sbjct:    80 TKFDSSRD----RGTPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGE----T 131

Query:   123 AAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAK 182
              +P T P +  L F++E+I +   K I  D GV KK+I EG+ WE P+   EV     A+
Sbjct:   132 GSPPTIPPNATLQFDVELIAWRSVKDICGDGGVSKKIIVEGEKWEKPKDLDEVYVKYEAR 191

Query:   183 TGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVV 242
               DG ++    +G    FT  +      L   + TM R EK ++ V  QY       P  
Sbjct:   192 LEDGTIV-GKSDGVE--FTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPAS 248

Query:   243 EGCXXXXX-XXXXXXXIQ------VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVH 295
             +G              ++      V ++  D ++IK+ +++G+G    + P   +++ + 
Sbjct:   249 DGLQAAIPPNATLQIDLELVSWKTVVEVTDDRKVIKKILKEGEG---YERPNEGAIVKLK 305

Query:   296 YKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYA 355
               G L  +   VF     + D +P EF   E  V EG E  V  M  GE+AL+T  P+YA
Sbjct:   306 LIGKL-QDGTTVFVKKGHEEDEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYA 364

Query:   356 Y---DKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEG 412
             +   +     A +P  + + +E+EL+ F K K+   ++    ++ A K +  GN LFK G
Sbjct:   365 FGSSESKQELAVIPPNSTVYYEVELVSFIKEKESWDMNTQERIEAAGKKKEEGNVLFKAG 424

Query:   413 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472
             K+  A  +YE+ ++   + +  D+EE K     +   +LN AAC LKL + +++ +   K
Sbjct:   425 KYARASKRYERGVKYIEYDSTFDEEEKKKSKDLKIACNLNDAACKLKLKDYKEAAKLSTK 484

Query:   473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
             VL+ +  +VK +YRR  AY+   + + A+ D +  +++D  ++
Sbjct:   485 VLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNK 527

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 139/499 (27%), Positives = 239/499 (47%)

Query:    25 KIVPGSLMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLG 84
             K +   L K +++            +V  H T   LDG   +S+R     +  P +  LG
Sbjct:    34 KEIQQGLKKKLLKEGEGYETPENGDEVEVHYTGTLLDGTKFDSSRD----RATPFKFTLG 89

Query:    85 KSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144
             + +++ G   GI TM KGE ++F +  ++ YGE      +P T P +  L F++E++ + 
Sbjct:    90 QGQVIKGWDIGIKTMKKGENAVFTIPAELAYGES----GSPPTIPANATLQFDVELLKWD 145

Query:   145 KAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGK 204
               K I  D GV KK++  G+ WE P+   EV     AK  DG ++    +G    FT   
Sbjct:   146 SVKDICKDGGVFKKILAVGEKWENPKDLDEVLVKFEAKLEDGTVV-GKSDGVE--FTVKD 202

Query:   205 SEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCXXXXXXXXXXXXIQ----- 259
                   L   + TM + EK ++ V  QY       P   G             ++     
Sbjct:   203 GHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWK 262

Query:   260 -VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQ 318
              V ++  D +++K+ +++G G    + P   +++ V   G L  ++  VF       + +
Sbjct:   263 TVSEVTDDNKVVKKVLKEGDG---YERPNEGAVVKVKLIGKL--QDGTVFLKKGHGENEE 317

Query:   319 PLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY---DKFLRPANVPEGAHIQWEI 375
             P EF + E  V +G +  V  M  GE+ALVT  P+YA+   +     A VP  + + +E+
Sbjct:   318 PFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEV 377

Query:   376 ELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD 435
             +LL F+K ++   ++ +  ++ A K +  GN  FK GK+ LA  +YEK ++   +     
Sbjct:   378 DLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFS 437

Query:   436 DEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG 495
             +EE K     +   +LN AAC LKL + +++ + C KVL+    +VK LYRR  AYM L 
Sbjct:   438 EEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELS 497

Query:   496 EFEEAQRDFEMMMKVDKSS 514
             + + A+ D +  +++D ++
Sbjct:   498 DLDLAEFDVKKALEIDPNN 516

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 144/472 (30%), Positives = 232/472 (49%)

Query:    50 QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
             +V  H T   LDG   +S+R     +G P +  LG+ +++ G   GI TM KGE ++F +
Sbjct:    66 EVEVHYTGTLLDGKKFDSSRD----RGTPFKFKLGQGQVIKGWDLGIKTMKKGENAVFTI 121

Query:   110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
              P + YGE      +P T P    L F++E++ +   K I  D G+ KK++ EG+ WE P
Sbjct:   122 PPDLAYGES----GSPPTIPASATLQFDVELLSWTSVKDICQDGGIFKKILKEGEKWENP 177

Query:   170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
             +   EV     A+  DG +I S  EG    FT         L   + TM + EK ++ V 
Sbjct:   178 KDLDEVFVKYEARLEDGTVI-SKSEGAE--FTVKDGFFCPALAKAVKTMKKAEKVLLTVK 234

Query:   230 SQYLTPSPLMPVV--EGCXXXXXXXXXXXXI----QVRDMLGDGRLIKRRIRDGKGEFPM 283
              QY       P    EG             +     V ++  D +++K+ + +G G    
Sbjct:   235 PQYGFGENGRPAAGEEGAVPPNATLLVNLELVSWKTVTEIGDDKKILKKVLTEGTG---Y 291

Query:   284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDG-QPLEFSSGEGLVPEGFEMCVRLMLP 342
             + P   +++ V   G L  ++  +F  T+  +D  +P EF + E  V +G +  V  M  
Sbjct:   292 ERPNEGAVVKVKITGKL--QDGTIF--TKKGHDEPEPFEFKTDEEEVIDGIDRAVLNMKN 347

Query:   343 GEIALVTCPPDYAYDKFLRP---ANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAE 399
             GE+ALVT PP+YA+         A VP  + + +E+EL+ F K K+   L+    ++ A 
Sbjct:   348 GEVALVTIPPEYAFGSTESKQDLAVVPPNSTVIYEVELVSFVKDKESWDLNNTEKIETAG 407

Query:   400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK 459
               +  GN LFK GK+  A  +YEK  +   + +   ++E K     +   +LN AAC LK
Sbjct:   408 AKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQLKVTCNLNNAACKLK 467

Query:   460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
             L + +++ + C KVL+ +  +VK LYRR  AYM L + E A+ D +  +++D
Sbjct:   468 LKDYKQAEKLCTKVLELDSQNVKALYRRAQAYMQLADLELAEVDIKKALEID 519

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q95L05 FKBP5 "Peptidyl-prolyl cis-trans isomerase FKBP5" [Chlorocebus aethiops (taxid:9534)]

 Score = 345 (126.5 bits), Expect = 2.9e-31, P = 2.9e-31
 Identities = 104/370 (28%), Positives = 173/370 (46%)

Query:   152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
             D GV+K V   G G ETP    +V      K  +GK    SH   EP+ F+ GKS+V K 
Sbjct:    30 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFNSSHDRNEPFVFSLGKSQVIKA 89

Query:   211 LEMGIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCXXXXXXXXXXXXIQVRDMLGDGRL 269
              ++G+ TM + E   +    +Y   S   +P +                +  D+L DG +
Sbjct:    90 WDIGVATMKKGEICHLLCKPEYAYGSAGSVPKIPS-NATLFFEIELLDFKGEDLLEDGGI 148

Query:   270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL- 328
             I+R  R G+G      P   + + +H +G      +++F       D + + F+ GEG  
Sbjct:   149 IRRTKRKGEG---YSNPNEGATVEIHLEGRC---GERMF-------DCRDVAFTVGEGED 195

Query:   329 --VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
               +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct:   196 HDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query:   386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
                +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct:   256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMRAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query:   446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                  LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct:   316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query:   506 MMMKVDKSSE 515
              +++V+  ++
Sbjct:   376 KVLEVNPQNK 385

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

UNIPROTKB|F1NIM4 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 344 (126.2 bits), Expect = 3.8e-31, P = 3.8e-31
 Identities = 109/374 (29%), Positives = 184/374 (49%)

Query:   152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDG-KLILSHREGEPYFFTFGKSEVPKG 210
             D GV+K V  EG G E+P    +V    +    DG K   S    + + F  GK EV K 
Sbjct:    23 DEGVLKVVKREGTGTESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKFSFDLGKGEVIKA 82

Query:   211 LEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLGD- 266
              ++ + TM   E   I    +Y   L  SP  P +                +  D+  D 
Sbjct:    83 WDIAVATMKVGEICQITCKPEYAYGLAGSP--PKIPP-NATLIFEIELFEFKGEDLTDDE 139

Query:   267 -GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
              G +I RRIR  KGE  +  P   +L+ + ++G   +   + F       D + L F  G
Sbjct:   140 DGGII-RRIRK-KGEGYLK-PNEGALVEIQFEGRYRD---RAF-------DKRELRFEIG 186

Query:   326 EGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFE 381
             EG    +P G E  ++ M   E ++    P+Y +    +    +P  A +Q+E++L  FE
Sbjct:   187 EGDNYDLPHGLEKAIQKMEKSEESIFYLKPNYGFGSTGKEKFQIPPDAELQYEVKLKSFE 246

Query:   382 KPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV 441
             K K+   ++ +  ++++  ++  G + FKEGK++ A  +Y+K++    H +   DEE   
Sbjct:   247 KAKESWEMNTEEKLEQSCMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTK 306

Query:   442 FVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ 501
                 R   HLN+A C LKL E  +++E CNK L+ + ++ KGL+RRG A++A+ +FE A+
Sbjct:   307 AKSLRLAAHLNLAMCHLKLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELAR 366

Query:   502 RDFEMMMKVDKSSE 515
              DF+ ++++  S++
Sbjct:   367 GDFQKVIQLYPSNK 380

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1NP08 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 344 (126.2 bits), Expect = 3.8e-31, P = 3.8e-31
 Identities = 109/374 (29%), Positives = 184/374 (49%)

Query:   152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDG-KLILSHREGEPYFFTFGKSEVPKG 210
             D GV+K V  EG G E+P    +V    +    DG K   S    + + F  GK EV K 
Sbjct:    23 DEGVLKVVKREGTGTESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKFSFDLGKGEVIKA 82

Query:   211 LEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLGD- 266
              ++ + TM   E   I    +Y   L  SP  P +                +  D+  D 
Sbjct:    83 WDIAVATMKVGEICQITCKPEYAYGLAGSP--PKIPP-NATLIFEIELFEFKGEDLTDDE 139

Query:   267 -GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
              G +I RRIR  KGE  +  P   +L+ + ++G   +   + F       D + L F  G
Sbjct:   140 DGGII-RRIRK-KGEGYLK-PNEGALVEIQFEGRYRD---RAF-------DKRELRFEIG 186

Query:   326 EGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFE 381
             EG    +P G E  ++ M   E ++    P+Y +    +    +P  A +Q+E++L  FE
Sbjct:   187 EGDNYDLPHGLEKAIQKMEKSEESIFYLKPNYGFGSTGKEKFQIPPDAELQYEVKLKSFE 246

Query:   382 KPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV 441
             K K+   ++ +  ++++  ++  G + FKEGK++ A  +Y+K++    H +   DEE   
Sbjct:   247 KAKESWEMNTEEKLEQSCMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTK 306

Query:   442 FVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ 501
                 R   HLN+A C LKL E  +++E CNK L+ + ++ KGL+RRG A++A+ +FE A+
Sbjct:   307 AKSLRLAAHLNLAMCHLKLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELAR 366

Query:   502 RDFEMMMKVDKSSE 515
              DF+ ++++  S++
Sbjct:   367 GDFQKVIQLYPSNK 380

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7DMA9	PAS1_ARATH	5, ., 2, ., 1, ., 8	0.7495	0.9927	0.8661	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.976
4th Layer	5.2.1.8	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	554
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-17
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	8e-17
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	3e-16
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	8e-08
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-07
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	3e-07
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	2e-06
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	9e-06
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	1e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	5e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.001
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.001
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	0.002

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 76.6 bits (189), Expect = 4e-17
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 15/109 (13%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  +K G ++ A   YEK L     ++P + +            + N+AA   KLG+  
Sbjct: 7   GNLYYKLGDYDEALEYYEKAL----ELDPDNAD-----------AYYNLAAAYYKLGKYE 51

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513
           +++E   K L+ +P + K  Y  G+AY  LG++EEA   +E  +++D +
Sbjct: 52  EALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 75.4 bits (186), Expect = 8e-17
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 294 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 353
           VHY G L +    VF  ++  + G+P EF+ G G V  G++  +  M  GE   +T PP+
Sbjct: 13  VHYTGKLED--GTVFDSSK--DRGKPFEFTLGSGQVIPGWDEGLLGMKVGEKRKLTIPPE 68

Query: 354 YAY-DKFLRPANVPEGAHIQWEIELL 378
            AY ++ L    +P  A + +E+ELL
Sbjct: 69  LAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 74.2 bits (183), Expect = 3e-16
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 41  GDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML 100
           G      GD V  H T +  DG + +S++        P    LG  +++ G  EG+  M 
Sbjct: 1   GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGK----PFEFTLGSGQVIPGWDEGLLGMK 56

Query: 101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMI 141
            GE     + P++ YGE+     A    P +  L FE+E++
Sbjct: 57  VGEKRKLTIPPELAYGEEG---LAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE-FEEAQRDFEM 506
               N+   L KLG+  ++IEA  K L+ +P + +  Y   +AY+ LG+ +EEA  D E 
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 507 MMKVDK 512
            +++D 
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
           LN+     KLG+  +++E   K L+ +P +    Y    AY  LG++EEA  D+E  +++
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 511 DKSS 514
           D  +
Sbjct: 64  DPDN 67

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 49.2 bits (118), Expect = 8e-08
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 16/84 (19%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D AE ++  GN LFK G ++ A   YEK L     ++P + E            + N+A 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALE----LDPDNAE-----------AYYNLAL 45

Query: 456 CLLKLGECRKS-IEACNKVLDANP 478
             LKLG+  +  +E   K L+ +P
Sbjct: 46  AYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 17/143 (11%)

Query: 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 457
           A K++  GN+ ++   F  A   Y K +         + +   V+       + N AAC 
Sbjct: 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAI---------ECKPDPVY-------YSNRAACH 170

Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD 517
             LG+  K +E     L+ +P + K L RR  AY  LG++ +A  D      +D      
Sbjct: 171 NALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ 230

Query: 518 ATAALSK-LKKQRQVKLKVRLEN 539
           +  A+ + LKK  + K K  LE 
Sbjct: 231 SAQAVERLLKKFAESKAKEILET 253

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 165 GWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEK 223
           G E  +    V    + K  DG +  S +  G+P+ FT G  +V  G + G+  M   EK
Sbjct: 1   GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 224 AVIYVTSQYLTPS--PLMPVVEGCEEVHFEVELV 255
             + +  +           V+     + FEVEL+
Sbjct: 61  RKLTIPPELAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 10/114 (8%)

Query: 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 326
             L  + ++ G G  P         + VHY G L++    VF D+  D  GQP EF  G 
Sbjct: 101 SGLQYKVLKAGDGAAPKK----GDTVTVHYTGTLID--GTVF-DSSYDR-GQPAEFPLGG 152

Query: 327 GLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
             V  G++  ++ M  G    +T PP+ AY +   P  +P  + + +E+ELL  
Sbjct: 153 --VIPGWDEGLQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDV 204

Length = 205

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 46.3 bits (110), Expect = 9e-06
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 13/137 (9%)

Query: 9   NPQKKKAPSEDDKRRMKIV--PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVE 66
           N  + KA  E + +   +   P  L   V++ G G   P  GD V  H T   +DG + +
Sbjct: 79  NAAEGKAFLEKNAKEKGVKTLPSGLQYKVLKAGDGA-APKKGDTVTVHYTGTLIDGTVFD 137

Query: 67  STRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPS 126
           S+      +G P    LG   ++ G  EG+  M  G      + P++ YGE       P 
Sbjct: 138 SSYD----RGQPAEFPLGG--VIPGWDEGLQGMKVGGKRKLTIPPELAYGERG----VPG 187

Query: 127 TFPKDEELHFEIEMIDF 143
             P +  L FE+E++D 
Sbjct: 188 VIPPNSTLVFEVELLDV 204

Length = 205

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
            L+ G+  +++ A    L   P   + L   G A +  G   EA       +  D
Sbjct: 7   ALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Length = 65

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 24/158 (15%)

Query: 410 KEGKFELAKAKYEKVLR-DFNHVN-----------PQDDEEGKVFVGKRNLLH------- 450
           +EG  + A  ++EKVL  D  ++              ++EE   ++ K   L+       
Sbjct: 511 QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA 570

Query: 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
           L +A   L  G+ +K++   N+  DA P   +     G A +A G+  +A   F+ ++ +
Sbjct: 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL 630

Query: 511 DKSSEPDATAALSKLKK-QRQVKLKVRLENSLKGCLTR 547
                PD+  AL  L      +K   +   SLK  L  
Sbjct: 631 Q----PDSALALLLLADAYAVMKNYAKAITSLKRALEL 664

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 449 LHLNVAACLLKLGECRKSIEACNKVL-------DANPAHVKGLYRRGMAYMALGEFEEAQ 501
              N+A  L +LG+  +++E   K L       + +P   + L      Y+ALG+++EA 
Sbjct: 7   ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 502 RDFE 505
              E
Sbjct: 67  EYLE 70

Length = 78

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 42.1 bits (97), Expect = 5e-04
 Identities = 32/143 (22%), Positives = 49/143 (34%), Gaps = 14/143 (9%)

Query: 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL 448
           L      D A  + +    L K G+ E A    EK L      N                
Sbjct: 50  LELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPN-------------LAE 96

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM-AYMALGEFEEAQRDFEMM 507
             LN+   L  LG+  +++E   K L  +P          + A   LG++EEA   +E  
Sbjct: 97  ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKA 156

Query: 508 MKVDKSSEPDATAALSKLKKQRQ 530
           +++D      A A L+       
Sbjct: 157 LELDPELNELAEALLALGALLEA 179

Length = 291

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 36.6 bits (86), Expect = 0.001
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513
            K LY  G AY+ LG+++EA   +E  ++++ +
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 481 VKGLYRRGMAYMALGEFEEAQRDFE 505
            + LY  G+AY  LG++EEA   +E
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYE 25

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502
              K L+ +P + +  Y   +  + LG+++EA +
Sbjct: 1   LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34

Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	554
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	100.0
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.96
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.96
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.95
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.94
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.93
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.89
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.89
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.88
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.86
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.83
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.81
KOG0553	304	consensus TPR repeat-containing protein [General f	99.81
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.8
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.78
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.78
KOG4234	271	consensus TPR repeat-containing protein [General f	99.77
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.74
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.72
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.62
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.61
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.61
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.6
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	99.59
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.54
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.53
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.5
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.49
PRK15359	144	type III secretion system chaperone protein SscB;	99.49
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.49
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.47
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.47
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.45
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.42
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.4
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.39
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.36
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.35
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.28
PRK11189	296	lipoprotein NlpI; Provisional	99.26
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.25
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.24
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.2
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.18
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.17
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.15
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.1
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.07
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.04
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.03
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.01
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.01
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.01
PRK15359	144	type III secretion system chaperone protein SscB;	99.0
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.0
KOG1126	638	consensus DNA-binding cell division cycle control	99.0
PRK12370	553	invasion protein regulator; Provisional	98.99
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.99
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.98
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.97
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.97
PRK15331	165	chaperone protein SicA; Provisional	98.97
PRK12370	553	invasion protein regulator; Provisional	98.95
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.94
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.93
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.93
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.92
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.9
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.89
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.89
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.89
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.88
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.87
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.86
PRK11189	296	lipoprotein NlpI; Provisional	98.86
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.84
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.83
KOG1125	579	consensus TPR repeat-containing protein [General f	98.82
PRK10803	263	tol-pal system protein YbgF; Provisional	98.78
KOG4555	175	consensus TPR repeat-containing protein [Function	98.77
PF13512	142	TPR_18: Tetratricopeptide repeat	98.77
KOG1126	638	consensus DNA-binding cell division cycle control	98.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.76
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.74
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.74
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.73
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.73
PF13371	73	TPR_9: Tetratricopeptide repeat	98.73
PLN02789	320	farnesyltranstransferase	98.73
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.72
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.72
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.71
KOG0553	304	consensus TPR repeat-containing protein [General f	98.7
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.7
PLN02789	320	farnesyltranstransferase	98.7
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.69
KOG2076	895	consensus RNA polymerase III transcription factor	98.67
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.66
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.66
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.66
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.65
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.63
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.63
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.62
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.59
PRK01490	435	tig trigger factor; Provisional	98.59
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.57
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.56
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.56
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.55
KOG1129	478	consensus TPR repeat-containing protein [General f	98.55
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.55
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.54
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.54
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.53
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.53
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.52
KOG2003	840	consensus TPR repeat-containing protein [General f	98.51
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.5
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.49
PF12688	120	TPR_5: Tetratrico peptide repeat	98.48
KOG1310	758	consensus WD40 repeat protein [General function pr	98.47
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.46
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.45
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.44
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.42
PRK14574	822	hmsH outer membrane protein; Provisional	98.42
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.39
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.37
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.36
PF13371	73	TPR_9: Tetratricopeptide repeat	98.35
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.35
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.32
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.31
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.3
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.3
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.28
KOG2076	895	consensus RNA polymerase III transcription factor	98.27
KOG1125	579	consensus TPR repeat-containing protein [General f	98.25
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.24
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.24
PRK01490	435	tig trigger factor; Provisional	98.22
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.22
PRK14574	822	hmsH outer membrane protein; Provisional	98.22
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.22
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.21
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.17
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.17
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.17
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.16
PRK10803	263	tol-pal system protein YbgF; Provisional	98.16
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.12
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.11
PRK11906	458	transcriptional regulator; Provisional	98.11
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.09
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.06
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.03
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.03
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.02
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.01
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.01
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.0
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	98.0
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.97
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.95
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.95
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.92
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.91
PF13431	34	TPR_17: Tetratricopeptide repeat	97.91
KOG1129	478	consensus TPR repeat-containing protein [General f	97.9
PRK11906	458	transcriptional regulator; Provisional	97.89
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.89
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.89
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.88
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.84
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.84
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.82
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.8
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.8
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.77
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.75
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.75
PF12688	120	TPR_5: Tetratrico peptide repeat	97.73
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.71
PF13428	44	TPR_14: Tetratricopeptide repeat	97.71
PF13428	44	TPR_14: Tetratricopeptide repeat	97.69
KOG4234	271	consensus TPR repeat-containing protein [General f	97.69
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.69
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.62
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.6
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.59
KOG2003	840	consensus TPR repeat-containing protein [General f	97.58
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.57
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.57
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.57
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.56
PRK15331	165	chaperone protein SicA; Provisional	97.56
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.52
KOG4555	175	consensus TPR repeat-containing protein [Function	97.51
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.48
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.48
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.46
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.46
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.46
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.44
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.42
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.42
PRK10941	269	hypothetical protein; Provisional	97.41
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.4
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.39
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.38
PF13512	142	TPR_18: Tetratricopeptide repeat	97.37
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.33
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.28
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.22
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.21
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.16
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.13
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.11
KOG3364	149	consensus Membrane protein involved in organellar	97.1
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.06
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.97
PF13431	34	TPR_17: Tetratricopeptide repeat	96.96
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.95
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.9
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.89
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.88
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.68
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.65
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.63
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.62
KOG1586	288	consensus Protein required for fusion of vesicles	96.61
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.58
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.56
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.48
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.45
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.43
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.42
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.3
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.29
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.28
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.28
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.28
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.27
KOG1586	288	consensus Protein required for fusion of vesicles	96.25
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.24
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.22
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.19
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.16
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.1
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.06
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.02
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.01
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.01
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.98
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.97
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.97
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.93
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.73
PRK04841	903	transcriptional regulator MalT; Provisional	95.7
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.67
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.66
PLN03218	1060	maturation of RBCL 1; Provisional	95.62
PLN03218	1060	maturation of RBCL 1; Provisional	95.61
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	95.6
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.6
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.56
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.55
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.34
KOG1585	308	consensus Protein required for fusion of vesicles	95.33
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.27
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.23
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.21
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.19
PRK04841	903	transcriptional regulator MalT; Provisional	95.14
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.12
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	94.99
KOG2471	696	consensus TPR repeat-containing protein [General f	94.96
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.93
COG2912	269	Uncharacterized conserved protein [Function unknow	94.91
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.9
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	94.85
KOG2471	696	consensus TPR repeat-containing protein [General f	94.79
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.76
KOG2796	366	consensus Uncharacterized conserved protein [Funct	94.74
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.7
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.58
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	94.55
COG3947	361	Response regulator containing CheY-like receiver a	94.54
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	94.15
PLN03077	857	Protein ECB2; Provisional	94.04
KOG3364	149	consensus Membrane protein involved in organellar	94.0
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.94
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.89
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.88
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.83
PLN03077	857	Protein ECB2; Provisional	93.82
PF03704	146	BTAD: Bacterial transcriptional activator domain;	93.54
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	93.49
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.43
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.27
KOG1585	308	consensus Protein required for fusion of vesicles	93.25
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.19
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	93.16
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.04
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.79
PRK10941	269	hypothetical protein; Provisional	92.72
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.71
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	92.69
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	92.6
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	92.46
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.38
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.2
COG4976	287	Predicted methyltransferase (contains TPR repeat)	91.43
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	91.09
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	91.01
KOG4814	872	consensus Uncharacterized conserved protein [Funct	90.8
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.78
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	90.77
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	90.75
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	90.71
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.55
PHA02537	230	M terminase endonuclease subunit; Provisional	89.86
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	89.68
COG3898	531	Uncharacterized membrane-bound protein [Function u	89.67
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.56
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	89.51
KOG2422	665	consensus Uncharacterized conserved protein [Funct	89.47
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	89.37
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.34
KOG2300	629	consensus Uncharacterized conserved protein [Funct	88.79
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.76
KOG2300	629	consensus Uncharacterized conserved protein [Funct	88.54
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	88.52
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	88.25
KOG2047	835	consensus mRNA splicing factor [RNA processing and	88.17
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.99
PF04212	69	MIT: MIT (microtubule interacting and transport) d	87.73
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	87.73
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	87.18
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	86.99
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	86.85
COG3118	304	Thioredoxin domain-containing protein [Posttransla	86.72
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	86.71
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	86.31
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	86.0
KOG1550	552	consensus Extracellular protein SEL-1 and related	85.83
cd02656	75	MIT MIT: domain contained within Microtubule Inter	85.63
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	85.52
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	85.22
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	85.0
KOG1463	411	consensus 26S proteasome regulatory complex, subun	84.67
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	84.45
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	84.44
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	84.33
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	82.92
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	81.77
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	81.7
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	81.5
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	81.17
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	81.12
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	80.79
KOG2581	493	consensus 26S proteasome regulatory complex, subun	80.71

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.5e-65  Score=499.83  Aligned_cols=354  Identities=38%  Similarity=0.604  Sum_probs=329.5

Q ss_pred             ecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCC
Q 008780          161 NEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP  240 (554)
Q Consensus       161 ~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~  240 (554)
                      .+|.|+++|..||.|.+||++++.||+.|+||.+++|+.|.+|.|+++.+|..++.+|+.|+             ...+|
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~g~-------------~~~pp   67 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKKGE-------------AGSPP   67 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCccccccccccccccccc-------------cCCCC
Confidence            37899999999999999999999999999999889999999999999999999999999844             24678


Q ss_pred             CCCCcceEEEEEeeeeeeeeecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCe
Q 008780          241 VVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPL  320 (554)
Q Consensus       241 ~ip~~~~l~~~v~l~~~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~  320 (554)
                      .+|++++|.|+|+|+          ||+|+|+|+++|.|.  ..+|..+..|++||.|++.+  + +|+++.     ..+
T Consensus        68 ~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd--~~~P~~g~~V~v~~~G~~~~--~-~f~~~~-----~~f  127 (397)
T KOG0543|consen   68 KIPSNATLLFEVELL----------DGGIIKRIIREGEGD--YSRPNKGAVVKVHLEGELED--G-VFDQRE-----LRF  127 (397)
T ss_pred             CCCCCcceeeeeccc----------CCceEEeeeecCCCC--CCCCCCCcEEEEEEEEEECC--c-ceeccc-----cce
Confidence            899999999999998          899999999999996  34689999999999999977  4 665443     348


Q ss_pred             EEEcCC-CCchHHHHHHHhcCCcCcEEEEEeCCCCccc-cCCCCCCCCCCCeEEEEEEEcccc-cCCCCCCCChhhhhHH
Q 008780          321 EFSSGE-GLVPEGFEMCVRLMLPGEIALVTCPPDYAYD-KFLRPANVPEGAHIQWEIELLGFE-KPKDWTGLSFDGIMDE  397 (554)
Q Consensus       321 ~f~lG~-~~v~~g~~~~l~~M~~GE~~~~~i~~~~~yg-~~g~~~~ip~~~~l~~~ieL~~~~-~~~~~~~~~~~~~~~~  397 (554)
                      .|.+|+ ..||.||+.||..|++||++.|+|+|+|+|| ..++++.||||+++.|+|+|+++. .....|.|..++++..
T Consensus       128 e~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~  207 (397)
T KOG0543|consen  128 EFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEA  207 (397)
T ss_pred             EEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHH
Confidence            888988 5799999999999999999999999999999 667788999999999999999999 6677788888889999


Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      |...++.||.+|++|+|..|...|++|+.+|++..+.++++.+...+++..||+|+|+||+|+++|..|+.+|+++|+++
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~  287 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD  287 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccccc
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f~~~~~  550 (554)
                      |+|+||+||+|+|+..+++|+.|+.+|++|++++|+| .+++..|..|+++.+ ++++++  ++|++||.+.+.
T Consensus       288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l~~k~~~~~~kek--k~y~~mF~k~~~  358 (397)
T KOG0543|consen  288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKLKQKIREYEEKEK--KMYANMFAKLAE  358 (397)
T ss_pred             CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcccc
Confidence            9999999999999999999999999999999999999 789999999999998 888888  999999998653

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.7e-35  Score=284.93  Aligned_cols=351  Identities=25%  Similarity=0.348  Sum_probs=269.2

Q ss_pred             ecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccC
Q 008780           37 RPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYG  116 (554)
Q Consensus        37 ~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg  116 (554)
                      ++|.|..+|..||.|.+||++++.||+.||||.+     +.|+.|.+|.|+++.||+.++..|+.              |
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-----~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g   61 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-----GDPFKFDLGKGSVIKGWDLGVATMKK--------------G   61 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecCCeecccccC-----CCceeeecCCCccccccccccccccc--------------c
Confidence            4799998899999999999999999999999995     67999999999999999999999998              5


Q ss_pred             CCCCCCCCCCCCCCCCceEEEEEEEeeeccccccCCCCeEEEEEecCCC-cCCCCCCceEEEEEEEEeCCCcEEEecCCC
Q 008780          117 EDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTGDGKLILSHREG  195 (554)
Q Consensus       117 ~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~gl~k~i~~~g~g-~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~  195 (554)
                      ..+.|    +.||++++|.|+|+|+          |.+++++|+++|.| ...|..|..|+|||.+++.++ +|+++.  
T Consensus        62 ~~~~p----p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~--  124 (397)
T KOG0543|consen   62 EAGSP----PKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRE--  124 (397)
T ss_pred             ccCCC----CCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccc--
Confidence            55554    8899999999999998          78999999999999 899999999999999999888 555443  


Q ss_pred             ccEEEEeCC-CCccchHHHHhccCCcCcEEEEEEeCCccCCC--CCCCCCCCcceEEEEEeeeeeeeeecccCCccEEEE
Q 008780          196 EPYFFTFGK-SEVPKGLEMGIGTMTREEKAVIYVTSQYLTPS--PLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKR  272 (554)
Q Consensus       196 ~p~~~~~g~-~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~--~~~~~ip~~~~l~~~v~l~~~~~~~d~~~dg~l~k~  272 (554)
                      -.|.|..|+ ..++.||+.+|..|++||.+.|+|+|+|+||+  ..++.|||+++|.|+|+|+++....+.+        
T Consensus       125 ~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s--------  196 (397)
T KOG0543|consen  125 LRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDES--------  196 (397)
T ss_pred             cceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccc--------
Confidence            237777887 57999999999999999999999999999995  4668999999999999999995211100        


Q ss_pred             EeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCC-CchHHHHHHHhcCCcCcEEEEEeC
Q 008780          273 RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG-LVPEGFEMCVRLMLPGEIALVTCP  351 (554)
Q Consensus       273 il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~-~v~~g~~~~l~~M~~GE~~~~~i~  351 (554)
                            +.       ......+.+..+.- +.|+             .-|.-|.- ..+.-++.|+.-|.          
T Consensus       197 ------~~-------~~~~e~l~~A~~~k-e~Gn-------------~~fK~gk~~~A~~~Yerav~~l~----------  239 (397)
T KOG0543|consen  197 ------WK-------MFAEERLEAADRKK-ERGN-------------VLFKEGKFKLAKKRYERAVSFLE----------  239 (397)
T ss_pred             ------cc-------cchHHHHHHHHHHH-Hhhh-------------HHHhhchHHHHHHHHHHHHHHhh----------
Confidence                  00       00000000000000 0011             12223221 13344555554431          


Q ss_pred             CCCccccCCCCCCCCCCCeEEEEEEEcccccCCCCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc
Q 008780          352 PDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV  431 (554)
Q Consensus       352 ~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~  431 (554)
                        |.  .     ..++                 +   ..-...--....+.+.+-++.+.++|..|+..-.++|+    +
T Consensus       240 --~~--~-----~~~~-----------------e---e~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe----~  286 (397)
T KOG0543|consen  240 --YR--R-----SFDE-----------------E---EQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE----L  286 (397)
T ss_pred             --cc--c-----cCCH-----------------H---HHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh----c
Confidence              00  0     0000                 0   00000111234567889999999999999999999999    8


Q ss_pred             CCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 008780          432 NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA-QRDFEMMMKV  510 (554)
Q Consensus       432 ~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A-~~~~~~al~l  510 (554)
                      +|.+           ..+++.+|.|++.+++|+.|+..+++|++++|.|-.+.-.+..+.....++.+. .+.|.+.+..
T Consensus       287 ~~~N-----------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  287 DPNN-----------VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             CCCc-----------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9988           899999999999999999999999999999999988888888888888877766 6777777775


Q ss_pred             CC
Q 008780          511 DK  512 (554)
Q Consensus       511 ~P  512 (554)
                      -+
T Consensus       356 ~~  357 (397)
T KOG0543|consen  356 LA  357 (397)
T ss_pred             cc
Confidence            43

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.4e-35  Score=265.15  Aligned_cols=276  Identities=26%  Similarity=0.350  Sum_probs=239.5

Q ss_pred             CCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHhcCCcCc
Q 008780          265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE  344 (554)
Q Consensus       265 ~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~~M~~GE  344 (554)
                      .-.+|.|+|+..|.|..|..+  .|..|++||.....++.+++++||+.  .|+|+++.+|..+-.+-|+.+|.+|+++|
T Consensus         8 ~~~gv~Kril~~G~g~l~e~~--dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~E   83 (329)
T KOG0545|consen    8 NVEGVKKRILHGGTGELPEFI--DGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHE   83 (329)
T ss_pred             cchhhhHhhccCCCccCcccc--CCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhh
Confidence            446789999999999988775  58999999999999988889988875  69999999999999999999999999999


Q ss_pred             EEEEEeCCCC--------------ccccCCCC--------------------C---CCCCCCeEEEEEEEcccccCC---
Q 008780          345 IALVTCPPDY--------------AYDKFLRP--------------------A---NVPEGAHIQWEIELLGFEKPK---  384 (554)
Q Consensus       345 ~~~~~i~~~~--------------~yg~~g~~--------------------~---~ip~~~~l~~~ieL~~~~~~~---  384 (554)
                      .+.|+|....              +.|+....                    .   ....-.+|+|.|+|+.++.|.   
T Consensus        84 vaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq  163 (329)
T KOG0545|consen   84 VAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQ  163 (329)
T ss_pred             HHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhc
Confidence            9999995421              11221100                    0   000015799999999999874   


Q ss_pred             -CCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc----CCCChhHHHHHhhhHHHHHHHHHHHHHH
Q 008780          385 -DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLK  459 (554)
Q Consensus       385 -~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~----~p~~~ee~~~~~~~~~~~~~nla~~~~k  459 (554)
                       +.|.|+-++++.....+.++||.+|+.|+|.+|..+|+.|+..++++    .|.+ .+|.++......++.|.+.|+++
T Consensus       164 ~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e-~eW~eLdk~~tpLllNy~QC~L~  242 (329)
T KOG0545|consen  164 RETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGE-PEWLELDKMITPLLLNYCQCLLK  242 (329)
T ss_pred             cccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCC-hHHHHHHHhhhHHHHhHHHHHhh
Confidence             56899999999999999999999999999999999999999988775    3554 57888888889999999999999


Q ss_pred             ccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHH
Q 008780          460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLE  538 (554)
Q Consensus       460 l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~  538 (554)
                      .++|-+++++|..+|..+|.|.||||+||.|+...-+..+|.++|.++|+++|.-.+.+..+|+.+..+++ ++...+  
T Consensus       243 ~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr--  320 (329)
T KOG0545|consen  243 KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDR--  320 (329)
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHH--
Confidence            99999999999999999999999999999999999999999999999999999988889999999998887 555666  


Q ss_pred             HHHHhhccc
Q 008780          539 NSLKGCLTR  547 (554)
Q Consensus       539 ~~y~~~f~~  547 (554)
                      ..|++||+.
T Consensus       321 ~~~~kmfs~  329 (329)
T KOG0545|consen  321 LRCRKMFSQ  329 (329)
T ss_pred             HHHHHhcCC
Confidence            789999973

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=8.7e-29  Score=215.92  Aligned_cols=171  Identities=21%  Similarity=0.296  Sum_probs=141.5

Q ss_pred             EecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeecccccc---CCCCeEE
Q 008780           81 HVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIA---DDFGVVK  157 (554)
Q Consensus        81 ~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~---~d~gl~k  157 (554)
                      |++|.+.+++|.+.++.+|+.|+++.+.|||+++||..+..        .-..++|.+.++.+..+....   .+..+..
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I   72 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG--------DLNILVITILLVLLFRASAAEKWNPDEELQI   72 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc--------cccceEEEeeeeehhhhhhhhhcCCCCceeE
Confidence            35788999999999999999999999999999999965543        123577888777765433222   2234444


Q ss_pred             EEEecCC-CcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCC
Q 008780          158 KVINEGQ-GWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTP  235 (554)
Q Consensus       158 ~i~~~g~-g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g  235 (554)
                      .++.+-. .....+.||.|.+||++.+.||++||||+ ++.|++|.+|.|++|+||+.+|.+|++||++.++|||+++||
T Consensus        73 ~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG  152 (188)
T KOG0549|consen   73 GVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYG  152 (188)
T ss_pred             EEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCc
Confidence            4444311 44788999999999999999999999997 577999999999999999999999999999999999999999


Q ss_pred             CCC-CCCCCCcceEEEEEeeeeeee
Q 008780          236 SPL-MPVVEGCEEVHFEVELVHLIQ  259 (554)
Q Consensus       236 ~~~-~~~ip~~~~l~~~v~l~~~~~  259 (554)
                      +++ ++.||+++.|.|+|||+++.+
T Consensus       153 ~~G~~~~IP~~A~LiFdiELv~i~~  177 (188)
T KOG0549|consen  153 ERGAPPKIPGDAVLIFDIELVKIER  177 (188)
T ss_pred             cCCCCCCCCCCeeEEEEEEEEEeec
Confidence            965 566999999999999999964

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.2e-28  Score=215.14  Aligned_cols=175  Identities=23%  Similarity=0.337  Sum_probs=146.5

Q ss_pred             EEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcceEEEEEeeeeeeee---ecccCCccEEEEEeeC
Q 008780          200 FTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQV---RDMLGDGRLIKRRIRD  276 (554)
Q Consensus       200 ~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~~l~~~v~l~~~~~~---~d~~~dg~l~k~il~~  276 (554)
                      +++|.+.+|||++.+|.+|+.||+..+++||+++||....   ..--.+++.+.++.+...   +....+..+.-.++++
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~~   77 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR---GDLNILVITILLVLLFRASAAEKWNPDEELQIGVLKK   77 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCccccccccc---ccccceEEEeeeeehhhhhhhhhcCCCCceeEEEEEC
Confidence            3578899999999999999999999999999999994322   122356777777777643   4455667777777777


Q ss_pred             CCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHhcCCcCcEEEEEeCCCCcc
Q 008780          277 GKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY  356 (554)
Q Consensus       277 G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~~M~~GE~~~~~i~~~~~y  356 (554)
                      -....  .....||.+.+||+|.+.|  |++| ||++. +|+|++|+||.++||+|||.+|.+|++||+..++|||+++|
T Consensus        78 p~~C~--~kak~GD~l~~HY~g~leD--Gt~f-dSS~~-rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgY  151 (188)
T KOG0549|consen   78 PEECP--EKAKKGDTLHVHYTGSLED--GTKF-DSSYS-RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGY  151 (188)
T ss_pred             Ccccc--ccccCCCEEEEEEEEEecC--CCEE-eeecc-CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccC
Confidence            33221  1237899999999999988  9998 55565 78999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCeEEEEEEEcccccC
Q 008780          357 DKFLRPANVPEGAHIQWEIELLGFEKP  383 (554)
Q Consensus       357 g~~g~~~~ip~~~~l~~~ieL~~~~~~  383 (554)
                      |+.|.++.||+++.|.|+|||+.+...
T Consensus       152 G~~G~~~~IP~~A~LiFdiELv~i~~~  178 (188)
T KOG0549|consen  152 GERGAPPKIPGDAVLIFDIELVKIERG  178 (188)
T ss_pred             ccCCCCCCCCCCeeEEEEEEEEEeecC
Confidence            999999899999999999999999874

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.8e-27  Score=182.30  Aligned_cols=106  Identities=30%  Similarity=0.608  Sum_probs=102.6

Q ss_pred             CeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEE
Q 008780           30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM  109 (554)
Q Consensus        30 g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~i  109 (554)
                      |+.++++.+|+|...|+.||.|++||++.+.||+.|||+.+    +++||.|.+|.+++|.||++++..|.+||++.++|
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~d----r~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti   77 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRD----RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTI   77 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccc----cCCCeeEEecCcceeechhhcchhccccccceeee
Confidence            78999999999998899999999999999999999999999    88999999999999999999999999999999999


Q ss_pred             eCCCccCCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780          110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus       110 p~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~  143 (554)
                      +|+++||..|.|    ..||||++|+|+|||+++
T Consensus        78 ~pd~aYG~~G~p----~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   78 SPDYAYGPRGHP----GGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ccccccCCCCCC----CccCCCcEEEEEEEEEec
Confidence            999999999965    789999999999999987

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.1e-26  Score=207.92  Aligned_cols=114  Identities=31%  Similarity=0.623  Sum_probs=106.9

Q ss_pred             ccccccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCC
Q 008780           19 DDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT   98 (554)
Q Consensus        19 ~~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~   98 (554)
                      +.+...+++++||.|++++.|+|.. |+.+|.|.+||++++.||++|||+++    ++.|+.|.+|  ++|+||+++|.+
T Consensus        91 ~k~~~v~~~~sgl~y~~~~~G~G~~-~~~~~~V~vhY~G~l~~G~vFDsS~~----rg~p~~f~l~--~vI~Gw~egl~~  163 (205)
T COG0545          91 AKEKGVKTLPSGLQYKVLKAGDGAA-PKKGDTVTVHYTGTLIDGTVFDSSYD----RGQPAEFPLG--GVIPGWDEGLQG  163 (205)
T ss_pred             cccCCceECCCCcEEEEEeccCCCC-CCCCCEEEEEEEEecCCCCccccccc----cCCCceeecC--CeeehHHHHHhh
Confidence            3445677799999999999999999 99999999999999999999999998    8999999997  999999999999


Q ss_pred             CCCCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780           99 MLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus        99 m~~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~  143 (554)
                      |++|++|+++|||++|||.+|.+    ..||||++|+|+|+|+++
T Consensus       164 M~vG~k~~l~IP~~laYG~~g~~----g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         164 MKVGGKRKLTIPPELAYGERGVP----GVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             CCCCceEEEEeCchhccCcCCCC----CCCCCCCeEEEEEEEEec
Confidence            99999999999999999999975    559999999999999987

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=5.1e-26  Score=174.37  Aligned_cols=107  Identities=36%  Similarity=0.597  Sum_probs=98.8

Q ss_pred             cEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHhcCCcCcEEE
Q 008780          268 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIAL  347 (554)
Q Consensus       268 ~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~~M~~GE~~~  347 (554)
                      ++.+.+|.+|+|.+   .|..|++|++||+|.+.|  |+.| ||+.| +++|++|.+|.|+||.||+.++..|.+||++.
T Consensus         2 Gv~~~~i~~Gdg~t---fpK~Gqtvt~hYtg~L~d--G~kf-DSs~d-r~kPfkf~IGkgeVIkGwdegv~qmsvGekak   74 (108)
T KOG0544|consen    2 GVEKQVISPGDGRT---FPKKGQTVTVHYTGTLQD--GKKF-DSSRD-RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAK   74 (108)
T ss_pred             CceeEEeeCCCCcc---cCCCCCEEEEEEEeEecC--CcEe-ecccc-cCCCeeEEecCcceeechhhcchhccccccce
Confidence            47789999999964   358999999999999988  9998 77777 78999999999999999999999999999999


Q ss_pred             EEeCCCCccccCCCCCCCCCCCeEEEEEEEcccc
Q 008780          348 VTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  381 (554)
Q Consensus       348 ~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~  381 (554)
                      ++|+|+||||..|.+..||||++|.|+|||+++.
T Consensus        75 Lti~pd~aYG~~G~p~~IppNatL~FdVEll~v~  108 (108)
T KOG0544|consen   75 LTISPDYAYGPRGHPGGIPPNATLVFDVELLKVN  108 (108)
T ss_pred             eeeccccccCCCCCCCccCCCcEEEEEEEEEecC
Confidence            9999999999999999999999999999999763

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=8.4e-23  Score=182.98  Aligned_cols=104  Identities=24%  Similarity=0.333  Sum_probs=98.3

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEec-CCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEe
Q 008780          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSH-REGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (554)
Q Consensus       151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~-~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~  229 (554)
                      ...|+.++++..|.| ..|+.++.|+|||++++.||++|||| .+++|+.|++|  ++||||.+||.+|++|++..++||
T Consensus        99 ~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~IP  175 (205)
T COG0545          99 LPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTIP  175 (205)
T ss_pred             CCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEeC
Confidence            557999999999999 88999999999999999999999999 57999999999  999999999999999999999999


Q ss_pred             CCccCCCCCC-CCCCCcceEEEEEeeeee
Q 008780          230 SQYLTPSPLM-PVVEGCEEVHFEVELVHL  257 (554)
Q Consensus       230 ~~~~~g~~~~-~~ip~~~~l~~~v~l~~~  257 (554)
                      |+++||..+. ..||||++|+|+|+|+++
T Consensus       176 ~~laYG~~g~~g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         176 PELAYGERGVPGVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             chhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence            9999999874 449999999999999986

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.89  E-value=1.9e-22  Score=187.97  Aligned_cols=112  Identities=24%  Similarity=0.453  Sum_probs=105.2

Q ss_pred             ccccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCC
Q 008780           21 KRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML  100 (554)
Q Consensus        21 ~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~  100 (554)
                      +...+++++|++|+++++|+|.. |+.||.|.+||++++.||++|++|+.    ++.|+.|.+|  ++++||+++|.+|+
T Consensus        94 ~~gv~~t~sGl~y~vi~~G~G~~-p~~~d~V~v~Y~g~l~dG~vfdss~~----~g~P~~f~l~--~vipG~~eaL~~M~  166 (206)
T PRK11570         94 KEGVNSTESGLQFRVLTQGEGAI-PARTDRVRVHYTGKLIDGTVFDSSVA----RGEPAEFPVN--GVIPGWIEALTLMP  166 (206)
T ss_pred             cCCcEECCCCcEEEEEeCCCCCC-CCCCCEEEEEEEEEECCCCEEEeccC----CCCCeEEEee--chhhHHHHHHcCCC
Confidence            55678899999999999999997 99999999999999999999999997    7789999995  69999999999999


Q ss_pred             CCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780          101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus       101 ~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~  143 (554)
                      +|+++.|+|||+++||..+.+    +.|||+++|+|+|+|++|
T Consensus       167 ~G~k~~~~IP~~lAYG~~g~~----~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        167 VGSKWELTIPHELAYGERGAG----ASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             CCCEEEEEECHHHcCCCCCCC----CCcCCCCeEEEEEEEEEE
Confidence            999999999999999999875    789999999999999987

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.4e-22  Score=186.48  Aligned_cols=117  Identities=24%  Similarity=0.474  Sum_probs=107.5

Q ss_pred             CCcccccccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEec-CCcEEEecccCCCCCCccEE-EecCCCccchhHH
Q 008780           16 PSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIR-HVLGKSKILLGLL   93 (554)
Q Consensus        16 ~~~~~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~-~g~~~~st~~~~~~~~~p~~-~~~g~~~~~~g~~   93 (554)
                      .+++.....+++++||.|+-++.|+|.. |..|+.|.+||.+++. +|++|++++     .+.|+. |.+|.+++|+||+
T Consensus       107 ~~ek~~~~~~tl~~Gl~y~D~~vG~G~~-a~~G~rV~v~Y~Gkl~~~GkvFd~~~-----~~kp~~~f~lg~g~VIkG~d  180 (226)
T KOG0552|consen  107 EVEKQKPKSRTLPGGLRYEDLRVGSGPS-AKKGKRVSVRYIGKLKGNGKVFDSNF-----GGKPFKLFRLGSGEVIKGWD  180 (226)
T ss_pred             cccccCccceecCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEecCCCeEeeccc-----CCCCccccccCCCCCCchHH
Confidence            3444444447889999999999999999 9999999999999998 999999999     467999 9999999999999


Q ss_pred             hhcCCCCCCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780           94 EGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus        94 ~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~  143 (554)
                      .+|.||++|.+++|+|||++|||..+.     +.||||++|+|||+|+.+
T Consensus       181 ~gv~GMkvGGkRrviIPp~lgYg~~g~-----~~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  181 VGVEGMKVGGKRRVIIPPELGYGKKGV-----PEIPPNSTLVFDVELLSV  225 (226)
T ss_pred             HhhhhhccCCeeEEEeCccccccccCc-----CcCCCCCcEEEEEEEEec
Confidence            999999999999999999999999998     589999999999999986

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.86  E-value=3e-21  Score=175.49  Aligned_cols=111  Identities=19%  Similarity=0.326  Sum_probs=101.3

Q ss_pred             cccCCCCeEEEEEec--CCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780           24 MKIVPGSLMKAVMRP--GGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (554)
Q Consensus        24 ~~~~~~g~~~~~~~~--G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~  101 (554)
                      ...+++|++|.+++.  |+|.. |+.||.|.+||++++.||++|++++.     ..|+.|.+|.+++++||+++|.+|++
T Consensus        64 ~~~t~sGl~Y~v~~~~~g~g~~-p~~gd~V~v~Y~~~~~dG~v~~ss~~-----~~P~~f~vg~~~vi~Gl~e~L~~Mk~  137 (177)
T TIGR03516        64 YETSQNGFWYYYNQKDTGEGTT-PEFGDLVTFEYDIRALDGDVIYSEEE-----LGPQTYKVDQQDLFSGLRDGLKLMKE  137 (177)
T ss_pred             ceECCCccEEEEEEecCCCCCc-CCCCCEEEEEEEEEeCCCCEEEeCCC-----CCCEEEEeCCcchhHHHHHHHcCCCC
Confidence            366899999999987  55555 89999999999999999999999985     34999999999999999999999999


Q ss_pred             CcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (554)
Q Consensus       102 Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~  144 (554)
                      ||+++|+|||++|||..|.+    ..||||++|+|+|+|++|.
T Consensus       138 Ge~~~~~iP~~~AYG~~g~~----~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       138 GETATFLFPSHKAYGYYGDQ----NKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             CCEEEEEECHHHcCCCCCCC----CCcCcCCcEEEEEEEEEec
Confidence            99999999999999998864    6799999999999999985

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.83  E-value=4.3e-20  Score=178.39  Aligned_cols=114  Identities=25%  Similarity=0.508  Sum_probs=104.6

Q ss_pred             ccccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCC
Q 008780           21 KRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML  100 (554)
Q Consensus        21 ~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~  100 (554)
                      +.+.+.+++|++|+|+++|+|.. |+.||.|.+||++++.||++|++++.    ++.|+.|.++  ++++||+++|.+|+
T Consensus       138 ~~gv~~t~sGl~y~Vi~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~----~g~p~~f~l~--~vipG~~EaL~~Mk  210 (269)
T PRK10902        138 EKGVKTTSTGLLYKVEKEGTGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRLD--GVIPGWTEGLKNIK  210 (269)
T ss_pred             CCCcEECCCccEEEEEeCCCCCC-CCCCCEEEEEEEEEeCCCCEeecccc----CCCceEEecC--CcchHHHHHHhcCC
Confidence            34567789999999999999997 89999999999999999999999987    6789999884  69999999999999


Q ss_pred             CCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeecc
Q 008780          101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA  146 (554)
Q Consensus       101 ~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~  146 (554)
                      +|+++.|+||++++||..+.     ++||||++|+|+|+|+++...
T Consensus       211 ~Gek~~l~IP~~laYG~~g~-----~gIppns~LvfeVeLl~V~~~  251 (269)
T PRK10902        211 KGGKIKLVIPPELAYGKAGV-----PGIPANSTLVFDVELLDVKPA  251 (269)
T ss_pred             CCcEEEEEECchhhCCCCCC-----CCCCCCCcEEEEEEEEEeccC
Confidence            99999999999999999875     469999999999999999754

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=1.7e-19  Score=166.29  Aligned_cols=106  Identities=23%  Similarity=0.329  Sum_probs=102.1

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeC-CCcEEEecCCCccEE-EEeCCCCccchHHHHhccCCcCcEEEEEE
Q 008780          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTG-DGKLILSHREGEPYF-FTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (554)
Q Consensus       151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~-~g~~~~s~~~~~p~~-~~~g~~~~~~gle~~l~~m~~Ge~~~~~v  228 (554)
                      ...|+++.-++-|.| +.+..|+.|.++|.+++. +|.+|+++..+.|+. |.+|.+++|+||+.++.+|++|.+++|+|
T Consensus       118 l~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrviI  196 (226)
T KOG0552|consen  118 LPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRVII  196 (226)
T ss_pred             cCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEEEe
Confidence            457999999999999 899999999999999998 999999999999999 99999999999999999999999999999


Q ss_pred             eCCccCCCCCCCCCCCcceEEEEEeeeee
Q 008780          229 TSQYLTPSPLMPVVEGCEEVHFEVELVHL  257 (554)
Q Consensus       229 ~~~~~~g~~~~~~ip~~~~l~~~v~l~~~  257 (554)
                      ||++|||..+.+.||+|++|+|+|+|+++
T Consensus       197 Pp~lgYg~~g~~~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  197 PPELGYGKKGVPEIPPNSTLVFDVELLSV  225 (226)
T ss_pred             CccccccccCcCcCCCCCcEEEEEEEEec
Confidence            99999999999999999999999999986

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.81  E-value=2.7e-19  Score=169.72  Aligned_cols=122  Identities=27%  Similarity=0.474  Sum_probs=116.1

Q ss_pred             hhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008780          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (554)
Q Consensus       393 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  472 (554)
                      +....|+.+|.+||.+++.++|.+|+.+|.+||.    ++|.+           +..|+|+|.+|.++|+|..|++.|+.
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~----l~P~n-----------AVyycNRAAAy~~Lg~~~~AVkDce~  140 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIE----LDPTN-----------AVYYCNRAAAYSKLGEYEDAVKDCES  140 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh----cCCCc-----------chHHHHHHHHHHHhcchHHHHHHHHH
Confidence            6788999999999999999999999999999999    99998           78999999999999999999999999


Q ss_pred             HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       473 al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      ||.+||++.|+|.|+|.||..+|+|++|++.|++||+++|+| ...+..|..++++++
T Consensus       141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~N-e~~K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDN-ESYKSNLKIAEQKLN  197 (304)
T ss_pred             HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc-HHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999 578888887777665

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.80  E-value=4.1e-19  Score=161.52  Aligned_cols=107  Identities=20%  Similarity=0.164  Sum_probs=97.9

Q ss_pred             CCCCeEEEEEec--CCCcCCCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEE
Q 008780          151 DDFGVVKKVINE--GQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (554)
Q Consensus       151 ~d~gl~k~i~~~--g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v  228 (554)
                      ...|+.+.+++.  |.| ..|+.||.|++||++++.||++|+|+....|+.|.+|.++++|||+++|.+|++||+++|+|
T Consensus        67 t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~i  145 (177)
T TIGR03516        67 SQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLF  145 (177)
T ss_pred             CCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEE
Confidence            446899998876  555 78999999999999999999999999877899999999999999999999999999999999


Q ss_pred             eCCccCCCCC-CCCCCCcceEEEEEeeeeee
Q 008780          229 TSQYLTPSPL-MPVVEGCEEVHFEVELVHLI  258 (554)
Q Consensus       229 ~~~~~~g~~~-~~~ip~~~~l~~~v~l~~~~  258 (554)
                      ||++|||..+ ...||+|++|+|+|+|+++.
T Consensus       146 P~~~AYG~~g~~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       146 PSHKAYGYYGDQNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             CHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence            9999999864 46799999999999999984

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.78  E-value=1.8e-18  Score=142.36  Aligned_cols=94  Identities=36%  Similarity=0.639  Sum_probs=86.5

Q ss_pred             CCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCC
Q 008780           41 GDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDC  120 (554)
Q Consensus        41 g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~  120 (554)
                      |..+|+.||.|.+||++++.+|++|++++.    .+.|+.|.+|.+++++||+.+|.+|++||++.|.||++++||..+.
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~----~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~   76 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQ----EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGL   76 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETTT----TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTB
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEeee----cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCcccc
Confidence            455689999999999999999999999976    6789999999999999999999999999999999999999999886


Q ss_pred             CCCCCCCCCCCCceEEEEEEE
Q 008780          121 PVAAPSTFPKDEELHFEIEMI  141 (554)
Q Consensus       121 ~~~~~~~ip~~~~l~~~v~l~  141 (554)
                      .   +..||++++|+|+|+|+
T Consensus        77 ~---~~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   77 E---PPKIPPNSTLVFEIELL   94 (94)
T ss_dssp             C---TTTBTTTSEEEEEEEEE
T ss_pred             C---CCCcCCCCeEEEEEEEC
Confidence            3   14699999999999986

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.78  E-value=2.1e-18  Score=160.83  Aligned_cols=105  Identities=22%  Similarity=0.279  Sum_probs=97.3

Q ss_pred             cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEE
Q 008780          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (554)
Q Consensus       150 ~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v  228 (554)
                      ..+.|+.++++++|.| ..|+.+|.|.|||++++.||++|+|+. ++.|+.|.+|  +++|||+++|.+|++|+++.|+|
T Consensus        99 ~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~I  175 (206)
T PRK11570         99 STESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTI  175 (206)
T ss_pred             ECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEE
Confidence            3567999999999999 789999999999999999999999986 5789999996  79999999999999999999999


Q ss_pred             eCCccCCCCC-CCCCCCcceEEEEEeeeee
Q 008780          229 TSQYLTPSPL-MPVVEGCEEVHFEVELVHL  257 (554)
Q Consensus       229 ~~~~~~g~~~-~~~ip~~~~l~~~v~l~~~  257 (554)
                      ||+++||..+ ++.||++++|+|+|+|+++
T Consensus       176 P~~lAYG~~g~~~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        176 PHELAYGERGAGASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             CHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence            9999999964 4579999999999999987

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.77  E-value=9.3e-18  Score=149.19  Aligned_cols=128  Identities=34%  Similarity=0.582  Sum_probs=115.6

Q ss_pred             hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008780          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  471 (554)
Q Consensus       392 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  471 (554)
                      +..+..+..++..||.+|+.|+|..|...|..||+.    .|..      ..+.+..||.|+|.|++|++.|+.|+..|.
T Consensus        89 ~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~----cp~~------~~e~rsIly~Nraaa~iKl~k~e~aI~dcs  158 (271)
T KOG4234|consen   89 DKAIEKADSLKKEGNELFKNGDYEEANSKYQEALES----CPST------STEERSILYSNRAAALIKLRKWESAIEDCS  158 (271)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHh----Cccc------cHHHHHHHHhhhHHHHHHhhhHHHHHHHHH
Confidence            445788999999999999999999999999999994    4433      134567899999999999999999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       472 ~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      +||+++|.+.+|+.|||.+|..+..|++|+.+|++.++++|.+ ..++..+.+|...+.
T Consensus       159 Kaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~-~ear~~i~rl~~~i~  216 (271)
T KOG4234|consen  159 KAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR-REAREAIARLPPKIN  216 (271)
T ss_pred             hhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch-HHHHHHHHhcCHHHH
Confidence            9999999999999999999999999999999999999999998 578888888877776

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.74  E-value=2.7e-17  Score=135.37  Aligned_cols=91  Identities=31%  Similarity=0.439  Sum_probs=83.9

Q ss_pred             CcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCC--CC
Q 008780          165 GWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM--PV  241 (554)
Q Consensus       165 g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~--~~  241 (554)
                      |.+.|+.||.|++||++++.+|++++++. .+.|++|.+|.++++|||+++|.+|++||++.|+|||+++||+.+.  ..
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~   80 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK   80 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence            34679999999999999999999999984 6889999999999999999999999999999999999999998654  45


Q ss_pred             CCCcceEEEEEeee
Q 008780          242 VEGCEEVHFEVELV  255 (554)
Q Consensus       242 ip~~~~l~~~v~l~  255 (554)
                      ||++++|+|+|+|+
T Consensus        81 ip~~~~l~f~Iell   94 (94)
T PF00254_consen   81 IPPNSTLVFEIELL   94 (94)
T ss_dssp             BTTTSEEEEEEEEE
T ss_pred             cCCCCeEEEEEEEC
Confidence            99999999999986

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.72  E-value=5.9e-17  Score=156.65  Aligned_cols=105  Identities=24%  Similarity=0.345  Sum_probs=98.3

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEe
Q 008780          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (554)
Q Consensus       151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~  229 (554)
                      .+.|+.++++++|.| ..|+.||.|+|||.+++.||++|+++. .+.|+.|.++  +++|||+++|.+|++|+++.|+||
T Consensus       144 t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~IP  220 (269)
T PRK10902        144 TSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIP  220 (269)
T ss_pred             CCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEEEC
Confidence            567999999999999 789999999999999999999999886 5789999885  699999999999999999999999


Q ss_pred             CCccCCCCCCCCCCCcceEEEEEeeeeee
Q 008780          230 SQYLTPSPLMPVVEGCEEVHFEVELVHLI  258 (554)
Q Consensus       230 ~~~~~g~~~~~~ip~~~~l~~~v~l~~~~  258 (554)
                      ++++||..+.+.||++++|+|+|+|+++.
T Consensus       221 ~~laYG~~g~~gIppns~LvfeVeLl~V~  249 (269)
T PRK10902        221 PELAYGKAGVPGIPANSTLVFDVELLDVK  249 (269)
T ss_pred             chhhCCCCCCCCCCCCCcEEEEEEEEEec
Confidence            99999998778899999999999999995

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=3.4e-15  Score=151.28  Aligned_cols=118  Identities=29%  Similarity=0.541  Sum_probs=109.0

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+...++.||.+|+.|+|..|+.+|.+||.    .+|.|           ..+|.|+|.||.+++++..|+.+|+.++++
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIk----r~P~D-----------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL  421 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIK----RDPED-----------ARLYSNRAACYLKLGEYPEALKDAKKCIEL  421 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHh----cCCch-----------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            377789999999999999999999999999    88988           899999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      +|++.++|+|.|.|+..+.+|+.|++.|++++++||++ .++...+.++...+.
T Consensus       422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~-~e~~~~~~rc~~a~~  474 (539)
T KOG0548|consen  422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN-AEAIDGYRRCVEAQR  474 (539)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999997 566666666666543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=5.9e-15  Score=147.41  Aligned_cols=108  Identities=31%  Similarity=0.541  Sum_probs=101.4

Q ss_pred             CCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHH
Q 008780          388 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  467 (554)
Q Consensus       388 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~  467 (554)
                      .++.+++++.|..+|.+||.+|+.++|++||.+|.+||+    +.|+.           ...|.|+|.||..+|+|++.+
T Consensus       105 a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~----l~p~e-----------piFYsNraAcY~~lgd~~~Vi  169 (606)
T KOG0547|consen  105 AMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIE----LCPDE-----------PIFYSNRAACYESLGDWEKVI  169 (606)
T ss_pred             ccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHh----cCCCC-----------chhhhhHHHHHHHHhhHHHHH
Confidence            467889999999999999999999999999999999999    88876           679999999999999999999


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       468 ~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      ++|.++|+++|+++|||+||+.||..+|++.+|+.++.-..-+
T Consensus       170 ed~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~  212 (606)
T KOG0547|consen  170 EDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCIL  212 (606)
T ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHh
Confidence            9999999999999999999999999999999999998755444

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.61  E-value=1.2e-14  Score=129.89  Aligned_cols=83  Identities=27%  Similarity=0.397  Sum_probs=75.0

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (554)
Q Consensus        45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~  124 (554)
                      ++.||+|.+||++++.||++|+||+.    .+.|+.|.+|.+++++||+++|.+|++|+++.|.|||+.|||..      
T Consensus         5 i~~~~~V~v~Y~~~~~dG~v~dst~~----~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~------   74 (156)
T PRK15095          5 VQSNSAVLVHFTLKLDDGSTAESTRN----NGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP------   74 (156)
T ss_pred             cCCCCEEEEEEEEEeCCCCEEEECCC----CCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC------
Confidence            68999999999999999999999986    57899999999999999999999999999999999999999976      


Q ss_pred             CCCCCCCCceEEEEEEEee
Q 008780          125 PSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus       125 ~~~ip~~~~l~~~v~l~~~  143 (554)
                            +..++..|....+
T Consensus        75 ------d~~~v~~vp~~~f   87 (156)
T PRK15095         75 ------SPDLIQYFSRRDF   87 (156)
T ss_pred             ------ChHHEEEecHHHC
Confidence                  4577777765555

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.60  E-value=3e-15  Score=143.32  Aligned_cols=121  Identities=26%  Similarity=0.432  Sum_probs=111.6

Q ss_pred             hhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 008780          391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  470 (554)
Q Consensus       391 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  470 (554)
                      .++.++.+..++++||.||++|+|++|+.||.+++.    +.|.+           ...+.|+|.+|+++++|..|...|
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia----~~P~N-----------pV~~~NRA~AYlk~K~FA~AE~DC  154 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA----VYPHN-----------PVYHINRALAYLKQKSFAQAEEDC  154 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc----cCCCC-----------ccchhhHHHHHHHHHHHHHHHHhH
Confidence            567788888999999999999999999999999999    88887           678999999999999999999999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       471 ~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      ..|+.+|..+.|||-|||.|...||...+|.++++.+|+|+|++ .+++..++.+..
T Consensus       155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~-~ELkK~~a~i~S  210 (536)
T KOG4648|consen  155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN-IELKKSLARINS  210 (536)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc-HHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999997 566666655544

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=5.3e-15  Score=143.14  Aligned_cols=242  Identities=26%  Similarity=0.371  Sum_probs=173.9

Q ss_pred             eEEEEEEEEEecCCCcEEEeccCCC---CCCCeEEEcCCCCchHHHHHH--HhcCCcCcE----EEEEeC--CCCccccC
Q 008780          291 LLCVHYKGMLLNEEKKVFYDTRVDN---DGQPLEFSSGEGLVPEGFEMC--VRLMLPGEI----ALVTCP--PDYAYDKF  359 (554)
Q Consensus       291 ~V~v~y~g~~~~~~g~~~~~t~~~~---~~~~~~f~lG~~~v~~g~~~~--l~~M~~GE~----~~~~i~--~~~~yg~~  359 (554)
                      ++++...|  +|++|+.||.|+...   +|+.++|    |+||.|.+.+  |...+..+.    +.|.|.  .++.-+..
T Consensus       110 lLSMAN~G--pNTNgSQFFITT~p~PHLdGkHVVF----GqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~~~  183 (372)
T KOG0546|consen  110 LLSMANRG--PNTNGSQFFITTVPTPHLDGKHVVF----GQVIKGKEVVREIENLETDEESKPLADVVISDCGELVKKSK  183 (372)
T ss_pred             hhhhhcCC--CCCCCcceEEeCCCCCCcCCceeEE----eeEeechhHHHHHhccccccCCCCccceEeccccccccccc
Confidence            56677777  778899999998764   5788888    6788887754  444545443    222221  11111100


Q ss_pred             -CCCCCC--CCCCeEEEEEEEccccc-CCCCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCC
Q 008780          360 -LRPANV--PEGAHIQWEIELLGFEK-PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD  435 (554)
Q Consensus       360 -g~~~~i--p~~~~l~~~ieL~~~~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~  435 (554)
                       .....+  +....-.++    ++.. ...+...+....+..++..++.|+..|++++|..|...|.++++++.. .+.+
T Consensus       184 ~~~~~~a~~~~~sgd~~~----d~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~-~s~~  258 (372)
T KOG0546|consen  184 VKEDAGASEPDETGDSYE----DYPKDDRSWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSE-QSRD  258 (372)
T ss_pred             ccccccCCCCCCCCCccc----ccccccccccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcc-cccc
Confidence             000001  111111111    0110 111223345667788899999999999999999999999999999875 2322


Q ss_pred             hh-H----HHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          436 DE-E----GKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       436 ~e-e----~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      .+ +    ...+..++..++.|++.|-++++.|..|+..|..+++.++...++|||++++++.+.++++|+++++.|...
T Consensus       259 ~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~  338 (372)
T KOG0546|consen  259 REKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK  338 (372)
T ss_pred             cccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence            11 1    233567778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcc
Q 008780          511 DKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKGCLT  546 (554)
Q Consensus       511 ~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f~  546 (554)
                      .|++ ..+.+++...+++.. +.++++  +.+.+||+
T Consensus       339 ~p~d-~~i~~~~~~~~~~~~~~~~~~~--~~~~k~~s  372 (372)
T KOG0546|consen  339 APND-KAIEEELENVRQKKKQYNRKQK--KALSKMFS  372 (372)
T ss_pred             Ccch-HHHHHHHHHhhhHHHHHHHHHH--HHHHhhcC
Confidence            9997 778888888877777 667777  88999884

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.54  E-value=1.3e-13  Score=141.39  Aligned_cols=117  Identities=21%  Similarity=0.378  Sum_probs=109.3

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..++.+|+.+|..++|..|+.+|++||+    +.|.+           ..+++++|.||+++++|++|+.++++|+.++
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~----~~P~~-----------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~   66 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAID----LDPNN-----------AELYADRAQANIKLGNFTEAVADANKAIELD   66 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34578899999999999999999999999    88887           6799999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      |.++.+|+++|.+|+.+|+|++|+..|+++++++|++ ..+...+..+..++.
T Consensus        67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~-~~~~~~l~~~~~kl~  118 (356)
T PLN03088         67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD-SRFTKLIKECDEKIA  118 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998 678888888877775

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=4.7e-14  Score=138.57  Aligned_cols=127  Identities=27%  Similarity=0.415  Sum_probs=114.2

Q ss_pred             hhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 008780          391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  470 (554)
Q Consensus       391 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  470 (554)
                      ..-.++..+.+++.||.+|+.|+|..|-++|..||.    ++|.+       .+..+.||.|+|.+..++|+..+|+..|
T Consensus       242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~----idP~n-------~~~naklY~nra~v~~rLgrl~eaisdc  310 (486)
T KOG0550|consen  242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN----IDPSN-------KKTNAKLYGNRALVNIRLGRLREAISDC  310 (486)
T ss_pred             HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc----CCccc-------cchhHHHHHHhHhhhcccCCchhhhhhh
Confidence            445577888999999999999999999999999999    99987       3456889999999999999999999999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       471 ~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      ++|+.+|+...|||.++|+||+.+++|++|.++|++|++++.+  ..+++.|.+++..++
T Consensus       311 ~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s--~e~r~~l~~A~~aLk  368 (486)
T KOG0550|consen  311 NEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD--CEIRRTLREAQLALK  368 (486)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999865  456777776666665

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.50  E-value=6.5e-13  Score=147.05  Aligned_cols=135  Identities=27%  Similarity=0.393  Sum_probs=118.0

Q ss_pred             CCCCCCeEEEEEEEcccccCCCCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHh
Q 008780          364 NVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFV  443 (554)
Q Consensus       364 ~ip~~~~l~~~ieL~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~  443 (554)
                      .+|+...+...+++..++. ...+.++.+++...+..++++|+.+|+.|+|++|+..|++|+.    +.|.         
T Consensus        94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~----~~p~---------  159 (615)
T TIGR00990        94 TAPKNAPVEPADELPEIDE-SSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIE----CKPD---------  159 (615)
T ss_pred             CCCCCCCCCccccccccch-hhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCc---------
Confidence            3556666666666655444 3457789999999999999999999999999999999999999    7774         


Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780          444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       444 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~  515 (554)
                         ...|.|+|.||.++++|++|+.+|+++|+++|++.++|+++|.+|..+|+|++|+.+|.+++.+++.+.
T Consensus       160 ---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~  228 (615)
T TIGR00990       160 ---PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN  228 (615)
T ss_pred             ---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence               357999999999999999999999999999999999999999999999999999999999988877653

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.49  E-value=4e-13  Score=123.02  Aligned_cols=82  Identities=23%  Similarity=0.302  Sum_probs=73.3

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (554)
Q Consensus        45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~  124 (554)
                      ++++++|+|+|++++.+|++|++|+.     ..|+.|.+|.++++++|+++|.+|.+|++..|.|||+.|||..      
T Consensus         3 I~~~~vV~l~Y~l~~~dG~v~dst~~-----~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~------   71 (196)
T PRK10737          3 VAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY------   71 (196)
T ss_pred             cCCCCEEEEEEEEEeCCCCEEEecCC-----CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCC------
Confidence            57899999999999999999999983     5799999999999999999999999999999999999999976      


Q ss_pred             CCCCCCCCceEEEEEEEee
Q 008780          125 PSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus       125 ~~~ip~~~~l~~~v~l~~~  143 (554)
                            +..++..|..-.+
T Consensus        72 ------d~~lV~~vpr~~F   84 (196)
T PRK10737         72 ------DENLVQRVPKDVF   84 (196)
T ss_pred             ------ChHHEEEecHHHC
Confidence                  4567776655544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.49  E-value=8.5e-13  Score=117.47  Aligned_cols=109  Identities=17%  Similarity=0.294  Sum_probs=100.1

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      +...|..++..|+|++|+..|++++.    ++|.+           ..+++++|.++.++|+|++|+..|.++++++|++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~   91 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVM----AQPWS-----------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASH   91 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            55789999999999999999999999    89988           7899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      +.+++++|.++..+|++++|+..|++|++++|++ ......+...
T Consensus        92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~-~~~~~~~~~~  135 (144)
T PRK15359         92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD-ASWSEIRQNA  135 (144)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHH
Confidence            9999999999999999999999999999999998 4455444433

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=3.9e-13  Score=128.80  Aligned_cols=104  Identities=30%  Similarity=0.442  Sum_probs=95.1

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .|+.+++.||.+|+.++|..|+.+|.++|.    ....|       ..+.+.+|+|+|+|++-+|+|..|+..|.+|+.+
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk----~kc~D-------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~  148 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLK----KKCAD-------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL  148 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHh----hcCCC-------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999999    55555       3456889999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      +|.+.||++|-|+|++.|.+|.+|..+.+..+.++
T Consensus       149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence            99999999999999999999888888877776654

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=1.1e-12  Score=116.23  Aligned_cols=83  Identities=27%  Similarity=0.436  Sum_probs=73.1

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (554)
Q Consensus        45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~  124 (554)
                      .++||.|+++|++++.||++||+|..    ...|+.|.+|.+++++||++||.+|.+|++..|.|||+.|||..      
T Consensus         3 i~k~~~V~i~Y~~~~~dg~v~Dtt~e----~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~------   72 (174)
T COG1047           3 IEKGDVVSLHYTLKVEDGEVVDTTDE----NYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY------   72 (174)
T ss_pred             ccCCCEEEEEEEEEecCCcEEEcccc----cCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCC------
Confidence            67899999999999999999999984    46799999999999999999999999999999999999999976      


Q ss_pred             CCCCCCCCceEEEEEEEee
Q 008780          125 PSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus       125 ~~~ip~~~~l~~~v~l~~~  143 (554)
                            +..++-.|.+-.+
T Consensus        73 ------~~~lvq~vp~~~F   85 (174)
T COG1047          73 ------DPDLVQRVPRDEF   85 (174)
T ss_pred             ------ChHHeEEecHHHh
Confidence                  4466555544444

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.47  E-value=4.3e-13  Score=119.78  Aligned_cols=72  Identities=21%  Similarity=0.304  Sum_probs=67.7

Q ss_pred             CCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCC
Q 008780          168 TPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM  239 (554)
Q Consensus       168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~  239 (554)
                      .++.|+.|++||++++.||++|+|+.. +.|+.|.+|.++++|||+++|.+|++|+++.|.|||+++||..++
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d~   76 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPSP   76 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence            478899999999999999999999874 799999999999999999999999999999999999999998654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=4.1e-13  Score=136.36  Aligned_cols=113  Identities=27%  Similarity=0.456  Sum_probs=106.1

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..++++||.+|..|+|+.|+.+|..|+.    ++|.+           ..+|.|++.||.++++|.+|+....+..+++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~----l~p~n-----------hvlySnrsaa~a~~~~~~~al~da~k~~~l~   66 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIM----LSPTN-----------HVLYSNRSAAYASLGSYEKALKDATKTRRLN   66 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHc----cCCCc-----------cchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            45678999999999999999999999999    89987           8899999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      |.++|+|.|+|.++..+|+|++|+..|.+.|+.+|+| ..+..-|....
T Consensus        67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n-~~L~~gl~~a~  114 (539)
T KOG0548|consen   67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSN-KQLKTGLAQAY  114 (539)
T ss_pred             CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCch-HHHHHhHHHhh
Confidence            9999999999999999999999999999999999998 56666666665

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.42  E-value=1.4e-12  Score=119.52  Aligned_cols=72  Identities=17%  Similarity=0.098  Sum_probs=68.1

Q ss_pred             CCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCC
Q 008780          169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP  240 (554)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~  240 (554)
                      ++.++.|+++|++++.||++++++....|+.|.+|.++++|+||++|.+|++|++.+|.|+|+.|||...+.
T Consensus         3 I~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~~   74 (196)
T PRK10737          3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDEN   74 (196)
T ss_pred             cCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence            578899999999999999999999888999999999999999999999999999999999999999987553

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=2.6e-12  Score=113.80  Aligned_cols=74  Identities=16%  Similarity=0.113  Sum_probs=69.3

Q ss_pred             CCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCC
Q 008780          168 TPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPV  241 (554)
Q Consensus       168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~  241 (554)
                      .+..|+.|+++|++++.||+++++|.. ..|+.|.+|.++++||||++|.+|.+|++.++.|||+.|||.+++..
T Consensus         2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~~l   76 (174)
T COG1047           2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDPDL   76 (174)
T ss_pred             cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCChHH
Confidence            367899999999999999999999987 89999999999999999999999999999999999999999976643

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=1.7e-12  Score=119.09  Aligned_cols=119  Identities=26%  Similarity=0.370  Sum_probs=105.9

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      ..+..+++.||.+|...+|..|+.+|.+||.    ++|..           +..+.|+|.||+++++|+.+...|.+|++
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~----~nP~~-----------~~Y~tnralchlk~~~~~~v~~dcrralq   72 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAIC----INPTV-----------ASYYTNRALCHLKLKHWEPVEEDCRRALQ   72 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHh----cCCCc-----------chhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence            3578999999999999999999999999999    88887           78899999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHH
Q 008780          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD----KSSEPDATAALSKLKKQR  529 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~----P~~~~~~~~~l~~l~~~~  529 (554)
                      ++|+.+|++|.+|++++....|++|+..+++|..+-    ++...++..+|...+.+.
T Consensus        73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~  130 (284)
T KOG4642|consen   73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKR  130 (284)
T ss_pred             cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCc
Confidence            999999999999999999999999999999997762    222346777777766543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.36  E-value=2.7e-11  Score=106.39  Aligned_cols=102  Identities=9%  Similarity=0.093  Sum_probs=96.5

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      +..+.+...|..++..|++++|...|+-.+.    ++|.+           ...|+|||.|+..+|+|.+|+..|.+|+.
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~----~Dp~~-----------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~   97 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTI----YDAWS-----------FDYWFRLGECCQAQKHWGEAIYAYGRAAQ   97 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3466788999999999999999999999999    88888           78999999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P  512 (554)
                      ++|+++.++++.|.|++.+|+.+.|++.|+.|+.+--
T Consensus        98 L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363         98 IKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999863

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.35  E-value=2.7e-11  Score=106.56  Aligned_cols=115  Identities=19%  Similarity=0.371  Sum_probs=103.3

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+......|..++..+++.+|+..|++++.    ..|.+           ..++.++|.|+.+++++++|+..+++++..
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAA----YDPYN-----------SRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345678999999999999999999999999    78877           679999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      +|.++..++.+|.++..+|++++|+..|+++++++|++ .........+..
T Consensus        81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~  130 (135)
T TIGR02552        81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN-PEYSELKERAEA  130 (135)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chHHHHHHHHHH
Confidence            99999999999999999999999999999999999987 444555554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.28  E-value=1.2e-11  Score=126.92  Aligned_cols=124  Identities=22%  Similarity=0.235  Sum_probs=61.6

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhH--------------------HH---HHhhhHHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE--------------------GK---VFVGKRNLLHLNVA  454 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee--------------------~~---~~~~~~~~~~~nla  454 (554)
                      +.++.+.||.+-..+.|++|+.+|.+|+.    +.|....-                    .+   .++.-...+|+|+|
T Consensus       252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~----lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nla  327 (966)
T KOG4626|consen  252 LDAYINLGNVYKEARIFDRAVSCYLRALN----LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLA  327 (966)
T ss_pred             hHHHhhHHHHHHHHhcchHHHHHHHHHHh----cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHH
Confidence            44555666666666666666666666666    55544100                    00   00000133455555


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      .++...|+..+|.++|++||.+.|+++.+++++|.++.+.+.+++|...|.+|++..|.- .++..-|..+.
T Consensus       328 nALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~-aaa~nNLa~i~  398 (966)
T KOG4626|consen  328 NALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF-AAAHNNLASIY  398 (966)
T ss_pred             HHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh-hhhhhhHHHHH
Confidence            555555555555555555555555555555555555555555555555555555555543 33333344333

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.26  E-value=1.9e-10  Score=115.41  Aligned_cols=104  Identities=22%  Similarity=0.251  Sum_probs=99.8

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      ..+..+.++|..+...|++.+|+..|++|++    ++|.+           ..+|+++|.++..+|+|++|+..++++++
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~  126 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALA----LRPDM-----------ADAYNYLGIYLTQAGNFDAAYEAFDSVLE  126 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3467799999999999999999999999999    89987           78999999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ++|++..+++++|.++...|++++|+.+|+++++++|++
T Consensus       127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~  165 (296)
T PRK11189        127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND  165 (296)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999998

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.25  E-value=1.1e-11  Score=125.22  Aligned_cols=118  Identities=30%  Similarity=0.463  Sum_probs=111.5

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .|..++++++.+|+.+.|+.|+..|.+||+    ++|+.           +..+.|+|.++++.++|..|+..+.+|+++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~----ldpnc-----------a~~~anRa~a~lK~e~~~~Al~Da~kaie~   67 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIE----LDPNC-----------AIYFANRALAHLKVESFGGALHDALKAIEL   67 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHh----cCCcc-----------eeeechhhhhheeechhhhHHHHHHhhhhc
Confidence            467889999999999999999999999999    88887           778999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      +|...|+|+|+|.+++.+++|.+|+.+|++...+.|++ +.+.+.+.++.....
T Consensus        68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd-~~~~r~~~Ec~~~vs  120 (476)
T KOG0376|consen   68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPND-PDATRKIDECNKIVS  120 (476)
T ss_pred             CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCc-HHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999997 788888888887776

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.24  E-value=1.3e-10  Score=109.18  Aligned_cols=114  Identities=14%  Similarity=0.253  Sum_probs=100.5

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHH-HHccC--HHHHHHHHHHH
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL-LKLGE--CRKSIEACNKV  473 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~-~kl~~--~~~A~~~~~~a  473 (554)
                      .+..+...|..+...|+++.|+..|++|++    +.|.+           ..++.++|.|+ ...|+  +.+|...++++
T Consensus        72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~----l~P~~-----------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a  136 (198)
T PRK10370         72 NSEQWALLGEYYLWRNDYDNALLAYRQALQ----LRGEN-----------AELYAALATVLYYQAGQHMTPQTREMIDKA  136 (198)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            466788999999999999999999999999    89988           78999999985 67787  59999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       474 l~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ++.+|+++.+++.+|.+++.+|+|++|+..|+++++++|.+. .-...+..+.
T Consensus       137 l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~-~r~~~i~~i~  188 (198)
T PRK10370        137 LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV-NRTQLVESIN  188 (198)
T ss_pred             HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc-cHHHHHHHHH
Confidence            999999999999999999999999999999999999999873 3333334433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.20  E-value=1.2e-10  Score=119.78  Aligned_cols=133  Identities=15%  Similarity=0.166  Sum_probs=105.9

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  478 (554)
                      .++.+.||++-..|+..+|..+|.+||.    +.|..           +...+|||..|..++.+++|...|.++|+..|
T Consensus       321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~----l~p~h-----------adam~NLgni~~E~~~~e~A~~ly~~al~v~p  385 (966)
T KOG4626|consen  321 DAYNNLANALKDKGSVTEAVDCYNKALR----LCPNH-----------ADAMNNLGNIYREQGKIEEATRLYLKALEVFP  385 (966)
T ss_pred             HHHhHHHHHHHhccchHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHhccchHHHHHHHHHHhhCh
Confidence            4556777777777777777777777777    56655           67899999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       479 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      +.+.++.++|.+|.+.|++++|+.+|+.|+++.|.- .++..-+....+.+..-..+.  .+|.+...-.|
T Consensus       386 ~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f-Ada~~NmGnt~ke~g~v~~A~--q~y~rAI~~nP  453 (966)
T KOG4626|consen  386 EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF-ADALSNMGNTYKEMGDVSAAI--QCYTRAIQINP  453 (966)
T ss_pred             hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH-HHHHHhcchHHHHhhhHHHHH--HHHHHHHhcCc
Confidence            999999999999999999999999999999999986 445544555545554333343  67877655443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.18  E-value=8.7e-11  Score=90.37  Aligned_cols=66  Identities=32%  Similarity=0.605  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDK  512 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~-~~~~A~~~~~~al~l~P  512 (554)
                      +..+.++|.+++.+++|++|+.+++++++++|+++.+|+++|.++..++ ++++|+.+|++|++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            5689999999999999999999999999999999999999999999999 79999999999999998

...

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.17  E-value=5.4e-10  Score=123.85  Aligned_cols=103  Identities=25%  Similarity=0.324  Sum_probs=72.8

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+..+|..++..|++++|+..|++++.    ++|..           ...++++|.++..+++|++|+..+++++++
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~----l~P~~-----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~  394 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIE----LDPRV-----------TQSYIKRASMNLELGDPDKAEEDFDKALKL  394 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            455677888888899999999999999998    77765           445666666666666666666666666666


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +|+++.+|+++|.+++.+|++++|+.+|+++++++|++
T Consensus       395 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~  432 (615)
T TIGR00990       395 NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF  432 (615)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence            66666666666666666666666666666666666655

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.15  E-value=2.4e-10  Score=110.15  Aligned_cols=152  Identities=20%  Similarity=0.317  Sum_probs=125.9

Q ss_pred             ChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHH
Q 008780          390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA  469 (554)
Q Consensus       390 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  469 (554)
                      ++-..+.......+.+......++|.++++.+++.++    ..|...       ..+...+--++.|+..-+++-+|+..
T Consensus       261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk----~ep~~~-------~ir~~~~r~~c~C~~~d~~~~eAiqq  329 (504)
T KOG0624|consen  261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK----NEPEET-------MIRYNGFRVLCTCYREDEQFGEAIQQ  329 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----cCCccc-------ceeeeeeheeeecccccCCHHHHHHH
Confidence            4566777788888889999999999999999999999    666531       12233455678999999999999999


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH---------------HHH
Q 008780          470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQV---------------KLK  534 (554)
Q Consensus       470 ~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~---------------~~~  534 (554)
                      |.++|.++|+++.+|..|+.||+.-..|+.|+.+|++|++++++| ..++..+...++...+               ..+
T Consensus       330 C~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn-~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsK  408 (504)
T KOG0624|consen  330 CKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN-TRAREGLERAKRLKKQSGKRDYYKILGVKRNASK  408 (504)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHHHHhccchHHHHhhhcccccH
Confidence            999999999999999999999999999999999999999999998 6788888777665541               124


Q ss_pred             HHHHHHHHhhccc-cccccC
Q 008780          535 VRLENSLKGCLTR-SLGKFL  553 (554)
Q Consensus       535 ~~~~~~y~~~f~~-~~~~~~  553 (554)
                      +.+-++|+||-.+ +|++|.
T Consensus       409 qEI~KAYRKlAqkWHPDNFq  428 (504)
T KOG0624|consen  409 QEITKAYRKLAQKWHPDNFQ  428 (504)
T ss_pred             HHHHHHHHHHHHhcCCcccc
Confidence            5566889988776 788875

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.10  E-value=1.9e-09  Score=92.06  Aligned_cols=110  Identities=20%  Similarity=0.260  Sum_probs=95.7

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  478 (554)
                      ..+...|..+++.|+|.+|+..|.+++.    ..|.+.        ....+++++|.++.+.++|++|+..+++++..+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p   70 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLK----KYPKST--------YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP   70 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcc--------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence            4567899999999999999999999998    555441        1145789999999999999999999999999998


Q ss_pred             CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008780          479 AH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA  521 (554)
Q Consensus       479 ~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~  521 (554)
                      ++   +.+++.+|.++..++++++|+..|+++++..|++ ..+...
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~  115 (119)
T TIGR02795        71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS-SAAKLA  115 (119)
T ss_pred             CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC-hhHHHH
Confidence            85   6789999999999999999999999999999998 444433

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.07  E-value=3.8e-09  Score=97.11  Aligned_cols=110  Identities=21%  Similarity=0.344  Sum_probs=96.4

Q ss_pred             hhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008780          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (554)
Q Consensus       393 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  472 (554)
                      .....+..+...|..++..|++++|+.+|++++.    ..+...+        ...++.++|.++.++|+|++|+.++.+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~   97 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALK----LEEDPND--------RSYILYNMGIIYASNGEHDKALEYYHQ   97 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----Hhhccch--------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3556788899999999999999999999999998    4443211        146899999999999999999999999


Q ss_pred             HHhhCCCChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 008780          473 VLDANPAHVKGLYRRGMAYMALGE--------------FEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       473 al~~~p~~~ka~~~~g~a~~~l~~--------------~~~A~~~~~~al~l~P~~  514 (554)
                      ++.++|.+..+++.+|.++..+++              +++|++.+++++.++|++
T Consensus        98 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603         98 ALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            999999999999999999999988              678888888888889886

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.04  E-value=2.6e-09  Score=103.15  Aligned_cols=115  Identities=23%  Similarity=0.413  Sum_probs=104.1

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      ..++.+.+.|+.++.++++..|+..|..|++    .+|.+           ..+++.+|.+|+.+|+-.-|+..+.++|+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~-----------Y~aifrRaT~yLAmGksk~al~Dl~rVle  100 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNN-----------YQAIFRRATVYLAMGKSKAALQDLSRVLE  100 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchh-----------HHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence            4577889999999999999999999999999    89987           78899999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      +.|+..-|...||.+++.+|++++|.++|+++|..+|++. .......++.
T Consensus       101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~-~~~eaqskl~  150 (504)
T KOG0624|consen  101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG-LVLEAQSKLA  150 (504)
T ss_pred             cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc-hhHHHHHHHH
Confidence            9999999999999999999999999999999999999873 3333334443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.03  E-value=6e-09  Score=119.06  Aligned_cols=128  Identities=10%  Similarity=0.081  Sum_probs=94.5

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  478 (554)
                      ..+...|..+.+.|++++|+..|++++.    +.|.+           ..+++|+|.++..+|++++|+..+.++++++|
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~----l~Pd~-----------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P  674 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALE----LEPNN-----------SNYQAALGYALWDSGDIAQSREMLERAHKGLP  674 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            3456667777777777777777777777    77776           56888888888888888888888888888888


Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008780          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGC  544 (554)
Q Consensus       479 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~  544 (554)
                      +++.+++++|.++..+|++++|+..|++|++++|++ ..+......+..+...-+...  +.|+..
T Consensus       675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~-a~i~~~~g~~~~~~~~~~~a~--~~~~r~  737 (987)
T PRK09782        675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ-ALITPLTPEQNQQRFNFRRLH--EEVGRR  737 (987)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-chhhhhhhHHHHHHHHHHHHH--HHHHHH
Confidence            888888888888888888888888888888888876 455555555544443223332  445444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.01  E-value=6.9e-09  Score=97.44  Aligned_cols=122  Identities=11%  Similarity=0.056  Sum_probs=105.0

Q ss_pred             hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008780          410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  489 (554)
Q Consensus       410 ~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~  489 (554)
                      ..++.++++..|+++++    .+|.+           ...|.++|.+|..++++++|+..++++++++|+++.+++.+|.
T Consensus        51 ~~~~~~~~i~~l~~~L~----~~P~~-----------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~  115 (198)
T PRK10370         51 SQQTPEAQLQALQDKIR----ANPQN-----------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT  115 (198)
T ss_pred             CchhHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            46778899999999999    88988           7899999999999999999999999999999999999999999


Q ss_pred             HH-HHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780          490 AY-MALGE--FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       490 a~-~~l~~--~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      ++ ...|+  +++|+..|+++++++|++ ..+...|..........+++.  ..|++++...|
T Consensus       116 aL~~~~g~~~~~~A~~~l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai--~~~~~aL~l~~  175 (198)
T PRK10370        116 VLYYQAGQHMTPQTREMIDKALALDANE-VTALMLLASDAFMQADYAQAI--ELWQKVLDLNS  175 (198)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHH--HHHHHHHhhCC
Confidence            86 67787  599999999999999998 677777777766665455555  78888876543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.01  E-value=5e-09  Score=115.30  Aligned_cols=134  Identities=9%  Similarity=0.088  Sum_probs=115.5

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      ..+..+...|....+.|++++|...++.+++    +.|++           ..++.++|.++.+++++++|+..|+++|.
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~----~~Pd~-----------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~  148 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ----RFPDS-----------SEAFILMLRGVKRQQGIEAGRAEIELYFS  148 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hCCCc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence            3467788999999999999999999999999    89988           78999999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008780          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTR  547 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~  547 (554)
                      .+|+++.+++.+|.++..+|+|++|++.|++++..+|++ ..+.-.+..+-+.....+.+.  .+|++.+..
T Consensus       149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-~~~~~~~a~~l~~~G~~~~A~--~~~~~a~~~  217 (694)
T PRK15179        149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-ENGYVGWAQSLTRRGALWRAR--DVLQAGLDA  217 (694)
T ss_pred             cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHH--HHHHHHHHh
Confidence            999999999999999999999999999999999988876 555555555544444445555  677777654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.01  E-value=1.1e-09  Score=87.76  Aligned_cols=83  Identities=29%  Similarity=0.514  Sum_probs=72.4

Q ss_pred             cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (554)
Q Consensus       411 ~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  490 (554)
                      +++|+.|+..|++++.    ..|.+.         ....++++|.||+++++|++|+..+++ +..++.+..+++.+|+|
T Consensus         2 ~~~y~~Ai~~~~k~~~----~~~~~~---------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~   67 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLE----LDPTNP---------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC   67 (84)
T ss_dssp             TT-HHHHHHHHHHHHH----HHCGTH---------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHH----HCCCCh---------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence            6899999999999999    555331         146788899999999999999999999 88999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHH
Q 008780          491 YMALGEFEEAQRDFEMM  507 (554)
Q Consensus       491 ~~~l~~~~~A~~~~~~a  507 (554)
                      +..+++|++|+..|++|
T Consensus        68 ~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   68 LLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHTT-HHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHhcC
Confidence            99999999999999876

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.00  E-value=3.3e-09  Score=94.36  Aligned_cols=113  Identities=14%  Similarity=0.165  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 008780          418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF  497 (554)
Q Consensus       418 ~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~  497 (554)
                      ...|++|++    ++|.              .+.++|.++..+|+|++|+.+|++++.++|.+..+|+.+|.++..+|++
T Consensus        13 ~~~~~~al~----~~p~--------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~   74 (144)
T PRK15359         13 EDILKQLLS----VDPE--------------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY   74 (144)
T ss_pred             HHHHHHHHH----cCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence            456788888    6653              2567899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008780          498 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLGK  551 (554)
Q Consensus       498 ~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~~  551 (554)
                      ++|+..|++|+.++|++ ..+...+..+.......+.+.  ..|.+.....|+.
T Consensus        75 ~~A~~~y~~Al~l~p~~-~~a~~~lg~~l~~~g~~~eAi--~~~~~Al~~~p~~  125 (144)
T PRK15359         75 TTAINFYGHALMLDASH-PEPVYQTGVCLKMMGEPGLAR--EAFQTAIKMSYAD  125 (144)
T ss_pred             HHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHcCCHHHHH--HHHHHHHHhCCCC
Confidence            99999999999999998 667777776666555444555  6787777665543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.00  E-value=1.3e-08  Score=93.11  Aligned_cols=114  Identities=19%  Similarity=0.221  Sum_probs=94.4

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      ...+..+...|..++..++|++|+..|++|+.    +.+...        ....++.|+|.++..++++++|+..|.+++
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----l~~~~~--------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al   99 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMR----LEIDPY--------DRSYILYNIGLIHTSNGEHTKALEYYFQAL   99 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----ccccch--------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44788889999999999999999999999998    444321        124589999999999999999999999999


Q ss_pred             hhCCCChHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCChHHHHH
Q 008780          475 DANPAHVKGLYRRGMAYM-------ALGEFE-------EAQRDFEMMMKVDKSSEPDATA  520 (554)
Q Consensus       475 ~~~p~~~ka~~~~g~a~~-------~l~~~~-------~A~~~~~~al~l~P~~~~~~~~  520 (554)
                      .++|.+..++.++|.++.       .+|+++       +|+..|++++.++|.+...+..
T Consensus       100 ~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~  159 (168)
T CHL00033        100 ERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQN  159 (168)
T ss_pred             HhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence            999999999999999999       777776       5566666778889876443333

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.00  E-value=1.1e-09  Score=114.41  Aligned_cols=113  Identities=16%  Similarity=0.163  Sum_probs=78.1

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCCh-------------hHHHH-Hh---------hhHHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD-------------EEGKV-FV---------GKRNLLHLNVA  454 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~-------------ee~~~-~~---------~~~~~~~~nla  454 (554)
                      .+.|...||.+--+++++.|+++|++|+.    ++|...             ||.+. ..         .-...+|+.+|
T Consensus       421 PesWca~GNcfSLQkdh~~Aik~f~RAiQ----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG  496 (638)
T KOG1126|consen  421 PESWCALGNCFSLQKDHDTAIKCFKRAIQ----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG  496 (638)
T ss_pred             cHHHHHhcchhhhhhHHHHHHHHHHHhhc----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence            56788999999999999999999999999    777541             11111 00         01123566666


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      .+|+|+++++.|.-++++|++++|.|.-.+...|..+.++++.++|+..|++|+.+||.|
T Consensus       497 ~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn  556 (638)
T KOG1126|consen  497 TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN  556 (638)
T ss_pred             hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence            667777777777777777777777666666666777777777777777777777766666

>PRK12370 invasion protein regulator; Provisional

Probab=98.99  E-value=8.1e-09  Score=112.73  Aligned_cols=90  Identities=16%  Similarity=0.076  Sum_probs=68.3

Q ss_pred             hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008780          410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  489 (554)
Q Consensus       410 ~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~  489 (554)
                      ..+++.+|+..+++|++    ++|.+           ..++..+|.++..++++++|+..++++++++|+++.+|+.+|.
T Consensus       316 ~~~~~~~A~~~~~~Al~----ldP~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  380 (553)
T PRK12370        316 KQNAMIKAKEHAIKATE----LDHNN-----------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGW  380 (553)
T ss_pred             cchHHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            55667777777777777    77776           5667777777777777777777777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          490 AYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       490 a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ++..+|++++|+..|++|++++|.+
T Consensus       381 ~l~~~G~~~eAi~~~~~Al~l~P~~  405 (553)
T PRK12370        381 NLFMAGQLEEALQTINECLKLDPTR  405 (553)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            7777777777777777777777775

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=1.2e-08  Score=102.29  Aligned_cols=132  Identities=14%  Similarity=0.166  Sum_probs=107.0

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+.-.|.++...++-..|+..|++|++    ++|.|           ..+|+.+|.+|--|+...=|+-++++|++.
T Consensus       363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd----i~p~D-----------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~  427 (559)
T KOG1155|consen  363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVD----INPRD-----------YRAWYGLGQAYEIMKMHFYALYYFQKALEL  427 (559)
T ss_pred             hhHHHHHhhHHHHHhcccHHHHHHHHHHHh----cCchh-----------HHHHhhhhHHHHHhcchHHHHHHHHHHHhc
Confidence            455667788888888888899999999998    88877           788999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLT  546 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~  546 (554)
                      .|++...|..+|.||..+++.++|+++|++|+...-.+ ..+-..|.+|.++.+...++.  .+|.+...
T Consensus       428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte-~~~l~~LakLye~l~d~~eAa--~~yek~v~  494 (559)
T KOG1155|consen  428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE-GSALVRLAKLYEELKDLNEAA--QYYEKYVE  494 (559)
T ss_pred             CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHhHHHHH--HHHHHHHH
Confidence            99999999999999999999999999999999887654 456666777777776344443  56666554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=6.7e-09  Score=104.65  Aligned_cols=105  Identities=25%  Similarity=0.346  Sum_probs=99.8

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      -..|..+.-+|..+|-.|++..|...++++|.    ++|..           ..+|..+|..|+...+-.+-..++++|.
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~----l~~~~-----------~~lyI~~a~~y~d~~~~~~~~~~F~~A~  387 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK----LDPAF-----------NSLYIKRAAAYADENQSEKMWKDFNKAE  387 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh----cCccc-----------chHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence            44588899999999999999999999999999    88877           6679999999999999999999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      .+||.|+..||.||+.++-+++|++|+++|++|.+|+|+|
T Consensus       388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~  427 (606)
T KOG0547|consen  388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN  427 (606)
T ss_pred             hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh
Confidence            9999999999999999999999999999999999999987

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=7.1e-09  Score=103.91  Aligned_cols=125  Identities=16%  Similarity=0.194  Sum_probs=115.1

Q ss_pred             HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChH
Q 008780          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (554)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k  482 (554)
                      -.||-+--+++.+.|+..|++||+    ++|..           ..+|.-+|.=|+.|++-..|+..|++|++++|.+-+
T Consensus       335 iIaNYYSlr~eHEKAv~YFkRALk----LNp~~-----------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR  399 (559)
T KOG1155|consen  335 IIANYYSLRSEHEKAVMYFKRALK----LNPKY-----------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR  399 (559)
T ss_pred             eehhHHHHHHhHHHHHHHHHHHHh----cCcch-----------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH
Confidence            468888889999999999999999    99987           789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008780          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCL  545 (554)
Q Consensus       483 a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f  545 (554)
                      |||-+|++|..++-..=|+-.|++|+.+-|++ +.++..|.++..+....+.+.  +.|++..
T Consensus       400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD-sRlw~aLG~CY~kl~~~~eAi--KCykrai  459 (559)
T KOG1155|consen  400 AWYGLGQAYEIMKMHFYALYYFQKALELKPND-SRLWVALGECYEKLNRLEEAI--KCYKRAI  459 (559)
T ss_pred             HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHhccHHHHH--HHHHHHH
Confidence            99999999999999999999999999999998 789999999998887555555  7888764

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.97  E-value=7.3e-09  Score=83.18  Aligned_cols=99  Identities=32%  Similarity=0.580  Sum_probs=90.4

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  479 (554)
                      .+...|..++..+++.+|+..++++++    ..|.+           ..++.++|.|+...+++++|+..+++++...|.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   66 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALE----LDPDN-----------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPD   66 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHh----cCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            356788999999999999999999998    66665           467899999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                      +..+++.+|.++...++++.|...+.++++++|+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999998874

>PRK15331 chaperone protein SicA; Provisional

Probab=98.97  E-value=1.5e-08  Score=89.49  Aligned_cols=102  Identities=9%  Similarity=0.149  Sum_probs=93.9

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      ..+.....|-.+|.+|+|++|...|+-...    .++.+           ...++.||.|+..+++|++|+..|..+..+
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~----~d~~n-----------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l  100 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCI----YDFYN-----------PDYTMGLAAVCQLKKQFQKACDLYAVAFTL  100 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            456778899999999999999999998777    77877           668899999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +++++...|+.|+|++.+++.+.|+.+|..|+. .|.+
T Consensus       101 ~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~  137 (165)
T PRK15331        101 LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTED  137 (165)
T ss_pred             ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence            999999999999999999999999999999998 4554

>PRK12370 invasion protein regulator; Provisional

Probab=98.95  E-value=1.2e-08  Score=111.27  Aligned_cols=119  Identities=10%  Similarity=0.085  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008780          414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA  493 (554)
Q Consensus       414 ~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~  493 (554)
                      +++|+..|++|++    ++|.+           ..+++++|.++..+|++++|+.+++++++++|.++.+++.++.+++.
T Consensus       354 ~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~  418 (553)
T PRK12370        354 YIVGSLLFKQANL----LSPIS-----------ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY  418 (553)
T ss_pred             HHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence            4678888888888    88888           67899999999999999999999999999999999888888888999


Q ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          494 LGEFEEAQRDFEMMMKVD-KSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       494 l~~~~~A~~~~~~al~l~-P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      +|++++|+..++++++.+ |++ ..+...+..+.......++++  ..+.++....+.
T Consensus       419 ~g~~eeA~~~~~~~l~~~~p~~-~~~~~~la~~l~~~G~~~eA~--~~~~~~~~~~~~  473 (553)
T PRK12370        419 HTGIDDAIRLGDELRSQHLQDN-PILLSMQVMFLSLKGKHELAR--KLTKEISTQEIT  473 (553)
T ss_pred             ccCHHHHHHHHHHHHHhccccC-HHHHHHHHHHHHhCCCHHHHH--HHHHHhhhccch
Confidence            999999999999999886 555 556666666655544444555  567777665544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.94  E-value=1.9e-09  Score=82.79  Aligned_cols=67  Identities=28%  Similarity=0.496  Sum_probs=63.1

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLD  475 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~  475 (554)
                      .|..+...|..++..++|++|+..|++|++    ++|.+           ..+++|+|.||.+++ ++.+|+.+++++++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~----~~p~~-----------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE----LDPNN-----------AEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH----HSTTH-----------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            367889999999999999999999999999    78877           789999999999999 79999999999999


Q ss_pred             hCC
Q 008780          476 ANP  478 (554)
Q Consensus       476 ~~p  478 (554)
                      ++|
T Consensus        67 l~P   69 (69)
T PF13414_consen   67 LDP   69 (69)
T ss_dssp             HST
T ss_pred             cCc
Confidence            998

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.93  E-value=3.8e-09  Score=80.10  Aligned_cols=64  Identities=22%  Similarity=0.416  Sum_probs=60.2

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       451 ~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            4688999999999999999999999999999999999999999999999999999999999987

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.93  E-value=1.2e-09  Score=105.82  Aligned_cols=120  Identities=28%  Similarity=0.458  Sum_probs=109.5

Q ss_pred             ChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHH
Q 008780          390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA  469 (554)
Q Consensus       390 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  469 (554)
                      ..++.++.|...+-.+..++..|.++.|+..|.+|+.    ++|..           ..+|.+++.++++++.+..|++.
T Consensus       106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~----lnp~~-----------a~l~~kr~sv~lkl~kp~~airD  170 (377)
T KOG1308|consen  106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIE----LNPPL-----------AILYAKRASVFLKLKKPNAAIRD  170 (377)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccc----cCCch-----------hhhcccccceeeeccCCchhhhh
Confidence            3578889999999999999999999999999999999    88887           78999999999999999999999


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       470 ~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      |..|++++|+.++.|-.+|.++..+|+|++|..+|..|++++-+  +++.+.|+.+.
T Consensus       171 ~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d--E~~~a~lKeV~  225 (377)
T KOG1308|consen  171 CDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD--EANSATLKEVF  225 (377)
T ss_pred             hhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc--HHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999864  34555555544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.92  E-value=2.3e-08  Score=114.27  Aligned_cols=123  Identities=13%  Similarity=0.114  Sum_probs=100.8

Q ss_pred             hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008780          410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  489 (554)
Q Consensus       410 ~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~  489 (554)
                      ..|++++|+..|++|+.    +.|.            ..++.|+|.++.++|++++|+..+.++++++|+++.+++++|.
T Consensus       588 ~~Gr~~eAl~~~~~AL~----l~P~------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~  651 (987)
T PRK09782        588 IPGQPELALNDLTRSLN----IAPS------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY  651 (987)
T ss_pred             hCCCHHHHHHHHHHHHH----hCCC------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            33666666666666666    5552            4678999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008780          490 AYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLGK  551 (554)
Q Consensus       490 a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~~  551 (554)
                      ++..+|++++|+..|++|++++|++ ..+...+..+.......+.+.  ..|++.+...|+.
T Consensus       652 aL~~~G~~eeAi~~l~~AL~l~P~~-~~a~~nLA~al~~lGd~~eA~--~~l~~Al~l~P~~  710 (987)
T PRK09782        652 ALWDSGDIAQSREMLERAHKGLPDD-PALIRQLAYVNQRLDDMAATQ--HYARLVIDDIDNQ  710 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHH--HHHHHHHhcCCCC
Confidence            9999999999999999999999998 677777777766665444444  6788887766654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.90  E-value=5.6e-08  Score=92.63  Aligned_cols=124  Identities=19%  Similarity=0.350  Sum_probs=63.8

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhH----------------H-HHH------hhhHHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE----------------G-KVF------VGKRNLLHLNVA  454 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee----------------~-~~~------~~~~~~~~~nla  454 (554)
                      +..+...|..++..|++++|+..|++++.    ..|.+..-                . +.+      ......++.+++
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  106 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALE----HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG  106 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            45555666666666666666666666665    34443100                0 000      000023455555


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          455 ACLLKLGECRKSIEACNKVLDAN--PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~~--p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      .++..+|++++|+..+.+++...  +.....++.+|.++...|++++|...|.++++.+|++ ..+...+..+.
T Consensus       107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~  179 (234)
T TIGR02521       107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR-PESLLELAELY  179 (234)
T ss_pred             HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-hHHHHHHHHHH
Confidence            55555666666666666555532  3344555556666666666666666666666666654 33333333333

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.89  E-value=8.5e-08  Score=91.35  Aligned_cols=117  Identities=17%  Similarity=0.255  Sum_probs=90.4

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  479 (554)
                      .+...|..++..|++++|+..|++++.    .....         .....+.++|.|+..++++.+|+..+.+++..+|.
T Consensus       101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  167 (234)
T TIGR02521       101 VLNNYGTFLCQQGKYEQAMQQFEQAIE----DPLYP---------QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ  167 (234)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHh----ccccc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            344556666666677777777776665    21110         11457889999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      +..+++.+|.++...|++++|+..+++++++.|.+ ......+..+.....
T Consensus       168 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  217 (234)
T TIGR02521       168 RPESLLELAELYYLRGQYKDARAYLERYQQTYNQT-AESLWLGIRIARALG  217 (234)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999998876 444444545544444

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.89  E-value=2.1e-08  Score=87.99  Aligned_cols=115  Identities=12%  Similarity=0.105  Sum_probs=95.2

Q ss_pred             HHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Q 008780          419 AKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE  498 (554)
Q Consensus       419 ~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~  498 (554)
                      ..|++++.    .+|.+           .....++|.++.+.+++.+|+..+++++..+|.+..+++++|.++..+++++
T Consensus         4 ~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~   68 (135)
T TIGR02552         4 ATLKDLLG----LDSEQ-----------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE   68 (135)
T ss_pred             hhHHHHHc----CChhh-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            45778888    77776           5678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008780          499 EAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLGK  551 (554)
Q Consensus       499 ~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~~  551 (554)
                      +|+..|++++.++|.+ ......+..+.......+++.  +.|++.+...|+.
T Consensus        69 ~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~--~~~~~al~~~p~~  118 (135)
T TIGR02552        69 EAIDAYALAAALDPDD-PRPYFHAAECLLALGEPESAL--KALDLAIEICGEN  118 (135)
T ss_pred             HHHHHHHHHHhcCCCC-hHHHHHHHHHHHHcCCHHHHH--HHHHHHHHhcccc
Confidence            9999999999999998 666666666666555334443  5677666655443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.89  E-value=7.6e-08  Score=93.18  Aligned_cols=113  Identities=20%  Similarity=0.288  Sum_probs=98.5

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..++..|+|+.|+..|++++.    ..|.+..        ...+++++|.+|.++++|++|+..++++++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----~~p~~~~--------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~   99 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALES----RYPFSPY--------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRL   99 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCchh--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            466889999999999999999999999999    7776521        2357899999999999999999999999999


Q ss_pred             CCCChH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008780          477 NPAHVK---GLYRRGMAYMAL--------GEFEEAQRDFEMMMKVDKSSEPDATAAL  522 (554)
Q Consensus       477 ~p~~~k---a~~~~g~a~~~l--------~~~~~A~~~~~~al~l~P~~~~~~~~~l  522 (554)
                      .|+++.   +++.+|.++..+        +++++|+..|++++..+|++ ..+...+
T Consensus       100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~  155 (235)
T TIGR03302       100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAK  155 (235)
T ss_pred             CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHH
Confidence            998877   799999999987        89999999999999999998 4344333

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.88  E-value=3.3e-08  Score=109.92  Aligned_cols=96  Identities=18%  Similarity=0.164  Sum_probs=54.6

Q ss_pred             hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHH----HHHHHHHHHhhCCC
Q 008780          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK----SIEACNKVLDANPA  479 (554)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~----A~~~~~~al~~~p~  479 (554)
                      .+..++..|++++|+..|++++.    ..|.+           ..+++++|.++..+|++++    |+..|+++++++|+
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~----~~p~~-----------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~  282 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALA----RGLDG-----------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD  282 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence            35566677777777777777776    55554           3444555555555555543    45555555555555


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ++.++..+|.++..+|++++|+..|+++++++|++
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~  317 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL  317 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            55555555555555555555555555555555554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.87  E-value=3.8e-08  Score=109.47  Aligned_cols=135  Identities=14%  Similarity=0.157  Sum_probs=108.7

Q ss_pred             HHHHHHhhhhhhhcCCHHH----HHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFEL----AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~----A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (554)
                      +..+...|..++..|++++    |+..|++++.    +.|.+           ..++.++|.++.++|++++|+..++++
T Consensus       246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~l~~~g~~~eA~~~l~~a  310 (656)
T PRK15174        246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ----FNSDN-----------VRIVTLYADALIRTGQNEKAIPLLQQS  310 (656)
T ss_pred             HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4456678999999999985    8999999999    88887           678999999999999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       474 l~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      ++++|+++.+++.+|.++..+|++++|+..|++++..+|++ ......+..+.......+.+.  ..|++.....|+
T Consensus       311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~-~~~~~~~a~al~~~G~~deA~--~~l~~al~~~P~  384 (656)
T PRK15174        311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT-SKWNRYAAAALLQAGKTSEAE--SVFEHYIQARAS  384 (656)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHCCCHHHHH--HHHHHHHHhChh
Confidence            99999999999999999999999999999999999999986 333332233222222334444  667777666554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.86  E-value=6e-08  Score=89.45  Aligned_cols=116  Identities=16%  Similarity=0.208  Sum_probs=69.4

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhH--------------------HHH---HhhhHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE--------------------GKV---FVGKRNLLHL  451 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee--------------------~~~---~~~~~~~~~~  451 (554)
                      -..+....++|-.++.+|++..|....++||+    .+|.+...                    .++   +..-...+++
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~----~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLN  107 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALE----HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLN  107 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhh
Confidence            34577788889999999999999999999998    77766210                    000   0011123444


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          452 NVAACLLKLGECRKSIEACNKVLDA--NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       452 nla~~~~kl~~~~~A~~~~~~al~~--~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      |-|..+..+|+|++|...+++|++.  -+.-+..|-++|.|.+..|+++.|..+|+++|+++|++
T Consensus       108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~  172 (250)
T COG3063         108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF  172 (250)
T ss_pred             hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence            5555444455555555555554442  13334556666666666666666666666666666665

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.86  E-value=4.4e-08  Score=98.27  Aligned_cols=124  Identities=16%  Similarity=0.142  Sum_probs=95.6

Q ss_pred             CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 008780          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY  491 (554)
Q Consensus       412 g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~  491 (554)
                      ...+.++..+.++|.    ..+.+++       .....|+++|.+|..+|++.+|+..++++++++|+++.+|+.+|.++
T Consensus        40 ~~~e~~i~~~~~~l~----~~~~~~~-------~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  108 (296)
T PRK11189         40 LQQEVILARLNQILA----SRDLTDE-------ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYL  108 (296)
T ss_pred             hHHHHHHHHHHHHHc----cccCCcH-------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            456788999999886    3333321       23678999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780          492 MALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       492 ~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      ..+|++++|+..|++|++++|++ ..+...+..+.......+.+.  ..|++.+...|
T Consensus       109 ~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~--~~~~~al~~~P  163 (296)
T PRK11189        109 TQAGNFDAAYEAFDSVLELDPTY-NYAYLNRGIALYYGGRYELAQ--DDLLAFYQDDP  163 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHH--HHHHHHHHhCC
Confidence            99999999999999999999998 455555554443333233333  45555554444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=2.7e-08  Score=102.15  Aligned_cols=120  Identities=16%  Similarity=0.158  Sum_probs=101.1

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  479 (554)
                      .+.+.|...|..+.|.+|...|+.++..+....+...        .-...++|||.++.|++.|.+|+.+++++|.+.|.
T Consensus       416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~--------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k  487 (611)
T KOG1173|consen  416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI--------FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK  487 (611)
T ss_pred             hhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc--------chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            3567888888888899999999888865544433321        12567999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~  528 (554)
                      ++.+|--.|.+|..+|+++.|+..|.+||.++|+| .-+...|+..-..
T Consensus       488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n-~~~~~lL~~aie~  535 (611)
T KOG1173|consen  488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN-IFISELLKLAIED  535 (611)
T ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHh
Confidence            99999999999999999999999999999999998 5677777655443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.83  E-value=7.3e-08  Score=88.90  Aligned_cols=140  Identities=18%  Similarity=0.223  Sum_probs=110.3

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+.+.|..++.+|+|++|...|++|+.     +|.-.+        ....+.|++.|.+++|+++.|..+++++|++
T Consensus       102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-----~P~Y~~--------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~  168 (250)
T COG3063         102 NGDVLNNYGAFLCAQGRPEEAMQQFERALA-----DPAYGE--------PSDTLENLGLCALKAGQFDQAEEYLKRALEL  168 (250)
T ss_pred             ccchhhhhhHHHHhCCChHHHHHHHHHHHh-----CCCCCC--------cchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence            456677888889999999999999999988     343211        2568899999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      +|+++-+..-+++.++..|+|-.|...+++...--+.+....+-.++..++.-......++....++.|...+
T Consensus       169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~  241 (250)
T COG3063         169 DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE  241 (250)
T ss_pred             CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence            9999999999999999999999999999999887776533333333333333336666676677777776543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.82  E-value=8.7e-09  Score=106.12  Aligned_cols=99  Identities=26%  Similarity=0.389  Sum_probs=93.4

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  479 (554)
                      ...-.|..++-.++|++|+.+|+.||.    ..|.|           ..+|+.||+.+..-.+..+|+..|++||++.|.
T Consensus       432 vQ~~LGVLy~ls~efdraiDcf~~AL~----v~Pnd-----------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~  496 (579)
T KOG1125|consen  432 VQSGLGVLYNLSGEFDRAVDCFEAALQ----VKPND-----------YLLWNRLGATLANGNRSEEAISAYNRALQLQPG  496 (579)
T ss_pred             HHhhhHHHHhcchHHHHHHHHHHHHHh----cCCch-----------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC
Confidence            344678888899999999999999999    89998           789999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                      ++.+.|++|.+++.+|.|++|..+|-.||.+.+.
T Consensus       497 yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  497 YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999765

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.78  E-value=1.7e-07  Score=91.46  Aligned_cols=114  Identities=11%  Similarity=0.151  Sum_probs=95.7

Q ss_pred             HHHHHhhhhh-hhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          399 EKIRVTGNRL-FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       399 ~~~~~~G~~~-~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      ......+..+ ++.++|++|+..|++.+.    ..|.+.        ....+++.+|.+|+..++|++|+..+.+++...
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~----~yP~s~--------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y  210 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVK----KYPDST--------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY  210 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4455666665 567999999999999999    777652        224688999999999999999999999999988


Q ss_pred             CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          478 PA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       478 p~---~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      |+   .+.+++.+|.++..+|++++|+..|+++++..|++ ..+......|
T Consensus       211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s-~~a~~A~~rL  260 (263)
T PRK10803        211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT-DGAKQAQKRL  260 (263)
T ss_pred             CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-HHHHHHHHHH
Confidence            87   47799999999999999999999999999999997 4555444444

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.77  E-value=1.8e-07  Score=78.36  Aligned_cols=116  Identities=21%  Similarity=0.313  Sum_probs=100.5

Q ss_pred             hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008780          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  471 (554)
Q Consensus       392 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  471 (554)
                      ...++....+-.+|..+-..|+.+.|++.|.+||.    +.|..           .++|+|+|.++.-.++.++|++..+
T Consensus        37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~----l~P~r-----------aSayNNRAQa~RLq~~~e~ALdDLn  101 (175)
T KOG4555|consen   37 TQAIKASRELELKAIALAEAGDLDGALELFGQALC----LAPER-----------ASAYNNRAQALRLQGDDEEALDDLN  101 (175)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH----hcccc-----------hHhhccHHHHHHHcCChHHHHHHHH
Confidence            34577788888999999999999999999999999    77776           7899999999999999999999999


Q ss_pred             HHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          472 KVLDANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       472 ~al~~~p~~----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      +|+++...-    ..++..+|..|..+|+-+.|+.+|+.|-++-..   -++..|-.+
T Consensus       102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~---FAr~QLV~l  156 (175)
T KOG4555|consen  102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK---FAREQLVEL  156 (175)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH---HHHHHHHhc
Confidence            999996543    458999999999999999999999999999754   345444433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.77  E-value=1.6e-07  Score=81.36  Aligned_cols=105  Identities=23%  Similarity=0.406  Sum_probs=91.6

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+.+.|...++.|+|..|+..++....    .-|..+        ....+.+.++.+|++.++|.+|+..+++-++++
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~----ryP~g~--------ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh   77 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDT----RYPFGE--------YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH   77 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCCc--------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            45677889999999999999999988776    566541        224688999999999999999999999999999


Q ss_pred             CCChH---HHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCC
Q 008780          478 PAHVK---GLYRRGMAYMALGE---------------FEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       478 p~~~k---a~~~~g~a~~~l~~---------------~~~A~~~~~~al~l~P~~  514 (554)
                      |.+++   |+|++|.+++.+..               ...|..+|++.++.-|++
T Consensus        78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence            98865   89999999999987               889999999999999987

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.76  E-value=9.2e-08  Score=100.19  Aligned_cols=125  Identities=18%  Similarity=0.279  Sum_probs=113.2

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      ..-.++.-.|..|.++++++.|.-+|++|++    ++|.+           ..+..-++..+.++|+.++|+..+++|+.
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~----INP~n-----------svi~~~~g~~~~~~k~~d~AL~~~~~A~~  551 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE----INPSN-----------SVILCHIGRIQHQLKRKDKALQLYEKAIH  551 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhc----CCccc-----------hhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence            3556788899999999999999999999999    89987           67888899999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008780          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVR  536 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~  536 (554)
                      +||.|+-+.|.+|.++..+++|++|+..|+...++-|++ ..+..++.++.++....+.+.
T Consensus       552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e-s~v~~llgki~k~~~~~~~Al  611 (638)
T KOG1126|consen  552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE-SSVFALLGKIYKRLGNTDLAL  611 (638)
T ss_pred             cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHccchHHH
Confidence            999999999999999999999999999999999999997 678888888888887444444

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.76  E-value=4.1e-08  Score=97.79  Aligned_cols=132  Identities=23%  Similarity=0.238  Sum_probs=97.8

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      ....+...|..+.+.|++++|+..|++|++    +.|.+           ..+..+++.++..+|+++++...+......
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~P~~-----------~~~~~~l~~~li~~~~~~~~~~~l~~~~~~  209 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALE----LDPDD-----------PDARNALAWLLIDMGDYDEAREALKRLLKA  209 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHH----H-TT------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence            345677899999999999999999999999    89988           568888999999999999999999999888


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLT  546 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~  546 (554)
                      .|.++..+..+|.++..+|++++|+..|+++++.+|+| ..+...+..+-......+++.  .++++.+.
T Consensus       210 ~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-~~~~~~~a~~l~~~g~~~~A~--~~~~~~~~  276 (280)
T PF13429_consen  210 APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-PLWLLAYADALEQAGRKDEAL--RLRRQALR  276 (280)
T ss_dssp             -HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT-------------------
T ss_pred             CcCHHHHHHHHHHHhccccccccccccccccccccccc-ccccccccccccccccccccc--cccccccc
Confidence            89999999999999999999999999999999999998 566666666555554444444  55555543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.74  E-value=2.3e-07  Score=96.88  Aligned_cols=104  Identities=16%  Similarity=0.140  Sum_probs=66.7

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      +...+..+.+.|+|++|+..|++++.    ..|.+..      .....++.++|.++.+.+++++|+..++++++.+|++
T Consensus       144 ~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  213 (389)
T PRK11788        144 LQQLLEIYQQEKDWQKAIDVAERLEK----LGGDSLR------VEIAHFYCELAQQALARGDLDAARALLKKALAADPQC  213 (389)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHH----hcCCcch------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence            33444445555555555555555444    2222110      0113345677777777788888888888888777777


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ..+++.+|.++...|++++|+..|++++..+|.+
T Consensus       214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        214 VRASILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            7777788888888888888888888887777765

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.74  E-value=2e-07  Score=110.64  Aligned_cols=131  Identities=13%  Similarity=0.147  Sum_probs=93.5

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      ....|..+++.|++++|+..|++++.    ++|.+           ..+++++|.++..+|++++|+.+|+++++++|++
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~----~~P~~-----------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~  418 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQ----VDNTD-----------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN  418 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            34567888888888899999988888    77766           5677788888888888888888888888888887


Q ss_pred             hHHHHHHHH------------------------------------------HHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 008780          481 VKGLYRRGM------------------------------------------AYMALGEFEEAQRDFEMMMKVDKSSEPDA  518 (554)
Q Consensus       481 ~ka~~~~g~------------------------------------------a~~~l~~~~~A~~~~~~al~l~P~~~~~~  518 (554)
                      ..++..++.                                          ++...|++++|+..|+++++++|++ ..+
T Consensus       419 ~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~-~~~  497 (1157)
T PRK11447        419 TNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS-VWL  497 (1157)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHH
Confidence            776654443                                          3445688888888888888888887 455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780          519 TAALSKLKKQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       519 ~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      ...+..+.......+++.  ..|++++...|
T Consensus       498 ~~~LA~~~~~~G~~~~A~--~~l~~al~~~P  526 (1157)
T PRK11447        498 TYRLAQDLRQAGQRSQAD--ALMRRLAQQKP  526 (1157)
T ss_pred             HHHHHHHHHHcCCHHHHH--HHHHHHHHcCC
Confidence            555555544444333333  56666655443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.73  E-value=2.1e-07  Score=102.62  Aligned_cols=117  Identities=13%  Similarity=0.103  Sum_probs=102.7

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      .+.+......+..+++.+++++|+..+++++.    ..|++           ...++++|.|+.++|+|++|+..|++++
T Consensus       117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~-----------~~~~~~~a~~l~~~g~~~~A~~~y~~~~  181 (694)
T PRK15179        117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFS----GGSSS-----------AREILLEAKSWDEIGQSEQADACFERLS  181 (694)
T ss_pred             CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh----cCCCC-----------HHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            34567788999999999999999999999999    89988           7899999999999999999999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ..+|++++++..+|.+++.+|+.++|...|++|+.+...-.....+.+.++.
T Consensus       182 ~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  233 (694)
T PRK15179        182 RQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLN  233 (694)
T ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999986554223333344433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.73  E-value=2.3e-08  Score=90.99  Aligned_cols=132  Identities=21%  Similarity=0.242  Sum_probs=114.5

Q ss_pred             CCCCCeEEEEEEEcccccCCCCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhh
Q 008780          365 VPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG  444 (554)
Q Consensus       365 ip~~~~l~~~ieL~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~  444 (554)
                      +|.+.++.-+|.+..+.+--....++.++   +|..+.++|+.+=.-|-+..|..-|.+++.    +.|.-         
T Consensus        35 ~~~qp~lqqEV~iarlsqlL~~~~l~~ee---RA~l~fERGvlYDSlGL~~LAR~DftQaLa----i~P~m---------   98 (297)
T COG4785          35 VPLQPTLQQEVILARMSQILASRALTDEE---RAQLLFERGVLYDSLGLRALARNDFSQALA----IRPDM---------   98 (297)
T ss_pred             ccCCccHHHHHHHHHHHHHHHhccCChHH---HHHHHHHhcchhhhhhHHHHHhhhhhhhhh----cCCCc---------
Confidence            45555566666666555533334456554   488899999999999999999999999999    88886         


Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       445 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                        ..+++-+|.-+...++|+.|.+.++.++++||.+--|+.+||.+++--|+|..|.+++.+-.+-||++
T Consensus        99 --~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D  166 (297)
T COG4785          99 --PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND  166 (297)
T ss_pred             --HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCC
Confidence              77999999999999999999999999999999999999999999999999999999999999999987

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.73  E-value=6.5e-08  Score=75.08  Aligned_cols=68  Identities=24%  Similarity=0.414  Sum_probs=61.9

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008780          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  522 (554)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l  522 (554)
                      ...|++.++|.+|+..+++++.++|+++.+++.+|.++..+|+|.+|+.+|+++++++|++ ..+....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~-~~~~~~~   69 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD-PDARALR   69 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc-HHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999987 4444433

>PLN02789 farnesyltranstransferase

Probab=98.73  E-value=3.5e-07  Score=92.03  Aligned_cols=113  Identities=17%  Similarity=0.105  Sum_probs=96.0

Q ss_pred             HHHHHHHhhhhhhhcC-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCH--HHHHHHHHHH
Q 008780          397 EAEKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC--RKSIEACNKV  473 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g-~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~--~~A~~~~~~a  473 (554)
                      ....+..+|..+...+ ++.+|+..+.+++.    .+|.+           ..++++++.++.++++.  .+++.+++++
T Consensus        70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~----~npkn-----------yqaW~~R~~~l~~l~~~~~~~el~~~~ka  134 (320)
T PLN02789         70 NYTVWHFRRLCLEALDADLEEELDFAEDVAE----DNPKN-----------YQIWHHRRWLAEKLGPDAANKELEFTRKI  134 (320)
T ss_pred             hHHHHHHHHHHHHHcchhHHHHHHHHHHHHH----HCCcc-----------hHHhHHHHHHHHHcCchhhHHHHHHHHHH
Confidence            3456667777777777 57899999999998    78877           67899999999999874  7889999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       474 l~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      |+++|.|..||..|+.++..+++|++|++++.+++++||.|. .++.....+
T Consensus       135 l~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~-sAW~~R~~v  185 (320)
T PLN02789        135 LSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN-SAWNQRYFV  185 (320)
T ss_pred             HHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch-hHHHHHHHH
Confidence            999999999999999999999999999999999999999984 455544433

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.72  E-value=1.8e-07  Score=110.98  Aligned_cols=74  Identities=15%  Similarity=0.230  Sum_probs=49.0

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       452 nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      +++.++++.+++++|+..++++++++|+++.+++.+|.++...|++++|++.|+++++++|++ ..+...+..+.
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~-~~a~~~L~~l~  429 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN-TNAVRGLANLY  429 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            445566666667777777777777777777777777777777777777777777777777766 33444444443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.72  E-value=3.3e-07  Score=95.63  Aligned_cols=100  Identities=20%  Similarity=0.218  Sum_probs=69.3

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  479 (554)
                      .+...|..+++.+++++|+..|+++++    ..|.+           ..+++.+|.++.++|++++|+..+++++..+|.
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  246 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALA----ADPQC-----------VRASILLGDLALAQGDYAAAIEALERVEEQDPE  246 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHh----HCcCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence            455677777888888888888888887    55554           345666677777777777777777777766665


Q ss_pred             C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          480 H-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       480 ~-~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      + ..++..++.+|...|++++|+..++++++++|++
T Consensus       247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~  282 (389)
T PRK11788        247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA  282 (389)
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            5 3455666677777777777777777777766654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.71  E-value=3.4e-07  Score=86.24  Aligned_cols=116  Identities=19%  Similarity=0.226  Sum_probs=103.5

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      ...+..+|..+++.|+|..|+..+++|..    +.|.|           ..+|+.+|.||.++|+++.|...+.+++++.
T Consensus       100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~----l~p~d-----------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~  164 (257)
T COG5010         100 RELLAAQGKNQIRNGNFGEAVSVLRKAAR----LAPTD-----------WEAWNLLGAALDQLGRFDEARRAYRQALELA  164 (257)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHhc----cCCCC-----------hhhhhHHHHHHHHccChhHHHHHHHHHHHhc
Confidence            34455699999999999999999999999    99998           7899999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~  529 (554)
                      |+++..+-++|..++-.|+++.|...+..+....+.+ ..+..-|..+....
T Consensus       165 ~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad-~~v~~NLAl~~~~~  215 (257)
T COG5010         165 PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD-SRVRQNLALVVGLQ  215 (257)
T ss_pred             cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999887766 55666665554433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.70  E-value=9.6e-08  Score=91.57  Aligned_cols=99  Identities=19%  Similarity=0.234  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (554)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~  528 (554)
                      -+-+-|.-+++.++|.+|+..|.+||+++|.|+-.|.+||.||..||+|+.|+++.++|+.+||+. ..++-.|..+...
T Consensus        83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~  161 (304)
T KOG0553|consen   83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHc
Confidence            344567778899999999999999999999999999999999999999999999999999999986 5566666666666


Q ss_pred             HHHHHHHHHHHHHHhhcccccc
Q 008780          529 RQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       529 ~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      +...+.+.  ..|+|.+.-.|.
T Consensus       162 ~gk~~~A~--~aykKaLeldP~  181 (304)
T KOG0553|consen  162 LGKYEEAI--EAYKKALELDPD  181 (304)
T ss_pred             cCcHHHHH--HHHHhhhccCCC
Confidence            65444444  568888776554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.70  E-value=2.8e-07  Score=104.55  Aligned_cols=112  Identities=11%  Similarity=0.175  Sum_probs=100.9

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+...|..+.+.|++.+|+..|++++.    +.|.+           ..++.+++.++...+++.+|+..++++++.+
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~  113 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALS----LEPQN-----------DDYQRGLILTLADAGQYDEALVKAKQLVSGA  113 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            44578889999999999999999999999    88887           5678899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      |+++. ++.+|.++...|++++|+..|+++++++|++ ..+...+..+.
T Consensus       114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~-~~~~~~la~~l  160 (765)
T PRK10049        114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT-QQYPTEYVQAL  160 (765)
T ss_pred             CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            99999 9999999999999999999999999999998 55555555443

>PLN02789 farnesyltranstransferase

Probab=98.70  E-value=3.3e-07  Score=92.27  Aligned_cols=126  Identities=13%  Similarity=0.082  Sum_probs=104.8

Q ss_pred             hhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCChHHHHH
Q 008780          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDANPAHVKGLYR  486 (554)
Q Consensus       408 ~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~~p~~~ka~~~  486 (554)
                      +...+++.+|+..+.++|.    ++|.+           ..++++++.|+.+++ ++.+|+.+++++++.+|++..+|+.
T Consensus        47 l~~~e~serAL~lt~~aI~----lnP~~-----------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~  111 (320)
T PLN02789         47 YASDERSPRALDLTADVIR----LNPGN-----------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH  111 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHH----HCchh-----------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence            4567789999999999999    89988           789999999999998 6899999999999999999999999


Q ss_pred             HHHHHHHcCCH--HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008780          487 RGMAYMALGEF--EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLGK  551 (554)
Q Consensus       487 ~g~a~~~l~~~--~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~~  551 (554)
                      |+.++..+++.  ++++..++++++++|.| -.++.....+-.....-+.+-  ..+.+++...+..
T Consensus       112 R~~~l~~l~~~~~~~el~~~~kal~~dpkN-y~AW~~R~w~l~~l~~~~eeL--~~~~~~I~~d~~N  175 (320)
T PLN02789        112 RRWLAEKLGPDAANKELEFTRKILSLDAKN-YHAWSHRQWVLRTLGGWEDEL--EYCHQLLEEDVRN  175 (320)
T ss_pred             HHHHHHHcCchhhHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHCCCc
Confidence            99999999974  78899999999999998 567776666665555333343  5666666654443

>TIGR00115 tig trigger factor

Probab=98.69  E-value=4e-08  Score=103.15  Aligned_cols=96  Identities=19%  Similarity=0.257  Sum_probs=81.3

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (554)
Q Consensus        45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~  124 (554)
                      ++.||.|.++|+++. +|+.|+++.      ..++.|.+|.+.+++||+.+|.||++|+++.|.+++...|+.....   
T Consensus       147 ~~~gD~V~v~~~~~~-dg~~~~~~~------~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~~---  216 (408)
T TIGR00115       147 AEKGDRVTIDFEGFI-DGEAFEGGK------AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEELA---  216 (408)
T ss_pred             cCCCCEEEEEEEEEE-CCEECcCCC------CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccCC---
Confidence            689999999999975 899888654      3589999999999999999999999999999999999999877654   


Q ss_pred             CCCCCCCCceEEEEEEEeeeccccccCCCCeE
Q 008780          125 PSTFPKDEELHFEIEMIDFAKAKIIADDFGVV  156 (554)
Q Consensus       125 ~~~ip~~~~l~~~v~l~~~~~~~~~~~d~gl~  156 (554)
                            |.++.|.|+|.+|.....+.-+..+.
T Consensus       217 ------gk~~~f~v~i~~I~~~~~peldDefa  242 (408)
T TIGR00115       217 ------GKEATFKVTVKEVKEKELPELDDEFA  242 (408)
T ss_pred             ------CCeEEEEEEEEEeccCCCCCCCHHHH
Confidence                  89999999999998665444333333

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.67  E-value=5.9e-07  Score=97.03  Aligned_cols=103  Identities=17%  Similarity=0.249  Sum_probs=69.4

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+..+||.+|.+|++++|.+...++++    .+|..           ..+|+.||.||..+|+..+|+.+.-.|-.+
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIk----qdp~~-----------~~ay~tL~~IyEqrGd~eK~l~~~llAAHL  202 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIK----QDPRN-----------PIAYYTLGEIYEQRGDIEKALNFWLLAAHL  202 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCccc-----------hhhHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            478889999999999999999999999999    77776           445555555555555555555555555555


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +|.+..-|.+++.-...+|+++.|+-+|.+|++++|.|
T Consensus       203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n  240 (895)
T KOG2076|consen  203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN  240 (895)
T ss_pred             CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc
Confidence            55555555555555555555555555555555555554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.66  E-value=4.6e-07  Score=104.29  Aligned_cols=114  Identities=25%  Similarity=0.406  Sum_probs=95.3

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      ..+..+...|..++..|++++|+..|+++++    ..|.+           ..+++.+|.+++..++|++|+..+++++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~  187 (899)
T TIGR02917       123 GAAELLALRGLAYLGLGQLELAQKSYEQALA----IDPRS-----------LYAKLGLAQLALAENRFDEARALIDEVLT  187 (899)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------hhhHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3466788899999999999999999999998    77766           56788888888889999999999999988


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      .+|.+..+++.+|.++...|++++|+..|++++.++|++ ..+...+..+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~  236 (899)
T TIGR02917       188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN-PAVLLALATI  236 (899)
T ss_pred             hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Confidence            888888889999999999999999999999999888887 4444444333

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.66  E-value=5.9e-07  Score=86.90  Aligned_cols=137  Identities=14%  Similarity=0.139  Sum_probs=105.0

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc--------cCHHHHHHHH
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--------GECRKSIEAC  470 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl--------~~~~~A~~~~  470 (554)
                      ..+...|..+++.+++++|+..|+++++    ..|.+..        ...+++++|.|+.++        +++.+|+..+
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~~~--------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~  138 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIR----LHPNHPD--------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF  138 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCCc--------hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence            4567889999999999999999999999    7776532        134688899999876        8899999999


Q ss_pred             HHHHhhCCCChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHH
Q 008780          471 NKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQV  531 (554)
Q Consensus       471 ~~al~~~p~~~ka~-----------------~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~--~~~~~~l~~l~~~~~~  531 (554)
                      ++++..+|++..++                 +.+|..++..|++.+|+..|++++...|++.  ..++..+..+......
T Consensus       139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~  218 (235)
T TIGR03302       139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL  218 (235)
T ss_pred             HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence            99999999986542                 4678899999999999999999999988752  3455555555555543


Q ss_pred             HHHHHHHHHHHhhccccc
Q 008780          532 KLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       532 ~~~~~~~~~y~~~f~~~~  549 (554)
                      .+++.  ..++.+-.++|
T Consensus       219 ~~~A~--~~~~~l~~~~~  234 (235)
T TIGR03302       219 KDLAQ--DAAAVLGANYP  234 (235)
T ss_pred             HHHHH--HHHHHHHhhCC
Confidence            33333  45555544443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.66  E-value=2.5e-07  Score=81.58  Aligned_cols=97  Identities=13%  Similarity=0.045  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ....+.+|.-++..|++++|...++-+..+||.++..||++|.++..+|+|++|+..|.+|+.++|++ +....-+..+.
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~~~~~ag~c~  113 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-chHHHHHHHHH
Confidence            56778889999999999999999999999999999999999999999999999999999999999988 55555555555


Q ss_pred             HHHHHHHHHHHHHHHHhhcc
Q 008780          527 KQRQVKLKVRLENSLKGCLT  546 (554)
Q Consensus       527 ~~~~~~~~~~~~~~y~~~f~  546 (554)
                      ........++  +.|+...+
T Consensus       114 L~lG~~~~A~--~aF~~Ai~  131 (157)
T PRK15363        114 LACDNVCYAI--KALKAVVR  131 (157)
T ss_pred             HHcCCHHHHH--HHHHHHHH
Confidence            5444333333  45554443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.65  E-value=4.4e-07  Score=104.46  Aligned_cols=126  Identities=17%  Similarity=0.201  Sum_probs=82.9

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      +...|..+...|++++|+..|++++.    ..|.+           ..++.+++..+.+.++ .+|+..+++++.+.|++
T Consensus       773 ~~~la~~~~~~g~~~~A~~~~~~~~~----~~p~~-----------~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~  836 (899)
T TIGR02917       773 RTALAELYLAQKDYDKAIKHYRTVVK----KAPDN-----------AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNI  836 (899)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCC
Confidence            34455555566666666666666665    45544           4566777777777777 66777777777777777


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008780          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCL  545 (554)
Q Consensus       481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f  545 (554)
                      +..+..+|.++..+|++++|+..|+++++++|.+ ..+...+..+..+....+++.  ..|++|+
T Consensus       837 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~g~~~~A~--~~~~~~~  898 (899)
T TIGR02917       837 PAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA-AAIRYHLALALLATGRKAEAR--KELDKLL  898 (899)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCCHHHHH--HHHHHHh
Confidence            7777777777777777777777777777777765 455555555544444344444  5666654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.63  E-value=9.4e-08  Score=72.37  Aligned_cols=64  Identities=17%  Similarity=0.400  Sum_probs=58.5

Q ss_pred             HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCh
Q 008780          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (554)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~  481 (554)
                      .+|..+++.|+|++|+..|+++++    ..|.+           ..+++.+|.|+..+|++++|+..++++++.+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK----QDPDN-----------PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC----CSTTH-----------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            578999999999999999999999    88876           78999999999999999999999999999999875

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.63  E-value=9.3e-08  Score=73.05  Aligned_cols=67  Identities=28%  Similarity=0.489  Sum_probs=60.2

Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780          457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (554)
Q Consensus       457 ~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~  524 (554)
                      +++.|+|++|+..+++++..+|++..+++.+|.+++..|++++|...+++++..+|++ +.++..+.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~-~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN-PEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH-HHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH-HHHHHHHhc
Confidence            3578999999999999999999999999999999999999999999999999999996 666665554

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.62  E-value=2.2e-06  Score=83.12  Aligned_cols=121  Identities=25%  Similarity=0.331  Sum_probs=96.8

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+...|..++..|+|++|+..|++++.    ..|..+        ....+.+++|.+|+++++|.+|+..+++.++.+
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP~s~--------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDN----RYPFGP--------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCh--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            45577899999999999999999999999    777762        224567899999999999999999999999999


Q ss_pred             CCC---hHHHHHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHH
Q 008780          478 PAH---VKGLYRRGMAYMALGE------------------FEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQ  530 (554)
Q Consensus       478 p~~---~ka~~~~g~a~~~l~~------------------~~~A~~~~~~al~l~P~~~--~~~~~~l~~l~~~~~  530 (554)
                      |++   ..++|.+|.++..+++                  ..+|+..|++.++..|++.  .+++..+..++.++.
T Consensus       100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la  175 (243)
T PRK10866        100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLA  175 (243)
T ss_pred             cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence            876   4589999999866641                  3578899999999999873  234444455544443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.59  E-value=9.8e-07  Score=70.47  Aligned_cols=98  Identities=23%  Similarity=0.344  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (554)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~  528 (554)
                      +++++|.++...+++.+|+..+.++++..|.+..+++.+|.++...+++++|+..|++++.+.|.+ ......+..+...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~   80 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999999999999987 4455555555544


Q ss_pred             HHHHHHHHHHHHHHhhccccc
Q 008780          529 RQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       529 ~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      ....+++.  ..+.+.+...|
T Consensus        81 ~~~~~~a~--~~~~~~~~~~~   99 (100)
T cd00189          81 LGKYEEAL--EAYEKALELDP   99 (100)
T ss_pred             HHhHHHHH--HHHHHHHccCC
Confidence            44333433  56666655443

>PRK01490 tig trigger factor; Provisional

Probab=98.59  E-value=1.2e-07  Score=100.42  Aligned_cols=90  Identities=19%  Similarity=0.309  Sum_probs=78.4

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (554)
Q Consensus        45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~  124 (554)
                      ++.||.|.++|++.. +|+.|+++.      ..++.|.+|.+++++||+.+|.||++|+++.|.+++...|+...+.   
T Consensus       158 ~~~gD~V~vd~~~~~-~g~~~~~~~------~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~la---  227 (435)
T PRK01490        158 AENGDRVTIDFVGSI-DGEEFEGGK------AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDLA---  227 (435)
T ss_pred             CCCCCEEEEEEEEEE-CCEECcCCC------CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccCC---
Confidence            689999999999996 898887654      3589999999999999999999999999999999998999876654   


Q ss_pred             CCCCCCCCceEEEEEEEeeecccccc
Q 008780          125 PSTFPKDEELHFEIEMIDFAKAKIIA  150 (554)
Q Consensus       125 ~~~ip~~~~l~~~v~l~~~~~~~~~~  150 (554)
                            |.++.|.|+|.++.....+.
T Consensus       228 ------gk~~~f~v~v~~V~~~~~pe  247 (435)
T PRK01490        228 ------GKEATFKVTVKEVKEKELPE  247 (435)
T ss_pred             ------CCeEEEEEEEEEeccCCCCC
Confidence                  88999999999998654433

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.57  E-value=9.1e-07  Score=79.04  Aligned_cols=99  Identities=28%  Similarity=0.320  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHhhCCCChHH
Q 008780          414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL----------GECRKSIEACNKVLDANPAHVKG  483 (554)
Q Consensus       414 ~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl----------~~~~~A~~~~~~al~~~p~~~ka  483 (554)
                      |+.|.+.|+.+..    .+|.|           ...++|.|.+++.+          ..+++|+.-+++||.++|+...|
T Consensus         7 FE~ark~aea~y~----~nP~D-----------adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA   71 (186)
T PF06552_consen    7 FEHARKKAEAAYA----KNPLD-----------ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA   71 (186)
T ss_dssp             HHHHHHHHHHHHH----H-TT------------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHHHHHH----hCcHh-----------HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            6788899998888    78888           56677777776665          34788999999999999999999


Q ss_pred             HHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780          484 LYRRGMAYMALGE-----------FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (554)
Q Consensus       484 ~~~~g~a~~~l~~-----------~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~  528 (554)
                      ++.+|.||..++.           |++|..+|++|...+|+| ...+..|....+.
T Consensus        72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~~ka  126 (186)
T PF06552_consen   72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMAAKA  126 (186)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHhh
Confidence            9999999998765           889999999999999998 5677766655443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.56  E-value=4.7e-07  Score=96.31  Aligned_cols=103  Identities=23%  Similarity=0.328  Sum_probs=94.9

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHH--HHHHHHh
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE--ACNKVLD  475 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~--~~~~al~  475 (554)
                      +..++..|..+..+|++.+|...|..|+.    ++|++           ..+...+|.|+++.|+-.-|..  ....+++
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~----ldP~h-----------v~s~~Ala~~lle~G~~~la~~~~~L~dalr  748 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALA----LDPDH-----------VPSMTALAELLLELGSPRLAEKRSLLSDALR  748 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHh----cCCCC-----------cHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence            45568889999999999999999999999    99998           7889999999999999888888  9999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~  515 (554)
                      +||.|.+|||.+|.++..+|+.++|..+|..|+++++.++
T Consensus       749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            9999999999999999999999999999999999998873

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.56  E-value=2.7e-07  Score=94.17  Aligned_cols=65  Identities=14%  Similarity=0.179  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG---LYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka---~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      ...++|+|.+|.++++|++|+..|++||+++|++..+   ||++|.+|..+|++++|+++|++|+++.
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            7899999999999999999999999999999999865   9999999999999999999999999983

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=1.3e-07  Score=98.44  Aligned_cols=93  Identities=20%  Similarity=0.296  Sum_probs=78.2

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (554)
Q Consensus        45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~  124 (554)
                      ++.||.|+|+|.++ .||..|...      ....+.+.+|++++||||+.+|.||++|++..|.+-....|....+.   
T Consensus       158 a~~gD~v~IDf~g~-iDg~~fegg------~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~La---  227 (441)
T COG0544         158 AENGDRVTIDFEGS-VDGEEFEGG------KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEELA---  227 (441)
T ss_pred             cccCCEEEEEEEEE-EcCeeccCc------cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHhC---
Confidence            68999999999997 699988844      44679999999999999999999999999999877777777766664   


Q ss_pred             CCCCCCCCceEEEEEEEeeeccccccCCC
Q 008780          125 PSTFPKDEELHFEIEMIDFAKAKIIADDF  153 (554)
Q Consensus       125 ~~~ip~~~~l~~~v~l~~~~~~~~~~~d~  153 (554)
                            |.+..|.|+|..|.....+.-|.
T Consensus       228 ------GK~a~F~V~vkeVk~~elpEldD  250 (441)
T COG0544         228 ------GKEATFKVKVKEVKKRELPELDD  250 (441)
T ss_pred             ------CCceEEEEEEEEEeecCCCCCCH
Confidence                  88999999999998765444333

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.55  E-value=3.2e-07  Score=88.44  Aligned_cols=104  Identities=18%  Similarity=0.239  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p---~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~  523 (554)
                      ..+++|+|.|++--++|+-++..+.+|+....   .-+..||++|.+....|++..|.++|+-||.-||+| .++.+-|.
T Consensus       358 peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-~ealnNLa  436 (478)
T KOG1129|consen  358 PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-GEALNNLA  436 (478)
T ss_pred             hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch-HHHHHhHH
Confidence            56899999999999999999999999997643   357899999999999999999999999999999998 56666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccC
Q 008780          524 KLKKQRQVKLKVRLENSLKGCLTRSLGKFL  553 (554)
Q Consensus       524 ~l~~~~~~~~~~~~~~~y~~~f~~~~~~~~  553 (554)
                      -|+.+...-..++  ..|...-+.+|+.|.
T Consensus       437 vL~~r~G~i~~Ar--sll~~A~s~~P~m~E  464 (478)
T KOG1129|consen  437 VLAARSGDILGAR--SLLNAAKSVMPDMAE  464 (478)
T ss_pred             HHHhhcCchHHHH--HHHHHhhhhCccccc
Confidence            6665555444555  667776666776653

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.55  E-value=1e-06  Score=80.58  Aligned_cols=110  Identities=14%  Similarity=0.166  Sum_probs=84.2

Q ss_pred             hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---
Q 008780          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---  480 (554)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---  480 (554)
                      ..+.+|-...|..+...+...++    ....+         ....+++++|.++..+++|++|+..+++++.+.|+.   
T Consensus         5 ~~~~~~~~~~~~~~~~~l~~~~~----~~~~~---------~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~   71 (168)
T CHL00033          5 QRNDNFIDKTFTIVADILLRILP----TTSGE---------KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR   71 (168)
T ss_pred             cccccccccccccchhhhhHhcc----CCchh---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh
Confidence            44566666667776666644443    22222         236789999999999999999999999999987653   


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      +.+|+++|.++..+|++++|+..|++|+.++|.+ ......+..+..
T Consensus        72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~-~~~~~~la~i~~  117 (168)
T CHL00033         72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFL-PQALNNMAVICH  117 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHH
Confidence            4589999999999999999999999999999987 444444443333

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=1e-06  Score=87.58  Aligned_cols=121  Identities=24%  Similarity=0.355  Sum_probs=101.1

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHh-hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFV-GKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~-~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      .+.+++-+|..++-..+.+.|+.+|+++|+    ++|+..+...... ......+-+.|.-.++.|+|..|.+.|..+|.
T Consensus       202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~----ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~  277 (486)
T KOG0550|consen  202 NAEALYVRGLCLYYNDNADKAINHFQQALR----LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN  277 (486)
T ss_pred             hhHHHHhcccccccccchHHHHHHHhhhhc----cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence            477889999999999999999999999999    9998755433222 22234567788888999999999999999999


Q ss_pred             hCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780          476 ANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (554)
Q Consensus       476 ~~p~~----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~  524 (554)
                      +||+|    ++.|++||.++..+|+..+|+.+.+.|++|||.-   ++..+..
T Consensus       278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy---ikall~r  327 (486)
T KOG0550|consen  278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY---IKALLRR  327 (486)
T ss_pred             CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH---HHHHHHH
Confidence            99975    7789999999999999999999999999999853   4444443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.54  E-value=2.5e-06  Score=80.59  Aligned_cols=122  Identities=23%  Similarity=0.336  Sum_probs=93.8

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..++..|+|.+|+..|++.+.    ..|.++        ....+.+.+|.++++.++|.+|+..+++.+..
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~----~~P~s~--------~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLID----RYPNSP--------YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHH----H-TTST--------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCCCh--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            367788999999999999999999999998    566552        23568899999999999999999999999999


Q ss_pred             CCCCh---HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHH
Q 008780          477 NPAHV---KGLYRRGMAYMALG-----------EFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQ  530 (554)
Q Consensus       477 ~p~~~---ka~~~~g~a~~~l~-----------~~~~A~~~~~~al~l~P~~~--~~~~~~l~~l~~~~~  530 (554)
                      .|+++   .|+|.+|.+++.+.           ...+|+..|+..++.-|++.  ..++..+..|+..+.
T Consensus        72 yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la  141 (203)
T PF13525_consen   72 YPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA  141 (203)
T ss_dssp             -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH
Confidence            99875   48999999987754           34589999999999999874  244445555554443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.53  E-value=8.1e-07  Score=91.35  Aligned_cols=97  Identities=15%  Similarity=0.136  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780          450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (554)
Q Consensus       450 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~  529 (554)
                      +...|..++..++|.+|+..+++||+++|+++.+|+.+|.+|..+|++++|+.++++|++++|++ ..+...+..+...+
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~l   83 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence            45668889999999999999999999999999999999999999999999999999999999998 56666666665555


Q ss_pred             HHHHHHHHHHHHHhhccccc
Q 008780          530 QVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       530 ~~~~~~~~~~~y~~~f~~~~  549 (554)
                      ...+.+.  ..|++.....|
T Consensus        84 g~~~eA~--~~~~~al~l~P  101 (356)
T PLN03088         84 EEYQTAK--AALEKGASLAP  101 (356)
T ss_pred             CCHHHHH--HHHHHHHHhCC
Confidence            5333443  56666655444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.53  E-value=1.2e-06  Score=92.39  Aligned_cols=146  Identities=18%  Similarity=0.175  Sum_probs=113.7

Q ss_pred             hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (554)
Q Consensus       394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (554)
                      .+..+..++..|..|...++|.+|+..|++|+..+......+       ....+..+.|||..|.+.|+|++|..+|++|
T Consensus       237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A  309 (508)
T KOG1840|consen  237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERA  309 (508)
T ss_pred             CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            344566667899999999999999999999999877654433       2334778999999999999999999999999


Q ss_pred             HhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC--hHHHHHHHHHHHHHHHHHHHHHHH
Q 008780          474 LDAN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD-----KSS--EPDATAALSKLKKQRQVKLKVRLE  538 (554)
Q Consensus       474 l~~~--------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~-----P~~--~~~~~~~l~~l~~~~~~~~~~~~~  538 (554)
                      +++-        |.-+..+...+.++..++++++|...|++++++-     ++|  -..++..|..+.....+.+.+.  
T Consensus       310 l~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~--  387 (508)
T KOG1840|consen  310 LEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE--  387 (508)
T ss_pred             HHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH--
Confidence            9873        4456788899999999999999999999999972     222  1345566667766666444544  


Q ss_pred             HHHHhhcccc
Q 008780          539 NSLKGCLTRS  548 (554)
Q Consensus       539 ~~y~~~f~~~  548 (554)
                      .+|+++....
T Consensus       388 ~~~k~ai~~~  397 (508)
T KOG1840|consen  388 ELYKKAIQIL  397 (508)
T ss_pred             HHHHHHHHHH
Confidence            6787776553

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=1.7e-06  Score=83.62  Aligned_cols=107  Identities=20%  Similarity=0.288  Sum_probs=95.2

Q ss_pred             hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc---CHHHHHHHH
Q 008780          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEAC  470 (554)
Q Consensus       394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~  470 (554)
                      ..+.++.+.-.|..++..+++..|...|.+|++    +.|++           ..++..+|.+++...   .-.++...+
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r----L~g~n-----------~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALR----LAGDN-----------PEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            344567788999999999999999999999999    89988           567777777776653   478899999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780          471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       471 ~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~  515 (554)
                      ++++..||.|+.+++.+|..+++.|+|.+|+..+++.|.+.|.+.
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            999999999999999999999999999999999999999999873

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.51  E-value=5.9e-07  Score=89.81  Aligned_cols=117  Identities=17%  Similarity=0.177  Sum_probs=102.2

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +.++.++||..|..|++++|.+.|++||+    .+..           ...+++|++..+.++++.++|++++-+.-.+-
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~----ndas-----------c~ealfniglt~e~~~~ldeald~f~klh~il  554 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALN----NDAS-----------CTEALFNIGLTAEALGNLDEALDCFLKLHAIL  554 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHc----CchH-----------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999998    3222           36789999999999999999999999988887


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      -+|+..++.++.+|..+.+...|++.|.++..+-|++ +.+...|..|..+..
T Consensus       555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~d-p~ilskl~dlydqeg  606 (840)
T KOG2003|consen  555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND-PAILSKLADLYDQEG  606 (840)
T ss_pred             HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC-HHHHHHHHHHhhccc
Confidence            8899999999999999999999999999999999998 667767777765554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.50  E-value=1.6e-06  Score=73.81  Aligned_cols=101  Identities=27%  Similarity=0.346  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHH
Q 008780          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAAL  522 (554)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~--~~~~~~l  522 (554)
                      ..++++|.++.+.++|++|+..|.+++..+|++   ..+++.+|.++...+++++|+..|++++..+|++.  ..+...+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            578999999999999999999999999999876   67999999999999999999999999999999863  2344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          523 SKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       523 ~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      ..+........++.  ..|..+....|+
T Consensus        83 ~~~~~~~~~~~~A~--~~~~~~~~~~p~  108 (119)
T TIGR02795        83 GMSLQELGDKEKAK--ATLQQVIKRYPG  108 (119)
T ss_pred             HHHHHHhCChHHHH--HHHHHHHHHCcC
Confidence            44444443333443  677777766654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.49  E-value=4.4e-07  Score=69.28  Aligned_cols=67  Identities=27%  Similarity=0.397  Sum_probs=60.2

Q ss_pred             hhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHH
Q 008780          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR  487 (554)
Q Consensus       408 ~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~  487 (554)
                      +++.|+|++|+..|++++.    ..|.+           ..+++++|.||++.|++++|...+.+++..+|+++..+.-+
T Consensus         1 ll~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQ----RNPDN-----------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHH----HTTTS-----------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            4678999999999999999    88988           67899999999999999999999999999999988777766


Q ss_pred             HH
Q 008780          488 GM  489 (554)
Q Consensus       488 g~  489 (554)
                      ++
T Consensus        66 a~   67 (68)
T PF14559_consen   66 AQ   67 (68)
T ss_dssp             HH
T ss_pred             hc
Confidence            65

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.48  E-value=3.1e-06  Score=72.13  Aligned_cols=98  Identities=17%  Similarity=0.136  Sum_probs=86.1

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  479 (554)
                      .+.+.|..+-..|+.++|+..|++|+.    .....        ..+..++.++|.++..+|++++|+..+++++...|+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~----~gL~~--------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALA----AGLSG--------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCc--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            467888999999999999999999999    44333        123568899999999999999999999999999888


Q ss_pred             ---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780          480 ---HVKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (554)
Q Consensus       480 ---~~ka~~~~g~a~~~l~~~~~A~~~~~~al~  509 (554)
                         +......++.++..+|++++|+..+-.++.
T Consensus        71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   71 DELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence               888888899999999999999999988775

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.47  E-value=4.7e-07  Score=92.18  Aligned_cols=123  Identities=22%  Similarity=0.240  Sum_probs=103.8

Q ss_pred             hhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc---cCHHHHH
Q 008780          391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL---GECRKSI  467 (554)
Q Consensus       391 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl---~~~~~A~  467 (554)
                      +.+..+.++..+..||..|-.+.+..|+..|.+++.    ..|..           ..+|.|+|.++++.   ++--.|+
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q----~~~~~-----------~~~l~nraa~lmkRkW~~d~~~Al  431 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQ----YVPDA-----------IYLLENRAAALMKRKWRGDSYLAL  431 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhh----hccch-----------hHHHHhHHHHHHhhhccccHHHHH
Confidence            467788899999999999999999999999999998    44443           67999999999985   5788999


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (554)
Q Consensus       468 ~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~  529 (554)
                      ..|..|++++|...||||+++.|+..++++.+|+.+...+....|.+ .+......-+.+..
T Consensus       432 rDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd-~a~~~~v~~l~rDi  492 (758)
T KOG1310|consen  432 RDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD-VARQNFVLCLPRDI  492 (758)
T ss_pred             HhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh-hhhhhhhhccccch
Confidence            99999999999999999999999999999999999988777778865 34444443343333

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.46  E-value=2.9e-06  Score=96.36  Aligned_cols=102  Identities=11%  Similarity=0.076  Sum_probs=96.4

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      ...+..+|..+...|++++|+..+++++.    ..|.+           ..+++++|.++..+|++++|+..++++++++
T Consensus       359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~----~~P~n-----------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~  423 (765)
T PRK10049        359 LQGQSLLSQVAKYSNDLPQAEMRARELAY----NAPGN-----------QGLRIDYASVLQARGWPRAAENELKKAEVLE  423 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence            34556788899999999999999999999    88988           6799999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      |++..+++.+|.+++.+++|++|...++++++.+|++
T Consensus       424 Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~  460 (765)
T PRK10049        424 PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD  460 (765)
T ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999998

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.45  E-value=4.5e-07  Score=71.34  Aligned_cols=65  Identities=25%  Similarity=0.409  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDAN-------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      ...+++|+|.+|..+|+|++|+.++++++.+.       |.-+.+++++|.++..+|++++|+..+++|+++
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            46789999999999999999999999999762       234779999999999999999999999999986

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.44  E-value=2.4e-06  Score=76.11  Aligned_cols=97  Identities=19%  Similarity=0.232  Sum_probs=43.4

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..........+..+++..+...+.+.+.    -.|...        ....+.+.+|.+++..|++++|+..++.++...
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~----~~~~s~--------ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~   78 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAK----DYPSSP--------YAALAALQLAKAAYEQGDYDEAKAALEKALANA   78 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCCCh--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence            33444444444444555444444444444    233220        112334444555555555555555555555443


Q ss_pred             CCC---hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008780          478 PAH---VKGLYRRGMAYMALGEFEEAQRDFEM  506 (554)
Q Consensus       478 p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~  506 (554)
                      |+.   ..+.++++.+++..++|++|+..++.
T Consensus        79 ~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   79 PDPELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            322   23444455555555555555554433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.42  E-value=3.8e-06  Score=80.32  Aligned_cols=106  Identities=17%  Similarity=0.279  Sum_probs=94.2

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+++.+-.+++.|+|..|...|..-+.    .-|.+.        ....+++-||.|++.+|+|.+|...+..+..-.
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~----~YP~s~--------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~  208 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIK----KYPNST--------YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY  208 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCc--------ccchhHHHHHHHHHhcccchHHHHHHHHHHHhC
Confidence            34488999999999999999999999988    556541        235689999999999999999999999999998


Q ss_pred             CCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780          478 PAHV---KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       478 p~~~---ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~  515 (554)
                      |.++   .++|.+|.+...+++.++|.+.|+++.+--|+..
T Consensus       209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            8765   5699999999999999999999999999999983

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.42  E-value=4.2e-06  Score=94.17  Aligned_cols=147  Identities=9%  Similarity=0.003  Sum_probs=108.5

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhH----------------H-HHHhh------hHHHHHHHH
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE----------------G-KVFVG------KRNLLHLNV  453 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee----------------~-~~~~~------~~~~~~~nl  453 (554)
                      .+...+..+...+++|+|..|+..|+++++    .+|.+...                . ..+..      .....+..+
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~----~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal  108 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESK----AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA  108 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHh----hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence            345778899999999999999999999998    66665211                0 00111      112234445


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 008780          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKL  533 (554)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~  533 (554)
                      |.++..+|+|++|+..++++++.+|+++.+++.++.++...+++++|+..++++...+|.+ ... ..+..+........
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~-~~~-l~layL~~~~~~~~  186 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV-QNY-MTLSYLNRATDRNY  186 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch-HHH-HHHHHHHHhcchHH
Confidence            7799999999999999999999999999999999999999999999999999999999986 333 33333333222222


Q ss_pred             HHHHHHHHHhhccccccc
Q 008780          534 KVRLENSLKGCLTRSLGK  551 (554)
Q Consensus       534 ~~~~~~~y~~~f~~~~~~  551 (554)
                      ++-  ..|++++...|++
T Consensus       187 ~AL--~~~ekll~~~P~n  202 (822)
T PRK14574        187 DAL--QASSEAVRLAPTS  202 (822)
T ss_pred             HHH--HHHHHHHHhCCCC
Confidence            343  7899998887764

>TIGR00115 tig trigger factor

Probab=98.39  E-value=1.6e-06  Score=91.09  Aligned_cols=85  Identities=18%  Similarity=0.145  Sum_probs=72.5

Q ss_pred             CCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcce
Q 008780          168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE  247 (554)
Q Consensus       168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~~  247 (554)
                      .++.||.|+++|+++. +|..++++. +.++.|.+|.+.++|||+++|.||++|++++|.++....|+...    -++++
T Consensus       146 ~~~~gD~V~v~~~~~~-dg~~~~~~~-~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~----~~gk~  219 (408)
T TIGR00115       146 AAEKGDRVTIDFEGFI-DGEAFEGGK-AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEE----LAGKE  219 (408)
T ss_pred             ccCCCCEEEEEEEEEE-CCEECcCCC-CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCccc----CCCCe
Confidence            5788999999999965 888877653 57899999999999999999999999999999998766665432    25789


Q ss_pred             EEEEEeeeeee
Q 008780          248 VHFEVELVHLI  258 (554)
Q Consensus       248 l~~~v~l~~~~  258 (554)
                      +.|.|+|+++.
T Consensus       220 ~~f~v~i~~I~  230 (408)
T TIGR00115       220 ATFKVTVKEVK  230 (408)
T ss_pred             EEEEEEEEEec
Confidence            99999999995

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.37  E-value=2e-06  Score=67.62  Aligned_cols=73  Identities=22%  Similarity=0.292  Sum_probs=61.0

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      ..+..+...|..++..|+|++|+..|++|++......+.        ....+.++.|+|.||..+|++++|+.+++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--------HPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            457788999999999999999999999999974444322        122378999999999999999999999999997


Q ss_pred             h
Q 008780          476 A  476 (554)
Q Consensus       476 ~  476 (554)
                      +
T Consensus        75 i   75 (78)
T PF13424_consen   75 I   75 (78)
T ss_dssp             H
T ss_pred             h
Confidence            6

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.36  E-value=3.9e-06  Score=77.05  Aligned_cols=78  Identities=17%  Similarity=0.287  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~  523 (554)
                      ..+++++|.++...+++++|+.+|++++.+.|+.   ..+++.+|.++..+|++++|+..|+++++++|++ ......+.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg  113 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHH
Confidence            6789999999999999999999999999987653   5799999999999999999999999999999987 44444444


Q ss_pred             HH
Q 008780          524 KL  525 (554)
Q Consensus       524 ~l  525 (554)
                      .+
T Consensus       114 ~~  115 (172)
T PRK02603        114 VI  115 (172)
T ss_pred             HH
Confidence            33

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.35  E-value=2.4e-06  Score=66.16  Aligned_cols=70  Identities=26%  Similarity=0.455  Sum_probs=63.9

Q ss_pred             hhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHH
Q 008780          405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL  484 (554)
Q Consensus       405 G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~  484 (554)
                      .+.+++.++|+.|+..+++++.    ++|.+           ..++.++|.|+.++|+|.+|+..++++++..|++..+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALE----LDPDD-----------PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHH----hCccc-----------chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence            4578899999999999999999    88887           78999999999999999999999999999999998887


Q ss_pred             HHHHH
Q 008780          485 YRRGM  489 (554)
Q Consensus       485 ~~~g~  489 (554)
                      ..++.
T Consensus        67 ~~~a~   71 (73)
T PF13371_consen   67 ALRAM   71 (73)
T ss_pred             HHHHh
Confidence            76654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.35  E-value=5.9e-06  Score=90.17  Aligned_cols=144  Identities=22%  Similarity=0.292  Sum_probs=114.5

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      .+.+.+.|..+|..|++..|...+.+|+..+......+  +.   ......+.+|+|.|+-.++++..|...|..++...
T Consensus       452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d--e~---~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh  526 (1018)
T KOG2002|consen  452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD--EG---KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH  526 (1018)
T ss_pred             HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc--cc---ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence            45678899999999999999999999998533211111  11   22336789999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhccc
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVR--LENSLKGCLTR  547 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~--~~~~y~~~f~~  547 (554)
                      |.+..++.|+|......++..+|...++.++.+|..| +.++..+..+..+.+..+.++  +...+++.+..
T Consensus       527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n-p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~  597 (1018)
T KOG2002|consen  527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN-PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK  597 (1018)
T ss_pred             chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC-cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence            9999999999987888899999999999999999988 789999998877776333333  22344444443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.32  E-value=1.5e-05  Score=81.41  Aligned_cols=117  Identities=15%  Similarity=0.159  Sum_probs=98.2

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      ....+-.+...+..++++.|...++..+.    ..|++           ..++.-++..+++.+++++|++.+++++.++
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~----~~P~N-----------~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~  370 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQPLIA----AQPDN-----------PYYLELAGDILLEANKAKEAIERLKKALALD  370 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence            44556667777788888888888887666    77877           5677778888999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      |+..-..+++|++++..|++.+|+..++..+.-+|++ +..+..|.+....+.
T Consensus       371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-p~~w~~LAqay~~~g  422 (484)
T COG4783         371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED-PNGWDLLAQAYAELG  422 (484)
T ss_pred             CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999988 778888888777665

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.31  E-value=4.2e-05  Score=63.11  Aligned_cols=110  Identities=20%  Similarity=0.347  Sum_probs=84.3

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-  476 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-  476 (554)
                      +-.....|...+..|.|.+|...|++|++.-..+.+...-+-.-+   -.-||.-|+.++.++|+|++++..+.++|.+ 
T Consensus         9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GF---DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF   85 (144)
T PF12968_consen    9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGF---DAFCHAGLSGALAGLGRYDECLQSADRALRYF   85 (144)
T ss_dssp             HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHH---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccH---HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            344556778888999999999999999997776655442222222   2568899999999999999999999999954 


Q ss_pred             ------CCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          477 ------NPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       477 ------~p~----~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                            +.+    +..+.|++|.++..+|+.++|+..|+++-+.
T Consensus        86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                  332    5778899999999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.30  E-value=1.3e-05  Score=87.54  Aligned_cols=137  Identities=16%  Similarity=0.199  Sum_probs=109.1

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      ...+.-.++.+|-.++|..+...+.-|+..    . .       ...+.+..++++|.||..+|+|++|..+|.+++..+
T Consensus       270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~----t-~-------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~  337 (1018)
T KOG2002|consen  270 PVALNHLANHFYFKKDYERVWHLAEHAIKN----T-E-------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD  337 (1018)
T ss_pred             cHHHHHHHHHHhhcccHHHHHHHHHHHHHh----h-h-------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence            345567888899999999999999988872    1 1       123346789999999999999999999999999999


Q ss_pred             CCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-H-HHHHHHHHHHHHhhccc
Q 008780          478 PAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR-Q-VKLKVRLENSLKGCLTR  547 (554)
Q Consensus       478 p~~-~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~-~-~~~~~~~~~~y~~~f~~  547 (554)
                      +++ .-+++.+|+.++..|+++.|+.+|+++++..|++ .+....|..|.... + ..+.++...+..+....
T Consensus       338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~-~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~  409 (1018)
T KOG2002|consen  338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN-YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ  409 (1018)
T ss_pred             CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch-HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence            998 9999999999999999999999999999999998 67777888776655 2 22222222555555443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.30  E-value=3.6e-06  Score=83.77  Aligned_cols=134  Identities=18%  Similarity=0.259  Sum_probs=99.7

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC--CCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN--PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~--p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      ..+......+.+.+++.++...+.++..    ..  +.+           ..++..+|.++.+.|++++|+..+++++++
T Consensus       111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~-----------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~  175 (280)
T PF13429_consen  111 RYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAPDS-----------ARFWLALAEIYEQLGDPDKALRDYRKALEL  175 (280)
T ss_dssp             -------H-HHHTT-HHHHHHHHHHHHH-----T---T------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            3344555667788999999999888775    22  222           678999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      +|++..++..++.++...|++++|+..++...+..|++ +..+..+..+.......+++.  ..|.+.....|+
T Consensus       176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~-~~~~~~la~~~~~lg~~~~Al--~~~~~~~~~~p~  246 (280)
T PF13429_consen  176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD-PDLWDALAAAYLQLGRYEEAL--EYLEKALKLNPD  246 (280)
T ss_dssp             -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS-CCHCHHHHHHHHHHT-HHHHH--HHHHHHHHHSTT
T ss_pred             CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH-HHHHHHHHHHhcccccccccc--cccccccccccc
Confidence            99999999999999999999999999999988887776 457777777777666555555  777777776554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.28  E-value=1.7e-05  Score=83.76  Aligned_cols=126  Identities=21%  Similarity=0.255  Sum_probs=97.2

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-  476 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-  476 (554)
                      .......+..++.+|+|+.|...++.|++.+......+       ......+..++|..|+.+++|.+|+..|++||.+ 
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~-------hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~  271 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLK-------HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR  271 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCcc-------CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            44455599999999999999999999999754433322       1223455667999999999999999999999976 


Q ss_pred             -------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHHH
Q 008780          477 -------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK----SSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       477 -------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P----~~~~~~~~~l~~l~~~~~  530 (554)
                             +|.-+-++.++|.+|...|+|++|..++++|+++--    .+..++...|..+....+
T Consensus       272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~  336 (508)
T KOG1840|consen  272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ  336 (508)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH
Confidence                   456677899999999999999999999999999732    122456666555544433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.27  E-value=3.2e-05  Score=84.00  Aligned_cols=137  Identities=19%  Similarity=0.292  Sum_probs=109.9

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      ...+...|..+-++|+..+|+..+-.|..    ++|.+           ...|..++....+++++.+|+-+|.+||.++
T Consensus       173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAH----L~p~d-----------~e~W~~ladls~~~~~i~qA~~cy~rAI~~~  237 (895)
T KOG2076|consen  173 PIAYYTLGEIYEQRGDIEKALNFWLLAAH----LNPKD-----------YELWKRLADLSEQLGNINQARYCYSRAIQAN  237 (895)
T ss_pred             hhhHHHHHHHHHHcccHHHHHHHHHHHHh----cCCCC-----------hHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            45678899999999999999999999999    99998           4678888888899999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhccccccc
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ----VKLKVRLENSLKGCLTRSLGK  551 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~----~~~~~~~~~~y~~~f~~~~~~  551 (554)
                      |.+.+.+++++..|.++|++..|...|.+++.++|..  +.......+....+    ..+.++..+.+...+....+.
T Consensus       238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~--d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~  313 (895)
T KOG2076|consen  238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV--DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE  313 (895)
T ss_pred             CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Confidence            9999999999999999999999999999999999943  44444444444333    222233335555555544333

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.25  E-value=1.5e-05  Score=82.71  Aligned_cols=176  Identities=15%  Similarity=0.127  Sum_probs=124.8

Q ss_pred             chHHHHHHHhcCCcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccccCCCCCCCChhhhhHHHHHHHHhhhhh
Q 008780          329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRL  408 (554)
Q Consensus       329 v~~g~~~~l~~M~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~  408 (554)
                      .+.-|++++..|+.|....                     +.|.||.              ...+..+.++.++-.|..+
T Consensus       285 ~pdPf~eG~~lm~nG~L~~---------------------A~LafEA--------------AVkqdP~haeAW~~LG~~q  329 (579)
T KOG1125|consen  285 HPDPFKEGCNLMKNGDLSE---------------------AALAFEA--------------AVKQDPQHAEAWQKLGITQ  329 (579)
T ss_pred             CCChHHHHHHHHhcCCchH---------------------HHHHHHH--------------HHhhChHHHHHHHHhhhHh
Confidence            5677888888898887321                     1123321              2334466788888899988


Q ss_pred             hhcCCHHHHHHHHHHHHHHhhccCCCChhH-----------------------H--------------------------
Q 008780          409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEE-----------------------G--------------------------  439 (554)
Q Consensus       409 ~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee-----------------------~--------------------------  439 (554)
                      ...++=..|+..+++|++    ++|.+.+-                       |                          
T Consensus       330 aENE~E~~ai~AL~rcl~----LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~  405 (579)
T KOG1125|consen  330 AENENEQNAISALRRCLE----LDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFL  405 (579)
T ss_pred             hhccchHHHHHHHHHHHh----cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCC
Confidence            888888888888888888    77765420                       0                          


Q ss_pred             -----HHHhh------------hHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 008780          440 -----KVFVG------------KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR  502 (554)
Q Consensus       440 -----~~~~~------------~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~  502 (554)
                           ..+.+            .-..++.-||..|...++|++|+++++.||..+|++...|-|+|-++..-.+.++|+.
T Consensus       406 ~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIs  485 (579)
T KOG1125|consen  406 DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAIS  485 (579)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHH
Confidence                 00000            1123567788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008780          503 DFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLT  546 (554)
Q Consensus       503 ~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~  546 (554)
                      .|++||+|.|+- ..+|--|....-.+...+++.  ++|-..+.
T Consensus       486 AY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~--~hlL~AL~  526 (579)
T KOG1125|consen  486 AYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAV--KHLLEALS  526 (579)
T ss_pred             HHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHH--HHHHHHHH
Confidence            999999999986 334433443333333344443  45554443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.24  E-value=1.7e-05  Score=81.33  Aligned_cols=73  Identities=27%  Similarity=0.351  Sum_probs=64.6

Q ss_pred             hhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008780          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (554)
Q Consensus       393 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  472 (554)
                      .....+..+.++|..|++.|+|++|+..|++||+    ++|++.+.        ..+|+|+|.||.++|++++|+.++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALe----L~Pd~aeA--------~~A~yNLAcaya~LGr~dEAla~Lrr  137 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALE----LNPNPDEA--------QAAYYNKACCHAYREEGKKAADCLRT  137 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCchHH--------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4456788999999999999999999999999999    89987320        25699999999999999999999999


Q ss_pred             HHhhC
Q 008780          473 VLDAN  477 (554)
Q Consensus       473 al~~~  477 (554)
                      |+++.
T Consensus       138 ALels  142 (453)
T PLN03098        138 ALRDY  142 (453)
T ss_pred             HHHhc
Confidence            99983

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.24  E-value=2.2e-05  Score=74.19  Aligned_cols=102  Identities=19%  Similarity=0.257  Sum_probs=79.9

Q ss_pred             hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHH
Q 008780          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  483 (554)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka  483 (554)
                      ..+.+...|+-+.++..-.+++.    ..|.+           ..++.-++..+.+.|+|.+|+..+.++..++|++.++
T Consensus        72 ~a~a~~~~G~a~~~l~~~~~~~~----~~~~d-----------~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~  136 (257)
T COG5010          72 LATALYLRGDADSSLAVLQKSAI----AYPKD-----------RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA  136 (257)
T ss_pred             HHHHHHhcccccchHHHHhhhhc----cCccc-----------HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh
Confidence            44444555555555554444444    34444           3455558899999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 008780          484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA  520 (554)
Q Consensus       484 ~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~  520 (554)
                      |.-+|.+|.++|++++|...|.+|+++.|+++..+.+
T Consensus       137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nN  173 (257)
T COG5010         137 WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANN  173 (257)
T ss_pred             hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhh
Confidence            9999999999999999999999999999988544433

>PRK01490 tig trigger factor; Provisional

Probab=98.22  E-value=6.5e-06  Score=87.20  Aligned_cols=85  Identities=18%  Similarity=0.136  Sum_probs=71.1

Q ss_pred             CCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcce
Q 008780          168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE  247 (554)
Q Consensus       168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~~  247 (554)
                      .++.||.|+++|++.. +|..++++ .+.++.|.+|.++++|||+++|.||++|+++.|.++....|+...    -.+.+
T Consensus       157 ~~~~gD~V~vd~~~~~-~g~~~~~~-~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~----lagk~  230 (435)
T PRK01490        157 PAENGDRVTIDFVGSI-DGEEFEGG-KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAED----LAGKE  230 (435)
T ss_pred             cCCCCCEEEEEEEEEE-CCEECcCC-CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccccc----CCCCe
Confidence            4789999999999975 88877654 456899999999999999999999999999999987665564322    15689


Q ss_pred             EEEEEeeeeee
Q 008780          248 VHFEVELVHLI  258 (554)
Q Consensus       248 l~~~v~l~~~~  258 (554)
                      ..|.|.|.++.
T Consensus       231 ~~f~v~v~~V~  241 (435)
T PRK01490        231 ATFKVTVKEVK  241 (435)
T ss_pred             EEEEEEEEEec
Confidence            99999999995

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=3.5e-06  Score=87.89  Aligned_cols=82  Identities=17%  Similarity=0.206  Sum_probs=66.8

Q ss_pred             CCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEE--EEeCCccCCCCCCCCCCCcc
Q 008780          169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVI--YVTSQYLTPSPLMPVVEGCE  246 (554)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~--~v~~~~~~g~~~~~~ip~~~  246 (554)
                      .+.||.|+|+|.+ ..||..|.+. ..+.+.+.+|+|+++|||+++|.||+.|+.+.|  ++|.+|.-++-      .++
T Consensus       158 a~~gD~v~IDf~g-~iDg~~fegg-~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------aGK  229 (441)
T COG0544         158 AENGDRVTIDFEG-SVDGEEFEGG-KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------AGK  229 (441)
T ss_pred             cccCCEEEEEEEE-EEcCeeccCc-cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh------CCC
Confidence            7899999999999 7788877643 446789999999999999999999999999885  44445433322      567


Q ss_pred             eEEEEEeeeeee
Q 008780          247 EVHFEVELVHLI  258 (554)
Q Consensus       247 ~l~~~v~l~~~~  258 (554)
                      +..|.|.|..+.
T Consensus       230 ~a~F~V~vkeVk  241 (441)
T COG0544         230 EATFKVKVKEVK  241 (441)
T ss_pred             ceEEEEEEEEEe
Confidence            889999999985

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.22  E-value=1.6e-05  Score=89.53  Aligned_cols=125  Identities=12%  Similarity=0.140  Sum_probs=91.9

Q ss_pred             hhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHH
Q 008780          405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL  484 (554)
Q Consensus       405 G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~  484 (554)
                      |..+...|+|++|+..|+++++    .+|.+           ..++..++.++..++++++|+..+.+++..+|.+... 
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~----~dP~n-----------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-  172 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLK----KDPTN-----------PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-  172 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-
Confidence            4455577999999999999999    89988           4566788999999999999999999999999985554 


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcc
Q 008780          485 YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKGCLT  546 (554)
Q Consensus       485 ~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f~  546 (554)
                      ..++..+..++++.+|+..|+++++++|++. ++...+-.+-.... .....++.+.+..+|.
T Consensus       173 l~layL~~~~~~~~~AL~~~ekll~~~P~n~-e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~  234 (822)
T PRK14574        173 MTLSYLNRATDRNYDALQASSEAVRLAPTSE-EVLKNHLEILQRNRIVEPALRLAKENPNLVS  234 (822)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHhCccccC
Confidence            4445555557788779999999999999984 34333333323332 3333343344444454

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.22  E-value=3.1e-05  Score=79.74  Aligned_cols=113  Identities=22%  Similarity=0.165  Sum_probs=91.8

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHH--------------------HHh------hhHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK--------------------VFV------GKRNLLHL  451 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~--------------------~~~------~~~~~~~~  451 (554)
                      .+....++..++..|++++|+..++++++    ..|.+..-..                    .+.      ......+.
T Consensus        43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  118 (355)
T cd05804          43 RERAHVEALSAWIAGDLPKALALLEQLLD----DYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLG  118 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHH
Confidence            34455678899999999999999999998    5555432110                    000      01123556


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       452 nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ++|.++..+|++.+|+..++++++++|+++.++..+|.++...|++++|+..+++++.+.|.+
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~  181 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS  181 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence            889999999999999999999999999999999999999999999999999999999998753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.21  E-value=7.1e-06  Score=87.09  Aligned_cols=102  Identities=18%  Similarity=0.270  Sum_probs=91.8

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +.+.+..|+..+++++|.+|.++++.+++    ++|..           ...|+++|.|.++++++..|..+|.+++.++
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~----~nplq-----------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~  549 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLE----INPLQ-----------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLE  549 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhh----cCccc-----------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence            34455666777788999999999999999    77766           6789999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      |++..+|.+++.+|+.+++-.+|...++.|++-+-+|
T Consensus       550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~  586 (777)
T KOG1128|consen  550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH  586 (777)
T ss_pred             CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence            9999999999999999999999999999999987544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.17  E-value=0.00013  Score=64.92  Aligned_cols=98  Identities=21%  Similarity=0.355  Sum_probs=82.7

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      .......|..++..|+|++|+..|+.++.    ..++.        .+...+.+++|.|++.+++|++|+..++. +.-.
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~----~~~d~--------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~  114 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALA----NAPDP--------ELKPLARLRLARILLQQGQYDEALATLQQ-IPDE  114 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCH--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCc
Confidence            44567899999999999999999999998    44332        33466889999999999999999999966 3444


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMM  508 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al  508 (554)
                      +-.+.++..+|.++...|++++|+..|++||
T Consensus       115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  115 AFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            5567789999999999999999999999885

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=1.6e-05  Score=82.26  Aligned_cols=102  Identities=15%  Similarity=0.145  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDAN-------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT  519 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~  519 (554)
                      ..++..+|...+..+.|.+|+.+++.+++.-       +.+.-.+.++|.++..++.|++|+..|++||.+.|.+ ..+.
T Consensus       414 plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~-~~~~  492 (611)
T KOG1173|consen  414 PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD-ASTH  492 (611)
T ss_pred             chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc-hhHH
Confidence            4567888999999999999999999999432       1244568999999999999999999999999999998 6777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008780          520 AALSKLKKQRQVKLKVRLENSLKGCLTRSLGK  551 (554)
Q Consensus       520 ~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~~  551 (554)
                      ..+.-+...+..-+++.  ..|.|.+...|+.
T Consensus       493 asig~iy~llgnld~Ai--d~fhKaL~l~p~n  522 (611)
T KOG1173|consen  493 ASIGYIYHLLGNLDKAI--DHFHKALALKPDN  522 (611)
T ss_pred             HHHHHHHHHhcChHHHH--HHHHHHHhcCCcc
Confidence            77777777666444554  6677777666554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.17  E-value=4.7e-05  Score=73.84  Aligned_cols=139  Identities=14%  Similarity=0.193  Sum_probs=104.7

Q ss_pred             CCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH----------HhhccCCCChhHHHH---------------H
Q 008780          388 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR----------DFNHVNPQDDEEGKV---------------F  442 (554)
Q Consensus       388 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~----------~l~~~~p~~~ee~~~---------------~  442 (554)
                      +++++++   ...+.+.|..++..|-++.|...|....+          .+-.+--.+ .||++               .
T Consensus       100 dlT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~~~q~~  175 (389)
T COG2956         100 DLTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQAT-REWEKAIDVAERLVKLGGQTY  175 (389)
T ss_pred             CCchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCCccc
Confidence            3455443   56778889999999999999888876443          110000000 11111               1


Q ss_pred             hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008780          443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  522 (554)
Q Consensus       443 ~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l  522 (554)
                      .-..+.+|+.+|..++...+.+.|.....+|++.||+++.|-..+|.+++..|+|+.|++.++++++.||.--+++-..|
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L  255 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML  255 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            12245688999999999999999999999999999999999999999999999999999999999999998766666667


Q ss_pred             HHHHHHHH
Q 008780          523 SKLKKQRQ  530 (554)
Q Consensus       523 ~~l~~~~~  530 (554)
                      ..+...+.
T Consensus       256 ~~~Y~~lg  263 (389)
T COG2956         256 YECYAQLG  263 (389)
T ss_pred             HHHHHHhC
Confidence            66666555

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.16  E-value=3.6e-05  Score=78.66  Aligned_cols=113  Identities=27%  Similarity=0.316  Sum_probs=97.1

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      +-..+..++..++..+|.+.+++++.    +.|..           ..+..|+|.++++.|++.+|+...+..+.-+|++
T Consensus       343 ~~~~~~i~~~~nk~~~A~e~~~kal~----l~P~~-----------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d  407 (484)
T COG4783         343 LELAGDILLEANKAKEAIERLKKALA----LDPNS-----------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED  407 (484)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHh----cCCCc-----------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence            34677888999999999999999999    88887           6789999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (554)
Q Consensus       481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~  529 (554)
                      +..|..+|++|..+|+-.+|...+...+.+.-+- ..+...+...+++.
T Consensus       408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~-~~A~~~l~~A~~~~  455 (484)
T COG4783         408 PNGWDLLAQAYAELGNRAEALLARAEGYALAGRL-EQAIIFLMRASQQV  455 (484)
T ss_pred             chHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHhc
Confidence            9999999999999999999998888888887654 34444444444433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.16  E-value=2.7e-05  Score=76.14  Aligned_cols=102  Identities=16%  Similarity=0.151  Sum_probs=80.0

Q ss_pred             HHHHHHHHHH-HHccCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH--HHHH
Q 008780          448 LLHLNVAACL-LKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD--ATAA  521 (554)
Q Consensus       448 ~~~~nla~~~-~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~--~~~~  521 (554)
                      ...++.|.++ ++.++|++|+..|+..+...|++   +.++|.+|.+|+..|+|++|+..|++++...|++...  +...
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            5678888886 66799999999999999999988   5799999999999999999999999999999987432  2222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008780          522 LSKLKKQRQVKLKVRLENSLKGCLTRSLGK  551 (554)
Q Consensus       522 l~~l~~~~~~~~~~~~~~~y~~~f~~~~~~  551 (554)
                      +..+.......++++  +.|+++...+|++
T Consensus       223 lg~~~~~~g~~~~A~--~~~~~vi~~yP~s  250 (263)
T PRK10803        223 VGVIMQDKGDTAKAK--AVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHHHcCCHHHHH--HHHHHHHHHCcCC
Confidence            333333333445555  7888888777764

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=0.00011  Score=69.02  Aligned_cols=110  Identities=19%  Similarity=0.204  Sum_probs=75.4

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHH-----------------HHhhh------HHHHHHHHHHHH
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-----------------VFVGK------RNLLHLNVAACL  457 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~-----------------~~~~~------~~~~~~nla~~~  457 (554)
                      .+-.|..+-..|+|++|++.|...|+    -+|.+.--.+                 .+.+.      -..+|..+|..|
T Consensus        89 ~~lkam~lEa~~~~~~A~e~y~~lL~----ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY  164 (289)
T KOG3060|consen   89 GKLKAMLLEATGNYKEAIEYYESLLE----DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIY  164 (289)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhc----cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            34566667778899999999988877    5555531100                 00000      123667777778


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC
Q 008780          458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG---EFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       458 ~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~---~~~~A~~~~~~al~l~P~~  514 (554)
                      +.+++|.+|.-++++++-+.|.|+-.+-|+|..++.+|   +++-|+++|.+|++++|.+
T Consensus       165 ~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~  224 (289)
T KOG3060|consen  165 LSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN  224 (289)
T ss_pred             HhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence            88888888888888888788877777777777777765   5667777888888877754

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.11  E-value=0.00016  Score=64.23  Aligned_cols=112  Identities=18%  Similarity=0.112  Sum_probs=87.3

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc-----C--CCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-----N--PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  470 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~-----~--p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  470 (554)
                      -..+...|......++...++..|.+|+.....-     .  ++-......+......++..++.++...+++.+|+..|
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            3445566777778889999999999999865321     1  11122345566777888999999999999999999999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780          471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (554)
Q Consensus       471 ~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~  509 (554)
                      .+++..+|.+..+|..+-.+|..+|++.+|++.|+++.+
T Consensus        86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK11906 transcriptional regulator; Provisional

Probab=98.11  E-value=4.2e-05  Score=78.51  Aligned_cols=104  Identities=14%  Similarity=0.088  Sum_probs=78.3

Q ss_pred             HHhhhhhhhcC---CHHHHHHHHHHHH---HHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc---------cCHHHH
Q 008780          402 RVTGNRLFKEG---KFELAKAKYEKVL---RDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL---------GECRKS  466 (554)
Q Consensus       402 ~~~G~~~~~~g---~~~~A~~~Y~~al---~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl---------~~~~~A  466 (554)
                      .-+|..++.++   ....|+.++.+|+   .    ++|..           ..+|.-+|.||+.+         ..-.+|
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~----ldp~~-----------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a  323 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSD----IQTLK-----------TECYCLLAECHMSLALHGKSELELAAQKA  323 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhccc----CCccc-----------HHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence            45555554333   4577888899999   5    66665           66777778887765         235678


Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008780          467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA  521 (554)
Q Consensus       467 ~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~  521 (554)
                      ...+++|+++||.++.|++.+|.++...++++.|...|++|+.++|+. ..+.-.
T Consensus       324 ~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~-A~~~~~  377 (458)
T PRK11906        324 LELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI-ASLYYY  377 (458)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc-HHHHHH
Confidence            888888888899999999999998888888888999999999998886 444433

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.09  E-value=7.6e-05  Score=80.16  Aligned_cols=113  Identities=15%  Similarity=0.143  Sum_probs=85.2

Q ss_pred             HHHHHHhhhhhhhcC---CHHHHHHHHHHHHHHhhccCCCChh---------------------HHHHH----h------
Q 008780          398 AEKIRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVNPQDDE---------------------EGKVF----V------  443 (554)
Q Consensus       398 a~~~~~~G~~~~~~g---~~~~A~~~Y~~al~~l~~~~p~~~e---------------------e~~~~----~------  443 (554)
                      |-.+.-+|..++.+.   .+..|+.+|++|++    ++|+...                     .....    .      
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~----ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~  414 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILK----SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP  414 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence            555666777776544   48899999999998    6665421                     00000    0      


Q ss_pred             --hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780          444 --GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       444 --~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~  515 (554)
                        .....+|.-+|..+...+++++|...+++|++++| +..+|..+|.++...|++++|++.|++|+.++|.++
T Consensus       415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence              01124566777888888999999999999999999 578999999999999999999999999999999873

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.06  E-value=4.2e-05  Score=78.77  Aligned_cols=100  Identities=17%  Similarity=0.235  Sum_probs=88.3

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      ...+...|..+...|++.+|+..|++++.    +.|.+           ..++.++|.++...|++++|+.++.+++...
T Consensus       114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~  178 (355)
T cd05804         114 WYLLGMLAFGLEEAGQYDRAEEAARRALE----LNPDD-----------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTW  178 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCC-----------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence            34555778899999999999999999999    88887           6788999999999999999999999999988


Q ss_pred             CCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780          478 PAHV----KGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (554)
Q Consensus       478 p~~~----ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P  512 (554)
                      |.+.    ..++.+|.++..+|++++|+..|++++...|
T Consensus       179 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         179 DCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             CCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            7432    3567899999999999999999999987776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.03  E-value=8.2e-06  Score=52.82  Aligned_cols=33  Identities=30%  Similarity=0.632  Sum_probs=23.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                      +++|+++|.++..++++++|+.+|++|++++|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            356777777777777777777777777777775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=0.00015  Score=72.41  Aligned_cols=135  Identities=12%  Similarity=0.079  Sum_probs=96.0

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCH-------------
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC-------------  463 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~-------------  463 (554)
                      ..+.+.-+|+.+...++..+|+-.|+.|..    +.|.+           ..+|-.+-.||+..+++             
T Consensus       333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~----Lap~r-----------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~  397 (564)
T KOG1174|consen  333 NHEALILKGRLLIALERHTQAVIAFRTAQM----LAPYR-----------LEIYRGLFHSYLAQKRFKEANALANWTIRL  397 (564)
T ss_pred             cchHHHhccHHHHhccchHHHHHHHHHHHh----cchhh-----------HHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            355678899999999999999999999998    66654           34455555555544444             


Q ss_pred             -----------------------HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 008780          464 -----------------------RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA  520 (554)
Q Consensus       464 -----------------------~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~  520 (554)
                                             ++|..+++++|.++|.+.+|-..+|..+...|+++++++.++++|...|+.  ..+.
T Consensus       398 ~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--~LH~  475 (564)
T KOG1174|consen  398 FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--NLHN  475 (564)
T ss_pred             hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc--HHHH
Confidence                                   445555555556678888888888888888888888888888888888774  4666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          521 ALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       521 ~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      .|..+-...+..+++-  ..|.+.++..|.
T Consensus       476 ~Lgd~~~A~Ne~Q~am--~~y~~ALr~dP~  503 (564)
T KOG1174|consen  476 HLGDIMRAQNEPQKAM--EYYYKALRQDPK  503 (564)
T ss_pred             HHHHHHHHhhhHHHHH--HHHHHHHhcCcc
Confidence            6666666665344443  567777766654

>TIGR00540 hemY_coli hemY protein

Probab=98.02  E-value=0.00034  Score=73.65  Aligned_cols=106  Identities=12%  Similarity=0.087  Sum_probs=64.0

Q ss_pred             hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (554)
Q Consensus       394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (554)
                      +...+.....+|-..+..|+|..|.+...++.+    ..|..           ...+.-.|.++..+|+++.|..++.++
T Consensus        80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~----~~~~~-----------~~~~llaA~aa~~~g~~~~A~~~l~~a  144 (409)
T TIGR00540        80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNAD----HAAEP-----------VLNLIKAAEAAQQRGDEARANQHLEEA  144 (409)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhh----cCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            455677888899999999999999999998888    44443           223334444555555555555555555


Q ss_pred             HhhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          474 LDANPAHV-KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       474 l~~~p~~~-ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      .+..|++. .+...++..+...++++.|+..++++++.+|+|
T Consensus       145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~  186 (409)
T TIGR00540       145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRH  186 (409)
T ss_pred             HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            55544443 233334555555555555555555555555554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.01  E-value=0.00013  Score=70.89  Aligned_cols=120  Identities=19%  Similarity=0.218  Sum_probs=103.8

Q ss_pred             hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (554)
Q Consensus       394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (554)
                      .++.|.-+.+.+..+....+++.|+....+|+.    .+|..           +.+-.-+|..++..|+|..|++.++.+
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq----a~~~c-----------vRAsi~lG~v~~~~g~y~~AV~~~e~v  240 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQ----ADKKC-----------VRASIILGRVELAKGDYQKAVEALERV  240 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh----hCccc-----------eehhhhhhHHHHhccchHHHHHHHHHH
Confidence            456778888999999999999999999999999    77776           667788899999999999999999999


Q ss_pred             HhhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          474 LDANPAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       474 l~~~p~~-~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      ++.||.+ ..++-.+..||..+|+.++.+..+.++.+..++.  ++...+..+...+.
T Consensus       241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~--~~~l~l~~lie~~~  296 (389)
T COG2956         241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA--DAELMLADLIELQE  296 (389)
T ss_pred             HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--cHHHHHHHHHHHhh
Confidence            9999987 5678889999999999999999999999998874  45556666655555

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.01  E-value=9.4e-05  Score=82.86  Aligned_cols=101  Identities=16%  Similarity=0.078  Sum_probs=65.8

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      ....+......+...+++++|+.....+++    ..|..           ..+|+.+|..+++.+++.+|...  .++..
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~----~~P~~-----------i~~yy~~G~l~~q~~~~~~~~lv--~~l~~   92 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLK----EHKKS-----------ISALYISGILSLSRRPLNDSNLL--NLIDS   92 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCcc-----------eehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence            345566777777788999999999888888    56655           45555555555555554444433  33333


Q ss_pred             C-------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          477 N-------------------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       477 ~-------------------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      -                   +++-.|++.+|.||-.+|++++|.+.|+++|+++|+|
T Consensus        93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n  149 (906)
T PRK14720         93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN  149 (906)
T ss_pred             cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc
Confidence            3                   3333677777777777777777777777777777766

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.00  E-value=0.00033  Score=62.89  Aligned_cols=111  Identities=18%  Similarity=0.287  Sum_probs=93.9

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      .+.....|+.+...|++.+|..+|++++.=   +...|           ..+++.+|.+++..+++..|....+.+.+.+
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG---~fA~d-----------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~  154 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSG---IFAHD-----------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN  154 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhcc---ccCCC-----------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence            344567899999999999999999999872   33344           6788999999999999999999999999999


Q ss_pred             CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780          478 PA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (554)
Q Consensus       478 p~--~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~  524 (554)
                      |.  .+..+...|.++..+|++.+|...|+.++..-|+-  ..+.....
T Consensus       155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~--~ar~~Y~e  201 (251)
T COG4700         155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP--QARIYYAE  201 (251)
T ss_pred             CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH--HHHHHHHH
Confidence            84  67888999999999999999999999999999874  34444433

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=98.00  E-value=4.3e-05  Score=76.32  Aligned_cols=115  Identities=11%  Similarity=0.253  Sum_probs=94.1

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc----CCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  470 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~----~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  470 (554)
                      -++.+.....|..+|++++|..|+-.|+-||+++..-    .|.. .+...+.....-+...+..||+++++.+-|+.+.
T Consensus       173 Dkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~-~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~  251 (569)
T PF15015_consen  173 DKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFK-ASAEDISSVASFIETKLVTCYLRMRKPDLALNHS  251 (569)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCC-CChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence            3455666778899999999999999999999987652    1221 1222334444567789999999999999999999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       471 ~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      .+.+.++|.+..-|.++|.|+..|.+|.+|.+.+..|.-+
T Consensus       252 hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym  291 (569)
T PF15015_consen  252 HRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM  291 (569)
T ss_pred             hhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999887776553

>TIGR00540 hemY_coli hemY protein

Probab=97.97  E-value=8.6e-05  Score=78.13  Aligned_cols=133  Identities=18%  Similarity=0.041  Sum_probs=101.7

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      ........+..+...|++++|....+++++    ..|++...         ....-+....+..++...++..++++++.
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~----~~pd~~~~---------~~~~l~~~~~l~~~~~~~~~~~~e~~lk~  328 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLK----KLGDDRAI---------SLPLCLPIPRLKPEDNEKLEKLIEKQAKN  328 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHh----hCCCcccc---------hhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence            456677888999999999999999999999    77766210         00112222334457889999999999999


Q ss_pred             CCCCh--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008780          477 NPAHV--KGLYRRGMAYMALGEFEEAQRDFE--MMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLT  546 (554)
Q Consensus       477 ~p~~~--ka~~~~g~a~~~l~~~~~A~~~~~--~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~  546 (554)
                      +|+++  ..+..+|..++..++|++|++.|+  ++++.+|++ .. ...+..+..+....++++  ..|++.+.
T Consensus       329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~-~~~La~ll~~~g~~~~A~--~~~~~~l~  398 (409)
T TIGR00540       329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-ND-LAMAADAFDQAGDKAEAA--AMRQDSLG  398 (409)
T ss_pred             CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HH-HHHHHHHHHHcCCHHHHH--HHHHHHHH
Confidence            99999  888899999999999999999999  688899986 33 446777766666445555  67776543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.95  E-value=0.00048  Score=72.21  Aligned_cols=120  Identities=10%  Similarity=0.070  Sum_probs=78.4

Q ss_pred             hhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHH-HHHHHHccCHHHHHHHHH
Q 008780          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNV-AACLLKLGECRKSIEACN  471 (554)
Q Consensus       393 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nl-a~~~~kl~~~~~A~~~~~  471 (554)
                      .+.+.+......|-..+..|+|..|.+...++-+    ..+ .           ..+++.+ +.+..++|+++.|..++.
T Consensus        79 rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~----~~~-~-----------p~l~~llaA~aA~~~g~~~~A~~~l~  142 (398)
T PRK10747         79 RKRRRARKQTEQALLKLAEGDYQQVEKLMTRNAD----HAE-Q-----------PVVNYLLAAEAAQQRGDEARANQHLE  142 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----ccc-c-----------hHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3455677778888888889999988877766555    211 1           2233333 444477777777777777


Q ss_pred             HHHhhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780          472 KVLDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (554)
Q Consensus       472 ~al~~~p~~~k-a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~  529 (554)
                      ++.+.+|++.- .....+..+...|+++.|+..++++++.+|+| ..+...+..+..+.
T Consensus       143 ~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~-~~al~ll~~~~~~~  200 (398)
T PRK10747        143 RAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRH-PEVLRLAEQAYIRT  200 (398)
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHH
Confidence            77777777643 33445777777777777777777777777777 44444444444333

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=2.5e-06  Score=79.28  Aligned_cols=83  Identities=23%  Similarity=0.303  Sum_probs=73.5

Q ss_pred             cccCCCCeEEEEEecCCCCC-CCCCCCEEEEEEEEEecC--CcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCC
Q 008780           24 MKIVPGSLMKAVMRPGGGDS-TPSDGDQVAYHCTVRTLD--GVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML  100 (554)
Q Consensus        24 ~~~~~~g~~~~~~~~G~g~~-~~~~gd~V~~~y~~~~~~--g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~  100 (554)
                      ..+...||.++|+..|.|.- ....|..|.+||.....+  ++++|+|+.    .++|+.+++|...-++-|+..|..|.
T Consensus         5 a~l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk----~gkPmeiiiGkkFkL~VwE~il~tM~   80 (329)
T KOG0545|consen    5 ALLNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK----VGKPMEIIIGKKFKLEVWEIILTTMR   80 (329)
T ss_pred             hhccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhh----cCCCeEEeeccccccHHHHHHHHHHh
Confidence            34567899999999999984 357899999999998754  789999997    78999999999999999999999999


Q ss_pred             CCcEEEEEEe
Q 008780          101 KGEVSMFKMK  110 (554)
Q Consensus       101 ~Ge~~~~~ip  110 (554)
                      ++|.+.|++.
T Consensus        81 v~EvaqF~~d   90 (329)
T KOG0545|consen   81 VHEVAQFWCD   90 (329)
T ss_pred             hhhHHHhhhh
Confidence            9999988764

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.92  E-value=2.3e-05  Score=50.54  Aligned_cols=34  Identities=35%  Similarity=0.612  Sum_probs=26.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +++|+.+|.+++.+|+|++|+.+|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4678888888888888888888888888888864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.91  E-value=0.00012  Score=77.00  Aligned_cols=115  Identities=14%  Similarity=0.120  Sum_probs=95.7

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  479 (554)
                      .+..+...+|..++|...+..-+..|.    -.|.+           ...+.-.|..+..+|+-++|...+..++..|+.
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~----k~~eH-----------geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~   73 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILK----KFPEH-----------GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK   73 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHH----hCCcc-----------chhHHhccchhhcccchHHHHHHHHHHhccCcc
Confidence            456677777888888888888888777    56666           334555677777899999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      +.-+|.-+|..+..-.+|++|+++|+.||.++|+| ..+...|..|+..++
T Consensus        74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN-~qilrDlslLQ~QmR  123 (700)
T KOG1156|consen   74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN-LQILRDLSLLQIQMR  123 (700)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998 667777777766655

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.91  E-value=1.1e-05  Score=52.25  Aligned_cols=34  Identities=24%  Similarity=0.457  Sum_probs=31.8

Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 008780          469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR  502 (554)
Q Consensus       469 ~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~  502 (554)
                      +|++||+++|+|+.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999999973

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.90  E-value=0.00011  Score=71.43  Aligned_cols=97  Identities=15%  Similarity=0.196  Sum_probs=83.5

Q ss_pred             HHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCh
Q 008780          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (554)
Q Consensus       402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~  481 (554)
                      .+.|.++++.|-+.+|.+.++.+|.    ..|.            ...+..|+.+|.+..+...|+..+.+.+..-|.++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~----q~~~------------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V  290 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLT----QFPH------------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV  290 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhh----cCCc------------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh
Confidence            4789999999999999999999998    4443            45677788888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       482 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ..+.-.+++|..++++++|.+.|+.+++++|.|
T Consensus       291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n  323 (478)
T KOG1129|consen  291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN  323 (478)
T ss_pred             hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence            888888888888888888888888888888876

>PRK11906 transcriptional regulator; Provisional

Probab=97.89  E-value=9e-05  Score=76.14  Aligned_cols=89  Identities=12%  Similarity=0.034  Sum_probs=81.9

Q ss_pred             cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (554)
Q Consensus       411 ~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  490 (554)
                      ...-.+|.+.-++|++    +++.|           ..++..+|.++...++++.|+..+++|+.++|+++.+||.+|..
T Consensus       317 ~~~~~~a~~~A~rAve----ld~~D-----------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~  381 (458)
T PRK11906        317 ELAAQKALELLDYVSD----ITTVD-----------GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV  381 (458)
T ss_pred             hHHHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence            3455677888888888    88888           78999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          491 YMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       491 ~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +...|+.++|++.+++|++++|.-
T Consensus       382 ~~~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        382 HFHNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             HHHcCCHHHHHHHHHHHhccCchh
Confidence            999999999999999999999974

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.89  E-value=2.6e-05  Score=62.25  Aligned_cols=80  Identities=24%  Similarity=0.360  Sum_probs=61.6

Q ss_pred             ccCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008780          460 LGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRL  537 (554)
Q Consensus       460 l~~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~  537 (554)
                      .++|+.|+..++++++.+|.  +...++.+|.|++.+|+|++|+..+++ ++.+|.+ ....-.+..+...+...+++. 
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi-   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAI-   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHH-
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHH-
Confidence            58999999999999999995  567888899999999999999999999 8888876 455556666555555444444 


Q ss_pred             HHHHHh
Q 008780          538 ENSLKG  543 (554)
Q Consensus       538 ~~~y~~  543 (554)
                       +.|.+
T Consensus        79 -~~l~~   83 (84)
T PF12895_consen   79 -KALEK   83 (84)
T ss_dssp             -HHHHH
T ss_pred             -HHHhc
Confidence             45543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.89  E-value=9.1e-05  Score=76.28  Aligned_cols=93  Identities=22%  Similarity=0.266  Sum_probs=78.6

Q ss_pred             HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChH
Q 008780          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (554)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k  482 (554)
                      -.+..++..++-.+|++...+++.    ..|.+           ..++...|..+++.++|+.|+..++++..+.|.+.+
T Consensus       205 ~LA~v~l~~~~E~~AI~ll~~aL~----~~p~d-----------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~  269 (395)
T PF09295_consen  205 LLARVYLLMNEEVEAIRLLNEALK----ENPQD-----------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFE  269 (395)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHH
Confidence            355666667777888888888887    67766           667888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          483 GLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       483 a~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      +|+.++.+|..+|+|++|+..++.+-.+
T Consensus       270 ~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  270 TWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            9999999999999999999888755544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.88  E-value=0.00011  Score=73.05  Aligned_cols=110  Identities=18%  Similarity=0.232  Sum_probs=86.3

Q ss_pred             HHHHHHHHhhhhhhhc-CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          396 DEAEKIRVTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~-g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      ..+..+...|..+... ++++.|+.+|++|++++.....         ......++.++|.++.++++|.+|+..++++.
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~  182 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---------PHSAAECLLKAADLYARLGRYEEAIEIYEEVA  182 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3577788889999998 9999999999999997665331         12236789999999999999999999999988


Q ss_pred             hhCCC------ChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          475 DANPA------HVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       475 ~~~p~------~~k-a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ...-+      +++ .+++.+.|++..|++..|...|++....+|.-
T Consensus       183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            75321      344 45788899999999999999999999999843

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.84  E-value=0.0001  Score=73.34  Aligned_cols=106  Identities=18%  Similarity=0.217  Sum_probs=81.6

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      .+.+..+..-|+.+-..++|.+|..+|.+|.++.......         .....+|.+.+.||.+. ++.+|+.++++|+
T Consensus        32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~---------~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~  101 (282)
T PF14938_consen   32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK---------FEAAKAYEEAANCYKKG-DPDEAIECYEKAI  101 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Confidence            3456666777787778999999999999999865543221         12256788889998777 9999999999999


Q ss_pred             hhC--C----CChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 008780          475 DAN--P----AHVKGLYRRGMAYMAL-GEFEEAQRDFEMMMKV  510 (554)
Q Consensus       475 ~~~--p----~~~ka~~~~g~a~~~l-~~~~~A~~~~~~al~l  510 (554)
                      .+-  .    .-++++.++|.+|... +++++|+..|++|+++
T Consensus       102 ~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~  144 (282)
T PF14938_consen  102 EIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL  144 (282)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            863  1    2377899999999998 9999999999999997

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.84  E-value=0.00026  Score=74.19  Aligned_cols=128  Identities=14%  Similarity=0.069  Sum_probs=99.0

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      ........+..+...|+.+.|.....++++    ..++.            .+..-.+  ++..+++.+++..+++.++.
T Consensus       262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~----~~~~~------------~l~~l~~--~l~~~~~~~al~~~e~~lk~  323 (398)
T PRK10747        262 QVALQVAMAEHLIECDDHDTAQQIILDGLK----RQYDE------------RLVLLIP--RLKTNNPEQLEKVLRQQIKQ  323 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCH------------HHHHHHh--hccCCChHHHHHHHHHHHhh
Confidence            344556778889999999999999999888    43322            1222222  22459999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLT  546 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~  546 (554)
                      +|+++..++.+|+.++..++|++|++.|+++++++|++  .....+..+..+....+++.  .+|++-+.
T Consensus       324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~--~~~~~La~~~~~~g~~~~A~--~~~~~~l~  389 (398)
T PRK10747        324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA--YDYAWLADALDRLHKPEEAA--AMRRDGLM  389 (398)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHcCCHHHHH--HHHHHHHh
Confidence            99999999999999999999999999999999999986  33446777766665444444  67777654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.0005  Score=66.77  Aligned_cols=118  Identities=15%  Similarity=0.057  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008780          414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA  493 (554)
Q Consensus       414 ~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~  493 (554)
                      .+..+...+..|.    .+|.|           ..-|.-||.+|+.++++..|...|.+|+++.|+|+..+.-+|.+++.
T Consensus       138 ~~~l~a~Le~~L~----~nP~d-----------~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~  202 (287)
T COG4235         138 MEALIARLETHLQ----QNPGD-----------AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYY  202 (287)
T ss_pred             HHHHHHHHHHHHH----hCCCC-----------chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4455555666666    78888           66788899999999999999999999999999999999999999987


Q ss_pred             cC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780          494 LG---EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       494 l~---~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      ..   .-.+|...|++|+.+||+| ..+...|..-.......+.+.  ..++.|+...|
T Consensus       203 ~a~~~~ta~a~~ll~~al~~D~~~-iral~lLA~~afe~g~~~~A~--~~Wq~lL~~lp  258 (287)
T COG4235         203 QAGQQMTAKARALLRQALALDPAN-IRALSLLAFAAFEQGDYAEAA--AAWQMLLDLLP  258 (287)
T ss_pred             hcCCcccHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHcccHHHHH--HHHHHHHhcCC
Confidence            64   5678999999999999998 556666665544444444554  67888877543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.80  E-value=3.5e-05  Score=49.81  Aligned_cols=33  Identities=18%  Similarity=0.430  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      .+|+++|.||..+++|++|+.+|++||+++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            579999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.80  E-value=7.8e-05  Score=80.39  Aligned_cols=114  Identities=30%  Similarity=0.534  Sum_probs=102.2

Q ss_pred             ChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc--cCHHHHH
Q 008780          390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--GECRKSI  467 (554)
Q Consensus       390 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl--~~~~~A~  467 (554)
                      +....+..+..++..||.+|++++|..|.-.|..++.    +.|.+       ......++.|.+.|++.+  ++|..++
T Consensus        45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~----llp~~-------~~~~a~~~~~~~s~~m~~~l~~~~~~~  113 (748)
T KOG4151|consen   45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIK----LLPKD-------HHVVATLRSNQASCYMQLGLGEYPKAI  113 (748)
T ss_pred             chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhhe----ecccc-------chhhhhHHHHHHHHHhhcCccchhhhc
Confidence            5667788999999999999999999999999999999    55533       122367889999999875  6899999


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       468 ~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ..|.-|+...|...+++++++.+|..+++++-|++++.-....+|++
T Consensus       114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~  160 (748)
T KOG4151|consen  114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN  160 (748)
T ss_pred             CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            99999999999999999999999999999999999999999999998

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.77  E-value=0.0001  Score=78.48  Aligned_cols=95  Identities=17%  Similarity=0.196  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ..+...+|...+..++|.+|.++++..++++|-....||++|.|..+++++..|..+|.+++.++|+| .++++-|....
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~-~eaWnNls~ay  563 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN-AEAWNNLSTAY  563 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc-hhhhhhhhHHH
Confidence            34445555556667999999999999999999999999999999999999999999999999999998 67888887776


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 008780          527 KQRQVKLKVRLENSLKGC  544 (554)
Q Consensus       527 ~~~~~~~~~~~~~~y~~~  544 (554)
                      -+..+.+++.  ..++..
T Consensus       564 i~~~~k~ra~--~~l~EA  579 (777)
T KOG1128|consen  564 IRLKKKKRAF--RKLKEA  579 (777)
T ss_pred             HHHhhhHHHH--HHHHHH
Confidence            6666444444  444444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.75  E-value=0.00044  Score=74.23  Aligned_cols=127  Identities=15%  Similarity=0.150  Sum_probs=105.7

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      +...+..+.+.++-++|..+..+|-.    +.|..           +..|+.+|.++...+++.+|...+..|+.+||++
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~----~~~l~-----------~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h  717 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASK----IDPLS-----------ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH  717 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHh----cchhh-----------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence            34455555566777788888888877    55544           7889999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008780          481 VKGLYRRGMAYMALGEFEEAQR--DFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCL  545 (554)
Q Consensus       481 ~ka~~~~g~a~~~l~~~~~A~~--~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f  545 (554)
                      +.+..-+|.++...|+...|..  .+..|+++||.| .++|..|..+-+++...+.+.  ..|....
T Consensus       718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n-~eaW~~LG~v~k~~Gd~~~Aa--ecf~aa~  781 (799)
T KOG4162|consen  718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN-HEAWYYLGEVFKKLGDSKQAA--ECFQAAL  781 (799)
T ss_pred             cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHccchHHHH--HHHHHHH
Confidence            9999999999999999888888  999999999999 789999999888777444444  5555543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.75  E-value=0.0018  Score=61.62  Aligned_cols=106  Identities=19%  Similarity=0.292  Sum_probs=88.3

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+.+.|...++.|+|.+|+..|++...    ..|.++-        ...+...++.+++|.++|++|+...++-+.+.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~----~~p~s~~--------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly  101 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDS----RHPFSPY--------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY  101 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCcc--------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            66788999999999999999999999887    6676532        14677889999999999999999999999999


Q ss_pred             CCChH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCh
Q 008780          478 PAHVK---GLYRRGMAYMAL--------GEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       478 p~~~k---a~~~~g~a~~~l--------~~~~~A~~~~~~al~l~P~~~  515 (554)
                      |.++.   ++|.+|.+++..        .--.+|+..|+..+.--|++.
T Consensus       102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105         102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence            87654   788899998764        223677888999999999873

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.73  E-value=0.00031  Score=59.90  Aligned_cols=66  Identities=18%  Similarity=0.168  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~---~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                      .+++++|.++-.+|+.++|+..|+++++....   -..++..+|.++..+|++++|+..|++++.-.|+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            36899999999999999999999999997543   3679999999999999999999999999999887

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.71  E-value=0.00033  Score=67.16  Aligned_cols=99  Identities=24%  Similarity=0.263  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          450 HLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       450 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      .+|.|.-+++.|+|..|...+..-+...|++   +.|+|++|++++.+|+|++|...|..+.+-.|++.. +-..|-+|-
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~K-ApdallKlg  222 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK-APDALLKLG  222 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCC-ChHHHHHHH
Confidence            7899999999999999999999999999976   669999999999999999999999999999998843 323333333


Q ss_pred             ---HHHHHHHHHHHHHHHHhhccccccc
Q 008780          527 ---KQRQVKLKVRLENSLKGCLTRSLGK  551 (554)
Q Consensus       527 ---~~~~~~~~~~~~~~y~~~f~~~~~~  551 (554)
                         .++...+.++  ..|..+..++|+.
T Consensus       223 ~~~~~l~~~d~A~--atl~qv~k~YP~t  248 (262)
T COG1729         223 VSLGRLGNTDEAC--ATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHHhcCHHHHH--HHHHHHHHHCCCC
Confidence               3333445555  7888888887763

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.71  E-value=9.4e-05  Score=50.98  Aligned_cols=32  Identities=25%  Similarity=0.341  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       483 a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +++.+|.+|..+|++++|++.|+++++.+|+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            44445555555555555555555555555544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.69  E-value=9.9e-05  Score=50.88  Aligned_cols=43  Identities=14%  Similarity=0.155  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (554)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  490 (554)
                      .+++.+|.+|..+|++++|+..++++++.+|+|+.+++.+|.+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            3688999999999999999999999999999999999998863

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.69  E-value=0.0007  Score=61.47  Aligned_cols=95  Identities=16%  Similarity=0.168  Sum_probs=69.5

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          453 VAACLLKLGECRKSIEACNKVLDANPAH-----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~al~~~p~~-----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      -|.-+++.|+|.+|...|..||++-|..     .-.|.++|.|++.++.++.|+.+..+|++|+|.+.. +......+..
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k-Al~RRAeaye  179 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK-ALERRAEAYE  179 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH-HHHHHHHHHH
Confidence            3555778999999999999999999864     347889999999999999999999999999998732 2222222333


Q ss_pred             HHHHHHHHHHHHHHHhhcccccc
Q 008780          528 QRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       528 ~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      ++...+.+-  .-|++++...|.
T Consensus       180 k~ek~eeal--eDyKki~E~dPs  200 (271)
T KOG4234|consen  180 KMEKYEEAL--EDYKKILESDPS  200 (271)
T ss_pred             hhhhHHHHH--HHHHHHHHhCcc
Confidence            333233333  567777766553

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.69  E-value=0.00028  Score=75.82  Aligned_cols=36  Identities=14%  Similarity=0.138  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k  482 (554)
                      ...|..+|.++...|++++|+..+.+|+.++|.++.
T Consensus       453 ~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        453 WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            468899999999999999999999999999999885

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.62  E-value=0.00015  Score=70.75  Aligned_cols=63  Identities=21%  Similarity=0.342  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780          450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (554)
Q Consensus       450 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P  512 (554)
                      +-..|.-|+++|.|++||++|.+++.++|.|+-.+-+||.||+.+.+|..|..+...|+.||-
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~  162 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK  162 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence            346788999999999999999999999999999999999999999999999999999999985

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.60  E-value=0.00074  Score=72.27  Aligned_cols=74  Identities=16%  Similarity=0.190  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 008780          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA  520 (554)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~  520 (554)
                      ...+++.+|.+|..+|++++|+.+.++||+..|..+..|+.+|+++-..|++.+|...++.|..+|+.| .-+..
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D-RyiNs  266 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD-RYINS  266 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh-HHHHH
Confidence            345788999999999999999999999999999999999999999999999999999999999999987 33433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.59  E-value=0.00098  Score=64.67  Aligned_cols=70  Identities=13%  Similarity=0.096  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG---LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP  516 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka---~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~  516 (554)
                      ...++..|.-++..|+|++|+..+++++...|....+   .+.+|.+|+.+++|++|+..|++.++++|+|+.
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~  104 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN  104 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence            4557788999999999999999999999999987655   599999999999999999999999999999853

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.58  E-value=0.0013  Score=66.54  Aligned_cols=75  Identities=15%  Similarity=0.111  Sum_probs=51.4

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       452 nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      -||..|+...=|++|+.++++|--+.|+-.|.-...+.|+.+.|+|..|...|+...+--|.+ .+..+.|-++.-
T Consensus       631 wl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped-ldclkflvri~~  705 (840)
T KOG2003|consen  631 WLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED-LDCLKFLVRIAG  705 (840)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc-hHHHHHHHHHhc
Confidence            345556666667777777777777777777777777777777777777777777777777776 444444444443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.57  E-value=0.00086  Score=75.37  Aligned_cols=112  Identities=17%  Similarity=0.224  Sum_probs=92.2

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA--  476 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~--  476 (554)
                      .+++.+|.+|-+.|++++|...|+++|+    ++|.+           +.+++|+|..|... +.++|+.++.+|+..  
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~----~D~~n-----------~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVK----ADRDN-----------PEIVKKLATSYEEE-DKEKAITYLKKAIYRFI  180 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHh----cCccc-----------HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            4778899999999999999999999999    88988           78899999999888 999999999988843  


Q ss_pred             ------------------CCCChHHHHH--------HH------------HHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 008780          477 ------------------NPAHVKGLYR--------RG------------MAYMALGEFEEAQRDFEMMMKVDKSSEPDA  518 (554)
Q Consensus       477 ------------------~p~~~ka~~~--------~g------------~a~~~l~~~~~A~~~~~~al~l~P~~~~~~  518 (554)
                                        +|.+..-+++        ++            .+|....+|++++..|+.+|+++|.| .-+
T Consensus       181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n-~~a  259 (906)
T PRK14720        181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKN-NKA  259 (906)
T ss_pred             hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcc-hhh
Confidence                              4554443222        34            77888999999999999999999998 456


Q ss_pred             HHHHHHHHH
Q 008780          519 TAALSKLKK  527 (554)
Q Consensus       519 ~~~l~~l~~  527 (554)
                      +..|..+.+
T Consensus       260 ~~~l~~~y~  268 (906)
T PRK14720        260 REELIRFYK  268 (906)
T ss_pred             HHHHHHHHH
Confidence            666666655

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.57  E-value=0.0016  Score=61.45  Aligned_cols=69  Identities=23%  Similarity=0.322  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~  515 (554)
                      ...++..|..++..|+|.+|+..+++++...|.+   ..|++.+|.+++..++|++|+..|++.++..|++.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~   76 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP   76 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence            4678899999999999999999999999998764   77999999999999999999999999999999984

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.57  E-value=0.0011  Score=70.05  Aligned_cols=125  Identities=15%  Similarity=0.106  Sum_probs=100.4

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhH-------------HHHHhhhHH---------HHHHHHHHHHH
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE-------------GKVFVGKRN---------LLHLNVAACLL  458 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee-------------~~~~~~~~~---------~~~~nla~~~~  458 (554)
                      +.-.+...+..|+...|.....+|.+    ..|++++-             .+..+.+..         .+|+.-+....
T Consensus       587 wlM~ake~w~agdv~~ar~il~~af~----~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er  662 (913)
T KOG0495|consen  587 WLMYAKEKWKAGDVPAARVILDQAFE----ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLER  662 (913)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHH----hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHH
Confidence            44455778889999999999999998    66666431             122222222         25566666667


Q ss_pred             HccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       459 kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      -+++.++|+..|+++|+..|+..|.|+.+|+++..+++.+.|+..|...++.-|+. ..++..|.+|..+..
T Consensus       663 ~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~-ipLWllLakleEk~~  733 (913)
T KOG0495|consen  663 YLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS-IPLWLLLAKLEEKDG  733 (913)
T ss_pred             HhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-chHHHHHHHHHHHhc
Confidence            78999999999999999999999999999999999999999999999999999987 678888888877764

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.56  E-value=0.00046  Score=49.33  Aligned_cols=47  Identities=19%  Similarity=0.380  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (554)
Q Consensus       482 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~  529 (554)
                      .++|.+|.+++.+|+|++|+...+.+|+++|+| ..+..+...++.+.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N-~Qa~~L~~~i~~~i   48 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN-RQAQSLKELIEDKI   48 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS--HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHH
Confidence            467888889999999999999999999999988 45555555554444

>PRK15331 chaperone protein SicA; Provisional

Probab=97.56  E-value=0.0011  Score=59.05  Aligned_cols=68  Identities=7%  Similarity=-0.118  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ....+..|.-++..|+|++|...+.-+..+||.|.+-++-+|.|+..+++|++|+..|-.|..++++|
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d  104 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND  104 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence            44567788888999999999999999999999999999999999999999999999999999998766

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.52  E-value=0.00021  Score=45.90  Aligned_cols=33  Identities=21%  Similarity=0.371  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      .+++++|.+++++|+|++|+.+++++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            478999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.51  E-value=0.0015  Score=55.21  Aligned_cols=62  Identities=21%  Similarity=0.250  Sum_probs=56.8

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       452 nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                      .-|.....-++.+.|++.+.++|.+-|.++.+|.++++++...++.++|+.++++|+++.-.
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~  109 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD  109 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence            34666677899999999999999999999999999999999999999999999999999643

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.48  E-value=0.00016  Score=72.21  Aligned_cols=109  Identities=19%  Similarity=0.248  Sum_probs=86.0

Q ss_pred             hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (554)
Q Consensus       394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (554)
                      +......+-+.||.||-.|+|++|+..-+.-|++-+...  +       +...-.++.|+|.||.-+++++.|+++|+++
T Consensus       191 r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--D-------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~t  261 (639)
T KOG1130|consen  191 RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--D-------RAAERRAHSNLGNCHIFLGNFELAIEHYKLT  261 (639)
T ss_pred             HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--h-------HHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence            344455667889999999999999999888777432211  1       1222568999999999999999999999998


Q ss_pred             HhhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          474 LDAN------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       474 l~~~------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      +.+.      ...+..-|-+|.+|..+.+|+.|+.++++-|.+.
T Consensus       262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7553      2246678999999999999999999999988774

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.48  E-value=0.0023  Score=60.58  Aligned_cols=68  Identities=16%  Similarity=0.283  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ..++.|.+..|+-.++|..|...+++++..||.++.+..+.|.|++.+|+..+|++.++.++...|..
T Consensus       252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            45788999999999999999999999999999999999999999999999999999999999999975

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=0.00095  Score=66.92  Aligned_cols=135  Identities=17%  Similarity=0.136  Sum_probs=101.0

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+.--|..+|..++|..|+.+-.++|+    .++.+           ...+.--|..+..+++..+|+-+++.|..+.
T Consensus       300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~----~~~r~-----------~~alilKG~lL~~~~R~~~A~IaFR~Aq~La  364 (564)
T KOG1174|consen  300 ASHWFVHAQLLYDEKKFERALNFVEKCID----SEPRN-----------HEALILKGRLLIALERHTQAVIAFRTAQMLA  364 (564)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhc----cCccc-----------chHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence            44556677788888889999998899888    77776           6788888888999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH-HHHHHHH-HHHHHHHHHHHHhhcccccc
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS-KLKKQRQ-VKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~-~l~~~~~-~~~~~~~~~~y~~~f~~~~~  550 (554)
                      |....+|--+-.+|...+++.+|...-+.+++.-|++ ...-..+. .+..-.- -++|++  +.|.+-+...|+
T Consensus       365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-A~~LtL~g~~V~~~dp~~rEKAK--kf~ek~L~~~P~  436 (564)
T KOG1174|consen  365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-ARSLTLFGTLVLFPDPRMREKAK--KFAEKSLKINPI  436 (564)
T ss_pred             hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-hhhhhhhcceeeccCchhHHHHH--HHHHhhhccCCc
Confidence            9989998888899999999999998888888888877 22222222 1111111 344555  666666665554

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.00064  Score=66.76  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=20.8

Q ss_pred             HhhhhhhhcCCHHHHHHHHHHHHH
Q 008780          403 VTGNRLFKEGKFELAKAKYEKVLR  426 (554)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~al~  426 (554)
                      =.|-.+|..|+|++|+..|.-+..
T Consensus        62 Wia~C~fhLgdY~~Al~~Y~~~~~   85 (557)
T KOG3785|consen   62 WIAHCYFHLGDYEEALNVYTFLMN   85 (557)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHhc
Confidence            367889999999999999988766

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.46  E-value=0.00075  Score=67.20  Aligned_cols=68  Identities=22%  Similarity=0.315  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCC
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF-EEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~-~~A~~~~~~al~l~P~~  514 (554)
                      ..+++.+|.|++.+|+|++|...+.+++..+|+++.++.++..+...+|+. +.+.+.+.+....+|++
T Consensus       201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence            345556666666666666666666666666666666666666666666666 44555556555566665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.44  E-value=0.00075  Score=74.29  Aligned_cols=113  Identities=15%  Similarity=0.149  Sum_probs=88.3

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHH-------------HHh------------hhHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-------------VFV------------GKRNLLHLN  452 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~-------------~~~------------~~~~~~~~n  452 (554)
                      |..+--.|..|..--+...|..+|++|.+    +++.+.+.++             ...            ..+...+..
T Consensus       492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFe----LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~  567 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDDMKRAKKCFDKAFE----LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQ  567 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhh
Confidence            33444556555555567889999999988    7766543211             110            111223445


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +|..|++-+++.+|+..++.||+.+|.+..+|.-+|.||...|+|.-|++.|.+|..++|.+
T Consensus       568 rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s  629 (1238)
T KOG1127|consen  568 RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS  629 (1238)
T ss_pred             ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence            88899999999999999999999999999999999999999999999999999999999987

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.42  E-value=0.00024  Score=45.70  Aligned_cols=32  Identities=31%  Similarity=0.605  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       482 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                      ++|+.+|.++..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            57788888888888888888888888888874

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.42  E-value=0.0015  Score=65.47  Aligned_cols=103  Identities=21%  Similarity=0.214  Sum_probs=85.4

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-  477 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-  477 (554)
                      .++-+.||.+.-.|+|+.|+++|++++.+...+....         ..+...+.||..|.-+++|.+||.+..+-|++. 
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~---------vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT---------VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh---------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456889999999999999999999988544443322         125677889999999999999999999987764 


Q ss_pred             -----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          478 -----PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       478 -----p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                           -....+++-+|.+|..+|..+.|+...++++++
T Consensus       307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                 245789999999999999999999988888876

>PRK10941 hypothetical protein; Provisional

Probab=97.41  E-value=0.002  Score=63.09  Aligned_cols=71  Identities=17%  Similarity=0.191  Sum_probs=67.3

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       444 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      .+....+.|+=.+|++.++|..|+.+++.++.++|+++.-+.-||.+|.+++.+..|+.+|+..++..|++
T Consensus       178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d  248 (269)
T PRK10941        178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED  248 (269)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence            34567889999999999999999999999999999999999999999999999999999999999999987

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.40  E-value=0.0012  Score=72.85  Aligned_cols=91  Identities=21%  Similarity=0.265  Sum_probs=75.9

Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HH
Q 008780          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE-FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VK  532 (554)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~-~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~  532 (554)
                      .--++.++|++|++.|+++|+.||+|-.|++.+|.++..+++ .++|...|..|.+++|+| .-+++.|..+.++-. ..
T Consensus        10 k~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdn-lLAWkGL~nLye~~~dIl   88 (1238)
T KOG1127|consen   10 KDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDN-LLAWKGLGNLYERYNDIL   88 (1238)
T ss_pred             HHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhh-hHHHHHHHHHHHccchhh
Confidence            334467899999999999999999999999999999999998 999999999999999998 778998988887744 33


Q ss_pred             HHHHHHHHHHhhcc
Q 008780          533 LKVRLENSLKGCLT  546 (554)
Q Consensus       533 ~~~~~~~~y~~~f~  546 (554)
                      ...++...|++.|.
T Consensus        89 ~ld~~~~~yq~~~l  102 (1238)
T KOG1127|consen   89 DLDRAAKCYQRAVL  102 (1238)
T ss_pred             hhhHhHHHHHHHHH
Confidence            33344466666554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.39  E-value=0.0016  Score=64.94  Aligned_cols=94  Identities=17%  Similarity=0.234  Sum_probs=68.0

Q ss_pred             hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH--c--cCHHHHHHHHHHHHhhCCC
Q 008780          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK--L--GECRKSIEACNKVLDANPA  479 (554)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k--l--~~~~~A~~~~~~al~~~p~  479 (554)
                      .-..+.+.++++.|.+.++.+-+    .+. |            .+..++|.++..  .  ..+.+|...+++.....+.
T Consensus       137 ~Vqi~L~~~R~dlA~k~l~~~~~----~~e-D------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~  199 (290)
T PF04733_consen  137 AVQILLKMNRPDLAEKELKNMQQ----IDE-D------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS  199 (290)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHC----CSC-C------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh----cCC-c------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC
Confidence            34456677777777777766444    322 1            244555554444  3  3699999999998888788


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ++..+..++.|++.+|+|++|...+++|+..+|++
T Consensus       200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~  234 (290)
T PF04733_consen  200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND  234 (290)
T ss_dssp             SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999987

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.38  E-value=0.0027  Score=67.18  Aligned_cols=93  Identities=18%  Similarity=0.253  Sum_probs=51.4

Q ss_pred             HHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCh
Q 008780          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (554)
Q Consensus       402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~  481 (554)
                      ...|-.+-..++|++|+.+|+.|+.    +.+++           ..++..+|..+.++++|+.....-.+.|++.|.+.
T Consensus        79 Hv~gl~~R~dK~Y~eaiKcy~nAl~----~~~dN-----------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r  143 (700)
T KOG1156|consen   79 HVLGLLQRSDKKYDEAIKCYRNALK----IEKDN-----------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR  143 (700)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHh----cCCCc-----------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH
Confidence            3344444445555555555555555    55554           44555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780          482 KGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (554)
Q Consensus       482 ka~~~~g~a~~~l~~~~~A~~~~~~al~  509 (554)
                      ..|+-.+.++..+|++..|...++...+
T Consensus       144 a~w~~~Avs~~L~g~y~~A~~il~ef~~  171 (700)
T KOG1156|consen  144 ASWIGFAVAQHLLGEYKMALEILEEFEK  171 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555554444444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.37  E-value=0.0049  Score=53.70  Aligned_cols=69  Identities=16%  Similarity=0.233  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~---~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~  515 (554)
                      ..-+++.|...++.|+|.+|+..++.+....|-   ...|.+.++-+|+..++|++|+..+++-++|+|+|.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp   81 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP   81 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence            456788899999999999999999999998775   477999999999999999999999999999999984

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.012  Score=55.78  Aligned_cols=127  Identities=15%  Similarity=0.168  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008780          414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA  493 (554)
Q Consensus       414 ~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~  493 (554)
                      +-+|...|+.|+++++++-.+|+.+        ..++-..-.....+|+-.+||+....-|+.-+.+..||..++..|..
T Consensus        95 ~lEa~~~~~~A~e~y~~lL~ddpt~--------~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~  166 (289)
T KOG3060|consen   95 LLEATGNYKEAIEYYESLLEDDPTD--------TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS  166 (289)
T ss_pred             HHHHhhchhhHHHHHHHHhccCcch--------hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            4567777777777777766665332        23344444455567777888888888888889999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccc
Q 008780          494 LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       494 l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f~~~~  549 (554)
                      +++|+.|.-+|+..+-+.|.| +.....+..+..-+. .+..+--.+.|.+.+...+
T Consensus       167 ~~~f~kA~fClEE~ll~~P~n-~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  167 EGDFEKAAFCLEELLLIQPFN-PLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HhHHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            999999999999999999988 667777777776665 3332222277777766555

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.28  E-value=0.0061  Score=62.98  Aligned_cols=106  Identities=17%  Similarity=0.134  Sum_probs=89.6

Q ss_pred             cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (554)
Q Consensus       411 ~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  490 (554)
                      .++++.|+..+++...    .+|.              +..-+|.+++.+++..+|+....++|...|.+...+...+..
T Consensus       182 t~~~~~ai~lle~L~~----~~pe--------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRE----RDPE--------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF  243 (395)
T ss_pred             cccHHHHHHHHHHHHh----cCCc--------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4568888888877665    4442              344588999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 008780          491 YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKV  535 (554)
Q Consensus       491 ~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~  535 (554)
                      ++..++++.|+...++|.++.|++ -..+..|.++......-+.+
T Consensus       244 Ll~k~~~~lAL~iAk~av~lsP~~-f~~W~~La~~Yi~~~d~e~A  287 (395)
T PF09295_consen  244 LLSKKKYELALEIAKKAVELSPSE-FETWYQLAECYIQLGDFENA  287 (395)
T ss_pred             HHhcCCHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhcCCHHHH
Confidence            999999999999999999999997 67888888888777633333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.22  E-value=0.0013  Score=47.07  Aligned_cols=42  Identities=21%  Similarity=0.299  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008780          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  489 (554)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~  489 (554)
                      .+++.+|..+.++++|.+|..+|+.+|+++|+|..|.-.+..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            478899999999999999999999999999999887665443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.21  E-value=0.0048  Score=65.35  Aligned_cols=122  Identities=11%  Similarity=-0.011  Sum_probs=91.4

Q ss_pred             cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (554)
Q Consensus       411 ~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  490 (554)
                      .++.++|+++.++||+    ..|.           ...+|+.+|..+-.+++.+.|...|..-+..-|+.+-.|..++..
T Consensus       664 ld~~eeA~rllEe~lk----~fp~-----------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl  728 (913)
T KOG0495|consen  664 LDNVEEALRLLEEALK----SFPD-----------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL  728 (913)
T ss_pred             hhhHHHHHHHHHHHHH----hCCc-----------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence            4445555555555555    3343           378999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          491 YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       491 ~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      -...|+.-.|+..|.++.--+|.| ...+.+.-++..+..-.+.++  .+..+.+..+|.
T Consensus       729 eEk~~~~~rAR~ildrarlkNPk~-~~lwle~Ir~ElR~gn~~~a~--~lmakALQecp~  785 (913)
T KOG0495|consen  729 EEKDGQLVRARSILDRARLKNPKN-ALLWLESIRMELRAGNKEQAE--LLMAKALQECPS  785 (913)
T ss_pred             HHHhcchhhHHHHHHHHHhcCCCc-chhHHHHHHHHHHcCCHHHHH--HHHHHHHHhCCc
Confidence            999999999999999999999998 455544444444433222222  455555555544

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.16  E-value=0.0012  Score=68.68  Aligned_cols=106  Identities=20%  Similarity=0.279  Sum_probs=90.7

Q ss_pred             hhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHH
Q 008780          407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR  486 (554)
Q Consensus       407 ~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~  486 (554)
                      .+-..|+-..|+.+...|+.    ..|...          ..-..|||...++-+...+|-.++.++|.+.-..+-.+|-
T Consensus       616 ywr~~gn~~~a~~cl~~a~~----~~p~~~----------~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~  681 (886)
T KOG4507|consen  616 YWRAVGNSTFAIACLQRALN----LAPLQQ----------DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLS  681 (886)
T ss_pred             eeeecCCcHHHHHHHHHHhc----cChhhh----------cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHh
Confidence            33357888999999999998    666542          2457899999999999999999999999999888899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          487 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       487 ~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      +|.+++.+.+.+.|++.|+.|++++|++ ..+.+-|..+.-
T Consensus       682 ~g~~~l~l~~i~~a~~~~~~a~~~~~~~-~~~~~~l~~i~c  721 (886)
T KOG4507|consen  682 LGNAYLALKNISGALEAFRQALKLTTKC-PECENSLKLIRC  721 (886)
T ss_pred             cchhHHHHhhhHHHHHHHHHHHhcCCCC-hhhHHHHHHHHH
Confidence            9999999999999999999999999998 667766665543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.13  E-value=0.0087  Score=54.51  Aligned_cols=104  Identities=16%  Similarity=0.201  Sum_probs=82.1

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      .....+.+..++..++++.|....+.++.     .+.|       ..+...+-.++|.+++.++.+++|+..++..-.-.
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~-----~t~D-------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~  156 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALA-----QTKD-------ENLKALAALRLARVQLQQKKADAALKTLDTIKEES  156 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHc-----cchh-------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc
Confidence            44567888899999999999999999997     3443       23445677899999999999999998876643211


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                       -.+..-..+|.++...|+-++|+..|++|++.++++
T Consensus       157 -w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         157 -WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             -HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence             122335678999999999999999999999998653

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.0035  Score=66.07  Aligned_cols=104  Identities=17%  Similarity=0.217  Sum_probs=89.4

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      -..+++.+..+|+.++|..|++.|...++++    +.| ++.    ...+.+.-+++.||+++.+.+.|.+++.+|-+.+
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i----~~D-~~~----~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d  424 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDI----ISD-NYS----DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD  424 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc----cch-hhh----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence            3457899999999999999999999999953    333 111    2236788899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      |.++-.-+..-++....+.-++|+.++.+....
T Consensus       425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            999999999999999999999999988877664

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.10  E-value=0.0052  Score=52.36  Aligned_cols=82  Identities=16%  Similarity=0.280  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHccC---HHHHHHHHHHHHh-hCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008780          447 NLLHLNVAACLLKLGE---CRKSIEACNKVLD-ANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA  521 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~---~~~A~~~~~~al~-~~p-~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~  521 (554)
                      ..+.+|+|.|+.+..+   ..+.+..++..+. -.| ....++|.++..|+.+++|+.|+.+++..|+.+|+| ..+..+
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n-~Qa~~L  110 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN-RQALEL  110 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc-HHHHHH
Confidence            5678999999988754   7788888888886 344 356799999999999999999999999999999998 455544


Q ss_pred             HHHHHHHH
Q 008780          522 LSKLKKQR  529 (554)
Q Consensus       522 l~~l~~~~  529 (554)
                      -..++.++
T Consensus       111 k~~ied~i  118 (149)
T KOG3364|consen  111 KETIEDKI  118 (149)
T ss_pred             HHHHHHHH
Confidence            44444444

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.0037  Score=61.61  Aligned_cols=87  Identities=20%  Similarity=0.274  Sum_probs=69.7

Q ss_pred             hhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHH
Q 008780          407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR  486 (554)
Q Consensus       407 ~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~  486 (554)
                      .+..+.+|.-|+...+-.+.    ++  + ||+       ..+-.-+|.|++.+|+|++|+..|.-+.+.+..+.+.+.+
T Consensus        31 dfls~rDytGAislLefk~~----~~--~-EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn   96 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLN----LD--R-EEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN   96 (557)
T ss_pred             HHHhcccchhHHHHHHHhhc----cc--h-hhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh
Confidence            45567788888887766554    22  1 211       3556678999999999999999999999988889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHH
Q 008780          487 RGMAYMALGEFEEAQRDFEMM  507 (554)
Q Consensus       487 ~g~a~~~l~~~~~A~~~~~~a  507 (554)
                      +|.|.+-+|.|.+|...-.+|
T Consensus        97 LAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   97 LACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999998866554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.97  E-value=0.0026  Score=58.62  Aligned_cols=70  Identities=17%  Similarity=0.240  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~  515 (554)
                      ++.+++.+|..|-.+|-+.-|...+.++|.+.|.-+.++..+|.-+...|+|+.|.+.|...+++||.++
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~  133 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  133 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence            5789999999999999999999999999999999999999999999999999999999999999999873

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.96  E-value=0.00086  Score=43.26  Aligned_cols=33  Identities=27%  Similarity=0.447  Sum_probs=30.7

Q ss_pred             HHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHH
Q 008780          420 KYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  467 (554)
Q Consensus       420 ~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~  467 (554)
                      +|++||+    ++|.+           ..+|+|+|.+|...|++++|+
T Consensus         1 ~y~kAie----~~P~n-----------~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIE----LNPNN-----------AEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHH----HCCCC-----------HHHHHHHHHHHHHCcCHHhhc
Confidence            4899999    99999           889999999999999999986

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.0015  Score=61.01  Aligned_cols=72  Identities=14%  Similarity=0.183  Sum_probs=62.7

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      -+.+++.-++|..|+.+|.+||.++|..+..|-+++.||+.+.+|+.+..+..+|++++|+. ......|...
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~-vk~h~flg~~   87 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL-VKAHYFLGQW   87 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH-HHHHHHHHHH
Confidence            45667778899999999999999999999999999999999999999999999999999986 4444444443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=0.0025  Score=61.35  Aligned_cols=94  Identities=23%  Similarity=0.374  Sum_probs=76.6

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .|....+.|..+|+.|+|+.|++.|+.|+.    ...-+           ..+-+|+|.||++.++|..|+++..+.++.
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlq----vsGyq-----------pllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQ----VSGYQ-----------PLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHh----hcCCC-----------chhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            466678899999999999999999999999    44433           467899999999999999999999998865


Q ss_pred             C----CC----------------C---------hHHHHHHHHHHHHcCCHHHHHHHHH
Q 008780          477 N----PA----------------H---------VKGLYRRGMAYMALGEFEEAQRDFE  505 (554)
Q Consensus       477 ~----p~----------------~---------~ka~~~~g~a~~~l~~~~~A~~~~~  505 (554)
                      .    |.                |         ..|+...+.++++.++++.|.+.+.
T Consensus       208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence            2    21                1         3456667888999999999987653

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.89  E-value=0.0016  Score=41.71  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      .+|+++|.+|.++|++++|+.+++++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            478999999999999999999999999999864

...

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.88  E-value=0.016  Score=60.98  Aligned_cols=112  Identities=18%  Similarity=0.228  Sum_probs=83.4

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHH--------------------hhhHHHHHHHHHHHHHH
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF--------------------VGKRNLLHLNVAACLLK  459 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~--------------------~~~~~~~~~nla~~~~k  459 (554)
                      .+.-+|..+|+.++|++|+..|+..++    -+..+.++....                    .+.-..+++|.|..+..
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~k----n~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~  187 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAK----NNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIE  187 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHh
Confidence            445688999999999999999998766    333222221100                    01123578999999999


Q ss_pred             ccCHHHHHHHHHHHHhhC-------CCC--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780          460 LGECRKSIEACNKVLDAN-------PAH--------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       460 l~~~~~A~~~~~~al~~~-------p~~--------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~  515 (554)
                      .|+|.+|++.+.+|+.+.       -.+        .-....++.++..+|+.++|...|...++.+|.+.
T Consensus       188 ~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  188 NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE  258 (652)
T ss_pred             cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence            999999999999995431       111        23567789999999999999999999999988663

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.68  E-value=0.015  Score=62.20  Aligned_cols=101  Identities=18%  Similarity=0.233  Sum_probs=80.9

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  478 (554)
                      --+...|..+..+|+.+.|+..|++|+.    ..    +   ...++...+++.++.|++-+.+|++|..++.+.++.+.
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~----~q----~---~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~  336 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIE----SQ----S---EWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK  336 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhcc----ch----h---hHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence            3456788889999999999999999886    21    1   23445578999999999999999999999999998654


Q ss_pred             CChHHH--HHHHHHHHHcCCH-------HHHHHHHHHHHHhC
Q 008780          479 AHVKGL--YRRGMAYMALGEF-------EEAQRDFEMMMKVD  511 (554)
Q Consensus       479 ~~~ka~--~~~g~a~~~l~~~-------~~A~~~~~~al~l~  511 (554)
                       +.+++  |..|.|+..+++.       ++|...|.++-.+-
T Consensus       337 -WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  337 -WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             -cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence             55654  4568999999999       88888888776654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.65  E-value=0.051  Score=51.46  Aligned_cols=103  Identities=24%  Similarity=0.269  Sum_probs=76.2

Q ss_pred             hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC-------HHHHHHHHHHHHhh
Q 008780          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-------CRKSIEACNKVLDA  476 (554)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~-------~~~A~~~~~~al~~  476 (554)
                      .+..+-....+++|+..|.-|+-.........        ...+.+++.+|.+|..+++       +..|+..+.++++.
T Consensus        83 ~~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~~--------s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~  154 (214)
T PF09986_consen   83 KPRDFSGERTLEEAIESYKLALLCAQIKKEKP--------SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN  154 (214)
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            33355667789999999999997544333222        1347789999999999998       44555555555554


Q ss_pred             CC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          477 NP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       477 ~p------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ..      +....+|.+|..++.+|++++|+.+|.+++..--.+
T Consensus       155 e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  155 EDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             CcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            32      236789999999999999999999999999865443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.63  E-value=0.0034  Score=39.79  Aligned_cols=31  Identities=32%  Similarity=0.589  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       483 a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                      |+|++|.++..+|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5666666666666666666666666666665

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.62  E-value=0.018  Score=51.88  Aligned_cols=55  Identities=22%  Similarity=0.344  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChH
Q 008780          462 ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF----------EEAQRDFEMMMKVDKSSEP  516 (554)
Q Consensus       462 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~----------~~A~~~~~~al~l~P~~~~  516 (554)
                      -|+.|.+.+......+|.++.+++|-|.++..+.++          ++|+.-|+.||.++|+...
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd   70 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD   70 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH
Confidence            378899999999999999999999999999998554          6788899999999998743

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.61  E-value=0.089  Score=49.35  Aligned_cols=129  Identities=19%  Similarity=0.185  Sum_probs=89.1

Q ss_pred             HHHHHHhhhhhhhc-CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          398 AEKIRVTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       398 a~~~~~~G~~~~~~-g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      |.-+.+.|..+-.. .++++|+.+|++|-++...-.         .......|+...|.....+++|.+|+..|+++..-
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee---------s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~  183 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE---------SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS  183 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444566666555 788999999999998654311         12223568888888888899999999999998765


Q ss_pred             CCCC------hHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHH
Q 008780          477 NPAH------VKGL-YRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAALSKLKKQRQVKLKV  535 (554)
Q Consensus       477 ~p~~------~ka~-~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~-~~~~~~l~~l~~~~~~~~~~  535 (554)
                      .-+|      +|-| +..|.||+...+.-.|...+++..+++|.-. ..--+.|+.|...+...+-+
T Consensus       184 s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e  250 (288)
T KOG1586|consen  184 SLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIE  250 (288)
T ss_pred             hccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHH
Confidence            4333      4544 4568888888999999999999999999752 12233455555555433333

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=0.015  Score=56.11  Aligned_cols=103  Identities=13%  Similarity=0.167  Sum_probs=81.2

Q ss_pred             hhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHH
Q 008780          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR  487 (554)
Q Consensus       408 ~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~  487 (554)
                      +.+..+|..|+++...-.+    ..|.+           ...+..+|.||+...+|..|..+|.+.-.+.|...+..+..
T Consensus        20 lI~d~ry~DaI~~l~s~~E----r~p~~-----------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~   84 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELE----RSPRS-----------RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ   84 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHh----cCccc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            3566777888877766666    66655           56788999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          488 GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       488 g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      ++.++..+.|.+|++.......    + +..+...-+|+..++
T Consensus        85 AQSLY~A~i~ADALrV~~~~~D----~-~~L~~~~lqLqaAIk  122 (459)
T KOG4340|consen   85 AQSLYKACIYADALRVAFLLLD----N-PALHSRVLQLQAAIK  122 (459)
T ss_pred             HHHHHHhcccHHHHHHHHHhcC----C-HHHHHHHHHHHHHHh
Confidence            9999999999999987765432    2 345555555555554

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.56  E-value=0.072  Score=54.76  Aligned_cols=130  Identities=15%  Similarity=0.118  Sum_probs=106.5

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      +...|.--..++++..|...|.+||.    .+..+           +.+++..|.|-+|.++...|....++|+.+-|.-
T Consensus        76 WikYaqwEesq~e~~RARSv~ERALd----vd~r~-----------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV  140 (677)
T KOG1915|consen   76 WIKYAQWEESQKEIQRARSVFERALD----VDYRN-----------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV  140 (677)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHh----ccccc-----------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence            33445555567889999999999998    55544           7899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      -+.||..-..-..+|+..-|+..|++-++..|+.  .++...-+...+.+.-+.++  ..|.+..--+|
T Consensus       141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e--qaW~sfI~fElRykeieraR--~IYerfV~~HP  205 (677)
T KOG1915|consen  141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE--QAWLSFIKFELRYKEIERAR--SIYERFVLVHP  205 (677)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHhhHHHHHH--HHHHHHheecc
Confidence            9999999988999999999999999999999984  56666666555555455566  78887765544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.48  E-value=0.1  Score=47.98  Aligned_cols=58  Identities=29%  Similarity=0.492  Sum_probs=30.4

Q ss_pred             HHHHccCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          456 CLLKLGECRKSIEACNKVLDANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       456 ~~~kl~~~~~A~~~~~~al~~~p---~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                      ++...+++..|+..+.+++..+|   .....++.++..+...++++.|+..+.+++...+.
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            45555555555555555555444   23444444444455555555555555555555554

>smart00028 TPR Tetratricopeptide repeats

Probab=96.45  E-value=0.0048  Score=37.97  Aligned_cols=32  Identities=34%  Similarity=0.720  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       482 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                      .+++++|.++..++++++|+..|+++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35566666666666666666666666666554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.43  E-value=0.24  Score=49.14  Aligned_cols=141  Identities=14%  Similarity=0.041  Sum_probs=100.1

Q ss_pred             CCChhhhhHHHHHHHHhhhhhhhcC-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHH
Q 008780          388 GLSFDGIMDEAEKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  466 (554)
Q Consensus       388 ~~~~~~~~~~a~~~~~~G~~~~~~g-~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A  466 (554)
                      .+++......+..+.+.|..+++++ +|..|+...++|.++++.... .+.......+++..++..++.+|+..+.++..
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~  103 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV  103 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            4566777788999999999999999 999999999999998755211 11112234567789999999999998886544


Q ss_pred             HHHHHHHH----hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          467 IEACNKVL----DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       467 ~~~~~~al----~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      .+ |.+++    ...|+.+..++..=.++...++.+++.+.+.+++.--+-.+......+..++....
T Consensus       104 ~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~  170 (278)
T PF08631_consen  104 EK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE  170 (278)
T ss_pred             HH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh
Confidence            33 44444    33577677776666666668999999999999888644222345555555544444

It is also involved in sporulation [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.42  E-value=0.058  Score=56.89  Aligned_cols=109  Identities=20%  Similarity=0.273  Sum_probs=80.4

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHH-------------HH---Hhh------hHHHHHHHHHHH
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-------------KV---FVG------KRNLLHLNVAAC  456 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~-------------~~---~~~------~~~~~~~nla~~  456 (554)
                      ..+...-|.+-+.++|++|+..-.+.+.    ..|++....             +.   +.+      ......+..|.|
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~----~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc   88 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILS----IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYC   88 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHh----cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHH
Confidence            4566667777788888888888777777    545443210             00   000      011123678999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       457 ~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ++++++.++|+..++   -.++...+.+..+|+.++.+++|++|.+.|+...+-+-++
T Consensus        89 ~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd  143 (652)
T KOG2376|consen   89 EYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD  143 (652)
T ss_pred             HHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence            999999999999888   5667778899999999999999999999999998876554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.30  E-value=0.0068  Score=56.41  Aligned_cols=68  Identities=25%  Similarity=0.419  Sum_probs=58.9

Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780          457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (554)
Q Consensus       457 ~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~  524 (554)
                      ..+.++.+.|.+.+.++|++-|.+...|||+|......|+++.|.+.|++.|+++|.+...+...|..
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~   72 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAV   72 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHh
Confidence            44678899999999999999999999999999999999999999999999999999874333333333

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.29  E-value=0.0083  Score=39.17  Aligned_cols=29  Identities=24%  Similarity=0.436  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       483 a~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      +|.++|.+|..+|+|++|+..|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            57888999999999999999999966553

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=0.16  Score=49.51  Aligned_cols=112  Identities=21%  Similarity=0.310  Sum_probs=84.3

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHH------
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK------  472 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~------  472 (554)
                      +.....+..+...+++..|...|..++.    ..|.+           ..+...+|.||...|+.+.|...+..      
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~----~~~~~-----------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~  199 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQ----AAPEN-----------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQ  199 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHH----hCccc-----------chHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence            3456778889999999999999999999    66665           45777788888888887665544433      


Q ss_pred             ----------------------------HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHH
Q 008780          473 ----------------------------VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAALS  523 (554)
Q Consensus       473 ----------------------------al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~-~~~~~~l~  523 (554)
                                                  .+..||++..+-+.+|..+...|++++|.+.+-..++.|-+.+ ..+++.|-
T Consensus       200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ll  279 (304)
T COG3118         200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL  279 (304)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence                                        1244799999999999999999999999999988888754321 23454444


Q ss_pred             HH
Q 008780          524 KL  525 (554)
Q Consensus       524 ~l  525 (554)
                      .+
T Consensus       280 e~  281 (304)
T COG3118         280 EL  281 (304)
T ss_pred             HH
Confidence            43

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.28  E-value=0.0056  Score=62.99  Aligned_cols=65  Identities=18%  Similarity=0.179  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       450 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +-+-|.-.++-+.|+.|+..|.+||+++|+++..+-+|++++...++|..|+.++.+|++++|..
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~   71 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY   71 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence            44556667788999999999999999999999999999999999999999999999999999965

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.28  E-value=0.31  Score=49.25  Aligned_cols=107  Identities=13%  Similarity=0.108  Sum_probs=70.0

Q ss_pred             hhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008780          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (554)
Q Consensus       393 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  472 (554)
                      .+...+......|-.-+-.|+|.+|.+...++-+    -.+..           ..+|.--|.+...+|+++.|=.+..+
T Consensus        79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae----~~e~p-----------~l~~l~aA~AA~qrgd~~~an~yL~e  143 (400)
T COG3071          79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAE----HGEQP-----------VLAYLLAAEAAQQRGDEDRANRYLAE  143 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhh----cCcch-----------HHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            4556777888888888899999999999888766    22111           33445555556666666666666666


Q ss_pred             HHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          473 VLDANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       473 al~~~p-~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +-+..+ ...-++..++..+...+++..|...+.++++..|.+
T Consensus       144 aae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~  186 (400)
T COG3071         144 AAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRH  186 (400)
T ss_pred             HhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCC
Confidence            666522 234455556666666666666666666666666665

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.27  E-value=0.0073  Score=38.17  Aligned_cols=32  Identities=25%  Similarity=0.506  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      +++++|.|+.++|++++|+..+++++...|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            67899999999999999999999999999974

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.25  E-value=0.17  Score=47.49  Aligned_cols=110  Identities=16%  Similarity=0.196  Sum_probs=81.6

Q ss_pred             hhHHHHHHHHh-hhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008780          394 IMDEAEKIRVT-GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (554)
Q Consensus       394 ~~~~a~~~~~~-G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  472 (554)
                      +.+.|..+..+ ||.+--+++|..|-..|-+|.++.-.....++         ...+|...+.||.+. +..+|+.++.+
T Consensus        29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhD---------aat~YveA~~cykk~-~~~eAv~cL~~   98 (288)
T KOG1586|consen   29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHD---------AATTYVEAANCYKKV-DPEEAVNCLEK   98 (288)
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchh---------HHHHHHHHHHHhhcc-ChHHHHHHHHH
Confidence            44455555444 45555688999999999999886544444332         367888889998666 99999999999


Q ss_pred             HHhhCCC------ChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC
Q 008780          473 VLDANPA------HVKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       473 al~~~p~------~~ka~~~~g~a~~~-l~~~~~A~~~~~~al~l~P~  513 (554)
                      ++++--+      -++-++-+|..|.. +.+++.|+.+|++|-+.-..
T Consensus        99 aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~  146 (288)
T KOG1586|consen   99 AIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG  146 (288)
T ss_pred             HHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence            9988532      35556677777776 48999999999999987544

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.033  Score=54.72  Aligned_cols=69  Identities=16%  Similarity=0.136  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~----~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~  515 (554)
                      +.-|-.-|.-|++.++|..|+..|.+.|+....    |+-.|.+||.|++.+|+|..|+.+..+|+.++|.+-
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~  153 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL  153 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence            344556688899999999999999999988643    566899999999999999999999999999999984

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.22  E-value=0.13  Score=53.44  Aligned_cols=94  Identities=14%  Similarity=0.040  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 008780          415 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL  494 (554)
Q Consensus       415 ~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l  494 (554)
                      ..-...|++|+.    ..+.|           ..++++...-..+.+.|.+.-..|.++|..+|+++..|...|.-.+..
T Consensus        88 ~rIv~lyr~at~----rf~~D-----------~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~  152 (568)
T KOG2396|consen   88 NRIVFLYRRATN----RFNGD-----------VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEI  152 (568)
T ss_pred             HHHHHHHHHHHH----hcCCC-----------HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhh
Confidence            344667888887    55555           678888777777778899999999999999999999999999999998


Q ss_pred             CC-HHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780          495 GE-FEEAQRDFEMMMKVDKSSEPDATAALSK  524 (554)
Q Consensus       495 ~~-~~~A~~~~~~al~l~P~~~~~~~~~l~~  524 (554)
                      +. .+.|++.|.++|+.+|++ +.++.+.-+
T Consensus       153 n~ni~saRalflrgLR~npds-p~Lw~eyfr  182 (568)
T KOG2396|consen  153 NLNIESARALFLRGLRFNPDS-PKLWKEYFR  182 (568)
T ss_pred             ccchHHHHHHHHHHhhcCCCC-hHHHHHHHH
Confidence            86 999999999999999998 566655433

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.19  E-value=0.015  Score=57.72  Aligned_cols=102  Identities=20%  Similarity=0.188  Sum_probs=83.4

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  479 (554)
                      .+...|+++...+.|++|++.|++|+++-...+..         -+...++..++..+-++++|++|+-+..+|+++-..
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~---------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s  194 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA---------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS  194 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc---------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence            34458999999999999999999999975443221         122568889999999999999999999999987421


Q ss_pred             ----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          480 ----------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       480 ----------~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                                ..-++|+++.++..+|+.-.|.++.+.|.++
T Consensus       195 ~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  195 YGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             cCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence                      2347899999999999999999999999886

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.16  E-value=0.0089  Score=39.01  Aligned_cols=28  Identities=21%  Similarity=0.233  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          449 LHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      ++.+||.+|.++|+|++|+.+|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999996654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.10  E-value=0.11  Score=47.97  Aligned_cols=94  Identities=31%  Similarity=0.541  Sum_probs=74.9

Q ss_pred             hhhhcCCHHHHHHHHHHHHHHhhccCCC-ChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-ChHHH
Q 008780          407 RLFKEGKFELAKAKYEKVLRDFNHVNPQ-DDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-HVKGL  484 (554)
Q Consensus       407 ~~~~~g~~~~A~~~Y~~al~~l~~~~p~-~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~-~~ka~  484 (554)
                      .++..+++..|+..|.+++.    ..+. ..         ....+.+++..+...+++..|+..+.+++...+. ...++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~----~~~~~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  205 (291)
T COG0457         139 ALYELGDYEEALELYEKALE----LDPELNE---------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEAL  205 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHh----cCCCccc---------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHH
Confidence            78889999999999999966    4442 10         1344555555577888899999999999988888 68888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          485 YRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       485 ~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                      ..++.++...++++.|+..+.+++...|.
T Consensus       206 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         206 LNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            88999999988999999999999888886

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.06  E-value=0.03  Score=54.37  Aligned_cols=70  Identities=19%  Similarity=0.198  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP  516 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~  516 (554)
                      +.+-.+.|.-..+.|+.++|...+..||+++|.++.++.+.|+....-++.-+|-.+|-+||.++|.|..
T Consensus       116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse  185 (472)
T KOG3824|consen  116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE  185 (472)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence            4455677777889999999999999999999999999999999999999999999999999999999843

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.02  E-value=0.11  Score=53.41  Aligned_cols=139  Identities=15%  Similarity=0.084  Sum_probs=97.5

Q ss_pred             hhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 008780          391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  470 (554)
Q Consensus       391 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  470 (554)
                      ++....-|..+.-.+....++.+...|.+..-.|+.    ..|.+            .++-..-..-+++++++.|...|
T Consensus       397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG----~cPK~------------KlFk~YIelElqL~efDRcRkLY  460 (677)
T KOG1915|consen  397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG----KCPKD------------KLFKGYIELELQLREFDRCRKLY  460 (677)
T ss_pred             CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc----cCCch------------hHHHHHHHHHHHHhhHHHHHHHH
Confidence            344444556666666667777777778777777777    56654            22222333455789999999999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008780          471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAALSKLKKQRQVKLKVRLENSLKGCLTR  547 (554)
Q Consensus       471 ~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~-~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~  547 (554)
                      .+-|+..|.|..+|...|..-..||+.+.|++.|+-|+....-+. .-+++..-...-....-++++  +.|.+++..
T Consensus       461 Ekfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR--~LYerlL~r  536 (677)
T KOG1915|consen  461 EKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR--ALYERLLDR  536 (677)
T ss_pred             HHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH--HHHHHHHHh
Confidence            999999999999999999999999999999999999997543221 123333333333333455666  788887764

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.01  E-value=0.26  Score=53.06  Aligned_cols=97  Identities=18%  Similarity=0.180  Sum_probs=87.3

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  479 (554)
                      .+.-.+..+-..|++++|+...++||+    ..|..           +.+|+..|.++.++|++.+|..+.+.|-.+|+.
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~----htPt~-----------~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~  260 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIE----HTPTL-----------VELYMTKARILKHAGDLKEAAEAMDEARELDLA  260 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence            456677788889999999999999999    77876           789999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      +.-.--..+..+++.|+.++|...+..-.+-+
T Consensus       261 DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  261 DRYINSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            88888888999999999999999888776654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.01  E-value=0.15  Score=56.33  Aligned_cols=91  Identities=22%  Similarity=0.261  Sum_probs=74.1

Q ss_pred             hhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHH
Q 008780          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR  487 (554)
Q Consensus       408 ~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~  487 (554)
                      ....++|..|+..-.+.++    -.|+.           ..+..--|..+.++|++++|....+..-...+++-..+-.+
T Consensus        19 ~ld~~qfkkal~~~~kllk----k~Pn~-----------~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l   83 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLK----KHPNA-----------LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFL   83 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHH
Confidence            4456778888888888888    67765           34555668889999999999954444444566788889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          488 GMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       488 g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                      -.+|..++++++|...|++++.-+|+
T Consensus        84 ~~~y~d~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   84 QNVYRDLGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence            99999999999999999999999998

>smart00028 TPR Tetratricopeptide repeats

Probab=95.98  E-value=0.012  Score=36.15  Aligned_cols=33  Identities=27%  Similarity=0.471  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      .+++++|.|+..++++.+|+.++.+++.++|.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            468899999999999999999999999998853

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.97  E-value=0.18  Score=48.29  Aligned_cols=65  Identities=18%  Similarity=0.268  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHc----cCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          450 HLNVAACLLKL----GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       450 ~~nla~~~~kl----~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +..||.+|.++    +.+.+|.-.|++.-+.-|..+..+.-++.|++.+++|++|...++.||.-++++
T Consensus       172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d  240 (299)
T KOG3081|consen  172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD  240 (299)
T ss_pred             HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence            33344444443    346666666666555455556666666666666666666666666666666555

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.97  E-value=0.1  Score=54.35  Aligned_cols=125  Identities=12%  Similarity=0.101  Sum_probs=87.8

Q ss_pred             CCCCChhhhhHHHHHHHHhhhh----h--h---hcCCHHHHHHHHHHHHHHhhccCCCCh------hHHHH----HhhhH
Q 008780          386 WTGLSFDGIMDEAEKIRVTGNR----L--F---KEGKFELAKAKYEKVLRDFNHVNPQDD------EEGKV----FVGKR  446 (554)
Q Consensus       386 ~~~~~~~~~~~~a~~~~~~G~~----~--~---~~g~~~~A~~~Y~~al~~l~~~~p~~~------ee~~~----~~~~~  446 (554)
                      |.+-+++.+++.|....+.-..    |  .   ......+|.+.|++|++.-+..-..+.      ...+.    .....
T Consensus       179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~  258 (539)
T PF04184_consen  179 WRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL  258 (539)
T ss_pred             HhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence            4456777888777765544332    1  2   233468999999999986433211110      01111    11123


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      ..+...+|.|..++|+.++|++.++..++..|.  +...++++-.+++.+++|.++.+.+.+.=.+
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi  324 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI  324 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence            456678999999999999999999999988775  6779999999999999999999999987544

The molecular function of this protein is uncertain.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.93  E-value=0.16  Score=50.48  Aligned_cols=129  Identities=8%  Similarity=0.019  Sum_probs=88.6

Q ss_pred             HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCCh
Q 008780          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLDANPAHV  481 (554)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~~~p~~~  481 (554)
                      ...+..-+.+..+.|...|.+|+.    .....           ..+|...|..-+. .++.+.|...++.+++.-|.+.
T Consensus         6 ~~m~~~~r~~g~~~aR~vF~~a~~----~~~~~-----------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~   70 (280)
T PF05843_consen    6 QYMRFMRRTEGIEAARKVFKRARK----DKRCT-----------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP   70 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC----CCCS------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHc----CCCCC-----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH
Confidence            334444555558899999999975    33322           4577777887556 5777779999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcc
Q 008780          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQ-VKLKVRLENSLKGCLT  546 (554)
Q Consensus       482 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~--~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f~  546 (554)
                      ..|.....-+..+++.+.|+..|++++..-|...  ..++....+.+.+.. .+.-.++.+.+..+|.
T Consensus        71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~  138 (280)
T PF05843_consen   71 DFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP  138 (280)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999877642  235554445544443 2333333333444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.73  E-value=0.12  Score=50.29  Aligned_cols=84  Identities=20%  Similarity=0.218  Sum_probs=73.1

Q ss_pred             hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (554)
Q Consensus       394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (554)
                      ....|......+....+.|+.++|...|..|+.    +.|.+           ..++..+|...-..++.-+|-.+|-+|
T Consensus       112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAla----laP~~-----------p~~L~e~G~f~E~~~~iv~ADq~Y~~A  176 (472)
T KOG3824|consen  112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALA----LAPTN-----------PQILIEMGQFREMHNEIVEADQCYVKA  176 (472)
T ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHh----cCCCC-----------HHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence            345566666777888899999999999999999    89988           678888888888888999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHH
Q 008780          474 LDANPAHVKGLYRRGMAYM  492 (554)
Q Consensus       474 l~~~p~~~ka~~~~g~a~~  492 (554)
                      |.++|.|.+|+.++++..-
T Consensus       177 LtisP~nseALvnR~RT~p  195 (472)
T KOG3824|consen  177 LTISPGNSEALVNRARTTP  195 (472)
T ss_pred             eeeCCCchHHHhhhhccch
Confidence            9999999999999987653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.70  E-value=0.19  Score=58.61  Aligned_cols=102  Identities=16%  Similarity=0.055  Sum_probs=72.5

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP--  478 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p--  478 (554)
                      ....|..+...|++++|...|.+++..........         ....++.++|.+++..|++.+|...+.+++.+-.  
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~---------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~  564 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYH---------YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ  564 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchH---------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence            34455556667777777777777766433222111         1234678899999999999999999999987621  


Q ss_pred             ------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          479 ------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       479 ------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                            .....+..+|.++...|++++|...+.+++.+.
T Consensus       565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence                  123345678899999999999999999998863

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.67  E-value=0.18  Score=50.84  Aligned_cols=112  Identities=22%  Similarity=0.193  Sum_probs=76.4

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      ....-..+..+...|++++|.+.-..+++    - ..|+           .++.-  .-..+.+++..=+...++.+...
T Consensus       263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk----~-~~D~-----------~L~~~--~~~l~~~d~~~l~k~~e~~l~~h  324 (400)
T COG3071         263 PELVVAYAERLIRLGDHDEAQEIIEDALK----R-QWDP-----------RLCRL--IPRLRPGDPEPLIKAAEKWLKQH  324 (400)
T ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHH----h-ccCh-----------hHHHH--HhhcCCCCchHHHHHHHHHHHhC
Confidence            33444566777788889999888888887    1 2221           11111  11235677788888888888888


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~  529 (554)
                      |+++..++.+|+.++..+.|.+|...|+.|++.-|+.  .....+...-.+.
T Consensus       325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~--~~~~~la~~~~~~  374 (400)
T COG3071         325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA--SDYAELADALDQL  374 (400)
T ss_pred             CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHc
Confidence            8888888888888888888888888888888887764  3444555444443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.66  E-value=0.063  Score=56.46  Aligned_cols=103  Identities=16%  Similarity=0.218  Sum_probs=84.5

Q ss_pred             HHHhhhhhh-hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780          401 IRVTGNRLF-KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       401 ~~~~G~~~~-~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  479 (554)
                      +...+..|+ .+|+..+|+.+|..|+.+    .+..-         ...+++.+|..+.++|...+|--.+..|+.-.|.
T Consensus       215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf----~~~h~---------kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~  281 (886)
T KOG4507|consen  215 LHNMASFYWRIKGEPYQAVECAMRALHF----SSRHN---------KDIALLSLATVLHRAGFSADAAVILHAALDDADF  281 (886)
T ss_pred             HHHHHHHHHHHcCChhhhhHHHHHHhhh----CCccc---------ccchhhhHHHHHHHcccccchhheeehhccCCcc
Confidence            344555555 488999999999999984    33221         1357788999999999999998888888888887


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 008780          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP  516 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~  516 (554)
                      -..-+|-+++++.+++.|.....+|..|.+.+|....
T Consensus       282 ~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  282 FTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             ccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence            7777999999999999999999999999999997643

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.62  E-value=0.33  Score=57.02  Aligned_cols=62  Identities=11%  Similarity=0.044  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          449 LHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~-p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      .|+.+..+|.+.|++++|+..+++..+.+ +.+...|..+..+|...|++++|+..|++..+.
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            45556666667777777777777766655 345566666666677777777777766666654

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.61  E-value=0.33  Score=56.96  Aligned_cols=61  Identities=10%  Similarity=0.013  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780          449 LHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (554)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~-p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~  509 (554)
                      .|+.+..+|.+.+++++|...+.++++.. +.+...|..+..+|...|++++|+..|++..+
T Consensus       651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~  712 (1060)
T PLN03218        651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS  712 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            34444555555555555555555555432 22455555556666666666666666655543

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=95.60  E-value=0.09  Score=44.04  Aligned_cols=117  Identities=18%  Similarity=0.175  Sum_probs=78.3

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH----Hh
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV----LD  475 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a----l~  475 (554)
                      ++...|+..++.+++-.|+-+|++|+...+.+...++.+.+.+.-..+....|||..+..+|+-+-.+++.+-|    +.
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            56678999999999999999999999987777544444444445555667789999999999999999887654    55


Q ss_pred             hCCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780          476 ANPAHVKGLYRRGMA-YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a-~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~  524 (554)
                      +-|..+..-   ..+ .-.+|--..|+-+|   ++..|+  +.+.+.++.
T Consensus        83 LiPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHPN--P~iA~~vq~  124 (140)
T PF10952_consen   83 LIPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHPN--PEIARLVQH  124 (140)
T ss_pred             hccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCCC--HHHHHHHHh
Confidence            555433211   111 12344444555554   456786  445444443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.60  E-value=0.088  Score=50.35  Aligned_cols=69  Identities=14%  Similarity=0.167  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~---~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~  515 (554)
                      ..-+++-|...++.|+|.+|+..++.+....|.   ..++...++.+++..++|++|+..+++-+++.|++.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~  105 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP  105 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence            567889999999999999999999999988765   478999999999999999999999999999999884

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.56  E-value=0.073  Score=52.96  Aligned_cols=106  Identities=20%  Similarity=0.184  Sum_probs=86.8

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC---
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN---  477 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~---  477 (554)
                      ....|..+-+.++|++|+-+-.+|++..+...-.+-     -.+.+..+++.+|.++.++|+.-+|.++|+++.++.   
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~-----~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~  239 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDW-----SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH  239 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCch-----hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence            345677777888999999999999998776654441     134456788999999999999999999999998763   


Q ss_pred             ---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          478 ---PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       478 ---p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                         +-.+.++.-+|.+|...|+.+.|..-|+.|+...
T Consensus       240 Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  240 GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence               4467788889999999999999999999998864

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.55  E-value=0.13  Score=42.54  Aligned_cols=103  Identities=13%  Similarity=0.192  Sum_probs=71.6

Q ss_pred             hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHH----HHccCHHHHHHHHHHHHhhCCC
Q 008780          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL----LKLGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~----~kl~~~~~A~~~~~~al~~~p~  479 (554)
                      ++..+|++|++-+|++.-+..+.    ....+...+ .+..+...++..+|.--    .+..-...+++++.++..+.|.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~----~h~~~~~~~-~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~   76 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLIS----RHGEDESSW-LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD   76 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHH----HccCCCchH-HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence            56789999999999999999888    555442211 22222333333333211    1112256788888999999999


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      .+..+|.+|.=+-....|+++....+++|.+.
T Consensus        77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            98899999888888888888888888888763

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.34  E-value=0.27  Score=56.94  Aligned_cols=100  Identities=15%  Similarity=0.052  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHH
Q 008780          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAALSKLK  526 (554)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~-~~~~~~l~~l~  526 (554)
                      .+|..|+-.|.+-+.+++|.+.++..++.-....+.|...|..++..++-++|...+++||+--|..+ .++..-...|.
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            35677888888999999999999999988778899999999999999999999999999999988731 22333333444


Q ss_pred             HHHHHHHHHHHHHHHHhhccccc
Q 008780          527 KQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       527 ~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      -+....++.|  ..|.+++..+|
T Consensus      1611 Fk~GDaeRGR--tlfEgll~ayP 1631 (1710)
T KOG1070|consen 1611 FKYGDAERGR--TLFEGLLSAYP 1631 (1710)
T ss_pred             hhcCCchhhH--HHHHHHHhhCc
Confidence            3333445555  67777776654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.33  E-value=0.2  Score=47.44  Aligned_cols=104  Identities=12%  Similarity=0.069  Sum_probs=68.8

Q ss_pred             HHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH----hhC
Q 008780          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL----DAN  477 (554)
Q Consensus       402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al----~~~  477 (554)
                      .+++-.....-+.+.|+..|++++..+..-+         .......++...+..+.+++.|.+|-..+.+-.    +.+
T Consensus       114 leKAak~lenv~Pd~AlqlYqralavve~~d---------r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~  184 (308)
T KOG1585|consen  114 LEKAAKALENVKPDDALQLYQRALAVVEEDD---------RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD  184 (308)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHhccc---------hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh
Confidence            3444445555566777777777777543211         122335677888889999999999888777643    223


Q ss_pred             --CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          478 --PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       478 --p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                        +.--+++.-.-.+|+...+|..|..+|+...++..-+
T Consensus       185 ~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~  223 (308)
T KOG1585|consen  185 AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL  223 (308)
T ss_pred             hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc
Confidence              3344556555566666779999999999988875433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.27  E-value=0.35  Score=43.94  Aligned_cols=68  Identities=21%  Similarity=0.246  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHh-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLD-ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~-~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ..-.+.||.....+|++.+|..+|.+++. +-.+++..+.-++++.+.++++.+|...+++..+.+|.-
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~  157 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF  157 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence            34567889999999999999999999996 567889999999999999999999999999999998753

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.23  E-value=0.64  Score=44.70  Aligned_cols=68  Identities=19%  Similarity=0.230  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCC
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR-DFEMMMKVDKSS  514 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~-~~~~al~l~P~~  514 (554)
                      ..+++.+|.|++.+++|++|....+.+|..+++++..+-++-.+-..+|.-.++.. .+.+....+|.+
T Consensus       207 ~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h  275 (299)
T KOG3081|consen  207 PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH  275 (299)
T ss_pred             hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence            46788899999999999999999999999999999999999999999998877765 455566667876

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.21  E-value=0.32  Score=44.65  Aligned_cols=102  Identities=18%  Similarity=0.144  Sum_probs=78.5

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      -..+.++|+.+++.|+++.|++.|.++.+++..            ......+++++..+.+-.++|..+..+..+|-.+-
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            456789999999999999999999998885322            12346788899999999999999999999987653


Q ss_pred             C--CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          478 P--AH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       478 p--~~----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      .  .+    .+.....|.+++..++|..|...|-.++.-.
T Consensus       104 ~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  104 EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            2  22    2234456778888899999998887765433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.19  E-value=0.53  Score=48.49  Aligned_cols=53  Identities=19%  Similarity=0.218  Sum_probs=48.0

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008780          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM  507 (554)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~a  507 (554)
                      |.-++..|+|.+|..++.-+.+++| ++.++..+|.|++...+|++|..++.+.
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            4456678999999999999999999 9999999999999999999999988743

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.14  E-value=0.22  Score=58.06  Aligned_cols=105  Identities=15%  Similarity=0.164  Sum_probs=80.7

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP--  478 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p--  478 (554)
                      +...|..++..|++..|...+.+++..........       ......++.++|.++...|++++|...+.+++.+..  
T Consensus       534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~  606 (903)
T PRK04841        534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ-------LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY  606 (903)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc-------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence            34567788899999999999999998654432111       001134567889999999999999999999987632  


Q ss_pred             ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780          479 ---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (554)
Q Consensus       479 ---~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P  512 (554)
                         ....++..+|.++...|++++|...+.+++.+.+
T Consensus       607 ~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        607 QPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence               2356777799999999999999999999987643

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.12  E-value=0.18  Score=56.98  Aligned_cols=64  Identities=13%  Similarity=0.044  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      ...|..+..++.+.|+++.|...++++++++|++...|..+..+|...|++++|.+.++...+.
T Consensus       494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            3467777778888999999999999999999999999999999999999999999998887754

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.99  E-value=0.13  Score=53.18  Aligned_cols=120  Identities=18%  Similarity=0.200  Sum_probs=71.7

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc--C-----HHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--E-----CRKSI  467 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~--~-----~~~A~  467 (554)
                      +.......+.|-.+|..|+|.+|+..|+.+|..+--+.-.+.++..+++++...|.-.+-.+.+.+.  .     .++..
T Consensus       201 l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~k  280 (422)
T PF06957_consen  201 LSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQK  280 (422)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH
Confidence            4445556678999999999999999999999876555555556666666666655443333333221  1     22222


Q ss_pred             HHHHHHH-----hhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          468 EACNKVL-----DANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       468 ~~~~~al-----~~~p~~~k-a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +.++-+.     .+.|.+.- +|..--...+++++|.-|....++.|++.|..
T Consensus       281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~  333 (422)
T PF06957_consen  281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP  333 (422)
T ss_dssp             HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence            3333222     22333322 33333345567899999999999999999986

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.96  E-value=0.036  Score=57.04  Aligned_cols=121  Identities=15%  Similarity=0.076  Sum_probs=81.7

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-h-
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-A-  476 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~-~-  476 (554)
                      ..+.-+.+..|-.|+|..|.+.....--.   ..+.-   ...-+-....+++|+|..+++++.|.-+..++.+||+ . 
T Consensus       241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~---~~~g~---~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c  314 (696)
T KOG2471|consen  241 MALLLKSQLEYAHGNHPKAMKLLLVSNIH---KEAGG---TITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC  314 (696)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHhcccc---cccCc---cccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence            34455566666667766666554331110   11110   0011122345679999999999999999999999995 1 


Q ss_pred             -------C---------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          477 -------N---------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       477 -------~---------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                             .         ......+|++|..+...|+.-.|.++|.+|...--.| +.+|-.|.++-
T Consensus       315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n-PrlWLRlAEcC  379 (696)
T KOG2471|consen  315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN-PRLWLRLAECC  379 (696)
T ss_pred             HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHH
Confidence                   1         2356689999999999999999999999999986666 55666555543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.93  E-value=0.31  Score=39.20  Aligned_cols=65  Identities=26%  Similarity=0.342  Sum_probs=49.6

Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHH
Q 008780          466 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAALSKLKKQRQ  530 (554)
Q Consensus       466 A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~-~~~~~~l~~l~~~~~  530 (554)
                      .+..+++.++.+|++..+.|.+|.+++..|++++|++.+-.+++.+++.. ..+++.+-.+=....
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg   72 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG   72 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence            45678889999999999999999999999999999999999999987652 345555555444443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.91  E-value=0.21  Score=48.33  Aligned_cols=71  Identities=23%  Similarity=0.323  Sum_probs=65.9

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       444 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      .....+..|+=..++..++|+.|..+.++.+.++|.++..+--+|.+|.+++.+.-|+.++...++.-|++
T Consensus       178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~  248 (269)
T COG2912         178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD  248 (269)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence            34466788888899999999999999999999999999999999999999999999999999999998886

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.90  E-value=0.23  Score=38.34  Aligned_cols=68  Identities=16%  Similarity=0.221  Sum_probs=55.5

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+....++|-.+|.+.+..+|+..+++||+    ..+..+        .+..++--++.+|...|+|.+++.++.+=+++
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~----k~~~~~--------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALE----KITDRE--------DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHh----hcCChH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788999999999999999999999999    333321        24667778888999999999999998776654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.85  E-value=0.013  Score=57.77  Aligned_cols=57  Identities=23%  Similarity=0.364  Sum_probs=54.0

Q ss_pred             HHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       458 ~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +..|.++.|+.+|..++.++|.++..|-.|+.+++.+++...|++++..|++++|+.
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds  181 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS  181 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc
Confidence            346779999999999999999999999999999999999999999999999999976

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.79  E-value=0.049  Score=56.09  Aligned_cols=98  Identities=11%  Similarity=0.059  Sum_probs=75.9

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHH-HhhccCCC-Chh-HHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLR-DFNHVNPQ-DDE-EGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~-~l~~~~p~-~~e-e~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (554)
                      .+..+.+.|..+|+.+.|..++.+|.+||+ .+..+... ... ...........+++|.|..|+..|+...|..++.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            445567899999999999999999999995 44333211 000 001112223568999999999999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHc
Q 008780          474 LDANPAHVKGLYRRGMAYMAL  494 (554)
Q Consensus       474 l~~~p~~~ka~~~~g~a~~~l  494 (554)
                      ...-..|+..|.|++.|++..
T Consensus       362 v~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  362 VHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHHhcCcHHHHHHHHHHHHH
Confidence            999999999999999999864

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.76  E-value=0.35  Score=40.49  Aligned_cols=75  Identities=19%  Similarity=0.184  Sum_probs=58.7

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      +-.+--....+...|+|++++..-.+||.|++....-++++.+.    .+.+-+++|.++..+|+.++|+..++.+-++
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl----WIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL----WIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh----HHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            45566777888899999999999999999999865555455443    3677899999999999999999999988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.74  E-value=0.64  Score=44.56  Aligned_cols=101  Identities=16%  Similarity=0.298  Sum_probs=80.1

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA----  476 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~----  476 (554)
                      .....+.+...+.|.-.+..|.+.++    .+|..          ...+...++...++.|+.+.|..+++++-+.    
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~----~~~e~----------~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL  245 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIK----YYPEQ----------EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL  245 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHH----hCCcc----------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh
Confidence            44566777788888888888888887    34322          1678888999999999999999999965433    


Q ss_pred             C--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780          477 N--PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       477 ~--p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~  515 (554)
                      +  ..+.-.+.+.+.+|.-.++|.+|...|.+.+..||.+.
T Consensus       246 ~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~  286 (366)
T KOG2796|consen  246 DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA  286 (366)
T ss_pred             hccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch
Confidence            2  34566788888888889999999999999999999873

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.70  E-value=0.066  Score=35.68  Aligned_cols=30  Identities=17%  Similarity=0.185  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      ..+++|+|.+|..+|+|.+|+.++.+++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            356778888888888888888888777765

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.58  E-value=0.45  Score=49.69  Aligned_cols=124  Identities=16%  Similarity=0.087  Sum_probs=73.7

Q ss_pred             hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHH-----HHHccCHHHHHHHHHHHHhhC-
Q 008780          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC-----LLKLGECRKSIEACNKVLDAN-  477 (554)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~-----~~kl~~~~~A~~~~~~al~~~-  477 (554)
                      .-....+..+...-++.-++||+    ++|+-           +.+|.-||.-     .-...-|.+|++..+.++..+ 
T Consensus       174 IMq~AWRERnp~aRIkaA~eALe----i~pdC-----------AdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~  238 (539)
T PF04184_consen  174 IMQKAWRERNPQARIKAAKEALE----INPDC-----------ADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQ  238 (539)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHH----hhhhh-----------hHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhh
Confidence            34456778888899999999999    55543           2333333221     011111333333333333221 


Q ss_pred             ---------------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHH-HHHHHHHH
Q 008780          478 ---------------PA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-EPDATAALSKLKKQRQ-VKLKVRLE  538 (554)
Q Consensus       478 ---------------p~--~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~-~~~~~~~l~~l~~~~~-~~~~~~~~  538 (554)
                                     ..  ..-+-+|+|.|..++|+.++|++.++..++..|.. ...++..|-.+-..++ +.+.+++.
T Consensus       239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL  318 (539)
T PF04184_consen  239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL  318 (539)
T ss_pred             hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence                           11  24456789999999999999999999999988763 3445655555544444 55555444


Q ss_pred             HHHH
Q 008780          539 NSLK  542 (554)
Q Consensus       539 ~~y~  542 (554)
                      +.|.
T Consensus       319 ~kYd  322 (539)
T PF04184_consen  319 AKYD  322 (539)
T ss_pred             HHhc
Confidence            4454

The molecular function of this protein is uncertain.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=94.55  E-value=0.39  Score=54.30  Aligned_cols=126  Identities=13%  Similarity=0.083  Sum_probs=79.7

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCC---------------hhHHH-HHhhhH--------HHHHHHHH
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD---------------DEEGK-VFVGKR--------NLLHLNVA  454 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~---------------~ee~~-~~~~~~--------~~~~~nla  454 (554)
                      ..+......|.+.|++++|+..|++.++.  .+.|+.               -++.. .+..+.        ...|..+.
T Consensus       392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li  469 (697)
T PLN03081        392 ISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI  469 (697)
T ss_pred             eeHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence            34566777777888888888888876541  112211               11111 111111        12566777


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (554)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~  529 (554)
                      .+|.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++|++ ......|..+..+.
T Consensus       470 ~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~-~~~y~~L~~~y~~~  541 (697)
T PLN03081        470 ELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK-LNNYVVLLNLYNSS  541 (697)
T ss_pred             HHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC-CcchHHHHHHHHhC
Confidence            7888888888888877654 2334 46678888888888899999999888888888876 33344444444333

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=94.54  E-value=0.21  Score=48.40  Aligned_cols=75  Identities=17%  Similarity=0.150  Sum_probs=65.0

Q ss_pred             CChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008780          434 QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM  508 (554)
Q Consensus       434 ~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al  508 (554)
                      +-+++.+.+..+...++.-.|..|+..+.+.+|+..|++++.++|-+...+.-+-+.+..+|+--.|++.|++.-
T Consensus       266 Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         266 WAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            334456667777788888899999999999999999999999999999999999999999999888888777653

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=94.15  E-value=0.18  Score=52.04  Aligned_cols=108  Identities=9%  Similarity=0.042  Sum_probs=63.5

Q ss_pred             hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHH
Q 008780          444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRG-MAYMALGEFEEAQRDFEMMMKVDKSS-EPDATAA  521 (554)
Q Consensus       444 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g-~a~~~l~~~~~A~~~~~~al~l~P~~-~~~~~~~  521 (554)
                      ...+..++.+|.||+.+++|.+|++.+..+|..-......+..+. +--.-.+..|.....+--++.+.|.. +..+...
T Consensus       161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~  240 (404)
T PF10255_consen  161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQ  240 (404)
T ss_pred             chheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence            344678999999999999999999999998864321111122221 22222456677777888888888852 1233333


Q ss_pred             HHHH-HHHHH-HHHHHHHHHHHHhhccccccccC
Q 008780          522 LSKL-KKQRQ-VKLKVRLENSLKGCLTRSLGKFL  553 (554)
Q Consensus       522 l~~l-~~~~~-~~~~~~~~~~y~~~f~~~~~~~~  553 (554)
                      +++- ..+.. -++...  ..|..+|....=+|+
T Consensus       241 lkeky~ek~~kmq~gd~--~~f~elF~~acPKFI  272 (404)
T PF10255_consen  241 LKEKYGEKMEKMQRGDE--EAFEELFSFACPKFI  272 (404)
T ss_pred             HHHHHHHHHHHHHccCH--HHHHHHHHhhCCCcc
Confidence            3322 11111 111122  678888887654543

>PLN03077 Protein ECB2; Provisional

Probab=94.04  E-value=1.1  Score=52.20  Aligned_cols=124  Identities=16%  Similarity=0.112  Sum_probs=70.0

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCCh---------------hHH-HHHhhhH--------HHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD---------------EEG-KVFVGKR--------NLLHLNV  453 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~---------------ee~-~~~~~~~--------~~~~~nl  453 (554)
                      ...+......+.+.|+.++|+..|++..+  ..+.|+..               ++. +.+..+.        ...|..+
T Consensus       554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~--~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l  631 (857)
T PLN03077        554 VVSWNILLTGYVAHGKGSMAVELFNRMVE--SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV  631 (857)
T ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence            34577788888899999999999998665  11233321               111 1111111        1245556


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ..++.+.|++++|...+++. .+.| ++..|-.+-.++..-++.+.|....+++++++|++ ......|..+.
T Consensus       632 v~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~-~~~y~ll~n~y  701 (857)
T PLN03077        632 VDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNS-VGYYILLCNLY  701 (857)
T ss_pred             HHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-cchHHHHHHHH
Confidence            66666666666666666553 2344 34455555555556666666666666666666665 34444444443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.00  E-value=0.34  Score=41.59  Aligned_cols=41  Identities=20%  Similarity=0.246  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR  487 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~  487 (554)
                      -.+.+.||..|+++++|+.++.+++..|+.+|+|..|.-..
T Consensus        71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            46888999999999999999999999999999998876543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.94  E-value=0.32  Score=48.08  Aligned_cols=58  Identities=14%  Similarity=0.050  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008780          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM  506 (554)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~  506 (554)
                      ++--.|.|+...|-|.+|...+++++++++.+..|...++-++...+++.++.+...+
T Consensus       177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  177 VHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             HHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            4445688999999999999999999999999999999999999999999888876543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.89  E-value=0.46  Score=46.57  Aligned_cols=72  Identities=18%  Similarity=0.230  Sum_probs=66.5

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          439 GKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       439 ~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      ...+.+....++..++..+...++++.++...++.+..+|-+-++|.++-.+|+..|+...|+..|++.-++
T Consensus       145 R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         145 RRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            345667778999999999999999999999999999999999999999999999999999999999988773

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.88  E-value=1.6  Score=40.09  Aligned_cols=131  Identities=15%  Similarity=0.205  Sum_probs=82.0

Q ss_pred             CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhH------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-CChH--
Q 008780          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKR------NLLHLNVAACLLKLGECRKSIEACNKVLDANP-AHVK--  482 (554)
Q Consensus       412 g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~------~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p-~~~k--  482 (554)
                      .+...|...|.+++..++.-.|......+.+....      ....+.+|..+...+++++|+..++.++..-. .+.+  
T Consensus        48 ~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l  127 (207)
T COG2976          48 EQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL  127 (207)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH
Confidence            34558899999999877654553333333333222      12345677788889999999999999996543 2444  


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccc
Q 008780          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL-SKLKKQRQVKLKVRLENSLKGCLTR  547 (554)
Q Consensus       483 a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l-~~l~~~~~~~~~~~~~~~y~~~f~~  547 (554)
                      +-.|+|.++..++.+++|+..+...-.  ++- ......+ ..+-..+...+.++  +.|++....
T Consensus       128 ~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w-~~~~~elrGDill~kg~k~~Ar--~ay~kAl~~  188 (207)
T COG2976         128 AALRLARVQLQQKKADAALKTLDTIKE--ESW-AAIVAELRGDILLAKGDKQEAR--AAYEKALES  188 (207)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcccc--ccH-HHHHHHHhhhHHHHcCchHHHH--HHHHHHHHc
Confidence            567899999999999999998775432  111 1112222 22222222444555  677776655

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.83  E-value=0.11  Score=34.21  Aligned_cols=29  Identities=21%  Similarity=0.271  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       482 ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      .+|.++|.+.+...+|++|+.+|++||++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            57889999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PLN03077 Protein ECB2; Provisional

Probab=93.82  E-value=0.85  Score=52.97  Aligned_cols=108  Identities=12%  Similarity=0.145  Sum_probs=56.2

Q ss_pred             HhhhhhhhcCCHHHHHHHHHHHHHH----hhc-----cCCCChhHH-HHHhhhH-------HHHHHHHHHHHHHccCHHH
Q 008780          403 VTGNRLFKEGKFELAKAKYEKVLRD----FNH-----VNPQDDEEG-KVFVGKR-------NLLHLNVAACLLKLGECRK  465 (554)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~al~~----l~~-----~~p~~~ee~-~~~~~~~-------~~~~~nla~~~~kl~~~~~  465 (554)
                      ..-+.|.+.|++++|...|+.. ..    ++.     ......++. +.+.++.       ...+..+-.++.+.|++++
T Consensus       529 aLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e  607 (857)
T PLN03077        529 ALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ  607 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH
Confidence            4456777899999999888764 10    000     000111111 1111111       1123334445556666666


Q ss_pred             HHHHHHHHHhh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          466 SIEACNKVLDA---NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       466 A~~~~~~al~~---~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                      |...++...+.   .| +...|.-+..++...|++++|.+.+++. .+.|+
T Consensus       608 a~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd  656 (857)
T PLN03077        608 GLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD  656 (857)
T ss_pred             HHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence            66666665532   23 4456666667777777777777766653 34554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=93.54  E-value=0.47  Score=41.79  Aligned_cols=62  Identities=15%  Similarity=0.233  Sum_probs=51.4

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      ...+...+..+...|++..|+..+++++.    .+|.+           -.+|..+-.||..+|++.+|+..|.++.
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~----~dP~~-----------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALA----LDPYD-----------EEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHH----HSTT------------HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            45567777888899999999999999999    89988           4688889999999999999999987764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=93.49  E-value=0.95  Score=52.73  Aligned_cols=82  Identities=17%  Similarity=0.211  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~  524 (554)
                      ...|...|..+++..+-+.|.....+||.--|.  +.+..-.-|+.-+..|+-+.++..|+-.|.-+|.- .++|..+-.
T Consensus      1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR-tDlW~VYid 1642 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR-TDLWSVYID 1642 (1710)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-hhHHHHHHH
Confidence            467888999999999999999999999999887  88888889999999999999999999999999985 677776655


Q ss_pred             HHHHH
Q 008780          525 LKKQR  529 (554)
Q Consensus       525 l~~~~  529 (554)
                      ...++
T Consensus      1643 ~eik~ 1647 (1710)
T KOG1070|consen 1643 MEIKH 1647 (1710)
T ss_pred             HHHcc
Confidence            55443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.43  E-value=1.6  Score=43.34  Aligned_cols=101  Identities=17%  Similarity=0.184  Sum_probs=76.0

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-C
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-N  477 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-~  477 (554)
                      +.....+..++.+|++.+|...+.+.|.    -.|.|           ..+..-.-.+|+-+|+...-.....+++-. +
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdklL~----d~PtD-----------lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn  168 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDKLLD----DYPTD-----------LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN  168 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHHHHH----hCchh-----------hhhhhhhhhHHHhccchhhhhhHHHHhccccC
Confidence            3445667778899999999999999988    56665           222222334555677888888888888876 5


Q ss_pred             CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          478 PAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       478 p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ++-   .-.+=..+.++.+.|-|++|.+.-++|+++||.+
T Consensus       169 ~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D  208 (491)
T KOG2610|consen  169 ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFD  208 (491)
T ss_pred             CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcc
Confidence            544   3344446788999999999999999999999987

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.27  E-value=1.4  Score=44.84  Aligned_cols=114  Identities=15%  Similarity=0.118  Sum_probs=79.5

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHH-Hhhcc-CCCChh-----------------HHHHHhhhHHHHHHHHHHHHHHc
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLR-DFNHV-NPQDDE-----------------EGKVFVGKRNLLHLNVAACLLKL  460 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~-~l~~~-~p~~~e-----------------e~~~~~~~~~~~~~nla~~~~kl  460 (554)
                      ...+.++.++.+|+..+|+...+..+. .+... .+....                 ...........+++-+|.-...+
T Consensus       186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~  265 (352)
T PF02259_consen  186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL  265 (352)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence            345667777777788888888888777 33321 100000                 01122344567777778777777


Q ss_pred             ------cCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 008780          461 ------GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF-----------------EEAQRDFEMMMKVDKS  513 (554)
Q Consensus       461 ------~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~-----------------~~A~~~~~~al~l~P~  513 (554)
                            +.+++++..+.+++.++|.+.++|++.|..+..+-+.                 ..|+..|-+|+.+.+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                  8899999999999999999999999999988775332                 3377778888888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.25  E-value=2.2  Score=40.61  Aligned_cols=105  Identities=12%  Similarity=0.076  Sum_probs=71.0

Q ss_pred             HHHHHHh-hhhhhhcCCHHHHHHHHHHHHHHhhcc-CCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          398 AEKIRVT-GNRLFKEGKFELAKAKYEKVLRDFNHV-NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       398 a~~~~~~-G~~~~~~g~~~~A~~~Y~~al~~l~~~-~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      +..+..+ ++.+-..++|++|..+..+|.+..+.. .+.+          .+..|-..++....+..|.++..++++|..
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh----------AAKayEqaamLake~~klsEvvdl~eKAs~   99 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH----------AAKAYEQAAMLAKELSKLSEVVDLYEKASE   99 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3333444 444556788899988888888754332 2222          245677777888888999999999999987


Q ss_pred             hC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780          476 AN-----PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (554)
Q Consensus       476 ~~-----p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P  512 (554)
                      +.     |+-+..-.-++--....-+.++|+..|++++.+--
T Consensus       100 lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve  141 (308)
T KOG1585|consen  100 LYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVE  141 (308)
T ss_pred             HHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence            63     44344344444445566788999999999988743

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.19  E-value=6  Score=35.36  Aligned_cols=115  Identities=14%  Similarity=0.109  Sum_probs=84.3

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      ...+.+......+.++.+.+...+...--    +.|..           ..+-.--|..++..++|.+|+..++.+.+-.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrv----LRP~~-----------~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~   74 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRV----LRPEF-----------PELDLFDGWLHIVRGDWDDALRLLRELEERA   74 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHH----hCCCc-----------hHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence            44566666777777788887776654333    77776           4566677888999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      |..+-+--.++.|+..+++.+-=. +-..+++..++  +.+...++.+..+..
T Consensus        75 ~~~p~~kALlA~CL~~~~D~~Wr~-~A~evle~~~d--~~a~~Lv~~Ll~~~~  124 (160)
T PF09613_consen   75 PGFPYAKALLALCLYALGDPSWRR-YADEVLESGAD--PDARALVRALLARAD  124 (160)
T ss_pred             CCChHHHHHHHHHHHHcCChHHHH-HHHHHHhcCCC--hHHHHHHHHHHHhcc
Confidence            988877777899999999886543 34557776664  456666666655443

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.16  E-value=0.49  Score=47.99  Aligned_cols=97  Identities=14%  Similarity=0.175  Sum_probs=78.4

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN--  477 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~--  477 (554)
                      .+.+.|..|...|+++.|+++|.++-+|+.+.            +..+..+.|+-.+-.-+++|.....+..+|...-  
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~------------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~  219 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSA------------KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA  219 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcch------------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence            45678889999999999999999988876442            2236678888888889999999999888887651  


Q ss_pred             ------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008780          478 ------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMM  508 (554)
Q Consensus       478 ------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al  508 (554)
                            .-.++.....|.+++.+++|..|.+.|-.+-
T Consensus       220 ~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  220 NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                  1246778889999999999999999886654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.04  E-value=0.22  Score=33.02  Aligned_cols=30  Identities=30%  Similarity=0.396  Sum_probs=26.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      +.++.++|.+|..+|++++|+..+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            457899999999999999999999999986

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.79  E-value=1.4  Score=43.63  Aligned_cols=100  Identities=16%  Similarity=0.276  Sum_probs=73.6

Q ss_pred             hhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhh----CC---C
Q 008780          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDA----NP---A  479 (554)
Q Consensus       408 ~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~----~p---~  479 (554)
                      ..++|+++.|..+|.|+-...+...|..       ....+..++|.|...++.+ +|+.|+.+.++|+++    ..   .
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~-------~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~   75 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDM-------AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL   75 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHH-------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence            4678999999999999988655444443       2334788999999999999 999999999999987    21   1


Q ss_pred             -------ChHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCCC
Q 008780          480 -------HVKGLYRRGMAYMALGEFEEAQR---DFEMMMKVDKSS  514 (554)
Q Consensus       480 -------~~ka~~~~g~a~~~l~~~~~A~~---~~~~al~l~P~~  514 (554)
                             ..+.+..++.+|...+.++...+   .++.+-.-.|+.
T Consensus        76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~  120 (278)
T PF08631_consen   76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK  120 (278)
T ss_pred             CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC
Confidence                   24567788999999887765444   333333334554

It is also involved in sporulation [].

>PRK10941 hypothetical protein; Provisional

Probab=92.72  E-value=1.1  Score=43.99  Aligned_cols=79  Identities=15%  Similarity=0.140  Sum_probs=67.4

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  478 (554)
                      .-+.+.-..+.+.++|..|+++-+..+.    +.|++           ..-+-.+|.+|.+++.+..|+..++.-++..|
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~----l~P~d-----------p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P  246 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQ----FDPED-----------PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP  246 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence            3456677788899999999999999999    89998           44556789999999999999999999999999


Q ss_pred             CChHHHHHHHHHHH
Q 008780          479 AHVKGLYRRGMAYM  492 (554)
Q Consensus       479 ~~~ka~~~~g~a~~  492 (554)
                      +.+.+..-+.+...
T Consensus       247 ~dp~a~~ik~ql~~  260 (269)
T PRK10941        247 EDPISEMIRAQIHS  260 (269)
T ss_pred             CchhHHHHHHHHHH
Confidence            99888776665543

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.71  E-value=0.26  Score=48.14  Aligned_cols=76  Identities=13%  Similarity=0.125  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR-RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~-~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~  523 (554)
                      ..+|...+.-..+.+.|.+.-..|.+++..+|.|+..|.. .+.-+...++++.|++.|.++|+++|.+ +.+|.+.-
T Consensus       107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~-p~iw~eyf  183 (435)
T COG5191         107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS-PRIWIEYF  183 (435)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC-chHHHHHH
Confidence            4677777777778889999999999999999999999988 6777888999999999999999999998 55555433

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=92.69  E-value=1.3  Score=51.02  Aligned_cols=100  Identities=13%  Similarity=0.225  Sum_probs=73.4

Q ss_pred             HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc-------cCHHHHHHHHHHHHh
Q 008780          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-------GECRKSIEACNKVLD  475 (554)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl-------~~~~~A~~~~~~al~  475 (554)
                      .-.+++...+.|++|+..|++...    ..|.-.|-.        .+.+.+|...+..       ..+.+|+.-+++. .
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  546 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRE----SFPGRKEGY--------EAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-H  546 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhh----cCCCcccch--------HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-c
Confidence            445667778899999999999887    667654432        2334444444332       2477777777663 3


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~  515 (554)
                      --|.-+--|.-.|.+|..+++|++-+++|.-|++.-|++.
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (932)
T PRK13184        547 GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHP  586 (932)
T ss_pred             CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence            3466777888899999999999999999999999999883

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=92.60  E-value=1.9  Score=46.14  Aligned_cols=68  Identities=19%  Similarity=0.214  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~----~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      .-.++..|..+...|+.++|+..+++++.....    ..-++|.+|-+++.+.+|++|..+|.+.++.+.-+
T Consensus       267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS  338 (468)
T PF10300_consen  267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS  338 (468)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH
Confidence            557788999999999999999999999854332    34578999999999999999999999999976543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=92.46  E-value=1.6  Score=35.15  Aligned_cols=49  Identities=20%  Similarity=0.283  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          417 AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       417 A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      .+...++++.    .+|.+           ..+.+.+|.+++..|+|++|++.+-.++..++++
T Consensus         7 ~~~al~~~~a----~~P~D-----------~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALA----ANPDD-----------LDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHH----HSTT------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            3556677777    78888           7889999999999999999999999999999876

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.38  E-value=1.5  Score=35.44  Aligned_cols=56  Identities=18%  Similarity=0.331  Sum_probs=46.6

Q ss_pred             HHHccCHHHHHHHHHHHHhhCC----C-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780          457 LLKLGECRKSIEACNKVLDANP----A-----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (554)
Q Consensus       457 ~~kl~~~~~A~~~~~~al~~~p----~-----~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P  512 (554)
                      ..+.++|..|++.+.+.+....    .     ..-++.++|..+...|++++|+..++.|+++..
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            4578999999998888876532    1     256889999999999999999999999999843

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.20  E-value=0.9  Score=36.81  Aligned_cols=64  Identities=13%  Similarity=0.195  Sum_probs=48.2

Q ss_pred             hhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       408 ~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      ..+.++|..|++.+.+..++.........      ......+..|+|.++...|++++|+..+++|+.+-
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            45789999999999998885432211110      11234578899999999999999999999999874

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=91.43  E-value=0.37  Score=45.22  Aligned_cols=60  Identities=23%  Similarity=0.306  Sum_probs=53.7

Q ss_pred             hhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          406 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       406 ~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      ..+++.++.+.|.+.|.+|+.    +.|..           ..-|+.++....|.++++.|...+.++|++||.+
T Consensus         3 ~~~~~~~D~~aaaely~qal~----lap~w-----------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALE----LAPEW-----------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhh----cCchh-----------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            346678999999999999999    77765           6789999999999999999999999999999865

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.09  E-value=1.7  Score=33.52  Aligned_cols=37  Identities=24%  Similarity=0.325  Sum_probs=32.1

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV  431 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~  431 (554)
                      .+.|..+..++..+=+.|+|.+|+.+|++|++.|..+
T Consensus         3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~   39 (75)
T cd02682           3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI   39 (75)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            3567788889999999999999999999999987653

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=91.01  E-value=2.2  Score=47.56  Aligned_cols=109  Identities=18%  Similarity=0.157  Sum_probs=83.3

Q ss_pred             HHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCh
Q 008780          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (554)
Q Consensus       402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~  481 (554)
                      --+|-.+++.|++++|..+.+ ++.   ...+.|           -..+.-+-.||..++++++|...|++++..+|+ .
T Consensus        47 vLkaLsl~r~gk~~ea~~~Le-~~~---~~~~~D-----------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-e  110 (932)
T KOG2053|consen   47 VLKALSLFRLGKGDEALKLLE-ALY---GLKGTD-----------DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-E  110 (932)
T ss_pred             HHHHHHHHHhcCchhHHHHHh-hhc---cCCCCc-----------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-H
Confidence            346677889999999984333 333   244444           245666788999999999999999999999998 9


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       482 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      +-++.+=.||.+.+.|.+-.+.--+..+.-|++.--.|.....+-
T Consensus       111 ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil  155 (932)
T KOG2053|consen  111 ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL  155 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence            999999999999999988777777777778877545555544443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.80  E-value=2.4  Score=45.57  Aligned_cols=69  Identities=22%  Similarity=0.190  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ...++-|-|.-++++++|..++++|...+..-|      ..+|....++.||..+.+.+.|.+.++.|-+.+|.+
T Consensus       353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~  427 (872)
T KOG4814|consen  353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS  427 (872)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc
Confidence            345677889999999999999999999997755      357888899999999999999999999999999987

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.78  E-value=3.8  Score=41.63  Aligned_cols=107  Identities=14%  Similarity=0.085  Sum_probs=75.6

Q ss_pred             hhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHH
Q 008780          407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR  486 (554)
Q Consensus       407 ~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~  486 (554)
                      ..+..|+|+.|+++.+....... +.+..      ....+..++...|...+ .-+...|..+..+++++.|+.+-+-..
T Consensus       197 ~r~~~gdWd~AlkLvd~~~~~~v-ie~~~------aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~  268 (531)
T COG3898         197 ARCAAGDWDGALKLVDAQRAAKV-IEKDV------AERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVV  268 (531)
T ss_pred             HHHhcCChHHHHHHHHHHHHHHh-hchhh------HHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHH
Confidence            34567788888877766554211 11111      12223344444444433 346899999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008780          487 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (554)
Q Consensus       487 ~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~  523 (554)
                      -+.+++..|+..++-..++.+.+.+|+  +++.....
T Consensus       269 AAralf~d~~~rKg~~ilE~aWK~ePH--P~ia~lY~  303 (531)
T COG3898         269 AARALFRDGNLRKGSKILETAWKAEPH--PDIALLYV  303 (531)
T ss_pred             HHHHHHhccchhhhhhHHHHHHhcCCC--hHHHHHHH
Confidence            999999999999999999999999997  44544433

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=90.77  E-value=6.2  Score=39.99  Aligned_cols=105  Identities=14%  Similarity=0.139  Sum_probs=70.0

Q ss_pred             HHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHH-HHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 008780          419 AKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA-CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF  497 (554)
Q Consensus       419 ~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~-~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~  497 (554)
                      ..|++.++    .+|.|-+.+-.+..+.-.+...... --....-.+..+..+++||+.+|++.+.+..+-.+...+.+-
T Consensus         6 ~el~~~v~----~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~   81 (321)
T PF08424_consen    6 AELNRRVR----ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS   81 (321)
T ss_pred             HHHHHHHH----hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence            34667777    7888844433332222221110000 001112256777889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780          498 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (554)
Q Consensus       498 ~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~  528 (554)
                      ++..+-+++++..+|++ ..++...-...+.
T Consensus        82 ~~l~~~we~~l~~~~~~-~~LW~~yL~~~q~  111 (321)
T PF08424_consen   82 EKLAKKWEELLFKNPGS-PELWREYLDFRQS  111 (321)
T ss_pred             HHHHHHHHHHHHHCCCC-hHHHHHHHHHHHH
Confidence            99999999999999987 5666655544443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.75  E-value=1.7  Score=48.40  Aligned_cols=120  Identities=15%  Similarity=0.170  Sum_probs=76.7

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc-------cCHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-------GECRKSI  467 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl-------~~~~~A~  467 (554)
                      +.......+.|-.+...|+|.+|+++|+.+|-.+.-+--++.++....+++...+.-.+.-....+       ....+++
T Consensus       988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen  988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence            556677789999999999999999999999874433333444444455555444432222222211       2233431


Q ss_pred             --HHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          468 --EACNKVLDANPA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       468 --~~~~~al~~~p~-~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                        ..|=.-..+.|- ..-|+.-.-.+++.+++|..|.....+.|++.|..
T Consensus      1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~ 1117 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSP 1117 (1202)
T ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Confidence              111122344453 34455556678899999999999999999999976

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=90.71  E-value=2  Score=42.66  Aligned_cols=99  Identities=8%  Similarity=-0.010  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~-l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      +|..+..+..+.+..+.|...+.+|++..+.....|...|..-+. .++.+.|...|+.+++.-|.+ ..++........
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-~~~~~~Y~~~l~   81 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-PDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHH
Confidence            455555666677779999999999997777778889988888666 566666999999999999987 455544443333


Q ss_pred             HHHHHHHHHHHHHHHhhcccccc
Q 008780          528 QRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       528 ~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      ......+.|  ..|++.....+.
T Consensus        82 ~~~d~~~aR--~lfer~i~~l~~  102 (280)
T PF05843_consen   82 KLNDINNAR--ALFERAISSLPK  102 (280)
T ss_dssp             HTT-HHHHH--HHHHHHCCTSSC
T ss_pred             HhCcHHHHH--HHHHHHHHhcCc
Confidence            333556666  788888776544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.55  E-value=2.8  Score=37.45  Aligned_cols=82  Identities=16%  Similarity=0.088  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ...+..+..+-++.++..++...+..+-.+.|+++..-.--|..++..|+|.+|+..|+.+..-.|.. +.++..+.-+-
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL   88 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHH
Confidence            55677788888899999999999999999999999999999999999999999999999988888876 66676666655


Q ss_pred             HHH
Q 008780          527 KQR  529 (554)
Q Consensus       527 ~~~  529 (554)
                      ..+
T Consensus        89 ~~~   91 (160)
T PF09613_consen   89 YAL   91 (160)
T ss_pred             HHc
Confidence            444

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=89.86  E-value=3  Score=39.70  Aligned_cols=118  Identities=14%  Similarity=0.116  Sum_probs=69.3

Q ss_pred             hhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCH-HHHH-HHHHHHHh-hC-CCChHH
Q 008780          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC-RKSI-EACNKVLD-AN-PAHVKG  483 (554)
Q Consensus       408 ~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~-~~A~-~~~~~al~-~~-p~~~ka  483 (554)
                      +|..|+|+.|+..-..||+.=. ..|+.  -........+.-..+.|....+.|+. +-.. ..+..+.. .+ |+-+.|
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l-~~Pd~--f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA  169 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGL-TMPDQ--FRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA  169 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCC-CCCcc--ccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence            3567899999999999998311 12221  00112223344455566666666652 1111 11111111 11 444444


Q ss_pred             --HHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          484 --LYRRGMAYM---------ALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       484 --~~~~g~a~~---------~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                        |-..|.+++         ..++...|+..|++|+.+||+  .-++..+.++.++++
T Consensus       170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k--~GVK~~i~~l~~~lr  225 (230)
T PHA02537        170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK--CGVKKDIERLERRLK  225 (230)
T ss_pred             HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC--CChHHHHHHHHHHHh
Confidence              444555552         456888999999999999987  468888888887775

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=89.68  E-value=8  Score=43.01  Aligned_cols=134  Identities=19%  Similarity=0.191  Sum_probs=95.9

Q ss_pred             CChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC---CCCh--------hHHHHHhhhHHHHHHHHHHHH
Q 008780          389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN---PQDD--------EEGKVFVGKRNLLHLNVAACL  457 (554)
Q Consensus       389 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~---p~~~--------ee~~~~~~~~~~~~~nla~~~  457 (554)
                      ++.++..  +-.+.--|-.....+..+.|.+++.++++.++...   +...        +.......+...++..++.|.
T Consensus       294 l~~~~l~--~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~  371 (608)
T PF10345_consen  294 LPKEELY--ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCN  371 (608)
T ss_pred             cCHHHHH--HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            3444443  34455567788888888899999999999887755   1111        112234455667888899999


Q ss_pred             HHccCHHHHHHHHHHHHhhC---C------CChHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHhCCCChHHHHH
Q 008780          458 LKLGECRKSIEACNKVLDAN---P------AHVKGLYRRGMAYMALGEFEEAQRDFE--------MMMKVDKSSEPDATA  520 (554)
Q Consensus       458 ~kl~~~~~A~~~~~~al~~~---p------~~~ka~~~~g~a~~~l~~~~~A~~~~~--------~al~l~P~~~~~~~~  520 (554)
                      +-+++|..|......+....   |      ..+..+|-.|..+...|+.+.|...|.        .+....+.++-.+-.
T Consensus       372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila  451 (608)
T PF10345_consen  372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA  451 (608)
T ss_pred             HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence            99999999999888877653   2      247789999999999999999999998        666666665444444


Q ss_pred             HHHH
Q 008780          521 ALSK  524 (554)
Q Consensus       521 ~l~~  524 (554)
                      .|+.
T Consensus       452 ~LNl  455 (608)
T PF10345_consen  452 ALNL  455 (608)
T ss_pred             HHHH
Confidence            4443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=89.67  E-value=4.3  Score=41.27  Aligned_cols=94  Identities=17%  Similarity=0.166  Sum_probs=70.3

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      +...+....-.|+|+.|.+.|+.-++     +|+.       +   ..-+-.|-....++|.++.|+.+..++-+..|.-
T Consensus       123 hlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEt-------R---llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l  187 (531)
T COG3898         123 HLLEAQAALLEGDYEDARKKFEAMLD-----DPET-------R---LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQL  187 (531)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHhc-----ChHH-------H---HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCC
Confidence            34556666677888888888887666     3322       1   1111122223457899999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (554)
Q Consensus       481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~  509 (554)
                      +.++.-.-...+..|+|+.|++.++....
T Consensus       188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         188 PWAARATLEARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             chHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            99999999999999999999998876554

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.56  E-value=0.55  Score=32.07  Aligned_cols=25  Identities=24%  Similarity=0.469  Sum_probs=21.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780          485 YRRGMAYMALGEFEEAQRDFEMMMK  509 (554)
Q Consensus       485 ~~~g~a~~~l~~~~~A~~~~~~al~  509 (554)
                      +.+|.+|..+|+++.|+..++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            6788999999999999999998885

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=89.51  E-value=2.7  Score=39.79  Aligned_cols=81  Identities=15%  Similarity=0.115  Sum_probs=49.0

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      ++..++....+.-+..|+..|.+|+..-+  .|...       .....+.+-+|..+.++|++++|+.++.+++...-.+
T Consensus       128 yR~~~~~~~E~~fl~~Al~~y~~a~~~e~--~~~~~-------~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  128 YRDLGDEENEKRFLRKALEFYEEAYENED--FPIEG-------MDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             hhccCCHHHHHHHHHHHHHHHHHHHHhCc--CCCCC-------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            33444433333345566666666665211  11110       0115688899999999999999999999999875433


Q ss_pred             h-HHHHHHHHH
Q 008780          481 V-KGLYRRGMA  490 (554)
Q Consensus       481 ~-ka~~~~g~a  490 (554)
                      . ..+..+|+-
T Consensus       199 ~~~~l~~~AR~  209 (214)
T PF09986_consen  199 KEPKLKDMARD  209 (214)
T ss_pred             CcHHHHHHHHH
Confidence            3 355555543

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.47  E-value=24  Score=37.90  Aligned_cols=140  Identities=17%  Similarity=0.220  Sum_probs=82.8

Q ss_pred             CchHHHHHHHhcCCcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccccCCCCCCCChhhhhHHHHHHHHhhhh
Q 008780          328 LVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNR  407 (554)
Q Consensus       328 ~v~~g~~~~l~~M~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~  407 (554)
                      +.-..|..++..|.++....+.+..-|                                   -.+..+..|...+..|..
T Consensus       256 qaq~~F~~av~~~d~n~v~~lL~ssPY-----------------------------------HvdsLLqva~~~r~qgD~  300 (665)
T KOG2422|consen  256 QAQRDFYLAVIVHDPNNVLILLISSPY-----------------------------------HVDSLLQVADIFRFQGDR  300 (665)
T ss_pred             HHHHHHHHHHhhcCCcceeeeeccCCc-----------------------------------chhHHHHHHHHHHHhcch
Confidence            356778888888888888777764322                                   234456667777777777


Q ss_pred             hhhcCCHHHHHHHHHHHHHHhhc-------cCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-
Q 008780          408 LFKEGKFELAKAKYEKVLRDFNH-------VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-  479 (554)
Q Consensus       408 ~~~~g~~~~A~~~Y~~al~~l~~-------~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~-  479 (554)
                      -..++-..+|+-.+.+|+.-.=.       +.-..+ +...+    ..+++.--..+.+.|.|.-|.++|+-.+.++|. 
T Consensus       301 e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~-eNR~F----yL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~e  375 (665)
T KOG2422|consen  301 EMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYP-ENRQF----YLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSE  375 (665)
T ss_pred             hhHHHHHHHHHHHHHHHhccccccccccccCcccch-hhHHH----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcC
Confidence            77677777777777777652100       000111 11222    122222233344789999999999999999997 


Q ss_pred             ChHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 008780          480 HVKGLYRRGMAYM-ALGEFEEAQRDFEMM  507 (554)
Q Consensus       480 ~~ka~~~~g~a~~-~l~~~~~A~~~~~~a  507 (554)
                      ++-+...+--.|. ...+|.--+..++.+
T Consensus       376 DPl~~l~~ID~~ALrareYqwiI~~~~~~  404 (665)
T KOG2422|consen  376 DPLGILYLIDIYALRAREYQWIIELSNEP  404 (665)
T ss_pred             CchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            6665444433332 234555555444433

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=89.37  E-value=10  Score=39.00  Aligned_cols=106  Identities=10%  Similarity=0.100  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDA----NPAHVKGLYRRGMAYMA---LGEFEEAQRDFEMMMKVDKSSEPDAT  519 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~----~p~~~ka~~~~g~a~~~---l~~~~~A~~~~~~al~l~P~~~~~~~  519 (554)
                      ..+..|+-.+|....+|+.-+...+..-.+    -++....-+..|.|+..   .|+.++|+..+..++.-..++.++..
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            456678888899999999988888776666    34566677888888888   89999999999997766555556766


Q ss_pred             HHHHHHHHHHHHH-------HHHHHHHHHHhhcccccccc
Q 008780          520 AALSKLKKQRQVK-------LKVRLENSLKGCLTRSLGKF  552 (554)
Q Consensus       520 ~~l~~l~~~~~~~-------~~~~~~~~y~~~f~~~~~~~  552 (554)
                      -.+..+.+.+-.+       .-.+....|++.|...++-|
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y  260 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY  260 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence            6666666555311       12222378999888776554

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.34  E-value=8.3  Score=39.17  Aligned_cols=118  Identities=20%  Similarity=0.223  Sum_probs=84.9

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      +.+..+...+..+.+.|++..|.....++..    ..+...       .....+.+..|..+...|+-.+|+...+..+.
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~----~~~~~~-------~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQ----LNPSSE-------SLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhc----cCCccc-------CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3456677888889999999999999988877    321110       00145666667777788888888888877776


Q ss_pred             h--C--------------------------------CCChHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCh
Q 008780          476 A--N--------------------------------PAHVKGLYRRGMAYMAL------GEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       476 ~--~--------------------------------p~~~ka~~~~g~a~~~l------~~~~~A~~~~~~al~l~P~~~  515 (554)
                      .  .                                ...+++++.+|.-...+      +.+++++..|+.|.+++|++.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  292 (352)
T PF02259_consen  213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE  292 (352)
T ss_pred             HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence            1  0                                11256788888888888      899999999999999999873


Q ss_pred             HHHHHHHHHH
Q 008780          516 PDATAALSKL  525 (554)
Q Consensus       516 ~~~~~~l~~l  525 (554)
                       .++..+...
T Consensus       293 -k~~~~~a~~  301 (352)
T PF02259_consen  293 -KAWHSWALF  301 (352)
T ss_pred             -HHHHHHHHH
Confidence             344444433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.79  E-value=7  Score=40.89  Aligned_cols=99  Identities=20%  Similarity=0.261  Sum_probs=71.6

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH-h
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL-D  475 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al-~  475 (554)
                      .+..+.-.|-....-+.|+.|...|..|.+..+.            .++.+.+..|+|..|++.++-+.    +.+++ .
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~  429 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAED----LYKALDL  429 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHH----HHHHHHh
Confidence            4556677788888888999999999999984322            23456788899999998766443    22222 2


Q ss_pred             hCCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          476 ANPAH----------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       476 ~~p~~----------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      +.|.|          ..++|-.|.-.+..+++.||...+.+.|+..
T Consensus       430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            34432          3467888888888999999999999888875

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.76  E-value=1.4  Score=28.58  Aligned_cols=33  Identities=21%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 008780          482 KGLYRRGMAYMALGEFEEAQRD--FEMMMKVDKSS  514 (554)
Q Consensus       482 ka~~~~g~a~~~l~~~~~A~~~--~~~al~l~P~~  514 (554)
                      +.++-+|..+...|++++|+..  |+-+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4566667777777777777777  43666666543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.54  E-value=11  Score=39.39  Aligned_cols=101  Identities=17%  Similarity=0.067  Sum_probs=80.5

Q ss_pred             HHHHHHHHhhhhhh-hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHH
Q 008780          396 DEAEKIRVTGNRLF-KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKV  473 (554)
Q Consensus       396 ~~a~~~~~~G~~~~-~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~a  473 (554)
                      -.|....+.|..+| -..+++.|..+.++|......+...        ...+...+.-+|.||.... .+..|.....++
T Consensus        44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f--------ydvKf~a~SlLa~lh~~~~~s~~~~KalLrka  115 (629)
T KOG2300|consen   44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF--------YDVKFQAASLLAHLHHQLAQSFPPAKALLRKA  115 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH--------HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            35677778887776 4789999999999999865544332        2344677888999999888 799999999999


Q ss_pred             HhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHH
Q 008780          474 LDANPAH----VKGLYRRGMAYMALGEFEEAQRDF  504 (554)
Q Consensus       474 l~~~p~~----~ka~~~~g~a~~~l~~~~~A~~~~  504 (554)
                      +++...+    .+.+|.+++.+.--.+|..|++.+
T Consensus       116 ielsq~~p~wsckllfQLaql~~idkD~~sA~elL  150 (629)
T KOG2300|consen  116 IELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL  150 (629)
T ss_pred             HHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence            9987654    567888999999999999998764

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.52  E-value=3.1  Score=32.32  Aligned_cols=35  Identities=20%  Similarity=0.219  Sum_probs=30.6

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~  430 (554)
                      ..|..+..+|..+=+.|+|.+|+.+|.+||++|..
T Consensus         4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~   38 (77)
T cd02683           4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ   38 (77)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            45677788889999999999999999999998765

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=88.25  E-value=8.7  Score=41.22  Aligned_cols=104  Identities=22%  Similarity=0.088  Sum_probs=76.1

Q ss_pred             hhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCCCChHH
Q 008780          405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEACNKVLDANPAHVKG  483 (554)
Q Consensus       405 G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~-~~~A~~~~~~al~~~p~~~ka  483 (554)
                      .-.+...+....|......++.    .+|..           +.++.|++.+....+. +.-+...+..+....|.|...
T Consensus        74 si~~~~~~~~~~~~~~~~~~l~----~~~~~-----------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~  138 (620)
T COG3914          74 SILLAPLADSTLAFLAKRIPLS----VNPEN-----------CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEF  138 (620)
T ss_pred             HhhccccccchhHHHHHhhhHh----cCccc-----------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHH
Confidence            3334444555555555666665    55555           7899999998888776 445555666699999999988


Q ss_pred             HHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780          484 LYRR------GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (554)
Q Consensus       484 ~~~~------g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~  524 (554)
                      +..+      ++.+..+++..+|...+.++..+.|.+ ..+...+..
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~-~~~~~~~~~  184 (620)
T COG3914         139 LGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY-PRVLGALMT  184 (620)
T ss_pred             HhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh-hhhHhHHHH
Confidence            8887      888999999999999999999999988 444333333

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=88.17  E-value=8.7  Score=41.65  Aligned_cols=150  Identities=17%  Similarity=0.149  Sum_probs=97.7

Q ss_pred             hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChh----------HHHHHhhhHHHHHHHHHHHHHHccCH
Q 008780          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----------EGKVFVGKRNLLHLNVAACLLKLGEC  463 (554)
Q Consensus       394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~e----------e~~~~~~~~~~~~~nla~~~~kl~~~  463 (554)
                      .-+.+..+.+-|..-.+..+++.|+.+.++|..    . |...+          .....+.  ..+|.-.+..--..|-+
T Consensus       421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~----v-P~~~~~~~yd~~~pvQ~rlhrS--lkiWs~y~DleEs~gtf  493 (835)
T KOG2047|consen  421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATH----V-PTNPELEYYDNSEPVQARLHRS--LKIWSMYADLEESLGTF  493 (835)
T ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc----C-CCchhhhhhcCCCcHHHHHHHh--HHHHHHHHHHHHHhccH
Confidence            344577788888888899999999999999886    2 22211          1111111  23455555555566778


Q ss_pred             HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHH-HHHHHHHHH--HHHHHHHHH
Q 008780          464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK-SSEPDATAA-LSKLKKQRQ--VKLKVRLEN  539 (554)
Q Consensus       464 ~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P-~~~~~~~~~-l~~l~~~~~--~~~~~~~~~  539 (554)
                      +.....|+++|.+.--.+....+.|.-+....-|++|-+.|++.+.|-+ .+..+++.. |.+..++..  .-+.+|  .
T Consensus       494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR--d  571 (835)
T KOG2047|consen  494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR--D  571 (835)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH--H
Confidence            8888888888888777788888888888888888888888888777743 233455544 223333332  444555  6


Q ss_pred             HHHhhcccccccc
Q 008780          540 SLKGCLTRSLGKF  552 (554)
Q Consensus       540 ~y~~~f~~~~~~~  552 (554)
                      .|...+...|..+
T Consensus       572 LFEqaL~~Cpp~~  584 (835)
T KOG2047|consen  572 LFEQALDGCPPEH  584 (835)
T ss_pred             HHHHHHhcCCHHH
Confidence            7777777666554

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.99  E-value=0.76  Score=27.32  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 008780          482 KGLYRRGMAYMALGEFEEAQRDFE  505 (554)
Q Consensus       482 ka~~~~g~a~~~l~~~~~A~~~~~  505 (554)
                      .+++.+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            345666666666666666665543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=87.73  E-value=2.9  Score=31.56  Aligned_cols=36  Identities=17%  Similarity=0.241  Sum_probs=31.1

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~  430 (554)
                      ++.|..+..+|..+=+.|+|.+|+.+|.+|+++|..
T Consensus         2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~   37 (69)
T PF04212_consen    2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ   37 (69)
T ss_dssp             HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            456777888899999999999999999999998754

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=87.73  E-value=7.9  Score=39.85  Aligned_cols=98  Identities=12%  Similarity=0.167  Sum_probs=71.7

Q ss_pred             cCCHHHHHHHHHHHHHHhhccCCCChhHH-HHH--hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh---------h--
Q 008780          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEG-KVF--VGKRNLLHLNVAACLLKLGECRKSIEACNKVLD---------A--  476 (554)
Q Consensus       411 ~g~~~~A~~~Y~~al~~l~~~~p~~~ee~-~~~--~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~---------~--  476 (554)
                      ...|.++-..|..++...      |.+.- ..+  ....+..+..++..+..+|++..|.+.+++||-         .  
T Consensus         7 s~~Y~~~q~~F~~~v~~~------Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~   80 (360)
T PF04910_consen    7 SKAYQEAQEQFYAAVQSH------DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSP   80 (360)
T ss_pred             CHHHHHHHHHHHHHHHcc------CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            345677777777776621      11110 000  111367889999999999999999999999871         1  


Q ss_pred             ---C------------CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          477 ---N------------PAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       477 ---~------------p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                         +            +.|   -.|+||..+.+.+.|-+..|.+..+-.+.+||.+
T Consensus        81 ~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~  136 (360)
T PF04910_consen   81 FRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE  136 (360)
T ss_pred             hhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC
Confidence               1            222   4589999999999999999999999999999994

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.18  E-value=3.2  Score=32.07  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=31.8

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~  430 (554)
                      ++.|..+..+|...=..|+|++|+.+|..||++|..
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            567778888999999999999999999999998765

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.99  E-value=8.9  Score=42.79  Aligned_cols=32  Identities=28%  Similarity=0.413  Sum_probs=28.4

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDF  428 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l  428 (554)
                      .+..++..|+.+|++|+|++|...|-+++.++
T Consensus       367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l  398 (933)
T KOG2114|consen  367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFL  398 (933)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence            35668899999999999999999999998864

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.85  E-value=3.6  Score=31.80  Aligned_cols=37  Identities=16%  Similarity=0.122  Sum_probs=31.8

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV  431 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~  431 (554)
                      +..|..+..+|...=..++|.+|..+|..+++++...
T Consensus         3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~   39 (75)
T cd02677           3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKG   39 (75)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            4567778888889999999999999999999987653

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=86.72  E-value=7.8  Score=38.12  Aligned_cols=54  Identities=19%  Similarity=0.204  Sum_probs=47.6

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008780          453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM  506 (554)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~  506 (554)
                      -+.-....+++.+|...+..++..+|++..+..-++.|+...|+.+.|...|..
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            344556789999999999999999999999999999999999999988876654

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=86.71  E-value=1.1  Score=46.33  Aligned_cols=60  Identities=20%  Similarity=0.432  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhh---------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          450 HLNVAACLLKLGECRKSIEACNKVLDA---------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       450 ~~nla~~~~kl~~~~~A~~~~~~al~~---------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      ...|...|.-+|+|..|+...+.. ++         -+.+...+|..|.||+++++|.+|++.|...|-.
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y  193 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY  193 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667778899999999976553 22         2457788999999999999999999999988763

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.31  E-value=6.1  Score=30.56  Aligned_cols=35  Identities=14%  Similarity=0.111  Sum_probs=30.7

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~  430 (554)
                      ..|..+-.+|..+=+.|+|.+|+.+|..|+++|..
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            45777888899999999999999999999998755

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.00  E-value=5.6  Score=30.63  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=32.0

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~  430 (554)
                      ++.|..+..+|...=..|+|.+|+.+|.+|++++..
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   38 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            567888889999999999999999999999998755

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.83  E-value=6.8  Score=42.95  Aligned_cols=92  Identities=15%  Similarity=0.161  Sum_probs=71.7

Q ss_pred             HHhhhhhhhc----C-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc---CHHHHHHHHHHH
Q 008780          402 RVTGNRLFKE----G-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKV  473 (554)
Q Consensus       402 ~~~G~~~~~~----g-~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~a  473 (554)
                      ...|..+++.    . ++..|+..|.+|.+    +..             ..+.+++|.||..-.   ++.+|..++..|
T Consensus       292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~----~g~-------------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~A  354 (552)
T KOG1550|consen  292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAE----LGN-------------PDAQYLLGVLYETGTKERDYRRAFEYYSLA  354 (552)
T ss_pred             cHHHHHHhcCCCCccccHHHHHHHHHHHHh----cCC-------------chHHHHHHHHHHcCCccccHHHHHHHHHHH
Confidence            3466666653    2 78889999999888    443             347788888888765   578899988887


Q ss_pred             HhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 008780          474 LDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDK  512 (554)
Q Consensus       474 l~~~p~~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l~P  512 (554)
                      ...  .+..|.+++|.+|..    ..+...|..+|++|.+.++
T Consensus       355 a~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~  395 (552)
T KOG1550|consen  355 AKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN  395 (552)
T ss_pred             HHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence            664  578999999999886    4688999999999998873

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.63  E-value=6.5  Score=30.19  Aligned_cols=36  Identities=17%  Similarity=0.274  Sum_probs=30.6

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~  430 (554)
                      ++.|..+...|...=..|+|++|+.+|..|++.|..
T Consensus         3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~   38 (75)
T cd02656           3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            456677778888888999999999999999998765

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=85.52  E-value=11  Score=39.28  Aligned_cols=97  Identities=20%  Similarity=0.175  Sum_probs=57.9

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      .-..-...+..|+...|.+....+|+    ..|.+           .......+..+..+|.|+.|.....-+-..-..-
T Consensus       292 ~~~si~k~~~~gd~~aas~~~~~~lr----~~~~~-----------p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~  356 (831)
T PRK15180        292 ITLSITKQLADGDIIAASQQLFAALR----NQQQD-----------PVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT  356 (831)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHH----hCCCC-----------chhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC
Confidence            33344445667778788877777777    55555           2233445556666677777766665554444444


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (554)
Q Consensus       481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P  512 (554)
                      .+++.-+-..+..++++++|.......|.-+-
T Consensus       357 ~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei  388 (831)
T PRK15180        357 DSTLRCRLRSLHGLARWREALSTAEMMLSNEI  388 (831)
T ss_pred             chHHHHHHHhhhchhhHHHHHHHHHHHhcccc
Confidence            55555555666666777776666555554433

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=85.22  E-value=7.3  Score=30.02  Aligned_cols=37  Identities=16%  Similarity=0.246  Sum_probs=31.8

Q ss_pred             hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (554)
Q Consensus       394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~  430 (554)
                      .++.|..+..+|..+=..|++++|+.+|.+|++.+..
T Consensus         4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~   40 (77)
T smart00745        4 YLSKAKELISKALKADEAGDYEEALELYKKAIEYLLE   40 (77)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3556777888888888999999999999999998765

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=85.00  E-value=4.2  Score=39.47  Aligned_cols=64  Identities=13%  Similarity=0.250  Sum_probs=44.1

Q ss_pred             HHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      .+.|..+|+.|+|++|+..|+.++..... ..        ...+...++..+..|+.++++.+..+..|-+++
T Consensus       182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~-eg--------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  182 LEMAEEYFRLGDYDKALKLLEPAASSYRR-EG--------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHh-CC--------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            47788888888888888888887653221 11        123445677778888888888888887776655

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=84.67  E-value=12  Score=37.47  Aligned_cols=120  Identities=15%  Similarity=0.137  Sum_probs=84.3

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHH--HHHHHHHHHHh
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR--KSIEACNKVLD  475 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~--~A~~~~~~al~  475 (554)
                      |..-.+.|..+....+|..|..+|-+|.+-+..++..    .+.     ...+-.+-.|...++..+  .++-..+.+++
T Consensus       209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~----v~A-----~~sLKYMlLcKIMln~~ddv~~lls~K~~l~  279 (411)
T KOG1463|consen  209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDD----VKA-----LTSLKYMLLCKIMLNLPDDVAALLSAKLALK  279 (411)
T ss_pred             HHHHHhccceeecccccchHHHHHHHHHccccccCCc----HHH-----HHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh
Confidence            3444577888888899999999999998855544322    111     223333445555566554  46667778899


Q ss_pred             hCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          476 ANPAHVKGLYRRGMAYMA--LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~--l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      ++.....|+...+.|+..  +.+|+.|+++|+.=|.-||    -++..++.|...+-
T Consensus       280 y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~----ivr~Hl~~Lyd~lL  332 (411)
T KOG1463|consen  280 YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP----IVRSHLQSLYDNLL  332 (411)
T ss_pred             ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh----HHHHHHHHHHHHHH
Confidence            888899999999999876  5799999999998888775    35666666655443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=84.45  E-value=6.6  Score=40.36  Aligned_cols=68  Identities=16%  Similarity=0.195  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHH---ccCHHHHHHHHHHHH-hhCCCChHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC
Q 008780          447 NLLHLNVAACLLK---LGECRKSIEACNKVL-DANPAHVKGLYRRGMAYMAL---------GEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       447 ~~~~~nla~~~~k---l~~~~~A~~~~~~al-~~~p~~~ka~~~~g~a~~~l---------~~~~~A~~~~~~al~l~P~  513 (554)
                      ..+.+..|.++.+   .|+.++|+..+..++ ..++.++..+..+|.+|-.+         ...+.|+..|.++.+++|+
T Consensus       179 ~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~  258 (374)
T PF13281_consen  179 HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD  258 (374)
T ss_pred             hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence            3456677888888   899999999999954 55678899999999998753         3578999999999999975


Q ss_pred             C
Q 008780          514 S  514 (554)
Q Consensus       514 ~  514 (554)
                      .
T Consensus       259 ~  259 (374)
T PF13281_consen  259 Y  259 (374)
T ss_pred             c
Confidence            4

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=84.44  E-value=5.7  Score=40.23  Aligned_cols=82  Identities=16%  Similarity=0.074  Sum_probs=57.4

Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 008780          468 EACNKVLDANPAHVKGLYRRGMAYMALGE------------FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKV  535 (554)
Q Consensus       468 ~~~~~al~~~p~~~ka~~~~g~a~~~l~~------------~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~  535 (554)
                      ..+++.+..+|+++.+|..+..-.-.+-.            .+..+..|++||+.+|++ ..+..  ..++...+.-...
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~-~~L~l--~~l~~~~~~~~~~   82 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS-ERLLL--GYLEEGEKVWDSE   82 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC-HHHHH--HHHHHHHHhCCHH
Confidence            45778899999999999998877766644            466778999999999987 33333  3333333322333


Q ss_pred             HHHHHHHhhcccccccc
Q 008780          536 RLENSLKGCLTRSLGKF  552 (554)
Q Consensus       536 ~~~~~y~~~f~~~~~~~  552 (554)
                      ++.+.+++++..+|+++
T Consensus        83 ~l~~~we~~l~~~~~~~   99 (321)
T PF08424_consen   83 KLAKKWEELLFKNPGSP   99 (321)
T ss_pred             HHHHHHHHHHHHCCCCh
Confidence            34577999988887764

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=84.33  E-value=14  Score=38.26  Aligned_cols=101  Identities=15%  Similarity=0.178  Sum_probs=65.5

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHH--HccCHHHHHHHHHHHH
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL--KLGECRKSIEACNKVL  474 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~--kl~~~~~A~~~~~~al  474 (554)
                      .+.....++..+|++++|..|...+...+.    .-+.+.+         ...+.+++.+|.  -.-+|.+|.+.++..+
T Consensus       130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~----rl~~~~~---------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~  196 (379)
T PF09670_consen  130 FGDREWRRAKELFNRYDYGAAARILEELLR----RLPGREE---------YQRYKDLCEGYDAWDRFDHKEALEYLEKLL  196 (379)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCchhh---------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            456777889999999999999999999887    2232211         234555555544  3556777777777555


Q ss_pred             hhC------------------------------CC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          475 DAN------------------------------PA--------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       475 ~~~------------------------------p~--------~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      ...                              ..        ....++.-|.-....|+|+.|+.-+-+++++
T Consensus       197 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl  270 (379)
T PF09670_consen  197 KRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL  270 (379)
T ss_pred             HHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            321                              00        0112333444445678999999999888886

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.92  E-value=2.1  Score=28.25  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=27.9

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN  432 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~  432 (554)
                      ..+-..|...+..++|.+|+.-|++||++...+-
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~   35 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELL   35 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            3456788889999999999999999999655443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.77  E-value=14  Score=28.89  Aligned_cols=66  Identities=18%  Similarity=0.073  Sum_probs=45.6

Q ss_pred             hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc--CCC----ChhHHHHHhhhHHHHHHHHHHHHHH
Q 008780          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV--NPQ----DDEEGKVFVGKRNLLHLNVAACLLK  459 (554)
Q Consensus       394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~--~p~----~~ee~~~~~~~~~~~~~nla~~~~k  459 (554)
                      ..+.|....++|-.+-..|+.++|+.+|+++++.|..-  .|.    ..++++....+....-.++..+-.+
T Consensus         4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~R   75 (79)
T cd02679           4 YYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTR   75 (79)
T ss_pred             HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677788888988888899999999999999987642  121    2245555555555555555555443

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=81.70  E-value=35  Score=31.15  Aligned_cols=65  Identities=11%  Similarity=0.164  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~---~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      ..++..+|..|.+.|+++.|++.|.++......   -...+++.-++....++|..+...+.+|-.+-
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            468899999999999999999999998887532   35678888999999999999999999998873

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=81.50  E-value=2.3  Score=25.19  Aligned_cols=24  Identities=21%  Similarity=0.203  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHH
Q 008780          448 LLHLNVAACLLKLGECRKSIEACN  471 (554)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~  471 (554)
                      .+++++|..+..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            367899999999999999998875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=81.17  E-value=14  Score=32.54  Aligned_cols=60  Identities=15%  Similarity=0.132  Sum_probs=28.5

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780          453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (554)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P  512 (554)
                      +..+.+...+..++.......--+.|+++....--|..|+..|+|.+|+..|+...+-.+
T Consensus        16 ~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~   75 (153)
T TIGR02561        16 VLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG   75 (153)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence            333333344444444444444444455555555555555555555555555544444433

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=81.12  E-value=5.4  Score=39.14  Aligned_cols=62  Identities=13%  Similarity=0.056  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008780          417 AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA  493 (554)
Q Consensus       417 A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~  493 (554)
                      |..+|.+|+.    +.|..           ...|+.+|..+...++.-.|+-+|-+++......+.|.-++...+..
T Consensus         1 A~~~Y~~A~~----l~P~~-----------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIR----LLPSN-----------GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHH----H-TTB-----------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHH----hCCCC-----------CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            7889999999    88877           78999999999999999999999999998766668888888877777

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=80.79  E-value=5.4  Score=25.90  Aligned_cols=32  Identities=9%  Similarity=0.073  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHH--HHHHHhhCCCC
Q 008780          449 LHLNVAACLLKLGECRKSIEA--CNKVLDANPAH  480 (554)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~--~~~al~~~p~~  480 (554)
                      .+..+|.++..+|+|++|+..  +.-+..+++.|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            456789999999999999999  55888887764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=80.71  E-value=23  Score=36.40  Aligned_cols=68  Identities=13%  Similarity=0.046  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDA----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~----~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +.+.+-+-.||+..+.|++|-....++.--    +...+..+|.+|.+..-..+|..|.++|-+|+...|++
T Consensus       209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            345566677888899999999888876521    22346678899999999999999999999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	554
3jym_A	377	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		1e-29
3jym_A	377	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		4e-10
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		3e-29
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		4e-10
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		8e-28
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		9e-28
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		1e-24
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		6e-23
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		2e-19
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		5e-11
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		4e-09
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		3e-10
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		3e-09
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		3e-09
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		3e-09
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		3e-09
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		3e-09
1wao_1	477	Pp5 Structure Length = 477		1e-08
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		2e-08
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		2e-08
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-08
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		3e-08
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		3e-08
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		4e-08
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		4e-08
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		6e-08
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		9e-08
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		3e-07
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		5e-07
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		8e-07
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		9e-07
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		9e-07
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		1e-06
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		1e-06
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		1e-06
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		2e-06
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		2e-06
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		2e-06
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		2e-06
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		2e-06
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		3e-06
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		6e-06
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		6e-06
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		7e-06
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		8e-06
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		1e-05
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		2e-05
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		3e-05
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		3e-05
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		3e-05
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		3e-05
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-05
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		7e-05
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		1e-04
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		1e-04
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		1e-04
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		1e-04
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-04
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-04
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		2e-04
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		2e-04
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		4e-04
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		5e-04
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		8e-04

>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377

Iteration: 1
 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 166/344 (48%), Gaps = 25/344 (7%)
Query: 50  QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
           +V  H T   LDG   +S+R     +    +  LG+ +++ G  +GI TM KGE ++F +
Sbjct: 48  EVEVHYTGTLLDGKKFDSSRD----RDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTI 103
Query: 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
            P++ YGE      +P T P +  L F++E++ +   + IA D G+ KK++ EG  WE P
Sbjct: 104 PPELAYGES----GSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENP 159
Query: 170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
           + P EV     A+  DG  ++S  EG    FT     +   L   + TM + EK ++ V 
Sbjct: 160 KDPDEVFVKYEARLEDG-TVVSKSEG--VEFTVKDGHLCPALAKAVKTMKKGEKVLLAVK 216
Query: 230 SQYLTPSPLMPVVEGCXXXXXXXXXXXXIQ------VRDMLGDGRLIKRRIRDGKGEFPM 283
            QY       P                 ++      V ++  D +++K+ +++ +G    
Sbjct: 217 PQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEG---Y 273
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
           + P   +++ V   G L  ++  VF     D   +P EF + E  V EG +  V  M  G
Sbjct: 274 ERPNEGAVVTVKITGKL--QDGTVFLKKGHDEQ-EPFEFKTDEEAVIEGLDRAVLNMKKG 330
Query: 344 EIALVTCPPDYAY--DKFLRPANVPEGAHIQWEIELLGFEKPKD 385
           E+ALVT PP+YAY   +  + A VP  + + +E+EL+ F K K+
Sbjct: 331 EVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKDKE 374

>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
           D P     + VHY G LL+ +K   +D+  D D    +F  G+G V +G++  ++ M  G
Sbjct: 41  DTPEVGDEVEVHYTGTLLDGKK---FDSSRDRD-DTFKFKLGQGQVIKGWDQGIKTMKKG 96
Query: 344 EIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWT--GLSFDGIMDEAEK 400
           E AL T PP+ AY +   P  +P  A +Q+++ELL +   +D    G  F  I+ E +K
Sbjct: 97  ENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDK 155

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 164/341 (48%), Gaps = 25/341 (7%)
Query: 50  QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
           +V  H T   LDG   +S+R     +    +  LG+ +++ G  +GI TM KGE ++F +
Sbjct: 32  EVEVHYTGTLLDGKKFDSSRD----RDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTI 87
Query: 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
            P++ YGE      +P T P +  L F++E++ +   + IA D G+ KK++ EG  WE P
Sbjct: 88  PPELAYGES----GSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENP 143
Query: 170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
           + P EV     A+  DG  ++S  EG    FT     +   L   + TM + EK ++ V 
Sbjct: 144 KDPDEVFVKYEARLEDG-TVVSKSEG--VEFTVKDGHLCPALAKAVKTMKKGEKVLLAVK 200
Query: 230 SQYLTPSPLMPVVEGCXXXXXXXXXXXXIQ------VRDMLGDGRLIKRRIRDGKGEFPM 283
            QY       P                 ++      V ++  D +++K+ +++ +G    
Sbjct: 201 PQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEG---Y 257
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
           + P   +++ V   G L  ++  VF     D   +P EF + E  V EG +  V  M  G
Sbjct: 258 ERPNEGAVVTVKITGKL--QDGTVFLKKGHDEQ-EPFEFKTDEEAVIEGLDRAVLNMKKG 314
Query: 344 EIALVTCPPDYAY--DKFLRPANVPEGAHIQWEIELLGFEK 382
           E+ALVT PP+YAY   +  + A VP  + + +E+EL+ F K
Sbjct: 315 EVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK 355

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
           D P     + VHY G LL+ +K   +D+  D D    +F  G+G V +G++  ++ M  G
Sbjct: 25  DTPEVGDEVEVHYTGTLLDGKK---FDSSRDRD-DTFKFKLGQGQVIKGWDQGIKTMKKG 80
Query: 344 EIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWT--GLSFDGIMDEAEK 400
           E AL T PP+ AY +   P  +P  A +Q+++ELL +   +D    G  F  I+ E +K
Sbjct: 81  ENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDK 139

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  121 bits (304), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 169/369 (45%), Gaps = 26/369 (7%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP     V    + K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 89
Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPS----PLMPVVEGCXXXXXXXXXXXXIQVRDMLGD 266
            ++G+ TM + E   +    +Y   +    P +P                  +  D+L D
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIP----SNATLFFEVELLDFKGEDLLED 145
Query: 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 326
           G +I+R  R G+G      P   + + +H +G       +VF       D + + F+ GE
Sbjct: 146 GGIIRRTKRRGEG---YSNPNEGARVQIHLEGRCGG---RVF-------DCRDVAFTVGE 192
Query: 327 GL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
           G    +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 252
Query: 383 PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF 442
            K+   +     +++A  ++  G   FK GK+  A  +Y K++          ++E K  
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKAS 312
Query: 443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502
                   LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ 
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 503 DFEMMMKVD 511
           DFE +++V+
Sbjct: 373 DFEKVLEVN 381

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  121 bits (304), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 166/369 (44%), Gaps = 26/369 (7%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V      K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 89
Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPS----PLMPVVEGCXXXXXXXXXXXXIQVRDMLGD 266
            ++G+ TM R E   +    +Y   S    P +P                  +  D+  D
Sbjct: 90  WDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIP----SNATLFFEIELLDFKGEDLFED 145
Query: 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 326
           G +I+R  R G+G      P   + + +H +G          +D R       + F+ GE
Sbjct: 146 GGIIRRTKRKGEG---YSNPNEGATVEIHLEGRCGGR----MFDCR------DVAFTVGE 192
Query: 327 GL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
           G    +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 252
Query: 383 PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF 442
            K+   +     +++A  ++  G   FK GK+  A  +Y K++          ++E K  
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKAS 312
Query: 443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502
                   LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ 
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 503 DFEMMMKVD 511
           DFE +++V+
Sbjct: 373 DFEKVLEVN 381

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 134/257 (52%), Gaps = 27/257 (10%)
Query: 263 MLGDGRLIKRRIRDGKGEF-PMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           M  DG +I+R    G+G   P +  + +  L  +YK  L               D + L 
Sbjct: 21  MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------------DQRELR 66
Query: 322 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQW 373
           F  GEG    +P G E  ++ M  GE ++V   P YA+     +KF     +P  A +++
Sbjct: 67  FEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF----QIPPNAELKY 122
Query: 374 EIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP 433
           E+ L  FEK K+   ++ +  ++++  ++  G   FKEGK++ A  +Y+K++    + + 
Sbjct: 123 ELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS 182
Query: 434 QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493
             +EE +     R   HLN+A C LKL     +IE+CNK L+ +  + KGL+RRG A++A
Sbjct: 183 FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLA 242
Query: 494 LGEFEEAQRDFEMMMKV 510
           + +FE A+ DF+ ++++
Sbjct: 243 VNDFELARADFQKVLQL 259

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score =  105 bits (262), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 131/257 (50%), Gaps = 27/257 (10%)
Query: 263 MLGDGRLIKRRIRDGKGEF-PMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           M  DG +I+R    G+G   P +  + +  L  +YK  L               D + L 
Sbjct: 21  MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------------DQRELR 66
Query: 322 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQW 373
           F  GEG    +P G E  ++    GE ++V   P YA+     +KF     +P  A +++
Sbjct: 67  FEIGEGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKF----QIPPNAELKY 122
Query: 374 EIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP 433
           E+ L  FEK K+    + +  ++++  ++  G   FKEGK++ A  +Y+K++    + + 
Sbjct: 123 ELHLKSFEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS 182
Query: 434 QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493
             +EE +     R   HLN+A C LKL     +IE+CNK L+ +  + KGL RRG A++A
Sbjct: 183 FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA 242
Query: 494 LGEFEEAQRDFEMMMKV 510
           + +FE A+ DF+ ++++
Sbjct: 243 VNDFELARADFQKVLQL 259

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/259 (33%), Positives = 129/259 (49%), Gaps = 29/259 (11%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D ++ K+ I++G G  P       S   +HY+    N + K F DT   ++ QP+E   G
Sbjct: 48  DEKVSKQIIKEGHGSKPSKY----STCFLHYRAWTKNSQHK-FEDTW--HEQQPIELVLG 100
Query: 326 -EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK---FLRPANVPEGAHIQWEIELLGFE 381
            E     G  + V  M  GE ALV    + AY K   F  P NVP  A + +E+E++GF+
Sbjct: 101 KEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFP-NVPPMADLLYEVEVIGFD 159
Query: 382 KPKDWTGLSFDGIMDE----AEKIRVTGNRLFKEGKFELAKAKYEKVLR----DFN---H 430
           + K+    S D  ++E    A++ ++ GN LFKE K E A  +YE  +     DF    +
Sbjct: 160 ETKEGKARS-DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLY 218
Query: 431 VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490
              QD     + +  +N  HLN+AACL+KL    ++I  CN VL     + K L+RRG A
Sbjct: 219 GKYQD-----MALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKA 273
Query: 491 YMALGEFEEAQRDFEMMMK 509
              LG+ + A+ DF    K
Sbjct: 274 KAELGQMDSARDDFRKAQK 292

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 78  PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
           P    LGK +++     G+ TM KGE+     KP+  YG       +    P +  L FE
Sbjct: 80  PFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYG----SAGSLPKIPSNATLFFE 135
Query: 138 IEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEP 197
           IE++DF K + + +D G++++   +G+G+  P     V+  +  + G G++     +   
Sbjct: 136 IELLDF-KGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCG-GRMF----DCRD 189
Query: 198 YFFTFGKSE---VPKGLEMGIGTMTREEKAVIYVTSQY 232
             FT G+ E   +P G++  +  M REE+ ++Y+  +Y
Sbjct: 190 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRY 227

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 101/245 (41%), Gaps = 27/245 (11%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGK-LILSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V      K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPS----PLMPVVEGCXXXXXXXXXXXXIQVRDMLGD 266
            ++G+ TM + E   +    +Y   S    P +P                  +  D+  D
Sbjct: 94  WDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIP----SNATLFFEIELLDFKGEDLFED 149
Query: 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 326
           G +I+R  R G+G      P   + + +H +G          +D R       + F+ GE
Sbjct: 150 GGIIRRTKRKGEG---YSNPNEGATVEIHLEGRCGGR----MFDCR------DVAFTVGE 196
Query: 327 GL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
           G    +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK
Sbjct: 197 GEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 256
Query: 383 PKD-W 386
            K+ W
Sbjct: 257 AKESW 261

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR--DFNHVNPQDDEEGKVFVGKRNLL 449
           D I+  +E ++  GN  FK   +E+A  KY KVLR  + +    +D +  K+     + +
Sbjct: 217 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCV 276
Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
            LN+ AC LK+ + + ++++C + L+ +P++ K LYRR   +  L E+++A  D +   +
Sbjct: 277 -LNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335
Query: 510 V 510
           +
Sbjct: 336 I 336

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R G GE   + P+    + VHYKG L N +K   +D+  D + +P  FS G
Sbjct: 34  DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 86
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+
Sbjct: 87  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R G GE   + P+    + VHYKG L N +K   +D+  D + +P  FS G
Sbjct: 34  DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 86
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+
Sbjct: 87  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 15/119 (12%)
Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHL 451
           DG +  AE+++   N  FK   +E A   Y + +     +NP +     ++ G R+L +L
Sbjct: 7   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAI----ELNPSN----AIYYGNRSLAYL 58
Query: 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
                   LG+  ++IE   K       ++KG YRR  + MALG+F  A RD+E ++KV
Sbjct: 59  RTECYGYALGDATRAIELDKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV 110

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R G GE   + P+    + VHYKG L N +K   +D+  D + +P  FS G
Sbjct: 18  DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 70
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+
Sbjct: 71  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 126

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R G GE   + P+    + VHYKG L N +K   +D+  D + +P  FS G
Sbjct: 18  DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 70
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+
Sbjct: 71  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 126

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 452
           G +  AE+++   N  FK   +E A   Y + +     +NP +     ++ G R+L +L 
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN----AIYYGNRSLAYLR 52
Query: 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512
                  LG+  ++IE   K       ++KG YRR  + MALG+F  A RD+E ++KV K
Sbjct: 53  TECYGYALGDATRAIELDKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV-K 104
Query: 513 SSEPDA 518
             + DA
Sbjct: 105 PHDKDA 110

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R+G G    + P+    + VHY G LL+  K   +D+ +D   +   F  G
Sbjct: 30  DEGVLKVIKREGTG---TEMPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 82
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ +  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+
Sbjct: 83  KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 138

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R+G G    + P+    + VHY G LL+  K   +D+ +D   +   F  G
Sbjct: 34  DEGVLKVIKREGTG---TEMPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 86
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ +  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+
Sbjct: 87  KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 142

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 457
           A++ +  GN  FK+G        Y   +R +N    +D E          +L+ N AACL
Sbjct: 13  AQEEKNKGNEYFKKGD-------YPTAMRHYNEAVKRDPENA--------ILYSNRAACL 57
Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
            KL E +++++ C+  +  +   +KG  R+    +A+ E+ +AQR +E  ++VD S+E
Sbjct: 58  TKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R+G G    + P+    + VHY G LL+  K   +D+ +D   +   F  G
Sbjct: 29  DEGVLKVIKREGTG---TETPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 81
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ V  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+
Sbjct: 82  KGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 137

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 96/243 (39%), Gaps = 24/243 (9%)
Query: 152 DFGVVKKVINEGQGWETP----RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
           D GV+K +  EG G E P    R       W+   T   K   S    + + F  GK EV
Sbjct: 50  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGT---KFDSSLDRKDKFSFDLGKGEV 106
Query: 208 PKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLG-- 265
            K  ++ I TM   E   I    +Y   S   P                  +  D+    
Sbjct: 107 IKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEE 166
Query: 266 DGRLIKRRIRDGKGEF-PMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
           DG +I+R    G+G   P +  + +  L  +YK  L ++ +  F            E   
Sbjct: 167 DGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRF------------EIGE 214
Query: 325 GEGL-VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
           GE L +P G E  ++ M  GE ++V   P YA+    +    +P  A +++E+ L  FEK
Sbjct: 215 GENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEK 274
Query: 383 PKD 385
            K+
Sbjct: 275 AKE 277

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           DG ++K   ++G+G   +  P   + + VHY G L N  K   +D+  D  G    F+ G
Sbjct: 13  DGGVLKLIKKEGQG---VVKPTTGTTVKVHYVGTLENGTK---FDSSRDR-GDQFSFNLG 65
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 378
            G V +G+++ V  M  GE+A  T   DY Y     P  +P GA + +E+EL 
Sbjct: 66  RGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELF 118

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML N +K   +D+  D + +P +F  G+  V +GFE     M  G+ 
Sbjct: 16  PKKGQTCVVHYTGMLQNGKK---FDSSRDRN-KPFKFRIGKQEVIKGFEEGAAQMSLGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +TC PD AY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE 107

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P    +  VHY G L   + KVF  +R    G+P  F+ G G V  G++  V  M  G+ 
Sbjct: 17  PKAGQVAVVHYTGTL--ADGKVFDSSRTR--GKPFRFTVGRGEVIRGWDEGVAQMSVGQR 72
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A + C PDYAY     P  +P  A + +++ELL  E
Sbjct: 73  AKLVCSPDYAYGSRGHPGVIPPNATLTFDVELLRVE 108

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  GFE  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGFEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL---LHLNVAACL 457
           I+  GN  FK+ +   A  KY++ L  F H    DD+   +   K+N+    +LN+A C 
Sbjct: 41  IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--ILLDKKKNIEISCNLNLATCY 98
Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDF 504
            K  +  K+I+  +KVL  +  +VK LY+ G+A M  G  EEA+ + 
Sbjct: 99  NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL 145

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 18/125 (14%)
Query: 393 GIMD---EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLL 449
           G MD    AE  +  GN  +K+G ++ A   Y+K L     ++P +              
Sbjct: 1   GAMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALE----LDPNNASA----------- 45
Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
             N+     K G+ +K+IE   K L+ +P + K  YRRG AY   G++++A  D++  ++
Sbjct: 46  WYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALE 105
Query: 510 VDKSS 514
           +D ++
Sbjct: 106 LDPNN 110

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG---KRNLLHLNVAACL 457
           I   GNRL++EG  + A AKY   +    ++  ++      ++    +   L LN   C 
Sbjct: 11  IHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCK 70
Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
           L + E  + ++ C+ +L+    +VK  ++RG A+ A+   +EAQ DF  ++++D +  P
Sbjct: 71  LVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAP 129

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFVLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPNATLIFDVELLKLE 107

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL 458
           E++R  GN LFK G +  A A Y + L       PQD          + +LH N AAC L
Sbjct: 29  EQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQD----------QAVLHRNRAACHL 76
Query: 459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           KL +  K+    +K ++ +   VK LYRR  A   LG  ++A  D +  + ++  ++
Sbjct: 77  KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG---KRNLLHLNVAACL 457
           I   GNRL++EG  + A AKY   +    ++  ++      ++    +   L LN   C 
Sbjct: 17  IHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCK 76
Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
           L + E  + ++ C+ +L+    +VK  ++RG A+ A+   +EAQ DF  ++++D +  P
Sbjct: 77  LVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAP 135

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 18  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 73
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 74  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 109

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGLEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDKN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGVPGIIPPHATLVFDVELLKLE 107

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKAGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G++  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWQEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           DG ++K  +R G+G    + P   + + VHY G L     KVF  +R  N   P +F  G
Sbjct: 14  DGGVVKTILRKGEG-GEENAPKKGNEVTVHYVGKL-ESSGKVFDSSRERN--VPFKFHLG 69
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
           +G V +G+++CV  M   E   V     Y Y +     ++P  + + +EIEL+ F
Sbjct: 70  QGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+   V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWAEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  + KKV  D+  D + +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML-EDGKKV--DSSRDRN-KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML + +K    D+  D + +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGMLEDGKK---MDSSRDRN-KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 157 KKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGI 215
           KKV+  G G   P+A  +V      +  DGK   S R  G+P+ FT G  EV KG + G+
Sbjct: 28  KKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGV 87
Query: 216 GTMTREEKAVIYVTSQ 231
            TMT  EKA+  +  Q
Sbjct: 88  ATMTLGEKALFTIPYQ 103

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 268 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG 327
           +L K+ +  G G   +  P     + VHY G     + K F  +R  + G+P +F+ G G
Sbjct: 25  QLEKKVLTPGDG---VTKPQAGKKVTVHYDGRF--PDGKQFDSSR--SRGKPFQFTLGAG 77
Query: 328 LVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 378
            V +G++  V  M  GE AL T P   AY +   P  +P  A + +E+ELL
Sbjct: 78  EVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELL 128

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           +G +   RI  G G      P    L+ +HY G L N +K   +D+ VD  G P + + G
Sbjct: 5   EGNVKIDRISPGDGA---TFPKTGDLVTIHYTGTLENGQK---FDSSVDR-GSPFQCNIG 57
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 378
            G V +G+++ +  +  GE A +T P  YAY     P  +P  + + +++ELL
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD--EEGKVFVGKRNL- 448
           D  +   E +R  GN LF +  ++ A   Y   L   + +  ++   E   V + ++N+ 
Sbjct: 5   DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64
Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
           L+ N++ C L +G+  ++ E  ++VL     + K L+RR  A +A  + +EA+ D ++++
Sbjct: 65  LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124
Query: 509 K 509
           +
Sbjct: 125 R 125

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 21/140 (15%)
Query: 368 GAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427
           G+H+  E ++   +      GLS       A +++  GN  F    F  A   Y+  +  
Sbjct: 1   GSHMNGEPDIAQLK------GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE- 53
Query: 428 FNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 487
              ++P +            + + N++AC +  G+  K IE   K L+  P H K L RR
Sbjct: 54  ---LDPNEP-----------VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRR 99
Query: 488 GMAYMALGEFEEAQRDFEMM 507
             A  +LG F +A  D  ++
Sbjct: 100 ASANESLGNFTDAMFDLSVL 119

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 388 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRN 447
           GLS       A +++  GN  F    F  A   Y+  +     ++P +            
Sbjct: 11  GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE----LDPNEP----------- 55
Query: 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 507
           + + N++AC +  G+  K IE   K L+  P H K L RR  A  +LG F +A  D  ++
Sbjct: 56  VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 115

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
           + VHY G L + +K  F  ++  ND  P EF  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK--FDSSKDRND--PFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D A  ++  GN  F++G +  A   Y + ++     NP+D +           L+ N AA
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKDAK-----------LYSNRAA 58
Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           C  KL E + +++ C + +   P  +KG  R+  A  A+ ++ +A   ++  + +D S +
Sbjct: 59  CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118
Query: 516 PDA 518
             A
Sbjct: 119 EAA 121

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           ++  DG +IK  ++ G  E   + P   + + VHY G L  E     +D+  D +  P +
Sbjct: 11  ELTADGGVIKTILKKGD-EGEENIPKKGNEVTVHYVGKL--ESTGKVFDSSFDRN-VPFK 66
Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
           F   +G V +G+++CV  M   E  LV     Y Y       ++P  + + +EIELL F
Sbjct: 67  FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           ++  DG +IK  ++ G  E   + P   + + VHY G L  E     +D+  D +  P +
Sbjct: 11  ELTADGGVIKTILKKGD-EGEENIPKKGNEVTVHYVGKL--ESTGKVFDSSFDRN-VPFK 66
Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
           F   +G V +G+++CV  M   E  LV     Y Y       ++P  + + +EIELL F
Sbjct: 67  FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
           + VHY G L + +K  F  ++  ND  P  F  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK--FDSSKDRND--PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAAGVIPPNATLVFEVELL 207

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
           + VHY G L + +K  F  ++  ND  P  F  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK--FGSSKDRND--PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
           + VHY G L + +K  F  ++  ND  P  F  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK--FDSSKDRND--PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
           + VHY G L + +K  F  ++  ND  P  F  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK--FDSSKDRND--PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 291 LLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTC 350
           +L +HY G L   E    +D+ +  + QP  FS G G V +G++  +  M  GE   +  
Sbjct: 11  VLHMHYTGKL---EDGTEFDSSLPQN-QPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVI 66
Query: 351 PPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382
           P +  Y +   P  +P GA + +E+ELL  E+
Sbjct: 67  PSELGYGERGAPPKIPGGATLVFEVELLKIER 98

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 12/124 (9%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D ++ K+ I++G G  P       S   +HY+    N + K F DT   ++ QP+E   G
Sbjct: 48  DEKVSKQIIKEGHGSKPSKY----STCFLHYRAWTKNSQHK-FEDTW--HEQQPIELVLG 100
Query: 326 -EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK---FLRPANVPEGAHIQWEIELLGFE 381
            E     G  + V  M  GE ALV    + AY K   F  P NVP  A + +E+E++GF+
Sbjct: 101 KEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFP-NVPPMADLLYEVEVIGFD 159
Query: 382 KPKD 385
           + K+
Sbjct: 160 ETKE 163

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 54  HC--TVRTLDGVIVES---TRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFK 108
           HC  T    DG + ++   T ++      P+   +G  K++ G  E + TM KGE +  +
Sbjct: 24  HCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLE 83
Query: 109 MKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           ++P+  YG+   P A     P + +L FE+E++D 
Sbjct: 84  IEPEWAYGKKGQPDAK---IPPNAKLTFEVELVDI 115

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 54  HC--TVRTLDGVIVES---TRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFK 108
           HC  T    DG + ++   T S+      P+   +G  K++ G  E + TM KGE +  +
Sbjct: 27  HCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLE 86
Query: 109 MKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           ++P+  YG+   P A     P + +L FE+E++D 
Sbjct: 87  IEPEWAYGKKGQPDAK---IPPNTKLIFEVELVDI 118

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 259 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQ 318
           ++ D+ GD  ++K  IR+G G    D    D+ + V Y G L + ++   +D+       
Sbjct: 18  RMLDISGDRGVLKDVIREGAG----DLVAPDASVLVKYSGYLEHMDRP--FDSNYFRK-T 70
Query: 319 PLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 378
           P     GE +   G E+ +  M  GE+A     P+YAY     P  +P    + +EIELL
Sbjct: 71  PRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELL 130
Query: 379 GF 380
            F
Sbjct: 131 DF 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	554
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	3e-90
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	3e-26
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	2e-86
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	2e-17
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	5e-13
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-69
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-12
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-11
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	5e-66
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	4e-12
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	4e-11
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	3e-42
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	5e-40
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	4e-32
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	6e-32
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	6e-28
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	2e-15
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-29
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-25
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	6e-25
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-24
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-24
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	6e-24
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	7e-24
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	5e-16
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	1e-11
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	3e-23
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-15
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-21
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-21
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	4e-21
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	1e-14
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	3e-10
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	4e-21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-06
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	4e-20
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	9e-16
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	4e-09
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	8e-20
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-18
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-17
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	2e-17
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	2e-14
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	2e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-04
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	1e-16
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	4e-14
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	2e-07
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	2e-16
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	6e-15
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	5e-10
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	2e-16
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	4e-15
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	2e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-16
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-04
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	8e-16
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	1e-11
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	3e-07
2ppn_A	107	FK506-binding protein 1A; high resolution protein	1e-15
2ppn_A	107	FK506-binding protein 1A; high resolution protein	7e-14
2ppn_A	107	FK506-binding protein 1A; high resolution protein	3e-08
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-15
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	2e-15
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	4e-14
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	5e-09
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	2e-15
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	4e-14
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	4e-09
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	3e-15
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	4e-09
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	3e-04
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-14
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-13
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	3e-08
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	1e-13
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	3e-13
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	3e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-04
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	5e-13
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	9e-07
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	2e-12
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-06
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	3e-11
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	9e-08
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	4e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-07
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	3e-11
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	8e-08
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	3e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-10
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-10
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-10
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-07
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	1e-09
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	4e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-07
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	2e-09
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	1e-06
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	8e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	8e-07
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	3e-09
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	3e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-06
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	3e-09
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	5e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	9e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	9e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	5e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	5e-08
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	8e-08
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	2e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	7e-07
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-05
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	2e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	6e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	8e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-04
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	1e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-05
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	3e-05
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	3e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-04
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	2e-04
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	2e-04
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	4e-04
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	2e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	3e-04
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-04

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  284 bits (727), Expect = 3e-90
 Identities = 102/413 (24%), Positives = 181/413 (43%), Gaps = 21/413 (5%)

Query: 124 APSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKT 183
                 K+ E      + +  +      D GV+K V   G G ETP    +V      K 
Sbjct: 2   TTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 61

Query: 184 GDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT-PSPLMPV 241
            +GK   S  +  EP+ F+ GK +V K  ++G+ TM R E   +    +Y    +  +P 
Sbjct: 62  SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPK 121

Query: 242 VEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLL 301
           +     + FE+EL+           G + + + +      P +     + + +H +G   
Sbjct: 122 IPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEG----ATVEIHLEGRC- 176

Query: 302 NEEKKVFYDTRVDNDGQPLEFSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAY-D 357
               ++F       D + + F+ GEG    +P G +  +  M   E  ++   P Y + +
Sbjct: 177 --GGRMF-------DCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGE 227

Query: 358 KFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELA 417
                  +   A + +E+ L  FEK K+   +     +++A  ++  G   FK GK+  A
Sbjct: 228 AGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQA 287

Query: 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477
             +Y K++          ++E K          LN+A C LKL E  K++E C+K L  +
Sbjct: 288 VIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347

Query: 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530
            A+ KGLYRRG A + + EFE A+ DFE +++V+  ++  A   +S  +K+ +
Sbjct: 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK-AARLQISMCQKKAK 399

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  110 bits (277), Expect = 3e-26
 Identities = 62/266 (23%), Positives = 117/266 (43%), Gaps = 21/266 (7%)

Query: 2   AVEDEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLD 61
             ++ + +P    A   +D    K     ++K V R G G+ TP  GD+V  H   +  +
Sbjct: 6   GAKNNEESPTATVAEQGEDITSKK--DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSN 63

Query: 62  GVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCP 121
           G   +S+      +  P    LGK +++     G+ TM +GE+     KP+  YG     
Sbjct: 64  GKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGS- 118

Query: 122 VAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISA 181
                  P +  L FEIE++DF K + + +D G++++   +G+G+  P     V+  +  
Sbjct: 119 ---LPKIPSNATLFFEIELLDF-KGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEG 174

Query: 182 KTGDGKLILSHREGEPYFFTFGK---SEVPKGLEMGIGTMTREEKAVIYVTSQYL--TPS 236
           + G         +     FT G+    ++P G++  +  M REE+ ++Y+  +Y      
Sbjct: 175 RCGGRMF-----DCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAG 229

Query: 237 PLMPVVEGCEEVHFEVELVHLIQVRD 262
                +E   E+ +EV L    + ++
Sbjct: 230 KPKFGIEPNAELIYEVTLKSFEKAKE 255

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  270 bits (693), Expect = 2e-86
 Identities = 107/367 (29%), Positives = 176/367 (47%), Gaps = 25/367 (6%)

Query: 24  MKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVL 83
            +I    L K +++ G G  TP  GD+V  H T   LDG   +S+R     +    +  L
Sbjct: 6   NEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRD----RDDTFKFKL 61

Query: 84  GKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           G+ +++ G  +GI TM KGE ++F + P++ YGE   P     T P +  L F++E++ +
Sbjct: 62  GQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPP----TIPANATLQFDVELLSW 117

Query: 144 AKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFG 203
              + IA D G+ KK++ EG  WE P+ P EV     A+  DG ++          FT  
Sbjct: 118 TSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSE---GVEFTVK 174

Query: 204 KSEVPKGLEMGIGTMTREEKAVIYVTSQY------LTPSPLMPVVEGCEEVHFEVELVHL 257
              +   L   + TM + EK ++ V  QY         +     V     +  ++ELV  
Sbjct: 175 DGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSW 234

Query: 258 IQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDG 317
             V ++  D +++K+ +++ +     + P   +++ V   G L +    VF     D + 
Sbjct: 235 KTVTEIGDDKKILKKVLKEXE---GYERPNEGAVVTVKITGKLQD--GTVFLKKGHD-EQ 288

Query: 318 QPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK--FLRPANVPEGAHIQWEI 375
           +P EF + E  V EG +  V  M  GE+ALVT PP+YAY      + A VP  + + +E+
Sbjct: 289 EPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEV 348

Query: 376 ELLGFEK 382
           EL+ F K
Sbjct: 349 ELVSFVK 355

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 83.3 bits (206), Expect = 2e-17
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 12/164 (7%)

Query: 264 LGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFS 323
           +G   L K+ +++G+G    D P     + VHY G LL+   K F  +R  +     +F 
Sbjct: 8   IGKQGLKKKLLKEGEGW---DTPEVGDEVEVHYTGTLLD--GKKFDSSR--DRDDTFKFK 60

Query: 324 SGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKP 383
            G+G V +G++  ++ M  GE AL T PP+ AY +   P  +P  A +Q+++ELL +   
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 120

Query: 384 KDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427
           +D             +KI   G++       +    KYE  L D
Sbjct: 121 RDI-----AKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLED 159

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 69.5 bits (170), Expect = 5e-13
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 7/129 (5%)

Query: 18  EDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDG-VIVESTRSEYGGKG 76
                        ++K V++   G   P++G  V    T +  DG V ++    E     
Sbjct: 233 SWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDE----Q 288

Query: 77  IPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHF 136
            P      +  ++ GL   +  M KGEV++  + P+  YG  +      +  P +  + +
Sbjct: 289 EPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESK--QDAIVPPNSTVIY 346

Query: 137 EIEMIDFAK 145
           E+E++ F K
Sbjct: 347 EVELVSFVK 355

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  225 bits (576), Expect = 2e-69
 Identities = 77/277 (27%), Positives = 143/277 (51%), Gaps = 18/277 (6%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
            M  DG +I+R    G+G      P   +++ V  +G   ++   +F       D + L 
Sbjct: 20  HMEEDGGIIRRIQTRGEGY---AKPNEGAIVEVALEGYYKDK---LF-------DQRELR 66

Query: 322 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKF-LRPANVPEGAHIQWEIEL 377
           F  GEG    +P G E  ++ M  GE ++V   P YA+         +P  A +++E+ L
Sbjct: 67  FEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHL 126

Query: 378 LGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE 437
             FEK K+   ++ +  ++++  ++  G   FKEGK++ A  +Y+K++    + +   +E
Sbjct: 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE 186

Query: 438 EGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 497
           E +     R   HLN+A C LKL     +IE+CNK L+ +  + KGL RRG A++A+ +F
Sbjct: 187 EAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDF 246

Query: 498 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLK 534
           E A+ DF+ ++++  ++   A   L+  +++ + +L 
Sbjct: 247 ELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLA 282

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 16/122 (13%)

Query: 29  GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLG---K 85
           G +++ +   G G + P++G  V         D +  +            +R  +G    
Sbjct: 25  GGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQR----------ELRFEIGEGEN 74

Query: 86  SKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK 145
             +  GL   I  M KGE S+  +KP   +G            P + EL +E+ +  F K
Sbjct: 75  LDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE---KFQIPPNAELKYELHLKSFEK 131

Query: 146 AK 147
           AK
Sbjct: 132 AK 133

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 16/129 (12%)

Query: 139 EMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPY 198
                     + +D G+++++   G+G+  P     V+  +     D        +    
Sbjct: 17  RGSH------MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF-----DQREL 65

Query: 199 FFTFG---KSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP--VVEGCEEVHFEVE 253
            F  G     ++P GLE  I  M + E +++Y+   Y   S       +    E+ +E+ 
Sbjct: 66  RFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELH 125

Query: 254 LVHLIQVRD 262
           L    + ++
Sbjct: 126 LKSFEKAKE 134

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  217 bits (553), Expect = 5e-66
 Identities = 87/326 (26%), Positives = 144/326 (44%), Gaps = 26/326 (7%)

Query: 217 TMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRD 276
           T T ++++ I      +  S          +V  E E+           D ++ K+ I++
Sbjct: 9   TQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEV----------LDEKVSKQIIKE 58

Query: 277 GKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG-EGLVPEGFEM 335
           G G  P       S   +HY+    N +   F DT   ++ QP+E   G E     G  +
Sbjct: 59  GHGSKPSKY----STCFLHYRAWTKNSQH-KFEDTW--HEQQPIELVLGKEKKELAGLAI 111

Query: 336 CVRLMLPGEIALVTCPPDYAYDKFLRPA--NVPEGAHIQWEIELLGFEKPK---DWTGLS 390
            V  M  GE ALV    + AY K    +  NVP  A + +E+E++GF++ K     + ++
Sbjct: 112 GVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMT 171

Query: 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR--DFNHVNPQDDEEGKVFVGKRNL 448
            +  +  A++ ++ GN LFKE K E A  +YE  +     + +     +   + +  +N 
Sbjct: 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP 231

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
            HLN+AACL+KL    ++I  CN VL     + K L+RRG A   LG+ + A+ DF    
Sbjct: 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291

Query: 509 KVDKSSEPDATAALSKLKKQRQVKLK 534
           K            L  L +Q +   +
Sbjct: 292 KYAPDD-KAIRRELRALAEQEKALYQ 316

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 66.6 bits (162), Expect = 4e-12
 Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 9/156 (5%)

Query: 107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGW 166
            + + Q H  E +      +    +     E  +     ++    D  V K++I EG G 
Sbjct: 5   LEHQTQTHDQESEIVTEGSAVVHSEPS--QEGNVPPKVDSEAEVLDEKVSKQIIKEGHG- 61

Query: 167 ETPRAPYEVKAWISAKTGDGKLIL--SHREGEPYFFTFGKS-EVPKGLEMGIGTMTREEK 223
             P           A T + +     +  E +P     GK  +   GL +G+ +M   E+
Sbjct: 62  SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGER 121

Query: 224 AVIYVTSQYL---TPSPLMPVVEGCEEVHFEVELVH 256
           A+++V  +       +   P V    ++ +EVE++ 
Sbjct: 122 ALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIG 157

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 63.5 bits (154), Expect = 4e-11
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 9/147 (6%)

Query: 9   NPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDG-VIVES 67
            P ++           +++   + K +++ G G   PS       H    T +     E 
Sbjct: 29  EPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFED 87

Query: 68  TRSEYGGKGIPIRHVLGKS-KILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPS 126
           T  E      PI  VLGK  K L GL  G+ +M  GE ++  +  ++ YG++     +  
Sbjct: 88  TWHE----QQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNF--SFP 141

Query: 127 TFPKDEELHFEIEMIDFAKAKIIADDF 153
             P   +L +E+E+I F + K      
Sbjct: 142 NVPPMADLLYEVEVIGFDETKEGKARS 168

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  149 bits (377), Expect = 3e-42
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 3/161 (1%)

Query: 376 ELLGFEKPKDWTG-LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQ 434
           E L F+  K      + +  +  A  I+  GN  FK+ +   A  KY++ L  F H    
Sbjct: 15  ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW 74

Query: 435 DDEEGKVFVGK-RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493
           DD+             +LN+A C  K  +  K+I+  +KVL  +  +VK LY+ G+A M 
Sbjct: 75  DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY 134

Query: 494 LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLK 534
            G  EEA+ +      ++ ++  D   +      + +   K
Sbjct: 135 FGFLEEAKENLYKAASLNPNN-LDIRNSYELCVNKLKEARK 174

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  141 bits (358), Expect = 5e-40
 Identities = 31/148 (20%), Positives = 66/148 (44%), Gaps = 3/148 (2%)

Query: 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP---QDDEEGKVFVGKR 446
           + D  +   E +R  GN LF +  ++ A   Y   L   + +       + E      K 
Sbjct: 3   AEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN 62

Query: 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 506
             L+ N++ C L +G+  ++ E  ++VL     + K L+RR  A +A  + +EA+ D ++
Sbjct: 63  IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKL 122

Query: 507 MMKVDKSSEPDATAALSKLKKQRQVKLK 534
           +++   ++       +  + ++R  K  
Sbjct: 123 LLRNHPAAASVVAREMKIVTERRAEKKA 150

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  126 bits (318), Expect = 4e-32
 Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 2/146 (1%)

Query: 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE-GKVFVGKRNL 448
             D I+  +E ++  GN  FK   +E+A  KY KVLR         ++  G         
Sbjct: 215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALS 274

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
             LN+ AC LK+ + + ++++C + L+ +P++ K LYRR   +  L E+++A  D +   
Sbjct: 275 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 334

Query: 509 KVDKSSEPDATAALSKLKKQRQVKLK 534
           ++         A L K+K++ + +  
Sbjct: 335 EIAPED-KAIQAELLKVKQKIKAQKD 359

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  123 bits (310), Expect = 6e-32
 Identities = 67/267 (25%), Positives = 102/267 (38%), Gaps = 27/267 (10%)

Query: 130 KDEELHFEIEMIDFAKAKI-IADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKL 188
           K  E   +   +      I    D GV+K +  EG G E P     V    +    DG  
Sbjct: 27  KATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTK 86

Query: 189 ILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEG 244
             S  +  + + F  GK EV K  ++ I TM   E   I    +Y      SP  P +  
Sbjct: 87  FDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSP--PKIPP 144

Query: 245 CEEVHFEVELVHLIQVRD--MLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLN 302
              + FEVEL              G + + + R      P +     +++ V  +G   +
Sbjct: 145 NATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNE----GAIVEVALEGYYKD 200

Query: 303 EEKKVFYDTRVDNDGQPLEFSSGEGLV---PEGFEMCVRLMLPGEIALVTCPPDYAY-DK 358
              K+F       D + L F  GEG     P G E  ++ M  GE ++V   P YA+   
Sbjct: 201 ---KLF-------DQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSV 250

Query: 359 FLRPANVPEGAHIQWEIELLGFEKPKD 385
                 +P  A +++E+ L  FEK K+
Sbjct: 251 GKEKFQIPPNAELKYELHLKSFEKAKE 277

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  112 bits (281), Expect = 6e-28
 Identities = 59/270 (21%), Positives = 104/270 (38%), Gaps = 22/270 (8%)

Query: 1   MAVEDEDINPQKKKAPSEDDKRRMKIV-PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRT 59
            A E +      + AP   +   +       ++K + R G G   P  GD+V  H T   
Sbjct: 22  TAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWL 81

Query: 60  LDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDD 119
           LDG   +S+      +       LGK +++      I TM  GEV     KP+  YG   
Sbjct: 82  LDGTKFDSSLD----RKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAG 137

Query: 120 CPVAAPSTFPKDEELHFEIEMID-FAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAW 178
               +P   P +  L FE+E+ +   +     +D G+++++   G+G+  P     V+  
Sbjct: 138 ----SPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVA 193

Query: 179 ISAKTGDGKLILSHREGEPYFFTFGKSEV---PKGLEMGIGTMTREEKAVIYVTSQYL-- 233
           +     D        +     F  G+ E    P GLE  I  M + E +++Y+   Y   
Sbjct: 194 LEGYYKDKLF-----DQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFG 248

Query: 234 -TPSPLMPVVEGCEEVHFEVELVHLIQVRD 262
                    +    E+ +E+ L    + ++
Sbjct: 249 SVGKEKF-QIPPNAELKYELHLKSFEKAKE 277

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 75.7 bits (186), Expect = 2e-15
 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            D  ++K   R+G G    + P+    + VHY G LL+     F  +   +      F  
Sbjct: 49  QDEGVLKVIKREGTGT---EMPMIGDRVFVHYTGWLLD--GTKFDSSL--DRKDKFSFDL 101

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPK 384
           G+G V + +++ +  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+   
Sbjct: 102 GKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGED 161

Query: 385 DWTGLSFDGIMDEAEK 400
                    I     +
Sbjct: 162 LTEEEDGGIIRRIQTR 177

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  112 bits (281), Expect = 3e-29
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 454
               E++R  GN LFK G +  A A Y + L     ++    ++          LH N A
Sbjct: 25  ASSVEQLRKEGNELFKCGDYGGALAAYTQALG----LDATPQDQAV--------LHRNRA 72

Query: 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514
           AC LKL +  K+    +K ++ +   VK LYRR  A   LG  ++A  D +  + ++  +
Sbjct: 73  ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132

Query: 515 EPDATAALSKLKK 527
           +     AL  +  
Sbjct: 133 K-VFQEALRNISG 144

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =   99 bits (250), Expect = 2e-25
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 16/134 (11%)

Query: 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 454
           M++  +++  GN+    G  + A   Y + ++    ++P +           ++L+ N +
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHN-----------HVLYSNRS 45

Query: 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514
           A   K G+ +K+ E   K +D  P   KG  R+  A   L  FEEA+R +E  +K + ++
Sbjct: 46  AAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

Query: 515 EPDATAALSKLKKQ 528
                  L  ++ +
Sbjct: 106 P-QLKEGLQNMEAR 118

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 99.3 bits (248), Expect = 6e-25
 Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 19/143 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
             A++++  GNRLF   K+  A A Y + +      NP              + + N A 
Sbjct: 7   PSAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVA-----------VYYTNRAL 51

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           C LK+ +  +++  C + L+ +   VK  +  G   + +  ++EA  + +    + K   
Sbjct: 52  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111

Query: 516 P----DATAALSKLKKQRQVKLK 534
                D  +AL   KK+R   ++
Sbjct: 112 LNFGDDIPSALRIAKKKRWNSIE 134

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 98.1 bits (245), Expect = 1e-24
 Identities = 33/132 (25%), Positives = 68/132 (51%), Gaps = 16/132 (12%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           + A++ +  GN  FK+G +  A   Y + ++     +P++            +L+ N AA
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK----RDPEN-----------AILYSNRAA 55

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           CL KL E +++++ C+  +  +   +KG  R+    +A+ E+ +AQR +E  ++VD S+E
Sbjct: 56  CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

Query: 516 PDATAALSKLKK 527
            +A   +    +
Sbjct: 116 -EAREGVRNCLR 126

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 96.6 bits (241), Expect = 4e-24
 Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 17/134 (12%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
           +AE+ R+ G   F +  +  A   Y ++++      P+D              + N AA 
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPED-----------ARGYSNRAAA 47

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
           L KL    ++I  CNK ++ +P  V+   R+  A +A+ E+  A    +     D   E 
Sbjct: 48  LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA--EV 105

Query: 517 DATAALSKLKKQRQ 530
           +  ++  ++ +   
Sbjct: 106 NNGSSAREIDQLYY 119

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 96.5 bits (241), Expect = 6e-24
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 16/134 (11%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D A  ++  GN  F++G +  A   Y + ++     NP+D             L+ N AA
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIK----RNPKD-----------AKLYSNRAA 58

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           C  KL E + +++ C + +   P  +KG  R+  A  A+ ++ +A   ++  + +D S +
Sbjct: 59  CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118

Query: 516 PDATAALSKLKKQR 529
            +A     +    +
Sbjct: 119 -EAADGYQRCMMAQ 131

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 96.2 bits (240), Expect = 7e-24
 Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 11/130 (8%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           D+LG+G L K+ +  G        P+   ++ VH +  L N        TRV      L 
Sbjct: 12  DILGNGLLRKKTLVPGPP--GSSRPVKGQVVTVHLQTSLEN-------GTRVQE-EPELV 61

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY-DKFLRPANVPEGAHIQWEIELLGF 380
           F+ G+  V +  ++ V LM  GE A+VT    Y Y  +  R   +P  A +  E+ L   
Sbjct: 62  FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTA 121

Query: 381 EKPKDWTGLS 390
               D     
Sbjct: 122 VDRPDLEMSG 131

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 73.9 bits (182), Expect = 5e-16
 Identities = 27/140 (19%), Positives = 43/140 (30%), Gaps = 13/140 (9%)

Query: 15  APSEDDKRRMKIVP-GSLMKAVMRPG-GGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEY 72
           +     +  + I+  G L K  + PG  G S P  G  V  H      +G  V+      
Sbjct: 2   SSGSSGEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP--- 58

Query: 73  GGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDE 132
                 +   LG   ++  L   +P M  GE +M     +  YG            P   
Sbjct: 59  -----ELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSR---SPYIPPHA 110

Query: 133 ELHFEIEMIDFAKAKIIADD 152
            L  E+ +        +   
Sbjct: 111 ALCLEVTLKTAVDRPDLEMS 130

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 14/126 (11%)

Query: 149 IADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
           I  +  + KK +  G      P     V   +     +G  +          FT G  +V
Sbjct: 13  ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE---EPELVFTLGDCDV 69

Query: 208 PKGLEMGIGTMTREEKAVIYVTSQY------LTPSPLMPVVEGCEEVHFEVELVHLIQVR 261
            + L++ +  M   E A++   S+Y             P +     +  EV L   +   
Sbjct: 70  IQALDLSVPLMDVGETAMVTADSKYCYGPQGSRS----PYIPPHAALCLEVTLKTAVDRP 125

Query: 262 DMLGDG 267
           D+   G
Sbjct: 126 DLEMSG 131

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 95.5 bits (238), Expect = 3e-23
 Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 16/136 (11%)

Query: 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 454
           +  AE+++   N  FK   +E A   Y + +     +NP +            + + N +
Sbjct: 10  LKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSNA-----------IYYGNRS 54

Query: 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514
              L+      ++    + ++ +  ++KG YRR  + MALG+F  A RD+E ++KV    
Sbjct: 55  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114

Query: 515 EPDATAALSKLKKQRQ 530
           + DA     +  K  +
Sbjct: 115 K-DAKMKYQECNKIVK 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 91.9 bits (229), Expect = 2e-22
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 16/133 (12%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            EAE+++  GN   K   FE A   Y K +     +NP +                N AA
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKAIE----LNPANAV-----------YFCNRAA 54

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
              KLG    +++ C + +  +PA+ K   R G+A  +L +  EA   ++  +++D  +E
Sbjct: 55  AYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114

Query: 516 PDATAALSKLKKQ 528
               + L   + +
Sbjct: 115 -TYKSNLKIAELK 126

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 20/155 (12%)

Query: 382 KPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV 441
                   +    + +  K+  +   L ++G++  A +KYE V++      P   E    
Sbjct: 218 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK----TEPSVAEY--- 270

Query: 442 FVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ 501
                      +  C  K  +  ++I  C++VL   P +V  L  R  AY+    ++EA 
Sbjct: 271 ----TVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI 326

Query: 502 RDFEMMMKVDKSSEPDATA------ALSKLKKQRQ 530
           +D+E   + +++   D         A   LK+ ++
Sbjct: 327 QDYEAAQEHNEN---DQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 21/156 (13%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
           + EK    G +L   G+   A +++   +      +P +              +   A  
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDNYI-----------AYYRRATV 46

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
            L +G+ + ++    KV+           +RG   +  G+ +EA+ DF+ ++K +    P
Sbjct: 47  FLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN----P 102

Query: 517 DATAALSKLKKQRQVKLKVRLENSLKGCLTRSLGKF 552
                     +  +     RL +  +         +
Sbjct: 103 SEQEEKEAESQLVKADEMQRLRS--QALDAFDGADY 136

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 27/174 (15%)

Query: 382 KPKD---WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE 438
            P +       S     DE +++R      F    +  A    +K+L     V   D E 
Sbjct: 101 NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE----VCVWDAE- 155

Query: 439 GKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE 498
                     L    A C +K GE RK+I            + +  Y+    Y  LG+ E
Sbjct: 156 ----------LRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205

Query: 499 EAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLGKF 552
            +  +    +K+D     D     +  K+ +++   +     L        G++
Sbjct: 206 LSLSEVRECLKLD----QDHKRCFAHYKQVKKLNKLIESAEELI-----RDGRY 250

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 93.8 bits (233), Expect = 1e-21
 Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 15/143 (10%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
             A++++  GNRLF   K+  A A Y + +      NP              + + N A 
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVA-----------VYYTNRAL 46

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           C LK+ +  +++  C + L+ +   VK  +  G   + +  ++EA  + +    + K   
Sbjct: 47  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

Query: 516 PDATAALSKLKKQRQVKLKVRLE 538
            +    +    +  + K    +E
Sbjct: 107 LNFGDDIPSALRIAKKKRWNSIE 129

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 89.4 bits (222), Expect = 4e-21
 Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 16/134 (11%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            E++K++  GN      ++  A   Y + L     + P +            +   N AA
Sbjct: 9   PESDKLKSEGNAAMARKEYSKAIDLYTQALS----IAPAN-----------PIYLSNRAA 53

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
                G+  K+ E        +P + K   R G+A   + +++ A+  +E  ++ + +  
Sbjct: 54  AYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113

Query: 516 PDAT-AALSKLKKQ 528
            DA    L   K++
Sbjct: 114 SDAMKRGLETTKRK 127

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 87.7 bits (218), Expect = 4e-21
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 10/120 (8%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           D+LG+G L K+ +  G        P+   ++ VH +  L N        TRV  +   L 
Sbjct: 8   DILGNGLLRKKTLVPGPP--GSSRPVKGQVVTVHLQTSLEN-------GTRVQ-EEPELV 57

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           F+ G+  V +  ++ V LM  GE A+VT    Y Y    R   +P  A +  E+ L    
Sbjct: 58  FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 69.6 bits (171), Expect = 1e-14
 Identities = 26/116 (22%), Positives = 37/116 (31%), Gaps = 13/116 (11%)

Query: 29  GSLMKAVMRPG-GGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSK 87
           G L K  + PG  G S P  G  V  H      +G  V+            +   LG   
Sbjct: 13  GLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP--------ELVFTLGDCD 64

Query: 88  ILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           ++  L   +P M  GE +M     +  YG            P    L  E+ +   
Sbjct: 65  VIQALDLSVPLMDVGETAMVTADSKYCYGPQ----GRSPYIPPHAALCLEVTLKTA 116

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 9/111 (8%)

Query: 149 IADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
           I  +  + KK +  G      P     V   +     +G  +          FT G  +V
Sbjct: 9   ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE---EPELVFTLGDCDV 65

Query: 208 PKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
            + L++ +  M   E A++   S+Y          P +     +  EV L 
Sbjct: 66  IQALDLSVPLMDVGETAMVTADSKYCYGPQGRS--PYIPPHAALCLEVTLK 114

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 88.1 bits (219), Expect = 4e-21
 Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 24/139 (17%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D A   +  GN  +K+  FE A   Y+K +     ++P +              + N AA
Sbjct: 6   DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE----LDPSNIT-----------FYNNKAA 50

Query: 456 CLLKLGECRKSIEACNKVLDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMM 508
              +  +  + ++ C K ++             K + R G A+    +   A + F   +
Sbjct: 51  VYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110

Query: 509 KVDKSSEPDATAALSKLKK 527
              +   P+    + +L+K
Sbjct: 111 SEFRD--PELVKKVKELEK 127

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 92.8 bits (231), Expect = 3e-20
 Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 12/137 (8%)

Query: 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 452
             + +  K+  +   L ++G++  A +KYE V++      P   E               
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMK----TEPSIAEY-------TVRSKER 300

Query: 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512
           +  C  K  +  ++I  C++VL   P +V  L  R  AY+    ++EA +D+E   + ++
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360

Query: 513 SSEPDATAALSKLKKQR 529
           +        L K ++  
Sbjct: 361 ND-QQIREGLEKAQRLL 376

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 86.3 bits (214), Expect = 3e-18
 Identities = 26/142 (18%), Positives = 57/142 (40%), Gaps = 16/142 (11%)

Query: 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLH 450
           +   M + EK    G +L   G+   A +++   +      +P +              +
Sbjct: 19  YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDNYI-----------AY 63

Query: 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
              A   L +G+ + ++    KV+           +RG   +  G+ +EA+ DF+ ++K 
Sbjct: 64  YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123

Query: 511 DKSSEPDATAALSKLKKQRQVK 532
           + S   +   A S+L K  +++
Sbjct: 124 NPSE-NEEKEAQSQLIKSDEMQ 144

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 78.6 bits (194), Expect = 9e-16
 Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 19/159 (11%)

Query: 383 PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF 442
            ++    S     DE +++R      F  G +  A A  +K+L     V   D E     
Sbjct: 128 NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE----VCVWDAE----- 178

Query: 443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502
                 L    A C +K GE RK+I            + +  Y+    Y  LG+ E +  
Sbjct: 179 ------LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232

Query: 503 DFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSL 541
           +    +K+D     D     +  K+ +++   +     L
Sbjct: 233 EVRECLKLD----QDHKRCFAHYKQVKKLNKLIESAEEL 267

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 30/121 (24%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L  E  +  + A  EK                          HL +   LL  G+  
Sbjct: 10  GVDLGTENLYFQSMADVEK--------------------------HLELGKKLLAAGQLA 43

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
            ++   +  +D +P +    YRR   ++A+G+ + A  D   ++++      D TAA  +
Sbjct: 44  DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK----MDFTAARLQ 99

Query: 525 L 525
            
Sbjct: 100 R 100

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 31/137 (22%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                KEG+   A +  +   +    +   + E               ++    +LG+  
Sbjct: 184 AECFIKEGEPRKAISDLKAASK----LKNDNTE-----------AFYKISTLYYQLGDHE 228

Query: 465 KSIEACNKVLDANPAH------------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512
            S+    + L  +  H            +  L       +  G + +A   +E +MK + 
Sbjct: 229 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE- 287

Query: 513 SSEPDATAALSKLKKQR 529
              P       + K++ 
Sbjct: 288 ---PSIAEYTVRSKERI 301

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 86.4 bits (214), Expect = 4e-20
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 12/127 (9%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           D+LG+G L K+ +  G        P+   ++ VH +  L N        TRV      L 
Sbjct: 38  DILGNGLLRKKTLVPGPP--GSSRPVKGQVVTVHLQTSLEN-------GTRVQE-EPELV 87

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY-DKFLRPANVPEGAHIQWEIELLGF 380
           F+ G+  V +  ++ V LM  GE A+VT    Y Y  +  R   +P  A +  E+ L   
Sbjct: 88  FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTA 147

Query: 381 -EKPKDW 386
            +     
Sbjct: 148 VDLEHHH 154

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 74.0 bits (182), Expect = 9e-16
 Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 12/148 (8%)

Query: 1   MAVEDEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPG-GGDSTPSDGDQVAYHCTVRT 59
           +A E       +       ++    +  G L K  + PG  G S P  G  V  H     
Sbjct: 15  LAREFLAAMEPEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSL 74

Query: 60  LDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDD 119
            +G  V+            +   LG   ++  L   +P M  GE +M     +  YG   
Sbjct: 75  ENGTRVQEEP--------ELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQG 126

Query: 120 CPVAAPSTFPKDEELHFEIEMIDFAKAK 147
              +     P    L  E+ +      +
Sbjct: 127 ---SRSPYIPPHAALCLEVTLKTAVDLE 151

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 54.8 bits (132), Expect = 4e-09
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 149 IADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
           I  +  + KK +  G      P     V   +     +G  +          FT G  +V
Sbjct: 39  ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE---EPELVFTLGDCDV 95

Query: 208 PKGLEMGIGTMTREEKAVIYVTSQY------LTPSPLMPVVEGCEEVHFEVELV 255
            + L++ +  M   E A++   S+Y             P +     +  EV L 
Sbjct: 96  IQALDLSVPLMDVGETAMVTADSKYCYGPQGSRS----PYIPPHAALCLEVTLK 145

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 84.7 bits (210), Expect = 8e-20
 Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 24/141 (17%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
           +A K +  GN  +K+  F+ A   Y+K       ++P +                N AA 
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTN-----------MTYITNQAAV 47

Query: 457 LLKLGECRKSIEACNKVLDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
             + G+  K  E C K ++    +        K   R G +Y    ++++A   +   + 
Sbjct: 48  YFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107

Query: 510 VDKSSEPDATAALSKLKKQRQ 530
             ++  PD      + +K  +
Sbjct: 108 EHRT--PDVLKKCQQAEKILK 126

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 80.8 bits (200), Expect = 1e-18
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 21/126 (16%)

Query: 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 454
           M + EK +  GN LFK+G +  A   Y++++       PQ+            + + N A
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLIT----AQPQN-----------PVGYSNKA 45

Query: 455 ACLLKLGECRKSIEACNKVLDANPAHVKGL------YRRGMAYMALGEFEEAQRDFEMMM 508
             L+KLGE  ++I+ C + L                YR  +A  A+G  +    + + + 
Sbjct: 46  MALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105

Query: 509 KVDKSS 514
           +    S
Sbjct: 106 EGYDRS 111

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 85.1 bits (211), Expect = 1e-17
 Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 19/149 (12%)

Query: 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 454
           +  AE+++   N  FK   +E A   Y + +     +NP +            + + N +
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRS 47

Query: 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514
              L+      ++    + ++ +  ++KG YRR  + MALG+F  A RD+E ++KV    
Sbjct: 48  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK--- 104

Query: 515 EPDATAALSKLKKQRQVKLKVRLENSLKG 543
            P    A  K ++  ++  +   E ++ G
Sbjct: 105 -PHDKDAKMKYQECNKIVKQKAFERAIAG 132

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 7/119 (5%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           D+ GD  ++K  IR+G G+        D+ + V Y G L + ++   +D+       P  
Sbjct: 21  DISGDRGVLKDVIREGAGDLVAP----DASVLVKYSGYLEHMDRP--FDSNYF-RKTPRL 73

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
              GE +   G E+ +  M  GE+A     P+YAY     P  +P    + +EIELL F
Sbjct: 74  MKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDF 132

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 69.6 bits (171), Expect = 2e-14
 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 12/138 (8%)

Query: 9   NPQKKKAPSEDDKRRMKIV--PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLD-GVIV 65
           +    ++  E   +RM  +     ++K V+R G GD   +    V    +          
Sbjct: 4   DDAPGQSLYERLSQRMLDISGDRGVLKDVIREGAGD-LVAPDASVLVKYSGYLEHMDRPF 62

Query: 66  ESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAP 125
           +S       +  P    LG+   L G+  G+ +M +GE++ F  KP   YG   C    P
Sbjct: 63  DSNYF----RKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGC----P 114

Query: 126 STFPKDEELHFEIEMIDF 143
              P +  + FEIE++DF
Sbjct: 115 PLIPPNTTVLFEIELLDF 132

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 8/117 (6%)

Query: 144 AKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGD-GKLILSHRE-GEPYFFT 201
            +   I+ D GV+K VI EG G +       V    S       +   S+     P    
Sbjct: 17  QRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMK 75

Query: 202 FGKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
            G+     G+E+G+ +M R E A       Y       P  P++     V FE+EL+
Sbjct: 76  LGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCP--PLIPPNTTVLFEIELL 130

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 81.1 bits (201), Expect = 2e-17
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 15/116 (12%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           ++AE+ R+ G   F +  +  A   Y ++++      P+D              + N AA
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPEDAR-----------GYSNRAA 181

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
            L KL    ++I  CNK ++ +P  V+   R+  A +A+ E+  A    +     D
Sbjct: 182 ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 18/109 (16%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
           + EK    GN+ +K  +F+ A   Y K       ++                   N AA 
Sbjct: 6   DKEKAE--GNKFYKARQFDEAIEHYNKAWE----LHKDIT------------YLNNRAAA 47

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             + GE   +I   N  ++              ++  +G       D +
Sbjct: 48  EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLK 96

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 62.2 bits (152), Expect = 5e-11
 Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 15/102 (14%)

Query: 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 463
           T + L K    E    K E        VNP+  EE                       + 
Sbjct: 111 TADILTKLRNAEKELKKAEAEAY----VNPEKAEE-----------ARLEGKEYFTKSDW 155

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             +++A  +++   P   +G   R  A   L  F EA  D  
Sbjct: 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.9 bits (146), Expect = 4e-10
 Identities = 9/101 (8%), Positives = 30/101 (29%), Gaps = 16/101 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
               +++G++E A +     +        +   +           +  ++    ++G   
Sbjct: 45  AAAEYEKGEYETAISTLNDAVE----QGREMRAD-----------YKVISKSFARIGNAY 89

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             +    K ++     +   +R       L   E+  +  E
Sbjct: 90  HKLGDLKKTIEYYQKSLT-EHRTADILTKLRNAEKELKKAE 129

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 22/130 (16%), Positives = 36/130 (27%), Gaps = 27/130 (20%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                + G         +K +        +   E           H   A  L KL    
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEY----YQKSLTE-----------H-RTADILTKLRNAE 122

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD-ATA--- 520
           K ++        NP   +     G  Y    ++  A + +  M+K      P+ A     
Sbjct: 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSN 178

Query: 521 ---ALSKLKK 527
              AL+KL  
Sbjct: 179 RAAALAKLMS 188

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 49.9 bits (120), Expect = 7e-07
 Identities = 12/94 (12%), Positives = 25/94 (26%), Gaps = 15/94 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
              L K   F  A A   K +      +P                ++  A   + + E  
Sbjct: 180 AAALAKLMSFPEAIADCNKAIE----KDPNFVR-----------AYIRKATAQIAVKEYA 224

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE 498
            ++E  +     +     G   R +  +     +
Sbjct: 225 SALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 84.0 bits (208), Expect = 3e-17
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 15/129 (11%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  F    F  A   Y+  +     ++P +              + N++AC +  G+  
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIE----LDPNEPV-----------FYSNISACYISTGDLE 76

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           K IE   K L+  P H K L RR  A  +LG F +A  D  ++              L +
Sbjct: 77  KVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 136

Query: 525 LKKQRQVKL 533
              ++ +K+
Sbjct: 137 NLNKQAMKV 145

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 16/101 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   F +     A+   ++ +     ++P  +             ++ +A  L      +
Sbjct: 250 GIFHFLKNNLLDAQVLLQESIN----LHPTPN------------SYIFLALTLADKENSQ 293

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +  +   K +D NP +    Y RG  Y  L +++ A+ DF+
Sbjct: 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 66.7 bits (163), Expect = 9e-12
 Identities = 18/142 (12%), Positives = 49/142 (34%), Gaps = 11/142 (7%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----EGKVFVGKRNL-LHLNVAACLLK 459
              L   G F+ A  +Y+   R    +    ++     G +      L    +     L 
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKR----LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLD 440

Query: 460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT 519
             +   +I+   K  + +P   +         + + + +EA   FE    + + +  +  
Sbjct: 441 EEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR-TMDEKL 499

Query: 520 AALSKLKKQRQVKLKVRLENSL 541
            A +   +  +++ ++R +  +
Sbjct: 500 QATT-FAEAAKIQKRLRADPII 520

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 21/148 (14%), Positives = 47/148 (31%), Gaps = 20/148 (13%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   F    ++ AK  ++K       +NP++              ++ +A  L K G+  
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQS----LNPENVY-----------PYIQLACLLYKQGKFT 361

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           +S    N+     P   +            G+F+ A + +++  +++             
Sbjct: 362 ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE----EVQEKIHVG 417

Query: 525 LKKQRQVKLKVRLENSLKGCLTRSLGKF 552
           +      K  +    S +        KF
Sbjct: 418 IGPLIG-KATILARQSSQDPTQLDEEKF 444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
              L  +   +     ++K +     +NP+               + +       L + +
Sbjct: 283 ALTLADKENSQEFFKFFQKAVD----LNPEYPP-----------TYYHRGQMYFILQDYK 327

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            + E   K    NP +V    +        G+F E++  F 
Sbjct: 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN 368

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 8/94 (8%), Positives = 25/94 (26%), Gaps = 11/94 (11%)

Query: 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471
           G     +    ++      ++P   +          +   N            ++I+   
Sbjct: 1   GSHMNGEPDIAQLKG----LSPSQRQA-------YAVQLKNRGNHFFTAKNFNEAIKYYQ 49

Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             ++ +P            Y++ G+ E+      
Sbjct: 50  YAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 83

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 17/156 (10%), Positives = 38/156 (24%), Gaps = 27/156 (17%)

Query: 378 LGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE 437
                P + +  SF GI D   ++    + +     ++ A A     L+       +   
Sbjct: 157 GSQVLPSNTSLASFFGIFDSHLEV----SSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212

Query: 438 EGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 497
                + K                     + A              L   G+ +      
Sbjct: 213 VANDLLTK-------------STDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259

Query: 498 EEAQRDFEMMMKVDKSSEPDATA------ALSKLKK 527
            +AQ   +  + +     P   +       L+  + 
Sbjct: 260 LDAQVLLQESINLH----PTPNSYIFLALTLADKEN 291

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 82.9 bits (205), Expect = 5e-17
 Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 17/139 (12%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN+ F+  K++ A   Y   L     +                  + N++AC + +G+ +
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALE----LKEDPV------------FYSNLSACYVSVGDLK 56

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           K +E   K L+  P + K L RR  A   LG+F +A  D  ++      ++      L +
Sbjct: 57  KVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLER 116

Query: 525 -LKKQRQVKLKVRLENSLK 542
            L KQ   KLK +  +   
Sbjct: 117 NLNKQAMSKLKEKFGDIDT 135

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 69.8 bits (171), Expect = 7e-13
 Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 18/109 (16%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
            + +    G   F +     A    +K +     + P+ +             ++ +A  
Sbjct: 238 ISLEHT--GIFKFLKNDPLGAHEDIKKAIE----LFPRVN------------SYIYMALI 279

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +    +  +     +K L  +  +    Y RG     L  +++A +DF+
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD 328

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 16/141 (11%), Positives = 47/141 (33%), Gaps = 26/141 (18%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----- 459
              L  +  F+ A  +Y+  +     +  + D            +++ +A  + K     
Sbjct: 379 AEILTDKNDFDKALKQYDLAIE----LENKLDG-----------IYVGIAPLVGKATLLT 423

Query: 460 ----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               +    ++     K    +P   +         +   + +EA   FE    + + + 
Sbjct: 424 RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR-TM 482

Query: 516 PDATAALSKLKKQRQVKLKVR 536
            +   A++   +  +V+ ++R
Sbjct: 483 EEKLQAIT-FAEAAKVQQRIR 502

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 66.7 bits (163), Expect = 9e-12
 Identities = 10/146 (6%), Positives = 40/146 (27%), Gaps = 24/146 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   F    ++ A   ++K       ++P++              ++ +A    +  +  
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKE----LDPENIFP-----------YIQLACLAYRENKFD 355

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA---- 520
                 ++     P   +             +F++A + +++ ++++             
Sbjct: 356 DCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK---LDGIYVGI 412

Query: 521 --ALSKLKKQRQVKLKVRLENSLKGC 544
              + K     +         +    
Sbjct: 413 APLVGKATLLTRNPTVENFIEATNLL 438

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 7/107 (6%), Positives = 31/107 (28%), Gaps = 15/107 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
              +            ++K L+    ++  +             ++ +       L    
Sbjct: 277 ALIMADRNDSTEYYNYFDKALK----LDSNNSS-----------VYYHRGQMNFILQNYD 321

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
           ++ +  +K  + +P ++    +         +F++ +  F    +  
Sbjct: 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 2/102 (1%)

Query: 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469
               ++ A   + K  R F     +++E+ K+   K  +   +         +   + E 
Sbjct: 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLK-EKLAISLEHTGIFKFLKNDPLGAHED 259

Query: 470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
             K ++  P  V       +      +  E    F+  +K+D
Sbjct: 260 IKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALKLD 300

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 13/129 (10%), Positives = 30/129 (23%), Gaps = 13/129 (10%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
               F   K EL  A Y++       +        K              +         
Sbjct: 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPES---YDKADESFTKAARLFE 220

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA---- 520
           + ++  N+           L   G+      +   A  D +  +++     P   +    
Sbjct: 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF----PRVNSYIYM 276

Query: 521 --ALSKLKK 527
              ++    
Sbjct: 277 ALIMADRND 285

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             +      +  +   +I+  N  L+     V         Y+++G+ ++      
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMST 63

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 77.2 bits (190), Expect = 1e-16
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 13/140 (9%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            D ++ K+ I++G G  P       S   +HY+    N + K  ++       QP+E   
Sbjct: 47  LDEKVSKQIIKEGHGSKPSK----YSTCFLHYRAWTKNSQHK--FEDTWHE-QQPIELVL 99

Query: 325 G-EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK--FLRPANVPEGAHIQWEIELLGFE 381
           G E     G  + V  M  GE ALV    + AY K       NVP  A + +E+E++GF+
Sbjct: 100 GKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFD 159

Query: 382 KPKDWTGLSFDGIMDEAEKI 401
           + K+         M   E+I
Sbjct: 160 ETKE---GKARSDMTVEERI 176

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 69.9 bits (171), Expect = 4e-14
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 9/141 (6%)

Query: 9   NPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIV-ES 67
            P ++           +++   + K +++ G G   PS       H    T +     E 
Sbjct: 29  EPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFED 87

Query: 68  TRSEYGGKGIPIRHVLGKSKILL-GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPS 126
           T      +  PI  VLGK K  L GL  G+ +M  GE ++  +  ++ YG++     +  
Sbjct: 88  TWH----EQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNF--SFP 141

Query: 127 TFPKDEELHFEIEMIDFAKAK 147
             P   +L +E+E+I F + K
Sbjct: 142 NVPPMADLLYEVEVIGFDETK 162

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 30/162 (18%), Positives = 65/162 (40%), Gaps = 9/162 (5%)

Query: 107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGW 166
            + + Q H  E +      +    +      +     ++A+++  D  V K++I EG G 
Sbjct: 5   LEHQTQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVL--DEKVSKQIIKEGHG- 61

Query: 167 ETPRAPYEVKAWISAKTGDGKLIL--SHREGEPYFFTFGKS-EVPKGLEMGIGTMTREEK 223
             P           A T + +     +  E +P     GK  +   GL +G+ +M   E+
Sbjct: 62  SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGER 121

Query: 224 AVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELVHLIQVRD 262
           A+++V  +       +   P V    ++ +EVE++   + ++
Sbjct: 122 ALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE 163

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 8/131 (6%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            DG ++K   ++G+G      P   + + VHY G L N     F D+  D  G    F+ 
Sbjct: 12  KDGGVLKLIKKEGQGV---VKPTTGTTVKVHYVGTLEN--GTKF-DSSRDR-GDQFSFNL 64

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPK 384
           G G V +G+++ V  M  GE+A  T   DY Y     P  +P GA + +E+EL  +   +
Sbjct: 65  GRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW-SAE 123

Query: 385 DWTGLSFDGIM 395
           D +      I+
Sbjct: 124 DISPDRDGTIL 134

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 70.8 bits (174), Expect = 6e-15
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 8/131 (6%)

Query: 28  PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSK 87
            G ++K + + G G   P+ G  V  H      +G   +S+R     +G      LG+  
Sbjct: 13  DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRD----RGDQFSFNLGRGN 68

Query: 88  ILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147
           ++ G   G+ TM KGEV+ F ++    YG+      +P   P    L FE+E+ +++   
Sbjct: 69  VIKGWDLGVATMTKGEVAEFTIRSDYGYGDA----GSPPKIPGGATLIFEVELFEWSAED 124

Query: 148 IIADDFGVVKK 158
           I  D  G + +
Sbjct: 125 ISPDRDGTILR 135

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 9/126 (7%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKG 210
           D GV+K +  EGQG   P     VK        +G    S R+ G+ + F  G+  V KG
Sbjct: 13  DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKG 72

Query: 211 LEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLG-- 265
            ++G+ TMT+ E A   + S Y      SP  P + G   + FEVEL       D+    
Sbjct: 73  WDLGVATMTKGEVAEFTIRSDYGYGDAGSP--PKIPGGATLIFEVELFE-WSAEDISPDR 129

Query: 266 DGRLIK 271
           DG +++
Sbjct: 130 DGTILR 135

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 74.6 bits (184), Expect = 2e-16
 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            D  ++K   R G GE   + P+    + VHYKG L N   K F D+  D   +P  FS 
Sbjct: 17  KDRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSN--GKKF-DSSHD-RNEPFVFSL 69

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382
           G+G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+ 
Sbjct: 70  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG 127

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 71.1 bits (175), Expect = 4e-15
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)

Query: 12  KKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSE 71
                +E  +         ++K V R G G+ TP  GD+V  H   +  +G   +S+   
Sbjct: 2   APATVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD- 60

Query: 72  YGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKD 131
              +  P    LGK +++     G+ TM KGE+     KP+  YG       +    P +
Sbjct: 61  ---RNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSA----GSLPKIPSN 113

Query: 132 EELHFEIEMIDFAK 145
             L FEIE++DF  
Sbjct: 114 ATLFFEIELLDFKG 127

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 144 AKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTF 202
            +      D GV+K V   G G ETP    +V      K  +GK   S  +  EP+ F+ 
Sbjct: 10  GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSL 69

Query: 203 GKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
           GK +V K  ++G+ TM + E   +    +Y      S   P +     + FE+EL+
Sbjct: 70  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSL--PKIPSNATLFFEIELL 123

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 73.6 bits (181), Expect = 7e-16
 Identities = 19/141 (13%), Positives = 51/141 (36%), Gaps = 21/141 (14%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D  E++   G   ++ GK++ A+  ++ +      ++  D               L + A
Sbjct: 16  DTLEQLYALGFNQYQAGKWDDAQKIFQALCM----LDHYDAR-----------YFLGLGA 60

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           C   LG   +++++ +     +    +  +     ++ LG+ + A+  F     +  +  
Sbjct: 61  CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120

Query: 516 PD------ATAALSKLKKQRQ 530
                   A A L  +  ++ 
Sbjct: 121 AHEALAARAGAMLEAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
            +   +   ++ LY  G      G++++AQ+ F+ +  +D
Sbjct: 9   MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD 48

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 73.1 bits (180), Expect = 8e-16
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 4/123 (3%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           ++  DG +IK  ++ G      + P   + + VHY G L +  K   +D+  D    P +
Sbjct: 11  ELTADGGVIKTILKKGDEG-EENIPKKGNEVTVHYVGKLESTGKV--FDSSFD-RNVPFK 66

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           F   +G V +G+++CV  M   E  LV     Y Y       ++P  + + +EIELL F 
Sbjct: 67  FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFR 126

Query: 382 KPK 384
           + +
Sbjct: 127 ELE 129

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 24/123 (19%), Positives = 56/123 (45%), Gaps = 11/123 (8%)

Query: 28  PGSLMKAVMRPGGGDS--TPSDGDQVAYHCTVRTLD-GVIVESTRSEYGGKGIPIRHVLG 84
            G ++K +++ G       P  G++V  H   +    G + +S+      + +P +  L 
Sbjct: 15  DGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSF----DRNVPFKFHLE 70

Query: 85  KSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144
           + +++ G    + +M K E  + +++    YG++        + P +  L FEIE++ F 
Sbjct: 71  QGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDE----GCGESIPGNSVLLFEIELLSFR 126

Query: 145 KAK 147
           + +
Sbjct: 127 ELE 129

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 29/119 (24%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGD-------GKLIL-------SHREGEPYF 199
           GV+K ++ +G   E              K G+       GKL         S     P+ 
Sbjct: 17  GVIKTILKKGDEGEEN----------IPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFK 66

Query: 200 FTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
           F   + EV KG ++ + +M + EK ++ + S Y            + G   + FE+EL+
Sbjct: 67  FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCG--ESIPGNSVLLFEIELL 123

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 71.8 bits (177), Expect = 1e-15
 Identities = 37/113 (32%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           +    I  G G      P       VHY GML +   K F D+  D   +P +F  G+  
Sbjct: 2   VQVETISPGDGR---TFPKRGQTCVVHYTGMLED--GKKF-DSSRDR-NKPFKFMLGKQE 54

Query: 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           V  G+E  V  M  G+ A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 55  VIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 66.8 bits (164), Expect = 7e-14
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 31  LMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILL 90
           +    + PG G + P  G     H T    DG   +S+R     +  P + +LGK +++ 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIR 57

Query: 91  GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           G  EG+  M  G+ +   + P   YG        P   P    L F++E++  
Sbjct: 58  GWEEGVAQMSVGQRAKLTISPDYAYGAT----GHPGIIPPHATLVFDVELLKL 106

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
           GV  + I+ G G   P+         +    DGK   S R+  +P+ F  GK EV +G E
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 213 MGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
            G+  M+  ++A + ++  Y    T  P   ++     + F+VEL+
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHP--GIIPPHATLVFDVELL 104

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 72.9 bits (179), Expect = 1e-15
 Identities = 14/133 (10%), Positives = 44/133 (33%), Gaps = 17/133 (12%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D  + I       + +G+ E A+  +  +       +  + +             + +AA
Sbjct: 34  DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI----YDFYNVD-----------YIMGLAA 78

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
                 + +++ +               ++  G   + L    +A+  FE++++     +
Sbjct: 79  IYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

Query: 516 --PDATAALSKLK 526
               A + L  ++
Sbjct: 139 LKIKAQSYLDAIQ 151

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 72.8 bits (179), Expect = 2e-15
 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            D  ++K   R G GE   + P+    + VHYKG L N   K F D+  D   +P  FS 
Sbjct: 33  KDRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSN--GKKF-DSSHDR-NEPFVFSL 85

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382
           G+G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+ 
Sbjct: 86  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG 143

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 68.9 bits (169), Expect = 4e-14
 Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 9/146 (6%)

Query: 1   MAVEDEDINPQKKKAPSEDDKRRMKIV-PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRT 59
              E    N +   A   +    +       ++K V R G G+ TP  GD+V  H   + 
Sbjct: 6   TTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 65

Query: 60  LDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDD 119
            +G   +S+      +  P    LGK +++     G+ TM KGE+     KP+  YG   
Sbjct: 66  SNGKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAG 121

Query: 120 CPVAAPSTFPKDEELHFEIEMIDFAK 145
               +    P +  L FEIE++DF  
Sbjct: 122 ----SLPKIPSNATLFFEIELLDFKG 143

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 144 AKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTF 202
            +      D GV+K V   G G ETP    +V      K  +GK   S  +  EP+ F+ 
Sbjct: 26  GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSL 85

Query: 203 GKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
           GK +V K  ++G+ TM + E   +    +Y      S   P +     + FE+EL+
Sbjct: 86  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSL--PKIPSNATLFFEIELL 139

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 7/121 (5%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEK---KVFYDTRVDNDGQPLE 321
           G  +  K  ++ G      + P    ++   Y G L +       +   ++   + +PL 
Sbjct: 2   GPPKYTKSILKKGDKT---NFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLS 58

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV-PEGAHIQWEIELLGF 380
           F  G G V  G++  +  M  GE A +   P++AY K  +P    P    + +E+EL+  
Sbjct: 59  FKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118

Query: 381 E 381
           +
Sbjct: 119 D 119

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 67.7 bits (166), Expect = 4e-14
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 28  PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVES---TRSEYGGKGIPIRHVLG 84
           P    K++++ G   + P  GD V    T    DG + ++   T S+      P+   +G
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVG 62

Query: 85  KSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
             K++ G  E + TM KGE +  +++P+  YG+   P A     P + +L FE+E++D 
Sbjct: 63  VGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDA---KIPPNTKLIFEVELVDI 118

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 16/115 (13%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGK--------LILSHREGEPYFFTFGKS 205
              K ++ +G     P+    V  W +    DG              +  +P  F  G  
Sbjct: 5   KYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVG 64

Query: 206 EVPKGLEMGIGTMTREEKAVIYVTSQYL-----TPSPLMPVVEGCEEVHFEVELV 255
           +V +G +  + TM++ EKA + +  ++       P   +P      ++ FEVELV
Sbjct: 65  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIP---PNTKLIFEVELV 116

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 70.7 bits (174), Expect = 3e-15
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 294 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 353
           +HY G L +     F D+ +    QP  FS G G V +G++  +  M  GE   +  P +
Sbjct: 14  MHYTGKLED--GTEF-DSSLPQ-NQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSE 69

Query: 354 YAYDKFLRPANVPEGAHIQWEIELLGFEKPKD 385
             Y +   P  +P GA + +E+ELL  E+  +
Sbjct: 70  LGYGERGAPPKIPGGATLVFEVELLKIERRTE 101

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 52.9 bits (128), Expect = 4e-09
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 39  GGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT 98
           G        GD +  H T +  DG   +S+      +  P    LG  +++ G  +G+  
Sbjct: 1   GSPI-KSRKGDVLHMHYTGKLEDGTEFDSSLP----QNQPFVFSLGTGQVIKGWDQGLLG 55

Query: 99  MLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147
           M +GE     +  ++ YGE      AP   P    L FE+E++   +  
Sbjct: 56  MCEGEKRKLVIPSELGYGER----GAPPKIPGGATLVFEVELLKIERRT 100

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 191 SHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEE 247
           S  + +P+ F+ G  +V KG + G+  M   EK  + + S+       +P  P + G   
Sbjct: 29  SLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAP--PKIPGGAT 86

Query: 248 VHFEVELVHLIQVRDM 263
           + FEVEL+ + +  ++
Sbjct: 87  LVFEVELLKIERRTEL 102

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 7/114 (6%)

Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           +G +   RI  G G      P    L+ +HY G L N   + F D+ VD  G P + + G
Sbjct: 5   EGNVKIDRISPGDGA---TFPKTGDLVTIHYTGTLEN--GQKF-DSSVDR-GSPFQCNIG 57

Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 379
            G V +G+++ +  +  GE A +T P  YAY     P  +P  + + +++ELL 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLK 111

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 8/118 (6%)

Query: 25  KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLG 84
           +++ G++    + PG G + P  GD V  H T    +G   +S+      +G P +  +G
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVD----RGSPFQCNIG 57

Query: 85  KSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
             +++ G   GIP +  GE +   +     YG        P   P +  L F++E++ 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPR----GFPGLIPPNSTLVFDVELLK 111

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
            V    I+ G G   P+    V    +    +G+   S  + G P+    G  +V KG +
Sbjct: 7   NVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWD 66

Query: 213 MGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
           +GI  ++  EKA + +   Y       P   ++     + F+VEL+
Sbjct: 67  VGIPKLSVGEKARLTIPGPYAYGPRGFP--GLIPPNSTLVFDVELL 110

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 7/114 (6%)

Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
             +L K+ +  G G      P     + VHY G   +   K F D+     G+P +F+ G
Sbjct: 23  SAQLEKKVLTPGDGV---TKPQAGKKVTVHYDGRFPD--GKQF-DSSRSR-GKPFQFTLG 75

Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 379
            G V +G++  V  M  GE AL T P   AY +   P  +P  A + +E+ELL 
Sbjct: 76  AGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 65.7 bits (161), Expect = 3e-13
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 8/134 (5%)

Query: 9   NPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVEST 68
           +        E   +    +   L K V+ PG G + P  G +V  H   R  DG   +S+
Sbjct: 4   HHHHHMGTLEAQTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSS 63

Query: 69  RSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTF 128
           RS    +G P +  LG  +++ G  +G+ TM  GE ++F +  Q+ YGE       P   
Sbjct: 64  RS----RGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGER----GYPPVI 115

Query: 129 PKDEELHFEIEMID 142
           P    L FE+E++ 
Sbjct: 116 PPKATLVFEVELLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 6/128 (4%)

Query: 132 EELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILS 191
              H  +  ++       +    + KKV+  G G   P+A  +V      +  DGK   S
Sbjct: 3   HHHHHHMGTLEAQTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDS 62

Query: 192 HRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEE 247
            R  G+P+ FT G  EV KG + G+ TMT  EKA+  +  Q        P  PV+     
Sbjct: 63  SRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYP--PVIPPKAT 120

Query: 248 VHFEVELV 255
           + FEVEL+
Sbjct: 121 LVFEVELL 128

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 67.8 bits (166), Expect = 4e-13
 Identities = 18/122 (14%), Positives = 43/122 (35%), Gaps = 5/122 (4%)

Query: 405 GNRLFKEGKFELAKAKYEKVLR-DFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 463
            +   + G+   A + + + +  + +                 + L   +A    K    
Sbjct: 11  VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY 70

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523
            K+     ++L   P +V  L       +  G+ ++A R +E +++++     D  AA  
Sbjct: 71  DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE----ADNLAANI 126

Query: 524 KL 525
            L
Sbjct: 127 FL 128

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 67.1 bits (164), Expect = 6e-13
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 18/127 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-C 463
                  G+ + A   YEK+L+    +   +              ++ +        E  
Sbjct: 95  AEMQVCRGQEKDALRMYEKILQ----LEADNLA-----------ANIFLGNYYYLTAEQE 139

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523
           +K +E   K L +        YR G++ +    +E+A+   + ++    S+E  A   L 
Sbjct: 140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE--AQKTLD 197

Query: 524 KLKKQRQ 530
           K+ +  +
Sbjct: 198 KILRIEK 204

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 14/122 (11%), Positives = 33/122 (27%), Gaps = 20/122 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                K   ++ A   Y+++L+      P + +                A   +  G+ +
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQ----KAPNNVD-----------CLEACAEMQVCRGQEK 105

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE-EAQRDFEMMMKVDKSSEPDATAALS 523
            ++    K+L     ++      G  Y    E E +        +            A  
Sbjct: 106 DALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP----TKMQYARY 161

Query: 524 KL 525
           + 
Sbjct: 162 RD 163

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 9/92 (9%), Positives = 29/92 (31%), Gaps = 20/92 (21%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR----------------GMAYMA 493
            L   +  ++ G+  +++    + +  N    +  Y                   +AY  
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 494 LGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525
              +++A   ++ +++      P+    L   
Sbjct: 67  NRNYDKAYLFYKELLQKA----PNNVDCLEAC 94

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 65.0 bits (159), Expect = 5e-13
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 294 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 353
           VHY+G L  +    F+ T   N+GQP+ F+ G     +G++  ++ M  GE   +  PP 
Sbjct: 37  VHYEGYLEKDGSL-FHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPA 95

Query: 354 YAYDKFLRPANVPEGAHIQWEIELLGFEKP 383
             Y K      +P  + + + I+LL     
Sbjct: 96  LGYGK-EGKGKIPPESTLIFNIDLLEIRNG 124

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 37  RPGGGDSTPSDGDQVAYHCTVR-TLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEG 95
           +P         GD +  H       DG +  ST     G+  PI   LG  + L G  +G
Sbjct: 21  KPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQ--PIWFTLGILEALKGWDQG 78

Query: 96  IPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA 146
           +  M  GE     + P + YG+           P +  L F I++++    
Sbjct: 79  LKGMCVGEKRKLIIPPALGYGK-----EGKGKIPPESTLIFNIDLLEIRNG 124

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 64.5 bits (156), Expect = 2e-12
 Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 16/151 (10%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
            A        R    G+++ A A   + + + +H  P   EE     G     H  +A  
Sbjct: 10  GAYLALSDAQRQLVAGEYDEAAANCRRAM-EISHTMP--PEEAFDHAGFDAFCHAGLAEA 66

Query: 457 LLKLGECRKSIEACNKVL-----------DANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           L  L    +++ + +K L           D     +  +Y R +A   LG   EA  +F+
Sbjct: 67  LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 126

Query: 506 MM--MKVDKSSEPDATAALSKLKKQRQVKLK 534
            +  M  ++  E      + ++   R  +L 
Sbjct: 127 KVVEMIEERKGETPGKERMMEVAIDRIAQLG 157

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 63.8 bits (155), Expect = 2e-12
 Identities = 18/143 (12%), Positives = 50/143 (34%), Gaps = 21/143 (14%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D  E++       ++ G +E A   ++ +      ++  D               L + A
Sbjct: 19  DTLEQLYSLAFNQYQSGXYEDAHXVFQALCV----LDHYDSR-----------FFLGLGA 63

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           C   +G+   +I + +     +    +  +      +  GE  EA+    +  ++  +  
Sbjct: 64  CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123

Query: 516 PD------ATAALSKLKKQRQVK 532
                    ++ L  +K ++++K
Sbjct: 124 EFXELSTRVSSMLEAIKLKKEMK 146

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L K+G+  LA  +Y+  +      +    +           ++  + +     G   
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVD----RDTTRLD-----------MYGQIGSYFYNKGNFP 125

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I+   K +       K  Y  G AY    E+ +A   F 
Sbjct: 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV 166

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 18/104 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G+  + +G F LA    EK +R        D +           +   +        E  
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIR----PTTTDPK-----------VFYELGQAYYYNKEYV 159

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALG---EFEEAQRDFE 505
           K+  +  KVL+  P    G   R  A  A     +   A+  +E
Sbjct: 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 18/104 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            + LFK   +  A   + K+                        ++   A C  +L +  
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEA----KKYNSPY-----------IYNRRAVCYYELAKYD 54

Query: 465 KSIEACN---KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            + +        ++A  A        G   M  G+   A + ++
Sbjct: 55  LAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQ 98

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
               A  L K     ++IE  NK+            RR + Y  L +++ AQ+D E    
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65

Query: 510 VDKSSEPDATA------ALSKLKK 527
              +++  +         L K  +
Sbjct: 66  KVNATKAKSADFEYYGKILMKKGQ 89

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 16/141 (11%), Positives = 37/141 (26%), Gaps = 34/141 (24%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   +   ++  A + + KVL     + P                +L  A          
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLE----LKPNIYI-----------GYLWRARANAAQDPDT 193

Query: 465 K---SIEACNKVL--------DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513
           K   +     K++              ++        Y    +  +A   ++ ++ +D  
Sbjct: 194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-- 251

Query: 514 SEPDATAALSK----LKKQRQ 530
             P    A+      L+    
Sbjct: 252 --PTNKKAIDGLKMKLEHHHH 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
              L   G  E A   Y   L+     NP               +  ++   L  LG   
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQ----YNPDLYC-----------VRSDLGNLLKALGRLE 152

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++     K ++  P         G  + A GE   A   FE
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 65.3 bits (160), Expect = 2e-11
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            +R ++ G FE A+    ++ R      P +             + L +++   +     
Sbjct: 6   AHREYQAGDFEAAERHCMQLWR----QEPDNTG-----------VLLLLSSIHFQCRRLD 50

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +S       +  NP   +     G  Y   G+ +EA   + 
Sbjct: 51  RSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.1 bits (157), Expect = 3e-11
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            +  F+  + + +       ++     NP   E            + N+     + G+ +
Sbjct: 40  SSIHFQCRRLDRSAHFSTLAIK----QNPLLAE-----------AYSNLGNVYKERGQLQ 84

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++IE     L   P  + G      A +A G+ E A + + 
Sbjct: 85  EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.1 bits (157), Expect = 4e-11
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 19/121 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
               +++G  +LA   Y + +     + P   +            + N+A  L + G   
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIE----LQPHFPD-----------AYCNLANALKEKGSVA 288

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           ++ +  N  L   P H   L          G  EEA R +   ++V     P+  AA S 
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEFAAAHSN 344

Query: 525 L 525
           L
Sbjct: 345 L 345

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.1 bits (157), Expect = 4e-11
 Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN L   G+ E AKA Y K +       P                  N+       GE  
Sbjct: 142 GNLLKALGRLEEAKACYLKAIE----TQPNFAV-----------AWSNLGCVFNAQGEIW 186

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I    K +  +P  +      G        F+ A   + 
Sbjct: 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.3 bits (155), Expect = 5e-11
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G     +G+  LA   +EK +     ++P   +            ++N+   L +     
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVT----LDPNFLD-----------AYINLGNVLKEARIFD 220

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +++ A  + L  +P H          Y   G  + A   + 
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.9 bits (154), Expect = 9e-11
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN   + G+ + A   Y   LR    + P   +            ++N+AA L+  G+  
Sbjct: 74  GNVYKERGQLQEAIEHYRHALR----LKPDFID-----------GYINLAAALVAAGDME 118

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +++A    L  NP         G    ALG  EEA+  + 
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 19/121 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            N L ++G    A+  Y   LR    + P   +              N+A    + G   
Sbjct: 278 ANALKEKGSVAEAEDCYNTALR----LCPTHAD-----------SLNNLANIKREQGNIE 322

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           +++    K L+  P                G+ +EA   ++  +++     P    A S 
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS----PTFADAYSN 378

Query: 525 L 525
           +
Sbjct: 379 M 379

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.9 bits (146), Expect = 7e-10
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN L +   F+ A A Y + L     ++P               +H N+A    + G   
Sbjct: 210 GNVLKEARIFDRAVAAYLRALS----LSPNHAV-----------VHGNLACVYYEQGLID 254

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I+   + ++  P           A    G   EA+  + 
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 15/92 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            N   ++G  E A   Y K L     V P+               H N+A+ L + G+ +
Sbjct: 312 ANIKREQGNIEEAVRLYRKALE----VFPEFAA-----------AHSNLASVLQQQGKLQ 356

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGE 496
           +++    + +  +P         G     + +
Sbjct: 357 EALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.4 bits (124), Expect = 4e-07
 Identities = 5/55 (9%), Positives = 16/55 (29%)

Query: 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           + +A    + G+   +   C ++    P +   L      +      + +     
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST 57

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   F+ G+++ A+  +   L     +  +   +      K   L  N+     KL +  
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD------KWEPLLNNLGHVCRKLKKYA 253

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           ++++   + L   P +       G  +  +G FE A   F   + +      D T +++ 
Sbjct: 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR----RDDTFSVTM 309

Query: 525 LKK 527
           L  
Sbjct: 310 LGH 312

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 12/96 (12%), Positives = 26/96 (27%), Gaps = 15/96 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G+   K  K+  A   + + L     + PQ+              +  +      +G   
Sbjct: 243 GHVCRKLKKYAEALDYHRQALV----LIPQNAS-----------TYSAIGYIHSLMGNFE 287

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 500
            +++  +  L         +   G          EA
Sbjct: 288 NAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 17/116 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLR-DFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 463
           G+    E + + A A Y    +       P                 L +          
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLP----------------MLYIGLEYGLTNNS 175

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT 519
           + +    ++ L   P     ++  G+     GE++ A++ F   ++  K+   + T
Sbjct: 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 16/102 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
             R +    F++       V+      +P                       L++L +  
Sbjct: 29  AERHYYNCDFKMCYKLTSVVME----KDPFHAS-----------CLPVHIGTLVELNKAN 73

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGE-FEEAQRDFE 505
           +     +K++D  P++    +  G  Y+ +G   E A+R   
Sbjct: 74  ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLS 115

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 12/102 (11%), Positives = 22/102 (21%), Gaps = 16/102 (15%)

Query: 405 GNRLFKEGK-FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 463
           G      G   E A+    K       +                   +          E 
Sbjct: 97  GCYYLMVGHKNEHARRYLSKATT----LEKTYGP-----------AWIAYGHSFAVESEH 141

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +++ A              +   G+ Y      + A+R F 
Sbjct: 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 8/66 (12%), Positives = 25/66 (37%)

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
           + +++A       + +   +  + V++ +P H   L       + L +  E       ++
Sbjct: 24  VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83

Query: 509 KVDKSS 514
            +  S+
Sbjct: 84  DLYPSN 89

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 61.7 bits (151), Expect = 3e-11
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 19/123 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    +  K++LA     KV       NP +             +   +   L  LG   
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAE----ANPINFN-----------VRFRLGVALDNLGRFD 127

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           ++I++    L   P   K       +Y  +G  EEA   F+   ++D      A+  L+ 
Sbjct: 128 EAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD----EGASVELAL 183

Query: 525 LKK 527
           + +
Sbjct: 184 VPR 186

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 60.2 bits (147), Expect = 9e-11
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    K G++  A    E+V       +  D +           + L++    +K G   
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYD----ADAFDVD-----------VALHLGIAYVKTGAVD 59

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +  E   + L   P +VK     G+ Y+ + +++ A     
Sbjct: 60  RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLI 100

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 57.1 bits (139), Expect = 9e-10
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    K G  +      E+ L       P + +           +   +    +++ +  
Sbjct: 49  GIAYVKTGAVDRGTELLERSLA----DAPDNVK-----------VATVLGLTYVQVQKYD 93

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            ++    KV +ANP +    +R G+A   LG F+EA   F+
Sbjct: 94  LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 46.3 bits (111), Expect = 5e-06
 Identities = 11/56 (19%), Positives = 21/56 (37%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           + +      K G   +++    +V DA+   V      G+AY+  G  +      E
Sbjct: 11  YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLE 66

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           L    + +G G            + VHY G L +   + F D+  D    P  F  G G+
Sbjct: 30  LKYEDLTEGSGAEARA----GQTVSVHYTGWLTD--GQKF-DSSKDR-NDPFAFVLGGGM 81

Query: 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 379
           V +G++  V+ M  G +  +T PP   Y        +P  A + +E+ELL 
Sbjct: 82  VIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 50.3 bits (121), Expect = 9e-08
 Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 11/136 (8%)

Query: 9   NPQKKKAPSEDDKRRMKIV--PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVE 66
           +     +        M +V     L    +  G G      G  V+ H T    DG   +
Sbjct: 6   HHHHHSSGLVPRGSHMTVVTTESGLKYEDLTEGSGA-EARAGQTVSVHYTGWLTDGQKFD 64

Query: 67  STRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPS 126
           S++     +  P   VLG   ++ G  EG+  M  G V    + PQ+ YG       A  
Sbjct: 65  SSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGAR----GAGG 116

Query: 127 TFPKDEELHFEIEMID 142
             P +  L FE+E++D
Sbjct: 117 VIPPNATLVFEVELLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 7/116 (6%)

Query: 144 AKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTF 202
           +   ++  + G+  + + EG G    RA   V    +    DG+   S ++  +P+ F  
Sbjct: 19  SHMTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVL 77

Query: 203 GKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
           G   V KG + G+  M       + +  Q       +    V+     + FEVEL+
Sbjct: 78  GGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG--GVIPPNATLVFEVELL 131

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G      G   LA+  + + L     + P   E           +   +   L + G   
Sbjct: 50  GVLYDSLGLRALARNDFSQALA----IRPDMPE-----------VFNYLGIYLTQAGNFD 94

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            + EA + VL+ +P +      RG+A    G  + AQ D  
Sbjct: 95  AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 11/101 (10%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
              L    + E+  A+ E++L      + +  +           L          LG   
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQ-----------LLYERGVLYDSLGLRA 60

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +    ++ L   P   +     G+     G F+ A   F+
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 15/130 (11%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L + G F+ A   ++ VL     ++P  +             HLN    L   G  +
Sbjct: 84  GIYLTQAGNFDAAYEAFDSVLE----LDPTYNY-----------AHLNRGIALYYGGRDK 128

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
            + +        +P          +A   L E +  +   +   K DK            
Sbjct: 129 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 188

Query: 525 LKKQRQVKLK 534
                Q  ++
Sbjct: 189 GNISEQTLME 198

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 10/99 (10%), Positives = 26/99 (26%), Gaps = 15/99 (15%)

Query: 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 466
            + ++   E  KA           +     E            +  +    L LG+   +
Sbjct: 190 NISEQTLMERLKADATDNTS----LAEHLSE-----------TNFYLGKYYLSLGDLDSA 234

Query: 467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                  +  N  +        +    LG+ ++   + +
Sbjct: 235 TALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 62.1 bits (151), Expect = 3e-11
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           L    + +G G            + VHY G L +   + F D+  D    P  F  G G+
Sbjct: 106 LKYEDLTEGSGAEARA----GQTVSVHYTGWLTD--GQKF-DSSKDR-NDPFAFVLGGGM 157

Query: 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 379
           V +G++  V+ M  G +  +T PP   Y        +P  A + +E+ELL 
Sbjct: 158 VIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 35/143 (24%), Positives = 53/143 (37%), Gaps = 11/143 (7%)

Query: 2   AVEDEDINPQKKKAPSEDDKRRMKIV--PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRT 59
             ED D+          +      +V     L    +  G G      G  V+ H T   
Sbjct: 75  TPEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSGA-EARAGQTVSVHYTGWL 133

Query: 60  LDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDD 119
            DG   +S++     +  P   VLG   ++ G  EG+  M  G V    + PQ+ YG   
Sbjct: 134 TDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGAR- 188

Query: 120 CPVAAPSTFPKDEELHFEIEMID 142
               A    P +  L FE+E++D
Sbjct: 189 ---GAAGVIPPNATLVFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 5/151 (3%)

Query: 83  LGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
           + K+  L  L+E        E+   +       G        P     ++    E     
Sbjct: 37  IKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIRIQADQTPEDLDMEDNDIIEAHREQ 93

Query: 143 FAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFT 201
              + ++  + G+  + + EG G    RA   V    +    DG+   S ++  +P+ F 
Sbjct: 94  IGGSTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFV 152

Query: 202 FGKSEVPKGLEMGIGTMTREEKAVIYVTSQY 232
            G   V KG + G+  M       + +  Q 
Sbjct: 153 LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQL 183

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 61.8 bits (151), Expect = 6e-11
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
             R  + G +E A   + K +      N +D              ++N A  L  + E  
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIE----ENKEDAI-----------PYINFANLLSSVNELE 74

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +++   +K L+ + +     Y  G  Y+    ++EA+  FE
Sbjct: 75  RALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFE 115

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 61.8 bits (151), Expect = 6e-11
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN    +  ++ AK  +EK LR       ++ +           L   +   L+KL + +
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALR----AGMENGD-----------LFYMLGTVLVKLEQPK 142

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            ++    + ++ N    +  ++ GM     G  +EA   F 
Sbjct: 143 LALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            N L    + E A A Y+K L     ++                 +       +     +
Sbjct: 64  ANLLSSVNELERALAFYDKALE----LDSSAAT-----------AYYGAGNVYVVKEMYK 108

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++ +   K L A   +    Y  G   + L + + A    +
Sbjct: 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L K  + +LA    ++ +     +N  D E                  CL   G   
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVE----LNENDTE-----------ARFQFGMCLANEGMLD 176

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +++     V + +P H    Y  G+ Y      E+A    +
Sbjct: 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD 217

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 15/92 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L  EG  + A +++  V       +P   +              N            
Sbjct: 166 GMCLANEGMLDEALSQFAAVTE----QDPGHAD-----------AFYNAGVTYAYKENRE 210

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGE 496
           K++E  +K +D  P H+  L+ + +       
Sbjct: 211 KALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 50.2 bits (121), Expect = 5e-07
 Identities = 10/89 (11%), Positives = 24/89 (26%), Gaps = 11/89 (12%)

Query: 417 AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476
           +   +           P+            ++          + G+  K+ EA  K ++ 
Sbjct: 4   SHHHHHHSSGLV----PRGSHM-------ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE 52

Query: 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           N               ++ E E A   ++
Sbjct: 53  NKEDAIPYINFANLLSSVNELERALAFYD 81

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 62.7 bits (153), Expect = 6e-11
 Identities = 14/148 (9%), Positives = 39/148 (26%), Gaps = 21/148 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  + K      A   +E V +      P+ +E              ++     +  +  
Sbjct: 28  GLSMLKLANLAEAALAFEAVCQ----AAPEREE-----------AWRSLGLTQAENEKDG 72

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
            +I A N     +P  +       +++        A       +       P      S 
Sbjct: 73  LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ----PQYEQLGSV 128

Query: 525 LKKQRQVKLKVRLENSLKGCLTRSLGKF 552
             +       + +++  +     +  ++
Sbjct: 129 NLQADVDIDDLNVQS--EDFFFAAPNEY 154

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G        ++ A A   + +     + P D +           L   + A L      +
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVE----LRPDDAQ-----------LWNKLGATLANGNRPQ 223

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++++A N+ LD NP +V+ +Y   ++Y  + +++ A +   
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 8/105 (7%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----EGKVFVGKRNLLHLNVAACLLKL 460
                 E     A A     L       PQ ++      +  V   +L   +        
Sbjct: 96  AVSHTNEHNANAALASLRAWLL----SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP 151

Query: 461 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            E R+     +  L+ NP   +     G+ Y     ++ A  +  
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLR 196

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 10/96 (10%), Positives = 24/96 (25%), Gaps = 15/96 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                   ++   +      L     +NP D +           LH ++           
Sbjct: 145 DFFFAAPNEYRECRTLLHAALE----MNPNDAQ-----------LHASLGVLYNLSNNYD 189

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 500
            +     + ++  P   +   + G         +EA
Sbjct: 190 SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEA 225

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 15/94 (15%), Positives = 22/94 (23%), Gaps = 15/94 (15%)

Query: 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471
           G        Y      F   NP    E            +     +LKL    ++  A  
Sbjct: 1   GHMLQNNTDYP-----FEANNPYMYHEN----------PMEEGLSMLKLANLAEAALAFE 45

Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            V  A P   +     G+      +   A     
Sbjct: 46  AVCQAAPEREEAWRSLGLTQAENEKDGLAIIALN 79

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 10/114 (8%), Positives = 26/114 (22%), Gaps = 27/114 (23%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L    + + A   Y + L     +NP               +  N+A     + +  
Sbjct: 213 GATLANGNRPQEALDAYNRALD----INPGYVR-----------VMYNMAVSYSNMSQYD 257

Query: 465 KSIEACNKVLDANPAHVKGLYRR------------GMAYMALGEFEEAQRDFEM 506
            + +   + +                          M    +   +  +  +  
Sbjct: 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 63.7 bits (155), Expect = 8e-11
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            + LF   +F    A   K+L     ++P + +           ++    A L + GE  
Sbjct: 312 ADTLFVRSRFIDVLAITTKILE----IDPYNLD-----------VYPLHLASLHESGEKN 356

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           K     N ++D +P         G+ Y+ + +  EA+R F 
Sbjct: 357 KLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFS 397

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 12/123 (9%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   F +   + A   ++  L         +                N+     KL    
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEK--------PWAATWANLGHAYRKLKMYD 533

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
            +I+A N+ L  +           + Y+       A       + +     P+   A   
Sbjct: 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS----PNEIMASDL 589

Query: 525 LKK 527
           LK+
Sbjct: 590 LKR 592

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 13/108 (12%), Positives = 23/108 (21%), Gaps = 22/108 (20%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G +  + G   LA    +        +   D             L   +        + +
Sbjct: 448 GMQHMQLGNILLANEYLQSSYA----LFQYDPL-----------LLNELGVVAFNKSDMQ 492

Query: 465 KSIEACNKVLDA-------NPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I      L                    G AY  L  ++ A     
Sbjct: 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 18/124 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            +    EG+ + A + Y    R    +                  +L +    ++LG   
Sbjct: 414 AHSFAIEGEHDQAISAYTTAAR----LFQGTHL-----------PYLFLGMQHMQLGNIL 458

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE---MMMKVDKSSEPDATAA 521
            + E               L   G+      + + A   F+   +++K  +S+E    A 
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518

Query: 522 LSKL 525
            + L
Sbjct: 519 WANL 522

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G       K   A+  + K       ++PQ                +  A      GE  
Sbjct: 380 GIYYLCVNKISEARRYFSKSST----MDPQFGP-----------AWIGFAHSFAIEGEHD 424

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++I A                  GM +M LG    A    +
Sbjct: 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 15/121 (12%), Positives = 32/121 (26%), Gaps = 12/121 (9%)

Query: 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNV 453
             ++A  +R        +   E    + E  L   N    +  +           L L  
Sbjct: 264 SKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING-LEKSSD-----------LLLCK 311

Query: 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513
           A  L         +    K+L+ +P ++        +    GE  +       ++     
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371

Query: 514 S 514
            
Sbjct: 372 K 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 15/87 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G+   K   ++ A     + L     ++  D             +H  +A   L      
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLL----LSTNDAN-----------VHTAIALVYLHKKIPG 567

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAY 491
            +I   ++ L  +P  +        A 
Sbjct: 568 LAITHLHESLAISPNEIMASDLLKRAL 594

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 18/101 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G     +  ++ A       L  F+ V                 +  N+      L    
Sbjct: 13  GVLAADKKDWKGA-------LDAFSAVQDPHSR-----------ICFNIGCMYTILKNMT 54

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++ +A  + ++ +       ++RGM Y    +++ A +D +
Sbjct: 55  EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 95

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 13/148 (8%), Positives = 36/148 (24%), Gaps = 32/148 (21%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G           A+  + + +      +                 +        +  +  
Sbjct: 44  GCMYTILKNMTEAEKAFTRSIN----RDKHLAV-----------AYFQRGMLYYQTEKYD 88

Query: 465 KSIEACNKVLDANPA----------------HVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
            +I+   + L                       + LY     Y    E+++A+    +  
Sbjct: 89  LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148

Query: 509 KVD-KSSEPDATAALSKLKKQRQVKLKV 535
            +  +        A+  + KQ+  +  V
Sbjct: 149 SMKSEPRHSKIDKAMECVWKQKLYEPVV 176

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 15/121 (12%), Positives = 32/121 (26%), Gaps = 19/121 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            +     G     +   ++ L     ++P   E               +           
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLA----LHPGHPE-----------AVARLGRVRWTQQRHA 74

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           ++     +  DA P H       G A    G+ E A   +    ++     P+     ++
Sbjct: 75  EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL----PEEPYITAQ 130

Query: 525 L 525
           L
Sbjct: 131 L 131

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 19/114 (16%)

Query: 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471
                   +    +R      PQD               L +A   L +G+      A  
Sbjct: 3   ADGPRELLQLRAAVR----HRPQDFV-----------AWLMLADAELGMGDTTAGEMAVQ 47

Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525
           + L  +P H + + R G          EA    +          P+       L
Sbjct: 48  RGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA----PEHPGIALWL 97

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 15/119 (12%), Positives = 40/119 (33%), Gaps = 17/119 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L+++ ++E A  +  +  +D   + P+              +  N+    L++ +  
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDT--LYPERSR-----------VFENLGLVSLQMKKPA 158

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523
           ++ E   K L  N                  E+  A++ +++  +           +L 
Sbjct: 159 QAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG----GQNARSLL 213

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    + G  E AK    K L     ++P   +            H  +A       E +
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALE----IDPSSAD-----------AHAALAVVFQTEMEPK 88

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            + E   K L ++  + + L   G        +EEA +   
Sbjct: 89  LADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 10/101 (9%), Positives = 29/101 (28%), Gaps = 16/101 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            + L   G     +    K  +       +  +            ++ +    L+ G   
Sbjct: 11  SSGLVPRGSHMGDQN-PLKTDKG----RDEARD-----------AYIQLGLGYLQRGNTE 54

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++     K L+ +P+         + +    E + A  ++ 
Sbjct: 55  QAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYR 95

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 19/117 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    +  K   AK  +EK LR    +N                + L +A  L K  E  
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLR----LNRNQPS-----------VALEMADLLYKEREYV 192

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA 521
            + +  +        + + L           + + A      + ++     P +   
Sbjct: 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY----PGSLEY 245

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 56.3 bits (137), Expect = 4e-10
 Identities = 13/103 (12%), Positives = 34/103 (33%), Gaps = 17/103 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   +  G +  +   +EK ++    ++P++ +             L     L  L    
Sbjct: 13  GVLQYDAGNYTESIDLFEKAIQ----LDPEESK-----------YWLMKGKALYNLERYE 57

Query: 465 KSIEACNKVLD--ANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++++  N V++   +  +      +  A   +   E      E
Sbjct: 58  EAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAE 100

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 50.1 bits (121), Expect = 6e-08
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 7/84 (8%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
           +          G   +SI+   K +  +P   K    +G A   L  +EEA   +  ++ 
Sbjct: 9   YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68

Query: 510 VDKSSEPDATA------ALSKLKK 527
           V +    +         AL  ++ 
Sbjct: 69  VIEDEY-NKDVWAAKADALRYIEG 91

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G +  KEG   +     E  +      +P D E               +     +    +
Sbjct: 72  GLKRLKEGDLPVTILFMEAAIL----QDPGDAE-----------AWQFLGITQAENENEQ 116

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I A  + L+  P ++K L    ++Y      ++A    +
Sbjct: 117 AAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK 157

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G      G+F  A   +   L     V P+D             L   + A L       
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALT----VRPEDYS-----------LWNRLGATLANGDRSE 264

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +++EA  + L+  P  ++  Y  G++ + LG + EA  +F 
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFL 305

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 11/109 (10%), Positives = 32/109 (29%), Gaps = 15/109 (13%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    +    + A    ++ L     + P + +             + +A         +
Sbjct: 106 GITQAENENEQAAIVALQRCLE----LQPNNLK-----------ALMALAVSYTNTSHQQ 150

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513
            + EA    +  NP +   +  +  +        ++  D  ++  V + 
Sbjct: 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 11/108 (10%)

Query: 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 457
            E  R       +E + ++  +  EK    F+  NP  D  G                  
Sbjct: 27  EEMARRNWISENQEAQNQVTVSASEKGYY-FHTENPFKDWPG----------AFEEGLKR 75

Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           LK G+   +I      +  +P   +     G+        + A    +
Sbjct: 76  LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQ 123

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 17/102 (16%), Positives = 25/102 (24%), Gaps = 15/102 (14%)

Query: 405 GNRLFKEGKFELAKA---KYEKVLRDFN---HVNPQDDEEGKVFVGKRNLLHLNVAACLL 458
                   +   +       E V   +    H N    +           L   +     
Sbjct: 174 KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD---------LQTGLGVLFH 224

Query: 459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 500
             GE  ++I+A N  L   P       R G         EEA
Sbjct: 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA 266

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 13/113 (11%), Positives = 27/113 (23%), Gaps = 27/113 (23%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                     + A    +  ++     NP+              L  N            
Sbjct: 140 AVSYTNTSHQQDACEALKNWIK----QNPKYKY-----------LVKNKKGSPGLTRRMS 184

Query: 465 KSIEACNKVLDANPAHVKGLYR------------RGMAYMALGEFEEAQRDFE 505
           KS    + +      +++  ++             G+ +   GEF  A   F 
Sbjct: 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 237

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G R  +EG    A   +E  ++     +P+  E               +     +  +  
Sbjct: 71  GLRRLQEGDLPNAVLLFEAAVQ----QDPKHME-----------AWQYLGTTQAENEQEL 115

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I A  + L+  P +   L    +++       +A     
Sbjct: 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 156

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G      G+++ A   +   L     V P D             L   + A L    +  
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALS----VRPNDYL-----------LWNKLGATLANGNQSE 268

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +++ A  + L+  P +++  Y  G++ + LG   EA   F 
Sbjct: 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 309

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 10/107 (9%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----EGKVFVGKRNLLHLNVAACLLKL 460
                 E     A       LR      P          +   G        +   LL  
Sbjct: 139 AVSFTNESLQRQACEILRDWLR----YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194

Query: 461 GECRKSIEACNKVLDANPAHV--KGLYRRGMAYMALGEFEEAQRDFE 505
               +  E     +  +P  +        G+ +   GE+++A   F 
Sbjct: 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 241

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 11/97 (11%)

Query: 409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE 468
           +     +L  A Y+K  + F   NP  D                     L+ G+   ++ 
Sbjct: 37  WLSDYDDLTSATYDKGYQ-FEEENPLRDHPQ----------PFEEGLRRLQEGDLPNAVL 85

Query: 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                +  +P H++     G       +   A     
Sbjct: 86  LFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 13/96 (13%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
              L  +  F   K  +   +R    ++P   +           +   +       GE  
Sbjct: 188 LGSLLSDSLFLEVKELFLAAVR----LDPTSIDPD---------VQCGLGVLFNLSGEYD 234

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 500
           K+++     L   P       + G       + EEA
Sbjct: 235 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 26/108 (24%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L    + E A A Y + L     + P                  N+    + LG  R
Sbjct: 258 GATLANGNQSEEAVAAYRRALE----LQPGYIR-----------SRYNLGISCINLGAHR 302

Query: 465 KSIEACNKVLDANPAHVKGLYRR-----------GMAYMALGEFEEAQ 501
           +++E   + L+                        +A   LG+ +   
Sbjct: 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 15/116 (12%), Positives = 30/116 (25%), Gaps = 30/116 (25%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    +  +  LA +   + L     + P +               + +A         R
Sbjct: 105 GTTQAENEQELLAISALRRCLE----LKPDNQT-----------ALMALAVSFTNESLQR 149

Query: 465 KSIEACNKVLDANPAHVK---------------GLYRRGMAYMALGEFEEAQRDFE 505
           ++ E     L   PA+                    R   + ++   F E +  F 
Sbjct: 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFL 205

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 56.2 bits (137), Expect = 7e-10
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  +K+G ++ A   Y+K L     ++P+  E              N+     K G+  
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALE----LDPRSAE-----------AWYNLGNAYYKQGDYD 52

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++IE   K L+ +P   +  Y  G AY   G+++EA   ++
Sbjct: 53  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 52.0 bits (126), Expect = 2e-08
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  +K+G ++ A   Y+K L     ++P+  E              N+     K G+  
Sbjct: 42  GNAYYKQGDYDEAIEYYQKALE----LDPRSAE-----------AWYNLGNAYYKQGDYD 86

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++IE   K L+ +P   +  Y  G AY   G+++EA   ++
Sbjct: 87  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 42.4 bits (101), Expect = 5e-05
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             N+     K G+  ++IE   K L+ +P   +  Y  G AY   G+++EA   ++
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 59

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 13/130 (10%), Positives = 28/130 (21%), Gaps = 18/130 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           ++   I   G         +       +       + P+                 +   
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTPEQVVA-----------IASHDG 420

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +   G    AL          +       +  
Sbjct: 421 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPD---PALAALT 477

Query: 516 PDATAALSKL 525
            D   AL+ L
Sbjct: 478 NDHLVALACL 487

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 8/116 (6%), Positives = 20/116 (17%), Gaps = 15/116 (12%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +       + P+                 +   
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHG----LTPEQVV-----------AIASHDG 148

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
               L   +  +    +     P  V  +   G    AL   +           + 
Sbjct: 149 GKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 10/128 (7%), Positives = 25/128 (19%), Gaps = 19/128 (14%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +       + PQ                 +   
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHG----LTPQQVVA-----------IASNGG 318

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +        AL   +           +     
Sbjct: 319 GKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT---- 374

Query: 516 PDATAALS 523
           P+   A++
Sbjct: 375 PEQVVAIA 382

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 7/110 (6%), Positives = 19/110 (17%), Gaps = 15/110 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +       + P+                 +   
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHG----LTPEQVV-----------AIASNGG 386

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
               L   ++ +    +     P  V  +        AL   +       
Sbjct: 387 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLC 436

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 10/110 (9%), Positives = 22/110 (20%), Gaps = 15/110 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           ++   I   G         +       +       + PQ                 +   
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTPQQVV-----------AIASNGG 216

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
               L   ++ +    +     P  V  +   G    AL   +       
Sbjct: 217 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 266

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 8/101 (7%), Positives = 18/101 (17%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G         +       +       + PQ                 +       L   +
Sbjct: 215 GGGKQALETVQRLLPVLCQAHG----LTPQQVV-----------AIASNGGGKQALETVQ 259

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           + +    +     P  V  +        AL   +       
Sbjct: 260 RLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLC 300

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 8/96 (8%), Positives = 19/96 (19%), Gaps = 12/96 (12%)

Query: 411 EGKFELAKAKYEKVLRDF-NHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469
                 A   +   L     ++ P+                 +       L   ++ +  
Sbjct: 46  GVTAVEAVHAWRNALTGAPLNLTPEQVVA-----------IASHDGGKQALETVQRLLPV 94

Query: 470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             +     P  V  +        AL   +       
Sbjct: 95  LCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 130

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           L+ +RI  G G+     P  D    VHY G L +    VF D+  +  G+P  F   E  
Sbjct: 39  LVFQRIARGSGK---RAPAIDDKCEVHYTGRLRD--GTVF-DSSRER-GKPTTFRPNE-- 89

Query: 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDW 386
           V +G+   ++LM  G+   +  P D AY        +P  + +++++EL+  +     
Sbjct: 90  VIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGGKG 147

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 10/117 (8%)

Query: 31  LMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILL 90
           L+   +  G G   P+  D+   H T R  DG + +S+R     +G P        +++ 
Sbjct: 39  LVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE----RGKPTTFRPN--EVIK 92

Query: 91  GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147
           G  E +  M +G+     +   + YG            P    L F++E+I      
Sbjct: 93  GWTEALQLMREGDRWRLFIPYDLAYGVTG----GGGMIPPYSPLEFDVELISIKDGG 145

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 55.2 bits (133), Expect = 1e-09
 Identities = 12/101 (11%), Positives = 27/101 (26%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  + K      A   +E V +      P+ +E              ++     +  +  
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQ----KEPEREE-----------AWRSLGLTQAENEKDG 68

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I A N     +P  +       +++        A     
Sbjct: 69  LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 109

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 16/98 (16%), Positives = 25/98 (25%), Gaps = 14/98 (14%)

Query: 428 FNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 487
           F   NP    E            +     +LKL    ++  A   V    P   +     
Sbjct: 8   FEANNPYMYHEN----------PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL 57

Query: 488 GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525
           G+      +   A         +D    P   A  + L
Sbjct: 58  GLTQAENEKDGLAIIALNHARMLD----PKDIAVHAAL 91

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 19/122 (15%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           L       G G   +       L+  HY G L N   KVF D+  +  G+PL F  G G 
Sbjct: 14  LAFCDKVVGYGPEAV----KGQLIKAHYVGKLEN--GKVF-DSSYNR-GKPLTFRIGVGE 65

Query: 329 VPEGFEMCV------RLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQWEIEL 377
           V +G++  +        ML G    +  PP+ AY             +P  + + ++IE 
Sbjct: 66  VIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEY 125

Query: 378 LG 379
           +G
Sbjct: 126 IG 127

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 18  EDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGI 77
           E       + P  L       G G      G  +  H   +  +G + +S+ +    +G 
Sbjct: 1   ETTSCEFSVSPSGLAFCDKVVGYGP-EAVKGQLIKAHYVGKLENGKVFDSSYN----RGK 55

Query: 78  PIRHVLGKSKILLGLLEGI------PTMLKGEVSMFKMKPQMHYGEDDC-PVAAPSTFPK 130
           P+   +G  +++ G  +GI      P ML G     ++ P++ YG+            P 
Sbjct: 56  PLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPP 115

Query: 131 DEELHFEIEMIDFA 144
              L F+IE I  A
Sbjct: 116 ASVLLFDIEYIGKA 129

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 14/115 (12%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
           G+       G G         +KA    K  +GK+  S    G+P  F  G  EV KG +
Sbjct: 13  GLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWD 71

Query: 213 MGI------GTMTREEKAVIYVTSQY------LTPSPLMPVVEGCEEVHFEVELV 255
            GI        M    K  + +  +               ++     + F++E +
Sbjct: 72  QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 22/119 (18%), Positives = 33/119 (27%), Gaps = 17/119 (14%)

Query: 405 GNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 463
           G  L     +   + A ++K L D     P                +LN   C  K G+ 
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALAD--PTYPTPYI-----------ANLNKGICSAKQGQF 129

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL 522
             +     + L A P             M  G+  +A   F+   K     E      L
Sbjct: 130 GLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK---KYQSRVEVLQADDL 185

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 16/102 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                +   +  A A  E  L+     +P+++              L  A     L    
Sbjct: 15  AMEYMRGQDYRQATASIEDALK----SDPKNEL-----------AWLVRAEIYQYLKVND 59

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMA-LGEFEEAQRDFE 505
           K+ E+  + L   P   +     G      L    E+   F+
Sbjct: 60  KAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFD 101

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 10/57 (17%), Positives = 23/57 (40%)

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +   +A   ++  + R++  +    L ++P +      R   Y  L   ++AQ  F 
Sbjct: 10  IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 10/110 (9%)

Query: 274 IRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGF 333
           I  G G  P         + V Y G L++    VF D+     G+P  F   +  V  G+
Sbjct: 113 INSGNGVKPGK----SDTVTVEYTGRLID--GTVF-DSTEKT-GKPATFQVSQ--VIPGW 162

Query: 334 EMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKP 383
              ++LM  G    +  P   AY        +     + ++I L+  +K 
Sbjct: 163 TEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKKS 212

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 11/112 (9%)

Query: 35  VMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLE 94
           V+  G G   P   D V    T R +DG + +ST       G P    + +  ++ G  E
Sbjct: 112 VINSGNGVK-PGKSDTVTVEYTGRLIDGTVFDSTEK----TGKPATFQVSQ--VIPGWTE 164

Query: 95  GIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA 146
            +  M  G      +   + YG              +E L F+I +I   K+
Sbjct: 165 ALQLMPAGSTWEIYVPSGLAYGPRS----VGGPIGPNETLIFKIHLISVKKS 212

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 58.7 bits (141), Expect = 3e-09
 Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 19/121 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            + L ++GK + A   Y++ +R    ++P   +            + N+   L ++ + +
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIR----ISPTFAD-----------AYSNMGNTLKEMQDVQ 94

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
            +++   + +  NPA           +   G   EA   +   +K+     PD   A   
Sbjct: 95  GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK----PDFPDAYCN 150

Query: 525 L 525
           L
Sbjct: 151 L 151

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 55.6 bits (133), Expect = 3e-08
 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 19/121 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            N   ++G  E A   Y K L     V P+               H N+A+ L + G+ +
Sbjct: 16  ANIKREQGNIEEAVRLYRKALE----VFPEFAA-----------AHSNLASVLQQQGKLQ 60

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           +++    + +  +P         G     + + + A + +   ++++    P    A S 
Sbjct: 61  EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN----PAFADAHSN 116

Query: 525 L 525
           L
Sbjct: 117 L 117

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 48.3 bits (114), Expect = 5e-06
 Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
             A+     GN L +    + A   Y + ++    +NP   +            H N+A+
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQ----INPAFAD-----------AHSNLAS 119

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                G   ++I +    L   P               + ++ +     +
Sbjct: 120 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 13/109 (11%)

Query: 274 IRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGF 333
           +  G G  P      +  + V Y G L +   K+F     D   QP  F     ++  G+
Sbjct: 124 LTPGTGPKPDA----NGRVEVRYVGRLPD--GKIF-----DQSTQPQWFRLD-SVIS-GW 170

Query: 334 EMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382
              ++ M  G    +  P D AY        +     + +EIEL+   +
Sbjct: 171 TSALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIAVSQ 219

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 14/111 (12%)

Query: 35  VMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLE 94
            + PG G   P    +V      R  DG I + +         P    L    ++ G   
Sbjct: 123 ELTPGTGPK-PDANGRVEVRYVGRLPDGKIFDQS-------TQPQWFRLD--SVISGWTS 172

Query: 95  GIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK 145
            +  M  G      +     YG +     A         L FEIE+I  ++
Sbjct: 173 ALQNMPTGAKWRLVIPSDQAYGAEG----AGDLIDPFTPLVFEIELIAVSQ 219

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 53.9 bits (131), Expect = 4e-09
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  +K+G ++ A   Y+K L     ++P + E              N+     K G+  
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALE----LDPNNAE-----------AWYNLGNAYYKQGDYD 60

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++IE   K L+ +P + +  Y  G AY   G+++EA   ++
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 44.3 bits (106), Expect = 8e-06
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 10/74 (13%)

Query: 432 NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491
           +P +  E             N+     K G+  ++IE   K L+ +P + +  Y  G AY
Sbjct: 4   DPGNSAEA----------WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 53

Query: 492 MALGEFEEAQRDFE 505
              G+++EA   ++
Sbjct: 54  YKQGDYDEAIEYYQ 67

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 43.5 bits (104), Expect = 1e-05
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 15/91 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  +K+G ++ A   Y+K L     ++P + E              N+     K G+  
Sbjct: 50  GNAYYKQGDYDEAIEYYQKALE----LDPNNAE-----------AWYNLGNAYYKQGDYD 94

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALG 495
           ++IE   K L+ +P + +     G A    G
Sbjct: 95  EAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 56.7 bits (136), Expect = 5e-09
 Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 18/120 (15%)

Query: 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR--K 465
           L K  + +LA+ + +K+       +               L  L  A   L  G  +   
Sbjct: 140 LLKLDRLDLARKELKKMQD----QDEDAT-----------LTQLATAWVSLAAGGEKLQD 184

Query: 466 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525
           +     ++ D     +  L  +   +MA G +E A+   +  +  D S  P+    L  L
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVL 243

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 54.8 bits (133), Expect = 8e-09
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 16/102 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G      G+ + A+A  ++ L     +    +            +   +A   L +G   
Sbjct: 125 GLVYALLGERDKAEASLKQALA----LEDTPE------------IRSALAELYLSMGRLD 168

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 506
           +++    K L+  P  +    R   A +  G+ EEA R   +
Sbjct: 169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 26/112 (23%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G +L+  G+++ A   +E+ L+     NPQD E               +A   LKLG   
Sbjct: 12  GVQLYALGRYDAALTLFERALK----ENPQDPE-----------ALYWLARTQLKLGLVN 56

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMAL-----------GEFEEAQRDFE 505
            ++E    ++   P ++ G      AY+AL           G  E+A    +
Sbjct: 57  PALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLK 108

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 51.8 bits (125), Expect = 9e-08
 Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 22/133 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----EGKVFVGKRNLLHLNVAACLLKL 460
                K G    A    + ++       P+         + +V     L+          
Sbjct: 46  ARTQLKLGLVNPALENGKTLVA----RTPRYLGGYMVLSEAYVA----LYRQAEDRERGK 97

Query: 461 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA 520
           G   +++         NP +     +RG+ Y  LGE ++A+   +  + ++         
Sbjct: 98  GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE----DTPEI 153

Query: 521 ------ALSKLKK 527
                     + +
Sbjct: 154 RSALAELYLSMGR 166

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 16/108 (14%)

Query: 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 457
               R   +R   +G  E A +  +   R    VNP+              LHL      
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAER----VNPRYAP-----------LHLQRGLVY 128

Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             LGE  K+  +  + L       +        Y+++G  +EA   + 
Sbjct: 129 ALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYA 175

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 12/56 (21%), Positives = 20/56 (35%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            L +   L  LG    ++    + L  NP   + LY      + LG    A  + +
Sbjct: 8   PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGK 63

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 12/94 (12%)

Query: 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471
           G    A   YEK +   + +  +D  E           +L + +    LGE RK+     
Sbjct: 4   GLEAQAVPYYEKAIA--SGLQGKDLAEC----------YLGLGSTFRTLGEYRKAEAVLA 51

Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             +   P H        M    LG +E+      
Sbjct: 52  NGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLL 85

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 16/90 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G+     G++  A+A     ++ F    P               L +  A  L  LG   
Sbjct: 34  GSTFRTLGEYRKAEAVLANGVKQF----PNHQA-----------LRVFYAMVLYNLGRYE 78

Query: 465 KSIEACNKVLDANPAHVK-GLYRRGMAYMA 493
           + +E   K++           Y++ + + A
Sbjct: 79  QGVELLLKIIAETSDDETIQSYKQAILFYA 108

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.0 bits (132), Expect = 4e-08
 Identities = 12/135 (8%), Positives = 27/135 (20%), Gaps = 19/135 (14%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D+   I             +       +       + P                  +   
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAHG----LTPDQVVA-----------IASHGG 302

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +        AL   +           +     
Sbjct: 303 GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLT---- 358

Query: 516 PDATAALSKLKKQRQ 530
           PD   A++     +Q
Sbjct: 359 PDQVVAIASNGGGKQ 373

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.0 bits (132), Expect = 5e-08
 Identities = 9/130 (6%), Positives = 23/130 (17%), Gaps = 19/130 (14%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +         P                  +   
Sbjct: 597 VQVVAIASNIGGKQALETVQRLLPVLCQAHGL----TPAQVV-----------AIASHDG 641

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +   G    AL   +           +     
Sbjct: 642 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---- 697

Query: 516 PDATAALSKL 525
            +   A++  
Sbjct: 698 QEQVVAIASN 707

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.3 bits (130), Expect = 9e-08
 Identities = 10/130 (7%), Positives = 24/130 (18%), Gaps = 19/130 (14%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +       + P                  +   
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHG----LTPAQVVA-----------IASHDG 234

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +        AL   +           +     
Sbjct: 235 GKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLT---- 290

Query: 516 PDATAALSKL 525
           PD   A++  
Sbjct: 291 PDQVVAIASH 300

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 13/128 (10%), Positives = 27/128 (21%), Gaps = 19/128 (14%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D+   I   G         +       +       + P                  +   
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHG----LTPDQVV-----------AIASHDG 336

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +   G    AL   +           +     
Sbjct: 337 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---- 392

Query: 516 PDATAALS 523
           PD   A++
Sbjct: 393 PDQVVAIA 400

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 8/110 (7%), Positives = 19/110 (17%), Gaps = 15/110 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D+   I   G         +       +       + P                  +   
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTPDQVVA-----------IASNGG 573

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
               L   ++ +    +        V  +        AL   +       
Sbjct: 574 GKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLC 623

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.2 bits (122), Expect = 8e-07
 Identities = 10/135 (7%), Positives = 25/135 (18%), Gaps = 19/135 (14%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +       + P                  +   
Sbjct: 631 AQVVAIASHDGGKQALETVQRLLPVLCQAHG----LTPDQVVA-----------IASNGG 675

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +        V  +        AL   +           +     
Sbjct: 676 GKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLT---- 731

Query: 516 PDATAALSKLKKQRQ 530
           PD   A++     +Q
Sbjct: 732 PDQVVAIASNGGGKQ 746

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 9/110 (8%), Positives = 21/110 (19%), Gaps = 15/110 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D+   I   G         +       +       +  +                 +   
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTQEQVVA-----------IASNNG 709

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
               L   ++ +    +     P  V  +   G    AL   +       
Sbjct: 710 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 759

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 11/130 (8%), Positives = 25/130 (19%), Gaps = 20/130 (15%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D+   I   G         +       +       + P                  +   
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTPDQVV-----------AIASNGG 404

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +        AL   +           +     
Sbjct: 405 -KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLT---- 459

Query: 516 PDATAALSKL 525
           P    A++  
Sbjct: 460 PAQVVAIASH 469

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 7/110 (6%), Positives = 17/110 (15%), Gaps = 15/110 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +                            +   
Sbjct: 461 AQVVAIASHDGGKQALETVQQLLPVLCQAHG-LTPDQVV--------------AIASNIG 505

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
               L   ++ +    +     P  V  +   G    AL   +       
Sbjct: 506 GKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 555

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 54.6 bits (131), Expect = 5e-08
 Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 23/138 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLH-LNVAACLLKLGEC 463
           G   +K+G    A   +   L                      +L  L   +        
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTH----CKNKV----SLQNLSMVLRQLQTDSGDEHSRHV 195

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMA--------LGEFEEAQRDFEMMMKVDKSSE 515
             S+      +  +    +  Y  G AY++            ++A   +    KVD+ + 
Sbjct: 196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255

Query: 516 PDATA------ALSKLKK 527
            +              + 
Sbjct: 256 SNPDLHLNRATLHKYEES 273

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 16/139 (11%), Positives = 41/139 (29%), Gaps = 26/139 (18%)

Query: 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEA 469
           + + E    + E+VL         + +             +     L    +   ++   
Sbjct: 81  QEEMEKTLQQMEEVLGS----AQVEAQ-----------ALMLKGKALNVTPDYSPEAEVL 125

Query: 470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA------ALS 523
            +K +   P  V+   + G  Y   G+   A   F   +        +  +       L 
Sbjct: 126 LSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC----KNKVSLQNLSMVLR 181

Query: 524 KLKKQRQVKLKVRLENSLK 542
           +L+     +    + +S++
Sbjct: 182 QLQTDSGDEHSRHVMDSVR 200

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.2 bits (104), Expect = 9e-05
 Identities = 16/146 (10%), Positives = 45/146 (30%), Gaps = 21/146 (14%)

Query: 406 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK 465
           N        + A + Y +  +  +     + +           LHLN A          +
Sbjct: 229 NTGQNPKISQQALSAYAQAEK-VDRKASSNPD-----------LHLNRATLHKYEESYGE 276

Query: 466 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA---------QRDFEMMMKVDKSSEP 516
           ++E  ++    +PA  +   R       L               ++   M+  +  +   
Sbjct: 277 ALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLG 336

Query: 517 DATAALSKLKKQRQVKLKVRLENSLK 542
                  +    +++ L+++  ++L+
Sbjct: 337 PCGDGRYQSASGQKMTLELKPLSTLQ 362

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 52.2 bits (125), Expect = 5e-08
 Identities = 12/117 (10%), Positives = 34/117 (29%), Gaps = 18/117 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-- 462
           G     +  +  +   Y + L+    +  ++ E           L+  +A  L       
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQ----LRGENAE-----------LYAALATVLYYQASQH 95

Query: 463 -CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDA 518
              ++    +K L  +   +  L            + +A   ++ +M ++       
Sbjct: 96  MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 7/69 (10%), Positives = 22/69 (31%), Gaps = 4/69 (5%)

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
                     ++A    + ANP + +     G  Y+   ++  +   +   +++      
Sbjct: 20  FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR----G 75

Query: 517 DATAALSKL 525
           +     + L
Sbjct: 76  ENAELYAAL 84

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 13/121 (10%), Positives = 35/121 (28%), Gaps = 20/121 (16%)

Query: 417 AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476
              + E +L         +             L   +     +  +   ++      LD 
Sbjct: 4   ITERLEAMLA----QGTDNML-----------LRFTLGKTYAEHEQFDAALPHLRAALDF 48

Query: 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDATAALSKLKKQRQV 531
           +P +       G      G+   A++ +E  +       D+    +    L +L ++  +
Sbjct: 49  DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDAL 108

Query: 532 K 532
           +
Sbjct: 109 E 109

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 13/109 (11%)

Query: 274 IRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGF 333
           +  GKGE P D       + V+YKG L++   K F D      G+PL F      V  G+
Sbjct: 128 VEAGKGEAPKD----SDTVVVNYKGTLID--GKEF-DNSYTR-GEPLSFRLDG--VIPGW 177

Query: 334 EMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFE 381
              ++ +  G    +  PP+ AY K       +P  + + +++ELL  +
Sbjct: 178 TEGLKNIKKGGKIKLVIPPELAYGK--AGVPGIPPNSTLVFDVELLDVK 224

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 12/108 (11%)

Query: 35  VMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLE 94
           V+  G G++ P D D V  +     +DG   +++ +    +G P+   L    ++ G  E
Sbjct: 127 VVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRLD--GVIPGWTE 179

Query: 95  GIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
           G+  + KG      + P++ YG+   P       P +  L F++E++D
Sbjct: 180 GLKNIKKGGKIKLVIPPELAYGKAGVP-----GIPPNSTLVFDVELLD 222

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 507
                +A   LK     +++    ++++ +P +V   Y  G  Y  L   ++A   +   
Sbjct: 8   FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67

Query: 508 MKVDKSSEPDATA------ALSKLKK 527
           ++V +  E           A  K + 
Sbjct: 68  IEVAR-EEGTQKDLSELQDAKLKAEG 92

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 9/100 (9%), Positives = 25/100 (25%), Gaps = 17/100 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                K      A A +E+++      +P                + ++     +L    
Sbjct: 14  AQEHLKHDNASRALALFEELVE----TDPDYVG-----------TYYHLGKLYERLDRTD 58

Query: 465 KSIEACNKVLDANPAHVKGLYRRGM--AYMALGEFEEAQR 502
            +I+   + ++             +  A +     E    
Sbjct: 59  DAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHH 98

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLY-RRGMAYMALGEFEEAQRDFEMMM 508
            L     L+  G+   +++A  + L   P      Y   G AY  LG++++A  +++  +
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62

Query: 509 KVDKSSEPDATAALSKLK 526
           +++    PD+ A  ++  
Sbjct: 63  ELN----PDSPALQARKM 76

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 463
           T   L  +G  E A    E+ L+      P   +E           +  +     KLG+ 
Sbjct: 6   TIKELINQGDIENALQALEEFLQ----TEPVGKDE----------AYYLMGNAYRKLGDW 51

Query: 464 RKSIEACNKVLDANP 478
           +K++      ++ NP
Sbjct: 52  QKALNNYQSAIELNP 66

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 19/133 (14%)

Query: 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI 467
             K GK++ A     ++   F  + P                   +          + + 
Sbjct: 12  ALKNGKYDDA----SQLFLSFLELYPNGVYTPNA--------LYWLGESYYATRNFQLAE 59

Query: 468 EACNKVLDANPAHVK---GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
                ++   P H K   GL + G++    G+  EAQ+  + +        P + AA   
Sbjct: 60  AQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT----QYPGSDAARVA 115

Query: 525 LKKQRQVKLKVRL 537
            ++ + ++L  +L
Sbjct: 116 QERLQSIRLGQQL 128

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 43.9 bits (105), Expect = 6e-06
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 15/91 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  +K+G ++ A   Y+K L     ++P + E              N+     K G+  
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALE----LDPNNAE-----------AWYNLGNAYYKQGDYD 60

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALG 495
           ++IE   K L+ +P + +     G A    G
Sbjct: 61  EAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 41.2 bits (98), Expect = 4e-05
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 10/74 (13%)

Query: 432 NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491
           +P +  E             N+     K G+  ++IE   K L+ +P + +  Y  G AY
Sbjct: 4   DPGNSAEA----------WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 53

Query: 492 MALGEFEEAQRDFE 505
              G+++EA   ++
Sbjct: 54  YKQGDYDEAIEYYQ 67

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 46.8 bits (111), Expect = 8e-06
 Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 15/139 (10%)

Query: 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 452
           G  D A        +L +      A   Y++    F      ++EE      +   L   
Sbjct: 110 GTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVF------ENEERLRQAAE---LIGK 160

Query: 453 VAACLLKLGECRKSIEACNKVLDAN------PAHVKGLYRRGMAYMALGEFEEAQRDFEM 506
            +  L++  +  ++  +  K           P   K    + +  +   ++  AQ+    
Sbjct: 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220

Query: 507 MMKVDKSSEPDATAALSKL 525
              +   S  +  AAL  L
Sbjct: 221 SYSIPGFSGSEDCAALEDL 239

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 12/109 (11%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE----GKVFVGKRNLLHLNVAACLLKL 460
                ++ + + A    +K L       P +       G  +  K   +       +   
Sbjct: 254 AKFYRRKDEPDKAIELLKKALE----YIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309

Query: 461 GEC----RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +       ++    K  +AN    +        +    ++EEA+  F+
Sbjct: 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQ 358

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 26/124 (20%)

Query: 409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL---GECRK 465
               + E AK  +EK L       P++ E               +A    +L      + 
Sbjct: 149 CGGNQNERAKVCFEKALE----KKPKNPE-----------FTSGLAIASYRLDNWPPSQN 193

Query: 466 SIEACNKVLDANPAHVKGLYRRGMAYMAL----GEFEEAQRDFEMMMKVDKSSEPDATAA 521
           +I+   + +  NP +        +    +     E  E ++  E  ++      P  T  
Sbjct: 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA----PGVTDV 249

Query: 522 LSKL 525
           L   
Sbjct: 250 LRSA 253

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 23/137 (16%)

Query: 294 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 353
           + Y+     +   +  D+ +    +PLEF  G   +  G E  V     GE   V   P+
Sbjct: 15  IEYEVRE--QGSSIVLDSNIS--KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPE 70

Query: 354 YAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGK 413
            AY  +   + +        E+    FE  +   G+S  G  ++ + I+           
Sbjct: 71  EAYGVY-ESSYL-------QEVPRDQFEGIELEKGMSVFGQTEDNQTIQAI--------- 113

Query: 414 FELAKAKYEKVLRDFNH 430
             +       V+ D+NH
Sbjct: 114 --IKDFSATHVMVDYNH 128

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 17/116 (14%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
               ++ + G RL K G      + +E  ++        +D +         +    +  
Sbjct: 7   ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLK-----TLSAIYS-QLGN 55

Query: 456 CLLKLGECRKSIEACNKVLDA------NPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
               L +  K++E  +  L             K     G     LG F+EA    +
Sbjct: 56  AYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQ 111

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 289 DSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALV 348
           +S + VH+   L  ++      TR  N+G+P  F  G+  + EG E  +  +  G+    
Sbjct: 28  NSAVLVHFTLKL--DDGTTAESTR--NNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTF 83

Query: 349 TCPPDYAY 356
           +  PD A+
Sbjct: 84  SLEPDAAF 91

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 16/104 (15%)

Query: 46  SDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVS 105
                V  H T++  DG   ESTR+       P    LG + +  GL + +  +  G+ +
Sbjct: 26  QSNSAVLVHFTLKLDDGTTAESTRNNGK----PALFRLGDASLSEGLEQHLLGLKVGDKT 81

Query: 106 MFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKII 149
            F ++P   +G                +L       +F  A   
Sbjct: 82  TFSLEPDAAFGV------------PSPDLIQYFSRREFMDAGEP 113

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 23/139 (16%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
              ++ + G RL K G      + +E  ++                     +    +   
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK----------TLSAIYS-QLGNA 52

Query: 457 LLKLGECRKSIEACNKVLDA------NPAHVKGLYRRGMAYMALGEFEEA----QRDFEM 506
              L +  K++E  +  L             K     G     LG F+EA    QR  ++
Sbjct: 53  YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 112

Query: 507 MMKVDKSSEPDATAALSKL 525
             +++   +     AL  L
Sbjct: 113 SRELND--KVGEARALYNL 129

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 7/105 (6%)

Query: 420 KYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL-KLGECRKSIEACNKVLDANP 478
           ++  V+          D+    F+     +   VAA  L    E  + +   N       
Sbjct: 150 RWTDVIDQVKSAGKWPDK----FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEA 205

Query: 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523
                 +   MA  + G    A    E +       EP   AAL 
Sbjct: 206 CARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAALK 248

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 289 DSLLCVHYKGMLLN---------EEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL 339
              + V Y G L +         E  K       D + +PLEF  GEG + +GFE  V  
Sbjct: 5   GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64

Query: 340 MLPGEIALVTCPPDYAY 356
           M  G+   V  P + AY
Sbjct: 65  MEVGDEKTVKIPAEKAY 81

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 46  SDGDQVAYHCTVRTLDGVIVESTRSEYGGK---------GIPIRHVLGKSKILLGLLEGI 96
             G ++      +   G + +++  E   +           P+  V+G+ +++ G  E +
Sbjct: 3   DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62

Query: 97  PTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKI 148
             M  G+    K+  +  YG             ++E L  +I    F +A  
Sbjct: 63  LDMEVGDEKTVKIPAEKAYGN------------RNEMLIQKIPRDAFKEADF 102

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 289 DSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALV 348
           D ++ + Y+     E+  +  ++       PL++  G G +  G E  +     G+   V
Sbjct: 6   DLVVSLAYQVRT--EDGVLVDESP---VSAPLDYLHGHGSLISGLETALEGHEVGDKFDV 60

Query: 349 TCPPDYAY 356
               + AY
Sbjct: 61  AVGANDAY 68

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 13/80 (16%), Positives = 29/80 (36%)

Query: 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
           L   + LL+ GE  +++     + D   +       +    +   +FE AQ     +   
Sbjct: 10  LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69

Query: 511 DKSSEPDATAALSKLKKQRQ 530
            + +   +  A  +L +Q  
Sbjct: 70  YQDNSYKSLIAKLELHQQAA 89

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 288 HDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIAL 347
            D ++ + Y+    +    +  ++       PL++  G G +  G E  +     G+   
Sbjct: 5   KDLVVSLAYQVRTEDGV--LVDESP---VSAPLDYLHGHGSLISGLETALEGHEVGDKFD 59

Query: 348 VTCPPDYAY 356
           V    + AY
Sbjct: 60  VAVGANDAY 68

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 61/418 (14%), Positives = 119/418 (28%), Gaps = 139/418 (33%)

Query: 253 ELVHLIQVRDMLGDGRLIKRRIRDGKGE-----FPMDCPLHD------SLLCVHYKGMLL 301
           E+ H+I  +D +     +   +   K E     F ++  L        S +    +   +
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLS-KQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSM 107

Query: 302 NEEKKVFYDTRVDNDGQP-------------------LEFSSGEGLVPEG---------- 332
                +    R+ ND Q                    LE    + ++ +G          
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 333 FEMC----VRLMLPGEI-----ALVTCPPD---------YAYDKFL-----RPANVPEGA 369
            ++C    V+  +  +I          P           Y  D          +N+    
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 370 H-IQWEIELLGFEKP-----------KDWTGL-SFD------------GIMDEAEKIRVT 404
           H IQ E+  L   KP           ++     +F+             + D       T
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD-FLSAATT 286

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD-EEGKVFVGKRNLLHLNVAACLLKLGEC 463
            +         L   + + +L  +    PQD   E        N   L++ A  ++ G  
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL----TTNPRRLSIIAESIRDGLA 342

Query: 464 R-------------KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
                           IE+   VL+  PA  + ++        L  F        +   +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKMFD------RLSVFPP---SAHIPTIL 391

Query: 511 -----DKSSEPDATAALSKLKK----QRQVK----------LKVRLENSLKGCLTRSL 549
                    + D    ++KL K    ++Q K          L+++++   +  L RS+
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 8e-04
 Identities = 56/452 (12%), Positives = 116/452 (25%), Gaps = 134/452 (29%)

Query: 176 KAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT- 234
           K W++        +    + + ++        P+ +      +   +K +  +   + + 
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV------LEMLQKLLYQIDPNWTSR 216

Query: 235 PSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGK--GEFPMDCP------ 286
                 +      +  + EL  L++ +    +  L+   +++ K    F + C       
Sbjct: 217 SDHSSNIKLRIHSI--QAELRRLLKSKP-YENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 287 ---LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE-FS-----SGEGLVPEGFEMCV 337
              + D L       + L+               +             + L P   E+  
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPD------EVKSLLLKYLDCRPQDL-PR--EVL- 323

Query: 338 RLMLPGEIALV-------TCPPDY----AYDKF----------LRPANV----------P 366
               P  ++++           D       DK           L PA            P
Sbjct: 324 -TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 367 EGAHIQWE-IELLGFEKPKDWTGLSFDGIMDEAEKIRVTG--NRLFKEGKFELAKAKYEK 423
             AHI    + L+       W  +    +M    K+       +  KE    +       
Sbjct: 383 PSAHIPTILLSLI-------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI----PSI 431

Query: 424 VLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 483
            L     +  + + E          LH             R  ++  N     +   +  
Sbjct: 432 YLE----LKVKLENEYA--------LH-------------RSIVDHYNIPKTFDSDDLIP 466

Query: 484 LYRRGMAYMALG----EFEEAQR---------DFEMM-MKVDKSSEP-----DATAALSK 524
            Y     Y  +G      E  +R         DF  +  K+   S            L +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Query: 525 LKKQRQ--VKLKVRLENSLKGCLTRSLGKFLK 554
           LK  +        + E      L  ++  FL 
Sbjct: 527 LKFYKPYICDNDPKYER-----LVNAILDFLP 553

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 22/135 (16%)

Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHL 451
           DG      ++ + G RL   G      A ++  ++       +D            +   
Sbjct: 42  DGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQ----AGTEDLR------TLSAIYS- 90

Query: 452 NVAACLLKLGECRKSIEACNKVL------DANPAHVKGLYRRGMAYMALGEFEEA----Q 501
            +      LG+  K+++     L      +      K     G     +G F+EA    +
Sbjct: 91  QLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCE 150

Query: 502 RDFEMMMKV-DKSSE 515
           R   +  ++ D+ SE
Sbjct: 151 RHLTLARQLGDRLSE 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	554
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	100.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.93
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.91
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.91
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.91
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.91
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.9
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.9
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.9
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.89
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.89
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.89
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.89
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.89
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.89
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.88
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.88
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.88
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.88
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.88
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.88
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.88
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.88
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.87
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.87
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.86
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.86
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.86
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.86
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.85
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.85
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.85
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.85
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.84
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.84
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.84
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.84
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.83
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.82
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.82
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.81
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.81
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.81
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.81
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.81
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.8
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.8
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.79
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.78
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.78
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.78
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.77
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.77
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.76
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.7
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.68
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.66
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.64
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.62
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.62
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.6
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.6
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.58
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.57
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.57
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.57
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.57
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.56
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.55
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.55
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.55
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.53
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.53
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.52
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.52
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.51
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.51
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.5
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.5
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.5
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.49
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.47
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.47
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.46
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.46
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.45
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.45
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.45
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.44
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.44
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.43
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.43
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.43
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.42
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.41
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.41
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.39
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.37
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.37
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.36
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.36
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.35
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.35
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.34
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.34
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.33
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.33
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.32
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.3
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.3
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.29
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.27
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.26
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.26
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.25
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.25
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.24
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.23
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.23
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.22
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.22
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.21
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.21
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.21
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.2
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.2
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.2
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.19
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.19
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.18
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.17
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.17
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.17
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.16
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.14
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.13
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.11
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.11
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.11
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.1
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.1
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.1
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.1
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.08
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.08
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.08
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.07
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.07
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.05
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.02
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.02
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.01
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.01
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.01
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.98
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.98
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.98
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.97
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.96
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.96
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.96
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.95
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.94
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.92
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.91
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.9
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.9
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.89
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.89
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.89
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	98.88
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.88
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.88
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.86
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.85
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.85
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.85
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.84
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.84
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.84
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.83
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.82
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.82
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.82
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.8
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.8
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.78
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.76
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.76
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.76
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.76
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.76
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.76
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.76
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.75
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.75
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.73
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.73
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.72
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.72
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.72
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.7
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.7
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.69
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.69
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.68
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.64
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.64
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.64
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.63
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.61
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.61
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.6
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.6
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.59
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.58
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.58
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.57
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.57
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.56
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.55
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.55
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.54
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.53
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.5
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.49
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.48
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.48
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.45
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.44
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.43
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.43
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.41
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.34
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.31
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.31
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.28
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.26
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.17
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.11
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.01
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.98
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.94
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.93
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.93
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.89
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.85
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.84
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.78
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	97.65
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.64
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.63
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.62
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.61
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	97.61
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.61
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.6
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.58
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.57
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.56
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.44
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.41
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.31
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.3
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.04
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.99
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.91
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.86
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.83
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.77
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.48
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.43
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	95.32
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.29
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.21
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	95.2
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.74
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.32
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.28
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.25
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.66
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	91.82
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	91.74
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.6
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	91.41
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	91.17
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	89.74
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	88.74
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	87.71
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	87.57
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	86.89
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	86.71
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	86.25
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	84.04
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	82.5
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	82.25
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	81.95
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	81.33
2wb7_A	526	PT26-6P; extra chromosomal elements, unknown funct	81.04
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	80.18

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=1.5e-64  Score=517.11  Aligned_cols=343  Identities=32%  Similarity=0.527  Sum_probs=212.2

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCC
Q 008780           23 RMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKG  102 (554)
Q Consensus        23 ~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G  102 (554)
                      ...++++||+|+++++|+|..+|+.||.|.+||++++.||++|++|+.    ++.|+.|.+|.+++++||+++|.+|++|
T Consensus         5 ~~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~~~lG~g~~i~g~e~~l~gm~~G   80 (356)
T 3jxv_A            5 ENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRD----RDDTFKFKLGQGQVIKGWDQGIKTMKKG   80 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECCCCEEEEccc----CCCcEEEEeCCCccchHHHHHHhcCCCC
Confidence            356789999999999999976699999999999999999999999997    6789999999999999999999999999


Q ss_pred             cEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeeccccccCCCCeEEEEEecCCCcCCCCCCceEEEEEEEE
Q 008780          103 EVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAK  182 (554)
Q Consensus       103 e~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~  182 (554)
                      +++.|+|||+++||..+.+    +.||++++|+|+|+|++|..+.++..|.++.++++++|.|+.+|..||.|+|||+++
T Consensus        81 e~~~~~ip~~~aYG~~g~~----~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~  156 (356)
T 3jxv_A           81 ENALFTIPPELAYGESGSP----PTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEAR  156 (356)
T ss_dssp             -----------------------------------------CCEEETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEE
T ss_pred             CEEEEEEChHHhCCCCCCC----CCcCCCCEEEEEeeEEeeecccccccCceeEEEEEecCcccCCCCCCCEEEEEEEEE
Confidence            9999999999999999875    689999999999999999988888899999999999999999999999999999999


Q ss_pred             eCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCC------CCCCcceEEEEEeeee
Q 008780          183 TGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP------VVEGCEEVHFEVELVH  256 (554)
Q Consensus       183 ~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~------~ip~~~~l~~~v~l~~  256 (554)
                      +.||++|+++.   ++.|.+|.+++++||+++|.+|++||+++++|||+++||+.+.+      .||++++|+|+|+|++
T Consensus       157 l~dgt~~~~~~---~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~  233 (356)
T 3jxv_A          157 LEDGTVVSKSE---GVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVS  233 (356)
T ss_dssp             ETTSCEEEEEE---EEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEE
T ss_pred             ECCCCEEeccC---CEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEE
Confidence            99999999873   79999999999999999999999999999999999999985333      5999999999999999


Q ss_pred             eeeeecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHH
Q 008780          257 LIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMC  336 (554)
Q Consensus       257 ~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~  336 (554)
                      |....|++.|++++++++++|.|..   .|..++.|+|||+|++.|  |++|+++... +++|+.|.+|.+++|+||+.+
T Consensus       234 ~~~v~dv~~d~~~~~~i~~~g~g~~---~~~~gd~V~v~y~g~l~d--G~~fd~~~~~-~~~p~~f~~G~g~~i~G~e~~  307 (356)
T 3jxv_A          234 WKTVTEIGDDKKILKKVLKEXEGYE---RPNEGAVVTVKITGKLQD--GTVFLKKGHD-EQEPFEFKTDEEAVIEGLDRA  307 (356)
T ss_dssp             EECEEEESTTCCEEEEEEECCBSSC---CCCTTCEEEEEEEEEESS--SCEEEEESCT-TSCCCEEETTTTSSCHHHHHH
T ss_pred             EecccccccccceeEEeeecccccC---CCCCCCEEEEEEEEEECC--CCEEeecccc-CCcCEEEEECCCccchHHHHH
Confidence            9999999999999999999999953   358999999999999977  9998666544 578999999999999999999


Q ss_pred             HhcCCcCcEEEEEeCCCCccccCCC--CCCCCCCCeEEEEEEEccccc
Q 008780          337 VRLMLPGEIALVTCPPDYAYDKFLR--PANVPEGAHIQWEIELLGFEK  382 (554)
Q Consensus       337 l~~M~~GE~~~~~i~~~~~yg~~g~--~~~ip~~~~l~~~ieL~~~~~  382 (554)
                      |.+|++||++.|+|||.++||..+.  ...||++++++|+|+|+++.+
T Consensus       308 l~gm~~Ge~~~v~ip~~~aYG~~~~~~~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          308 VLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             HTTCCBTCEEEEEECGGGTTTTSCEESSSEECTTCCEEEEEEEEEEEC
T ss_pred             HhCCCCCCEEEEEEChHHccCCCCcCCCCcCCcCCeEEEEEEEEEEEc
Confidence            9999999999999999999998874  356899999999999998864

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=7.9e-55  Score=463.03  Aligned_cols=382  Identities=29%  Similarity=0.467  Sum_probs=317.4

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEe
Q 008780          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (554)
Q Consensus       151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~  229 (554)
                      .+.|+.++++++|.|...|..||.|+|||++++.||++|+|+. .++|+.|.+|.++++|||+++|.+|++||+++|+||
T Consensus        29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~  108 (457)
T 1kt0_A           29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCK  108 (457)
T ss_dssp             ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEC
Confidence            5679999999999996669999999999999999999999986 468999999999999999999999999999999999


Q ss_pred             CCccCCCC-CCCCCCCcceEEEEEeeeeeeeeecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEE
Q 008780          230 SQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVF  308 (554)
Q Consensus       230 ~~~~~g~~-~~~~ip~~~~l~~~v~l~~~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~  308 (554)
                      |+++||.. .++.||++++++|+|+|++|... |++.|++++++++++|.|..   .|..|+.|+|||+|++ +  |++|
T Consensus       109 ~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~~-~~~~dg~~~k~i~~~g~~~~---~p~~g~~V~v~y~g~~-~--g~~f  181 (457)
T 1kt0_A          109 PEYAYGSAGSLPKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYS---NPNEGATVEIHLEGRC-G--GRMF  181 (457)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-ETTSSSSEEEEEEECCBCSC---CCCTTCEEEEEEEEEE-T--TEEE
T ss_pred             hHHhccccCCCCCCCCCCcEEEEEeeceeecc-cccCCcceEEEEEecCCCCC---CCCCCCEEEEEEEEEe-C--CeEE
Confidence            99999985 45789999999999999999764 78899999999999998873   4689999999999998 5  7887


Q ss_pred             EeccCCCCCCCeEEEcCCCC---chHHHHHHHhcCCcCcEEEEEeCCCCccccCCCCC-CCCCCCeEEEEEEEcccccCC
Q 008780          309 YDTRVDNDGQPLEFSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPK  384 (554)
Q Consensus       309 ~~t~~~~~~~~~~f~lG~~~---v~~g~~~~l~~M~~GE~~~~~i~~~~~yg~~g~~~-~ip~~~~l~~~ieL~~~~~~~  384 (554)
                       ++      +++.|.+|+|.   ++++|+.|+..|+.||++.+.++|.++|+..|... .||+++.+.|.++|.++....
T Consensus       182 -~~------~~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~  254 (457)
T 1kt0_A          182 -DC------RDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAK  254 (457)
T ss_dssp             -EE------EEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred             -ec------CceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCc
Confidence             43      25899999774   89999999999999999999999999999998653 689999999999999999999


Q ss_pred             CCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHH
Q 008780          385 DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR  464 (554)
Q Consensus       385 ~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~  464 (554)
                      ..+.+........+..++.+|+.+++.++|.+|+..|++|+.+........+++..........+|+|+|.||+++++|+
T Consensus       255 ~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~  334 (457)
T 1kt0_A          255 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT  334 (457)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             chhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            98999999999999999999999999999999999999999954332222345555667777899999999999999999


Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 008780          465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKG  543 (554)
Q Consensus       465 ~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~  543 (554)
                      +|+.+|++||+++|+++++|+++|.+|..+++|++|+.+|++|++++|++ ..+...+..+..++. ..++++  .+|++
T Consensus       335 ~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~--~~~~~  411 (457)
T 1kt0_A          335 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN-KAARLQISMCQKKAKEHNERDR--RIYAN  411 (457)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            99999999999999999999999999999999999999999999999998 678888888887777 555665  88999


Q ss_pred             hccccc
Q 008780          544 CLTRSL  549 (554)
Q Consensus       544 ~f~~~~  549 (554)
                      ||.+..
T Consensus       412 ~f~k~~  417 (457)
T 1kt0_A          412 MFKKFA  417 (457)
T ss_dssp             C-----
T ss_pred             HHhhhh
Confidence            998743

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=3.9e-43  Score=373.02  Aligned_cols=373  Identities=21%  Similarity=0.323  Sum_probs=276.3

Q ss_pred             CCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEE
Q 008780           27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM  106 (554)
Q Consensus        27 ~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~  106 (554)
                      +++||+|+++++|+|..+|+.||.|.+||++++.||++|++|+.    ++.|+.|.+|.+++++||+.+|.+|++|+++.
T Consensus        29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~----~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~  104 (457)
T 1kt0_A           29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATMKRGEICH  104 (457)
T ss_dssp             ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC----------CEEEETTSTTSCHHHHHHHTTCCTTCEEE
T ss_pred             CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCC----CCCCeEEEeCCcchhhHHHHHHhhCCCCCEEE
Confidence            78999999999999997799999999999999889999999986    67899999999999999999999999999999


Q ss_pred             EEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeeccccccCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCC
Q 008780          107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDG  186 (554)
Q Consensus       107 ~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g  186 (554)
                      |+|||+++||..|.+    +.||++++++|+|+|++|... ++..+.++.++++.+|.|+..|..|+.|+|||++++ +|
T Consensus       105 ~~i~~~~~yg~~g~~----~~i~~~~~l~~~v~l~~~~~~-~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~-~g  178 (457)
T 1kt0_A          105 LLCKPEYAYGSAGSL----PKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GG  178 (457)
T ss_dssp             EEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEECE-ETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE-TT
T ss_pred             EEEChHHhccccCCC----CCCCCCCcEEEEEeeceeecc-cccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEe-CC
Confidence            999999999999875    789999999999999999865 455788999999999999999999999999999998 89


Q ss_pred             cEEEecCCCccEEEEeCCC---CccchHHHHhccCCcCcEEEEEEeCCccCCCCCC--CCCCCcceEEEEEeeeeeeeee
Q 008780          187 KLILSHREGEPYFFTFGKS---EVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM--PVVEGCEEVHFEVELVHLIQVR  261 (554)
Q Consensus       187 ~~~~s~~~~~p~~~~~g~~---~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~--~~ip~~~~l~~~v~l~~~~~~~  261 (554)
                      ++|+++    ++.|.+|.|   +++++|+.||..|++||.+.|.++|.++|+..+.  ..||+++.+.|.+.+.++.+..
T Consensus       179 ~~f~~~----~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~  254 (457)
T 1kt0_A          179 RMFDCR----DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAK  254 (457)
T ss_dssp             EEEEEE----EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred             eEEecC----ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCc
Confidence            999973    689999977   4899999999999999999999999999998654  3689999999999999986543


Q ss_pred             cccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCC-CCchHHHHHHHhcC
Q 008780          262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE-GLVPEGFEMCVRLM  340 (554)
Q Consensus       262 d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~-~~v~~g~~~~l~~M  340 (554)
                      +...-..      .    ..    |.   ....      ....|..+             |..|+ ...+..++.++...
T Consensus       255 ~~~~~~~------~----~~----~~---~a~~------~~~~G~~~-------------~~~g~~~~A~~~y~~Al~~~  298 (457)
T 1kt0_A          255 ESWEMDT------K----EK----LE---QAAI------VKEKGTVY-------------FKGGKYMQAVIQYGKIVSWL  298 (457)
T ss_dssp             CGGGSCH------H----HH----HH---HHHH------HHHHHHHH-------------HHTTCHHHHHHHHHHHHHHH
T ss_pred             chhhcCH------H----HH----HH---HHHH------HHHHHHHH-------------HhCCCHHHHHHHHHHHHHHh
Confidence            3221000      0    00    00   0000      00001110             11221 12345555555432


Q ss_pred             CcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccccCCCCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHH
Q 008780          341 LPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAK  420 (554)
Q Consensus       341 ~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~  420 (554)
                                 |..              ..+         .  .+   ...+.....+..+.++|..+++.++|++|+..
T Consensus       299 -----------p~~--------------~~~---------~--~~---~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~  339 (457)
T 1kt0_A          299 -----------EME--------------YGL---------S--EK---ESKASESFLLAAFLNLAMCYLKLREYTKAVEC  339 (457)
T ss_dssp             -----------TTC--------------CSC---------C--HH---HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             -----------ccc--------------ccC---------C--hH---HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence                       110              000         0  00   00111223467888999999999999999999


Q ss_pred             HHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Q 008780          421 YEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA  500 (554)
Q Consensus       421 Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A  500 (554)
                      |++||+    ++|.+           ..+|+++|.||+.+++|++|+.++++|++++|++..++..++.++..++++++|
T Consensus       340 ~~~al~----~~p~~-----------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          340 CDKALG----LDSAN-----------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             HHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHh----cCCcc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999    88887           789999999999999999999999999999999999999999999999999988


Q ss_pred             HHH
Q 008780          501 QRD  503 (554)
Q Consensus       501 ~~~  503 (554)
                      .+.
T Consensus       405 ~~~  407 (457)
T 1kt0_A          405 DRR  407 (457)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=3.3e-41  Score=330.97  Aligned_cols=223  Identities=26%  Similarity=0.444  Sum_probs=204.8

Q ss_pred             CCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEE
Q 008780           27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM  106 (554)
Q Consensus        27 ~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~  106 (554)
                      +++||+|+++++|+|..+|+.||.|.+||++++.||++|+++++    ++.|+.|.+|.+++++||+.+|.+|++|+++.
T Consensus        49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~  124 (280)
T 1q1c_A           49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLD----RKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH  124 (280)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTT----SSSCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEeccc----CCCCEEEEECCcChhHHHHHHHhcCCCCCEEE
Confidence            68999999999999997799999999999999989999999986    66899999999999999999999999999999


Q ss_pred             EEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeecccccc-CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCC
Q 008780          107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIA-DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGD  185 (554)
Q Consensus       107 ~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~-~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~  185 (554)
                      |+|||+++||..+.+    +.||++++++|+|+|+++...+... .+.++.++++++|.|...|+.||.|+|||++++ |
T Consensus       125 v~ipp~~aYG~~g~~----~~Ip~~~~lvf~Vel~~i~~~~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-d  199 (280)
T 1q1c_A          125 ITCKPEYAYGSAGSP----PKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-K  199 (280)
T ss_dssp             EEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEECEECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-T
T ss_pred             EEECcHHhCCCcCcc----CCCCCCCcEEEEEEeeeecccccccccccceeEEeeecccccccccCCceEEEEEEEEe-C
Confidence            999999999998875    7899999999999999998643222 678999999999999778999999999999987 9


Q ss_pred             CcEEEecCCCccEEEEeCCCC---ccchHHHHhccCCcCcEEEEEEeCCccCCCCCC--CCCCCcceEEEEEeeeeeeee
Q 008780          186 GKLILSHREGEPYFFTFGKSE---VPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM--PVVEGCEEVHFEVELVHLIQV  260 (554)
Q Consensus       186 g~~~~s~~~~~p~~~~~g~~~---~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~--~~ip~~~~l~~~v~l~~~~~~  260 (554)
                      |++|++    .|+.|.+|.++   ++|||+++|.+|++||+++|+|||+++||..+.  ..||++++++|+|+|+++.+.
T Consensus       200 G~~fd~----~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~~~IP~~~~l~f~V~L~~i~~~  275 (280)
T 1q1c_A          200 DKLFDQ----RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKA  275 (280)
T ss_dssp             TEEEEE----EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECC
T ss_pred             CEEEec----CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCccCccCCCCeEEEEEEEEEEeCC
Confidence            999997    48999999998   599999999999999999999999999998653  259999999999999999866


Q ss_pred             ec
Q 008780          261 RD  262 (554)
Q Consensus       261 ~d  262 (554)
                      +|
T Consensus       276 ~~  277 (280)
T 1q1c_A          276 KE  277 (280)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=1.5e-38  Score=324.78  Aligned_cols=226  Identities=27%  Similarity=0.462  Sum_probs=208.6

Q ss_pred             cCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEE
Q 008780           26 IVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVS  105 (554)
Q Consensus        26 ~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~  105 (554)
                      ..+.++.++++++|.|..+|..||.|.+||++++.||++|+++.        ++.|.+|.+++++||+.+|.+|++||++
T Consensus       124 ~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt~~~~~~--------~~~f~~g~~~v~~gl~~~l~~m~~GE~~  195 (356)
T 3jxv_A          124 AKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSE--------GVEFTVKDGHLCPALAKAVKTMKKGEKV  195 (356)
T ss_dssp             TSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEEE--------EEEEEGGGCSSSHHHHHHHTTCCBTCEE
T ss_pred             ccCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCCEEeccC--------CEEEEeCCCCcchHHHHHHhhCCCCCEE
Confidence            35789999999999998779999999999999999999999764        6899999999999999999999999999


Q ss_pred             EEEEeCCCccCCCCCCCCCC-CCCCCCCceEEEEEEEeeeccccccCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeC
Q 008780          106 MFKMKPQMHYGEDDCPVAAP-STFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTG  184 (554)
Q Consensus       106 ~~~ip~~~~yg~~~~~~~~~-~~ip~~~~l~~~v~l~~~~~~~~~~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~  184 (554)
                      .|+|||+++||..|.+...+ ..||++++|+|+|+|++|....++..+.++.++++++|.|++.|+.||.|+|||++++.
T Consensus       196 ~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~  275 (356)
T 3jxv_A          196 LLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQ  275 (356)
T ss_dssp             EEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEES
T ss_pred             EEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccccccceeEEeeecccccCCCCCCCEEEEEEEEEEC
Confidence            99999999999998863222 26999999999999999998888888899999999999999999999999999999999


Q ss_pred             CCcEEEecC--CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCC---CCCCCCcceEEEEEeeeeeee
Q 008780          185 DGKLILSHR--EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPL---MPVVEGCEEVHFEVELVHLIQ  259 (554)
Q Consensus       185 ~g~~~~s~~--~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~---~~~ip~~~~l~~~v~l~~~~~  259 (554)
                      ||++|+++.  .++|+.|.+|.++++|||+++|.+|++||+++|+|||+++||+.+   ...||++++|+|+|+|+++.+
T Consensus       276 dG~~fd~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~~~~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          276 DGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             SSCEEEEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTSCEESSSEECTTCCEEEEEEEEEEEC
T ss_pred             CCCEEeeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEEEEEChHHccCCCCcCCCCcCCcCCeEEEEEEEEEEEc
Confidence            999999873  478999999999999999999999999999999999999999864   356899999999999999863

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=2.5e-38  Score=310.49  Aligned_cols=223  Identities=30%  Similarity=0.444  Sum_probs=201.8

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEe
Q 008780          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (554)
Q Consensus       151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~  229 (554)
                      .+.++.++++++|.|...|+.||.|+|||++++.||++|+++.. ++|++|.+|.++++|||+++|.+|++||+++|+||
T Consensus        49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ip  128 (280)
T 1q1c_A           49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK  128 (280)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEEC
Confidence            57899999999999966699999999999999999999999864 68999999999999999999999999999999999


Q ss_pred             CCccCCCC-CCCCCCCcceEEEEEeeeeeeeeeccc--CCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCc
Q 008780          230 SQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDML--GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKK  306 (554)
Q Consensus       230 ~~~~~g~~-~~~~ip~~~~l~~~v~l~~~~~~~d~~--~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~  306 (554)
                      |+++||.. .++.||++++|+|+|+|+++.. .|+.  .|++++++++++|.|..+   |..|+.|+|||.|++ +  |+
T Consensus       129 p~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~-~~~~~~~d~gl~~~il~~G~G~~~---~~~gd~V~i~y~g~~-d--G~  201 (280)
T 1q1c_A          129 PEYAYGSAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRGEGYAK---PNEGAIVEVALEGYY-K--DK  201 (280)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-EECCTTCSSSEEEEEEECCSCSCC---CCTTCEEEEEEEEEE-T--TE
T ss_pred             cHHhCCCcCccCCCCCCCcEEEEEEeeeecc-cccccccccceeEEeeeccccccc---ccCCceEEEEEEEEe-C--CE
Confidence            99999984 4568999999999999999976 4777  899999999999999842   478999999999997 4  88


Q ss_pred             EEEeccCCCCCCCeEEEcCCCC---chHHHHHHHhcCCcCcEEEEEeCCCCccccCCCCC-CCCCCCeEEEEEEEccccc
Q 008780          307 VFYDTRVDNDGQPLEFSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK  382 (554)
Q Consensus       307 ~~~~t~~~~~~~~~~f~lG~~~---v~~g~~~~l~~M~~GE~~~~~i~~~~~yg~~g~~~-~ip~~~~l~~~ieL~~~~~  382 (554)
                      +|++       +|+.|.+|.+.   +|+||+.+|.+|++||++.|+|||+|+||..+.+. .||++++++|+|+|+++..
T Consensus       202 ~fd~-------~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~~~IP~~~~l~f~V~L~~i~~  274 (280)
T 1q1c_A          202 LFDQ-------RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEK  274 (280)
T ss_dssp             EEEE-------EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEEC
T ss_pred             EEec-------CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCccCccCCCCeEEEEEEEEEEeC
Confidence            8743       37999999988   59999999999999999999999999999988665 5999999999999999999


Q ss_pred             CCCCC
Q 008780          383 PKDWT  387 (554)
Q Consensus       383 ~~~~~  387 (554)
                      +++.|
T Consensus       275 ~~~~W  279 (280)
T 1q1c_A          275 AKESW  279 (280)
T ss_dssp             CCC--
T ss_pred             CCCCC
Confidence            88766

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=100.00  E-value=9.9e-39  Score=325.76  Aligned_cols=273  Identities=30%  Similarity=0.443  Sum_probs=207.0

Q ss_pred             CCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCC-CchHHHHHHHhcCCcC
Q 008780          265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG-LVPEGFEMCVRLMLPG  343 (554)
Q Consensus       265 ~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~-~v~~g~~~~l~~M~~G  343 (554)
                      .+++|.|+++++|.|..|    ..|+.|+|||+|++.+ +|++|++|. . +++|+.|.+|.+ .+|+||+.+|.+|++|
T Consensus        47 ~~~~~~~~~~~~g~g~~~----~~gd~v~v~y~g~~~~-~g~~fd~~~-~-~~~~~~~~lg~~~~~i~g~e~~l~~m~~G  119 (338)
T 2if4_A           47 LDEKVSKQIIKEGHGSKP----SKYSTCFLHYRAWTKN-SQHKFEDTW-H-EQQPIELVLGKEKKELAGLAIGVASMKSG  119 (338)
T ss_dssp             EETTEEEEEEECCBSCCC----CTTCEEEEEEEEEETT-TCCCCEEHH-H-HTCCEEEETTSCCGGGHHHHHHHHHCCBT
T ss_pred             CCCCeEEEEEeCCCCCCC----CCCCEEEEEEEEEEcC-CCcEeeccc-C-CCCCeEEEcCCCCcccHHHHHHHhcCCCC
Confidence            356899999999999854    7899999999999875 488886554 2 468999999999 8999999999999999


Q ss_pred             cEEEEEeCCCCccccCCC--CCCCCCCCeEEEEEEEcccccCC---CCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHH
Q 008780          344 EIALVTCPPDYAYDKFLR--PANVPEGAHIQWEIELLGFEKPK---DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAK  418 (554)
Q Consensus       344 E~~~~~i~~~~~yg~~g~--~~~ip~~~~l~~~ieL~~~~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~  418 (554)
                      |++.|+||+.++||..+.  .+.||+++++.|+|+|.++....   +.+.++.++++..+..++.+|+.+++.++|.+|+
T Consensus       120 e~~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~  199 (338)
T 2if4_A          120 ERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAM  199 (338)
T ss_dssp             CEEEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHH
T ss_pred             CeEEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            999999999999999987  36799999999999999998754   3678899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCh------hHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008780          419 AKYEKVLRDFNHVNPQDD------EEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYM  492 (554)
Q Consensus       419 ~~Y~~al~~l~~~~p~~~------ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~  492 (554)
                      ..|++|+.    +.|.+.      ...+....+...+++|+|.||+++++|++|+.+|+++|+++|+++++|+++|.+|.
T Consensus       200 ~~y~~Al~----~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~  275 (338)
T 2if4_A          200 QQYEMAIA----YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA  275 (338)
T ss_dssp             HHHHHHHH----HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHH----HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999    444321      11222334455699999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccccc
Q 008780          493 ALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKGCLTRSLGK  551 (554)
Q Consensus       493 ~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f~~~~~~  551 (554)
                      .+|+|++|+.+|++|++++|++ ..++..|..+..+.+ ..++++  +.|++||...|..
T Consensus       276 ~~g~~~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~~~~~~~a~--~~~~~~l~~~p~~  332 (338)
T 2if4_A          276 ELGQMDSARDDFRKAQKYAPDD-KAIRRELRALAEQEKALYQKQK--EMYKGIFKGKDEG  332 (338)
T ss_dssp             TTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred             HcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHH--HHHHHhhCCCCCC
Confidence            9999999999999999999998 678888888866655 556666  8999999987653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=100.00  E-value=8.7e-35  Score=296.32  Aligned_cols=273  Identities=28%  Similarity=0.460  Sum_probs=237.2

Q ss_pred             eecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCC---chHHHHHH
Q 008780          260 VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL---VPEGFEMC  336 (554)
Q Consensus       260 ~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~---v~~g~~~~  336 (554)
                      ..|++.|++|+|+|+++|.|..   .|..++.|+|||+|++ +  |++|+++       |+.|.+|.|.   ++++|+.|
T Consensus        18 ~~~~~~~~~~~~~~~~~g~g~~---~p~~~~~v~v~y~g~~-~--g~~fd~~-------~~~f~lG~g~~~~~~~~~e~a   84 (336)
T 1p5q_A           18 GSHMEEDGGIIRRIQTRGEGYA---KPNEGAIVEVALEGYY-K--DKLFDQR-------ELRFEIGEGENLDLPYGLERA   84 (336)
T ss_dssp             ----CCTTSEEEEEEECCCCSC---CCCTTCEEEEEEEEEE-T--TEEEEEE-------EEEEETTCGGGGTCCHHHHHH
T ss_pred             ceeecCCCcEEEEEEeCCCCCC---CCCCCCeEEEEEEEEE-C--CEEEecC-------CeEEEeCCCCccccchHHHHH
Confidence            3678899999999999999973   3578999999999998 5  8888433       7999999887   58999999


Q ss_pred             HhcCCcCcEEEEEeCCCCccccCCCCC-CCCCCCeEEEEEEEcccccCCCCCCCChhhhhHHHHHHHHhhhhhhhcCCHH
Q 008780          337 VRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFE  415 (554)
Q Consensus       337 l~~M~~GE~~~~~i~~~~~yg~~g~~~-~ip~~~~l~~~ieL~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~  415 (554)
                      +..|++||++.+.|+|+++||..|... .||+++.+.|+++|.++......+.+..+.....+..+..+|+.+++.|+|+
T Consensus        85 l~~~~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~  164 (336)
T 1p5q_A           85 IQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYK  164 (336)
T ss_dssp             HTTCCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HhcCCCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence            999999999999999999999999765 5999999999999999999988888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 008780          416 LAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG  495 (554)
Q Consensus       416 ~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~  495 (554)
                      +|+..|++|+.........+.+...........+++|+|.||+++++|++|+.+|+++|+++|+++++|+++|.+|..+|
T Consensus       165 ~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  244 (336)
T 1p5q_A          165 QALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN  244 (336)
T ss_dssp             HHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            99999999999432221112344555667778999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccc
Q 008780          496 EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKGCLTRS  548 (554)
Q Consensus       496 ~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f~~~  548 (554)
                      ++++|+.+|++|++++|++ ..+...+..+...+. ..++++  ++|++||.+.
T Consensus       245 ~~~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~  295 (336)
T 1p5q_A          245 DFELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLAREK--KLYANMFERL  295 (336)
T ss_dssp             CHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh
Confidence            9999999999999999998 678888888887776 455555  7899998764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.93  E-value=3.8e-25  Score=225.20  Aligned_cols=275  Identities=15%  Similarity=0.154  Sum_probs=165.9

Q ss_pred             CCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCC-CcEEEecC-CCccEEEEeCCC-CccchHHHHhccCCcCcEEEEEE
Q 008780          152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGD-GKLILSHR-EGEPYFFTFGKS-EVPKGLEMGIGTMTREEKAVIYV  228 (554)
Q Consensus       152 d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~-g~~~~s~~-~~~p~~~~~g~~-~~~~gle~~l~~m~~Ge~~~~~v  228 (554)
                      +.++.++++++|.| ..|..||.|+|||++++.+ |++|+++. .++|+.|.+|.+ +++|||+++|.+|++||+++|+|
T Consensus        48 ~~~~~~~~~~~g~g-~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~~i  126 (338)
T 2if4_A           48 DEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHV  126 (338)
T ss_dssp             ETTEEEEEEECCBS-CCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEEEE
T ss_pred             CCCeEEEEEeCCCC-CCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEEEE
Confidence            45899999999999 6899999999999999885 99999875 478999999999 99999999999999999999999


Q ss_pred             eCCccCCCCCC---CCCCCcceEEEEEeeeeeeeeecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCC
Q 008780          229 TSQYLTPSPLM---PVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEK  305 (554)
Q Consensus       229 ~~~~~~g~~~~---~~ip~~~~l~~~v~l~~~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g  305 (554)
                      ||.++||..+.   +.||++++++|+|+|+++....+                +...   ......-.....-.+.. .|
T Consensus       127 ~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e----------------~~~~---~~~~~~~~~~~a~~~~~-~g  186 (338)
T 2if4_A          127 GWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE----------------GKAR---SDMTVEERIGAADRRKM-DG  186 (338)
T ss_dssp             CGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCC----------------CBTT---TBCCHHHHHHHHHHHHH-HH
T ss_pred             CHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCcc----------------cccc---ccCCHHHHHHHHHHHHH-HH
Confidence            99999998653   78999999999999999854211                0000   00000000000000000 00


Q ss_pred             cEEEeccCCCCCCCeEEEcCC-CCchHHHHHHHhcCCcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccccCC
Q 008780          306 KVFYDTRVDNDGQPLEFSSGE-GLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPK  384 (554)
Q Consensus       306 ~~~~~t~~~~~~~~~~f~lG~-~~v~~g~~~~l~~M~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~  384 (554)
                      ..+             |..|+ ...+..++.++.......          .|...                         
T Consensus       187 ~~~-------------~~~g~~~~A~~~y~~Al~~~p~~~----------~~~~~-------------------------  218 (338)
T 2if4_A          187 NSL-------------FKEEKLEEAMQQYEMAIAYMGDDF----------MFQLY-------------------------  218 (338)
T ss_dssp             HHT-------------CSSSCCHHHHHHHHHHHHHSCHHH----------HHTCC-------------------------
T ss_pred             HHH-------------HhcCCHHHHHHHHHHHHHHhccch----------hhhhc-------------------------
Confidence            000             11111 113344444443221000          00000                         


Q ss_pred             CCCCCChhhhhH--HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC
Q 008780          385 DWTGLSFDGIMD--EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE  462 (554)
Q Consensus       385 ~~~~~~~~~~~~--~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~  462 (554)
                          -...+...  ....+.++|..+++.++|++|+..|++|++    ++|.+           ..+++++|.||..+++
T Consensus       219 ----~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~a~~~~g~  279 (338)
T 2if4_A          219 ----GKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT----EEEKN-----------PKALFRRGKAKAELGQ  279 (338)
T ss_dssp             ----HHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTTTC
T ss_pred             ----ccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCC
Confidence                00011111  123678999999999999999999999999    78877           7899999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          463 CRKSIEACNKVLDANPAHVKGLYRRGMA-YMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       463 ~~~A~~~~~~al~~~p~~~ka~~~~g~a-~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      |++|+.+++++++++|++..++..++.+ ....+..+.|...|++++..+|++
T Consensus       280 ~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          280 MDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             HHHHHHHHHHTTC----------------------------------------
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            9999999999999999999999999998 445678889999999999999987

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.91  E-value=7.8e-24  Score=181.17  Aligned_cols=114  Identities=26%  Similarity=0.492  Sum_probs=102.5

Q ss_pred             CCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCC---CCCCccEEEecCCCccchhHHhhcCCCCCCc
Q 008780           27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEY---GGKGIPIRHVLGKSKILLGLLEGIPTMLKGE  103 (554)
Q Consensus        27 ~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~---~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge  103 (554)
                      .|+|++|+++++|+|...|+.||.|.+||++++.||++|++|+...   ...+.|+.|.+|.+++++||+++|.+|++|+
T Consensus         2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   81 (119)
T 3kz7_A            2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE   81 (119)
T ss_dssp             CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred             CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCC
Confidence            5899999999999998669999999999999999999999998410   0014799999999999999999999999999


Q ss_pred             EEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780          104 VSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus       104 ~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~  143 (554)
                      ++.|+|||+++||..+.+   +..|||+++|+|+|+|+++
T Consensus        82 ~~~v~ip~~~aYG~~g~~---~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           82 KARLEIEPEWAYGKKGQP---DAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEEEECGGGTTCTTCBG---GGTBCTTCCEEEEEEEEEE
T ss_pred             EEEEEECcHHhcCCCCCC---CCccCcCCeEEEEEEEEEe
Confidence            999999999999999875   1379999999999999987

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.91  E-value=7.7e-24  Score=183.25  Aligned_cols=116  Identities=30%  Similarity=0.497  Sum_probs=107.3

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (554)
Q Consensus        22 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~  101 (554)
                      .-....++|++|+++++|+|...|+.||.|.+||++++.||++|++++.    ++.|+.|.+|.+++++||+++|.+|++
T Consensus        12 di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~~i~G~e~~l~gm~~   87 (128)
T 3o5q_A           12 DITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATMKK   87 (128)
T ss_dssp             ECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTSSSSCHHHHHHHTTCCT
T ss_pred             eecccCCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEECCCCccHHHHHHHhcCCC
Confidence            3344578999999999999986699999999999999999999999986    678999999999999999999999999


Q ss_pred             CcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeec
Q 008780          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK  145 (554)
Q Consensus       102 Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  145 (554)
                      |+++.|+|||+++||..+.+    +.|||+++|+|+|+|++++.
T Consensus        88 Ge~~~v~ip~~~aYG~~g~~----~~Ip~~~~l~f~vel~~i~~  127 (128)
T 3o5q_A           88 GEICHLLCKPEYAYGSAGSL----PKIPSNATLFFEIELLDFKG  127 (128)
T ss_dssp             TCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEEC
T ss_pred             CCEEEEEEChHHcCCCCCCC----CCcCCCCEEEEEEEEEEecC
Confidence            99999999999999999875    68999999999999999863

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.91  E-value=1.1e-23  Score=178.50  Aligned_cols=112  Identities=25%  Similarity=0.513  Sum_probs=104.6

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcE
Q 008780           25 KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEV  104 (554)
Q Consensus        25 ~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~  104 (554)
                      ..+++|++|+++++|+|...|+.||.|.+||++++.||++|++++.    .+.|+.|.+|.+++++||+++|.+|++|++
T Consensus         2 ~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~----~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~   77 (113)
T 1yat_A            2 EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVD----RGSPFQCNIGVGQVIKGWDVGIPKLSVGEK   77 (113)
T ss_dssp             EECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTT----TTCCEEEETTSSSSCHHHHHHGGGCCTTCE
T ss_pred             CCCCCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCC----CCCcEEEEeCCCCccHHHHHHHhCCCCCCE
Confidence            4578999999999999987789999999999999989999999986    567999999999999999999999999999


Q ss_pred             EEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780          105 SMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (554)
Q Consensus       105 ~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~  144 (554)
                      +.|.|||+++||..+.+    +.||++++++|+|+|++++
T Consensus        78 ~~v~ip~~~ayG~~~~~----~~Ip~~~~l~f~vel~~ik  113 (113)
T 1yat_A           78 ARLTIPGPYAYGPRGFP----GLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             EEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEC
T ss_pred             EEEEECHHHCcCCCCCC----CCcCCCCeEEEEEEEEEeC
Confidence            99999999999998875    6799999999999999873

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.91  E-value=9.8e-24  Score=186.13  Aligned_cols=112  Identities=31%  Similarity=0.524  Sum_probs=105.7

Q ss_pred             cCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEE
Q 008780           26 IVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVS  105 (554)
Q Consensus        26 ~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~  105 (554)
                      ..++|++|+++++|+|..+|+.||.|.+||++++.||++|++++.    ++.|+.|.+|.+++++||+.+|.+|++|+++
T Consensus        32 ~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~  107 (144)
T 3o5e_A           32 KKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATMKKGEIC  107 (144)
T ss_dssp             SCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGG----GTSCEEEETTSSSSCHHHHHHHTTCCBTCEE
T ss_pred             cCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecc----cCCCeEEEeCCCcccHHHHHHHhCCCCCCEE
Confidence            369999999999999986699999999999999999999999987    6789999999999999999999999999999


Q ss_pred             EEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeec
Q 008780          106 MFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK  145 (554)
Q Consensus       106 ~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  145 (554)
                      .|+|||+++||..+.+    +.|||+++|+|+|+|++|+.
T Consensus       108 ~v~ipp~~aYG~~g~~----~~Ipp~~~L~f~VeL~~ikg  143 (144)
T 3o5e_A          108 HLLCKPEYAYGSAGSL----PKIPSNATLFFEIELLDFKG  143 (144)
T ss_dssp             EEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEChHHCcCCCCCC----CCcCCCCeEEEEEEEEEecC
Confidence            9999999999999875    78999999999999999863

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.90  E-value=1.4e-23  Score=183.05  Aligned_cols=114  Identities=28%  Similarity=0.553  Sum_probs=105.0

Q ss_pred             CCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEE
Q 008780           27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM  106 (554)
Q Consensus        27 ~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~  106 (554)
                      +++|++|+++++|+|...|+.||.|.+||++++.||++|++++.    ++.|+.|.+|.+++++||+++|.+|++|+++.
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~   87 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRD----RGDQFSFNLGRGNVIKGWDLGVATMTKGEVAE   87 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTTTSSCHHHHHHHTTCCBTCEEE
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCc----CCCCEEEEeCCCCccHHHHHHHhcCCCCCEEE
Confidence            78999999999999985599999999999999889999999986    56799999999999999999999999999999


Q ss_pred             EEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeecccc
Q 008780          107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKI  148 (554)
Q Consensus       107 ~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~  148 (554)
                      |+|||+++||..+.+    +.||++++++|+|+|.++...+.
T Consensus        88 v~ip~~~aYG~~g~~----~~Ip~~~~l~f~v~l~~i~~~~l  125 (135)
T 1r9h_A           88 FTIRSDYGYGDAGSP----PKIPGGATLIFEVELFEWSAEDI  125 (135)
T ss_dssp             EEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEEC---
T ss_pred             EEEChHHcCCCCCCC----CCcCcCCcEEEEEEEEEeecCCc
Confidence            999999999999875    78999999999999999986543

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.90  E-value=3.2e-23  Score=180.00  Aligned_cols=113  Identities=27%  Similarity=0.453  Sum_probs=105.1

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (554)
Q Consensus        22 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~  101 (554)
                      ....++++|++|+++++|+|.. |+.||.|.++|++++.||++|+++++    .+.|+.|.+|.+++++||+++|.+|++
T Consensus        21 ~~~~~~~~gl~~~~l~~G~G~~-~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~vi~G~eeaL~gmk~   95 (133)
T 2y78_A           21 MTVVTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKV   95 (133)
T ss_dssp             TCCEECTTSCEEEEEECCSSCB-CCTTSEEEEEEEEEETTSCEEEETTT----TTCCEEEETTSSSSCHHHHHHSTTCBT
T ss_pred             CCcEECCCCEEEEEEEcCCCCC-CCCCCEEEEEEEEEECCCCEEeccCc----CCCCEEEEeCCCChhHHHHHHHcCCCC
Confidence            3456789999999999999987 89999999999999989999999986    568999999999999999999999999


Q ss_pred             CcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus       102 Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~  143 (554)
                      |+++.|.|||+++||..+.+    +.|||+++++|+|+|++|
T Consensus        96 Ge~~~v~ip~~~aYG~~~~~----~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A           96 GGVRRLTIPPQLGYGARGAG----GVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             TCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEC
T ss_pred             CCEEEEEECcHHhCCCCCCC----CCCCCCCeEEEEEEEEEC
Confidence            99999999999999999875    679999999999999875

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.90  E-value=3.9e-23  Score=173.36  Aligned_cols=107  Identities=26%  Similarity=0.553  Sum_probs=100.4

Q ss_pred             CeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEE
Q 008780           30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM  109 (554)
Q Consensus        30 g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~i  109 (554)
                      ||+|+++++|+|...|+.||.|.+||++++.||++|++++.    .+.|+.|.+|.+++++||+++|.+|++|+++.|.|
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~----~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~i   76 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTI   76 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEE
Confidence            78999999999987799999999999999889999999986    55799999999999999999999999999999999


Q ss_pred             eCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780          110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (554)
Q Consensus       110 p~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~  144 (554)
                      ||+++||..+.+    +.||++++++|+|+|+++.
T Consensus        77 p~~~ayG~~~~~----~~Ip~~~~l~f~v~l~~v~  107 (107)
T 2ppn_A           77 SPDYAYGATGHP----GIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             CGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEC
T ss_pred             CHHHccCCCCCC----CCcCCCCeEEEEEEEEEeC
Confidence            999999998875    6799999999999999873

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.89  E-value=4.3e-23  Score=178.60  Aligned_cols=114  Identities=32%  Similarity=0.549  Sum_probs=105.4

Q ss_pred             cccccCCCCeEEE--EEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCC
Q 008780           22 RRMKIVPGSLMKA--VMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM   99 (554)
Q Consensus        22 ~~~~~~~~g~~~~--~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m   99 (554)
                      .....+++|++|+  ++++|+|...|+.||.|.++|++++.||++|++++.    .+.|+.|.+|.+++++||+++|.+|
T Consensus        15 ~~~~~~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~vi~G~e~aL~gm   90 (130)
T 2lgo_A           15 QTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRS----RGKPFQFTLGAGEVIKGWDQGVATM   90 (130)
T ss_dssp             SSCSSSSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTT----TTCCEEEETTSTTSCHHHHHHHHHS
T ss_pred             ccceeCCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCc----CCCCEEEEeCCCCccHHHHHHHhCC
Confidence            3455679999999  999999997789999999999999889999999986    5679999999999999999999999


Q ss_pred             CCCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780          100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus       100 ~~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~  143 (554)
                      ++|+++.|.|||+++||..+.+    +.|||+++++|+|+|+++
T Consensus        91 ~~Ge~~~v~ip~~~aYG~~~~~----~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           91 TLGEKALFTIPYQLAYGERGYP----PVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             CTTEEEEEEECTTTSTTTTCCS----TTSCSSCCEEEEEEEEEC
T ss_pred             CCCCEEEEEECcHHHCCCCCCC----CCcCCCCeEEEEEEEEEC
Confidence            9999999999999999998875    679999999999999875

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.89  E-value=4.7e-23  Score=185.21  Aligned_cols=115  Identities=23%  Similarity=0.398  Sum_probs=106.3

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (554)
Q Consensus        22 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~  101 (554)
                      ....++++||+|+++++|+|...|+.||.|.+||++++.||++|++++.    ++.|+.|.+  +++++||+++|.+|++
T Consensus        30 ~~~~~~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~dG~~fdss~~----~g~p~~f~l--g~vI~G~eeaL~gMk~  103 (167)
T 1jvw_A           30 PDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE----RGKPTTFRP--NEVIKGWTEALQLMRE  103 (167)
T ss_dssp             TTEEECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHH----HTSCEEECG--GGSCHHHHHHHTTCCT
T ss_pred             CCcEECCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECCCCEEeeccc----cCCCEEEEe--CchhHHHHHHHcCCCC
Confidence            4567899999999999999987689999999999999989999999986    567999999  5899999999999999


Q ss_pred             CcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeecc
Q 008780          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA  146 (554)
Q Consensus       102 Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~  146 (554)
                      |++++|+|||+++||..+.+    +.||||++|+|+|+|+++.+.
T Consensus       104 Ge~~~~~Ip~~laYG~~g~~----~~Ipp~s~LiF~VeL~~i~~~  144 (167)
T 1jvw_A          104 GDRWRLFIPYDLAYGVTGGG----GMIPPYSPLEFDVELISIKDG  144 (167)
T ss_dssp             TCEEEEEECGGGTTTTTCSS----SSSCTTCCEEEEEEEEEEGGG
T ss_pred             CCEEEEEECchhhCCCCCCC----CCcCCCCeEEEEEEEEEEEcC
Confidence            99999999999999999875    689999999999999999754

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.89  E-value=1.3e-22  Score=175.01  Aligned_cols=116  Identities=23%  Similarity=0.357  Sum_probs=104.5

Q ss_pred             cccccCCCCeEEEEEecCC--CCCCCCCCCEEEEEEEEEec-CCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCC
Q 008780           22 RRMKIVPGSLMKAVMRPGG--GDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT   98 (554)
Q Consensus        22 ~~~~~~~~g~~~~~~~~G~--g~~~~~~gd~V~~~y~~~~~-~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~   98 (554)
                      ...+++++|++|+++++|+  |.. |+.||.|.+||++++. ||++|++|+..  +.+.|+.|.+|.+++++||+++|.+
T Consensus         5 ~~~~~~~~gl~~~~l~~g~~~g~~-~~~gd~V~v~Y~g~~~~dG~~fdss~~~--~~~~p~~f~lG~~~~i~G~e~~l~g   81 (125)
T 4dip_A            5 MGALIPEPEVKIEVLQKPFICHRK-TKGGDLMLVHYEGYLEKDGSLFHSTHKH--NNGQPIWFTLGILEALKGWDQGLKG   81 (125)
T ss_dssp             CGGGCCCCCCEEEEEECCSCCSCC-CCTTCEEEEEEEEEETTTCCEEEEHHHH--TTTCCEEEETTSCSSCHHHHHHSTT
T ss_pred             CceEECCCCeEEEEEEcCCCCCCc-CCCCCEEEEEEEEEECCCCcEEEEcccC--CCCcCEEEEeCCCChhHHHHHHHhC
Confidence            4566789999999999998  444 8999999999999998 99999999841  0357999999999999999999999


Q ss_pred             CCCCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeec
Q 008780           99 MLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK  145 (554)
Q Consensus        99 m~~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  145 (554)
                      |++|+++.|.|||+++||..+.     +.|||+++|+|+|+|+++.+
T Consensus        82 m~~Ge~~~~~ip~~~aYG~~g~-----~~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           82 MCVGEKRKLIIPPALGYGKEGK-----GKIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             CCTTCEEEEEECGGGTTTTTCB-----TTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCCCEEEEEEChHHhcCCCCC-----CCCCCCCeEEEEEEEEEEEc
Confidence            9999999999999999999985     47999999999999999864

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.89  E-value=1.4e-22  Score=185.25  Aligned_cols=122  Identities=26%  Similarity=0.403  Sum_probs=109.6

Q ss_pred             ccccccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEec-CCcEEEecccCCCCCCccEEEecCCC-ccchhHHhhc
Q 008780           19 DDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGKS-KILLGLLEGI   96 (554)
Q Consensus        19 ~~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~-~g~~~~st~~~~~~~~~p~~~~~g~~-~~~~g~~~~l   96 (554)
                      +.....+++++|++|+++++|+|.. |+.||.|.+||++++. +|++|++|+.    .+.|+.|.+|.+ ++++||+.+|
T Consensus        39 ~~~~~~~~~~~gl~~~vl~~G~G~~-~~~Gd~V~v~Y~g~l~~dG~~fdss~~----~~~p~~f~lG~g~~vi~G~eeaL  113 (180)
T 2f4e_A           39 KVDSEAEVLDEKVSKQIIKEGHGSK-PSKYSTCFLHYRAWTKNSQHKFEDTWH----EQQPIELVLGKEKKELAGLAIGV  113 (180)
T ss_dssp             CCCSCCEEEETTEEEEEEECCBSCC-BCTTCEEEEEEEEEETTTCCEEEETTT----TTCCEEEETTSCCGGGHHHHHHH
T ss_pred             ccCCCcEECCCceEEEEEeCCCCCC-CCCCCEEEEEEEEEECCCCcEEeccCc----cCCCEEEEeCCCCchhHHHHHHH
Confidence            3445577889999999999999986 9999999999999987 5999999986    678999999999 9999999999


Q ss_pred             CCCCCCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeeccc
Q 008780           97 PTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK  147 (554)
Q Consensus        97 ~~m~~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~  147 (554)
                      .+|++|+++.|+|||+++||..+.+.  ++.||++++|+|+|+|+++..+.
T Consensus       114 ~gMk~Ge~~~v~iPp~~aYG~~g~~~--~~~Ip~~s~l~F~VeL~~v~~~~  162 (180)
T 2f4e_A          114 ASMKSGERALVHVGWELAYGKEGNFS--FPNVPPMADLLYEVEVIGFDETK  162 (180)
T ss_dssp             TTCCBTCEEEEEECGGGTTTTTCBSS--SSCBCTTCCEEEEEEEEEESCBC
T ss_pred             hCCCCCCEEEEEECchHhCCcCCccc--CCCcCCCCeEEEEEEEEEEecCc
Confidence            99999999999999999999988621  25799999999999999997654

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.89  E-value=2.6e-23  Score=181.15  Aligned_cols=115  Identities=27%  Similarity=0.404  Sum_probs=99.2

Q ss_pred             ccccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEec-CCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCC
Q 008780           21 KRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM   99 (554)
Q Consensus        21 ~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~-~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m   99 (554)
                      +....++++||+|+++++|+|.. ++.||.|.+||++++. +|++|++++.    .+.|+.|.+|.+++++||+++|.+|
T Consensus        18 ~~~~v~~~~gl~~~vl~~G~g~~-~~~gd~V~v~Y~g~l~~~G~~fdss~~----~~~p~~f~lG~g~~i~G~e~aL~gm   92 (134)
T 3b7x_A           18 RMLDISGDRGVLKDVIREGAGDL-VAPDASVLVKYSGYLEHMDRPFDSNYF----RKTPRLMKLGEDITLWGMELGLLSM   92 (134)
T ss_dssp             TCEESSSSSSEEEEEEECCEEEE-CCTTCEEEEEEEEECTTCSSCSEEC-----------CEEC-CCCCCHHHHHHHHTC
T ss_pred             ccceeeCCCCEEEEEEEcCCCCC-CCCCCEEEEEEEEEECCCCeEEEecCC----CCCCEEEEcCCcchhHHHHHHHhCC
Confidence            34455689999999999999997 7899999999999987 6999999986    5689999999999999999999999


Q ss_pred             CCCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780          100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (554)
Q Consensus       100 ~~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~  144 (554)
                      ++|+++.|+|||+++||..+.+    +.|||+++++|+|+|+++.
T Consensus        93 ~~Ge~~~v~ip~~~aYG~~~~~----~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           93 RRGELARFLFKPNYAYGTLGCP----PLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             EETCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEC
T ss_pred             CCCCEEEEEECHHHCcCCCCCC----CCcCcCCeEEEEEEEEEEe
Confidence            9999999999999999999875    6799999999999999985

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.89  E-value=1.2e-21  Score=199.10  Aligned_cols=267  Identities=15%  Similarity=0.185  Sum_probs=199.9

Q ss_pred             ccCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCC---ccchHHHHhccCCcCcEEE
Q 008780          149 IADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSE---VPKGLEMGIGTMTREEKAV  225 (554)
Q Consensus       149 ~~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~---~~~gle~~l~~m~~Ge~~~  225 (554)
                      +..+.++.++++++|.|...|..|+.|+|||++++ +|++|+++    |+.|.+|.|.   ++++|+++|.+|++||++.
T Consensus        21 ~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~----~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~   95 (336)
T 1p5q_A           21 MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSI   95 (336)
T ss_dssp             -CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEE
T ss_pred             ecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC----CeEEEeCCCCccccchHHHHHHhcCCCCCeEE
Confidence            34678999999999999778999999999999998 99999986    8999999987   5899999999999999999


Q ss_pred             EEEeCCccCCCCCCC--CCCCcceEEEEEeeeeeeeeecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecC
Q 008780          226 IYVTSQYLTPSPLMP--VVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNE  303 (554)
Q Consensus       226 ~~v~~~~~~g~~~~~--~ip~~~~l~~~v~l~~~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~  303 (554)
                      +.++|+++||..+.+  .||+++.+.|+++|.++....+......      .    ..|    .   ....++     + 
T Consensus        96 l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~------~----~~p----~---~a~~~~-----~-  152 (336)
T 1p5q_A           96 VYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNS------E----EKL----E---QSTIVK-----E-  152 (336)
T ss_dssp             EEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCH------H----HHH----H---HHHHHH-----H-
T ss_pred             EEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCH------H----HHH----H---HHHHHH-----H-
Confidence            999999999986554  5899999999999999964433221000      0    000    0   000000     0 


Q ss_pred             CCcEEEeccCCCCCCCeEEEcCC-CCchHHHHHHHhcCCcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEccccc
Q 008780          304 EKKVFYDTRVDNDGQPLEFSSGE-GLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK  382 (554)
Q Consensus       304 ~g~~~~~t~~~~~~~~~~f~lG~-~~v~~g~~~~l~~M~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~  382 (554)
                      -|...             +..|+ ...+..++.++....           ..              ..+         . 
T Consensus       153 ~g~~~-------------~~~g~~~~A~~~y~~Al~~~p-----------~~--------------~~~---------~-  184 (336)
T 1p5q_A          153 RGTVY-------------FKEGKYKQALLQYKKIVSWLE-----------YE--------------SSF---------S-  184 (336)
T ss_dssp             HHHHH-------------HHHTCHHHHHHHHHHHHHHTT-----------TC--------------CCC---------C-
T ss_pred             HHHHH-------------HHCCCHHHHHHHHHHHHHHhh-----------cc--------------ccC---------C-
Confidence            01100             11222 123455555554321           10              000         0 


Q ss_pred             CCCCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC
Q 008780          383 PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE  462 (554)
Q Consensus       383 ~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~  462 (554)
                       .   ..........+..+.++|..+++.|+|++|+..|++|++    ++|.+           ..+++++|.||..+++
T Consensus       185 -~---~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~  245 (336)
T 1p5q_A          185 -N---EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE----LDSNN-----------EKGLSRRGEAHLAVND  245 (336)
T ss_dssp             -S---HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTC
T ss_pred             -h---HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHCCC
Confidence             0   000111223467889999999999999999999999999    78887           7899999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 008780          463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA-QRDFEMMMKV  510 (554)
Q Consensus       463 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A-~~~~~~al~l  510 (554)
                      |++|+.+++++++++|++..+++.++.++..++++++| ...|++++..
T Consensus       246 ~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          246 FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999 4567776654

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.88  E-value=2.8e-22  Score=173.82  Aligned_cols=117  Identities=21%  Similarity=0.518  Sum_probs=102.7

Q ss_pred             ccccccCCCCeE-EEEEecC-CCC-CCCCCCCEEEEEEEEEe-cCCcEEEecccCCCCCCccEEEecCCCccchhHHhhc
Q 008780           21 KRRMKIVPGSLM-KAVMRPG-GGD-STPSDGDQVAYHCTVRT-LDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGI   96 (554)
Q Consensus        21 ~~~~~~~~~g~~-~~~~~~G-~g~-~~~~~gd~V~~~y~~~~-~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l   96 (554)
                      +....++++|+. ++++++| .|. ..|+.||.|.+||++++ .||++|++++.    .+.|+.|.+|.+++++||+++|
T Consensus         7 ~~~~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~----~~~p~~f~lG~g~~i~g~e~~l   82 (129)
T 2vn1_A            7 FEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD----RNVPFKFHLEQGEVIKGWDICV   82 (129)
T ss_dssp             CEEEECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGG----TTCCEEEETTSSSSCHHHHHHH
T ss_pred             cCCcEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCC----CCccEEEEeCCCCcCHHHHHHH
Confidence            345566677655 4799977 552 34899999999999998 79999999986    5689999999999999999999


Q ss_pred             CCCCCCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeec
Q 008780           97 PTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK  145 (554)
Q Consensus        97 ~~m~~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  145 (554)
                      .+|++|+++.|+|||+++||..+.+    +.|||+++++|+|+|+++..
T Consensus        83 ~gm~~Ge~~~v~ip~~~aYG~~~~~----~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           83 SSMRKNEKCLVRIESMYGYGDEGCG----ESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             TTCCTTCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEEC
T ss_pred             hCCCCCCEEEEEEChHHcCCCCCCC----CCcCCCCeEEEEEEEEEEec
Confidence            9999999999999999999998875    67999999999999999975

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.88  E-value=5.2e-22  Score=176.39  Aligned_cols=115  Identities=22%  Similarity=0.352  Sum_probs=102.7

Q ss_pred             ccccccCCCCe-EEEEEecCCCC-CCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCC
Q 008780           21 KRRMKIVPGSL-MKAVMRPGGGD-STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT   98 (554)
Q Consensus        21 ~~~~~~~~~g~-~~~~~~~G~g~-~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~   98 (554)
                      ++...++++|+ +|+++++|+|. ..|+.||.|.+||++++.||++|+++        .|+.|.+|.+++++||+++|.+
T Consensus        34 ~~~~~~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds~--------~p~~f~lG~g~vi~G~eeaL~g  105 (157)
T 2jwx_A           34 EEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE--------PELVFTLGDCDVIQALDLSVPL  105 (157)
T ss_dssp             CSCEESSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEEE--------EEEEEETTTTSSCHHHHHHTTT
T ss_pred             cccceECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeecC--------CCEEEEeCCCChhHHHHHHHcC
Confidence            33445678887 89999999997 34899999999999999999999963        4899999999999999999999


Q ss_pred             CCCCcEEEEEEeCCCccCCCC-CCCCCCCCCCCCCceEEEEEEEeeeccc
Q 008780           99 MLKGEVSMFKMKPQMHYGEDD-CPVAAPSTFPKDEELHFEIEMIDFAKAK  147 (554)
Q Consensus        99 m~~Ge~~~~~ip~~~~yg~~~-~~~~~~~~ip~~~~l~~~v~l~~~~~~~  147 (554)
                      |++|++++|+||++++||..+ .+    +.|||+++|+|+|+|+++....
T Consensus       106 Mk~Ge~~~v~IP~~~aYG~~g~~~----~~IPp~stLiF~VeL~~i~~~~  151 (157)
T 2jwx_A          106 MDVGETAMVTADSKYCYGPQGSRS----PYIPPHAALCLEVTLKTAVDLE  151 (157)
T ss_dssp             SCTTCEEEEEECGGGTTTTTCCSS----SCCCTTCCEEEEEEEEEEEECS
T ss_pred             CCCCCEEEEEECchhcCCcccccC----CCcCCCCeEEEEEEEEEEEccc
Confidence            999999999999999999988 43    6799999999999999997643

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.88  E-value=8.5e-23  Score=176.91  Aligned_cols=119  Identities=22%  Similarity=0.405  Sum_probs=105.3

Q ss_pred             cccccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCC-
Q 008780           20 DKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT-   98 (554)
Q Consensus        20 ~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~-   98 (554)
                      ......++++||+|+++++|+|.. |+.||.|.+||++++.||++|++++.    ++.|+.|.+|.+++++||+++|.+ 
T Consensus         3 ~~~~~~~~~~Gl~~~~l~~G~G~~-~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~~~~i~G~~~~L~G~   77 (129)
T 1u79_A            3 TSCEFSVSPSGLAFCDKVVGYGPE-AVKGQLIKAHYVGKLENGKVFDSSYN----RGKPLTFRIGVGEVIKGWDQGILGS   77 (129)
T ss_dssp             --CCCEECTTSCEEEEEECCSSCB-CCTTCEEEEEEEEECTTSCEEEEHHH----HTSCEEEETTSSSSCHHHHHHHHCB
T ss_pred             CCCccEECCCCeEEEEEEcCCCCC-CCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEeCCCCccHHHHHHhccc
Confidence            345667789999999999999987 89999999999999889999999986    567999999999999999999998 


Q ss_pred             -----CCCCcEEEEEEeCCCccCCCCCCCC-CCCCCCCCCceEEEEEEEee
Q 008780           99 -----MLKGEVSMFKMKPQMHYGEDDCPVA-APSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus        99 -----m~~Ge~~~~~ip~~~~yg~~~~~~~-~~~~ip~~~~l~~~v~l~~~  143 (554)
                           |++|++++|.|||+++||+.+.+.. .++.||||++++|+|+|+++
T Consensus        78 ~~~~~m~~Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           78 DGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             TTBCCCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             ccccccCCCCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence                 9999999999999999999875210 01469999999999999987

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.88  E-value=2.1e-22  Score=187.58  Aligned_cols=109  Identities=21%  Similarity=0.353  Sum_probs=101.3

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (554)
Q Consensus        22 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~  101 (554)
                      ...+++++|++|+++++|+|.. |+.||.|.+||++++.||++|++| .      .|+.|.+|  ++|+||+++|.+|++
T Consensus       110 ~gv~~~~sGl~y~vl~~G~G~~-p~~gd~V~V~Y~g~l~dG~vfDss-~------~P~~f~lG--~vI~G~eeaL~gMk~  179 (219)
T 3oe2_A          110 PGVKELADGILMTELTPGTGPK-PDANGRVEVRYVGRLPDGKIFDQS-T------QPQWFRLD--SVISGWTSALQNMPT  179 (219)
T ss_dssp             TTCEECGGGCEEEEEECCCSCC-CCTTSEEEEEEEEECTTSCEEEEC-S------SCEEEEGG--GSCHHHHHHHTTCCT
T ss_pred             CCcEECCCCeEEEEEecCCCcc-CCCCCEEEEEEEEEECCCCEeecc-C------CcEEEEec--chhHHHHHHHhCCCC
Confidence            3466789999999999999987 999999999999999999999988 3      59999996  899999999999999


Q ss_pred             CcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (554)
Q Consensus       102 Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~  144 (554)
                      |++++|+|||+++||..+.+    +.|||+++|+|+|+|++|+
T Consensus       180 Gek~~v~IPp~lAYG~~g~~----~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          180 GAKWRLVIPSDQAYGAEGAG----DLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             TCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred             CCEEEEEECchhcCCCCCCC----CCCCCCCeEEEEEEEEEEe
Confidence            99999999999999999875    6799999999999999985

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.88  E-value=6.7e-23  Score=182.40  Aligned_cols=119  Identities=20%  Similarity=0.314  Sum_probs=99.3

Q ss_pred             ccCCCCeEEEEEecCCCCC-CCCCCCEEEEEEEEEecC--CcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780           25 KIVPGSLMKAVMRPGGGDS-TPSDGDQVAYHCTVRTLD--GVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (554)
Q Consensus        25 ~~~~~g~~~~~~~~G~g~~-~~~~gd~V~~~y~~~~~~--g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~  101 (554)
                      +++.+||+|+++++|+|.. .+..||.|.+||++++.|  |++||||++    ++.|+.|.+|.+++|+||+.||.+|++
T Consensus         6 ~~~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~----rg~P~~f~lG~g~vI~Gwd~gl~~M~~   81 (165)
T 2lkn_A            6 RLREDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRA----RGKPMELIIGKKFKLPVWETIVCTMRE   81 (165)
T ss_dssp             HHHTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTT----TTCCEEEESSSSCSCSHHHHHHTTCCT
T ss_pred             cccCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEeccc----CCCCEEEEecCCCccHHHHHHHhcCcc
Confidence            5679999999999999985 246899999999999854  999999998    889999999999999999999999999


Q ss_pred             CcEEEEEEeCCCccCCC-----------CCCCCC-------------------C---CCCCCCCceEEEEEEEeeeccc
Q 008780          102 GEVSMFKMKPQMHYGED-----------DCPVAA-------------------P---STFPKDEELHFEIEMIDFAKAK  147 (554)
Q Consensus       102 Ge~~~~~ip~~~~yg~~-----------~~~~~~-------------------~---~~ip~~~~l~~~v~l~~~~~~~  147 (554)
                      ||+++|+|||+++||..           +..+..                   .   .-|+++++|+|+|||++|..+.
T Consensus        82 Ge~~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~  160 (165)
T 2lkn_A           82 GEIAQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPG  160 (165)
T ss_dssp             TCEEEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTT
T ss_pred             CceEEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCc
Confidence            99999999999999920           100000                   0   0134457899999999998765

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.88  E-value=3e-22  Score=186.94  Aligned_cols=113  Identities=26%  Similarity=0.439  Sum_probs=104.7

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (554)
Q Consensus        22 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~  101 (554)
                      ....++++|++|+++++|+|.. |+.||.|.+||++++.||++|++++.    ++.|+.|.+  +++++||+++|.+|++
T Consensus        99 ~~v~~~~sGl~y~vl~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~----~g~p~~f~l--g~vI~G~eeaL~gMk~  171 (213)
T 1fd9_A           99 PGVVVLPSGLQYKVINSGNGVK-PGKSDTVTVEYTGRLIDGTVFDSTEK----TGKPATFQV--SQVIPGWTEALQLMPA  171 (213)
T ss_dssp             TTEEECTTSCEEEEEECCCSCC-CCTTCEEEEEEEEEETTSCEEEEHHH----HCSCEEEEG--GGSCHHHHHHHTTCCT
T ss_pred             CCcEECCCccEEEEEecCCCcc-CCCCCEEEEEEEEEECCCCEEeeccc----cCCCEEEEc--CchhhHHHHHHcCCCC
Confidence            3467789999999999999987 99999999999999999999999986    568999999  5899999999999999


Q ss_pred             CcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeec
Q 008780          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK  145 (554)
Q Consensus       102 Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  145 (554)
                      |++++|+|||+++||..+.+    +.|||+++++|+|+|+++.+
T Consensus       172 Gek~~v~IP~~laYG~~g~~----~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          172 GSTWEIYVPSGLAYGPRSVG----GPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             TCEEEEEECGGGTTTTCCCS----SSCCTTCCEEEEEEEEEEEC
T ss_pred             CCEEEEEECchhccCccCCC----CCCCCCCeEEEEEEEEEEEc
Confidence            99999999999999999864    67999999999999999964

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.88  E-value=4.3e-22  Score=186.27  Aligned_cols=111  Identities=27%  Similarity=0.472  Sum_probs=104.9

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCc
Q 008780           24 MKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGE  103 (554)
Q Consensus        24 ~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge  103 (554)
                      ..++++|++|+++++|+|.. |+.||.|.+||++++.||++|++++.    .+.|+.|.+|.+++++||+++|.+|++|+
T Consensus        99 ~~~~~sGl~~~vl~~G~G~~-~~~gd~V~v~Y~g~l~dG~~fdss~~----~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge  173 (209)
T 3uf8_A           99 VVTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGG  173 (209)
T ss_dssp             CEECTTSCEEEEEECCCSCB-CCTTCEEEEEEEEEETTSCEEEESGG----GTCCEEEETTSSSSCHHHHHHHTTCBTTC
T ss_pred             ccCCCCceEEEEEEcCCCCc-CCCCCEEEEEEEEEECCCCEEEEccc----cCCCEEEEeCCCccchhHHHHHhCCCCCC
Confidence            45679999999999999998 99999999999999999999999987    67899999999999999999999999999


Q ss_pred             EEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780          104 VSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus       104 ~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~  143 (554)
                      ++.|+|||++|||..+.+    +.|||+++|+|+|+|++|
T Consensus       174 ~~~v~Ipp~~aYG~~g~~----~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          174 VRRLTIPPQLGYGARGAA----GVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             EEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEC
T ss_pred             EEEEEECcHHhCCCCCCC----CCcCCCCeEEEEEEEEEC
Confidence            999999999999999875    679999999999999975

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.88  E-value=7.3e-22  Score=168.38  Aligned_cols=109  Identities=23%  Similarity=0.370  Sum_probs=99.8

Q ss_pred             cccCCCC-eEEEEEecCCCC-CCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780           24 MKIVPGS-LMKAVMRPGGGD-STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (554)
Q Consensus        24 ~~~~~~g-~~~~~~~~G~g~-~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~  101 (554)
                      ..++++| ++|+++++|+|. ..|+.||.|.+||++++.||++|+++        .|+.|.+|.+++++||+++|.+|++
T Consensus         7 ~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~--------~p~~f~lG~~~~i~g~e~~l~gm~~   78 (118)
T 2awg_A            7 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE--------PELVFTLGDCDVIQALDLSVPLMDV   78 (118)
T ss_dssp             EESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE--------EEEEEETTSSCSCHHHHHHGGGSCT
T ss_pred             eEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC--------CCEEEEECCCChhHHHHHHHhCCCC
Confidence            4556777 999999999997 35899999999999998899999963        4899999999999999999999999


Q ss_pred             CcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (554)
Q Consensus       102 Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~  144 (554)
                      |+++.|.|||+++||..+.+    +.|||+++++|+|+|+++.
T Consensus        79 Ge~~~~~ip~~~ayG~~~~~----~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           79 GETAMVTADSKYCYGPQGRS----PYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             TCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred             CCEEEEEEChHHccCCCCCC----CccCCCCeEEEEEEEEEec
Confidence            99999999999999998875    6799999999999999985

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.87  E-value=1.1e-22  Score=180.90  Aligned_cols=120  Identities=24%  Similarity=0.377  Sum_probs=99.1

Q ss_pred             cCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHhcCCcC
Q 008780          264 LGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG  343 (554)
Q Consensus       264 ~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~~M~~G  343 (554)
                      +.+.+|+|+++++|.|..|.  +..|++|+|||+|++.|++|++| ||+++ +++|++|.+|.+++|+||+.+|.+|++|
T Consensus         7 ~~~~Gv~~~vl~~G~G~~p~--~~~G~~V~vhY~g~l~d~~G~~F-DsS~~-rg~P~~f~lG~g~vI~Gwd~gl~~M~~G   82 (165)
T 2lkn_A            7 LREDGIQKRVIQEGRGELPD--FQDGTKATFHYRTLHSDDEGTVL-DDSRA-RGKPMELIIGKKFKLPVWETIVCTMREG   82 (165)
T ss_dssp             HHTTSCCCCEEECCSSCCCC--CCTTCEEEEECEEECSSSSCCEE-EESTT-TTCCEEEESSSSCSCSHHHHHHTTCCTT
T ss_pred             ccCCCeEEEEEECCcCCCCC--CCCCCEEEEEEEEEEeCCCccEE-Eeccc-CCCCEEEEecCCCccHHHHHHHhcCccC
Confidence            46788999999999998651  24799999999999987779998 55555 6899999999999999999999999999


Q ss_pred             cEEEEEeCCCCcccc--------CCCCCC-----------------------------CCCCCeEEEEEEEcccccCCCC
Q 008780          344 EIALVTCPPDYAYDK--------FLRPAN-----------------------------VPEGAHIQWEIELLGFEKPKDW  386 (554)
Q Consensus       344 E~~~~~i~~~~~yg~--------~g~~~~-----------------------------ip~~~~l~~~ieL~~~~~~~~~  386 (554)
                      |++.|+|||++|||.        ......                             ++++++|+|+|||++++.|.++
T Consensus        83 e~~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~ey  162 (165)
T 2lkn_A           83 EIAQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGTY  162 (165)
T ss_dssp             CEEEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTTC
T ss_pred             ceEEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCccc
Confidence            999999999999982        000111                             2233679999999999998765


Q ss_pred             C
Q 008780          387 T  387 (554)
Q Consensus       387 ~  387 (554)
                      .
T Consensus       163 e  163 (165)
T 2lkn_A          163 Q  163 (165)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.87  E-value=8.1e-22  Score=171.96  Aligned_cols=120  Identities=32%  Similarity=0.495  Sum_probs=101.6

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEe
Q 008780          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (554)
Q Consensus       151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~  229 (554)
                      .+.++.++++++|.|...|+.||.|+|||++++.||++|+++.. ++|++|.+|.++++|||+++|.+|++||+++|+||
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip   91 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR   91 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence            67899999999999966799999999999999999999999863 68999999999999999999999999999999999


Q ss_pred             CCccCCCC-CCCCCCCcceEEEEEeeeeeeeeeccc--CCccEEE
Q 008780          230 SQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDML--GDGRLIK  271 (554)
Q Consensus       230 ~~~~~g~~-~~~~ip~~~~l~~~v~l~~~~~~~d~~--~dg~l~k  271 (554)
                      |+++||+. .++.||++++|+|+|+|+++.. .|+.  +||+|+|
T Consensus        92 ~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~-~~l~~~~d~~v~k  135 (135)
T 1r9h_A           92 SDYGYGDAGSPPKIPGGATLIFEVELFEWSA-EDISPDRDGTILR  135 (135)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC--------------
T ss_pred             hHHcCCCCCCCCCcCcCCcEEEEEEEEEeec-CCcCcCCCCcccC
Confidence            99999984 4478999999999999999976 4777  8888876

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=1.3e-21  Score=170.65  Aligned_cols=113  Identities=22%  Similarity=0.344  Sum_probs=101.4

Q ss_pred             cccCCCC-eEEEEEecCCCC-CCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780           24 MKIVPGS-LMKAVMRPGGGD-STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (554)
Q Consensus        24 ~~~~~~g-~~~~~~~~G~g~-~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~  101 (554)
                      ..++++| ++|+++++|+|. ..|+.||.|.+||++++.||++|+++        .|+.|.+|.+++++||+++|.+|++
T Consensus        11 ~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~--------~p~~f~lG~g~~i~G~e~~L~gm~~   82 (135)
T 2d9f_A           11 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE--------PELVFTLGDCDVIQALDLSVPLMDV   82 (135)
T ss_dssp             EESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEE--------EEEEEETTSCCSCTTTTTTGGGSCT
T ss_pred             cEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecC--------CCEEEEeCCCChhHHHHHHHhCCCC
Confidence            4455666 999999999997 34899999999999999899999963        4899999999999999999999999


Q ss_pred             CcEEEEEEeCCCccCCCC-CCCCCCCCCCCCCceEEEEEEEeeecccc
Q 008780          102 GEVSMFKMKPQMHYGEDD-CPVAAPSTFPKDEELHFEIEMIDFAKAKI  148 (554)
Q Consensus       102 Ge~~~~~ip~~~~yg~~~-~~~~~~~~ip~~~~l~~~v~l~~~~~~~~  148 (554)
                      |+++.|+|||+++||..+ .+    +.|||+++++|+|+|+++....+
T Consensus        83 Ge~~~v~ip~~~aYG~~~~~~----~~Ip~~~~l~f~vel~~v~~~~~  126 (135)
T 2d9f_A           83 GETAMVTADSKYCYGPQGSRS----PYIPPHAALCLEVTLKTAVDRPD  126 (135)
T ss_dssp             TCEEEEEECHHHHTCTTCCSS----SCCCTTCCEEEEEEEEEEESSCS
T ss_pred             CCEEEEEEChhHccCcCCcCC----CccCCCCeEEEEEEEEEeecCCc
Confidence            999999999999999988 43    67999999999999999986543

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.86  E-value=1.6e-21  Score=183.22  Aligned_cols=111  Identities=25%  Similarity=0.539  Sum_probs=102.2

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (554)
Q Consensus        22 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~  101 (554)
                      ....++++|++|+++++|+|.. |+.||.|.+||++++.||++|++++.    ++.|+.|.+  +++++||+++|.+|++
T Consensus       114 ~~v~~~~sGl~y~vl~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~----~g~p~~f~l--g~vI~G~eeaL~gMk~  186 (224)
T 1q6h_A          114 KGVKTSSTGLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRL--DGVIPGWTEGLKNIKK  186 (224)
T ss_dssp             TTEEECTTSCEEEEEECCSSCC-CCTTCEEEEEEEEEETTSCEEEEGGG----GTSCEEEEG--GGSCHHHHHHGGGSCT
T ss_pred             CCeEECCCceEEEEEecccCcc-ccCCCEEEEEEEEEeCCCCEEeeccc----cCCCEEEEc--CCcchhHHHHHcCCCC
Confidence            3455689999999999999987 99999999999999999999999997    678999999  5899999999999999


Q ss_pred             CcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (554)
Q Consensus       102 Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~  144 (554)
                      |++++|+|||+++||..+.+    + |||+++++|+|+|+++.
T Consensus       187 Gek~~v~IP~~laYG~~g~~----~-IPp~stLiF~VeL~~ik  224 (224)
T 1q6h_A          187 GGKIKLVIPPELAYGKAGVP----G-IPPNSTLVFDVELLDVK  224 (224)
T ss_dssp             TCEEEEEECGGGTTTTTCBT----T-BCTTCCEEEEEEEEEEC
T ss_pred             CCEEEEEECchhhcCcCCCC----C-CCCCCEEEEEEEEEEeC
Confidence            99999999999999998864    4 99999999999999873

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.86  E-value=4.1e-21  Score=164.22  Aligned_cols=106  Identities=23%  Similarity=0.374  Sum_probs=98.6

Q ss_pred             CCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCC--------CccEEEEeCCCCccchHHHHhccCCcCcE
Q 008780          152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE--------GEPYFFTFGKSEVPKGLEMGIGTMTREEK  223 (554)
Q Consensus       152 d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~--------~~p~~~~~g~~~~~~gle~~l~~m~~Ge~  223 (554)
                      ..++.++++++|.|...|+.||.|+|||++++.||++|+++..        +.|+.|.+|.++++|||+++|.+|++||+
T Consensus         3 p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~   82 (119)
T 3kz7_A            3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEK   82 (119)
T ss_dssp             SCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTCE
T ss_pred             CCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCCE
Confidence            3589999999999977799999999999999999999999864        48999999999999999999999999999


Q ss_pred             EEEEEeCCccCCCCCCC--CCCCcceEEEEEeeeee
Q 008780          224 AVIYVTSQYLTPSPLMP--VVEGCEEVHFEVELVHL  257 (554)
Q Consensus       224 ~~~~v~~~~~~g~~~~~--~ip~~~~l~~~v~l~~~  257 (554)
                      ++|+|||+++||+.+.+  .||++++|+|+|+|+++
T Consensus        83 ~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           83 ARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             EEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence            99999999999996553  69999999999999987

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.86  E-value=2.8e-21  Score=170.40  Aligned_cols=116  Identities=37%  Similarity=0.585  Sum_probs=104.3

Q ss_pred             eeeccc--CCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHH
Q 008780          259 QVRDML--GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMC  336 (554)
Q Consensus       259 ~~~d~~--~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~  336 (554)
                      +.+|++  .|++|+|+++++|.|..   .|..++.|+|||+|++.|  |++|+++ .+ +++|+.|.+|.+.+|+||+.+
T Consensus        25 ~~~di~~~~d~gv~~~i~~~G~G~~---~p~~gd~V~v~Y~g~~~d--G~~fdss-~~-~~~p~~f~lG~g~~i~G~e~~   97 (144)
T 3o5e_A           25 QGEDITSKKDRGVLKIVKRVGNGEE---TPMIGDKVYVHYKGKLSN--GKKFDSS-HD-RNEPFVFSLGKGQVIKAWDIG   97 (144)
T ss_dssp             HCEECCSSCSSSEEEEEEECCBSSC---CCCTTCEEEEEEEEECTT--SCEEEES-GG-GTSCEEEETTSSSSCHHHHHH
T ss_pred             ccccccccCCCeEEEEEEECCCCCc---cCCCCCEEEEEEEEEECC--CCEEEee-cc-cCCCeEEEeCCCcccHHHHHH
Confidence            346887  89999999999999973   257899999999999876  8998554 43 478999999999999999999


Q ss_pred             HhcCCcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccc
Q 008780          337 VRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  381 (554)
Q Consensus       337 l~~M~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~  381 (554)
                      |.+|++||++.|.|||.++||..+.++.|||+++|+|+|+|+++.
T Consensus        98 l~gm~~Ge~~~v~ipp~~aYG~~g~~~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A           98 VATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             HTTCCBTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             HhCCCCCCEEEEEEChHHCcCCCCCCCCcCCCCeEEEEEEEEEec
Confidence            999999999999999999999999888999999999999999875

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.85  E-value=4.9e-21  Score=174.90  Aligned_cols=127  Identities=30%  Similarity=0.438  Sum_probs=101.5

Q ss_pred             CCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCC-CchHHHHHHHhcCCcC
Q 008780          265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG-LVPEGFEMCVRLMLPG  343 (554)
Q Consensus       265 ~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~-~v~~g~~~~l~~M~~G  343 (554)
                      .+++|.++++++|.|..+    ..|+.|+|||+|++.+ +|++|++| +. +++|+.|.+|.+ .+++||+.+|.+|++|
T Consensus        47 ~~~gl~~~vl~~G~G~~~----~~Gd~V~v~Y~g~l~~-dG~~fdss-~~-~~~p~~f~lG~g~~vi~G~eeaL~gMk~G  119 (180)
T 2f4e_A           47 LDEKVSKQIIKEGHGSKP----SKYSTCFLHYRAWTKN-SQHKFEDT-WH-EQQPIELVLGKEKKELAGLAIGVASMKSG  119 (180)
T ss_dssp             EETTEEEEEEECCBSCCB----CTTCEEEEEEEEEETT-TCCEEEET-TT-TTCCEEEETTSCCGGGHHHHHHHTTCCBT
T ss_pred             CCCceEEEEEeCCCCCCC----CCCCEEEEEEEEEECC-CCcEEecc-Cc-cCCCEEEEeCCCCchhHHHHHHHhCCCCC
Confidence            346799999999999854    7899999999999875 48888554 43 478999999999 9999999999999999


Q ss_pred             cEEEEEeCCCCccccCCC--CCCCCCCCeEEEEEEEcccccCCC---CCCCChhhhhHHH
Q 008780          344 EIALVTCPPDYAYDKFLR--PANVPEGAHIQWEIELLGFEKPKD---WTGLSFDGIMDEA  398 (554)
Q Consensus       344 E~~~~~i~~~~~yg~~g~--~~~ip~~~~l~~~ieL~~~~~~~~---~~~~~~~~~~~~a  398 (554)
                      |++.|.|||+++||..+.  ++.||++++++|+|+|+++..+.+   .|.|+.++++..|
T Consensus       120 e~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~~A  179 (180)
T 2f4e_A          120 ERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAA  179 (180)
T ss_dssp             CEEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBCCC---------------
T ss_pred             CEEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHhhc
Confidence            999999999999999886  457999999999999999998877   8899999998776

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.85  E-value=1.5e-20  Score=162.00  Aligned_cols=111  Identities=18%  Similarity=0.219  Sum_probs=102.3

Q ss_pred             ccCCCCeEEEEEecCCC-cCCCCCCceEEEEEEEEeC-CCcEEEecC---CCccEEEEeCCCCccchHHHHhccCCcCcE
Q 008780          149 IADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTG-DGKLILSHR---EGEPYFFTFGKSEVPKGLEMGIGTMTREEK  223 (554)
Q Consensus       149 ~~~d~gl~k~i~~~g~g-~~~~~~g~~V~v~y~~~~~-~g~~~~s~~---~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~  223 (554)
                      ...+.++.++++++|.+ ...|+.||.|+|||++++. ||++|+++.   .++|+.|.+|.++++|||+++|.+|++||+
T Consensus         8 ~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~   87 (125)
T 4dip_A            8 LIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEK   87 (125)
T ss_dssp             GCCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTCE
T ss_pred             EECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCCE
Confidence            34567999999999982 3889999999999999998 999999986   578999999999999999999999999999


Q ss_pred             EEEEEeCCccCCCCCCCCCCCcceEEEEEeeeeeee
Q 008780          224 AVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQ  259 (554)
Q Consensus       224 ~~~~v~~~~~~g~~~~~~ip~~~~l~~~v~l~~~~~  259 (554)
                      ++|.|||+++||+.+.+.||++++|+|+|+|+++.+
T Consensus        88 ~~~~ip~~~aYG~~g~~~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           88 RKLIIPPALGYGKEGKGKIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             EEEEECGGGTTTTTCBTTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEChHHhcCCCCCCCCCCCCeEEEEEEEEEEEc
Confidence            999999999999987779999999999999999863

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.85  E-value=1.2e-20  Score=163.17  Aligned_cols=108  Identities=31%  Similarity=0.474  Sum_probs=101.0

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEe
Q 008780          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (554)
Q Consensus       151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~  229 (554)
                      .+.++.+.++++|.|...|+.||.|+|||++++.||++|+++. .++|+.|.+|.++++|||+++|.+|++||++.|+||
T Consensus        17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip   96 (128)
T 3o5q_A           17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK   96 (128)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence            6789999999999996689999999999999999999999986 478999999999999999999999999999999999


Q ss_pred             CCccCCCCC-CCCCCCcceEEEEEeeeeee
Q 008780          230 SQYLTPSPL-MPVVEGCEEVHFEVELVHLI  258 (554)
Q Consensus       230 ~~~~~g~~~-~~~ip~~~~l~~~v~l~~~~  258 (554)
                      |+++||..+ ++.||++++|+|+|+|+++.
T Consensus        97 ~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           97 PEYAYGSAGSLPKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             hHHcCCCCCCCCCcCCCCEEEEEEEEEEec
Confidence            999999854 46899999999999999985

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.85  E-value=1.3e-20  Score=170.06  Aligned_cols=153  Identities=22%  Similarity=0.371  Sum_probs=125.8

Q ss_pred             hhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc----CCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHH
Q 008780          391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  466 (554)
Q Consensus       391 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~----~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A  466 (554)
                      .+++++.+..++++|+.+|+.|+|.+|+..|++|+..+...    .|.+ ++..........+++|+|.||+++++|.+|
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~~~~~~A   82 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGE-PEWVELDRKNIPLYANMSQCYLNIGDLHEA   82 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTS-HHHHHHHHTHHHHHHHHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            45678899999999999999999999999999999965432    3333 334455666788999999999999999999


Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhc
Q 008780          467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKGCL  545 (554)
Q Consensus       467 ~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f  545 (554)
                      +.+|+++|+++|+++++|+++|.+|..+|+|++|+.+|++|++++|++...++..|..+..+++ ..++++  ++|++||
T Consensus        83 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k--~~~~~~f  160 (162)
T 3rkv_A           83 EETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSR--VTYSKMF  160 (162)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSC--C------
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence            9999999999999999999999999999999999999999999999985478889999988887 556666  8999999


Q ss_pred             c
Q 008780          546 T  546 (554)
Q Consensus       546 ~  546 (554)
                      +
T Consensus       161 ~  161 (162)
T 3rkv_A          161 Q  161 (162)
T ss_dssp             -
T ss_pred             C
Confidence            6

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.84  E-value=3.9e-21  Score=167.42  Aligned_cols=116  Identities=30%  Similarity=0.478  Sum_probs=98.4

Q ss_pred             eeecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHh
Q 008780          259 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVR  338 (554)
Q Consensus       259 ~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~  338 (554)
                      ++.|++.+++|+++++++|.|..+    ..++.|+|||+|++.+ +|++|++ +.. +++|+.|.+|.+.+++||+.+|.
T Consensus        18 ~~~~v~~~~gl~~~vl~~G~g~~~----~~gd~V~v~Y~g~l~~-~G~~fds-s~~-~~~p~~f~lG~g~~i~G~e~aL~   90 (134)
T 3b7x_A           18 RMLDISGDRGVLKDVIREGAGDLV----APDASVLVKYSGYLEH-MDRPFDS-NYF-RKTPRLMKLGEDITLWGMELGLL   90 (134)
T ss_dssp             TCEESSSSSSEEEEEEECCEEEEC----CTTCEEEEEEEEECTT-CSSCSEE-C--------CEEC-CCCCCHHHHHHHH
T ss_pred             ccceeeCCCCEEEEEEEcCCCCCC----CCCCEEEEEEEEEECC-CCeEEEe-cCC-CCCCEEEEcCCcchhHHHHHHHh
Confidence            357899999999999999999865    5799999999999874 4888854 443 46899999999999999999999


Q ss_pred             cCCcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccc
Q 008780          339 LMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  381 (554)
Q Consensus       339 ~M~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~  381 (554)
                      +|++||++.|.|||++|||..+.++.||++++++|+|+|+++.
T Consensus        91 gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           91 SMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             TCEETCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             CCCCCCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEEe
Confidence            9999999999999999999999888899999999999999875

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.84  E-value=2.3e-20  Score=156.33  Aligned_cols=104  Identities=27%  Similarity=0.442  Sum_probs=96.0

Q ss_pred             CeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCc
Q 008780          154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY  232 (554)
Q Consensus       154 gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~  232 (554)
                      |+.++++++|.|...|+.||.|++||++++.||++|+++.. ++|+.|.+|.++++|||+++|.+|++||++++.|||++
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~   80 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH
Confidence            57899999999955599999999999999999999999863 68999999999999999999999999999999999999


Q ss_pred             cCCCCC-CCCCCCcceEEEEEeeeee
Q 008780          233 LTPSPL-MPVVEGCEEVHFEVELVHL  257 (554)
Q Consensus       233 ~~g~~~-~~~ip~~~~l~~~v~l~~~  257 (554)
                      +||+.+ ++.||++++|+|+|+|+++
T Consensus        81 ayG~~~~~~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           81 AYGATGHPGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             ccCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            999864 4679999999999999987

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.84  E-value=3.4e-20  Score=156.89  Aligned_cols=106  Identities=23%  Similarity=0.323  Sum_probs=97.7

Q ss_pred             CCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeC
Q 008780          152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTS  230 (554)
Q Consensus       152 d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~  230 (554)
                      +.|+.++++++|.|...|+.||.|++||++++.||++|+++.. ++|+.|.+|.++++|||+++|.+|++||+++|.|||
T Consensus         5 ~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~ip~   84 (113)
T 1yat_A            5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPG   84 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEECG
T ss_pred             CCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECH
Confidence            4589999999999944499999999999999999999999875 689999999999999999999999999999999999


Q ss_pred             CccCCCCC-CCCCCCcceEEEEEeeeee
Q 008780          231 QYLTPSPL-MPVVEGCEEVHFEVELVHL  257 (554)
Q Consensus       231 ~~~~g~~~-~~~ip~~~~l~~~v~l~~~  257 (554)
                      +++||+.+ ++.||++++|+|+|+|+++
T Consensus        85 ~~ayG~~~~~~~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           85 PYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             GGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             HHCcCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            99999864 4569999999999999987

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.84  E-value=2.7e-20  Score=154.42  Aligned_cols=96  Identities=25%  Similarity=0.476  Sum_probs=89.2

Q ss_pred             CCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCC
Q 008780           43 STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPV  122 (554)
Q Consensus        43 ~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~  122 (554)
                      ..++.||.|.+||++++.||++|++|+.    .+.|+.|.+|.+++++||+++|.+|++|+++.|+|||+++||..+.+ 
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~----~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~-   78 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSLP----QNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAP-   78 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEESTT----TTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBT-
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCCC----CCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCC-
Confidence            3489999999999999889999999986    56899999999999999999999999999999999999999998875 


Q ss_pred             CCCCCCCCCCceEEEEEEEeeecc
Q 008780          123 AAPSTFPKDEELHFEIEMIDFAKA  146 (554)
Q Consensus       123 ~~~~~ip~~~~l~~~v~l~~~~~~  146 (554)
                         +.||++++++|+|+|+++...
T Consensus        79 ---~~Ip~~~~l~f~v~l~~v~~~   99 (102)
T 2pbc_A           79 ---PKIPGGATLVFEVELLKIERR   99 (102)
T ss_dssp             ---TTBCTTCCEEEEEEEEEEGGG
T ss_pred             ---CCcCcCCeEEEEEEEEEeccc
Confidence               679999999999999999754

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.83  E-value=3.9e-20  Score=160.52  Aligned_cols=107  Identities=23%  Similarity=0.321  Sum_probs=99.1

Q ss_pred             cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEEE
Q 008780          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (554)
Q Consensus       150 ~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v  228 (554)
                      ..+.++.++++++|.| ..|+.||.|+|+|++++.||++|+++.. ++|+.|.+|.++++|||+++|.+|++||+++|.|
T Consensus        25 ~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~i  103 (133)
T 2y78_A           25 TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTI  103 (133)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEEE
T ss_pred             ECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEE
Confidence            3567999999999999 7899999999999999999999999864 6899999999999999999999999999999999


Q ss_pred             eCCccCCCCCC-CCCCCcceEEEEEeeeee
Q 008780          229 TSQYLTPSPLM-PVVEGCEEVHFEVELVHL  257 (554)
Q Consensus       229 ~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~  257 (554)
                      ||+++||+.+. +.||++++|+|+|+|+++
T Consensus       104 p~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          104 PPQLGYGARGAGGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             CGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             CcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence            99999998654 469999999999999875

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.82  E-value=6.3e-20  Score=170.93  Aligned_cols=103  Identities=19%  Similarity=0.287  Sum_probs=97.0

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeC
Q 008780          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTS  230 (554)
Q Consensus       151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~  230 (554)
                      .+.|+.++++++|+| ..|..||.|+|||++++.||++|+|+  +.|++|.+|  ++||||+++|.+|++|++++|+|||
T Consensus       115 ~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss--~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~IPp  189 (219)
T 3oe2_A          115 LADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS--TQPQWFRLD--SVISGWTSALQNMPTGAKWRLVIPS  189 (219)
T ss_dssp             CGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEEC--SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEECG
T ss_pred             CCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeecc--CCcEEEEec--chhHHHHHHHhCCCCCCEEEEEECc
Confidence            557999999999999 78999999999999999999999998  889999998  8999999999999999999999999


Q ss_pred             CccCCCCCCC-CCCCcceEEEEEeeeeee
Q 008780          231 QYLTPSPLMP-VVEGCEEVHFEVELVHLI  258 (554)
Q Consensus       231 ~~~~g~~~~~-~ip~~~~l~~~v~l~~~~  258 (554)
                      +++||..+.+ .|||+++|+|+|+|+++.
T Consensus       190 ~lAYG~~g~~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          190 DQAYGAEGAGDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             GGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             hhcCCCCCCCCCCCCCCeEEEEEEEEEEe
Confidence            9999997655 599999999999999985

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.82  E-value=1.4e-19  Score=156.83  Aligned_cols=114  Identities=32%  Similarity=0.548  Sum_probs=100.6

Q ss_pred             ecccCCccEEEEEeeCC-CC--CCCCCCCCCCCeEEEEEEEEE-ecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHH
Q 008780          261 RDMLGDGRLIKRRIRDG-KG--EFPMDCPLHDSLLCVHYKGML-LNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMC  336 (554)
Q Consensus       261 ~d~~~dg~l~k~il~~G-~g--~~~~~~p~~~~~V~v~y~g~~-~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~  336 (554)
                      .+++.+|.++++++++| .|  ..    |..++.|+|||.+++ .|  |++|+++. . +++|+.|.+|.+.+++||+.+
T Consensus        10 ~~~~~~g~~~~~il~~G~~g~g~~----~~~gd~V~v~Y~g~~~~d--G~~fd~s~-~-~~~p~~f~lG~g~~i~g~e~~   81 (129)
T 2vn1_A           10 VELTADGGVIKTILKKGDEGEENI----PKKGNEVTVHYVGKLEST--GKVFDSSF-D-RNVPFKFHLEQGEVIKGWDIC   81 (129)
T ss_dssp             EECSTTSSEEEEEEECCCCSGGGS----CCTTCEEEEEEEEEETTT--CCEEEEGG-G-TTCCEEEETTSSSSCHHHHHH
T ss_pred             cEECCCCCEEEEEEeCCCCCCCCc----CCCCCEEEEEEEEEECCC--CeEEEecC-C-CCccEEEEeCCCCcCHHHHHH
Confidence            46688999999999977 44  44    478999999999998 44  89985554 3 468999999999999999999


Q ss_pred             HhcCCcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEccccc
Q 008780          337 VRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK  382 (554)
Q Consensus       337 l~~M~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~  382 (554)
                      |.+|++||++.|.|||+++||..+.++.||++++++|+|+|+++..
T Consensus        82 l~gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           82 VSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             HTTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             HhCCCCCCEEEEEEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence            9999999999999999999999998878999999999999999875

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.81  E-value=1.4e-19  Score=154.22  Aligned_cols=113  Identities=27%  Similarity=0.372  Sum_probs=100.8

Q ss_pred             eeecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHh
Q 008780          259 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVR  338 (554)
Q Consensus       259 ~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~  338 (554)
                      .+.+++.+|++.++++++|.|...  .|..++.|++||++++.+  |++|++      ++|+.|.+|.+.+++||+.+|.
T Consensus         5 ~~~~~~~~g~~~~~vl~~G~G~~~--~~~~gd~V~v~y~g~~~d--G~~~ds------~~p~~f~lG~~~~i~g~e~~l~   74 (118)
T 2awg_A            5 EWLDILGNGLLRKKTLVPGPPGSS--RPVKGQVVTVHLQTSLEN--GTRVQE------EPELVFTLGDCDVIQALDLSVP   74 (118)
T ss_dssp             CEEESSSSSSEEEEEEECCCTTCC--CCCTTSEEEEEEEEECTT--SCEEEE------EEEEEEETTSSCSCHHHHHHGG
T ss_pred             cceEECCCCCEEEEEEEcCCCCCc--cCCCCCEEEEEEEEEECC--CCEEEC------CCCEEEEECCCChhHHHHHHHh
Confidence            357889999999999999999721  247899999999999855  888843      2689999999999999999999


Q ss_pred             cCCcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccc
Q 008780          339 LMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  381 (554)
Q Consensus       339 ~M~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~  381 (554)
                      +|++||++.|.|||+++||..+.++.||++++++|+|+|+++.
T Consensus        75 gm~~Ge~~~~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           75 LMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             GSCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence            9999999999999999999999888899999999999999875

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.81  E-value=1.3e-19  Score=156.72  Aligned_cols=107  Identities=33%  Similarity=0.464  Sum_probs=96.2

Q ss_pred             CCCCeEEE--EEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEE
Q 008780          151 DDFGVVKK--VINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIY  227 (554)
Q Consensus       151 ~d~gl~k~--i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~  227 (554)
                      ...|+.+.  ++++|.|...|+.||.|+++|++++.||++|+++.. ++|+.|.+|.++++|||+++|.+|++||++.|.
T Consensus        20 ~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~   99 (130)
T 2lgo_A           20 GSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT   99 (130)
T ss_dssp             SSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEEEEE
T ss_pred             CCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEE
Confidence            44566666  999999954499999999999999999999999864 589999999999999999999999999999999


Q ss_pred             EeCCccCCCCC-CCCCCCcceEEEEEeeeee
Q 008780          228 VTSQYLTPSPL-MPVVEGCEEVHFEVELVHL  257 (554)
Q Consensus       228 v~~~~~~g~~~-~~~ip~~~~l~~~v~l~~~  257 (554)
                      |||+++||+.+ ++.||++++|+|+|+|+++
T Consensus       100 ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A          100 IPYQLAYGERGYPPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             ECTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred             ECcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            99999999864 4569999999999999875

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.81  E-value=1.5e-19  Score=160.59  Aligned_cols=116  Identities=27%  Similarity=0.358  Sum_probs=102.4

Q ss_pred             eecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHhc
Q 008780          260 VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL  339 (554)
Q Consensus       260 ~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~~  339 (554)
                      +.|++.+|.+.++++++|.|..  ..|..++.|+|||+|++.|  |++|++      ++|+.|.+|.+.+|+||+.+|.+
T Consensus        36 ~~~~~~sG~v~~~vl~~G~G~~--~~p~~gd~V~v~Y~g~l~d--G~~fds------~~p~~f~lG~g~vi~G~eeaL~g  105 (157)
T 2jwx_A           36 WLDILGNGLLRKKTLVPGPPGS--SRPVKGQVVTVHLQTSLEN--GTRVQE------EPELVFTLGDCDVIQALDLSVPL  105 (157)
T ss_dssp             CEESSSSSSEEEEEEECCSTTS--CCCCTTEEEEEEEEEECTT--SCEEEE------EEEEEEETTTTSSCHHHHHHTTT
T ss_pred             cceECCCCCEEEEEEEccCCCc--cCCCCCCEEEEEEEEEECC--CCEeec------CCCEEEEeCCCChhHHHHHHHcC
Confidence            3578899999999999999972  1247899999999999866  898854      26899999999999999999999


Q ss_pred             CCcCcEEEEEeCCCCccccCC-CCCCCCCCCeEEEEEEEcccccCCC
Q 008780          340 MLPGEIALVTCPPDYAYDKFL-RPANVPEGAHIQWEIELLGFEKPKD  385 (554)
Q Consensus       340 M~~GE~~~~~i~~~~~yg~~g-~~~~ip~~~~l~~~ieL~~~~~~~~  385 (554)
                      |++||++.|.||++++||..+ .++.|||+++++|+|+|+++.....
T Consensus       106 Mk~Ge~~~v~IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~~~  152 (157)
T 2jwx_A          106 MDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDLEH  152 (157)
T ss_dssp             SCTTCEEEEEECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEECSC
T ss_pred             CCCCCEEEEEECchhcCCcccccCCCcCCCCeEEEEEEEEEEEcccc
Confidence            999999999999999999999 6678999999999999999987653

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.81  E-value=3.6e-19  Score=166.38  Aligned_cols=109  Identities=23%  Similarity=0.327  Sum_probs=100.4

Q ss_pred             cccCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEE
Q 008780          148 IIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVI  226 (554)
Q Consensus       148 ~~~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~  226 (554)
                      ....+.|+.+.++++|.| ..|+.||.|++||++++.||++|+++. .+.|+.|.+|.++++|||+++|.+|++||+++|
T Consensus        99 ~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v  177 (209)
T 3uf8_A           99 VVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRL  177 (209)
T ss_dssp             CEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEE
T ss_pred             ccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEE
Confidence            345678999999999999 669999999999999999999999986 478999999999999999999999999999999


Q ss_pred             EEeCCccCCCCCC-CCCCCcceEEEEEeeeee
Q 008780          227 YVTSQYLTPSPLM-PVVEGCEEVHFEVELVHL  257 (554)
Q Consensus       227 ~v~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~  257 (554)
                      +|||+++||+.+. +.||++++|+|+|+|+++
T Consensus       178 ~Ipp~~aYG~~g~~~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          178 TIPPQLGYGARGAAGVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             EECcHHhCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            9999999999655 459999999999999875

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=6.5e-20  Score=159.86  Aligned_cols=122  Identities=26%  Similarity=0.324  Sum_probs=107.5

Q ss_pred             eecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHhc
Q 008780          260 VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL  339 (554)
Q Consensus       260 ~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~~  339 (554)
                      +.+++.+|.+.++++++|.|..  ..|..++.|+|||++++.|  |++|++      ++|+.|.+|.+.+++||+.+|.+
T Consensus        10 ~~~~~~~g~l~~~vl~~G~G~~--~~~~~gd~V~v~Y~g~~~d--G~~fds------~~p~~f~lG~g~~i~G~e~~L~g   79 (135)
T 2d9f_A           10 WLDILGNGLLRKKTLVPGPPGS--SRPVKGQVVTVHLQTSLEN--GTRVQE------EPELVFTLGDCDVIQALDLSVPL   79 (135)
T ss_dssp             CEESSSSSSSEEEEEECCCSSC--CCCCTTSEEEEEEEEEESS--SCEEEE------EEEEEEETTSCCSCTTTTTTGGG
T ss_pred             CcEECCCCCEEEEEEEcCCCCC--ccCCCCCEEEEEEEEEECC--CCEEec------CCCEEEEeCCCChhHHHHHHHhC
Confidence            4688999999999999999972  1247899999999999865  888843      36899999999999999999999


Q ss_pred             CCcCcEEEEEeCCCCccccCC-CCCCCCCCCeEEEEEEEcccccCCCCCCCCh
Q 008780          340 MLPGEIALVTCPPDYAYDKFL-RPANVPEGAHIQWEIELLGFEKPKDWTGLSF  391 (554)
Q Consensus       340 M~~GE~~~~~i~~~~~yg~~g-~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~  391 (554)
                      |++||++.|.||++++||..+ .++.||++++++|+|+|+++....+...++.
T Consensus        80 m~~Ge~~~v~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~~~e~~s~  132 (135)
T 2d9f_A           80 MDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPDLEMSGP  132 (135)
T ss_dssp             SCTTCEEEEEECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSCSSSSCCC
T ss_pred             CCCCCEEEEEEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCCchhhcCc
Confidence            999999999999999999998 6678999999999999999998777666554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.80  E-value=1.2e-18  Score=150.51  Aligned_cols=115  Identities=28%  Similarity=0.543  Sum_probs=108.1

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      .+.++.++++|+.+|++|+|++|+..|++|++    ++|.+           ..+++|+|.||.++|+|++|+.+|++++
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~al   74 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK----RDPEN-----------AILYSNRAACLTKLMEFQRALDDCDTCI   74 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence            45788999999999999999999999999999    88988           7899999999999999999999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      +++|+++.+|+++|.++..+|++++|+.+|++|++++|+| .+++..|..+
T Consensus        75 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-~~a~~~l~~~  124 (126)
T 4gco_A           75 RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN-EEAREGVRNC  124 (126)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC-HHHHHHHHHh
Confidence            9999999999999999999999999999999999999998 6677666654

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.80  E-value=1.7e-19  Score=156.05  Aligned_cols=107  Identities=21%  Similarity=0.231  Sum_probs=98.7

Q ss_pred             cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhcc------CCcCc
Q 008780          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGT------MTREE  222 (554)
Q Consensus       150 ~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~------m~~Ge  222 (554)
                      ..+.|+.++++++|.| ..|+.||.|+|||++++.||++|+++.. ++|+.|.+|.++++|||+++|.+      |++|+
T Consensus         9 ~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~Ge   87 (129)
T 1u79_A            9 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG   87 (129)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred             ECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCCCC
Confidence            3557999999999999 7899999999999999999999999863 68999999999999999999998      99999


Q ss_pred             EEEEEEeCCccCCCCCC------CCCCCcceEEEEEeeeee
Q 008780          223 KAVIYVTSQYLTPSPLM------PVVEGCEEVHFEVELVHL  257 (554)
Q Consensus       223 ~~~~~v~~~~~~g~~~~------~~ip~~~~l~~~v~l~~~  257 (554)
                      +++|.|||+++||+.+.      +.||++++|+|+|+|+++
T Consensus        88 ~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           88 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            99999999999998653      579999999999999986

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.79  E-value=3.3e-19  Score=160.15  Aligned_cols=120  Identities=26%  Similarity=0.408  Sum_probs=102.5

Q ss_pred             cCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHhcCCcC
Q 008780          264 LGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG  343 (554)
Q Consensus       264 ~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~~M~~G  343 (554)
                      +.+++|+++++++|.|..   +|..++.|+|||.|++.|  |++|+++. . ++.|+.|.+  +.+|+||+.+|.+|++|
T Consensus        34 ~~~sGl~~~vl~~G~G~~---~~~~gd~V~v~Y~g~l~d--G~~fdss~-~-~g~p~~f~l--g~vI~G~eeaL~gMk~G  104 (167)
T 1jvw_A           34 KLPSGLVFQRIARGSGKR---APAIDDKCEVHYTGRLRD--GTVFDSSR-E-RGKPTTFRP--NEVIKGWTEALQLMREG  104 (167)
T ss_dssp             ECTTSCEEEEEECCCCSB---CCCTTCCEEEEEEEECTT--SCEEEEHH-H-HTSCEEECG--GGSCHHHHHHHTTCCTT
T ss_pred             ECCCCEEEEEEEcCCCCc---CCCCCCEEEEEEEEEECC--CCEEeecc-c-cCCCEEEEe--CchhHHHHHHHcCCCCC
Confidence            456789999999999986   147899999999999876  99985554 3 468999999  47999999999999999


Q ss_pred             cEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccccCCCCCCCChhhh
Q 008780          344 EIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGI  394 (554)
Q Consensus       344 E~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~~~  394 (554)
                      |++.|.|||+++||..+.++.||||++|+|+|+|+++.++.  +.++.++.
T Consensus       105 e~~~~~Ip~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~~~~--~~~~~~e~  153 (167)
T 1jvw_A          105 DRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGG--KGRTAEEV  153 (167)
T ss_dssp             CEEEEEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGGC--CSCBHHHH
T ss_pred             CEEEEEECchhhCCCCCCCCCcCCCCeEEEEEEEEEEEcCC--CCCCHHHH
Confidence            99999999999999999888899999999999999998643  23555554

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.78  E-value=1.1e-18  Score=162.81  Aligned_cols=107  Identities=24%  Similarity=0.287  Sum_probs=98.4

Q ss_pred             cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEE
Q 008780          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (554)
Q Consensus       150 ~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v  228 (554)
                      ..+.|+.++++++|+| ..|+.||.|+|||++++.||++|+++. ++.|++|.+  ++++|||+++|.+|++|++++|+|
T Consensus       103 ~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~I  179 (213)
T 1fd9_A          103 VLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQLMPAGSTWEIYV  179 (213)
T ss_dssp             ECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEG--GGSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             ECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEc--CchhhHHHHHHcCCCCCCEEEEEE
Confidence            3567999999999999 889999999999999999999999986 478999999  489999999999999999999999


Q ss_pred             eCCccCCCCCC-CCCCCcceEEEEEeeeeeee
Q 008780          229 TSQYLTPSPLM-PVVEGCEEVHFEVELVHLIQ  259 (554)
Q Consensus       229 ~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~~~  259 (554)
                      ||+++||..+. +.||++++|+|+|+|+++.+
T Consensus       180 P~~laYG~~g~~~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          180 PSGLAYGPRSVGGPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             CGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             CchhccCccCCCCCCCCCCeEEEEEEEEEEEc
Confidence            99999998654 57999999999999999863

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.78  E-value=1.3e-18  Score=163.41  Aligned_cols=104  Identities=23%  Similarity=0.363  Sum_probs=96.9

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEe
Q 008780          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (554)
Q Consensus       151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~  229 (554)
                      .+.++.+.++++|.| ..|+.||.|+|||++++.||++|+|+. ++.|+.|.+  ++++|||+++|.+|++|++++|+||
T Consensus       119 ~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~IP  195 (224)
T 1q6h_A          119 SSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVIP  195 (224)
T ss_dssp             CTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEG--GGSCHHHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEc--CCcchhHHHHHcCCCCCCEEEEEEC
Confidence            457999999999999 789999999999999999999999986 478999999  4899999999999999999999999


Q ss_pred             CCccCCCCCCCCCCCcceEEEEEeeeee
Q 008780          230 SQYLTPSPLMPVVEGCEEVHFEVELVHL  257 (554)
Q Consensus       230 ~~~~~g~~~~~~ip~~~~l~~~v~l~~~  257 (554)
                      |+++||..+.+.||++++|+|+|+|+++
T Consensus       196 ~~laYG~~g~~~IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          196 PELAYGKAGVPGIPPNSTLVFDVELLDV  223 (224)
T ss_dssp             GGGTTTTTCBTTBCTTCCEEEEEEEEEE
T ss_pred             chhhcCcCCCCCCCCCCEEEEEEEEEEe
Confidence            9999999766669999999999999987

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.78  E-value=7.6e-19  Score=155.83  Aligned_cols=137  Identities=18%  Similarity=0.190  Sum_probs=114.3

Q ss_pred             CChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHH-HHHhhhHHHHHHHHHHHHHHccCHHHHH
Q 008780          389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-KVFVGKRNLLHLNVAACLLKLGECRKSI  467 (554)
Q Consensus       389 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~-~~~~~~~~~~~~nla~~~~kl~~~~~A~  467 (554)
                      |.+-.....+..+++.|+.+|+.|+|++|+..|++||+    ++|.+.+.. .........+|+|+|.|+.++|+|++|+
T Consensus         2 ~~~~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~----l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl   77 (159)
T 2hr2_A            2 MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAME----ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEAL   77 (159)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHH
Confidence            34444577899999999999999999999999999999    555521100 0011223459999999999999999999


Q ss_pred             HHHHHHHhh-------CCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          468 EACNKVLDA-------NPAHVKGL----YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       468 ~~~~~al~~-------~p~~~ka~----~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      .+|++||++       +|+++++|    |++|.++..+|++++|+.+|++|++++|++ ..+...+..+++..+
T Consensus        78 ~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d-~~~~~~~~~~~~~~~  150 (159)
T 2hr2_A           78 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER-KGETPGKERMMEVAI  150 (159)
T ss_dssp             HHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC-CSCCTTHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHH
Confidence            999999999       99999999    999999999999999999999999999988 567777777777665

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.77  E-value=1.8e-18  Score=143.41  Aligned_cols=94  Identities=24%  Similarity=0.326  Sum_probs=86.7

Q ss_pred             CCCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCC-CCCCCC
Q 008780          167 ETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPL-MPVVEG  244 (554)
Q Consensus       167 ~~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~-~~~ip~  244 (554)
                      ..++.||.|++||++++.||++|+++.. ++|+.|.+|.++++|||+++|.+|++|++++|.|||+++||+.+ ++.||+
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~   83 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPG   83 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBTTTBCT
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCc
Confidence            6789999999999999899999999864 68999999999999999999999999999999999999999864 356999


Q ss_pred             cceEEEEEeeeeeeee
Q 008780          245 CEEVHFEVELVHLIQV  260 (554)
Q Consensus       245 ~~~l~~~v~l~~~~~~  260 (554)
                      +++|+|+|+|+++.+.
T Consensus        84 ~~~l~f~v~l~~v~~~   99 (102)
T 2pbc_A           84 GATLVFEVELLKIERR   99 (102)
T ss_dssp             TCCEEEEEEEEEEGGG
T ss_pred             CCeEEEEEEEEEeccc
Confidence            9999999999999653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.77  E-value=1.9e-17  Score=170.33  Aligned_cols=155  Identities=26%  Similarity=0.449  Sum_probs=127.9

Q ss_pred             CChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC-CCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHH
Q 008780          389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  467 (554)
Q Consensus       389 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~-p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~  467 (554)
                      .+.++.+..+..++.+|+.+++.|+|++|+..|++|++++.... ..+.++..........+++|+|.||+++++|++|+
T Consensus       214 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  293 (370)
T 1ihg_A          214 KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAV  293 (370)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence            35788899999999999999999999999999999999654321 01112222344556789999999999999999999


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcc
Q 008780          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKGCLT  546 (554)
Q Consensus       468 ~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f~  546 (554)
                      .+|++||+++|+++++|+++|.+|..++++++|+.+|++|++++|++ ..++..|..+...+. .+++++  ..|++||+
T Consensus       294 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~-~~~~~~l~~~~~~~~~~~~a~k--~~~~kmf~  370 (370)
T 1ihg_A          294 DSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAIQAELLKVKQKIKAQKDKEK--AAYAKMFA  370 (370)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHH--CCC-----
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHH--HHHHHhhC
Confidence            99999999999999999999999999999999999999999999998 678888888888777 555555  78898884

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.76  E-value=2.1e-17  Score=153.93  Aligned_cols=169  Identities=22%  Similarity=0.255  Sum_probs=129.4

Q ss_pred             EEEEEcccccCCCCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChh-----HHHHHhhhHH
Q 008780          373 WEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE-----EGKVFVGKRN  447 (554)
Q Consensus       373 ~~ieL~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~e-----e~~~~~~~~~  447 (554)
                      ....+..++...+.|.++.++....+..+...|+.++..|+|.+|+..|++|+.    +.|.+.+     .......+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~~~~~~   88 (198)
T 2fbn_A           13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD----FFIHTEEWDDQILLDKKKNIEI   88 (198)
T ss_dssp             ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTTTCTTCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHhcccccchhhHHHHHHHHHH
Confidence            334556677888899999999999999999999999999999999999999999    5554431     1112233346


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      .+++|+|.||.++++|++|+.+|++++.++|.++.+++++|.++..++++++|+..|+++++++|++ ..+...+..+..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~  167 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN-LDIRNSYELCVN  167 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999999998 678888888887


Q ss_pred             HHH-HHHHHHHHHHHHhhcccc
Q 008780          528 QRQ-VKLKVRLENSLKGCLTRS  548 (554)
Q Consensus       528 ~~~-~~~~~~~~~~y~~~f~~~  548 (554)
                      ... ..+..+  ..|+++|+..
T Consensus       168 ~~~~~~~~~~--~~~~~~f~~~  187 (198)
T 2fbn_A          168 KLKEARKKDK--LTFGGMFDKG  187 (198)
T ss_dssp             HHHHHHC---------------
T ss_pred             HHHHHHHHHH--HHHHHHhccc
Confidence            776 455554  7899999864

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.70  E-value=1.4e-16  Score=137.59  Aligned_cols=115  Identities=21%  Similarity=0.354  Sum_probs=103.5

Q ss_pred             hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (554)
Q Consensus       394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (554)
                      ..+.|..+++.|+.+|++|+|++|+..|++|++    ++|.+           ..+|+|+|.||+++++|++|+.+|+++
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~----~~p~~-----------~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE----LDPSN-----------ITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            456788999999999999999999999999999    88887           789999999999999999999999999


Q ss_pred             HhhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          474 LDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       474 l~~~p~~-------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      ++++|++       +++|+++|.++..++++++|+..|++++.++|+  ++....|..+
T Consensus        69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~--~~~~~~l~~l  125 (127)
T 4gcn_A           69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD--PELVKKVKEL  125 (127)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC--HHHHHHHHHH
T ss_pred             HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC--HHHHHHHHHh
Confidence            9998876       468999999999999999999999999999986  3455555444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.68  E-value=8.3e-16  Score=131.85  Aligned_cols=116  Identities=26%  Similarity=0.405  Sum_probs=107.7

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+..+|+.+++.|+|++|+..|+++++    +.|.+           ..+++++|.||.++++|++|+.++++++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPED-----------ARGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            578899999999999999999999999999    88887           689999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHH
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD------KSSEPDATAALSKLKKQ  528 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~------P~~~~~~~~~l~~l~~~  528 (554)
                      +|+++.+|+++|.++..+|++++|+..|+++++++      |++ ..+...+..+..+
T Consensus        68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~-~~~~~~l~~~~~~  124 (126)
T 3upv_A           68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA-REIDQLYYKASQQ  124 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH-HHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhH-HHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999      876 6677777766554

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.66  E-value=1.5e-15  Score=135.68  Aligned_cols=84  Identities=25%  Similarity=0.398  Sum_probs=75.7

Q ss_pred             CCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCC
Q 008780           44 TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVA  123 (554)
Q Consensus        44 ~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~  123 (554)
                      .++.||.|.+||++++.||++|++|+.    .+.|+.|.+|.+++++||+++|.+|++|+++.|.|||+++||..     
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~----~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~-----   94 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRN----NGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVP-----   94 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCC-----
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC-----
Confidence            478999999999999999999999986    55799999999999999999999999999999999999999976     


Q ss_pred             CCCCCCCCCceEEEEEEEee
Q 008780          124 APSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus       124 ~~~~ip~~~~l~~~v~l~~~  143 (554)
                             +..++..|..-.+
T Consensus        95 -------~~~lv~~vp~~~f  107 (169)
T 4dt4_A           95 -------SPDLIQYFSRREF  107 (169)
T ss_dssp             -------CGGGEEEEEGGGG
T ss_pred             -------ChHHEEEeCHHHC
Confidence                   4577777765555

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.64  E-value=4.4e-15  Score=132.29  Aligned_cols=105  Identities=11%  Similarity=0.145  Sum_probs=100.7

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      .+.+..+...|..+++.|+|++|+..|++++.    ++|.+           ..+|+++|.||..+|+|++|+.+|++++
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~----~~P~~-----------~~~~~~lg~~~~~~g~~~~Ai~~~~~al   97 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI----YDFYN-----------VDYIMGLAAIYQIKEQFQQAADLYAVAF   97 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            44677899999999999999999999999999    89988           7899999999999999999999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +++|+++.+|+++|.+|..+|++++|+..|++|++++|++
T Consensus        98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A           98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            9999999999999999999999999999999999999985

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.62  E-value=1.7e-14  Score=127.47  Aligned_cols=83  Identities=20%  Similarity=0.314  Sum_probs=73.5

Q ss_pred             CCCCCCEEEEEEEEEec-CCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCC
Q 008780           44 TPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPV  122 (554)
Q Consensus        44 ~~~~gd~V~~~y~~~~~-~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~  122 (554)
                      .++.||.|++||++++. +|++|++|+.     ..|+.|.+|.+++++||+++|.+|++|+++.|.|||+.+||..+   
T Consensus         6 ~i~~gd~V~v~Y~g~~~~dG~~fdss~~-----~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~---   77 (151)
T 2kr7_A            6 LESIKQAALIEYEVREQGSSIVLDSNIS-----KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE---   77 (151)
T ss_dssp             CTTSCCEEEEEEEEEESSCSCEEEESTT-----TCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC---
T ss_pred             CCCCCCEEEEEEEEEECCCCCEEEeCCC-----CcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC---
Confidence            37899999999999987 9999999984     46999999999999999999999999999999999999999763   


Q ss_pred             CCCCCCCCCCceEEEEEEEee
Q 008780          123 AAPSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus       123 ~~~~~ip~~~~l~~~v~l~~~  143 (554)
                               ..+++.|....+
T Consensus        78 ---------~~~v~~v~~~~f   89 (151)
T 2kr7_A           78 ---------SSYLQEVPRDQF   89 (151)
T ss_dssp             ---------SCEEEEEEGGGG
T ss_pred             ---------cceEEEEcHHHc
Confidence                     467777655544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.62  E-value=7.5e-15  Score=132.20  Aligned_cols=122  Identities=19%  Similarity=0.311  Sum_probs=108.6

Q ss_pred             hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (554)
Q Consensus       394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (554)
                      ....+..+..+|+.+++.|+|++|+..|+++++    +.|.+           ..+++++|.||+++++|++|+.+++++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~a   71 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALS----IAPAN-----------PIYLSNRAAAYSASGQHEKAAEDAELA   71 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCcC-----------HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            345788999999999999999999999999999    78887           789999999999999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHH
Q 008780          474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP-DATAALSKLKKQRQ  530 (554)
Q Consensus       474 l~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~-~~~~~l~~l~~~~~  530 (554)
                      ++++|+++.+|+++|.++..+|++++|+.+|+++++++|++.. .....+..++.++.
T Consensus        72 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~  129 (164)
T 3sz7_A           72 TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIE  129 (164)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998832 14445555554443

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.60  E-value=6.3e-15  Score=130.44  Aligned_cols=86  Identities=24%  Similarity=0.292  Sum_probs=72.7

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccC---------CCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCcc
Q 008780           45 PSDGDQVAYHCTVRTLDGVIVESTRSE---------YGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHY  115 (554)
Q Consensus        45 ~~~gd~V~~~y~~~~~~g~~~~st~~~---------~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~y  115 (554)
                      ++.||.|++||++++ ||++|++|+..         .+..+.|+.|.+|.+++++||++||.+|++|++++|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY   80 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence            578999999999999 99999999851         00013699999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780          116 GEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus       116 g~~~~~~~~~~~ip~~~~l~~~v~l~~~  143 (554)
                      |..+            ..++..|..-.+
T Consensus        81 G~~~------------~~~V~~v~~~~f   96 (157)
T 3pr9_A           81 GKRD------------PSKIKLIPLSEF   96 (157)
T ss_dssp             CCCC------------GGGEEEEEHHHH
T ss_pred             CCCC------------hHhEEEcCHHHC
Confidence            9764            566776655544

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.60  E-value=9.5e-16  Score=128.56  Aligned_cols=84  Identities=14%  Similarity=0.213  Sum_probs=74.7

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (554)
Q Consensus        45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~  124 (554)
                      ++.||.|.++|++++ ||++|++++      +.|+.|.+|.+++++||+++|.+|++|+++.|.||+...||..+.+   
T Consensus        30 ~~~gD~V~v~Y~g~~-dG~~fdss~------~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~Yg~~~~~---   99 (113)
T 1hxv_A           30 LANGDIAIIDFTGIV-DNKKLASAS------AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKELQ---   99 (113)
T ss_dssp             CCSSEEEEEEEEEEE-TTEECSTTC------CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGGG---
T ss_pred             CCCCCEEEEEEEEEE-CCEEcccCC------ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchhhCcCCCC---
Confidence            899999999999998 999999886      3699999999999999999999999999999999733349977643   


Q ss_pred             CCCCCCCCceEEEEEEEeee
Q 008780          125 PSTFPKDEELHFEIEMIDFA  144 (554)
Q Consensus       125 ~~~ip~~~~l~~~v~l~~~~  144 (554)
                            +++++|+|+|++++
T Consensus       100 ------g~~l~F~V~l~~Vk  113 (113)
T 1hxv_A          100 ------SKPVTFEVVLKAIK  113 (113)
T ss_dssp             ------SCCCEEEEEECCBC
T ss_pred             ------CCEEEEEEEEEEEC
Confidence                  79999999998863

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.58  E-value=1.3e-14  Score=130.43  Aligned_cols=70  Identities=17%  Similarity=0.115  Sum_probs=66.5

Q ss_pred             CCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCC
Q 008780          169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPL  238 (554)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~  238 (554)
                      ++.||.|+++|++++.||++|+|+..++|+.|.+|.++++|||+++|.+|++|++++|.|||+.+||..+
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~   72 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCSSSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccCCcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC
Confidence            6789999999999988999999998779999999999999999999999999999999999999999864

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.57  E-value=2.2e-15  Score=133.28  Aligned_cols=87  Identities=20%  Similarity=0.315  Sum_probs=73.6

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccCC--------C-CCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCcc
Q 008780           45 PSDGDQVAYHCTVRTLDGVIVESTRSEY--------G-GKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHY  115 (554)
Q Consensus        45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~--------~-~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~y  115 (554)
                      ++.||.|++||++++.||++|++|+.+.        . ....|+.|.+|.+++++||+++|.+|++|+++.|.|||+++|
T Consensus         2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY   81 (151)
T 1ix5_A            2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence            6899999999999988999999996200        0 023699999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780          116 GEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus       116 g~~~~~~~~~~~ip~~~~l~~~v~l~~~  143 (554)
                      |..+            ..+++.|.+..+
T Consensus        82 G~~~------------~~~v~~v~~~~f   97 (151)
T 1ix5_A           82 GNRN------------EMLIQKIPRDAF   97 (151)
T ss_dssp             CSCC------------STTBCCEETHHH
T ss_pred             CCCC------------ccEEEEEEHHHc
Confidence            9763            466777766666

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.57  E-value=3.8e-14  Score=125.71  Aligned_cols=116  Identities=14%  Similarity=0.231  Sum_probs=104.0

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      ..+..+...|..++..|+|++|+..|++++.    ++|.+           ..+++++|.|+..+|+|++|+.+|++++.
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCV----LDHYD-----------SRFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCccc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            4577788999999999999999999999999    88888           67899999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      ++|+++.+++++|.++..+|++++|+..|+++++++|++ +........+..
T Consensus        84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~  134 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX-PEFXELSTRVSS  134 (148)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-CcchHHHHHHHH
Confidence            999999999999999999999999999999999999987 333333333333

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.57  E-value=1.4e-14  Score=132.73  Aligned_cols=82  Identities=23%  Similarity=0.302  Sum_probs=72.3

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (554)
Q Consensus        45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~  124 (554)
                      ++.||+|+++|++++.||++|++|+.     ..|+.|.+|.+++++||+++|.+|++|+++.|+|||+++||..+     
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~-----~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~-----   72 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD-----   72 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECCT-----TSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC-----
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecCC-----CCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC-----
Confidence            68999999999999889999999984     46999999999999999999999999999999999999999763     


Q ss_pred             CCCCCCCCceEEEEEEEee
Q 008780          125 PSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus       125 ~~~ip~~~~l~~~v~l~~~  143 (554)
                             ..+++.|.+..+
T Consensus        73 -------~~lV~~vp~~~f   84 (196)
T 2kfw_A           73 -------ENLVQRVPKDVF   84 (196)
T ss_dssp             -------TTTCEEECGGGC
T ss_pred             -------hhhEEEEEHHHC
Confidence                   456666655444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.57  E-value=4.7e-14  Score=123.86  Aligned_cols=120  Identities=15%  Similarity=0.241  Sum_probs=106.5

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      ...+..+...|..+++.|+|++|+..|++++.    .+|.+           ..+++++|.||.++++|++|+.++++++
T Consensus        15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al   79 (142)
T 2xcb_A           15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCM----LDHYD-----------ARYFLGLGACRQSLGLYEQALQSYSYGA   79 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34567788999999999999999999999999    88888           7799999999999999999999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      .++|+++.+++++|.++..+|++++|+..|+++++++|++ +........+...+.
T Consensus        80 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A           80 LMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ-PAHEALAARAGAMLE  134 (142)
T ss_dssp             HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-GGGHHHHHHHHHHHH
T ss_pred             hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987 444444444444443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.56  E-value=2.9e-14  Score=126.77  Aligned_cols=113  Identities=14%  Similarity=0.105  Sum_probs=100.2

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      ....+...|+.+++.|+|++|+..|++|++    ++|.+           ..+|+++|.||.+++++++|+.++++++++
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~   94 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYIN----VQERD-----------PKAHRFLGLLYELEENTDKAVECYRRSVEL   94 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence            455667899999999999999999999999    88988           789999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCChHHHHHHHHHH
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRD-FEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~-~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      +|+++.+|+++|.++..++++++|... +++|++++|+| +.+...+..+
T Consensus        95 ~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~-~~~~~l~~~l  143 (150)
T 4ga2_A           95 NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS-PAVYKLKEQL  143 (150)
T ss_dssp             CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC-HHHHHHHHHH
Confidence            999999999999999999999887765 59999999998 5565554444

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.55  E-value=5.1e-15  Score=124.13  Aligned_cols=84  Identities=21%  Similarity=0.196  Sum_probs=74.3

Q ss_pred             CCCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEe-CCccCCCCCCCCCCCc
Q 008780          167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT-SQYLTPSPLMPVVEGC  245 (554)
Q Consensus       167 ~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~-~~~~~g~~~~~~ip~~  245 (554)
                      ..++.||.|+++|++++ ||++|+++. ++|+.|.+|.++++|||+++|.+|++|++++|.|+ |+. ||...    .++
T Consensus        28 ~~~~~gD~V~v~Y~g~~-dG~~fdss~-~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~----~~g  100 (113)
T 1hxv_A           28 KKLANGDIAIIDFTGIV-DNKKLASAS-AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKE----LQS  100 (113)
T ss_dssp             -CCCSSEEEEEEEEEEE-TTEECSTTC-CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSG----GGS
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEcccCC-ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCC----CCC
Confidence            46889999999999998 999999884 78999999999999999999999999999999996 554 88653    256


Q ss_pred             ceEEEEEeeeee
Q 008780          246 EEVHFEVELVHL  257 (554)
Q Consensus       246 ~~l~~~v~l~~~  257 (554)
                      ++++|+|+|+++
T Consensus       101 ~~l~F~V~l~~V  112 (113)
T 1hxv_A          101 KPVTFEVVLKAI  112 (113)
T ss_dssp             CCCEEEEEECCB
T ss_pred             CEEEEEEEEEEE
Confidence            899999999886

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.55  E-value=2.8e-14  Score=128.25  Aligned_cols=70  Identities=23%  Similarity=0.326  Sum_probs=65.9

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCC
Q 008780           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDD  119 (554)
Q Consensus        45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~  119 (554)
                      ++.||.|+++|++++.+|++|++|+.     ..|+.|.+|.+++++||+++|.+|++|+++.|.|||+.+||..+
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~-----~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~   72 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCS-----SSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccC-----CcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC
Confidence            67899999999999889999999984     46999999999999999999999999999999999999999874

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.55  E-value=5.4e-14  Score=121.76  Aligned_cols=118  Identities=26%  Similarity=0.433  Sum_probs=107.6

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..++..|+|++|+..|++++.    ..|.+           ..+++++|.|+..+++|++|+.++++++.+
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   72 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLV-----------AVYYTNRALCYLKMQQPEQALADCRRALEL   72 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh----hCcCc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            367889999999999999999999999999    78877           679999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHHHH
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS-----SEPDATAALSKLKKQRQ  530 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~-----~~~~~~~~l~~l~~~~~  530 (554)
                      +|+++.+++++|.++..+|++++|+..|+++++++|+     + ..+...+..+..+..
T Consensus        73 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~-~~~~~~l~~~~~~~~  130 (137)
T 3q49_B           73 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-DDIPSALRIAKKKRW  130 (137)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCT-THHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHH-HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987     4 466767776665554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.53  E-value=8.7e-14  Score=154.49  Aligned_cols=138  Identities=17%  Similarity=0.235  Sum_probs=111.8

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      .+.+..+.++|+.+.++|+|++|+..|++|++    ++|.+           ..+++|+|.+|.++|++++|+.++++|+
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~----l~P~~-----------~~a~~nLg~~l~~~g~~~eA~~~~~~Al   70 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEF-----------AAAHSNLASVLQQQGKLQEALMHYKEAI   70 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45788899999999999999999999999999    88887           6788888888888888888888888888


Q ss_pred             hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      +++|+++.+|+++|.++..+|++++|++.|++|++++|++ ..+...|..+...+...+++.  ..|++.+...|+
T Consensus        71 ~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-~~a~~~Lg~~~~~~g~~~eAi--~~~~~Al~l~P~  143 (723)
T 4gyw_A           71 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-ADAHSNLASIHKDSGNIPEAI--ASYRTALKLKPD  143 (723)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHCSC
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHH--HHHHHHHHhCCC
Confidence            8888888888888888888888888888888888888887 566666666666555344444  567776665543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.53  E-value=1.7e-13  Score=128.71  Aligned_cols=124  Identities=15%  Similarity=0.125  Sum_probs=102.0

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHH-----HhhhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV-----FVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~-----~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  472 (554)
                      +..+..+|..++..|+|++|+..|++++.    ++|.+.+-.-.     .......+++++|.||.++|+|++|+..+++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~   79 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIA----LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE   79 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            56778899999999999999999999999    67655210000     0011122334499999999999999999999


Q ss_pred             HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       473 al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      +++++|+++.+++++|.++..+|++++|+.+|+++++++|++ ..+...+..+.
T Consensus        80 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~  132 (208)
T 3urz_A           80 LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-LAANIFLGNYY  132 (208)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998 66666666554

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.52  E-value=2e-14  Score=134.86  Aligned_cols=74  Identities=26%  Similarity=0.323  Sum_probs=65.8

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccC---------CCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCcc
Q 008780           45 PSDGDQVAYHCTVRTLDGVIVESTRSE---------YGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHY  115 (554)
Q Consensus        45 ~~~gd~V~~~y~~~~~~g~~~~st~~~---------~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~y  115 (554)
                      ++.||.|.+||++++ ||++|++|+..         .+..+.|+.|.+|.+++++||+.||.+|++|+++.|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY   80 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence            578999999999999 99999999851         00113699999999999999999999999999999999999999


Q ss_pred             CCCC
Q 008780          116 GEDD  119 (554)
Q Consensus       116 g~~~  119 (554)
                      |..+
T Consensus        81 Ge~~   84 (231)
T 3prb_A           81 GKRD   84 (231)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9865

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.52  E-value=3.7e-14  Score=132.97  Aligned_cols=69  Identities=22%  Similarity=0.144  Sum_probs=64.3

Q ss_pred             CCCCceEEEEEEEEeCCCcEEEecCC--------------CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccC
Q 008780          169 PRAPYEVKAWISAKTGDGKLILSHRE--------------GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT  234 (554)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~~--------------~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~  234 (554)
                      ++.||.|++||++++ ||++|+|+..              ++|+.|.+|.|+++|||+++|.+|++|+++++.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY   80 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence            578999999999999 9999999864              3799999999999999999999999999999999999999


Q ss_pred             CCCC
Q 008780          235 PSPL  238 (554)
Q Consensus       235 g~~~  238 (554)
                      |..+
T Consensus        81 Ge~~   84 (231)
T 3prb_A           81 GKRD   84 (231)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9743

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.51  E-value=1.4e-12  Score=116.18  Aligned_cols=119  Identities=27%  Similarity=0.461  Sum_probs=108.6

Q ss_pred             hhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 008780          391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  470 (554)
Q Consensus       391 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  470 (554)
                      .....+.+..+...|..++..|+|.+|+..|++++.    ..|.+           ..+++++|.|+..+++|++|+.++
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~   70 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRSLAYLRTECYGYALGDA   70 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence            356678899999999999999999999999999999    77776           678999999999999999999999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       471 ~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      .+++.++|.++.+++++|.++..+|++++|+..|+++++++|++ ..+...+..+
T Consensus        71 ~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~  124 (166)
T 1a17_A           71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQEC  124 (166)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998 4555444444

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.51  E-value=4.6e-13  Score=111.71  Aligned_cols=114  Identities=26%  Similarity=0.461  Sum_probs=105.1

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..++..|+|++|+..|++++.    ..|.+           ..++.++|.|+..+++|++|+..+++++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHN-----------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            567889999999999999999999999999    77776           678999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      +|.+..+++++|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~  116 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN-PQLKEGLQNME  116 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHhh
Confidence            99999999999999999999999999999999999998 56666665554

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.50  E-value=7.4e-14  Score=124.75  Aligned_cols=83  Identities=18%  Similarity=0.256  Sum_probs=72.8

Q ss_pred             CCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcc
Q 008780          168 TPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE  246 (554)
Q Consensus       168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~  246 (554)
                      .++.||.|++||++++.||++|+|+.. ++|+.|.+|.++++|||+++|.+|++||+++|.|||+++||+.+       .
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~-------~   96 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPS-------P   96 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCC-------G
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC-------h
Confidence            578999999999999999999999864 58999999999999999999999999999999999999999764       3


Q ss_pred             eEEEEEeeeee
Q 008780          247 EVHFEVELVHL  257 (554)
Q Consensus       247 ~l~~~v~l~~~  257 (554)
                      .++..|....|
T Consensus        97 ~lv~~vp~~~f  107 (169)
T 4dt4_A           97 DLIQYFSRREF  107 (169)
T ss_dssp             GGEEEEEGGGG
T ss_pred             HHEEEeCHHHC
Confidence            44555554444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.50  E-value=3e-14  Score=126.64  Aligned_cols=111  Identities=11%  Similarity=0.060  Sum_probs=96.4

Q ss_pred             hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHH
Q 008780          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  483 (554)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka  483 (554)
                      .|..+..++++++|+..|++++.    ..|..           ...++++|.+|+++++|++|+.+++++++++|+++.+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~----~~p~~-----------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a   67 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTP----SPRQK-----------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA   67 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSC----SHHHH-----------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcc----cCccc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            57888899999999999999988    54433           5678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       484 ~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      |+.+|.++..+|++++|+..|++|++++|++ ..+...+..+.....
T Consensus        68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~  113 (150)
T 4ga2_A           68 HRFLGLLYELEENTDKAVECYRRSVELNPTQ-KDLVLKIAELLCKND  113 (150)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999998 677777777665554

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.50  E-value=2.9e-13  Score=119.54  Aligned_cols=84  Identities=13%  Similarity=0.060  Sum_probs=75.2

Q ss_pred             CCCCCCceEEEEEEEEeC-CCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCc
Q 008780          167 ETPRAPYEVKAWISAKTG-DGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGC  245 (554)
Q Consensus       167 ~~~~~g~~V~v~y~~~~~-~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~  245 (554)
                      +.++.||.|++||++++. ||++|+|+..++|+.|.+|.++++|||+++|.+|++|++++|.|||+.+||..+       
T Consensus         5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~-------   77 (151)
T 2kr7_A            5 DLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE-------   77 (151)
T ss_dssp             CCTTSCCEEEEEEEEEESSCSCEEEESTTTCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC-------
T ss_pred             cCCCCCCEEEEEEEEEECCCCCEEEeCCCCcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC-------
Confidence            567899999999999988 999999998779999999999999999999999999999999999999999763       


Q ss_pred             ceEEEEEeeeee
Q 008780          246 EEVHFEVELVHL  257 (554)
Q Consensus       246 ~~l~~~v~l~~~  257 (554)
                      ..+++.+....+
T Consensus        78 ~~~v~~v~~~~f   89 (151)
T 2kr7_A           78 SSYLQEVPRDQF   89 (151)
T ss_dssp             SCEEEEEEGGGG
T ss_pred             cceEEEEcHHHc
Confidence            346666666665

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.49  E-value=7.1e-13  Score=117.61  Aligned_cols=77  Identities=18%  Similarity=0.315  Sum_probs=69.8

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (554)
Q Consensus        45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~  124 (554)
                      ++.||.|+++|+++ .||++|++|+         +.|.+|.+++++||+++|.+|++|+++.|.|||+.+||..      
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~---------~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~------   66 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE---------LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPH------   66 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE---------EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCC------
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE---------EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCC------
Confidence            57899999999999 8999999774         7899999999999999999999999999999999999976      


Q ss_pred             CCCCCCCCceEEEEEEEee
Q 008780          125 PSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus       125 ~~~ip~~~~l~~~v~l~~~  143 (554)
                            +..+++.|.+..+
T Consensus        67 ------~~~lv~~v~~~~f   79 (158)
T 3cgm_A           67 ------DPEGVQVVPLSAF   79 (158)
T ss_dssp             ------CGGGEEEEEGGGS
T ss_pred             ------CcceEEEEEHHHC
Confidence                  4578888877666

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.47  E-value=2.4e-13  Score=116.12  Aligned_cols=100  Identities=11%  Similarity=0.028  Sum_probs=91.5

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  479 (554)
                      .+...|..+++.|++++|+..|++++.    .+|.+           ..+++++|.|+..+|++++|+..++++++++|+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~   83 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQ----KEPER-----------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   83 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            456889999999999999999999999    89988           789999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           84 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            99999999999999999999999999999999986

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.47  E-value=4.5e-14  Score=124.98  Aligned_cols=71  Identities=21%  Similarity=0.130  Sum_probs=65.5

Q ss_pred             CCCCceEEEEEEEEeCCCcEEEecCC--------------CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccC
Q 008780          169 PRAPYEVKAWISAKTGDGKLILSHRE--------------GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT  234 (554)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~~--------------~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~  234 (554)
                      ++.||.|++||++++ ||++|+|+..              ++|+.|.+|.++++|||+++|.+|++||+++|.|||+++|
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY   80 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence            678999999999999 9999999864              3799999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 008780          235 PSPLMP  240 (554)
Q Consensus       235 g~~~~~  240 (554)
                      |+.++.
T Consensus        81 G~~~~~   86 (157)
T 3pr9_A           81 GKRDPS   86 (157)
T ss_dssp             CCCCGG
T ss_pred             CCCChH
Confidence            986443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.46  E-value=1.2e-12  Score=124.14  Aligned_cols=134  Identities=13%  Similarity=0.172  Sum_probs=113.7

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCC-CChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP-QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p-~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      ..+...|..++..|+|++|+..|+++++    +.| .+           ..+++++|.|+..+++|++|+.++++++.++
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   72 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLK----LTNNQD-----------SVTAYNCGVCADNIKKYKEAADYFDIAIKKN   72 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTTTCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHh----ccCCCC-----------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence            6788999999999999999999999999    776 55           5688889999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDA-------TAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~-------~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      |+++.+++.+|.++..+|++++|+..|+++++++|++ ...       ...+..+.......+++.  ..|++.+...|.
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~~~~~~~~A~--~~~~~al~~~p~  149 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN-ATIEKLYAIYYLKEGQKFQQAGNIEKAE--ENYKHATDVTSK  149 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHTTCHHHHH--HHHHHHTTSSCH
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHhHHHHHhccHHHHH--HHHHHHHhcCCC
Confidence            9999999999999999999999999999999999998 423       333444443333334444  788888877665

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.46  E-value=3.4e-12  Score=108.36  Aligned_cols=120  Identities=26%  Similarity=0.388  Sum_probs=107.6

Q ss_pred             hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008780          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  471 (554)
Q Consensus       392 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  471 (554)
                      ......+..+...|..++..++|+.|+..|++++.    ..|.+           ..++.++|.|+..++++++|+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~   70 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIE----LNPAN-----------AVYFCNRAAAYSKLGNYAGAVQDCE   70 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhhchHHHHHHHH
Confidence            44566788999999999999999999999999999    67776           6789999999999999999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       472 ~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      +++..+|.+..+++.+|.++..++++++|+..|+++++++|++ ..+...+..+..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~  125 (131)
T 2vyi_A           71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN-ETYKSNLKIAEL  125 (131)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHH
T ss_pred             HHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc-hHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988 555555555544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.45  E-value=1.1e-12  Score=112.16  Aligned_cols=117  Identities=26%  Similarity=0.461  Sum_probs=105.6

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      ......+...|..++..++|++|+..|+++++    ..|.+           ..+++++|.|+..++++++|+.++++++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~a~   77 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIK----RNPKD-----------AKLYSNRAACYTKLLEFQLALKDCEECI   77 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34577889999999999999999999999999    77776           6789999999999999999999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      +++|.+..+++++|.++..++++++|+..|+++++++|++ ..+...+..+..
T Consensus        78 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~  129 (133)
T 2lni_A           78 QLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC-KEAADGYQRCMM  129 (133)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG-THHHHHHHHHHH
T ss_pred             HhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987 455555555543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.7e-12  Score=113.33  Aligned_cols=117  Identities=31%  Similarity=0.491  Sum_probs=104.9

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..++..|+|.+|+..|+++++    ..|.++        ....+++++|.||..+++|++|+.++++++.+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALG----LDATPQ--------DQAVLHRNRAACHLKLEDYDKAETEASKAIEK   94 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT----SCCCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----Hcccch--------HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            467888999999999999999999999999    777531        23678999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      +|.++.+++++|.++..++++++|+..|+++++++|++ ..++..+..+.
T Consensus        95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~  143 (148)
T 2dba_A           95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN-KVFQEALRNIS  143 (148)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHH
Confidence            99999999999999999999999999999999999998 56666665553

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.45  E-value=2.9e-13  Score=119.64  Aligned_cols=104  Identities=19%  Similarity=0.253  Sum_probs=92.4

Q ss_pred             hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhhCCC
Q 008780          410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC----------RKSIEACNKVLDANPA  479 (554)
Q Consensus       410 ~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~----------~~A~~~~~~al~~~p~  479 (554)
                      +.+.|++|+..|++|++    ++|.+           ..+++|+|.|+..++++          ++|+..|++||+++|+
T Consensus        14 r~~~feeA~~~~~~Ai~----l~P~~-----------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~   78 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYK----SNPLD-----------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK   78 (158)
T ss_dssp             HHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHhHHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence            45679999999999999    89998           78999999999999876          5999999999999999


Q ss_pred             ChHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780          480 HVKGLYRRGMAYMALG-----------EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~-----------~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~  529 (554)
                      +..+|+++|.+|..+|           +|++|+.+|++|++++|++ ...+..+....+..
T Consensus        79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~-~~y~~al~~~~ka~  138 (158)
T 1zu2_A           79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN-THYLKSLEMTAKAP  138 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHTHH
T ss_pred             cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHhCH
Confidence            9999999999999985           8999999999999999998 56666665554443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.44  E-value=9.3e-13  Score=124.48  Aligned_cols=132  Identities=15%  Similarity=0.180  Sum_probs=77.7

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc-----------cCHHHHHH
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-----------GECRKSIE  468 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl-----------~~~~~A~~  468 (554)
                      .+...|..+++.|++++|+..|+++++    ++|.+           ..+++++|.++.++           |++++|+.
T Consensus        41 a~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~  105 (217)
T 2pl2_A           41 ALYWLARTQLKLGLVNPALENGKTLVA----RTPRY-----------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALS  105 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHH
Confidence            344445555555555555555555555    44444           45666666666666           66666666


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008780          469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRS  548 (554)
Q Consensus       469 ~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~  548 (554)
                      .++++++++|+++.+++.+|.++..+|++++|+..|++|++++ ++ ..+...+..+.......+.+.  ..|++.+...
T Consensus       106 ~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~~la~~~~~~g~~~~A~--~~~~~al~~~  181 (217)
T 2pl2_A          106 VLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT-PEIRSALAELYLSMGRLDEAL--AQYAKALEQA  181 (217)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHHHTCHHHHH--HHHHHHHHHS
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc-hHHHHHHHHHHHHcCCHHHHH--HHHHHHHHhC
Confidence            6666666666666666666666666666666666666666666 44 455555555554444333333  5666665554


Q ss_pred             cc
Q 008780          549 LG  550 (554)
Q Consensus       549 ~~  550 (554)
                      |+
T Consensus       182 P~  183 (217)
T 2pl2_A          182 PK  183 (217)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.44  E-value=2.1e-12  Score=121.95  Aligned_cols=94  Identities=14%  Similarity=0.114  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      ...+++++|.++..+|++++|+..++++++++ +++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+
T Consensus       117 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~  194 (217)
T 2pl2_A          117 YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD-LDLRVRYASA  194 (217)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHH
Confidence            45689999999999999999999999999999 999999999999999999999999999999999998 5666666666


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 008780          526 KKQRQVKLKVRLENSLKG  543 (554)
Q Consensus       526 ~~~~~~~~~~~~~~~y~~  543 (554)
                      .......+++.  ..|++
T Consensus       195 ~~~~g~~~~A~--~~~~~  210 (217)
T 2pl2_A          195 LLLKGKAEEAA--RAAAL  210 (217)
T ss_dssp             HTC---------------
T ss_pred             HHHccCHHHHH--HHHHH
Confidence            55554333333  44544

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.43  E-value=2.8e-12  Score=117.09  Aligned_cols=146  Identities=17%  Similarity=0.255  Sum_probs=112.5

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHH-----------------------HHhhhHHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-----------------------VFVGKRNLLHLNVA  454 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~-----------------------~~~~~~~~~~~nla  454 (554)
                      +..+.+.|+.++++|+|++|+..|++|++    ++|.+.+-..                       ........++.++|
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLK----ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG   80 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            56778999999999999999999999999    7887643110                       00111234667777


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q 008780          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLK  534 (554)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~  534 (554)
                      .++...+++..|+..+.+++.++|.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......++
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF-IRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh-hhHHHHHHHHHHHCCCHHH
Confidence            788888888888888888888889999999999999999999999999999999999988 6677777777766664455


Q ss_pred             HHHHHHHHhhcccccc
Q 008780          535 VRLENSLKGCLTRSLG  550 (554)
Q Consensus       535 ~~~~~~y~~~f~~~~~  550 (554)
                      +.  ..|++.+...|.
T Consensus       160 A~--~~~~~al~~~p~  173 (184)
T 3vtx_A          160 AV--KYFKKALEKEEK  173 (184)
T ss_dssp             HH--HHHHHHHHTTHH
T ss_pred             HH--HHHHHHHhCCcc
Confidence            55  678887766553

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.43  E-value=2.1e-12  Score=110.28  Aligned_cols=115  Identities=17%  Similarity=0.199  Sum_probs=100.8

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  479 (554)
                      .+...|..++..|+|++|+..|++++.    ..|.+.        ....+++++|.|+.++|+|++|+..+++++..+|+
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~   71 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLE----LYPNGV--------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT   71 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSST--------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH----HCCCCc--------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            456789999999999999999999999    677652        11368999999999999999999999999999999


Q ss_pred             C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          480 H---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       480 ~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      +   +.+++++|.++..+|++++|+..|+++++..|++ ..+...+..+..
T Consensus        72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~a~~~l~~  121 (129)
T 2xev_A           72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS-DAARVAQERLQS  121 (129)
T ss_dssp             STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-hHHHHHHHHHHH
Confidence            9   8999999999999999999999999999999998 555555555543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.43  E-value=7.5e-13  Score=136.33  Aligned_cols=118  Identities=9%  Similarity=0.019  Sum_probs=70.5

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC-HHHHHHHHHHHHh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEACNKVLD  475 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~-~~~A~~~~~~al~  475 (554)
                      .+..+...|..+.+.|++++|+..|++||.    ++|.+           ..+|+++|.++..+++ +++|+.+++++|+
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~----l~P~~-----------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~  160 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAAN-----------YTVWHFRRVLLKSLQKDLHEEMNYITAIIE  160 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCccC-----------HHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence            455566666666677777777777777776    66665           4555566666666664 6666666666666


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      ++|++..+|+++|.++..+|++++|+.+|++|++++|+| ..++..+..+.....
T Consensus       161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-~~a~~~lg~~~~~~g  214 (382)
T 2h6f_A          161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-YHAWQHRQWVIQEFK  214 (382)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHT
T ss_pred             HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-HHHHHHHHHHHHHcC
Confidence            666666666666666666666666666666666666655 344444444444333

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.43  E-value=7.5e-13  Score=146.98  Aligned_cols=117  Identities=18%  Similarity=0.242  Sum_probs=108.0

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+.++|+.+.+.|++++|+..|++|++    ++|.+           ..+|+|+|.+|..+|++++|+.++++|++++
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~----l~P~~-----------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~  107 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIR----ISPTF-----------ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN  107 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999    89988           7899999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      |+++.+|+++|.+|..+|++++|+..|++|++++|++ ..+...|..+...+.
T Consensus       108 P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-~~a~~~L~~~l~~~g  159 (723)
T 4gyw_A          108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF-PDAYCNLAHCLQIVC  159 (723)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHhhhhhHHHhcc
Confidence            9999999999999999999999999999999999998 566666666655544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.42  E-value=3e-12  Score=108.78  Aligned_cols=118  Identities=22%  Similarity=0.371  Sum_probs=105.9

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      +.+..+...|..++..|+|++|+..|++++.    ..|.+           ..+++++|.|+..+++|++|+.++.+++.
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~   66 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTN-----------MTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh----cCCcc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            3567889999999999999999999999999    67776           67899999999999999999999999999


Q ss_pred             hCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          476 ANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       476 ~~p~~-------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      ++|.+       ..+++++|.++..+|++++|+..|+++++++|+  ..+...+..+.....
T Consensus        67 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--PDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHH
T ss_pred             hccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHH
Confidence            99877       999999999999999999999999999999994  566767776665554

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.41  E-value=5.3e-13  Score=122.32  Aligned_cols=72  Identities=17%  Similarity=0.098  Sum_probs=67.7

Q ss_pred             CCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCC
Q 008780          169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP  240 (554)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~  240 (554)
                      ++.||.|+|+|++++.||++|+|+...+|++|.+|.++++|+|+++|.+|++|++++|.|||+.+||+..+.
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~   74 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDEN   74 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECCTTSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTT
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecCCCCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCChh
Confidence            678999999999999899999999877999999999999999999999999999999999999999987543

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.41  E-value=2e-13  Score=120.65  Aligned_cols=72  Identities=15%  Similarity=0.156  Sum_probs=66.3

Q ss_pred             CCCCceEEEEEEEEeCCCcEEEecC--------------CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccC
Q 008780          169 PRAPYEVKAWISAKTGDGKLILSHR--------------EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT  234 (554)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~--------------~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~  234 (554)
                      ++.||.|++||++++.||++|+|+.              ..+|+.|.+|.++++|||+++|.+|++|+++++.|||+.+|
T Consensus         2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY   81 (151)
T 1ix5_A            2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence            6789999999999988999999985              34799999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 008780          235 PSPLMP  240 (554)
Q Consensus       235 g~~~~~  240 (554)
                      |+.++.
T Consensus        82 G~~~~~   87 (151)
T 1ix5_A           82 GNRNEM   87 (151)
T ss_dssp             CSCCST
T ss_pred             CCCCcc
Confidence            987544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.39  E-value=3.7e-12  Score=125.48  Aligned_cols=102  Identities=25%  Similarity=0.443  Sum_probs=97.8

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..++.+|+.+++.|+|++|+..|++|+.    ..|.+           ..+++|+|.||.++++|++|+.+++++++++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~   68 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLV-----------AVYYTNRALCYLKMQQPEQALADCRRALELD   68 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999    78887           7899999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      |+++++++++|.++..+|++++|+..|+++++++|++
T Consensus        69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999999865

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.37  E-value=3.8e-12  Score=131.04  Aligned_cols=116  Identities=8%  Similarity=0.039  Sum_probs=107.0

Q ss_pred             HHHHHHHhhhhhhhcCC-HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          397 EAEKIRVTGNRLFKEGK-FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~-~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      .+..+..+|..+...|+ +++|+..|++|+.    ++|.+           ..+|+++|.++.++|+|++|+.+|+++|+
T Consensus       130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~----l~P~~-----------~~a~~~~g~~~~~~g~~~eAl~~~~kal~  194 (382)
T 2h6f_A          130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIE----EQPKN-----------YQVWHHRRVLVEWLRDPSQELEFIADILN  194 (382)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcccCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            35677899999999997 9999999999999    89988           78999999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~  528 (554)
                      ++|++..+|+++|.++..+|++++|+.+|+++++++|++ ..++..+..+...
T Consensus       195 ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~-~~a~~~lg~~l~~  246 (382)
T 2h6f_A          195 QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN-NSVWNQRYFVISN  246 (382)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred             hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998 6677777766555

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.37  E-value=1e-11  Score=117.57  Aligned_cols=116  Identities=15%  Similarity=0.151  Sum_probs=102.7

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  478 (554)
                      ..+...|..++..|+|++|+..|++|++    ..|.+           ..++.++|.||..+++|++|+..++++++++|
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  107 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIK----KNYNL-----------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP  107 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCSH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHH----hCcch-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence            4556699999999999999999999999    88876           67999999999999999999999999999999


Q ss_pred             CCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHH
Q 008780          479 AHV-------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS--SEPDATAALSKLKKQRQ  530 (554)
Q Consensus       479 ~~~-------ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~~l~~l~~~~~  530 (554)
                      ++.       .+|+++|.++..+|++++|+..|++|++++|+  + ..+...+..+.....
T Consensus       108 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~~~~~  167 (228)
T 4i17_A          108 GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK-TDALYSLGVLFYNNG  167 (228)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH-HHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHHH
Confidence            999       77999999999999999999999999999998  6 455555555544433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.36  E-value=2.2e-12  Score=137.04  Aligned_cols=117  Identities=26%  Similarity=0.457  Sum_probs=107.0

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      .+.+..+..+|+.+++.|+|++|+..|++|++    +.|.+           ..+++|+|.||.++++|++|+.++++|+
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al   67 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRSLAYLRTECYGYALGDATRAI   67 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            35677788999999999999999999999999    78877           7899999999999999999999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      +++|+++.+++++|.++..+|++++|+..|++|++++|++ ..+...+..+..
T Consensus        68 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~l~~~~~  119 (477)
T 1wao_1           68 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNK  119 (477)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-TTHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988 456666666533

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.36  E-value=2.1e-11  Score=111.20  Aligned_cols=113  Identities=19%  Similarity=0.227  Sum_probs=90.7

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHH-----------------------HHHhhhHHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------------KVFVGKRNLLHLNVA  454 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~-----------------------~~~~~~~~~~~~nla  454 (554)
                      +..+...|..+++.|++++|+..+.+++.    ..|.+..-.                       .........++.++|
T Consensus        39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg  114 (184)
T 3vtx_A           39 VETLLKLGKTYMDIGLPNDAIESLKKFVV----LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLG  114 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            44566777777777777777777777776    444432100                       001111256789999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      .+|.++|+|++|+..++++++++|.++.+|+++|.+|..+|++++|+..|++|++++|++
T Consensus       115 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          115 LVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence            999999999999999999999999999999999999999999999999999999999975

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.35  E-value=4e-11  Score=100.70  Aligned_cols=113  Identities=27%  Similarity=0.490  Sum_probs=102.4

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+...|..++..+++++|+..|++++.    ..|.+           ..+++++|.++...+++++|+..+++++..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   73 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNN-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCc-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            56778899999999999999999999999    66766           5689999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      |.+..+++.+|.++..++++++|+..|+++++++|++ ..+...+..+.
T Consensus        74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~  121 (125)
T 1na0_A           74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNAK  121 (125)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence            9999999999999999999999999999999999988 55665555544

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.35  E-value=3.4e-12  Score=113.23  Aligned_cols=78  Identities=14%  Similarity=0.046  Sum_probs=70.0

Q ss_pred             CCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcceE
Q 008780          169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEV  248 (554)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~~l  248 (554)
                      ++.||.|+++|+++ .||++|+|+.    +.|.+|.++++|||+++|.+|++|++++|.|||+.+||..       +..+
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~-------~~~l   70 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE----LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPH-------DPEG   70 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE----EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCC-------CGGG
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE----EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCC-------Ccce
Confidence            57899999999999 9999999886    8999999999999999999999999999999999999976       3456


Q ss_pred             EEEEeeeeee
Q 008780          249 HFEVELVHLI  258 (554)
Q Consensus       249 ~~~v~l~~~~  258 (554)
                      ++.|.+..+.
T Consensus        71 v~~v~~~~f~   80 (158)
T 3cgm_A           71 VQVVPLSAFP   80 (158)
T ss_dssp             EEEEEGGGSC
T ss_pred             EEEEEHHHCC
Confidence            7777777664

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.34  E-value=1.5e-12  Score=110.11  Aligned_cols=93  Identities=19%  Similarity=0.166  Sum_probs=80.7

Q ss_pred             hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008780          410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  489 (554)
Q Consensus       410 ~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~  489 (554)
                      ..|+|++|+..|++|++    +.+.++        ....+++++|.||.++|+|++|+.+++++++++|+++.+++++|.
T Consensus         2 ~~g~~~~A~~~~~~al~----~~~~~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   69 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIA----SGLQGK--------DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM   69 (117)
T ss_dssp             -----CCCHHHHHHHHS----SCCCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHH----cCCCCc--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            36889999999999999    532221        126789999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          490 AYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       490 a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ++..+|++++|+..|+++++++|++
T Consensus        70 ~~~~~g~~~~A~~~~~~al~~~p~~   94 (117)
T 3k9i_A           70 VLYNLGRYEQGVELLLKIIAETSDD   94 (117)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            9999999999999999999999998

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.34  E-value=1.9e-11  Score=114.62  Aligned_cols=107  Identities=16%  Similarity=0.186  Sum_probs=92.0

Q ss_pred             HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChH
Q 008780          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (554)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k  482 (554)
                      ..|..+++.|+|++|+..|+++++    ++|.+           ..+++++|.++..+|++++|+.+++++++++|+++.
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~  123 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQ----KAPNN-----------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA  123 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            399999999999999999999999    89988           789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHc-----------------------------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          483 GLYRRGMAYMAL-----------------------------------GEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       483 a~~~~g~a~~~l-----------------------------------~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      +|+++|.+++..                                   ++|++|+.+|++|++++|++  .+...|..+.
T Consensus       124 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~--~~~~~l~~i~  200 (208)
T 3urz_A          124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST--EAQKTLDKIL  200 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH--HHHHHHHHHH
Confidence            998888776443                                   46788888888888888864  3444455543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.33  E-value=1.6e-11  Score=114.56  Aligned_cols=134  Identities=13%  Similarity=0.168  Sum_probs=107.6

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      ..+..+...|..++..|+|++|+..|++++.      + +           ..+++++|.||.++|+|++|+.++++++.
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------~-~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   65 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQD------P-H-----------SRICFNIGCMYTILKNMTEAEKAFTRSIN   65 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS------C-C-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC------C-C-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4566788999999999999999999998752      2 2           56899999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008780          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE---------------PDATAALSKLKKQRQVKLKVRLENS  540 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~---------------~~~~~~l~~l~~~~~~~~~~~~~~~  540 (554)
                      ++|.++.+++++|.++..+|++++|+..|++++++.|.+.               ..+...+..+.......+++.  ..
T Consensus        66 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--~~  143 (213)
T 1hh8_A           66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE--EQ  143 (213)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH--HH
T ss_pred             hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH--HH
Confidence            9999999999999999999999999999999999888762               145555555555544344444  66


Q ss_pred             HHhhccccc
Q 008780          541 LKGCLTRSL  549 (554)
Q Consensus       541 y~~~f~~~~  549 (554)
                      |++.+...|
T Consensus       144 ~~~al~~~p  152 (213)
T 1hh8_A          144 LALATSMKS  152 (213)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHHcCc
Confidence            777766554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.33  E-value=8.9e-13  Score=117.27  Aligned_cols=101  Identities=10%  Similarity=0.020  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ...++++|.+++++|+|++|+..+++++.++|+++.+|+.+|.++..+|+|++|+..|++|++++|++ ..++..+..+.
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-~~~~~~lg~~~  114 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-YTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-cHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999998 66777777777


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccc
Q 008780          527 KQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       527 ~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      ......+++.  ..|++.+...|+
T Consensus       115 ~~lg~~~eA~--~~~~~al~l~~~  136 (151)
T 3gyz_A          115 LRLKAPLKAK--ECFELVIQHSND  136 (151)
T ss_dssp             HHTTCHHHHH--HHHHHHHHHCCC
T ss_pred             HHcCCHHHHH--HHHHHHHHhCCC
Confidence            7666455555  678877665543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.32  E-value=1.3e-11  Score=101.90  Aligned_cols=100  Identities=14%  Similarity=0.193  Sum_probs=94.2

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  479 (554)
                      .+...|..++..|+|++|+..|+++++    ..|.+           ..++.++|.++..+++|++|+.+++++++++|.
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQ----LDPEE-----------SKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHH----hCcCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            456789999999999999999999999    77776           678999999999999999999999999999999


Q ss_pred             --ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 008780          480 --HVKGLYRRGMAYMAL-GEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       480 --~~ka~~~~g~a~~~l-~~~~~A~~~~~~al~l~P~~  514 (554)
                        +..+++.+|.++..+ |++++|+..|++++..+|++
T Consensus        73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence              999999999999999 99999999999999999975

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.30  E-value=1.3e-11  Score=106.13  Aligned_cols=101  Identities=14%  Similarity=0.126  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      +..+.|+|.+|++.|+|++|+.+++++++++|.++.+|+++|.++..+|++++|+.+|++|++++|++ ..+...+..+.
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~   91 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999998 67777777777


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccc
Q 008780          527 KQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       527 ~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      ..+...+++.  ..|++.+...|+
T Consensus        92 ~~~~~~~~A~--~~~~~al~l~P~  113 (126)
T 4gco_A           92 VAMREWSKAQ--RAYEDALQVDPS  113 (126)
T ss_dssp             HHTTCHHHHH--HHHHHHHHHCTT
T ss_pred             HHCCCHHHHH--HHHHHHHHHCcC
Confidence            7666445555  778888776664

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.30  E-value=5.9e-11  Score=100.80  Aligned_cols=134  Identities=22%  Similarity=0.346  Sum_probs=111.9

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  478 (554)
                      ..+...|..++..|++++|+..|++++.    ..|.+           ..++.++|.++...+++++|+..+++++..+|
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~   66 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPRS-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP   66 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHH----cCCcc-----------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence            3466789999999999999999999998    66665           56889999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       479 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      .+..+++.+|.++...|++++|+..|+++++++|.+ ..+...+..+.......+++.  ..|++++...|.
T Consensus        67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~--~~~~~~~~~~~~  135 (136)
T 2fo7_A           67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYYKQGDYDEAI--EYYQKALELDPR  135 (136)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHH--HHHHHHHHHSTT
T ss_pred             CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHccHHHHH--HHHHHHHccCCC
Confidence            999999999999999999999999999999999987 555555555554444334444  677777665543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.29  E-value=3.3e-11  Score=109.26  Aligned_cols=114  Identities=11%  Similarity=0.194  Sum_probs=101.6

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHH-HHHccCH--HHHHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC-LLKLGEC--RKSIEACNKVL  474 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~-~~kl~~~--~~A~~~~~~al  474 (554)
                      +..+...|..++..|+|++|+..|++++.    +.|.+           ..++.++|.+ +...+++  ++|+..+++++
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al  108 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQ----LRGEN-----------AELYAALATVLYYQASQHMTAQTRAMIDKAL  108 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHCSC-----------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            46788999999999999999999999999    77776           6789999999 8899999  99999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      +++|++..+++.+|.++..+|++++|+..|+++++++|++ ......+..+.+
T Consensus       109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~i~~  160 (177)
T 2e2e_A          109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR-INRTQLVESINM  160 (177)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-SCHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-ccHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987 444444444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.27  E-value=6.3e-11  Score=128.56  Aligned_cols=136  Identities=13%  Similarity=0.109  Sum_probs=119.4

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+...|..++..|+|++|+..|++|++    +.|.+           ..+++++|.+|..+|++++|+.+++++++++
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   87 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLA----LHPGH-----------PEAVARLGRVRWTQQRHAEAAVLLQQASDAA   87 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHT----TSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            56788999999999999999999999999    88887           6799999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccccccc
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR---QVKLKVRLENSLKGCLTRSLGK  551 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~---~~~~~~~~~~~y~~~f~~~~~~  551 (554)
                      |+++.+++++|.++..+|++++|+..|+++++++|++ ..+...+..+....   ...+++.  ..|++.+...|..
T Consensus        88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~g~~~~A~--~~~~~al~~~p~~  161 (568)
T 2vsy_A           88 PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE-PYITAQLLNWRRRLCDWRALDVLS--AQVRAAVAQGVGA  161 (568)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCTTHHHHH--HHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhccccHHHHH--HHHHHHHhcCCcc
Confidence            9999999999999999999999999999999999998 66777777776666   4334444  6777777666543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.26  E-value=1.7e-10  Score=111.56  Aligned_cols=105  Identities=21%  Similarity=0.241  Sum_probs=99.7

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      ..+..+...|..++..|++++|+..|++++.    +.|.+           ..++.++|.++..+|+|++|+.+++++++
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~  105 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALA----IRPDM-----------PEVFNYLGIYLTQAGNFDAAYEAFDSVLE  105 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            4577888999999999999999999999999    78877           67899999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~  515 (554)
                      ++|.++.+++.+|.++..+|++++|+..|+++++++|++.
T Consensus       106 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A          106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            9999999999999999999999999999999999999983

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.26  E-value=1.5e-10  Score=104.32  Aligned_cols=135  Identities=18%  Similarity=0.209  Sum_probs=113.3

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      ...+...|..++..|++++|+..|++++.    ..|.+           ..++.++|.++..++++++|+..+++++..+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  106 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLA----DAPDN-----------VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN  106 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            45677889999999999999999999998    66766           6789999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      |.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+.......+++.  ..|++++...|+
T Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~--~~~~~~~~~~~~  176 (186)
T 3as5_A          107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE-GKVHRAIAFSYEQMGRHEEAL--PHFKKANELDEG  176 (186)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHHHC
T ss_pred             cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHcCCHHHHH--HHHHHHHHcCCC
Confidence            9999999999999999999999999999999999987 566666666666555334444  567666655443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.25  E-value=4.8e-11  Score=115.58  Aligned_cols=106  Identities=11%  Similarity=0.200  Sum_probs=96.4

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..+++.|+|++|+..|++++.    ..|.++        ....+++++|.||+++|+|++|+..+++++..
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~p~~~--------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~   81 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFT----YGRTHE--------WAADAQFYLARAYYQNKEYLLAASEYERFIQI   81 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGG----GCSCST--------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCCCCc--------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            367788999999999999999999999999    777652        22578999999999999999999999999999


Q ss_pred             CCCC---hHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCC
Q 008780          477 NPAH---VKGLYRRGMAYMA--------LGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       477 ~p~~---~ka~~~~g~a~~~--------l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +|++   ..+++++|.++..        +|++++|+..|+++++++|++
T Consensus        82 ~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  130 (261)
T 3qky_A           82 YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH  130 (261)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence            8854   6799999999999        999999999999999999987

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.25  E-value=2e-10  Score=111.17  Aligned_cols=140  Identities=18%  Similarity=0.202  Sum_probs=114.5

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH--------ccCHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK--------LGECRKSIEA  469 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k--------l~~~~~A~~~  469 (554)
                      ...+...|..+++.|+|++|+..|++++.    ..|.+..        ...+++++|.|+.+        ++++++|+..
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~----~~p~~~~--------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~  119 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQ----IYQIDPR--------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEA  119 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCTT--------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHH----HCCCCch--------hHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            56788999999999999999999999999    7776522        25689999999999        9999999999


Q ss_pred             HHHHHhhCCCChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHH-
Q 008780          470 CNKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQR-  529 (554)
Q Consensus       470 ~~~al~~~p~~~ka~-----------------~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~--~~~~~~l~~l~~~~-  529 (554)
                      +++++..+|++..+.                 +.+|.++..+|+|++|+..|+++++.+|++.  ..+...+..+.... 
T Consensus       120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g  199 (261)
T 3qky_A          120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA  199 (261)
T ss_dssp             HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence            999999999987776                 9999999999999999999999999999862  33444555544433 


Q ss_pred             ---------HHHHHHHHHHHHHhhccccccc
Q 008780          530 ---------QVKLKVRLENSLKGCLTRSLGK  551 (554)
Q Consensus       530 ---------~~~~~~~~~~~y~~~f~~~~~~  551 (554)
                               ...+++.  ..|+++....|+.
T Consensus       200 ~~~~~~~~~~~~~~A~--~~~~~~~~~~p~~  228 (261)
T 3qky_A          200 EQSVRARQPERYRRAV--ELYERLLQIFPDS  228 (261)
T ss_dssp             HTSCGGGHHHHHHHHH--HHHHHHHHHCTTC
T ss_pred             ccchhhcccchHHHHH--HHHHHHHHHCCCC
Confidence                     2233444  7888887776654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.24  E-value=2.6e-11  Score=109.94  Aligned_cols=132  Identities=11%  Similarity=0.056  Sum_probs=108.9

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      +...++.++..++|++|+..|++++.    ..|.+           ..+++++|.+|..+++|++|+.++.+++.++|.+
T Consensus        13 ~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   77 (177)
T 2e2e_A           13 QRDPLHQFASQQNPEAQLQALQDKIR----ANPQN-----------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN   77 (177)
T ss_dssp             SSTTTCCCC-----CCCCHHHHHHHH----HCCSC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC
T ss_pred             HhhhhhhhhhccCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            34567778899999999999999999    78877           6799999999999999999999999999999999


Q ss_pred             hHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          481 VKGLYRRGMA-YMALGEF--EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       481 ~ka~~~~g~a-~~~l~~~--~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      +.+++.+|.+ +...+++  ++|+..|+++++++|++ ..+...+..+.......+++.  ..|++++...|.
T Consensus        78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~--~~~~~al~~~p~  147 (177)
T 2e2e_A           78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE-ITALMLLASDAFMQANYAQAI--ELWQKVMDLNSP  147 (177)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH--HHHHHHHHTCCT
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHH--HHHHHHHhhCCC
Confidence            9999999999 8899999  99999999999999998 567777777666655444444  678887776554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.23  E-value=9.5e-11  Score=124.34  Aligned_cols=134  Identities=12%  Similarity=0.103  Sum_probs=118.0

Q ss_pred             HHHHHHHhhhhhhhcCCH-HHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          397 EAEKIRVTGNRLFKEGKF-ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~-~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      .+..+..+|..++..++| ++|+..|++|++    ++|.+           ..+++++|.||.++|+|++|+.+++++++
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~  165 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVK----LEPEL-----------VEAWNQLGEVYWKKGDVTSAHTCFSGALT  165 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            366788999999999999 999999999999    88887           67999999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH--------HHHHHHHHH
Q 008780          476 ANPAHVKGLYRRGMAYMAL---------GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR--------QVKLKVRLE  538 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l---------~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~--------~~~~~~~~~  538 (554)
                      ++|+ ..+++++|.++..+         |++++|+..|++|++++|++ ..++..+..+....        ...+++.  
T Consensus       166 ~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~~~~g~~~~A~--  241 (474)
T 4abn_A          166 HCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-GRSWYILGNAYLSLYFNTGQNPKISQQAL--  241 (474)
T ss_dssp             TCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHH--
T ss_pred             hCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhhccccchHHHHH--
Confidence            9998 79999999999999         99999999999999999998 67777777777666        5344444  


Q ss_pred             HHHHhhccccc
Q 008780          539 NSLKGCLTRSL  549 (554)
Q Consensus       539 ~~y~~~f~~~~  549 (554)
                      ..|++.+...|
T Consensus       242 ~~~~~al~~~p  252 (474)
T 4abn_A          242 SAYAQAEKVDR  252 (474)
T ss_dssp             HHHHHHHHHCG
T ss_pred             HHHHHHHHhCC
Confidence            67777766554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.23  E-value=1e-10  Score=110.80  Aligned_cols=106  Identities=20%  Similarity=0.295  Sum_probs=94.6

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+..+|..+++.|+|++|+..|++++.    ..|.+..        ...+++++|.||.++++|++|+..++++++.+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~----~~p~~~~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   71 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDN----RYPFGPY--------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   71 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTSTT--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCChH--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            45678899999999999999999999999    6776521        24689999999999999999999999999999


Q ss_pred             CCChH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCh
Q 008780          478 PAHVK---GLYRRGMAYMA------------------LGEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       478 p~~~k---a~~~~g~a~~~------------------l~~~~~A~~~~~~al~l~P~~~  515 (554)
                      |++..   ++|++|.++..                  ++++++|+..|+++++.+|++.
T Consensus        72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~  130 (225)
T 2yhc_A           72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ  130 (225)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred             cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence            99876   89999999986                  5799999999999999999983

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.22  E-value=1.7e-11  Score=108.42  Aligned_cols=112  Identities=9%  Similarity=0.019  Sum_probs=92.4

Q ss_pred             HHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Q 008780          419 AKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE  498 (554)
Q Consensus       419 ~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~  498 (554)
                      ..|++++.    ++|.+           ...++++|.+++..|+|++|+..+++++.++|.++.+|+.+|.++..+|+|+
T Consensus         8 ~~~~~al~----~~p~~-----------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~   72 (148)
T 2vgx_A            8 GTIAMLNE----ISSDT-----------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD   72 (148)
T ss_dssp             CSHHHHTT----CCHHH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHc----CCHhh-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHH
Confidence            34677777    66654           6789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008780          499 EAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRS  548 (554)
Q Consensus       499 ~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~  548 (554)
                      +|+..|++|+.++|++ ..+...+..+.......+++.  ..|++.....
T Consensus        73 ~A~~~~~~al~l~p~~-~~~~~~lg~~~~~~g~~~~A~--~~~~~al~~~  119 (148)
T 2vgx_A           73 LAIHSYSYGAVMDIXE-PRFPFHAAECLLQXGELAEAE--SGLFLAQELI  119 (148)
T ss_dssp             HHHHHHHHHHHHSTTC-THHHHHHHHHHHHTTCHHHHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCC-chHHHHHHHHHHHcCCHHHHH--HHHHHHHHHC
Confidence            9999999999999998 566666666665555344444  5666665543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.22  E-value=6.4e-12  Score=104.12  Aligned_cols=95  Identities=29%  Similarity=0.427  Sum_probs=86.1

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..++..|+|++|+..|++|++    +.|.+           ..+++|+|.|+.++|+|++|+.++++++++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT----AQPQN-----------PVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            467788999999999999999999999999    78877           678999999999999999999999999999


Q ss_pred             CCCC------hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008780          477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEM  506 (554)
Q Consensus       477 ~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~  506 (554)
                      +|++      ..+++++|.++..+|++++|+..|++
T Consensus        68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            9999      99999999999999998888776654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.21  E-value=1.5e-10  Score=110.48  Aligned_cols=111  Identities=25%  Similarity=0.404  Sum_probs=87.5

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..++..|+|++|+..|++++.    ..|.+           ..+++++|.|+.+++++++|+.+++++++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  202 (258)
T 3uq3_A          138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPED-----------ARGYSNRAAALAKLMSFPEAIADCNKAIEK  202 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHh----cCccc-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            455667788888888888888888888888    66665           567888888888888888888888888888


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHH
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD------KSSEPDATAALS  523 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~------P~~~~~~~~~l~  523 (554)
                      +|+++.+++.+|.++..+|++++|+..|+++++++      |++ ..+...+.
T Consensus       203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~-~~~~~~l~  254 (258)
T 3uq3_A          203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA-REIDQLYY  254 (258)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCch-HHHHHHHH
Confidence            88888888888888888888888888888888888      765 44444443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.21  E-value=3.5e-10  Score=113.36  Aligned_cols=121  Identities=22%  Similarity=0.400  Sum_probs=106.7

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      .......|..+++.|++++|+..|++++.    ..|.+.       .....++.++|.|+.++|++++|+..++++++.+
T Consensus       234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  302 (359)
T 3ieg_A          234 LNKLIESAEELIRDGRYTDATSKYESVMK----TEPSVA-------EYTVRSKERICHCFSKDEKPVEAIRICSEVLQME  302 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSSH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCch-------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            33455679999999999999999999999    677652       2234678899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      |+++.+++.+|.++..+|++++|+..|+++++++|++ ..++..|..+...++
T Consensus       303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND-QQIREGLEKAQRLLK  354 (359)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998 677888887776665

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.21  E-value=1.3e-10  Score=108.31  Aligned_cols=102  Identities=9%  Similarity=0.094  Sum_probs=96.0

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+...|..++..|+|++|+..|++|+.    +.|.+           ..+++++|.||..+++|++|+.++++++++.
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~~~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  101 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSIN----RDKHL-----------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  101 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccc-----------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            45788999999999999999999999999    77776           6789999999999999999999999999998


Q ss_pred             CCCh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          478 PAHV----------------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       478 p~~~----------------ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      |.+.                .+++++|.++..+|++++|+..|+++++++|++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          102 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            8877                999999999999999999999999999999976

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.21  E-value=1.7e-10  Score=104.03  Aligned_cols=135  Identities=17%  Similarity=0.147  Sum_probs=114.0

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..++..|++++|+..|++++.    ..|.+           ..++.++|.++..++++++|+..+++++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   71 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYD----ADAFD-----------VDVALHLGIAYVKTGAVDRGTELLERSLAD   71 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCC----TTSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCccC-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            467788999999999999999999999988    67766           678999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      +|.+..+++.+|.++...+++++|+..|+++++++|.+ ..+...+..+.......+++.  ..|++++...+
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~--~~~~~~~~~~~  141 (186)
T 3as5_A           72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-FNVRFRLGVALDNLGRFDEAI--DSFKIALGLRP  141 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-HHHHHHHHHHHHHcCcHHHHH--HHHHHHHhcCc
Confidence            99999999999999999999999999999999999988 556666665555444333333  56666655443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.20  E-value=1.2e-10  Score=123.46  Aligned_cols=116  Identities=10%  Similarity=0.050  Sum_probs=105.0

Q ss_pred             HHHHHhhhhhhhc---------CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc--------c
Q 008780          399 EKIRVTGNRLFKE---------GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--------G  461 (554)
Q Consensus       399 ~~~~~~G~~~~~~---------g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl--------~  461 (554)
                      ..+...|..++..         |+|++|+..|++|++    +.|.+           ..+++++|.+|..+        +
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ----MDVLD-----------GRSWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHHHHhhccccc
Confidence            5677888999999         999999999999999    88887           67999999999999        9


Q ss_pred             CHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          462 ECRKSIEACNKVLDANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       462 ~~~~A~~~~~~al~~~p---~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      +|++|+.+++++++++|   .++.+|+++|.++..+|++++|+..|++|++++|++ ..++..+..+.....
T Consensus       236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~a~~~l~~~~~~lg  306 (474)
T 4abn_A          236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW-PEPQQREQQLLEFLS  306 (474)
T ss_dssp             HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHH
Confidence            99999999999999999   999999999999999999999999999999999998 566666665555444

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.20  E-value=3.3e-11  Score=125.19  Aligned_cols=87  Identities=17%  Similarity=0.281  Sum_probs=79.4

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (554)
Q Consensus        45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~  124 (554)
                      ++.||.|.+||+++ .||+.|++++      +.|+.|.+|.|++++||+.+|.||++|+++.|.||++.+||..+.+   
T Consensus       158 ~~~gD~V~i~y~g~-~dG~~fd~~~------~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~la---  227 (432)
T 1w26_A          158 VEAEDRVTIDFTGS-VDGEEFEGGK------ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLK---  227 (432)
T ss_dssp             CCTTCEEEECEEEE-SSSCBCSSCC------CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTTS---
T ss_pred             CCCCCEEEEEEEEe-eCCeEccCCC------ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCCC---
Confidence            79999999999999 5999999876      3689999999999999999999999999999999999999987654   


Q ss_pred             CCCCCCCCceEEEEEEEeeeccc
Q 008780          125 PSTFPKDEELHFEIEMIDFAKAK  147 (554)
Q Consensus       125 ~~~ip~~~~l~~~v~l~~~~~~~  147 (554)
                            |.+++|+|+|.++....
T Consensus       228 ------g~~~~F~V~v~~v~~~~  244 (432)
T 1w26_A          228 ------GKAAKFAINLKKVEERE  244 (432)
T ss_dssp             ------SCEEEEEEECCEECCEE
T ss_pred             ------CceEEEEEEEEEEeccC
Confidence                  78999999999997644

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.20  E-value=4e-11  Score=133.03  Aligned_cols=133  Identities=14%  Similarity=0.107  Sum_probs=109.5

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  478 (554)
                      ..+..+|..++..|+|++|+..|++|++    ++|.+           ..+++++|.+|.++|+|++|+.++++|++++|
T Consensus       434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  498 (681)
T 2pzi_A          434 ELPLMEVRALLDLGDVAKATRKLDDLAE----RVGWR-----------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFP  498 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHCCC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHhc----cCcch-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4567888999999999999999999999    78887           67889999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       479 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      +++.+++++|.++..+|++++ +..|++|++++|++ ..+...+..+...+...+++.  ..|++.....|.
T Consensus       499 ~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~--~~~~~al~l~P~  566 (681)
T 2pzi_A          499 GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV-ISAAFGLARARSAEGDRVGAV--RTLDEVPPTSRH  566 (681)
T ss_dssp             TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH--HHHHTSCTTSTT
T ss_pred             CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch-HHHHHHHHHHHHHcCCHHHHH--HHHHhhcccCcc
Confidence            999999999999999999999 99999999999987 566666666665555444444  677777665543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.19  E-value=4.4e-10  Score=106.47  Aligned_cols=102  Identities=16%  Similarity=0.124  Sum_probs=55.6

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+...|..++..|++++|+..|++++.    ..|.+           ..++.++|.++..++++++|+..++++++.+
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  121 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALE----LDSSA-----------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG  121 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCcc-----------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            34555666666667777777777777666    44444           3444445555555555555555555555555


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      |.+..+++.+|.++..+|++++|+..|+++++++|++
T Consensus       122 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  158 (243)
T 2q7f_A          122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND  158 (243)
T ss_dssp             CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            5555555555555555555555555555555555444

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.19  E-value=2.6e-10  Score=108.11  Aligned_cols=135  Identities=19%  Similarity=0.226  Sum_probs=113.5

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      ...+...|..++..|++++|+..|+++++    ..|.+           ..++.++|.++.+++++++|+..+++++..+
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  155 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALR----AGMEN-----------GDLFYMLGTVLVKLEQPKLALPYLQRAVELN  155 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTCCS-----------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            45667889999999999999999999999    67766           5688999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      |.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+++.  ..|++++...|+
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~--~~~~~~~~~~p~  225 (243)
T 2q7f_A          156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH-ADAFYNAGVTYAYKENREKAL--EMLDKAIDIQPD  225 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTHHH--HHHHHHHHHCTT
T ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHccCHHHHH--HHHHHHHccCcc
Confidence            9999999999999999999999999999999999987 566666666665555333444  567766655443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.18  E-value=3.3e-10  Score=108.17  Aligned_cols=144  Identities=15%  Similarity=0.143  Sum_probs=114.6

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhH---------------HHHHhhhHHHHHHHHHHHHHHccC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE---------------GKVFVGKRNLLHLNVAACLLKLGE  462 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee---------------~~~~~~~~~~~~~nla~~~~kl~~  462 (554)
                      +..+...|..++..|++++|+..|++++.    +.|..+-.               ..........++.++|.++..+++
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLT----EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHh----cCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence            67788999999999999999999999999    44431100               000112235689999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008780          463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLK  542 (554)
Q Consensus       463 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~  542 (554)
                      |++|+.++++++..+|.++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+++.  ..|+
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~--~~~~  231 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQIAVKEYASAL--ETLD  231 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH--HHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHhhHHHHH--HHHH
Confidence            9999999999999999999999999999999999999999999999999998 566666666666555333443  5666


Q ss_pred             hhcccc
Q 008780          543 GCLTRS  548 (554)
Q Consensus       543 ~~f~~~  548 (554)
                      +.+...
T Consensus       232 ~a~~~~  237 (258)
T 3uq3_A          232 AARTKD  237 (258)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            655443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.18  E-value=1.7e-10  Score=111.57  Aligned_cols=99  Identities=15%  Similarity=0.149  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH-HH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS-KL  525 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~-~l  525 (554)
                      ..++.++|.|+..++++++|+.+++++++++|.++.+++.+|.++..+|++++|+..|+++++++|.+ ..+...+. .+
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~  152 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD-PKVFYELGQAY  152 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc-HHHHHHHHHHH
Confidence            34566777777777777777777777777777777777777777777777777777777777777766 44444444 33


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccc
Q 008780          526 KKQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       526 ~~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      .... ..+++.  ..|+++....|
T Consensus       153 ~~~~-~~~~A~--~~~~~a~~~~p  173 (272)
T 3u4t_A          153 YYNK-EYVKAD--SSFVKVLELKP  173 (272)
T ss_dssp             HHTT-CHHHHH--HHHHHHHHHST
T ss_pred             HHHH-HHHHHH--HHHHHHHHhCc
Confidence            2222 222232  45555554444

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.17  E-value=2.8e-10  Score=120.53  Aligned_cols=117  Identities=25%  Similarity=0.386  Sum_probs=104.9

Q ss_pred             hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (554)
Q Consensus       394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (554)
                      +.+.+..+..+|+.+++.|+|.+|+..|++++.    ..| +           ..++.++|.|+.++|+|++|+..++++
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p-~-----------~~~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALE----LKE-D-----------PVFYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----HCC-C-----------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHh----cCc-c-----------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            456789999999999999999999999999999    666 3           578999999999999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       474 l~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ++++|++..+++.+|.++..+|++++|+..|++++.++|.+.......+..+.
T Consensus        66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (514)
T 2gw1_A           66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL  118 (514)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHH
T ss_pred             hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999977544444444433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.17  E-value=2.8e-10  Score=114.15  Aligned_cols=110  Identities=20%  Similarity=0.387  Sum_probs=101.3

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|+.++..|+|++|+..|++++.    ..|.+           ..+++++|.|+..+|+|++|+..+++++.+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   66 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDN-----------YIAYYRRATVFLAMGKSKAALPDLTKVIAL   66 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCccc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            356788999999999999999999999999    78877           679999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHH
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK---SSEPDATAAL  522 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P---~~~~~~~~~l  522 (554)
                      +|++..+++.+|.++..+|++++|+..|+++++++|   ++ ..+...+
T Consensus        67 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l  114 (359)
T 3ieg_A           67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE-KEAESQL  114 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH-HHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh-HHHHHHH
Confidence            999999999999999999999999999999999999   65 4455444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.17  E-value=1.7e-10  Score=117.00  Aligned_cols=129  Identities=16%  Similarity=0.104  Sum_probs=104.5

Q ss_pred             HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCC--ChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQ--DDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~--~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      ..|..+...|++++|+..|++++.    +.|.  +           ..+++++|.+|.++|++++|+..++++++++|++
T Consensus       182 ~l~~~~~~~g~~~~A~~~~~~al~----~~p~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  246 (365)
T 4eqf_A          182 RMSKSPVDSSVLEGVKELYLEAAH----QNGDMID-----------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED  246 (365)
T ss_dssp             -------CCHHHHHHHHHHHHHHH----HSCSSCC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHH----hCcCccC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            347888899999999999999999    7776  4           6789999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      +.+|+.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+++.  ..|++++...|
T Consensus       247 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~--~~~~~al~~~~  312 (365)
T 4eqf_A          247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF-IRSRYNLGISCINLGAYREAV--SNFLTALSLQR  312 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCCHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHCCCHHHHH--HHHHHHHHhCc
Confidence            9999999999999999999999999999999998 667777777666665333444  56666665443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.17  E-value=5.5e-10  Score=104.19  Aligned_cols=99  Identities=16%  Similarity=0.118  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHc-cCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008780          447 NLLHLNVAACLLKL-GECRKSIEACNKVLD--ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (554)
Q Consensus       447 ~~~~~nla~~~~kl-~~~~~A~~~~~~al~--~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~  523 (554)
                      ..++.++|.++..+ +++++|+..+++++.  .+|.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+.
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la  154 (225)
T 2vq2_A           76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF-PPAFKELA  154 (225)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-chHHHHHH
Confidence            34566666666666 666666666666666  445556666666666666666666666666666666665 44444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccc
Q 008780          524 KLKKQRQVKLKVRLENSLKGCLTRS  548 (554)
Q Consensus       524 ~l~~~~~~~~~~~~~~~y~~~f~~~  548 (554)
                      .+.......+++.  ..|++++...
T Consensus       155 ~~~~~~~~~~~A~--~~~~~~~~~~  177 (225)
T 2vq2_A          155 RTKMLAGQLGDAD--YYFKKYQSRV  177 (225)
T ss_dssp             HHHHHHTCHHHHH--HHHHHHHHHH
T ss_pred             HHHHHcCCHHHHH--HHHHHHHHhC
Confidence            4444443223333  4455554433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.17  E-value=6.4e-10  Score=106.27  Aligned_cols=144  Identities=13%  Similarity=0.056  Sum_probs=79.8

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChh----------------HH-HHH--------hhhHHHHHHHH
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----------------EG-KVF--------VGKRNLLHLNV  453 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~e----------------e~-~~~--------~~~~~~~~~nl  453 (554)
                      ..+...|..++..|++++|+..|++++.    ..|.+..                +. ..+        ......++.++
T Consensus        72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  147 (252)
T 2ho1_A           72 DAHAALAVVFQTEMEPKLADEEYRKALA----SDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL  147 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHH
Confidence            3455566666666666666666666666    3443311                00 000        01123456666


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 008780          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKL  533 (554)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~  533 (554)
                      |.++.++|++++|+..+.++++.+|.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+
T Consensus       148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~  226 (252)
T 2ho1_A          148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN-ARSLLLGIRLAKVFEDRD  226 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHccCHH
Confidence            6666666666666666666666666666666666666666666666666666666666665 344444444444333222


Q ss_pred             HHHHHHHHHhhccccc
Q 008780          534 KVRLENSLKGCLTRSL  549 (554)
Q Consensus       534 ~~~~~~~y~~~f~~~~  549 (554)
                      ++.  ..|+++....|
T Consensus       227 ~A~--~~~~~~~~~~p  240 (252)
T 2ho1_A          227 TAA--SYGLQLKRLYP  240 (252)
T ss_dssp             HHH--HHHHHHHHHCT
T ss_pred             HHH--HHHHHHHHHCC
Confidence            332  44555544433

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.16  E-value=4.6e-10  Score=114.96  Aligned_cols=100  Identities=14%  Similarity=0.205  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ..++.++|.+|.++|++++|+..++++++++|+++.+++.+|.++...|++++|+..|+++++++|++ ..+...+..+.
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~  315 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH-ADSLNNLANIK  315 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-HHHHHHHHHHH
Confidence            34566666666666666666666666666666666666666666666666666666666666666665 34444444443


Q ss_pred             HHHHHHHHHHHHHHHHhhccccc
Q 008780          527 KQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       527 ~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      ......+++.  ..|+++....|
T Consensus       316 ~~~g~~~~A~--~~~~~al~~~p  336 (388)
T 1w3b_A          316 REQGNIEEAV--RLYRKALEVFP  336 (388)
T ss_dssp             HTTTCHHHHH--HHHHHHTTSCT
T ss_pred             HHcCCHHHHH--HHHHHHHhcCC
Confidence            3333222333  45555554433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.15  E-value=6.9e-10  Score=94.35  Aligned_cols=99  Identities=15%  Similarity=0.076  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (554)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~  528 (554)
                      .++++|.++++.|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|++|++++|++ ..+...|..+...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~la~~~~~   97 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHTN   97 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999999999999999999999998 6677777777766


Q ss_pred             HHHHHHHHHHHHHHhhcccccc
Q 008780          529 RQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       529 ~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      ....+++.  ..|++.+...|+
T Consensus        98 ~g~~~~A~--~~~~~al~~~P~  117 (121)
T 1hxi_A           98 EHNANAAL--ASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHH--HHHHHHHC----
T ss_pred             cCCHHHHH--HHHHHHHHhCcC
Confidence            66555555  788888877664

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.14  E-value=4.6e-10  Score=115.00  Aligned_cols=135  Identities=19%  Similarity=0.192  Sum_probs=112.3

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+...|..+++.|++++|+..|+++++    +.|.+           ..+++++|.++.++|++++|+..++++++++
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  301 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIE----LQPHF-----------PDAYCNLANALKEKGSVAEAEDCYNTALRLC  301 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TCSSC-----------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            44566788888888888888888888888    77776           5689999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      |.++.+++.+|.++...|++++|+..|+++++++|++ ..+...+..+.......+++.  ..|++++...|.
T Consensus       302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~--~~~~~a~~~~p~  371 (388)
T 1w3b_A          302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-AAAHSNLASVLQQQGKLQEAL--MHYKEAIRISPT  371 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHHTTTCCHHHH--HHHHHHHTTCTT
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHH--HHHHHHHhhCCC
Confidence            9999999999999999999999999999999999998 566666666655554334444  678777766554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.14  E-value=9.5e-10  Score=102.54  Aligned_cols=83  Identities=18%  Similarity=0.154  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK-SSEPDATAALSKL  525 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P-~~~~~~~~~l~~l  525 (554)
                      ..++.++|.++.+++++++|+..+.++++.+|.+..+++.+|.++..+|++++|+..|+++++++| .+ ......+..+
T Consensus       113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~  191 (225)
T 2vq2_A          113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ-ADDLLLGWKI  191 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999999999999998 76 4555555555


Q ss_pred             HHHHH
Q 008780          526 KKQRQ  530 (554)
Q Consensus       526 ~~~~~  530 (554)
                      .....
T Consensus       192 ~~~~~  196 (225)
T 2vq2_A          192 AKALG  196 (225)
T ss_dssp             HHHTT
T ss_pred             HHhcC
Confidence            44444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.14  E-value=9.1e-11  Score=102.60  Aligned_cols=100  Identities=9%  Similarity=0.017  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ...++++|.++++.|+|++|+..+++++..+|.++.+|+.+|.++..+|+|++|+..|++|+.++|++ ..+...+..+.
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~   96 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE-PRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-cHHHHHHHHHH
Confidence            66889999999999999999999999999999999999999999999999999999999999999998 56666666666


Q ss_pred             HHHHHHHHHHHHHHHHhhccccc
Q 008780          527 KQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       527 ~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      ......+++.  ..|++.+...|
T Consensus        97 ~~~g~~~~A~--~~~~~al~~~p  117 (142)
T 2xcb_A           97 LQLGDLDGAE--SGFYSARALAA  117 (142)
T ss_dssp             HHTTCHHHHH--HHHHHHHHHHH
T ss_pred             HHcCCHHHHH--HHHHHHHHhCC
Confidence            5555334444  56666655443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.13  E-value=3.7e-10  Score=114.53  Aligned_cols=102  Identities=23%  Similarity=0.409  Sum_probs=96.3

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+...|..++..|++++|+..|++++.    ..|.+           ..+++++|.+|.++|++++|+.+++++++++
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  277 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALT----VRPED-----------YSLWNRLGATLANGDRSEEAVEAYTRALEIQ  277 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            45677889999999999999999999999    78877           6789999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      |+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus       278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999999874

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.13  E-value=1.1e-09  Score=114.14  Aligned_cols=120  Identities=23%  Similarity=0.419  Sum_probs=105.2

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  478 (554)
                      ......|..+++.|++++|+..|++++.    +.|.+.+       ....++.++|.++.++|++++|+..+++++.++|
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  326 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESVMK----TEPSIAE-------YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP  326 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCCSSHH-------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcchH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            3345669999999999999999999999    7777522       2346899999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       479 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      +++.+|+.+|.++..+|++++|+..|+++++++|++ ..+...+..+.....
T Consensus       327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~  377 (450)
T 2y4t_A          327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND-QQIREGLEKAQRLLK  377 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999998 677777776655543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.13  E-value=5.5e-10  Score=106.73  Aligned_cols=126  Identities=13%  Similarity=0.238  Sum_probs=75.3

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhH----------------H-HHH------hhhHHHHHHHH
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE----------------G-KVF------VGKRNLLHLNV  453 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee----------------~-~~~------~~~~~~~~~nl  453 (554)
                      .+..+...|..++..|++++|+..|++++.    ..|.+..-                . ..+      ......++.++
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  111 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALE----IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY  111 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence            378889999999999999999999999998    56655210                0 000      01122345555


Q ss_pred             HHHHHHccCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          454 AACLLKLGECRKSIEACNKVLD--ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~al~--~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      |.++..++++++|+..+++++.  .+|.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+..
T Consensus       112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~  186 (252)
T 2ho1_A          112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ-PSVALEMADLLY  186 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc-HHHHHHHHHHHH
Confidence            5555555555555555555555  455555555555555555555555555555555555554 333434444333

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.13  E-value=3.5e-10  Score=120.66  Aligned_cols=112  Identities=29%  Similarity=0.487  Sum_probs=100.8

Q ss_pred             CCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHH
Q 008780          387 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  466 (554)
Q Consensus       387 ~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A  466 (554)
                      ..++..+..+.+..+..+|+.+++.|+|++|+..|++++.    ..|.+           ..+++++|.||.++|+|++|
T Consensus        14 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A   78 (537)
T 3fp2_A           14 KGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE----LDPNE-----------PVFYSNISACYISTGDLEKV   78 (537)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHH
T ss_pred             cCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh----hCCCC-----------cHHHHHHHHHHHHcCCHHHH
Confidence            3567788888999999999999999999999999999999    88887           78999999999999999999


Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       467 ~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +..|+++++++|+++.+++.+|.++..+|++++|+..|+ ++.++|+.
T Consensus        79 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~  125 (537)
T 3fp2_A           79 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDF  125 (537)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCC
Confidence            999999999999999999999999999999999999996 99999876

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.13  E-value=7e-10  Score=92.88  Aligned_cols=83  Identities=14%  Similarity=0.195  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 008780          416 LAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG  495 (554)
Q Consensus       416 ~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~  495 (554)
                      .|+..|+++++    ..|.+           ..+++++|.+|..+|+|++|+.++++++.++|.+..+|+.+|.++..+|
T Consensus         3 ~a~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   67 (115)
T 2kat_A            3 AITERLEAMLA----QGTDN-----------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG   67 (115)
T ss_dssp             CHHHHHHHHHT----TTCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence            57889999999    88887           6799999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 008780          496 EFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       496 ~~~~A~~~~~~al~l~P~  513 (554)
                      ++++|+..|+++++++|.
T Consensus        68 ~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           68 DRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccc
Confidence            999999999999999884

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.12  E-value=1e-09  Score=114.44  Aligned_cols=105  Identities=21%  Similarity=0.398  Sum_probs=99.8

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      ...+..+...|..+++.|+|.+|+..|++++.    ..|.+           ..+++++|.|+..+|++++|+..+++++
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al   87 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDN-----------YIAYYRRATVFLAMGKSKAALPDLTKVI   87 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            35678899999999999999999999999999    77877           7899999999999999999999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +++|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus        88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  127 (450)
T 2y4t_A           88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE  127 (450)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH
T ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999999999999986

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.11  E-value=4.4e-10  Score=111.30  Aligned_cols=135  Identities=16%  Similarity=0.199  Sum_probs=112.3

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      ...+...|..++..|++++|+..|++++.    ..|.+           ..++.++|.++..++++++|+..++++++.+
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  236 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVE----LRPDD-----------AQLWNKLGATLANGNRPQEALDAYNRALDIN  236 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            45677889999999999999999999999    77776           6789999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-----------EPDATAALSKLKKQRQVKLKVRLENSLKGCLT  546 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~-----------~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~  546 (554)
                      |.+..+++.+|.++..+|++++|+..|+++++++|++           ...+...+..+.......+++.  ..|++.+.
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--~~~~~~l~  314 (327)
T 3cv0_A          237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE--LTYAQNVE  314 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH--HHTTCCSH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH--HHHHHHHH
Confidence            9999999999999999999999999999999999982           2556666666655555334444  55655554


Q ss_pred             ccc
Q 008780          547 RSL  549 (554)
Q Consensus       547 ~~~  549 (554)
                      ..+
T Consensus       315 ~~~  317 (327)
T 3cv0_A          315 PFA  317 (327)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.11  E-value=3.5e-10  Score=114.42  Aligned_cols=118  Identities=19%  Similarity=0.297  Sum_probs=97.0

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+...|..++..|++++|+..|++++.    +.|.+           ..+++++|.++.++|++++|+..++++++++
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  281 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALS----VRPND-----------YLLWNKLGATLANGNQSEEAVAAYRRALELQ  281 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45667788888889999999999999988    67766           5688899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----------HHHHHHHHHHHHHHH
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE----------PDATAALSKLKKQRQ  530 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~----------~~~~~~l~~l~~~~~  530 (554)
                      |.++.+++.+|.++..+|++++|+..|+++++++|++.          ..++..+..+.....
T Consensus       282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  344 (368)
T 1fch_A          282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG  344 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999888761          345555665555554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.11  E-value=1.5e-10  Score=128.42  Aligned_cols=111  Identities=15%  Similarity=0.127  Sum_probs=101.8

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+..+|..++..|+|++|+..|++|++    ++|.+           ..+++|+|.||.++|+|++ +.+|++|++++
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~-----------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~  530 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLD----TFPGE-----------LAPKLALAATAELAGNTDE-HKFYQTVWSTN  530 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSTTC-----------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhC
Confidence            45678899999999999999999999999    88988           6799999999999999999 99999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      |+++.+|+++|.++..+|++++|+.+|++|++++|++ ..++..+..+
T Consensus       531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~~~~~  577 (681)
T 2pzi_A          531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF-TTARLTSAVT  577 (681)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH-HHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc-HHHHHHHHHH
Confidence            9999999999999999999999999999999999987 5555544444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.11  E-value=3.5e-10  Score=97.10  Aligned_cols=100  Identities=11%  Similarity=0.156  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP------DATA  520 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~------~~~~  520 (554)
                      +.++.|+|.++++.|+|++|+.++++||+++|+++.+|+++|.+|..+|+|++|+.+|++|++++|++..      .+..
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            5688999999999999999999999999999999999999999999999999999999999999886521      1222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008780          521 ALSKLKKQRQVKLKVRLENSLKGCLTRS  548 (554)
Q Consensus       521 ~l~~l~~~~~~~~~~~~~~~y~~~f~~~  548 (554)
                      .+..+...+...+++.  ..|++.+...
T Consensus        88 ~lg~~~~~~~~~~~A~--~~~~kal~~~  113 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAV--QWFHRSLSEF  113 (127)
T ss_dssp             HHHHHHHHTTCHHHHH--HHHHHHHHHS
T ss_pred             HHHHHHHHcCCHHHHH--HHHHHHHhhC
Confidence            2333333333333443  5677665543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.10  E-value=2.8e-10  Score=103.36  Aligned_cols=130  Identities=15%  Similarity=0.166  Sum_probs=91.8

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHH------------
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI------------  467 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~------------  467 (554)
                      .+...|..++..|++++|+..|++++.    .+|.+           ..+++++|.++..+|++++|+            
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~   72 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSD----ELQSR-----------GDVKLAKADCLLETKQFELAQELLATIPLEYQD   72 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCH----HHHTS-----------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCC
Confidence            355778888888888888888888887    66666           455666666666666655554            


Q ss_pred             ----------------------HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHH
Q 008780          468 ----------------------EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAALSK  524 (554)
Q Consensus       468 ----------------------~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~-~~~~~~l~~  524 (554)
                                            ..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++. ..++..+..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~  152 (176)
T 2r5s_A           73 NSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMD  152 (176)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence                                  445555666788999999999999999999999999999999998742 346666666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc
Q 008780          525 LKKQRQVKLKVRLENSLKGCLT  546 (554)
Q Consensus       525 l~~~~~~~~~~~~~~~y~~~f~  546 (554)
                      +.......+.+.  ..|++.+.
T Consensus       153 ~~~~~g~~~~A~--~~y~~al~  172 (176)
T 2r5s_A          153 ILSALGQGNAIA--SKYRRQLY  172 (176)
T ss_dssp             HHHHHCSSCHHH--HHHHHHHH
T ss_pred             HHHHhCCCCcHH--HHHHHHHH
Confidence            655554222233  45665543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.10  E-value=1.4e-09  Score=102.97  Aligned_cols=140  Identities=15%  Similarity=0.173  Sum_probs=110.9

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH------------------
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK------------------  459 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k------------------  459 (554)
                      ...+...|..+++.|+|++|+..|+++++    ..|.+..        ...+++++|.|+.+                  
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~----~~P~~~~--------~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~  108 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIR----LNPTHPN--------IDYVMYMRGLTNMALDDSALQGFFGVDRSDRD  108 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCTT--------HHHHHHHHHHHHHHHHC--------------C
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCCc--------HHHHHHHHHHHHHhhhhhhhhhhhccchhhcC
Confidence            45678899999999999999999999999    7887632        13467788888876                  


Q ss_pred             ccCHHHHHHHHHHHHhhCCCChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHH
Q 008780          460 LGECRKSIEACNKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP--DATA  520 (554)
Q Consensus       460 l~~~~~A~~~~~~al~~~p~~~ka~-----------------~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~--~~~~  520 (554)
                      ++++++|+..++++++.+|++..++                 +.+|.++...|++++|+..|+++++..|++..  .+..
T Consensus       109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  188 (225)
T 2yhc_A          109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALP  188 (225)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHH
Confidence            5799999999999999999998665                 67899999999999999999999999999832  3344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008780          521 ALSKLKKQRQVKLKVRLENSLKGCLTRSLGK  551 (554)
Q Consensus       521 ~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~~  551 (554)
                      .+..+..++...+.+.  ..|+.+....|..
T Consensus       189 ~l~~~~~~~g~~~~A~--~~~~~l~~~~~~~  217 (225)
T 2yhc_A          189 LMENAYRQMQMNAQAE--KVAKIIAANSSNT  217 (225)
T ss_dssp             HHHHHHHHTTCHHHHH--HHHHHHHHCCSCC
T ss_pred             HHHHHHHHcCCcHHHH--HHHHHHHhhCCCc
Confidence            4444444444444444  7788887776654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.10  E-value=1.3e-09  Score=108.06  Aligned_cols=129  Identities=13%  Similarity=0.098  Sum_probs=93.2

Q ss_pred             hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC------
Q 008780          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN------  477 (554)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~------  477 (554)
                      .|..++..|++++|+..|++++.    ..|.+           ..++.++|.++..+++|++|+..+++++.+.      
T Consensus       165 l~~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  229 (330)
T 3hym_B          165 IGLEYGLTNNSKLAERFFSQALS----IAPED-----------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE  229 (330)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc
Confidence            44444444444444444444444    34433           5678888999999999999999999998876      


Q ss_pred             ---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          478 ---PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       478 ---p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                         |.++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+++.  ..|++.+...|+
T Consensus       230 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~--~~~~~al~~~p~  302 (330)
T 3hym_B          230 VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN-ASTYSAIGYIHSLMGNFENAV--DYFHTALGLRRD  302 (330)
T ss_dssp             CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-SHHHHHHHHHHHHHTCHHHHH--HHHHTTTTTCSC
T ss_pred             ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc-hHHHHHHHHHHHHhccHHHHH--HHHHHHHccCCC
Confidence               6778889999999999999999999999999998887 566666776666655444444  678877766554

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.10  E-value=6.9e-11  Score=121.07  Aligned_cols=90  Identities=17%  Similarity=0.289  Sum_probs=79.3

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (554)
Q Consensus        45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~  124 (554)
                      ++.||.|.+||+++ .||+.|+++.      +.|+.|.+|.|++++||+.+|.||++|+++.|.||+...||..+++   
T Consensus       161 ~~~gD~V~i~y~g~-~dG~~fd~~~------~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~la---  230 (392)
T 1t11_A          161 AENGKRVSIDFVGS-IDGVEFEGGK------AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENLK---  230 (392)
T ss_dssp             CCTTCEEEEEEEEE-SSSSCCTTCE------EEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTTS---
T ss_pred             CCCCCEEEEEEEEE-ECCEEccCCC------ccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCCCC---
Confidence            78999999999999 5999999775      3699999999999999999999999999999999877889876653   


Q ss_pred             CCCCCCCCceEEEEEEEeeecccccc
Q 008780          125 PSTFPKDEELHFEIEMIDFAKAKIIA  150 (554)
Q Consensus       125 ~~~ip~~~~l~~~v~l~~~~~~~~~~  150 (554)
                            |.+++|+|+|.++.....+.
T Consensus       231 ------Gk~~~F~V~v~~i~~~~lpe  250 (392)
T 1t11_A          231 ------GKAAKFAIKVNKVEARELPE  250 (392)
T ss_dssp             ------SCEEEECCCEEEEEEEECCC
T ss_pred             ------CCeEEEEEEEEEEEcCCCCC
Confidence                  89999999999998654333

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.08  E-value=1.7e-09  Score=91.57  Aligned_cols=102  Identities=27%  Similarity=0.495  Sum_probs=93.7

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      ...+...|..++..+++++|+..|++++.    ..|.+           ..++.++|.++..++++++|+..+++++...
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~   99 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPRS-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD   99 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHH----HCCCc-----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            34566788999999999999999999998    66665           5688999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      |.+..+++.+|.++..+|++++|+..|++++.++|++
T Consensus       100 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999999863

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.08  E-value=9e-10  Score=106.43  Aligned_cols=115  Identities=16%  Similarity=0.202  Sum_probs=99.9

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+...|..++..|++++|+..|+++++    ..|.+           ..++.++|.+|..+|+|++|+.+++++++++
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  138 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVD----RDTTR-----------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT  138 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHh----cCccc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence            45678899999999999999999999999    77776           5789999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~  528 (554)
                      |.++.+++.+|..++..+++++|+..|+++++++|++ ..+...+..+...
T Consensus       139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~  188 (272)
T 3u4t_A          139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-YIGYLWRARANAA  188 (272)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHH
Confidence            9999999999955555569999999999999999998 4555445544443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.08  E-value=1.3e-09  Score=110.28  Aligned_cols=102  Identities=13%  Similarity=0.121  Sum_probs=96.2

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  478 (554)
                      ..+..+|..+++.|+|.+|+..|++++.    ..|.+           ..+++++|.|+.++|++++|+..++++++++|
T Consensus        65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  129 (368)
T 1fch_A           65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQ----QDPKH-----------MEAWQYLGTTQAENEQELLAISALRRCLELKP  129 (368)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHH----SCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC
Confidence            3456889999999999999999999999    88877           67899999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       479 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~  515 (554)
                      .++.+++.+|.++..+|++++|+..|++++.++|++.
T Consensus       130 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  166 (368)
T 1fch_A          130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA  166 (368)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence            9999999999999999999999999999999999873

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.08  E-value=1.9e-09  Score=106.64  Aligned_cols=113  Identities=20%  Similarity=0.247  Sum_probs=67.8

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHH-------------------HHHh------hhHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-------------------KVFV------GKRNLLHLN  452 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~-------------------~~~~------~~~~~~~~n  452 (554)
                      ...+...|..+.+.|++++|+..|+++++    ..|.+....                   ..+.      .....++++
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~----~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~  205 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQD----QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNG  205 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            34566677788888888888888888877    555441000                   0000      001235566


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCC
Q 008780          453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEE-AQRDFEMMMKVDKSS  514 (554)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~-A~~~~~~al~l~P~~  514 (554)
                      +|.|+.++|+|++|+..++++++++|+++.+++++|.++..+|++++ |...++++++++|++
T Consensus       206 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH  268 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence            66666666666666666666666666666666666666666666654 345556666666665

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.08  E-value=1.3e-09  Score=92.76  Aligned_cols=99  Identities=14%  Similarity=0.121  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ...+.++|.++++.++|++|+..++++++++|+++.+|+++|.++..+|++++|+.+|+++++++|++ ..+...+..+.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~   82 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999998 66776777666


Q ss_pred             HHHHHHHHHHHHHHHHhhcccc
Q 008780          527 KQRQVKLKVRLENSLKGCLTRS  548 (554)
Q Consensus       527 ~~~~~~~~~~~~~~y~~~f~~~  548 (554)
                      ......+++.  ..|++.+...
T Consensus        83 ~~~~~~~~A~--~~~~~al~~~  102 (126)
T 3upv_A           83 IAVKEYASAL--ETLDAARTKD  102 (126)
T ss_dssp             HHTTCHHHHH--HHHHHHHHHH
T ss_pred             HHHhCHHHHH--HHHHHHHHhC
Confidence            6655334444  5666665544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.07  E-value=5.7e-10  Score=110.05  Aligned_cols=133  Identities=14%  Similarity=0.139  Sum_probs=103.3

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHH------
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC------  470 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~------  470 (554)
                      ....+...|..+...|++++|+..|++++.    .+|.+           ..+++++|.++..+|++++|+..+      
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~  180 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQ----LSNQN-----------GEIGLLLAETLIALNRSEDAEAVLXTIPLQ  180 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTTSC-----------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCcc-----------hhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence            346678999999999999999999999999    88988           567788888888888777766554      


Q ss_pred             ----------------------------HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHH
Q 008780          471 ----------------------------NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAA  521 (554)
Q Consensus       471 ----------------------------~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~-~~~~~~  521 (554)
                                                  +++++.+|+++.+++.+|.++...|++++|+..|.++++++|++. ..++..
T Consensus       181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~  260 (287)
T 3qou_A          181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT  260 (287)
T ss_dssp             GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred             hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence                                        445677899999999999999999999999999999999999862 346666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc
Q 008780          522 LSKLKKQRQVKLKVRLENSLKGCLT  546 (554)
Q Consensus       522 l~~l~~~~~~~~~~~~~~~y~~~f~  546 (554)
                      |..+.......+.+.  ..|++.+.
T Consensus       261 l~~~~~~~g~~~~a~--~~~r~al~  283 (287)
T 3qou_A          261 FQEILAALGTGDALA--SXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHCTTCHHH--HHHHHHHH
T ss_pred             HHHHHHHcCCCCcHH--HHHHHHHH
Confidence            666655554222333  45655543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.07  E-value=1.1e-09  Score=108.23  Aligned_cols=143  Identities=10%  Similarity=0.042  Sum_probs=104.2

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHH
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-GECRKSIEACNKVL  474 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl-~~~~~A~~~~~~al  474 (554)
                      ..+..+.+.|+.+...|+|++|+.+|++|+.+.....  +       ......++.|+|.+|..+ +++++|+.++++|+
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~-------~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al  145 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--Q-------FRRGANFKFELGEILENDLHDYAKAIDCYELAG  145 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            3467788999999999999999999999998543321  1       111256889999999995 99999999999999


Q ss_pred             hhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008780          475 DANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD------ATAALSKLKKQRQVKLKVRLENSLK  542 (554)
Q Consensus       475 ~~~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~------~~~~l~~l~~~~~~~~~~~~~~~y~  542 (554)
                      ++.|.+      ..++.++|.++..+|+|++|+..|++++++.|++...      +...+..+.........+.  ..|+
T Consensus       146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~--~~~~  223 (292)
T 1qqe_A          146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA--RTLQ  223 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH--HHHH
T ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH--HHHH
Confidence            998754      5689999999999999999999999999999876321      1222333333333333333  5666


Q ss_pred             hhccccc
Q 008780          543 GCLTRSL  549 (554)
Q Consensus       543 ~~f~~~~  549 (554)
                      +.....|
T Consensus       224 ~al~l~p  230 (292)
T 1qqe_A          224 EGQSEDP  230 (292)
T ss_dssp             GGGCC--
T ss_pred             HHHhhCC
Confidence            6655443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.07  E-value=1.1e-09  Score=105.77  Aligned_cols=133  Identities=16%  Similarity=0.119  Sum_probs=107.6

Q ss_pred             HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChH
Q 008780          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (554)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k  482 (554)
                      ..+..+...++|++|+..|+++++    ..+.++       .....+++++|.++..+|+|++|+..+++++.++|.++.
T Consensus        10 ~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~   78 (275)
T 1xnf_A           10 VLAVPLQPTLQQEVILARMEQILA----SRALTD-------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE   78 (275)
T ss_dssp             GSCCCCCCCHHHHHHHHHHHHHHT----SSCCCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH
T ss_pred             ceeeccCccchHHHHHHHHHHHHh----cccccC-------chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH
Confidence            345566677999999999999998    433331       123678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       483 a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      +++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+++.  ..|++++...|
T Consensus        79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~--~~~~~a~~~~~  142 (275)
T 1xnf_A           79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRDKLAQ--DDLLAFYQDDP  142 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHH--HHHHHHHHHCT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCccc-cHHHHHHHHHHHHhccHHHHH--HHHHHHHHhCC
Confidence            99999999999999999999999999999988 566666666665555334444  56776665444

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.07  E-value=3.5e-10  Score=117.42  Aligned_cols=86  Identities=17%  Similarity=0.162  Sum_probs=78.1

Q ss_pred             CCCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcc
Q 008780          167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE  246 (554)
Q Consensus       167 ~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~  246 (554)
                      ..++.||.|++||+++ .||+.|+++. ++|+.|.+|.|+++|||+++|.||++|++++|.+|+..+||...    .+++
T Consensus       156 ~~~~~gD~V~i~y~g~-~dG~~fd~~~-~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~----lag~  229 (432)
T 1w26_A          156 GAVEAEDRVTIDFTGS-VDGEEFEGGK-ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAEN----LKGK  229 (432)
T ss_dssp             SCCCTTCEEEECEEEE-SSSCBCSSCC-CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTT----TSSC
T ss_pred             CCCCCCCEEEEEEEEe-eCCeEccCCC-ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCC----CCCc
Confidence            5688999999999998 5999999876 78999999999999999999999999999999999999999653    2568


Q ss_pred             eEEEEEeeeeee
Q 008780          247 EVHFEVELVHLI  258 (554)
Q Consensus       247 ~l~~~v~l~~~~  258 (554)
                      +++|+|+|+++.
T Consensus       230 ~~~F~V~v~~v~  241 (432)
T 1w26_A          230 AAKFAINLKKVE  241 (432)
T ss_dssp             EEEEEEECCEEC
T ss_pred             eEEEEEEEEEEe
Confidence            999999999995

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.05  E-value=1.9e-09  Score=106.85  Aligned_cols=144  Identities=9%  Similarity=0.026  Sum_probs=93.2

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHH-----------------H------HHhhhHHHHHHHHHHH
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------K------VFVGKRNLLHLNVAAC  456 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~-----------------~------~~~~~~~~~~~nla~~  456 (554)
                      .+...|..++..|+|++|+..|++++.    ..|.+....                 .      ........+++++|.+
T Consensus        24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   99 (330)
T 3hym_B           24 VVVSLAERHYYNCDFKMCYKLTSVVME----KDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY   99 (330)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            345667777777888888888888777    555442100                 0      0001124467777777


Q ss_pred             HHHcc-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 008780          457 LLKLG-ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKV  535 (554)
Q Consensus       457 ~~kl~-~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~  535 (554)
                      +..++ ++++|+.++++++.++|.++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+++
T Consensus       100 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A  178 (330)
T 3hym_B          100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC-HLPMLYIGLEYGLTNNSKLA  178 (330)
T ss_dssp             HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-SHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhHHHH
Confidence            77777 77778888888887777777778888888888888888888888888777776 34444455554444433334


Q ss_pred             HHHHHHHhhcccccc
Q 008780          536 RLENSLKGCLTRSLG  550 (554)
Q Consensus       536 ~~~~~y~~~f~~~~~  550 (554)
                      .  ..|++++...|.
T Consensus       179 ~--~~~~~al~~~~~  191 (330)
T 3hym_B          179 E--RFFSQALSIAPE  191 (330)
T ss_dssp             H--HHHHHHHTTCTT
T ss_pred             H--HHHHHHHHhCCC
Confidence            3  566666665543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.05  E-value=1.6e-09  Score=96.93  Aligned_cols=101  Identities=20%  Similarity=0.152  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ...++++|.++++.++|++|+.+++++++++|+++.+|+++|.++..+|+|++|+.+|+++++++|++ ..+...+..+.
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~   89 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-SKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999998 66777777776


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccc
Q 008780          527 KQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       527 ~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      ......+++.  ..|++.+...|+
T Consensus        90 ~~~g~~~~A~--~~~~~al~~~p~  111 (164)
T 3sz7_A           90 FDMADYKGAK--EAYEKGIEAEGN  111 (164)
T ss_dssp             HHTTCHHHHH--HHHHHHHHHHSS
T ss_pred             HHccCHHHHH--HHHHHHHHhCCC
Confidence            6665444444  677777665544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.02  E-value=1.7e-09  Score=106.71  Aligned_cols=145  Identities=8%  Similarity=0.072  Sum_probs=106.7

Q ss_pred             hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (554)
Q Consensus       394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (554)
                      .-+.+..+...|+.+...|+|++|+..|.+|+.......  +       ......++.|+|.||.++|+|++|+.++++|
T Consensus        33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~-------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A  103 (292)
T 1qqe_A           33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG--N-------EDEAGNTYVEAYKCFKSGGNSVNAVDSLENA  103 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--C-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            334455566667888899999999999999999644332  1       1122678999999999999999999999999


Q ss_pred             HhhCCCC------hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008780          474 LDANPAH------VKGLYRRGMAYMAL-GEFEEAQRDFEMMMKVDKSSE-----PDATAALSKLKKQRQVKLKVRLENSL  541 (554)
Q Consensus       474 l~~~p~~------~ka~~~~g~a~~~l-~~~~~A~~~~~~al~l~P~~~-----~~~~~~l~~l~~~~~~~~~~~~~~~y  541 (554)
                      +++.+..      +.++.++|.+|... |++++|+..|++|+++.|.+.     ..+...+..+...+...+++.  ..|
T Consensus       104 l~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~--~~~  181 (292)
T 1qqe_A          104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS--DIY  181 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH--HHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH--HHH
Confidence            9998654      67899999999995 999999999999999987531     122333344444333334444  567


Q ss_pred             Hhhccccc
Q 008780          542 KGCLTRSL  549 (554)
Q Consensus       542 ~~~f~~~~  549 (554)
                      ++.....+
T Consensus       182 ~~al~~~~  189 (292)
T 1qqe_A          182 SKLIKSSM  189 (292)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHHHh
Confidence            76665443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.02  E-value=8.2e-09  Score=109.20  Aligned_cols=127  Identities=10%  Similarity=0.038  Sum_probs=103.0

Q ss_pred             hhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc-cCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHH
Q 008780          391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA  469 (554)
Q Consensus       391 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~-~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  469 (554)
                      ..+.++.+....+.+..+..+|+|++|+..|+++|+.... +.+.+.        .....++|||.+|..+|+|++|+.+
T Consensus       302 v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp--------~~a~~~~nLa~~y~~~g~~~eA~~~  373 (490)
T 3n71_A          302 VKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNL--------YVLRLLSIASEVLSYLQAYEEASHY  373 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSH--------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            4456667778888888899999999999999999997655 344442        2467899999999999999999999


Q ss_pred             HHHHHhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHH
Q 008780          470 CNKVLDAN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDATAALSKLK  526 (554)
Q Consensus       470 ~~~al~~~--------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l-----~P~~~~~~~~~l~~l~  526 (554)
                      +.++|++.        |.-+.++.++|.+|..+|+|++|+..|++|+++     -|++ +.+...+..+.
T Consensus       374 ~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~~~~~l~  442 (490)
T 3n71_A          374 ARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH-PITKDLEAMRM  442 (490)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHH
Confidence            99999762        444678999999999999999999999999985     6776 44444444333

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.01  E-value=2.8e-09  Score=102.89  Aligned_cols=141  Identities=16%  Similarity=0.156  Sum_probs=109.8

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      ..+..+...|..++..|+|++|+..|++++.........+       ......++.++|.+|..++++++|+.++.+++.
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  113 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE  113 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4577788999999999999999999999999654432211       122367899999999999999999999999999


Q ss_pred             h--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008780          476 A--------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV--------DKSSEPDATAALSKLKKQRQVKLKVRLEN  539 (554)
Q Consensus       476 ~--------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l--------~P~~~~~~~~~l~~l~~~~~~~~~~~~~~  539 (554)
                      +        +|....+++++|.++..+|++++|+..|++++++        +|.. ..+...+..+.......+++.  .
T Consensus       114 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~--~  190 (283)
T 3edt_B          114 IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV-AKTKNNLASCYLKQGKYQDAE--T  190 (283)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH-HHHHHHHHHHHHHHTCHHHHH--H
T ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcCCHHHHH--H
Confidence            8        5778999999999999999999999999999998        4432 345555555555554333333  4


Q ss_pred             HHHhhcc
Q 008780          540 SLKGCLT  546 (554)
Q Consensus       540 ~y~~~f~  546 (554)
                      .|.+++.
T Consensus       191 ~~~~~l~  197 (283)
T 3edt_B          191 LYKEILT  197 (283)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555544

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.01  E-value=1.4e-09  Score=117.91  Aligned_cols=122  Identities=15%  Similarity=0.095  Sum_probs=88.6

Q ss_pred             cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (554)
Q Consensus       411 ~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  490 (554)
                      .|++++|+..|+++++    ..|.+           ..+++++|.++..+++|++|+..++++++++|++..+++++|.+
T Consensus         2 ~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   66 (568)
T 2vsy_A            2 TADGPRELLQLRAAVR----HRPQD-----------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV   66 (568)
T ss_dssp             -----------------------CC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4789999999999999    78877           67999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          491 YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       491 ~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      +..+|++++|+..|+++++++|++ ..+...+..+.......+++.  ..|++.+...|+
T Consensus        67 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~--~~~~~al~~~p~  123 (568)
T 2vsy_A           67 RWTQQRHAEAAVLLQQASDAAPEH-PGIALWLGHALEDAGQAEAAA--AAYTRAHQLLPE  123 (568)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHCTT
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHH--HHHHHHHHhCCC
Confidence            999999999999999999999998 667777777766665444444  667777665543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.01  E-value=7.9e-09  Score=102.08  Aligned_cols=88  Identities=14%  Similarity=0.086  Sum_probs=61.3

Q ss_pred             HccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHH
Q 008780          459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRL  537 (554)
Q Consensus       459 kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~  537 (554)
                      ..+++++|+..++++++.+|+++.+|+.+|.++..+|++++|...|++|++++|++ .++...+..+..... ..+... 
T Consensus       178 ~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~~~l~~l~~~~~~~g~~~eaa~-  255 (291)
T 3mkr_A          178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH-PETLINLVVLSQHLGKPPEVTN-  255 (291)
T ss_dssp             CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHH-
T ss_pred             CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCHHHHH-
Confidence            34788888888888888888888888888888888888888888888888888887 455544444433333 222222 


Q ss_pred             HHHHHhhccccc
Q 008780          538 ENSLKGCLTRSL  549 (554)
Q Consensus       538 ~~~y~~~f~~~~  549 (554)
                       ..++++....|
T Consensus       256 -~~~~~~~~~~P  266 (291)
T 3mkr_A          256 -RYLSQLKDAHR  266 (291)
T ss_dssp             -HHHHHHHHHCT
T ss_pred             -HHHHHHHHhCC
Confidence             44555554443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.00  E-value=4.6e-10  Score=91.10  Aligned_cols=88  Identities=18%  Similarity=0.183  Sum_probs=42.9

Q ss_pred             HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCh
Q 008780          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL-LHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (554)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~-~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~  481 (554)
                      ++|..+++.|+|++|+..|+++++    ..|.+           .. +++++|.||..+++|++|+.+++++++++|++.
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   69 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQ----TEPVG-----------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP   69 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH----HCSST-----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            344445555555555555555555    44443           33 455555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       482 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                      .++++        +.+.+|+..|++++.++|+
T Consensus        70 ~~~~~--------~~~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           70 ALQAR--------KMVMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             HHHHH--------HHHHHHHHHHCCTTHHHHC
T ss_pred             HHHHH--------HHHHHHHHHHHHHhccCcc
Confidence            44433        3344444444444444443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.98  E-value=3.9e-09  Score=112.56  Aligned_cols=146  Identities=14%  Similarity=0.116  Sum_probs=103.5

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCCh---------------hHH-HHH------hhhHHHHHHHH
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD---------------EEG-KVF------VGKRNLLHLNV  453 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~---------------ee~-~~~------~~~~~~~~~nl  453 (554)
                      ..+..+...|..++..|++++|+..|++++.    ..|...               ++. ..+      ......++.++
T Consensus       241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  316 (537)
T 3fp2_A          241 NAALALCYTGIFHFLKNNLLDAQVLLQESIN----LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHR  316 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHh----cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHH
Confidence            3455566666666666666666666666665    333200               000 000      11125688999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 008780          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKL  533 (554)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~  533 (554)
                      |.++..+++|++|+..+++++.++|.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+
T Consensus       317 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~  395 (537)
T 3fp2_A          317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL-PEVPTFFAEILTDRGDFD  395 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999988 556666666665555333


Q ss_pred             HHHHHHHHHhhcccc
Q 008780          534 KVRLENSLKGCLTRS  548 (554)
Q Consensus       534 ~~~~~~~y~~~f~~~  548 (554)
                      ++.  ..|++++...
T Consensus       396 ~A~--~~~~~a~~~~  408 (537)
T 3fp2_A          396 TAI--KQYDIAKRLE  408 (537)
T ss_dssp             HHH--HHHHHHHHHH
T ss_pred             HHH--HHHHHHHHcC
Confidence            444  5666665443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.98  E-value=2.1e-09  Score=95.15  Aligned_cols=99  Identities=13%  Similarity=0.094  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-------ChH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA-------HVK-----GLYRRGMAYMALGEFEEAQRDFEMMMKV----  510 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~-------~~k-----a~~~~g~a~~~l~~~~~A~~~~~~al~l----  510 (554)
                      +..+.++|.+++++|+|++|+..|++||+++|+       +..     +|+++|.++..+|+|++|+.+|.+||++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            567899999999999999999999999999999       544     9999999999999999999999999999    


Q ss_pred             ---CCCChHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008780          511 ---DKSSEPDAT----AALSKLKKQRQVKLKVRLENSLKGCLTRS  548 (554)
Q Consensus       511 ---~P~~~~~~~----~~l~~l~~~~~~~~~~~~~~~y~~~f~~~  548 (554)
                         +|++ ..++    ..+..+...+...+.+.  ..|++.+.-.
T Consensus        91 ~e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl--~~y~kAlel~  132 (159)
T 2hr2_A           91 GELNQDE-GKLWISAVYSRALALDGLGRGAEAM--PEFKKVVEMI  132 (159)
T ss_dssp             CCTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHH
T ss_pred             ccCCCch-HHHHHHHHHhHHHHHHHCCCHHHHH--HHHHHHHhcC
Confidence               9986 4555    44444444443333443  5677765543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.98  E-value=4e-09  Score=86.19  Aligned_cols=67  Identities=16%  Similarity=0.307  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                      ..+++++|.+|+++|+|++|+.+++++++++|+++.+|+++|.++..+|++++|+..|++++++.|.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            6789999999999999999999999999999999999999999999999999999999999999764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.97  E-value=8.3e-09  Score=81.67  Aligned_cols=79  Identities=24%  Similarity=0.446  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ..+++++|.++..+++|++|+.++++++.++|.+..+++++|.++..++++++|+..|+++++++|++ ..+...+..+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~   87 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999998 55555555443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.96  E-value=6.3e-09  Score=82.38  Aligned_cols=84  Identities=26%  Similarity=0.412  Sum_probs=77.8

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..++..++|++|+..|++++.    ..|.+           ..+++++|.++.+++++++|+.++++++++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNN-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            466788999999999999999999999999    77776           678999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcC
Q 008780          477 NPAHVKGLYRRGMAYMALG  495 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~  495 (554)
                      +|++..+++++|.++..+|
T Consensus        73 ~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CTTCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999999998764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.96  E-value=2e-09  Score=88.37  Aligned_cols=101  Identities=16%  Similarity=0.125  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS--SEPDATAALSK  524 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~~l~~  524 (554)
                      ..+++++|.++..+++|++|+..++++++++|.+..+++.+|.++..++++++|+..|+++++++|+  + ..+...+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~l~~   84 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN-KDVWAAKAD   84 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch-HHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999999999999999999999  8 567777777


Q ss_pred             HHHHH-HHHHHHHHHHHHHhhcccccc
Q 008780          525 LKKQR-QVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       525 l~~~~-~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      +.... ...+++.  +.|+++....|.
T Consensus        85 ~~~~~~~~~~~A~--~~~~~~~~~~p~  109 (112)
T 2kck_A           85 ALRYIEGKEVEAE--IAEARAKLEHHH  109 (112)
T ss_dssp             HHTTCSSCSHHHH--HHHHHHGGGCCC
T ss_pred             HHHHHhCCHHHHH--HHHHHHhhcccC
Confidence            76666 5334444  678888877664

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.96  E-value=5.6e-09  Score=103.29  Aligned_cols=126  Identities=10%  Similarity=0.112  Sum_probs=107.4

Q ss_pred             hhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHH
Q 008780          407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR  486 (554)
Q Consensus       407 ~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~  486 (554)
                      .+...|++++|+..|++++.    ..|.+           ..++.++|.++.+++++++|+..+++++..+|.+..+++.
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  211 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALE----MNPND-----------AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK  211 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            58889999999999999999    67776           6789999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          487 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       487 ~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      +|.++..+|++++|+..|+++++++|++ ..+...+..+.......+++.  ..|+++....|.
T Consensus       212 l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~g~~~~A~--~~~~~a~~~~~~  272 (327)
T 3cv0_A          212 LGATLANGNRPQEALDAYNRALDINPGY-VRVMYNMAVSYSNMSQYDLAA--KQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhccHHHHH--HHHHHHHHhCCc
Confidence            9999999999999999999999999998 566666766666555333444  566666554443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.95  E-value=6.9e-09  Score=89.09  Aligned_cols=101  Identities=13%  Similarity=0.100  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ...++++|.++++.++|++|+..+.+++.++|.++.+++++|.++..++++++|+..|+++++++|++ ..+...+..+.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~   87 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQ   87 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-HHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999998 66777777766


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccc
Q 008780          527 KQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       527 ~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      ......+++.  ..|++.+...|+
T Consensus        88 ~~~~~~~~A~--~~~~~a~~~~p~  109 (137)
T 3q49_B           88 LEMESYDEAI--ANLQRAYSLAKE  109 (137)
T ss_dssp             HHTTCHHHHH--HHHHHHHHHHHH
T ss_pred             HHHhhHHHHH--HHHHHHHHHChh
Confidence            6655334444  567776655443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.94  E-value=4.1e-09  Score=110.72  Aligned_cols=122  Identities=16%  Similarity=0.070  Sum_probs=95.7

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+...|..++..|+|++|+..|++|++.+....+...      .......|.|+|.+|..+|+|++|+.++++++++.
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~------~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~  124 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA------EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC  124 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC------TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc------chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            455678999999999999999999999996544322110      01125688999999999999999999999999873


Q ss_pred             --------CCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          478 --------PAHVKGLYRRGMAYMALG--EFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       478 --------p~~~ka~~~~g~a~~~l~--~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                              +..+.++..+|.++..++  +|++|+.+|++|++++|++ ..+...+..+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~-~~~~~~~~~~~  182 (472)
T 4g1t_A          125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN-PEFTSGLAIAS  182 (472)
T ss_dssp             HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHH
T ss_pred             HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence                    456788999998887764  7999999999999999998 55555555443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.92  E-value=8.8e-09  Score=99.29  Aligned_cols=108  Identities=15%  Similarity=0.137  Sum_probs=94.5

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC-CCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~-p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (554)
                      ...+..+...|..++..|++++|+..|++|+....... +.+        .....++.++|.+|..+|++++|+.+++++
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  153 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH--------PDVAKQLNNLALLCQNQGKAEEVEYYYRRA  153 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34567888999999999999999999999999654432 222        123678999999999999999999999999


Q ss_pred             Hhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          474 LDA--------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       474 l~~--------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      +.+        +|....+++.+|.++..+|++++|+..|++++++
T Consensus       154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999        7778899999999999999999999999999987

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.91  E-value=7.7e-09  Score=90.30  Aligned_cols=102  Identities=14%  Similarity=0.188  Sum_probs=85.7

Q ss_pred             CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhC-C-CChHHHHH
Q 008780          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVLDAN-P-AHVKGLYR  486 (554)
Q Consensus       412 g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~al~~~-p-~~~ka~~~  486 (554)
                      .....+.+.|.+++.    ..+.+           ..+.+++|.|+.+.+   +..+++..++.+++.+ | .+..++|+
T Consensus        12 ~~l~~~~~~y~~e~~----~~~~~-----------~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~   76 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKA----AGSVS-----------KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFY   76 (152)
T ss_dssp             HHHHHHHHHHHHHHH----TTCCC-----------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc----cCCCc-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHH
Confidence            345667788888877    55655           678999999999988   6779999999999999 7 67999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780          487 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (554)
Q Consensus       487 ~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~  529 (554)
                      +|.+++.+++|++|+++++++|+++|+| ..+......+..+.
T Consensus        77 LAv~~~kl~~Y~~A~~y~~~lL~ieP~n-~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           77 LAVGNYRLKEYEKALKYVRGLLQTEPQN-NQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHH
Confidence            9999999999999999999999999998 55665555555444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.90  E-value=7.1e-09  Score=102.22  Aligned_cols=108  Identities=15%  Similarity=0.129  Sum_probs=92.9

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      ..+..+...|..++..|+|++|+..|++|++.+..... +       ......+++|+|.+|.++++|++|+.+++++++
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~-------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~  224 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-N-------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-c-------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            45667899999999999999999999999987665422 2       223467999999999999999999999999998


Q ss_pred             hCCCC------hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 008780          476 ANPAH------VKGLYRRGMAYMALG-EFEEAQRDFEMMMKVD  511 (554)
Q Consensus       476 ~~p~~------~ka~~~~g~a~~~l~-~~~~A~~~~~~al~l~  511 (554)
                      +.+..      +.+++++|.++..+| .+++|+..|++|+.+.
T Consensus       225 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          225 ISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            86543      889999999999999 5799999999999873

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.90  E-value=1.5e-08  Score=83.29  Aligned_cols=68  Identities=19%  Similarity=0.340  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ...++++|.+++.+++|++|+..++++++++|.++.+++++|.++..+|++++|+..|+++++++|++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            56889999999999999999999999999999999999999999999999999999999999999987

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.89  E-value=1.7e-08  Score=88.21  Aligned_cols=108  Identities=19%  Similarity=0.185  Sum_probs=92.6

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      ...+..+...|..++..|+|++|+..|++++........         ......++.++|.++..++++++|+.++++++
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   76 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERIAYSNLGNAYIFLGEFETASEYYKKTL   76 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456788899999999999999999999999996543211         12235789999999999999999999999999


Q ss_pred             hhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          475 DANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       475 ~~~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      .+.+..      ..+++++|.++..+|++++|+..+++++++.
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  119 (164)
T 3ro3_A           77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  119 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            886543      6789999999999999999999999999874

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.89  E-value=4.2e-09  Score=103.76  Aligned_cols=108  Identities=14%  Similarity=0.046  Sum_probs=86.6

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChh-----------------HHHHH------hhhHHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE-----------------EGKVF------VGKRNLLHLNVA  454 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~e-----------------e~~~~------~~~~~~~~~nla  454 (554)
                      +..+...|..+...|++++|+..|++++.    ..|....                 ....+      ......+++++|
T Consensus       151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~----~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la  226 (287)
T 3qou_A          151 GEIGLLLAETLIALNRSEDAEAVLXTIPL----QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLA  226 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTSCG----GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHhCch----hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHH
Confidence            45667888888899999999888887755    3331110                 00000      111256899999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780          455 ACLLKLGECRKSIEACNKVLDANPAH--VKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (554)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~~p~~--~ka~~~~g~a~~~l~~~~~A~~~~~~al~  509 (554)
                      .++..+|++++|+..+.++++.+|++  ..++.+++.++..+|+.++|...|++++.
T Consensus       227 ~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          227 LQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            99999999999999999999999998  99999999999999999999999999986

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.89  E-value=5.3e-09  Score=103.99  Aligned_cols=106  Identities=10%  Similarity=0.027  Sum_probs=56.0

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+.+.|+.+...|+|++|+.+|++|+.+.....  +.       .....++.|+|.+|.. ++|++|+.++++++++
T Consensus        75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~-------~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~  144 (307)
T 2ifu_A           75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG--TP-------DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV  144 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CH-------HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CH-------HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence            345556666666677777777777777766432211  10       0113445555555555 5555555555555555


Q ss_pred             CCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780          477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (554)
Q Consensus       477 ~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P  512 (554)
                      .+..      ..++.++|.++..+|+|++|+..|++++++.|
T Consensus       145 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  186 (307)
T 2ifu_A          145 FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK  186 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            4322      34555555555555555555555555555533

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=98.88  E-value=1.2e-09  Score=111.85  Aligned_cols=86  Identities=19%  Similarity=0.122  Sum_probs=74.4

Q ss_pred             CCCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcc
Q 008780          167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE  246 (554)
Q Consensus       167 ~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~  246 (554)
                      ..++.||.|++||+++ .||+.|+++ .++|+.|.+|.|+++|||+++|.||++|++++|.++....|+...    .+++
T Consensus       159 ~~~~~gD~V~i~y~g~-~dG~~fd~~-~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~----laGk  232 (392)
T 1t11_A          159 EAAENGKRVSIDFVGS-IDGVEFEGG-KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN----LKGK  232 (392)
T ss_dssp             CCCCTTCEEEEEEEEE-SSSSCCTTC-EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT----TSSC
T ss_pred             CCCCCCCEEEEEEEEE-ECCEEccCC-CccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCC----CCCC
Confidence            4588999999999997 699999876 468999999999999999999999999999999997445566432    2578


Q ss_pred             eEEEEEeeeeee
Q 008780          247 EVHFEVELVHLI  258 (554)
Q Consensus       247 ~l~~~v~l~~~~  258 (554)
                      +++|+|+|+++.
T Consensus       233 ~~~F~V~v~~i~  244 (392)
T 1t11_A          233 AAKFAIKVNKVE  244 (392)
T ss_dssp             EEEECCCEEEEE
T ss_pred             eEEEEEEEEEEE
Confidence            999999999995

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.88  E-value=2.2e-08  Score=108.34  Aligned_cols=146  Identities=13%  Similarity=0.121  Sum_probs=96.4

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhH----------------H-HHHhh------hHHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE----------------G-KVFVG------KRNLLHLNVA  454 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee----------------~-~~~~~------~~~~~~~nla  454 (554)
                      ...+...|..+.+.|++++|+..|++++.    ..|.+...                . +.+..      ....++++++
T Consensus       407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  482 (597)
T 2xpi_A          407 GPAWIGFAHSFAIEGEHDQAISAYTTAAR----LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG  482 (597)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            45667778888888888888888888777    45544210                0 00110      1144677777


Q ss_pred             HHHHHccCHHHHHHHHHHHHhh------CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          455 ACLLKLGECRKSIEACNKVLDA------NPAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~------~p~~-~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      .+|.+.|++++|+..+++++++      +|++ ..+|+.+|.++...|++++|+..|+++++++|++ ..+...+..+..
T Consensus       483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~  561 (597)
T 2xpi_A          483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND-ANVHTAIALVYL  561 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHH
Confidence            7888888888888888887777      5554 6777788888888888888888888888887776 556666666655


Q ss_pred             HHHHHHHHHHHHHHHhhcccccc
Q 008780          528 QRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       528 ~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      .....+++.  ..|++++...|+
T Consensus       562 ~~g~~~~A~--~~~~~~l~~~p~  582 (597)
T 2xpi_A          562 HKKIPGLAI--THLHESLAISPN  582 (597)
T ss_dssp             HTTCHHHHH--HHHHHHHHHCTT
T ss_pred             HhCCHHHHH--HHHHHHHhcCCC
Confidence            555333444  566666655543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.88  E-value=2.9e-08  Score=81.98  Aligned_cols=101  Identities=10%  Similarity=0.076  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ...++++|.++...++|++|+..+++++..+|.++.+++.+|.++..++++++|+..++++++++|++ ..+...+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~   82 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999998 56666666665


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccc
Q 008780          527 KQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       527 ~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      ......+++.  ..|++.....|.
T Consensus        83 ~~~~~~~~A~--~~~~~~~~~~~~  104 (118)
T 1elw_A           83 EFLNRFEEAK--RTYEEGLKHEAN  104 (118)
T ss_dssp             HHTTCHHHHH--HHHHHHHTTCTT
T ss_pred             HHHhhHHHHH--HHHHHHHHcCCC
Confidence            5555344444  677777666553

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.86  E-value=9.4e-09  Score=91.60  Aligned_cols=101  Identities=14%  Similarity=0.131  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhh------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDA------------------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM  508 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~------------------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al  508 (554)
                      +..+.++|.++++.|+|.+|+..|.+++.+                  +|.++.+|+++|.+|+.+|+|++|+.++++|+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            668899999999999999999999999999                  78888999999999999999999999999999


Q ss_pred             HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          509 KVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       509 ~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      +++|++ ..+...+..+...+...+.+.  ..|++.+...|+
T Consensus        91 ~~~p~~-~~a~~~~g~~~~~~g~~~~A~--~~~~~al~l~p~  129 (162)
T 3rkv_A           91 KREETN-EKALFRRAKARIAAWKLDEAE--EDLKLLLRNHPA  129 (162)
T ss_dssp             HHSTTC-HHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHCGG
T ss_pred             hcCCcc-hHHHHHHHHHHHHHhcHHHHH--HHHHHHHhcCCC
Confidence            999998 566666666665555344444  567766655543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.85  E-value=1.5e-08  Score=107.07  Aligned_cols=73  Identities=12%  Similarity=0.122  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHH---ccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008780          449 LHLNVAACLLK---LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  522 (554)
Q Consensus       449 ~~~nla~~~~k---l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l  522 (554)
                      +++++|.++..   +|++++|+..+++++..+|++..+++.+|.++..+|++++|+..|+++++++|++ ..+...+
T Consensus       414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~  489 (514)
T 2gw1_A          414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM-EEKLQAI  489 (514)
T ss_dssp             HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH-HHHHHHH
T ss_pred             HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc-HHHHHHH
Confidence            66677777777   7777777777777777777777777777777777777777777777777777765 4444444

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.85  E-value=3.6e-08  Score=106.62  Aligned_cols=132  Identities=17%  Similarity=0.095  Sum_probs=110.3

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+...|..+++.|++++|+..|+++++    +.|.+           ..++++++.+|.+.|++++|+..+++++..+
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  437 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSST----MDPQF-----------GPAWIGFAHSFAIEGEHDQAISAYTTAARLF  437 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44567788899999999999999999998    67776           6689999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTR  547 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~  547 (554)
                      |.+..+++.+|.++...|++++|+..|+++++++|.+ ..+...+..+..+....+++.  ..|++++..
T Consensus       438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~--~~~~~~~~~  504 (597)
T 2xpi_A          438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD-PLLLNELGVVAFNKSDMQTAI--NHFQNALLL  504 (597)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHHH--HHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCHHHHH--HHHHHHHHh
Confidence            9999999999999999999999999999999999987 566666666655554333444  567666554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.85  E-value=2.3e-08  Score=88.51  Aligned_cols=98  Identities=14%  Similarity=0.104  Sum_probs=87.5

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+...|..++..|+|++|+..|++++.    +.|.+           ..+++++|.|+..+|++++|+.++.++++++
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~  111 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIE----LDKKY-----------IKGYYRRAASNMALGKFRAALRDYETVVKVK  111 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            45677899999999999999999999999    77776           6789999999999999999999999999999


Q ss_pred             CCChHHHHHHHHH--HHHcCCHHHHHHHHHHHHHh
Q 008780          478 PAHVKGLYRRGMA--YMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       478 p~~~ka~~~~g~a--~~~l~~~~~A~~~~~~al~l  510 (554)
                      |.+..++..++.+  +...+++++|+..+.++..+
T Consensus       112 p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          112 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            9999988555544  88889999999999988765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.84  E-value=2.3e-08  Score=102.75  Aligned_cols=105  Identities=16%  Similarity=0.235  Sum_probs=95.2

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      ...+..+...|..++..|+|++|+..|++++.    +.|.+.       .....+++++|.+|..+|+|++|+.++++++
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQ----AGTEDL-------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH----hcccCh-------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45678888999999999999999999999999    677662       2235689999999999999999999999999


Q ss_pred             hh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          475 DA------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       475 ~~------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      ++      +|....+++.+|.++..+|++++|+..|++++++
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  155 (411)
T 4a1s_A          114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL  155 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            98      6778899999999999999999999999999998

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.84  E-value=2.7e-08  Score=101.84  Aligned_cols=127  Identities=15%  Similarity=0.144  Sum_probs=95.8

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      ...+..+...|..++..|++..|+..|++|++........        ......+++++|.+|..+|+|++|+.++.+++
T Consensus       140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  211 (383)
T 3ulq_A          140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAY  211 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4467888899999999999999999999999965543211        12236788999999999999999999999999


Q ss_pred             hhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-CCChHHHHHHHHHHHHHHH
Q 008780          475 DANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----D-KSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       475 ~~~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l-----~-P~~~~~~~~~l~~l~~~~~  530 (554)
                      ++.+..      +.+++++|.++..+|++++|+..|++|+++     + |.. ..+...+..+.....
T Consensus       212 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~l~~~~~~~g  278 (383)
T 3ulq_A          212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL-PQAYFLITQIHYKLG  278 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH-HHHHHHHHHHHHHTT
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH-HHHHHHHHHHHHHCC
Confidence            875433      358899999999999999999999999984     4 433 444444555444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.84  E-value=2.7e-08  Score=84.31  Aligned_cols=100  Identities=21%  Similarity=0.242  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHH
Q 008780          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHV---KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAALS  523 (554)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~---ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~--~~~~~~l~  523 (554)
                      .++++|.+++..++|++|+..+++++..+|++.   .+++.+|.++..+|+|++|+..|+++++++|++.  ..+...+.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            578899999999999999999999999999998   8999999999999999999999999999999873  23445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          524 KLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       524 ~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      .+.......+++.  ..|+++....|+
T Consensus        84 ~~~~~~g~~~~A~--~~~~~~~~~~p~  108 (129)
T 2xev_A           84 LSQYGEGKNTEAQ--QTLQQVATQYPG  108 (129)
T ss_dssp             HHHHHTTCHHHHH--HHHHHHHHHSTT
T ss_pred             HHHHHcCCHHHHH--HHHHHHHHHCCC
Confidence            5555444444444  677777766554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.83  E-value=2.4e-08  Score=84.66  Aligned_cols=100  Identities=16%  Similarity=0.180  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ...++++|.++...++|++|+..+++++..+|.+..+++.+|.++..++++++|+..|+++++++|++ ..+...+..+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~   94 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999997 56666666666


Q ss_pred             HHHHHHHHHHHHHHHHhhccccc
Q 008780          527 KQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       527 ~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      ......+++.  ..|++.+...|
T Consensus        95 ~~~~~~~~A~--~~~~~~~~~~p  115 (133)
T 2lni_A           95 EAMKDYTKAM--DVYQKALDLDS  115 (133)
T ss_dssp             HHTTCHHHHH--HHHHHHHHHCG
T ss_pred             HHHhhHHHHH--HHHHHHHHhCC
Confidence            5555334444  56776665544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.82  E-value=2.6e-08  Score=80.49  Aligned_cols=66  Identities=21%  Similarity=0.463  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780          450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       450 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k-a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~  515 (554)
                      .+++|.++++.++|++|+..++++++.+|+++. +++.+|.++..+|++++|+..|+++++++|++.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   69 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP   69 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            367899999999999999999999999999999 999999999999999999999999999999983

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.82  E-value=5.4e-08  Score=101.26  Aligned_cols=125  Identities=9%  Similarity=0.067  Sum_probs=98.9

Q ss_pred             hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc-cCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 008780          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  470 (554)
Q Consensus       392 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~-~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  470 (554)
                      .+.+..+....+.+...-..|+|++|+..|+++|+.... +.+.+.        .....+.|+|.+|..+|+|++|+.++
T Consensus       292 ~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp--------~~a~~~~nLa~~y~~~g~~~eA~~~~  363 (433)
T 3qww_A          292 RDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNV--------YMLHMMYQAMGVCLYMQDWEGALKYG  363 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSH--------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhch--------HHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence            334445555666666666789999999999999997654 445542        24678999999999999999999999


Q ss_pred             HHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHH
Q 008780          471 NKVLDA--------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDATAALSKL  525 (554)
Q Consensus       471 ~~al~~--------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l-----~P~~~~~~~~~l~~l  525 (554)
                      +++|++        .|+-+..++++|.+|..+|+|++|+..|++|+++     -|++ +.+......|
T Consensus       364 ~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~l~~~l  430 (433)
T 3qww_A          364 QKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH-PYISEIKQEI  430 (433)
T ss_dssp             HHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC-hHHHHHHHHH
Confidence            999976        3445678999999999999999999999999996     6777 5555544444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.82  E-value=4e-08  Score=97.54  Aligned_cols=136  Identities=10%  Similarity=-0.021  Sum_probs=76.8

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH-------------------
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-------------------  459 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k-------------------  459 (554)
                      ..+...|..+.+.|++++|...|++|++    +.|.+.+          .++.+++.++.+                   
T Consensus       100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p  165 (308)
T 2ond_A          100 LLYFAYADYEESRMKYEKVHSIYNRLLA----IEDIDPT----------LVYIQYMKFARRAEGIKSGRMIFKKAREDAR  165 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHT----SSSSCTH----------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh----ccccCcc----------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence            4556677777778888888888888887    6665522          133333333333                   


Q ss_pred             ----------------ccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHH
Q 008780          460 ----------------LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV---DKSSEPDATA  520 (554)
Q Consensus       460 ----------------l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l---~P~~~~~~~~  520 (554)
                                      +|++++|+..++++++.+|+++.+|..++..+..+|++++|+..|++|+..   +|++...++.
T Consensus       166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~  245 (308)
T 2ond_A          166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA  245 (308)
T ss_dssp             CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence                            456666666666666666666666666666666666666666666666663   3332234444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          521 ALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       521 ~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      .+..+.......+.+.  ..++++....|+
T Consensus       246 ~~~~~~~~~g~~~~a~--~~~~~a~~~~p~  273 (308)
T 2ond_A          246 RFLAFESNIGDLASIL--KVEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHHHHHSCHHHHH--HHHHHHHHHTTT
T ss_pred             HHHHHHHHcCCHHHHH--HHHHHHHHHccc
Confidence            4444433333222333  556666555554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.80  E-value=3.3e-08  Score=96.91  Aligned_cols=109  Identities=16%  Similarity=0.145  Sum_probs=93.4

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC-CCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~-p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (554)
                      ...+..+...|..++..|++++|+..|++++....... +.+        .....++.++|.++..++++++|+.+++++
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  179 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH--------PDVAKQLNNLALLCQNQGKYEEVEYYYQRA  179 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34566788999999999999999999999999654331 111        123678999999999999999999999999


Q ss_pred             Hhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          474 LDA--------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       474 l~~--------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      +.+        +|....+++.+|.++..+|++++|+..|++++++.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA  225 (311)
T ss_dssp             HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            998        77788899999999999999999999999999863

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.80  E-value=2.8e-08  Score=97.39  Aligned_cols=142  Identities=16%  Similarity=0.164  Sum_probs=107.9

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      ...+..+...|..++..|++++|+..|++++.........+       ......++.++|.+|..++++++|+.++.+++
T Consensus        66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  138 (311)
T 3nf1_A           66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL  138 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            34566788999999999999999999999999654431111       11236789999999999999999999999999


Q ss_pred             hhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 008780          475 DAN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV--------DKSSEPDATAALSKLKKQRQVKLKVRLE  538 (554)
Q Consensus       475 ~~~--------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l--------~P~~~~~~~~~l~~l~~~~~~~~~~~~~  538 (554)
                      .+.        |....+++.+|.++..+|++++|+..|++++++        +|.. ..+...+..+.......+++.  
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~--  215 (311)
T 3nf1_A          139 EIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV-AKTKNNLASCYLKQGKFKQAE--  215 (311)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHH-HHHHHHHHHHHHHHTCHHHHH--
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHHcCCHHHHH--
Confidence            884        667889999999999999999999999999998        4432 334445555554444333333  


Q ss_pred             HHHHhhcc
Q 008780          539 NSLKGCLT  546 (554)
Q Consensus       539 ~~y~~~f~  546 (554)
                      ..|++++.
T Consensus       216 ~~~~~al~  223 (311)
T 3nf1_A          216 TLYKEILT  223 (311)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            45555554

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.78  E-value=7.3e-08  Score=95.67  Aligned_cols=101  Identities=12%  Similarity=0.043  Sum_probs=87.0

Q ss_pred             HHHHhhhhhh-------hcCCH-------HHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHH
Q 008780          400 KIRVTGNRLF-------KEGKF-------ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK  465 (554)
Q Consensus       400 ~~~~~G~~~~-------~~g~~-------~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~  465 (554)
                      .+...|..+.       +.|++       ++|+..|++|+..   +.|.+           ..+|.++|.++.++|++++
T Consensus        52 ~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~---~~p~~-----------~~~~~~~~~~~~~~~~~~~  117 (308)
T 2ond_A           52 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST---LLKKN-----------MLLYFAYADYEESRMKYEK  117 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT---TTTTC-----------HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH---hCccc-----------HHHHHHHHHHHHhcCCHHH
Confidence            3445555544       45775       8999999999982   26766           6799999999999999999


Q ss_pred             HHHHHHHHHhhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          466 SIEACNKVLDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       466 A~~~~~~al~~~p~~~k-a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      |+..++++++++|.++. +|..+|.++...|++++|+..|++|++++|.+
T Consensus       118 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~  167 (308)
T 2ond_A          118 VHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred             HHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence            99999999999999987 99999999999999999999999999999876

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.76  E-value=6e-08  Score=95.60  Aligned_cols=106  Identities=18%  Similarity=0.252  Sum_probs=93.3

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..++..|+|++|+..|++++.    ..|.+.       .....++.++|.++..++++++|+.++++++.+
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   72 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDL-------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   72 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHh----hCcccH-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            355778899999999999999999999999    667652       223578999999999999999999999999987


Q ss_pred             ------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          477 ------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       477 ------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                            .+..+.+++.+|.++..+|++++|+..|++++++.+.
T Consensus        73 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  115 (338)
T 3ro2_A           73 ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  115 (338)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence                  5566889999999999999999999999999998653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.76  E-value=4.4e-08  Score=96.44  Aligned_cols=124  Identities=12%  Similarity=0.095  Sum_probs=94.5

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-  476 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-  476 (554)
                      +..+...|..++..++|++|+..|++|+.    +.....+.     .....+++++|.+|..+|+|++|+.+++++++. 
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~----~~~~~~~~-----~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  185 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLN----QQLTGIDV-----YQNLYIENAIANIYAENGYLKKGIDLFEQILKQL  185 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHH----TCCCCSCT-----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHH----HhcccccH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            44555689999999999999999999999    33222111     123568999999999999999999999999953 


Q ss_pred             ------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHHHH
Q 008780          477 ------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-----EPDATAALSKLKKQRQ  530 (554)
Q Consensus       477 ------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~-----~~~~~~~l~~l~~~~~  530 (554)
                            .+..+.+++++|.+|..+|+|++|+..+++|+++.+..     ...+...+..+...+.
T Consensus       186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g  250 (293)
T 3u3w_A          186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE  250 (293)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTT
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhC
Confidence                  23446699999999999999999999999999986432     1334445555554444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.76  E-value=3.3e-08  Score=97.38  Aligned_cols=107  Identities=14%  Similarity=0.123  Sum_probs=90.4

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..++..|+|++|+..|++|+...... +.+.       .....+++|+|.+|.++++|++|+.++++++.+
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-~~~~-------~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNE-------EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-Cccc-------cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            56788899999999999999999999999755433 3321       112368999999999999999999999999988


Q ss_pred             CCC------ChHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 008780          477 NPA------HVKGLYRRGMAYMALGEFEEA-QRDFEMMMKVD  511 (554)
Q Consensus       477 ~p~------~~ka~~~~g~a~~~l~~~~~A-~~~~~~al~l~  511 (554)
                      .+.      .+.+++++|.++..+|++++| ...|++|+.+.
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            642      278999999999999999999 77899999863

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=8e-08  Score=83.12  Aligned_cols=101  Identities=13%  Similarity=0.101  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~  523 (554)
                      ...++++|.+++..++|.+|+..++++++++|++   ..+++++|.++..++++++|+..|+++++++|++ ..+...+.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a  106 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VKALYRRS  106 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HHHHHHHH
Confidence            6788999999999999999999999999999988   9999999999999999999999999999999998 66666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          524 KLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       524 ~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      .+.......+++.  ..|++.+...|.
T Consensus       107 ~~~~~~~~~~~A~--~~~~~al~~~p~  131 (148)
T 2dba_A          107 QALEKLGRLDQAV--LDLQRCVSLEPK  131 (148)
T ss_dssp             HHHHHHTCHHHHH--HHHHHHHHHCSS
T ss_pred             HHHHHcCCHHHHH--HHHHHHHHcCCC
Confidence            6666555344444  667776655443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.76  E-value=5.5e-08  Score=89.20  Aligned_cols=106  Identities=11%  Similarity=0.121  Sum_probs=91.2

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..++..|+|++|+..|++++........         ......+++++|.+|..+|++++|+.++.+++.+
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5678889999999999999999999999997654322         1223678999999999999999999999999998


Q ss_pred             ---CC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          477 ---NP----AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       477 ---~p----~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                         .+    ....+++++|.++..+|++++|+..+++++.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A           96 LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence               33    346789999999999999999999999999873

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.76  E-value=1.1e-07  Score=79.84  Aligned_cols=101  Identities=17%  Similarity=0.180  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      ....+.++|.++...++|++|+..+++++..+|.++.+++.+|.++..++++++|+..|+++++++|++ ..+...+..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~   89 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-SKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-HHHHHHHHHH
Confidence            367899999999999999999999999999999999999999999999999999999999999999998 5666666666


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccc
Q 008780          526 KKQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       526 ~~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      .......+++.  ..|++.+...|
T Consensus        90 ~~~~~~~~~A~--~~~~~~~~~~p  111 (131)
T 2vyi_A           90 LSSLNKHVEAV--AYYKKALELDP  111 (131)
T ss_dssp             HHHTTCHHHHH--HHHHHHHHHST
T ss_pred             HHHhCCHHHHH--HHHHHHHhcCc
Confidence            55555334444  56766665544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.76  E-value=3.2e-08  Score=98.36  Aligned_cols=108  Identities=10%  Similarity=0.032  Sum_probs=91.5

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      ..+..+.+.|..+.. |+|++|+.+|++|+.......  +       ......++.|+|.+|.++|+|++|+.++++++.
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  183 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--R-------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKS  183 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--C-------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            346778899999998 999999999999999544321  1       112367899999999999999999999999999


Q ss_pred             hCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          476 ANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       476 ~~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +.|.+      ..+++.+|.++..+|++++|+..|++++ ++|+.
T Consensus       184 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence            87644      3588999999999999999999999999 99965

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.75  E-value=1.1e-07  Score=79.29  Aligned_cols=100  Identities=19%  Similarity=0.282  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ..+++++|.++...+++++|+..+.+++..+|.+..+++.+|.++...+++++|+..|+++++++|.+ ..+...+..+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~   87 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999987 55666666655


Q ss_pred             HHHHHHHHHHHHHHHHhhccccc
Q 008780          527 KQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       527 ~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      ......+++.  ..|++++...|
T Consensus        88 ~~~~~~~~A~--~~~~~~~~~~~  108 (125)
T 1na0_A           88 YKQGDYDEAI--EYYQKALELDP  108 (125)
T ss_dssp             HHTTCHHHHH--HHHHHHHHHCT
T ss_pred             HHhcCHHHHH--HHHHHHHHhCC
Confidence            5544334444  56777665544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.75  E-value=4.3e-08  Score=100.20  Aligned_cols=108  Identities=14%  Similarity=0.061  Sum_probs=95.6

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      ..+..+...|..++..|+|++|+..|++|++.......         ......++.|+|.||..+|++++|+.++++++.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            46778889999999999999999999999996544321         123467899999999999999999999999999


Q ss_pred             -----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780          476 -----ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (554)
Q Consensus       476 -----~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P  512 (554)
                           .+|..+.+++.+|.++..+|++++|+..+++|+++.+
T Consensus       251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence                 7888899999999999999999999999999999854

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.73  E-value=6.4e-08  Score=98.90  Aligned_cols=141  Identities=13%  Similarity=0.035  Sum_probs=106.0

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      ...+..+...|..++..|++..|+..|++|++........        ......+++++|.||..+|+|++|+.++.+++
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  209 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL  209 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4567778888888888888999999998888855432211        11246789999999999999999999999999


Q ss_pred             hhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008780          475 DANP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMK-----VDKSSEPDATAALSKLKKQRQVKLKVRLENSLKG  543 (554)
Q Consensus       475 ~~~p------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~-----l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~  543 (554)
                      ++.+      ....+++++|.++..+|++++|+..|++|++     .+|.. ..+...+..+.......+++.  ..|++
T Consensus       210 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~--~~~~~  286 (378)
T 3q15_A          210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAF--QFIEE  286 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHH--HHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHH--HHHHH
Confidence            8743      2356899999999999999999999999999     66664 555555666655555333333  45555


Q ss_pred             hcc
Q 008780          544 CLT  546 (554)
Q Consensus       544 ~f~  546 (554)
                      .+.
T Consensus       287 al~  289 (378)
T 3q15_A          287 GLD  289 (378)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.73  E-value=9.2e-09  Score=109.01  Aligned_cols=102  Identities=14%  Similarity=0.121  Sum_probs=90.3

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+..+|..+++.|+|++|+..|++|++    ++|.+           ..+++++|.+|.++++|++|+.+++++++++
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~-----------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~  104 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIE----LDKKY-----------IKGYYRRAASNMALGKFRAALRDYETVVKVK  104 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            56778999999999999999999999999    88887           6799999999999999999999999999999


Q ss_pred             CCChHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 008780          478 PAHVKGLYRRGMA--YMALGEFEEAQRDFE-----------MMMKVDKSS  514 (554)
Q Consensus       478 p~~~ka~~~~g~a--~~~l~~~~~A~~~~~-----------~al~l~P~~  514 (554)
                      |++..+++.++.+  +...+++++|++.++           +++.++|+.
T Consensus       105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999999  888999999999999           888887754

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.72  E-value=2.6e-07  Score=89.46  Aligned_cols=77  Identities=16%  Similarity=0.147  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHH
Q 008780          447 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKSSEPDA  518 (554)
Q Consensus       447 ~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~  518 (554)
                      ..+++++|.+|..    .+++++|+.+++++++.+  ++.+++++|.++..    .+++++|+..|++|+++++   ..+
T Consensus        74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a  148 (273)
T 1ouv_A           74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND---GDG  148 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---HHH
T ss_pred             HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc---HHH
Confidence            3456666666666    666666666666666653  56666666666666    6666666666666666542   234


Q ss_pred             HHHHHHHHHH
Q 008780          519 TAALSKLKKQ  528 (554)
Q Consensus       519 ~~~l~~l~~~  528 (554)
                      ...+..+...
T Consensus       149 ~~~lg~~~~~  158 (273)
T 1ouv_A          149 CTILGSLYDA  158 (273)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            4444444443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.72  E-value=1.4e-07  Score=98.30  Aligned_cols=126  Identities=10%  Similarity=0.107  Sum_probs=100.3

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc-cCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~-~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (554)
                      ...+.........+.++|+|++|+..|+++++.... +.+.+        ......+.|+|.+|..+|+|++|+.++.++
T Consensus       284 ~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h--------~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~  355 (429)
T 3qwp_A          284 WKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDIN--------IYQLKVLDCAMDACINLGLLEEALFYGTRT  355 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTS--------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccc--------hHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            344556666677788899999999999999985443 33444        224678999999999999999999999999


Q ss_pred             HhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHH
Q 008780          474 LDAN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDATAALSKLKKQR  529 (554)
Q Consensus       474 l~~~--------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l-----~P~~~~~~~~~l~~l~~~~  529 (554)
                      |++.        |.-+..++++|.+|..+|++++|+..|++|+++     -|++ +.+...+..|....
T Consensus       356 L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~~~~~l~~~~  423 (429)
T 3qwp_A          356 MEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH-SLIEDLILLLEECD  423 (429)
T ss_dssp             HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS-HHHHHHHHHHHHHH
T ss_pred             HHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHH
Confidence            9762        444668999999999999999999999999996     6777 56666666555544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.72  E-value=6.5e-08  Score=98.64  Aligned_cols=106  Identities=18%  Similarity=0.252  Sum_probs=93.6

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..++..|+|++|+..|++++.    +.|.+.       .....++.++|.+|..+++|++|+.++++++.+
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   76 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDL-------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   76 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHh----cCcccH-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            356778999999999999999999999999    667652       223578999999999999999999999999987


Q ss_pred             ------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          477 ------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       477 ------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                            .|..+.+++.+|.++..+|++++|+..|++++++.|.
T Consensus        77 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  119 (406)
T 3sf4_A           77 ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  119 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence                  4566889999999999999999999999999998663

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.71  E-value=6.9e-08  Score=98.73  Aligned_cols=108  Identities=10%  Similarity=0.106  Sum_probs=94.4

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      ...+..+...|..+...|+|++|+..|++|++......  +       ......++.|+|.||..+|+|++|+.++++++
T Consensus       181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  251 (383)
T 3ulq_A          181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--Q-------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI  251 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--C-------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34567888999999999999999999999999654431  1       12336789999999999999999999999999


Q ss_pred             h-----hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          475 D-----AN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       475 ~-----~~-p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      +     .+ |..+.+++++|.++..+|++++|+..|++|+++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  294 (383)
T 3ulq_A          252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS  294 (383)
T ss_dssp             HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            9     46 8889999999999999999999999999999984

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.71  E-value=1.7e-07  Score=101.35  Aligned_cols=115  Identities=17%  Similarity=0.088  Sum_probs=103.1

Q ss_pred             HHHHHHhhhhhhhcCC----------HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc--CHHH
Q 008780          398 AEKIRVTGNRLFKEGK----------FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRK  465 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~----------~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~--~~~~  465 (554)
                      ...+..++..+...++          +++|+..|.++++    .+|.+           ..+|++++.++.+++  +|++
T Consensus        63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~----~~pK~-----------y~aW~hR~w~l~~l~~~~~~~  127 (567)
T 1dce_A           63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR----VNPKS-----------YGTWHHRCWLLSRLPEPNWAR  127 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcccccHHH
Confidence            4566777888877777          9999999999999    89988           789999999999999  7899


Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780          466 SIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (554)
Q Consensus       466 A~~~~~~al~~~p~~~ka~~~~g~a~~~l~-~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~  528 (554)
                      |+.+|++++++||.|..||+.|+.++..++ .+++|++++.++++++|+| ..++.....+-..
T Consensus       128 el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n-~saW~~r~~ll~~  190 (567)
T 1dce_A          128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQ  190 (567)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC-ccHHHHHHHHHHh
Confidence            999999999999999999999999999999 9999999999999999999 5666666665544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.70  E-value=1.9e-07  Score=100.85  Aligned_cols=140  Identities=12%  Similarity=0.073  Sum_probs=111.6

Q ss_pred             hHHHHHHHHhhhhhhhcCCH-HHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC----------H
Q 008780          395 MDEAEKIRVTGNRLFKEGKF-ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE----------C  463 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~-~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~----------~  463 (554)
                      ++.-.........+.+.+.| ++|+..|.+++.    .+|.+           ..+|++++.++.++++          +
T Consensus        25 ~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~----~nP~~-----------~taW~~R~~~l~~l~~~~~~~~~~~~~   89 (567)
T 1dce_A           25 LKLYQSATQAVFQKRQAGELDESVLELTSQILG----ANPDF-----------ATLWNCRREVLQHLETEKSPEESAALV   89 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----HCchh-----------HHHHHHHHHHHHhcccccchhhhhhhH
Confidence            33333444444445556655 678999999999    89988           7899999999999998          9


Q ss_pred             HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 008780          464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALG--EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENS  540 (554)
Q Consensus       464 ~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~--~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~  540 (554)
                      ++|+.+++++++.+|++..+|+.|+-++..++  ++++|++.+.+++++||.| -.++.....+-.... ..+++-  +.
T Consensus        90 ~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-~~aW~~R~~~l~~l~~~~~~el--~~  166 (567)
T 1dce_A           90 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEEL--AF  166 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTCCCHHHHH--HH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-ccHHHHHHHHHHHcCCChHHHH--HH
Confidence            99999999999999999999999999999999  7799999999999999998 567766665555544 333443  66


Q ss_pred             HHhhcccccccc
Q 008780          541 LKGCLTRSLGKF  552 (554)
Q Consensus       541 y~~~f~~~~~~~  552 (554)
                      +.++....+..+
T Consensus       167 ~~~~I~~~p~n~  178 (567)
T 1dce_A          167 TDSLITRNFSNY  178 (567)
T ss_dssp             HHTTTTTTCCCH
T ss_pred             HHHHHHHCCCCc
Confidence            777777766544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.70  E-value=1.6e-07  Score=86.55  Aligned_cols=100  Identities=13%  Similarity=0.046  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV----------------KGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~----------------ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      ...+.++|.++++.++|.+|+..+.+++.+.|.++                .+++++|.++..+++|++|+.+|++++++
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            56789999999999999999999999999999887                89999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780          511 DKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       511 ~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      +|++ ..+...+..+.......+++.  ..|++.+...|
T Consensus       118 ~p~~-~~~~~~lg~~~~~~~~~~~A~--~~~~~al~~~p  153 (198)
T 2fbn_A          118 DKNN-VKALYKLGVANMYFGFLEEAK--ENLYKAASLNP  153 (198)
T ss_dssp             STTC-HHHHHHHHHHHHHHTCHHHHH--HHHHHHHHHST
T ss_pred             Cccc-HHHHHHHHHHHHHcccHHHHH--HHHHHHHHHCC
Confidence            9998 566666666665555334444  56776665544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.69  E-value=1e-07  Score=83.19  Aligned_cols=108  Identities=21%  Similarity=0.228  Sum_probs=91.0

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..++..|+|++|+..|++++........         ......++.++|.++..++++++|+.++++++.+
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3567788999999999999999999999996554321         1223678999999999999999999999999987


Q ss_pred             CC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          477 NP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       477 ~p------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                      .+      ....+++.+|.++..+|++++|+..+++++++...
T Consensus       119 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          119 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            42      23678999999999999999999999999987544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.69  E-value=1.6e-07  Score=98.50  Aligned_cols=102  Identities=15%  Similarity=0.157  Sum_probs=84.4

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc-----------------
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-----------------  460 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl-----------------  460 (554)
                      ...+...|..+...|++++|+..|++|++    ..|.+           ..++.++|.||...                 
T Consensus       247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~  311 (472)
T 4g1t_A          247 TDVLRSAAKFYRRKDEPDKAIELLKKALE----YIPNN-----------AYLHCQIGCCYRAKVFQVMNLRENGMYGKRK  311 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHHHHHHHHC------CHHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHH----hCCCh-----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            44567889999999999999999999999    78887           56777777777542                 


Q ss_pred             --cCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          461 --GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       461 --~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                        ..+++|+..+.++++++|.+..+++.+|.++..++++++|+..|++|++++|++
T Consensus       312 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~  367 (472)
T 4g1t_A          312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP  367 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred             HHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence              346788888888888888888888888888888888888888888888888765

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.68  E-value=8.8e-08  Score=93.96  Aligned_cols=100  Identities=13%  Similarity=0.103  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ...+.++|.++++.|+|++|+..+++++.++|+++.+++++|.++..+|++++|+.+|++|++++|++ ..+...+..+.
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~   82 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999998 56666666666


Q ss_pred             HHHHHHHHHHHHHHHHhhccccc
Q 008780          527 KQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       527 ~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      ......+++.  ..|++.+...|
T Consensus        83 ~~~g~~~~A~--~~~~~al~l~p  103 (281)
T 2c2l_A           83 LEMESYDEAI--ANLQRAYSLAK  103 (281)
T ss_dssp             HHTTCHHHHH--HHHHHHHHHHH
T ss_pred             HHcCCHHHHH--HHHHHHHHhCc
Confidence            5555333443  56666655444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.64  E-value=1.5e-07  Score=95.86  Aligned_cols=108  Identities=19%  Similarity=0.178  Sum_probs=92.0

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..++..|+|++|+..|++++........         ......++.++|.+|..+|++++|+.++++++.+
T Consensus       186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  256 (406)
T 3sf4_A          186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL  256 (406)
T ss_dssp             HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            4556788999999999999999999999996544211         1123568999999999999999999999999998


Q ss_pred             CCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       477 ~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                      .+..      ..+++.+|.++..+|++++|+..|++++++.+.
T Consensus       257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  299 (406)
T 3sf4_A          257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  299 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence            7765      789999999999999999999999999998543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.64  E-value=3.1e-07  Score=90.98  Aligned_cols=120  Identities=12%  Similarity=-0.018  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhhCCCChHHHHHHHHHH-
Q 008780          415 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRKSIEACNKVLDANPAHVKGLYRRGMAY-  491 (554)
Q Consensus       415 ~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~--~~~~A~~~~~~al~~~p~~~ka~~~~g~a~-  491 (554)
                      ++|+..+.++|.    ++|.+           ..++++++.++..++  ++++++.+++++|..+|.+..+|+.|+.++ 
T Consensus        50 ~~aL~~t~~~L~----~nP~~-----------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~  114 (306)
T 3dra_A           50 ERALHITELGIN----ELASH-----------YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIG  114 (306)
T ss_dssp             HHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HCcHH-----------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHH
Confidence            567777777777    67776           667777777777777  777777777777777777777777777777 


Q ss_pred             ---HHc---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcccccccc
Q 008780          492 ---MAL---GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKL--KVRLENSLKGCLTRSLGKF  552 (554)
Q Consensus       492 ---~~l---~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~--~~~~~~~y~~~f~~~~~~~  552 (554)
                         ..+   +++++++..+.++++++|.| -.++....-+-.......  .+-  ..+.+++...+..|
T Consensus       115 ~~~~~l~~~~~~~~EL~~~~~~l~~~pkn-y~aW~~R~~vl~~l~~~~~~~EL--~~~~~~i~~d~~N~  180 (306)
T 3dra_A          115 QIMELNNNDFDPYREFDILEAMLSSDPKN-HHVWSYRKWLVDTFDLHNDAKEL--SFVDKVIDTDLKNN  180 (306)
T ss_dssp             HHHHHTTTCCCTHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTCHHHH--HHHHHHHHHCTTCH
T ss_pred             HHHHhccccCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcccChHHHH--HHHHHHHHhCCCCH
Confidence               555   67777777777777777776 455544444443333111  222  45555555555443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.64  E-value=3.1e-07  Score=90.97  Aligned_cols=111  Identities=8%  Similarity=-0.100  Sum_probs=93.9

Q ss_pred             HHHHHHhhhhhhhcC--CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHH----HHc---cCHHHHHH
Q 008780          398 AEKIRVTGNRLFKEG--KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL----LKL---GECRKSIE  468 (554)
Q Consensus       398 a~~~~~~G~~~~~~g--~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~----~kl---~~~~~A~~  468 (554)
                      ...+..++..+...+  ++++|+..+.++|.    .+|.+           ..++++++.++    .++   +++.+++.
T Consensus        67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~----~nPk~-----------y~aW~~R~~iL~~~~~~l~~~~~~~~EL~  131 (306)
T 3dra_A           67 YTIWIYRFNILKNLPNRNLYDELDWCEEIAL----DNEKN-----------YQIWNYRQLIIGQIMELNNNDFDPYREFD  131 (306)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH----HCTTC-----------CHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHH----HCccc-----------HHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            556778888888888  99999999999999    88888           67888888888    666   78899999


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780          469 ACNKVLDANPAHVKGLYRRGMAYMALGEFE--EAQRDFEMMMKVDKSSEPDATAALSK  524 (554)
Q Consensus       469 ~~~~al~~~p~~~ka~~~~g~a~~~l~~~~--~A~~~~~~al~l~P~~~~~~~~~l~~  524 (554)
                      +|+++++.+|.|..+|+.|+.++..+++++  ++++.+.++++++|.| -.++.....
T Consensus       132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N-~sAW~~R~~  188 (306)
T 3dra_A          132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN-NSAWSHRFF  188 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC-HHHHHHHHH
Confidence            999999999999999999999999999888  9999999999999988 445544333

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.63  E-value=1.6e-07  Score=91.37  Aligned_cols=110  Identities=12%  Similarity=0.003  Sum_probs=86.1

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN--  477 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~--  477 (554)
                      ....+|..+++.++|.+|+..|++++.    ..  ++       .....+++++|.++..+|++.+|+.++++++.-.  
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~--d~-------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~  203 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGK----WP--DK-------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG  203 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGG----CS--CH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhc----cC--Cc-------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence            667788888888888888888876655    21  10       0124588999999999999999999999998654  


Q ss_pred             CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780          478 PA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (554)
Q Consensus       478 p~-~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~  524 (554)
                      |. .+.+++++|.++..+|+.++|+..|++++..+|+  ..+...|..
T Consensus       204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~~  249 (282)
T 4f3v_A          204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAALKD  249 (282)
T ss_dssp             TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHHC
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHhC
Confidence            55 6678999999999999999999999999999997  556666543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.61  E-value=1.7e-06  Score=84.92  Aligned_cols=110  Identities=15%  Similarity=0.085  Sum_probs=81.9

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      .....+...+..++..++|++|+..|.++++    ..+...+.     ......++++|.++...++|++|+.++.+++.
T Consensus        73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  143 (293)
T 2qfc_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELK----KEEYHPEF-----QQFLQWQYYVAAYVLKKVDYEYCILELKKLLN  143 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TCCCCHHH-----HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc----cccCChhH-----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            4456677889999999999999999999998    54443221     11244566788888888888888888888887


Q ss_pred             hCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCC
Q 008780          476 ANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMM---KVDKSS  514 (554)
Q Consensus       476 ~~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al---~l~P~~  514 (554)
                      +.+..      ..+++.+|.+|..+|+|++|+..|++|+   +..|++
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~  191 (293)
T 2qfc_A          144 QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN  191 (293)
T ss_dssp             TCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc
Confidence            65433      5678888888888888888888888888   445554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.61  E-value=7.9e-07  Score=86.02  Aligned_cols=93  Identities=11%  Similarity=0.077  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHH
Q 008780          447 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKSSEPDA  518 (554)
Q Consensus       447 ~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~  518 (554)
                      ..+++++|.+|..    .+++++|+.+++++++.+  ++.+++++|.++..    .+++++|+..|++++++++   ..+
T Consensus       110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a  184 (273)
T 1ouv_A          110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD---SPG  184 (273)
T ss_dssp             HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHH
T ss_pred             ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHH
Confidence            4567777777777    777777777777777765  56777777777777    7777777777777777642   345


Q ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHhhcc
Q 008780          519 TAALSKLKKQ----RQVKLKVRLENSLKGCLT  546 (554)
Q Consensus       519 ~~~l~~l~~~----~~~~~~~~~~~~y~~~f~  546 (554)
                      ...+..+...    ....+++.  ..|++...
T Consensus       185 ~~~lg~~~~~g~~~~~~~~~A~--~~~~~a~~  214 (273)
T 1ouv_A          185 CFNAGNMYHHGEGATKNFKEAL--ARYSKACE  214 (273)
T ss_dssp             HHHHHHHHHHTCSSCCCHHHHH--HHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCccHHHHH--HHHHHHHh
Confidence            5555555555    33233333  45555443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.60  E-value=1.8e-07  Score=92.06  Aligned_cols=140  Identities=16%  Similarity=0.105  Sum_probs=105.6

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..++..|++++|+..|+++++.......         ......++.++|.++..+|++++|+.++++++.+
T Consensus       182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  252 (338)
T 3ro2_A          182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL  252 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3556788899999999999999999999985443211         1223568999999999999999999999999998


Q ss_pred             CCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008780          477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS--E---PDATAALSKLKKQRQVKLKVRLENSLKGCL  545 (554)
Q Consensus       477 ~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~--~---~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f  545 (554)
                      .+..      ..+++.+|.++..+|++++|+..|++++.+.+..  .   ..+...+..+.......+++.  ..|++.+
T Consensus       253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~--~~~~~a~  330 (338)
T 3ro2_A          253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM--HFAEKHL  330 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH--HHHHHHH
T ss_pred             HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH--HHHHHHH
Confidence            7665      7899999999999999999999999999985532  1   123334444444444333443  5666655


Q ss_pred             cc
Q 008780          546 TR  547 (554)
Q Consensus       546 ~~  547 (554)
                      ..
T Consensus       331 ~~  332 (338)
T 3ro2_A          331 EI  332 (338)
T ss_dssp             HC
T ss_pred             HH
Confidence            43

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.60  E-value=1.7e-07  Score=78.43  Aligned_cols=79  Identities=19%  Similarity=0.184  Sum_probs=71.1

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      ...+..+...|..++..|+|++|+..|+++++    +.|.+           ..+++++|.|+.++|++++|+..+++++
T Consensus        24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al   88 (117)
T 3k9i_A           24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVK----QFPNH-----------QALRVFYAMVLYNLGRYEQGVELLLKII   88 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34577889999999999999999999999999    88887           6799999999999999999999999999


Q ss_pred             hhCCCChHHHHHHH
Q 008780          475 DANPAHVKGLYRRG  488 (554)
Q Consensus       475 ~~~p~~~ka~~~~g  488 (554)
                      ..+|+++.......
T Consensus        89 ~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           89 AETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHCCCHHHHHTHH
T ss_pred             HhCCCcHHHHHHHH
Confidence            99999987654433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.59  E-value=2.4e-07  Score=77.87  Aligned_cols=101  Identities=11%  Similarity=0.171  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE------PDATA  520 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~------~~~~~  520 (554)
                      ...++++|.++...++|++|+..+.+++..+|.++.+++.+|.++..++++++|+..|++++.++|++.      ..+..
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999999987541      23444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780          521 ALSKLKKQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       521 ~l~~l~~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      .+..+.......+++.  ..|++.+...+
T Consensus        84 ~la~~~~~~~~~~~A~--~~~~~~~~~~~  110 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAI--HFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHHHTTCHHHHH--HHHHHHHHHCC
T ss_pred             HHHHHHHHhccHHHHH--HHHHHHHHhCC
Confidence            4444444443333333  56666655433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.58  E-value=1.4e-07  Score=91.61  Aligned_cols=134  Identities=11%  Similarity=-0.024  Sum_probs=104.4

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  478 (554)
                      ......+..+...|+|++|...|..++.    ..|.+           . .++++|.++++.++|.+|+.+++.++...+
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~----~~p~~-----------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d  166 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPV----AGSEH-----------L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD  166 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCC----TTCHH-----------H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCch-----------H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence            3455678888899999999999988766    55543           4 889999999999999999999998887642


Q ss_pred             CC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          479 AH--VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD--KSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       479 ~~--~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~--P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      ..  ..+++.+|.++..+|++++|+..|++++...  |.-..++...+..+-+.+...++++  ..|+++....|+
T Consensus       167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~--~~l~~a~a~~P~  240 (282)
T 4f3v_A          167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV--ALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH--HHHHHHHHHSCC
T ss_pred             cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH--HHHHHHHhcCCc
Confidence            21  4589999999999999999999999999654  5433455555556655555566666  788888877664

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.58  E-value=4.2e-07  Score=73.07  Aligned_cols=68  Identities=13%  Similarity=0.087  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHccC---HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          447 NLLHLNVAACLLKLGE---CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~---~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ..++..+|.+++..++   ..+|...++++|++||+++.+++.+|.+++..|+|++|+..|+++++.+|.+
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            6788899999876665   7999999999999999999999999999999999999999999999999984

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.57  E-value=2.6e-07  Score=94.49  Aligned_cols=92  Identities=11%  Similarity=0.063  Sum_probs=85.3

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+.++|..+++.++|++|+..|++|++    ++|.+           ..+++++|.||..+++|++|+.++++|+++
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE----IDPSN-----------TKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHH----hCchh-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            356678899999999999999999999999    88877           789999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHH
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRD  503 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~  503 (554)
                      +|++..++..++.++..++++++|.+.
T Consensus       337 ~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          337 APEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888754

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.57  E-value=2e-06  Score=85.88  Aligned_cols=100  Identities=19%  Similarity=0.113  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC--HHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 008780          414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE--CRKSIEACNKVLDANPAHVKGLYRRGMAY  491 (554)
Q Consensus       414 ~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~--~~~A~~~~~~al~~~p~~~ka~~~~g~a~  491 (554)
                      +.+++..+.+++.    .+|.+           ..++++++.++.++++  |.+++.+|+++++.+|.|..||.+++.++
T Consensus        90 l~~EL~~~~~~L~----~~PKn-----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl  154 (331)
T 3dss_A           90 VKAELGFLESCLR----VNPKS-----------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA  154 (331)
T ss_dssp             HHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            7889999999998    88988           7899999999999994  99999999999999999999999999999


Q ss_pred             HHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780          492 MALGE-FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (554)
Q Consensus       492 ~~l~~-~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~  529 (554)
                      ..++. ++++++++.++++.+|.| ..++.....+-...
T Consensus       155 ~~l~~~~~eel~~~~~~I~~~p~N-~SAW~~R~~ll~~l  192 (331)
T 3dss_A          155 AQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHH
T ss_pred             HHhCcCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHh
Confidence            99999 699999999999999999 45666555554443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.56  E-value=1.8e-07  Score=82.51  Aligned_cols=89  Identities=15%  Similarity=0.177  Sum_probs=74.3

Q ss_pred             HccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780          459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF----------EEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (554)
Q Consensus       459 kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~----------~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~  528 (554)
                      ++++|++|+..++++++++|+++.+|+++|.++..++++          ++|+..|++|++++|++ ..+...+..+...
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-~~A~~~LG~ay~~   92 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHH
Confidence            677899999999999999999999999999999999876          59999999999999998 6677777766655


Q ss_pred             HH-----------HHHHHHHHHHHHhhcccccc
Q 008780          529 RQ-----------VKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       529 ~~-----------~~~~~~~~~~y~~~f~~~~~  550 (554)
                      +.           ..+++.  +.|++.+...|+
T Consensus        93 lg~l~P~~~~a~g~~~eA~--~~~~kAl~l~P~  123 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLAT--QFFQQAVDEQPD  123 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHH--HHHHHHHHHCTT
T ss_pred             hcccCcchhhhhccHHHHH--HHHHHHHHhCCC
Confidence            42           344444  788888776664

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.55  E-value=1e-06  Score=88.38  Aligned_cols=125  Identities=15%  Similarity=-0.018  Sum_probs=103.9

Q ss_pred             hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008780          410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDANPAHVKGLYRRG  488 (554)
Q Consensus       410 ~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~~p~~~ka~~~~g  488 (554)
                      +.....+|+..+.++|.    ++|.+           ..+++.++.++..++ .+++++.+++++|..+|.+..+|+.|+
T Consensus        66 ~~e~se~AL~lt~~~L~----~nP~~-----------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~  130 (349)
T 3q7a_A           66 KEEKSERALELTEIIVR----MNPAH-----------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRL  130 (349)
T ss_dssp             TTCCSHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHH----hCchh-----------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            34556789999999999    89998           789999999999999 599999999999999999999999999


Q ss_pred             HHHHHc-C-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhcccccccc
Q 008780          489 MAYMAL-G-EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKL--------KVRLENSLKGCLTRSLGKF  552 (554)
Q Consensus       489 ~a~~~l-~-~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~--------~~~~~~~y~~~f~~~~~~~  552 (554)
                      .++..+ + +++++++.+.++++++|.| -.++.-..-+-.......        ++-  ..+.+++...+..|
T Consensus       131 wlL~~l~~~~~~~EL~~~~k~L~~dpkN-y~AW~~R~wvl~~l~~~~~~~~~~~~eEL--e~~~k~I~~dp~N~  201 (349)
T 3q7a_A          131 LLLDRISPQDPVSEIEYIHGSLLPDPKN-YHTWAYLHWLYSHFSTLGRISEAQWGSEL--DWCNEMLRVDGRNN  201 (349)
T ss_dssp             HHHHHHCCSCCHHHHHHHHHHTSSCTTC-HHHHHHHHHHHHHHHHTTCCCHHHHHHHH--HHHHHHHHHCTTCH
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhccccccchhhHHHHH--HHHHHHHHhCCCCH
Confidence            999998 8 9999999999999999998 566666555544443222        333  66777777766654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.55  E-value=3.3e-07  Score=94.07  Aligned_cols=106  Identities=19%  Similarity=0.242  Sum_probs=89.5

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+...|..++..|+|++|+..|+++++......  +       ......++.++|.+|..+|++++|+.++++++.+.
T Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  293 (411)
T 4a1s_A          223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--D-------RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA  293 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--C-------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--C-------cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            44677889999999999999999999999544321  1       11235689999999999999999999999999987


Q ss_pred             CCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780          478 PAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (554)
Q Consensus       478 p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P  512 (554)
                      +..      ..+++.+|.++..+|++++|+..|++++.+.+
T Consensus       294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  334 (411)
T 4a1s_A          294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ  334 (411)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            754      78999999999999999999999999999854

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.54  E-value=1.4e-06  Score=87.04  Aligned_cols=112  Identities=7%  Similarity=-0.088  Sum_probs=97.5

Q ss_pred             HHHHHHhhhhhhhcC--CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC-HHHHHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEG--KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEACNKVL  474 (554)
Q Consensus       398 a~~~~~~G~~~~~~g--~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~-~~~A~~~~~~al  474 (554)
                      ...+..++..+.+.+  .|.+++.++.++++    .+|.+           ..++++++.+...++. +++++.++.+++
T Consensus       108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~----~dprN-----------y~AW~~R~~vl~~l~~~~~eel~~~~~~I  172 (331)
T 3dss_A          108 YGTWHHRCWLLSRLPEPNWARELELCARFLE----ADERN-----------FHCWDYRRFVAAQAAVAPAEELAFTDSLI  172 (331)
T ss_dssp             HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcccHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence            344556676666666  59999999999999    89988           7899999999999999 799999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          475 DANPAHVKGLYRRGMAYMAL--------------GEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       475 ~~~p~~~ka~~~~g~a~~~l--------------~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      +.+|.|..||.+++.++..+              +.++++++++.+++.++|+| ..++.-+.-+
T Consensus       173 ~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d-~SaW~Y~r~l  236 (331)
T 3dss_A          173 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND-QSAWFYHRWL  236 (331)
T ss_dssp             HHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence            99999999999999999998              56999999999999999999 5677644433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.53  E-value=3.8e-07  Score=85.25  Aligned_cols=129  Identities=11%  Similarity=0.079  Sum_probs=79.8

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhh--------c--cCC---CChhHHH-----HHhhhHHHHHHHHHHHHH
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN--------H--VNP---QDDEEGK-----VFVGKRNLLHLNVAACLL  458 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~--------~--~~p---~~~ee~~-----~~~~~~~~~~~nla~~~~  458 (554)
                      .+..+...|..++..+++++|+..|++|++.-.        .  ...   .+.++..     ....-...+++++|.+|.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~   96 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLV   96 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            356677888888888888888888888876200        0  000   0111110     111122456677777777


Q ss_pred             H----ccCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          459 K----LGECRKSIEACNKVLDANP--AHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       459 k----l~~~~~A~~~~~~al~~~p--~~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      .    .+++.+|+.+++++++..+  .++.+++++|.+|..    .+++++|+.+|++|+++ |.+ ..+...|..+..
T Consensus        97 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~-~~a~~~Lg~~y~  173 (212)
T 3rjv_A           97 NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT-GYAEYWAGMMFQ  173 (212)
T ss_dssp             CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT-THHHHHHHHHHH
T ss_pred             cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC-HHHHHHHHHHHH
Confidence            6    6677777777777777766  347777777777777    67777777777777777 444 334444444443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.50  E-value=1.1e-06  Score=82.03  Aligned_cols=76  Identities=8%  Similarity=-0.037  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCCCChH
Q 008780          447 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL-G-----EFEEAQRDFEMMMKVDKSSEP  516 (554)
Q Consensus       447 ~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l-~-----~~~~A~~~~~~al~l~P~~~~  516 (554)
                      ..++++||.+|..    .+++.+|+.+++++++. +.++.+++++|.+|... +     ++++|+.+|++|.+...   .
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~---~  200 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF---D  200 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC---H
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC---H
Confidence            6899999999999    89999999999999999 77889999999999885 3     89999999999999864   4


Q ss_pred             HHHHHHHHHH
Q 008780          517 DATAALSKLK  526 (554)
Q Consensus       517 ~~~~~l~~l~  526 (554)
                      .+...|..+.
T Consensus       201 ~A~~~l~~l~  210 (212)
T 3rjv_A          201 TGCEEFDRIS  210 (212)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            5676676664

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.49  E-value=3e-07  Score=82.99  Aligned_cols=108  Identities=15%  Similarity=0.077  Sum_probs=84.3

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhH------------------HHHH------hhhHHHHHHH
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE------------------GKVF------VGKRNLLHLN  452 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee------------------~~~~------~~~~~~~~~n  452 (554)
                      .+..+...|..++..|++++|+..|++++.    ..| +..-                  ...+      ......++++
T Consensus        39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~----~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~  113 (176)
T 2r5s_A           39 RGDVKLAKADCLLETKQFELAQELLATIPL----EYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACE  113 (176)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHTTCCG----GGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHhhh----ccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHH
Confidence            355667778888888888888887777655    333 2110                  0000      0112568999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780          453 VAACLLKLGECRKSIEACNKVLDANPAH--VKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (554)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~al~~~p~~--~ka~~~~g~a~~~l~~~~~A~~~~~~al~  509 (554)
                      +|.++..+|++++|+..+.++++.+|++  ..+++.+|.++..+|++++|+..|++++.
T Consensus       114 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          114 LAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            9999999999999999999999999976  66999999999999999999999999885

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.48  E-value=9.2e-07  Score=80.87  Aligned_cols=109  Identities=15%  Similarity=0.102  Sum_probs=90.2

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      ...+..+...|..+...|++++|+..|++++...... +.+.       .....+++++|.++..+|++++|+.++.+++
T Consensus        63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-PEDP-------LAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CccH-------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3456778899999999999999999999999966533 2221       1236789999999999999999999999999


Q ss_pred             hhCC--CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          475 DANP--AH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       475 ~~~p--~~----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      .+.+  .+    ..++..+|.++..+|++++|+..|++++++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            7632  22    4467899999999999999999999999874

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.48  E-value=1.4e-06  Score=71.44  Aligned_cols=83  Identities=16%  Similarity=0.185  Sum_probs=67.9

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +....+.|..+|+.++|..|+.-|++|++....-....        .....++.++|.|+.++|+++.|+.++++++.++
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~--------~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCc--------ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            45567899999999999999999999999653211100        1136788999999999999999999999999999


Q ss_pred             CCChHHHHHHH
Q 008780          478 PAHVKGLYRRG  488 (554)
Q Consensus       478 p~~~ka~~~~g  488 (554)
                      |++..++.+++
T Consensus        77 P~~~~~~~n~~   87 (104)
T 2v5f_A           77 PEHQRANGNLK   87 (104)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCHHHHhhHH
Confidence            99999888776

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.45  E-value=6.2e-07  Score=72.91  Aligned_cols=67  Identities=10%  Similarity=0.108  Sum_probs=62.0

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+...|..++..|+|++|+..|+++++    ++|.+           ..+++++|.||.++|++++|+..+++++++.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVE----TDPDY-----------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            56788999999999999999999999999    88887           6799999999999999999999999999987


Q ss_pred             CC
Q 008780          478 PA  479 (554)
Q Consensus       478 p~  479 (554)
                      |.
T Consensus        72 ~~   73 (100)
T 3ma5_A           72 RE   73 (100)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.44  E-value=1.9e-06  Score=70.68  Aligned_cols=80  Identities=11%  Similarity=0.039  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDAN-------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT  519 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~  519 (554)
                      ..-++.+|..+++.++|..|+.++++|+...       +..+..+.++|.++..+|+++.|+..+++|++++|++ ..+.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~   83 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH-QRAN   83 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHH
Confidence            4557899999999999999999999999863       3467889999999999999999999999999999998 4444


Q ss_pred             HHHHHHHH
Q 008780          520 AALSKLKK  527 (554)
Q Consensus       520 ~~l~~l~~  527 (554)
                      ..+..++.
T Consensus        84 ~n~~~~~~   91 (104)
T 2v5f_A           84 GNLKYFEY   91 (104)
T ss_dssp             HHHHHHHH
T ss_pred             hhHHHHHH
Confidence            44443333

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.43  E-value=2.7e-06  Score=71.51  Aligned_cols=102  Identities=12%  Similarity=0.146  Sum_probs=81.7

Q ss_pred             CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHH---HHHHHHHHHhhC-C-CChHHHHH
Q 008780          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK---SIEACNKVLDAN-P-AHVKGLYR  486 (554)
Q Consensus       412 g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~---A~~~~~~al~~~-p-~~~ka~~~  486 (554)
                      .....+...|.+++.    ..+.+           ..+.+|+|.|+.+..+..+   ++..+...+..+ | ....++|.
T Consensus        15 ~~l~~~~~~y~~e~~----~~~~s-----------~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~   79 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKA----AGSVS-----------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY   79 (126)
T ss_dssp             HHHHHHHHHHHHHHH----HSCCC-----------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc----cCCCc-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            344566777777766    44444           5788999999999887666   999999999887 5 67889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780          487 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (554)
Q Consensus       487 ~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~  529 (554)
                      +|.+++.+|+|++|+..++.+|+.+|+| ..+..+...++.+.
T Consensus        80 LAvg~yklg~Y~~A~~~~~~lL~~eP~n-~QA~~Lk~~i~~~i  121 (126)
T 1nzn_A           80 LAVGNYRLKEYEKALKYVRGLLQTEPQN-NQAKELERLIDKAM  121 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 55555555554443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.43  E-value=1.8e-06  Score=92.40  Aligned_cols=103  Identities=12%  Similarity=0.063  Sum_probs=56.1

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      ...+...|..+.+.|++++|...|++++.    +.|.+..          .+|.+++.++.+++++++|+..+.+|++..
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~  386 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLA----IEDIDPT----------LVYIQYMKFARRAEGIKSGRMIFKKAREDA  386 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SSSSCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhC----ccccCch----------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            44566777888888999999999999998    7776521          234444444444444444444444444444


Q ss_pred             CCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          478 PAHVKGLYRRGMA-YMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       478 p~~~ka~~~~g~a-~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      |.+...+...+.. +...|++++|+..|+++++.+|++
T Consensus       387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~  424 (530)
T 2ooe_A          387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI  424 (530)
T ss_dssp             TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred             CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC
Confidence            4433333333322 122444444444444444444443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.41  E-value=1.3e-06  Score=87.71  Aligned_cols=112  Identities=13%  Similarity=-0.027  Sum_probs=99.0

Q ss_pred             HHHHHHhhhhhhhcC-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc-c-CHHHHHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-G-ECRKSIEACNKVL  474 (554)
Q Consensus       398 a~~~~~~G~~~~~~g-~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl-~-~~~~A~~~~~~al  474 (554)
                      ...+..++..+...+ .+++|+..+.++|.    .+|.+           ..++++++.|+.++ + ++.+++.+|+++|
T Consensus        88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~----~nPKn-----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L  152 (349)
T 3q7a_A           88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAV----QNLKS-----------YQVWHHRLLLLDRISPQDPVSEIEYIHGSL  152 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----TTCCC-----------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            445677888888888 59999999999999    89988           78999999999998 7 8999999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          475 DANPAHVKGLYRRGMAYMALGEFE--------EAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       475 ~~~p~~~ka~~~~g~a~~~l~~~~--------~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      +.+|.|..||+.|+.++..++.++        ++++.+.++++++|.| ..++.-...+
T Consensus       153 ~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N-~SAW~~R~~l  210 (349)
T 3q7a_A          153 LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN-NSAWGWRWYL  210 (349)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence            999999999999999999999888        9999999999999998 4455544444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.34  E-value=6.4e-06  Score=88.06  Aligned_cols=118  Identities=9%  Similarity=0.066  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHh-hCCC
Q 008780          415 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-------LGECR-------KSIEACNKVLD-ANPA  479 (554)
Q Consensus       415 ~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k-------l~~~~-------~A~~~~~~al~-~~p~  479 (554)
                      .+|+..|++|+.    ..|.+           ..+|+++|..+.+       +|+++       +|+..+++|++ ++|+
T Consensus       255 ~~a~~~y~~al~----~~p~~-----------~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~  319 (530)
T 2ooe_A          255 KRVMFAYEQCLL----VLGHH-----------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK  319 (530)
T ss_dssp             HHHHHHHHHHHH----HHTTC-----------HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred             HHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence            478889999999    67777           6789999998886       78877       99999999997 8999


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      +..+|+.+|..+..+|++++|+..|+++++++|.+...++..+..+..+....++++  ..|++.....+
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~--~~~~~Al~~~~  387 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR--MIFKKAREDAR  387 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTCTT
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHH--HHHHHHHhccC
Confidence            999999999999999999999999999999999873345666655555444344455  67777766544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.31  E-value=9.6e-06  Score=70.16  Aligned_cols=89  Identities=11%  Similarity=-0.009  Sum_probs=79.8

Q ss_pred             hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCC
Q 008780          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~  479 (554)
                      .|..++..+.+.+|+..|++|.+    .  .+           ..+++|+|.+|..    .+++.+|+.+++++.+.  .
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~----~--g~-----------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g   91 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACE----L--NS-----------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N   91 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHH----T--TC-----------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHc----C--CC-----------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence            67777888888999999999998    3  23           6789999999999    89999999999999887  6


Q ss_pred             ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 008780          480 HVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       480 ~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l~  511 (554)
                      ++.+++++|.+|..    .+++++|+.+|++|.++.
T Consensus        92 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            89999999999999    999999999999999985

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.31  E-value=7.6e-06  Score=82.85  Aligned_cols=108  Identities=16%  Similarity=0.075  Sum_probs=88.0

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..++..|++++|...|++++.......  +       ......+++++|.++..+|+|.+|+.++++++.+
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD--V-------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC--c-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            455677889999999999999999999998543321  1       1122567889999999999999999999999987


Q ss_pred             C--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          477 N--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       477 ~--------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                      .        |....++..+|.++..+|++++|...+++++.+.+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            5        334667888999999999999999999999998775

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.28  E-value=2.5e-06  Score=90.17  Aligned_cols=109  Identities=11%  Similarity=0.084  Sum_probs=92.4

Q ss_pred             hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc-CCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008780          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (554)
Q Consensus       394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~-~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  472 (554)
                      ....+..+.+.|..+..+|+|++|+.+|+++|...... .+.++        .....++|||..|..+|+|++|+..+.+
T Consensus       347 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp--------~~a~~l~nLa~~~~~~G~~~eA~~~~~~  418 (490)
T 3n71_A          347 NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA--------QLGMAVMRAGLTNWHAGHIEVGHGMICK  418 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH--------HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            35578888999999999999999999999999976553 44443        2367899999999999999999999999


Q ss_pred             HHhh-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          473 VLDA-----NPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       473 al~~-----~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      ||++     -|++   .+.+-.+++++..++.|.+|...|+++.+-
T Consensus       419 Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          419 AYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9976     3444   566778999999999999999999998764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.26  E-value=3.8e-06  Score=69.62  Aligned_cols=80  Identities=15%  Similarity=0.152  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008780          465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGC  544 (554)
Q Consensus       465 ~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~  544 (554)
                      +|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+++.  ..|++.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~--~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY-SVAWKWLGKTLQGQGDRAGAR--QAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHH--HHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHcCCHHHHH--HHHHHH
Confidence            57889999999999999999999999999999999999999999999998 667777776666555333443  556655


Q ss_pred             ccc
Q 008780          545 LTR  547 (554)
Q Consensus       545 f~~  547 (554)
                      +..
T Consensus        80 l~~   82 (115)
T 2kat_A           80 LAA   82 (115)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.17  E-value=2e-05  Score=83.30  Aligned_cols=78  Identities=14%  Similarity=0.140  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---Ch
Q 008780          447 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKS---SE  515 (554)
Q Consensus       447 ~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l~P~---~~  515 (554)
                      ..+++++|.+|..    .+++++|+.+++++++.  .++.+++++|.+|..    .+++++|+.+|++|++.+|+   + 
T Consensus       363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~-  439 (490)
T 2xm6_A          363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT-  439 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH-
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC-
Confidence            5689999999999    89999999999999986  479999999999999    89999999999999999954   4 


Q ss_pred             HHHHHHHHHHHH
Q 008780          516 PDATAALSKLKK  527 (554)
Q Consensus       516 ~~~~~~l~~l~~  527 (554)
                      ..+...|..+..
T Consensus       440 ~~a~~~l~~~~~  451 (490)
T 2xm6_A          440 ENRNITEKKLTA  451 (490)
T ss_dssp             HHHHHHHTTSCH
T ss_pred             HHHHHHHHhcCH
Confidence            445555555433

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.11  E-value=2.2e-05  Score=79.40  Aligned_cols=107  Identities=16%  Similarity=0.073  Sum_probs=89.3

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      .-.+..+...|..++..|++++|+..+++++.    ..|.++.      .....+++++|.++...|++++|+..+.+++
T Consensus        11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   80 (373)
T 1hz4_A           11 TMHAEFNALRAQVAINDGNPDEAERLAKLALE----ELPPGWF------YSRIVATSVLGEVLHCKGELTRSLALMQQTE   80 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TCCTTCH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCCch------hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            33466777889999999999999999999999    4444321      1235688999999999999999999999999


Q ss_pred             hhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          475 DANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       475 ~~~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      .+.+..      ..+++.+|.++...|++++|+..|++++.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  123 (373)
T 1hz4_A           81 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  123 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            876533      3457899999999999999999999999985

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.05  E-value=5e-05  Score=63.89  Aligned_cols=83  Identities=18%  Similarity=0.233  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHccC---HHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGE---CRKSIEACNKVLDANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  522 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~---~~~A~~~~~~al~~~p-~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l  522 (554)
                      ....+|.|.|+.+..+   ..+++..+...+..+| ....++|.+|.+++.+|+|++|+++.+.+|+++|+| ..+..+.
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N-~QA~~Lk  118 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN-KQVGALK  118 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC-HHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC-HHHHHHH
Confidence            5678999999998875   5679999999999888 458899999999999999999999999999999999 5566555


Q ss_pred             HHHHHHHH
Q 008780          523 SKLKKQRQ  530 (554)
Q Consensus       523 ~~l~~~~~  530 (554)
                      ..++.+..
T Consensus       119 ~~Ie~ki~  126 (134)
T 3o48_A          119 SMVEDKIQ  126 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.01  E-value=6.6e-05  Score=75.24  Aligned_cols=111  Identities=13%  Similarity=0.103  Sum_probs=79.6

Q ss_pred             HHHHHhhhhhhh---cCCHHHHHHHHHHHHHHhhccCCCChhHHH---------------------HH------------
Q 008780          399 EKIRVTGNRLFK---EGKFELAKAKYEKVLRDFNHVNPQDDEEGK---------------------VF------------  442 (554)
Q Consensus       399 ~~~~~~G~~~~~---~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~---------------------~~------------  442 (554)
                      -.+.-+|..++.   ...+.+|+.+|++|++    ++|....-..                     .+            
T Consensus       197 ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~----lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~  272 (372)
T 3ly7_A          197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQ----SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE  272 (372)
T ss_dssp             HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence            344455555554   3456899999999999    7777532110                     00            


Q ss_pred             hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       443 ~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ......++.-+|..++..|++++|+..+++|+.++| +.-+|..+|.++...|++++|++.|.+|+.++|..
T Consensus       273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            011122444566667778999999999999999986 57788888999999999999999999999999975

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.98  E-value=5.1e-05  Score=87.34  Aligned_cols=123  Identities=20%  Similarity=0.236  Sum_probs=91.7

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP-  478 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p-  478 (554)
                      .+...|+.++..|+|++|+.+|.+|-                       -|..+|.|+.++|+|++|++.+++|...++ 
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA~-----------------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhh-----------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence            45678999999999999999998863                       367788888888888888888888854433 


Q ss_pred             ------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q 008780          479 ------------------------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLK  534 (554)
Q Consensus       479 ------------------------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~  534 (554)
                                              .++..+..++..|...|.|++|+..|+++|.++|.+ .....+|..+..+-+-++-
T Consensus      1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH-~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A         1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH-MGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH-hHHHHHHHHHHHhCCHHHH
Confidence                                    245566678888999999999999999999999887 5677677777666552222


Q ss_pred             HHHHHHHHhhcc
Q 008780          535 VRLENSLKGCLT  546 (554)
Q Consensus       535 ~~~~~~y~~~f~  546 (554)
                      ....+.|.+..+
T Consensus      1333 mEhlk~f~~rin 1344 (1630)
T 1xi4_A         1333 REHLELFWSRVN 1344 (1630)
T ss_pred             HHHHHHHHHhcc
Confidence            222345554433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.94  E-value=7.5e-05  Score=64.43  Aligned_cols=94  Identities=13%  Similarity=0.036  Sum_probs=79.3

Q ss_pred             cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (554)
Q Consensus       411 ~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  490 (554)
                      .+++.+|+..|++|.+    .....             +.  +|.+|.....+++|+.+++++.+.  .++.+++++|.+
T Consensus         8 ~~d~~~A~~~~~~aa~----~g~~~-------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~   66 (138)
T 1klx_A            8 KKDLKKAIQYYVKACE----LNEMF-------------GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDF   66 (138)
T ss_dssp             HHHHHHHHHHHHHHHH----TTCTT-------------HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHc----CCCHh-------------hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence            3578999999999998    44322             22  999999999999999999999987  689999999999


Q ss_pred             HHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780          491 YMA----LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (554)
Q Consensus       491 ~~~----l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~  528 (554)
                      |..    .+++++|+.+|++|.+..  + ..+...|..+...
T Consensus        67 y~~G~g~~~d~~~A~~~~~~Aa~~g--~-~~a~~~Lg~~y~~  105 (138)
T 1klx_A           67 YENGKYVKKDLRKAAQYYSKACGLN--D-QDGCLILGYKQYA  105 (138)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHH
T ss_pred             HHcCCCCCccHHHHHHHHHHHHcCC--C-HHHHHHHHHHHHC
Confidence            999    899999999999999873  4 5566677777665

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.93  E-value=0.00012  Score=62.47  Aligned_cols=81  Identities=17%  Similarity=0.237  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHccC---HHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGE---CRKSIEACNKVLDANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  522 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~---~~~A~~~~~~al~~~p-~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l  522 (554)
                      ....+|.|.|+.+..+   -.+++..++..+..+| ....++|.+|.+++.+++|++|+++.+.+|+.+|+| ..+..+.
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n-~QA~~Lk  117 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN-KQVGALK  117 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC-HHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-HHHHHHH
Confidence            5688999999999876   5579999999999888 467899999999999999999999999999999999 4555444


Q ss_pred             HHHHHH
Q 008780          523 SKLKKQ  528 (554)
Q Consensus       523 ~~l~~~  528 (554)
                      ..++.+
T Consensus       118 ~~Ie~~  123 (144)
T 1y8m_A          118 SMVEDK  123 (144)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.93  E-value=0.00017  Score=76.14  Aligned_cols=94  Identities=11%  Similarity=0.064  Sum_probs=54.3

Q ss_pred             HHHHHHhhhhhhh----cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH----ccCHHHHHHH
Q 008780          398 AEKIRVTGNRLFK----EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEA  469 (554)
Q Consensus       398 a~~~~~~G~~~~~----~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~  469 (554)
                      +..+...|..++.    .+++.+|+..|++|++    .  .+           ..+++++|.+|..    .+++++|+.+
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~----~--~~-----------~~a~~~Lg~~y~~g~g~~~~~~~A~~~  101 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE----Q--GY-----------TPAEYVLGLRYMNGEGVPQDYAQAVIW  101 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----T--TC-----------HHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH----C--CC-----------HHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            4566677777777    7888888888888876    2  11           3345555555555    5555555555


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 008780          470 CNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       470 ~~~al~~~p~~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l  510 (554)
                      ++++.+.  .++.+++++|.+|..    .+++++|+..|++|.+.
T Consensus       102 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  144 (490)
T 2xm6_A          102 YKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ  144 (490)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            5555443  345555555555555    45555555555555443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.89  E-value=3.6e-05  Score=67.02  Aligned_cols=79  Identities=11%  Similarity=0.085  Sum_probs=65.1

Q ss_pred             HHHHHHhhhhhhhcC---CHHHHHHHHHHHHHHhhccC-CCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (554)
Q Consensus       398 a~~~~~~G~~~~~~g---~~~~A~~~Y~~al~~l~~~~-p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (554)
                      .+...+.|..+.+..   ++++|+..++..++    .+ |.          ....+++++|..|+++++|.+|+.+|+++
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~----~~~p~----------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l   97 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP----KGSKE----------EQRDYVFYLAVGNYRLKEYEKALKYVRGL   97 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH----HSCHH----------HHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh----cCCcc----------chHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            456678888888877   77799999999888    43 31          13579999999999999999999999999


Q ss_pred             HhhCCCChHHHHHHHHH
Q 008780          474 LDANPAHVKGLYRRGMA  490 (554)
Q Consensus       474 l~~~p~~~ka~~~~g~a  490 (554)
                      |+++|+|..|..-+-.+
T Consensus        98 L~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           98 LQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHCTTCHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHH
Confidence            99999999887765443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.85  E-value=5.5e-05  Score=72.86  Aligned_cols=88  Identities=11%  Similarity=0.052  Sum_probs=75.6

Q ss_pred             CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHhhCCCC-hHHHHH
Q 008780          413 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-----GECRKSIEACNKVLDANPAH-VKGLYR  486 (554)
Q Consensus       413 ~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl-----~~~~~A~~~~~~al~~~p~~-~ka~~~  486 (554)
                      ....|....++|++    ++|.-         ....+|.-+|..|.+.     |+.++|..++++||+++|+. ..+++.
T Consensus       178 ~l~~A~a~lerAle----LDP~~---------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~  244 (301)
T 3u64_A          178 TVHAAVMMLERACD----LWPSY---------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHIT  244 (301)
T ss_dssp             HHHHHHHHHHHHHH----HCTTH---------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHH
T ss_pred             hHHHHHHHHHHHHH----hCCCc---------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHH
Confidence            34666777777777    67652         1267999999999996     99999999999999999975 999999


Q ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHhCCC
Q 008780          487 RGMAYMAL-GEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       487 ~g~a~~~l-~~~~~A~~~~~~al~l~P~  513 (554)
                      .|..+... +++++|.+.+++|+..+|.
T Consensus       245 YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          245 YADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            99999885 9999999999999999876

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.84  E-value=0.00013  Score=76.44  Aligned_cols=93  Identities=12%  Similarity=-0.001  Sum_probs=60.7

Q ss_pred             HHHHhhhhhhhcC---CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc----cCHHHHHHHHHH
Q 008780          400 KIRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL----GECRKSIEACNK  472 (554)
Q Consensus       400 ~~~~~G~~~~~~g---~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl----~~~~~A~~~~~~  472 (554)
                      .+...|..+...|   ++.+|+..|++|++    ..+.+           ...++++|.+|...    +++++|+.++++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~----~g~~~-----------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~  242 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVS----RGTVT-----------AQRVDSVARVLGDATLGTPDEKTAQALLEK  242 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----TTCSC-----------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHH----CCCHH-----------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence            4567788888888   99999999999998    55554           34445666665444    456666666666


Q ss_pred             HHhhCCCChHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHh
Q 008780          473 VLDANPAHVKGLYRRGMA-Y--MALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       473 al~~~p~~~ka~~~~g~a-~--~~l~~~~~A~~~~~~al~l  510 (554)
                      +.   |.++.+++++|.+ +  ...+++++|+.+|++|.+.
T Consensus       243 aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~  280 (452)
T 3e4b_A          243 IA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA  280 (452)
T ss_dssp             HG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred             Hc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence            55   5566666666665 2  3455666666666665544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.78  E-value=0.00011  Score=75.77  Aligned_cols=116  Identities=12%  Similarity=0.145  Sum_probs=76.0

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC------------------CCChhHHHH-H------------hh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN------------------PQDDEEGKV-F------------VG  444 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~------------------p~~~ee~~~-~------------~~  444 (554)
                      .....+...|..++..|+|++|+..|.+++.....+.                  +.+.+.... +            ..
T Consensus        53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  132 (434)
T 4b4t_Q           53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF  132 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence            4456688999999999999999999999988654321                  111111100 0            01


Q ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDA------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       445 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      .+..++.++|.+|..+|+|.+|+..+.+++..      .+..+.++..+|.+|..+++|++|+..|++++.+.
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            13446667777777777777777777776654      23345567777777777777777777777777664

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=97.65  E-value=0.00011  Score=76.02  Aligned_cols=76  Identities=13%  Similarity=0.159  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (554)
Q Consensus        45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~  124 (554)
                      ++.||.|.++|+++ .||+.|+++.      +.++.+.+|+++  + |+.+|.||++|++..|.+..             
T Consensus       155 a~~gD~V~id~~~~-~dG~~~~~~~------~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF-------------  211 (433)
T 3gty_X          155 AEAGDLVRVNMEVY-NEEGKKLTSR------EYEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY-------------  211 (433)
T ss_dssp             CCTTSEEEEEEEEE-CTTSCEEEEE------EEEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE-------------
T ss_pred             cCCCCEEEEEEEEE-ECCEECcCCC------CCCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee-------------
Confidence            68999999999998 6999999765      358888999887  3 99999999999999998843             


Q ss_pred             CCCCCCCCceEEEEEEEeeecccc
Q 008780          125 PSTFPKDEELHFEIEMIDFAKAKI  148 (554)
Q Consensus       125 ~~~ip~~~~l~~~v~l~~~~~~~~  148 (554)
                           +|.+..|.|+|.+|.....
T Consensus       212 -----aGk~a~F~VtV~~Ik~~~l  230 (433)
T 3gty_X          212 -----EGKKYTYKLEVEEVYKRTL  230 (433)
T ss_dssp             -----TTEEEEEEEEEEEEEEECC
T ss_pred             -----CCCeEEEEEEEEEEEEecC
Confidence                 1679999999999986543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.64  E-value=0.00088  Score=58.68  Aligned_cols=119  Identities=15%  Similarity=0.150  Sum_probs=87.1

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN--  477 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~--  477 (554)
                      .+++....++..+.|+.|+..+..++...+. +++-     .--.....++..+|.+++..++|.+|+..|++||.+.  
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~-~~~~-----~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~   95 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNN-NPEL-----FSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA   95 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-STTS-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC-Cccc-----ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            3567788889999999999999998885432 2210     0012346788999999999999999999999998652  


Q ss_pred             -CCC----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          478 -PAH----------------------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       478 -p~~----------------------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                       +.+                      ....|+.+.||..++++++|+..++..-.-.- + ..+...|.+|.
T Consensus        96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R-t-~kvnm~LakLy  165 (167)
T 3ffl_A           96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR-T-PKINMLLANLY  165 (167)
T ss_dssp             C--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC-C-HHHHHHHHHHC
T ss_pred             HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc-C-HHHHHHHHHHh
Confidence             111                      25789999999999999999998875422222 2 45666666653

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.63  E-value=0.00039  Score=67.01  Aligned_cols=64  Identities=17%  Similarity=0.220  Sum_probs=54.4

Q ss_pred             CHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          462 ECRKSIEACNKVLDANPA--HVKGLYRRGMAYMAL-----GEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       462 ~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~l-----~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      ....|....++|+++||+  +..+|..+|..|..+     |+.++|..+|++||+++|+....++......
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~  248 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADA  248 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            478999999999999999  566999999999996     9999999999999999997534555555543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.62  E-value=0.00034  Score=55.82  Aligned_cols=70  Identities=16%  Similarity=0.179  Sum_probs=61.1

Q ss_pred             HHHHHHhhhhhhhcCC---HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGK---FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~---~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      +..+...|..++..++   ..+|...+++||.    ++|.+           ..+++.+|..+++.|+|.+|+.++++++
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~----~dp~~-----------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l   70 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ----LEPYN-----------EAALSLIANDHFISFRFQEAIDTWVLLL   70 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----HCcCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5566778888875544   7999999999999    89998           7899999999999999999999999999


Q ss_pred             hhCCCChH
Q 008780          475 DANPAHVK  482 (554)
Q Consensus       475 ~~~p~~~k  482 (554)
                      +.+|.++.
T Consensus        71 ~~~p~~~~   78 (93)
T 3bee_A           71 DSNDPNLD   78 (93)
T ss_dssp             TCCCTTCC
T ss_pred             hhCCCCcc
Confidence            99998433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.61  E-value=0.00032  Score=80.89  Aligned_cols=108  Identities=17%  Similarity=0.111  Sum_probs=82.4

Q ss_pred             HHhhhhhhhcCCHHHHHHHHHHHHHHhhc---c--CCCChhHHHH-H-hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNH---V--NPQDDEEGKV-F-VGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~---~--~p~~~ee~~~-~-~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      .+.|..+...|.|++|...|+++-.....   +  .-.+-+.... . +-....+|+++|.++..+|+|++|+.+|.+| 
T Consensus      1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A         1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence            45699999999999999999986432111   0  0000001000 0 1122568999999999999999999999886 


Q ss_pred             hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                          +++.+|++.|.++..+|+|++|++.|.+|.+.++..
T Consensus      1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A         1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred             ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc
Confidence                899999999999999999999999999999988653

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=97.61  E-value=0.00013  Score=75.38  Aligned_cols=73  Identities=11%  Similarity=0.095  Sum_probs=62.5

Q ss_pred             CCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcce
Q 008780          168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE  247 (554)
Q Consensus       168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~~  247 (554)
                      .++.||.|+++|+++ .||..|+++.. .++.+.+|.+.  | |+++|.||++||.++|.+.-             ++++
T Consensus       154 ~a~~gD~V~id~~~~-~dG~~~~~~~~-~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF-------------aGk~  215 (433)
T 3gty_X          154 PAEAGDLVRVNMEVY-NEEGKKLTSRE-YEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY-------------EGKK  215 (433)
T ss_dssp             CCCTTSEEEEEEEEE-CTTSCEEEEEE-EEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE-------------TTEE
T ss_pred             ccCCCCEEEEEEEEE-ECCEECcCCCC-CCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee-------------CCCe
Confidence            467899999999996 79999987543 78888999887  4 99999999999999999832             4689


Q ss_pred             EEEEEeeeeee
Q 008780          248 VHFEVELVHLI  258 (554)
Q Consensus       248 l~~~v~l~~~~  258 (554)
                      ..|.|.|.++.
T Consensus       216 a~F~VtV~~Ik  226 (433)
T 3gty_X          216 YTYKLEVEEVY  226 (433)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            99999999995

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.61  E-value=0.00025  Score=72.94  Aligned_cols=112  Identities=15%  Similarity=0.108  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (554)
Q Consensus       394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (554)
                      ....+..+...|..+++.|+|+.|+..|++|..                    ...|.+++.++...|+|+.|..+... 
T Consensus       144 ~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~--------------------~~~Wk~v~~aCv~~~ef~lA~~~~l~-  202 (449)
T 1b89_A          144 LYNNVSNFGRLASTLVHLGEYQAAVDGARKANS--------------------TRTWKEVCFACVDGKEFRLAQMCGLH-  202 (449)
T ss_dssp             HHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTC--------------------HHHHHHHHHHHHHTTCHHHHHHTTTT-
T ss_pred             HHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCC--------------------chhHHHHHHHHHHcCcHHHHHHHHHH-
Confidence            334444555666666666666666666666622                    45666667777777777777554443 


Q ss_pred             HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       474 l~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      |..   ++.-+..+...|...|++++|+..|+++|.+++.+ ..+..+|..+..+-+
T Consensus       203 L~~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah-~~~ftel~il~~ky~  255 (449)
T 1b89_A          203 IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAH-MGMFTELAILYSKFK  255 (449)
T ss_dssp             TTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC-HHHHHHHHHHHHTTC
T ss_pred             HHh---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH-HHHHHHHHHHHHhcC
Confidence            333   33445567788999999999999999999999988 677777877766655

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.60  E-value=0.00065  Score=70.96  Aligned_cols=91  Identities=11%  Similarity=0.016  Sum_probs=57.9

Q ss_pred             HHHHHhhhh-h--hhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc-----CHHHHHHHH
Q 008780          399 EKIRVTGNR-L--FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-----ECRKSIEAC  470 (554)
Q Consensus       399 ~~~~~~G~~-~--~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~-----~~~~A~~~~  470 (554)
                      ..+...|.. +  ...+++.+|+..|++|++    ..  +           ..+++|+|.+|. .|     ++.+|+.++
T Consensus       249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~----~g--~-----------~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~  310 (452)
T 3e4b_A          249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRA----AD--Q-----------PRAELLLGKLYY-EGKWVPADAKAAEAHF  310 (452)
T ss_dssp             HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH----TT--C-----------HHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----CC--C-----------HHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence            345566665 3  457788888888888876    22  2           456666666665 33     666666666


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 008780          471 NKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       471 ~~al~~~p~~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l  510 (554)
                      +++.   +.++.+++++|.+|..    ..++++|+.+|++|.+.
T Consensus       311 ~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  351 (452)
T 3e4b_A          311 EKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN  351 (452)
T ss_dssp             HTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred             HHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence            6666   6666666666666655    33666666666666654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.58  E-value=0.00045  Score=70.93  Aligned_cols=103  Identities=13%  Similarity=0.076  Sum_probs=82.4

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  479 (554)
                      .+...|..++..|+|.+|+..+++++..+...+..         .....++.+++.+|..+++|.+|...+++++.+.+.
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK---------PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence            34577888889999999999999988865543322         345678999999999999999999999999999766


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      ........+..+..+|.+..+...|..|...-
T Consensus       208 ~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~  239 (434)
T 4b4t_Q          208 IYCPTQTVAELDLMSGILHCEDKDYKTAFSYF  239 (434)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            55556677888888888888888888887653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.57  E-value=0.00033  Score=68.81  Aligned_cols=93  Identities=14%  Similarity=0.040  Sum_probs=75.1

Q ss_pred             hhhhhhhcC--CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----
Q 008780          404 TGNRLFKEG--KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-----  476 (554)
Q Consensus       404 ~G~~~~~~g--~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-----  476 (554)
                      .+...+..|  ++..|...|+++..    ..|...         ...+++|   |++++|+|++|...++.+++.     
T Consensus       182 ea~v~l~~g~~~~q~A~~~f~El~~----~~p~~~---------~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~  245 (310)
T 3mv2_B          182 ESYIKFATNKETATSNFYYYEELSQ----TFPTWK---------TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVE  245 (310)
T ss_dssp             HHHHHHHHTCSTTTHHHHHHHHHHT----TSCSHH---------HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHH----hCCCcc---------cHHHHHH---HHHHcCCHHHHHHHHHHHHHhccccc
Confidence            343344444  89999999999776    444310         0345555   899999999999999988876     


Q ss_pred             -----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          477 -----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       477 -----~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                           +|+++.++.++..+...+|+  +|.+.+.++.+++|++
T Consensus       246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h  286 (310)
T 3mv2_B          246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH  286 (310)
T ss_dssp             TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence                 58999999999999999998  8999999999999998

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.56  E-value=0.00016  Score=75.00  Aligned_cols=94  Identities=10%  Similarity=0.042  Sum_probs=74.7

Q ss_pred             hhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc-CCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008780          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  471 (554)
Q Consensus       393 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~-~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  471 (554)
                      +....+..+.+.|..+..+|+|++|+.+|+++|...... .+.++        .....++|+|..|..+|+|++|+.++.
T Consensus       324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp--------~~a~~l~nLa~~~~~~g~~~eA~~~~~  395 (429)
T 3qwp_A          324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP--------VRGVQVMKVGKLQLHQGMFPQAMKNLR  395 (429)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH--------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh--------HHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            445678889999999999999999999999999977654 34442        346789999999999999999999999


Q ss_pred             HHHhh-----CCCC---hHHHHHHHHHHHHc
Q 008780          472 KVLDA-----NPAH---VKGLYRRGMAYMAL  494 (554)
Q Consensus       472 ~al~~-----~p~~---~ka~~~~g~a~~~l  494 (554)
                      +|+++     -|++   ...+.+++.++..+
T Consensus       396 ~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          396 LAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            99976     3444   34455566666544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.44  E-value=0.00035  Score=72.47  Aligned_cols=75  Identities=9%  Similarity=0.000  Sum_probs=64.2

Q ss_pred             hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc-CCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008780          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (554)
Q Consensus       394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~-~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  472 (554)
                      ....+..+.+.|..+..+|+|++|+.+|+++|...... .+.++        .....++|||..|..+|+|++|+..+++
T Consensus       336 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp--------~~a~~l~nLa~~~~~qg~~~eA~~~~~~  407 (433)
T 3qww_A          336 NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL--------NVASMWLKLGRLYMGLENKAAGEKALKK  407 (433)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh--------HHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            34567788899999999999999999999999976654 44443        2367899999999999999999999999


Q ss_pred             HHhh
Q 008780          473 VLDA  476 (554)
Q Consensus       473 al~~  476 (554)
                      |+++
T Consensus       408 Al~i  411 (433)
T 3qww_A          408 AIAI  411 (433)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9976

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.41  E-value=0.0038  Score=63.76  Aligned_cols=128  Identities=16%  Similarity=0.163  Sum_probs=100.9

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc-----C--CCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-----N--PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  467 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~-----~--p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~  467 (554)
                      +.....+...|......++...|...|.+|+..+..-     .  ++-..+...+.+.+..+...++.+++.+|++.+|+
T Consensus       112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~  191 (388)
T 2ff4_A          112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI  191 (388)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            3345566677777778899999999999999865421     0  11122345567777888899999999999999999


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHHHHHHH
Q 008780          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK-------VDKSSEPDATAALSK  524 (554)
Q Consensus       468 ~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~-------l~P~~~~~~~~~l~~  524 (554)
                      ..+.+++..+|-+..+|..+-.+|...|+..+|++.|+++.+       ++|.  +..+.....
T Consensus       192 ~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~--~~l~~l~~~  253 (388)
T 2ff4_A          192 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG--PTLRALNER  253 (388)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC--HHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC--HHHHHHHHH
Confidence            999999999999999999999999999999999999988755       3676  344544444

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.31  E-value=0.0016  Score=64.00  Aligned_cols=100  Identities=7%  Similarity=-0.019  Sum_probs=77.5

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-  479 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~-  479 (554)
                      +...|..++..|++++|++.+.+++.    ..+...         ...++..++.+++++++.+.|...+++..+.+|+ 
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~----~~~~~~---------~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~  169 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGID----NDEAEG---------TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT  169 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHT----SSCSTT---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhc----cCCCcC---------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence            45788888899999999999999887    554110         1567888899999999999999999999888883 


Q ss_pred             ---ChHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHhCCC
Q 008780          480 ---HVKGLYRRGMA--YMALG--EFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       480 ---~~ka~~~~g~a--~~~l~--~~~~A~~~~~~al~l~P~  513 (554)
                         +-..+..++.+  .+..|  ++.+|...|+++....|+
T Consensus       170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred             cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence               23445555555  55556  899999999998887776

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.30  E-value=0.00018  Score=73.93  Aligned_cols=86  Identities=23%  Similarity=0.278  Sum_probs=63.9

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  479 (554)
                      .+...|+.++..|+|++|+.+|.++                       .-+.++|.|+.++|+|++|++.+.++     +
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----------------------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~  175 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV-----------------------SNFGRLASTLVHLGEYQAAVDGARKA-----N  175 (449)
T ss_dssp             -------------CTTTHHHHHHHT-----------------------TCHHHHHHHHHTTTCHHHHHHHHHHH-----T
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-----------------------hhHHHHHHHHHHhccHHHHHHHHHHc-----C
Confidence            7889999999999999999999975                       24789999999999999999999999     5


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ++++|.....++..+|+|+.|..+... +..+|++
T Consensus       176 ~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~  209 (449)
T 1b89_A          176 STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE  209 (449)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH
T ss_pred             CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh
Confidence            899999999999999999999887775 4456643

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.04  E-value=0.0022  Score=53.69  Aligned_cols=45  Identities=13%  Similarity=0.158  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (554)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  490 (554)
                      .-.+++.+|..|+++|+|.+|+.+|+.+|+.+|+|..|.-.+..+
T Consensus        73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           73 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999998887655443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.99  E-value=0.007  Score=51.53  Aligned_cols=76  Identities=12%  Similarity=0.030  Sum_probs=53.8

Q ss_pred             HHHhhhhhhhcCC---HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          401 IRVTGNRLFKEGK---FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       401 ~~~~G~~~~~~g~---~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      .++.+..+.+..+   -.+++..++..++    ..|..          +-.|++.+|..++|+++|.+|..+|+.+|+.+
T Consensus        42 ~F~YAw~Lv~S~~~~di~~GI~LLe~l~~----~~~~~----------~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e  107 (144)
T 1y8m_A           42 RFNYAWGLIKSTDVNDERLGVKILTDIYK----EAESR----------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  107 (144)
T ss_dssp             HHHHHHHHHHSSSHHHHHHHHHHHHHHHH----HCCST----------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHh----cCccc----------hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            3444444554433   2345555555555    34433          35799999999999999999999999999999


Q ss_pred             CCChHHHHHHHHH
Q 008780          478 PAHVKGLYRRGMA  490 (554)
Q Consensus       478 p~~~ka~~~~g~a  490 (554)
                      |+|..|.-.+..+
T Consensus       108 P~n~QA~~Lk~~I  120 (144)
T 1y8m_A          108 RNNKQVGALKSMV  120 (144)
T ss_dssp             CCCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9998876654433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.91  E-value=0.0041  Score=54.47  Aligned_cols=95  Identities=13%  Similarity=0.167  Sum_probs=65.2

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCC--------hhHH--HHHhhhHHHHHHHHHHHHHHccCHHH
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD--------DEEG--KVFVGKRNLLHLNVAACLLKLGECRK  465 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~--------~ee~--~~~~~~~~~~~~nla~~~~kl~~~~~  465 (554)
                      ..++.+.-.|+.+|.+++|.+|...|++||.....+.-..        ....  .........+.+.+|.||.+++++.+
T Consensus        61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~  140 (167)
T 3ffl_A           61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD  140 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence            3577788999999999999999999999998665321000        0000  00001124688999999999999999


Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHH
Q 008780          466 SIEACNKVLDANPAHVKGLYRRGMAY  491 (554)
Q Consensus       466 A~~~~~~al~~~p~~~ka~~~~g~a~  491 (554)
                      |+...+.+-. .-..++.-.-+|+.|
T Consensus       141 Ai~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          141 AIAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             HHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence            9998765422 235677777777655

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.86  E-value=0.0063  Score=51.14  Aligned_cols=45  Identities=13%  Similarity=0.092  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (554)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  490 (554)
                      +..+++.+|..+.|+|+|.+|..+|+.+|+.+|+|..|.-.+..+
T Consensus        77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            367999999999999999999999999999999999887655444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.83  E-value=0.02  Score=49.11  Aligned_cols=128  Identities=9%  Similarity=0.008  Sum_probs=92.4

Q ss_pred             ChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHH
Q 008780          390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA  469 (554)
Q Consensus       390 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  469 (554)
                      +.+..+..+..+-..|+-+-. +-.++-+..|++|+.    ..|.+.   ...-.-.+.++.+.|.. ..+++.++|...
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d-~~l~rlrd~YerAia----~~Pp~k---~~~wrrYI~LWIrYA~~-~ei~D~d~aR~v   82 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSD-ALLNKLIGRYSQAIE----ALPPDK---YGQNESFARIQVRFAEL-KAIQEPDDARDY   82 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCH-HHHHHHHHHHHHHHH----HSCGGG---GTTCHHHHHHHHHHHHH-HHHHCGGGCHHH
T ss_pred             CHHHHHHHHHHHHHcCCCchh-hHHHHHHHHHHHHHH----cCCccc---cccHHHHHHHHHHHHHH-HHhcCHHHHHHH
Confidence            445555555555555655444 444788899999998    333321   11122235566666644 567999999999


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       470 ~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      |+.++.+....++.|...|+--...|+...|++.+.+|+.+.|....-...+++.|+
T Consensus        83 y~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~  139 (161)
T 4h7y_A           83 FQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN  139 (161)
T ss_dssp             HHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence            999999988889999999999999999999999999999999987555555555554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.77  E-value=0.023  Score=62.18  Aligned_cols=145  Identities=6%  Similarity=-0.002  Sum_probs=85.0

Q ss_pred             HHhhhhhhhcCCHHHHHHHHHHHHHHhh-------ccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          402 RVTGNRLFKEGKFELAKAKYEKVLRDFN-------HVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~-------~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      ...+....+.|+++.|...|++++..+.       .-.|.+++....+......+|...+.+..+.+..+.|...+.+|+
T Consensus       382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~  461 (679)
T 4e6h_A          382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR  461 (679)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455556678899999999999998541       111332221111222223456666666667777777777777777


Q ss_pred             hh-CCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780          475 DA-NPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       475 ~~-~p~~~ka~~~~g~a~~~l~-~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      +. .+...+.|...|..-...+ +++.|+..|+++++..|++ ...+.....+........++|  ..|.+.....+
T Consensus       462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~-~~~w~~y~~fe~~~~~~~~AR--~lferal~~~~  535 (679)
T 4e6h_A          462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD-GEYINKYLDFLIYVNEESQVK--SLFESSIDKIS  535 (679)
T ss_dssp             HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTCHHHHH--HHHHHHTTTSS
T ss_pred             HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc-hHHHHHHHHHHHhCCCHHHHH--HHHHHHHHhcC
Confidence            76 4344556655555555554 3777777777777777766 444444333333333344444  66666655443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.48  E-value=0.0094  Score=59.65  Aligned_cols=131  Identities=8%  Similarity=-0.022  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHhhccCCCChhHH-------HHHhhhHHHHHHHHHHHHHHccCH-----------HHHHHHHHHHHhh
Q 008780          415 ELAKAKYEKVLRDFNHVNPQDDEEG-------KVFVGKRNLLHLNVAACLLKLGEC-----------RKSIEACNKVLDA  476 (554)
Q Consensus       415 ~~A~~~Y~~al~~l~~~~p~~~ee~-------~~~~~~~~~~~~nla~~~~kl~~~-----------~~A~~~~~~al~~  476 (554)
                      ..|..+|-++..++....+.+-...       -.+......++..++.||..+..+           ..|+. ...++..
T Consensus       194 ~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~-a~~a~~~  272 (372)
T 3ly7_A          194 GALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID-NIVTLPE  272 (372)
T ss_dssp             GGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HHHTCGG
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH-HHHhccc
Confidence            3677788888777665433221111       112233445777788888642211           12222 1134467


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      +|.++.++..++.++...|++++|+..+++|+.++|+  ......+..+.......+.+.  ..|.+.|...|.
T Consensus       273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s--~~a~~llG~~~~~~G~~~eA~--e~~~~AlrL~P~  342 (372)
T 3ly7_A          273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS--WLNYVLLGKVYEMKGMNREAA--DAYLTAFNLRPG  342 (372)
T ss_dssp             GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHSCS
T ss_pred             CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCHHHHH--HHHHHHHhcCCC
Confidence            8999999999999999999999999999999999975  345566666665555444444  567777766553

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.43  E-value=0.014  Score=64.01  Aligned_cols=134  Identities=10%  Similarity=-0.059  Sum_probs=94.2

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCC
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDANPA  479 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~~p~  479 (554)
                      +...++...+.+..+.|...|.+|+..+   .+..           ..+|...|..-.+.+ +++.|...++++|+..|+
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~---~~~~-----------~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~  502 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRLK---KLVT-----------PDIYLENAYIEYHISKDTKTACKVLELGLKYFAT  502 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTG---GGSC-----------THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCCC-----------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence            4444555556788899999999998821   1111           345666666655654 499999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS--SEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      ++..|...+......++.+.|+..|++|+...|+  ....++.............+..+  +.++++....|.
T Consensus       503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~--~v~~R~~~~~P~  573 (679)
T 4e6h_A          503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR--TLEKRFFEKFPE  573 (679)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH--HHHHHHHHHSTT
T ss_pred             chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHhCCC
Confidence            9999988888888999999999999999999884  22455555555555444222233  556666554443

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=95.32  E-value=0.1  Score=50.64  Aligned_cols=120  Identities=15%  Similarity=0.117  Sum_probs=75.5

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc-------CHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-------ECRKSI  467 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~-------~~~~A~  467 (554)
                      +.......+.|-.++..|+|.+|+..|+.+|..+--+.-++++|.++.+++...|...+-.+-+.+.       +..+.+
T Consensus       111 l~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~l  190 (325)
T 3mv2_A          111 LDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRML  190 (325)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            3444445678999999999999999999999876655445556666666665555433333333321       112222


Q ss_pred             HHHHH--HHhhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          468 EACNK--VLDANPAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       468 ~~~~~--al~~~p~~-~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +...-  -..+.|.+ .-++..--...++.++|..|....++.|++.|..
T Consensus       191 ELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~  240 (325)
T 3mv2_A          191 ELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG  240 (325)
T ss_dssp             HHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence            21111  11223333 3344444556778899999999999999999975

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.29  E-value=0.27  Score=42.82  Aligned_cols=68  Identities=15%  Similarity=0.106  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHh--h---------------CCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLD--A---------------NPAHVKGLY-RRGMAYMALGEFEEAQRDFEMMM  508 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~--~---------------~p~~~ka~~-~~g~a~~~l~~~~~A~~~~~~al  508 (554)
                      +...+--+.||.++++|..|+...+..|+  +               ||.+-.-++ .+|..+..+|+.++|+..|.+..
T Consensus        62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf  141 (242)
T 3kae_A           62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF  141 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence            45566778999999999999999999992  2               244444444 46999999999999999999999


Q ss_pred             HhCCCC
Q 008780          509 KVDKSS  514 (554)
Q Consensus       509 ~l~P~~  514 (554)
                      ..+|--
T Consensus       142 ~~~~lf  147 (242)
T 3kae_A          142 GKSFLF  147 (242)
T ss_dssp             HHCCCH
T ss_pred             CCcccc
Confidence            988753

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.21  E-value=0.13  Score=56.39  Aligned_cols=60  Identities=17%  Similarity=0.147  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008780          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM  507 (554)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~a  507 (554)
                      .++.--|..++..++|+-|+..+++|...-|....+|++++.+|..+++|+.|+-.++.+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            345555666778899999999999999999999999999999999999999999888876

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=95.20  E-value=0.17  Score=49.14  Aligned_cols=117  Identities=14%  Similarity=0.134  Sum_probs=76.5

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc--cCH-----HHHHHH
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--GEC-----RKSIEA  469 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl--~~~-----~~A~~~  469 (554)
                      ......+.|-.++..|+|.+|+..|+.+|..+--+.-++++|.++.+++...|...+-.+-+.+  ++.     ++..+.
T Consensus       101 ~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~  180 (320)
T 3mkr_B          101 DLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRI  180 (320)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHH
Confidence            3444568899999999999999999999997665555666666666666665544443333333  211     222222


Q ss_pred             HHHHH-----hhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780          470 CNKVL-----DANPAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       470 ~~~al-----~~~p~~-~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~  513 (554)
                      ++-+-     .+.|.+ .-++..--...++.++|..|....++.|++.|+
T Consensus       181 lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~  230 (320)
T 3mkr_B          181 CEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK  230 (320)
T ss_dssp             HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            22221     223433 334444455677889999999999999999986

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.74  E-value=0.72  Score=48.30  Aligned_cols=109  Identities=13%  Similarity=-0.015  Sum_probs=76.6

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHH----------HHHh-------------------hhHHHHH
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG----------KVFV-------------------GKRNLLH  450 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~----------~~~~-------------------~~~~~~~  450 (554)
                      .+...+..+.+.|+.+.|...|.+|+.    . |.+..-+          +.+.                   .....+|
T Consensus       215 lW~~ya~~~~~~~~~~~ar~i~erAi~----~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw  289 (493)
T 2uy1_A          215 VYFFYSEYLIGIGQKEKAKKVVERGIE----M-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLR  289 (493)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----H-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh----C-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHH
Confidence            355667777788999999999999999    5 6543111          0000                   1112456


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC
Q 008780          451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       451 ~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~-~~~~A~~~~~~al~l~P~~  514 (554)
                      .+.+....+.+..+.|...+.+| ...+.....|...|..-..++ +++.|+..|+.+++..|++
T Consensus       290 ~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~  353 (493)
T 2uy1_A          290 INHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS  353 (493)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC
Confidence            66666777788899999999999 433335556666666666556 6999999999999998886

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.32  E-value=0.3  Score=49.38  Aligned_cols=98  Identities=13%  Similarity=0.030  Sum_probs=79.4

Q ss_pred             HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC---CC
Q 008780          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN---PA  479 (554)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~---p~  479 (554)
                      ..|..++..|+|.+|+..+.+.++.+..++.         ......++......|..++++.++...+.+|....   +.
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~  174 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDD---------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC  174 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence            6889999999999999999999998766532         23457788899999999999999999999987553   11


Q ss_pred             C----hHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 008780          480 H----VKGLYRRGMAYM-ALGEFEEAQRDFEMMMK  509 (554)
Q Consensus       480 ~----~ka~~~~g~a~~-~l~~~~~A~~~~~~al~  509 (554)
                      +    +.....-|..|+ ..++|..|..+|-.+++
T Consensus       175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            2    234445688999 89999999999999875

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.28  E-value=0.17  Score=55.67  Aligned_cols=59  Identities=24%  Similarity=0.297  Sum_probs=53.9

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (554)
                      .+..++..+..+++|+.|+.+-++|+.    +.|.+           ..+|..||.||.++++|+.|+-..+.+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~----~aPse-----------F~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTE----LALDS-----------FESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHh----cCchh-----------hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            466778888899999999999999999    88888           889999999999999999999888776

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.25  E-value=0.52  Score=44.62  Aligned_cols=60  Identities=17%  Similarity=0.118  Sum_probs=56.4

Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780          456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (554)
Q Consensus       456 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~  515 (554)
                      .+++.++.++|+..+...++.+|.|++.-..+-+.++-.|+|+.|..-++.+.+++|+..
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            456789999999999999999999999999999999999999999999999999999863

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.66  E-value=0.28  Score=50.52  Aligned_cols=99  Identities=14%  Similarity=-0.000  Sum_probs=78.0

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC---
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN---  477 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~---  477 (554)
                      +..+|..+++.|++..|++.|.++..+...  +..          ...+++++..+++..++|..+..++.++..+-   
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~--~~~----------kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~  201 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAIS--TGA----------KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG  201 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTC--CCS----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--hHH----------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence            468899999999999999999998885432  222          36788889999999999999999999987552   


Q ss_pred             CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          478 PAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       478 p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      ++.   .+.....|.+++..++|.+|...|-.++.-.
T Consensus       202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            221   2345556888888999999999998876643

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=91.82  E-value=2.1  Score=40.52  Aligned_cols=64  Identities=17%  Similarity=0.238  Sum_probs=53.6

Q ss_pred             hhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHH
Q 008780          405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  483 (554)
Q Consensus       405 G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka  483 (554)
                      ...+++.++.++|+......++    ..|.|           ..+...+...+.-.|+|++|...++.+.+++|.....
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR----~~P~d-----------a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIK----ASPKD-----------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHH----TCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHH----hCCcC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            3568899999999999999999    89998           4555555555667899999999999999999987654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=91.74  E-value=1.5  Score=45.74  Aligned_cols=111  Identities=10%  Similarity=-0.017  Sum_probs=80.4

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhC
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDAN  477 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~~  477 (554)
                      ..+...+....+.+..+.|...|.+| .    ..+..           ..++...|..-...+ +++.|...++.+++..
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~----~~~~~-----------~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~  350 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-G----NEGVG-----------PHVFIYCAFIEYYATGSRATPYNIFSSGLLKH  350 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-T----TSCCC-----------HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-h----CCCCC-----------hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence            34455555555677899999999999 4    22222           345555565555555 6999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      |+++..+...+.-...+|+.+.|+..|+++    +.+ ..++.....+.....
T Consensus       351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~-~~lw~~~~~fE~~~G  398 (493)
T 2uy1_A          351 PDSTLLKEEFFLFLLRIGDEENARALFKRL----EKT-SRMWDSMIEYEFMVG  398 (493)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCB-HHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHH-HHHHHHHHHHHHHCC
Confidence            999888877788888899999999999998    233 456666666555544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.60  E-value=1.2  Score=46.47  Aligned_cols=79  Identities=9%  Similarity=0.016  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      ...++.++|........+..|..+|.+|+.+.|++-..|..+|......++.-+|+-+|.+++...... +.++.-|..+
T Consensus       151 ~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf-~~a~~nL~~~  229 (497)
T 1ya0_A          151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF-PAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC-HHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCC-hhHHHHHHHH
Confidence            345778889888888999999999999999999999999999999999999999999999999876555 3444444433

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=91.41  E-value=0.43  Score=36.63  Aligned_cols=42  Identities=29%  Similarity=0.298  Sum_probs=36.2

Q ss_pred             CChhh-hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780          389 LSFDG-IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (554)
Q Consensus       389 ~~~~~-~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~  430 (554)
                      |+..+ .++.|..+..+|...=+.|+|.+|+.+|..|+++|..
T Consensus         1 M~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   43 (83)
T 2v6y_A            1 MSAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ   43 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34445 6788999999999999999999999999999998754

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=91.17  E-value=3.3  Score=43.33  Aligned_cols=100  Identities=10%  Similarity=0.104  Sum_probs=72.5

Q ss_pred             cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCChHHHHHHHH
Q 008780          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYRRGM  489 (554)
Q Consensus       411 ~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-p~~~ka~~~~g~  489 (554)
                      .+..+.|...|.+...  ..+.|+            ...|+.+..+|.+.|++++|...+++..+.. .-+...|-.+-.
T Consensus        83 ~~~l~~A~~lf~~M~~--~G~~Pd------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~  148 (501)
T 4g26_A           83 NPGLSRGFDIFKQMIV--DKVVPN------------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALF  148 (501)
T ss_dssp             CHHHHHHHHHHHHHHH--TTCCCC------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHH--hCCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHH
Confidence            4456778887777554  123343            4678888889999999999999999887653 236888888889


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Q 008780          490 AYMALGEFEEAQRDFEMMMKV--DKSSEPDATAALSKL  525 (554)
Q Consensus       490 a~~~l~~~~~A~~~~~~al~l--~P~~~~~~~~~l~~l  525 (554)
                      +|...|++++|.+.|+...+.  .|+. ......+.-+
T Consensus       149 ~~~~~g~~~~A~~l~~~M~~~G~~Pd~-~ty~~Li~~~  185 (501)
T 4g26_A          149 GFCRKGDADKAYEVDAHMVESEVVPEE-PELAALLKVS  185 (501)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTCCCCH-HHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHH
Confidence            999999999999999988774  5653 3344444433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=89.74  E-value=4.4  Score=42.30  Aligned_cols=99  Identities=9%  Similarity=0.027  Sum_probs=79.8

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-CC
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-PA  479 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-p~  479 (554)
                      +...-+.+.+.|++++|...|++..+  ..+.|+            ...|+.+-.+|.+.|++++|...+++..+.. .-
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~--~g~~Pd------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P  173 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKA--FGIQPR------------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP  173 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH--TTCCCC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCc------------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            44556678899999999999998766  113343            4678888888999999999999999988753 23


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Q 008780          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV--DKS  513 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l--~P~  513 (554)
                      +...|..+-.++...|++++|.+.|++..+.  .|+
T Consensus       174 d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps  209 (501)
T 4g26_A          174 EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS  209 (501)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred             CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence            6788999999999999999999999987764  565

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=88.74  E-value=1.5  Score=35.90  Aligned_cols=43  Identities=23%  Similarity=0.315  Sum_probs=37.2

Q ss_pred             CCChh-hhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780          388 GLSFD-GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (554)
Q Consensus       388 ~~~~~-~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~  430 (554)
                      .|+.. ..++.|..+..+|...=..++|.+|+.+|..|+++|..
T Consensus         7 ~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~   50 (117)
T 2cpt_A            7 GMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   50 (117)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            45555 67889999999999999999999999999999998754

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.71  E-value=8.4  Score=39.47  Aligned_cols=106  Identities=13%  Similarity=0.091  Sum_probs=78.4

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      +.+......+..++..|+|.+|..............  .+       ...+..+++.....|+..++|.+|...++++..
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--~~-------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~  205 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS--ME-------MSEKIQFILEQMELSILKGDYSQATVLSRKILK  205 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--SC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--cc-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            356666788999999999999999998876532221  22       123466777888889999999999999998742


Q ss_pred             ---hCCCC--hH--HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          476 ---ANPAH--VK--GLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       476 ---~~p~~--~k--a~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                         -.+.+  .+  .+...|..+...++|.+|-.+|..++..
T Consensus       206 ~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          206 KTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             hhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               22322  33  4455688888999999999999988764

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=87.57  E-value=1.2  Score=34.11  Aligned_cols=42  Identities=14%  Similarity=0.094  Sum_probs=35.5

Q ss_pred             CChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780          389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (554)
Q Consensus       389 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~  430 (554)
                      |+....++.|..+..+|...=..|+|.+|+.+|..|++++..
T Consensus         4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~   45 (85)
T 2v6x_A            4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML   45 (85)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            444456778889999999999999999999999999997654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=86.89  E-value=2.5  Score=44.10  Aligned_cols=80  Identities=10%  Similarity=-0.002  Sum_probs=70.0

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  478 (554)
                      ..+...|...--+..+..|...|.+|+.    +.|.+           ...|+.+|.++...++.-+|+-+|.++|....
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~----~~P~~-----------G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~  217 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQ----LVPSN-----------GQPYNQLAILASSKGDHLTTIFYYCRSIAVKF  217 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTB-----------SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHH----hCCCC-----------CchHHHHHHHHhcccccHHHHHHHHHHHhcCC
Confidence            3566788888888889999999999999    88987           78999999999999999999999999998877


Q ss_pred             CChHHHHHHHHHHHH
Q 008780          479 AHVKGLYRRGMAYMA  493 (554)
Q Consensus       479 ~~~ka~~~~g~a~~~  493 (554)
                      ..+.|.-++...+..
T Consensus       218 Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          218 PFPAASTNLQKALSK  232 (497)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHH
Confidence            788888888777764

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=86.71  E-value=1.7  Score=33.20  Aligned_cols=42  Identities=24%  Similarity=0.250  Sum_probs=36.2

Q ss_pred             CCh-hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780          389 LSF-DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (554)
Q Consensus       389 ~~~-~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~  430 (554)
                      |++ ...++.|..+..+|...=+.|+|.+|+.+|..|+++|..
T Consensus         9 ~~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A            9 MSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            444 356788999999999999999999999999999998754

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=86.25  E-value=2.8  Score=32.79  Aligned_cols=38  Identities=13%  Similarity=0.079  Sum_probs=33.7

Q ss_pred             hhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (554)
Q Consensus       393 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~  430 (554)
                      ..++.|..+..+|..+-+.++|.+|+.+|..|+++|..
T Consensus        10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~   47 (93)
T 1wfd_A           10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            45678888999999999999999999999999998754

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=84.04  E-value=4.7  Score=35.56  Aligned_cols=28  Identities=14%  Similarity=0.107  Sum_probs=21.4

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVL  425 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al  425 (554)
                      ...++..|.....+|++.-|.++|+++=
T Consensus        34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           34 SITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            3457788888888888888888887753

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=82.50  E-value=3.7  Score=31.54  Aligned_cols=35  Identities=14%  Similarity=0.128  Sum_probs=30.1

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~  430 (554)
                      ..|..+..+|..+-..|+|.+|+.+|..|+++|..
T Consensus        14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~   48 (86)
T 4a5x_A           14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ   48 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            35677888888889999999999999999998654

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=82.25  E-value=4.5  Score=31.13  Aligned_cols=37  Identities=22%  Similarity=0.249  Sum_probs=33.0

Q ss_pred             hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (554)
Q Consensus       394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~  430 (554)
                      -+..|-.+-.+++.+.+.|+|++||.+.++|..+|..
T Consensus        11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e   47 (97)
T 2crb_A           11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   47 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            3567888889999999999999999999999998865

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.95  E-value=6.8  Score=31.70  Aligned_cols=74  Identities=12%  Similarity=0.027  Sum_probs=55.8

Q ss_pred             hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc---cCC----CChhHHHHHhhhHHHHHHHHHHHHHHccCHH
Q 008780          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH---VNP----QDDEEGKVFVGKRNLLHLNVAACLLKLGECR  464 (554)
Q Consensus       392 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~---~~p----~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~  464 (554)
                      ....+.|-.+.++|-..=..|+-+.|+.+|++.+..|..   +..    ...+.|+..+.+......|+..+.-+++...
T Consensus        16 k~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le   95 (116)
T 2dl1_A           16 REAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILE   95 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777778887777789999999999999998764   222    3346788888888888889988887776544


Q ss_pred             H
Q 008780          465 K  465 (554)
Q Consensus       465 ~  465 (554)
                      .
T Consensus        96 ~   96 (116)
T 2dl1_A           96 K   96 (116)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=81.33  E-value=7.7  Score=38.92  Aligned_cols=72  Identities=13%  Similarity=0.040  Sum_probs=53.0

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCC--------C--C------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780          452 NVAACLLKLGECRKSIEACNKVLDANP--------A--H------------VKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (554)
Q Consensus       452 nla~~~~kl~~~~~A~~~~~~al~~~p--------~--~------------~ka~~~~g~a~~~l~~~~~A~~~~~~al~  509 (554)
                      ..|......++...|...+.+|+.+..        .  +            ..++..++.++..+|++++|+..+.+++.
T Consensus       120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~  199 (388)
T 2ff4_A          120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF  199 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            334444456889999999999998742        1  1            23455678888999999999999999999


Q ss_pred             hCCCChHHHHHHHHH
Q 008780          510 VDKSSEPDATAALSK  524 (554)
Q Consensus       510 l~P~~~~~~~~~l~~  524 (554)
                      .+|-++ .++..|-.
T Consensus       200 ~~P~~E-~~~~~lm~  213 (388)
T 2ff4_A          200 EHPYRE-PLWTQLIT  213 (388)
T ss_dssp             HSTTCH-HHHHHHHH
T ss_pred             hCCCCH-HHHHHHHH
Confidence            999984 44444433

>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}

Probab=81.04  E-value=5.6  Score=40.54  Aligned_cols=92  Identities=21%  Similarity=0.158  Sum_probs=49.6

Q ss_pred             hhhhhHHHHHHHHhhhh--hhhcCC-HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHH
Q 008780          391 FDGIMDEAEKIRVTGNR--LFKEGK-FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  467 (554)
Q Consensus       391 ~~~~~~~a~~~~~~G~~--~~~~g~-~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~  467 (554)
                      ..+++..|+.++.+++.  --+.-+ -..|+.+|++|+++|+.+...++-+       ....++++|.-      |+.|=
T Consensus       422 L~eKi~~AE~~~~k~e~~~n~~a~~yA~kAi~~Y~~Ai~~L~k~~~tdd~~-------~v~~~~~~ak~------yE~aG  488 (526)
T 2wb7_A          422 LQEKIDEAEQLLAKAKGMNNENAIEYAQGAIDEYKAAINDLQKAAQQDDYQ-------MFLNYLNAAKK------HEMAG  488 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHH-------HHHHHHHHHHH------HHHHH
T ss_pred             HHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCHH-------HHHHHHHHhhh------hhhcc
Confidence            44555566666665522  112222 3568899999999888876444211       13445555433      34433


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (554)
Q Consensus       468 ~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l  510 (554)
                      +++.               .|.-....|..+.|...-.+|-++
T Consensus       489 Dyy~---------------~AA~k~~yG~~eqAe~l~~~A~~~  516 (526)
T 2wb7_A          489 DYYV---------------NAARKALNGDLEQAKIDAEKAKEY  516 (526)
T ss_dssp             HHHH---------------HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHH---------------HHHHHHhcCccHHHHHHHHHHHHH
Confidence            3333               333344567777777666655544

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.18  E-value=3.5  Score=42.87  Aligned_cols=68  Identities=9%  Similarity=0.059  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANP--AH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p--~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ..+++-+-..|+..+.|++|.....++.-...  .|   +.-+|..|.++...++|.+|..+|..|++.-|.+
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            56788888899999999999999999853221  11   5567889999999999999999999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	554
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	3e-14
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	1e-11
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	7e-09
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	1e-13
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	1e-12
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	2e-08
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-13
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	8e-13
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	8e-13
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	2e-11
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	4e-10
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	2e-12
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	2e-10
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	4e-05
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	3e-12
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	8e-11
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	9e-08
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	8e-12
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	3e-11
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	2e-09
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-11
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-11
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	3e-11
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	5e-09
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	8e-06
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	3e-10
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	7e-08
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	6e-10
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	9e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-08
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	3e-09
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	1e-04
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	5e-09
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	2e-08
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	1e-07
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	6e-09
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	8e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-08
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	2e-07
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	3e-05
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.001
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	6e-06
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	0.002
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-05
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	2e-05
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	6e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-04
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	2e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	4e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	7e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.002
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.004
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	0.003

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 67.0 bits (163), Expect = 3e-14
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           D+L DG +I+R  R G+G      P   + + +H +G                 +G+   
Sbjct: 3   DLLEDGGIIRRTKRRGEGY---SNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGED-- 57

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY-DKFLRPANVPEGAHIQWEIELLGF 380
                  +P G +  +  M   E  ++   P Y + +       +   A + +E+ L  F
Sbjct: 58  -----HDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 112

Query: 381 EK 382
           EK
Sbjct: 113 EK 114

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 59.7 bits (144), Expect = 1e-11
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 10/118 (8%)

Query: 29  GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
           G +++   R G G S P++G +V  H   R    V      +   G+G           I
Sbjct: 8   GGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHD-------I 60

Query: 89  LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA 146
            +G+ + +  M + E  +  + P+  +GE   P         + EL +E+ +  F KA
Sbjct: 61  PIGIDKALEKMQREEQCILHLGPRYGFGEAGKP---KFGIEPNAELIYEVTLKSFEKA 115

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 51.6 bits (123), Expect = 7e-09
 Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 149 IADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVP 208
           + +D G++++    G+G+  P     V+  +  + G                      +P
Sbjct: 4   LLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHD--IP 61

Query: 209 KGLEMGIGTMTREEKAVIYVTSQ--YLTPSPLMPVVEGCEEVHFEVELVHLIQ 259
            G++  +  M REE+ ++++  +  +         +E   E+ +EV L    +
Sbjct: 62  IGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 114

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 65.5 bits (159), Expect = 1e-13
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 7/116 (6%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            DG ++K   ++G+G      P   + + VHY G L N  K         + G    F+ 
Sbjct: 8   KDGGVLKLIKKEGQGV---VKPTTGTTVKVHYVGTLENGTKFDSSR----DRGDQFSFNL 60

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
           G G V +G+++ V  M  GE+A  T   DY Y     P  +P GA + +E+EL  +
Sbjct: 61  GRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW 116

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.8 bits (152), Expect = 1e-12
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 29  GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
           G ++K + + G G   P+ G  V  H      +G    +       +G      LG+  +
Sbjct: 10  GGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENG----TKFDSSRDRGDQFSFNLGRGNV 65

Query: 89  LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           + G   G+ TM KGEV+ F ++    YG+       P   P    L FE+E+ ++
Sbjct: 66  IKGWDLGVATMTKGEVAEFTIRSDYGYGDAGS----PPKIPGGATLIFEVELFEW 116

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILS-HREGEPYFFTFGKSEVPKG 210
           D GV+K +  EGQG   P     VK        +G    S    G+ + F  G+  V KG
Sbjct: 9   DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKG 68

Query: 211 LEMGIGTMTREEKAVIYVTSQYL-TPSPLMPVVEGCEEVHFEVELV 255
            ++G+ TMT+ E A   + S Y    +   P + G   + FEVEL 
Sbjct: 69  WDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELF 114

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 66.5 bits (161), Expect = 2e-13
 Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 1/142 (0%)

Query: 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL 448
           +     +++A  ++  G   FK GK+  A  +Y K++          ++E K        
Sbjct: 6   MDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 65

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
             LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE ++
Sbjct: 66  AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 125

Query: 509 KVDKSSEPDATAALSKLKKQRQ 530
           +V+  +   A   +   +K+ +
Sbjct: 126 EVNPQN-KAARLQIFMCQKKAK 146

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 64.3 bits (155), Expect = 8e-13
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL 448
            + +  +  A  I+  GN  FK+ +   A  KY++ L  F H    DD+          +
Sbjct: 8   YTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 67

Query: 449 -LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 507
             +LN+A C  K  +  K+I+  +KVL  +  +VK LY+ G+A M  G  EEA+ +    
Sbjct: 68  SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 127

Query: 508 MKVDKSSEPDA----TAALSKLKKQRQ 530
             ++ ++  D        ++KLK+ R+
Sbjct: 128 ASLNPNN-LDIRNSYELCVNKLKEARK 153

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 8e-13
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 10/119 (8%)

Query: 29  GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
           G +++ +   G G + P++G  V         D +  +       G+G  +    G    
Sbjct: 8   GGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLE-- 65

Query: 89  LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147
                  I  M KGE S+  +KP   +G            P + EL +E+ +  F KAK
Sbjct: 66  -----RAIQRMEKGEHSIVYLKPSYAFGSVGKE---KFQIPPNAELKYELHLKSFEKAK 116

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 2e-11
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 11/121 (9%)

Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           DG +I+R    G+G      P   +++ V  +G   ++            +G+ L+    
Sbjct: 7   DGGIIRRIQTRGEGY---AKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLD---- 59

Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKF-LRPANVPEGAHIQWEIELLGFEKPK 384
              +P G E  ++ M  GE ++V   P YA+         +P  A +++E+ L  FEK K
Sbjct: 60  ---LPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAK 116

Query: 385 D 385
           +
Sbjct: 117 E 117

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 4e-10
 Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 4/114 (3%)

Query: 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKG 210
           +D G+++++   G+G+  P     V+  +     D          E         ++P G
Sbjct: 6   EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFE--IGEGENLDLPYG 63

Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPSPLMP--VVEGCEEVHFEVELVHLIQVRD 262
           LE  I  M + E +++Y+   Y   S       +    E+ +E+ L    + ++
Sbjct: 64  LERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKE 117

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 2e-12
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)

Query: 31  LMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSE---YGGKGIPIRHVLGKSK 87
             K+V++ G   + P  GD V    T    DG + ++             P+   +G  K
Sbjct: 3   YTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGK 62

Query: 88  ILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           ++ G  E + TM KGE +  +++P+  YG+   P    +  P + +L FE+E++D 
Sbjct: 63  VIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQP---DAKIPPNAKLTFEVELVDI 115

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 268 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLN---EEKKVFYDTRVDNDGQPLEFSS 324
           +  K  ++ G      + P    ++   Y G L +    +  +    +   + +PL F  
Sbjct: 2   KYTKSVLKKGDKT---NFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKV 58

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRP-ANVPEGAHIQWEIELLGFE 381
           G G V  G++  +  M  GE A +   P++AY K  +P A +P  A + +E+EL+  +
Sbjct: 59  GVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDID 116

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 10/112 (8%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE--------GEPYFFTFGKS 205
              K V+ +G     P+    V  W +    DG +  ++ +         +P  F  G  
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 206 EVPKGLEMGIGTMTREEKAVIYVTSQYLTPS--PLMPVVEGCEEVHFEVELV 255
           +V +G +  + TM++ EKA + +  ++           +    ++ FEVELV
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 3e-12
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            D  ++K   R+G G    + P+    + VHY G LL+  K      R D          
Sbjct: 9   QDEGVLKVIKREGTGT---EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFD----L 61

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382
           G+G V + +++ +  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+ 
Sbjct: 62  GKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG 119

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (138), Expect = 8e-11
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 8/115 (6%)

Query: 29  GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
             ++K + R G G   P  GD+V  H T   LDG    +       +       LGK ++
Sbjct: 11  EGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDG----TKFDSSLDRKDKFSFDLGKGEV 66

Query: 89  LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           +      I TM  GEV     KP+  YG        P   P +  L FE+E+ +F
Sbjct: 67  IKAWDIAIATMKVGEVCHITCKPEYAYGSAGS----PPKIPPNATLVFEVELFEF 117

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 9e-08
 Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 2/106 (1%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGE-PYFFTFGKSEVPKG 210
           D GV+K +  EG G E P     V    +    DG    S  + +  + F  GK EV K 
Sbjct: 10  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 69

Query: 211 LEMGIGTMTREEKAVIYVTSQYL-TPSPLMPVVEGCEEVHFEVELV 255
            ++ I TM   E   I    +Y    +   P +     + FEVEL 
Sbjct: 70  WDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELF 115

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 59.8 bits (144), Expect = 8e-12
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 8/115 (6%)

Query: 29  GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
             ++K V R G G+ TP  GD+V  H   +  +G   +S+         P    +GK ++
Sbjct: 4   RGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRN----EPFVFSIGKGQV 59

Query: 89  LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           +     G+ TM KGE+     KP+  YG       +    P +  L FE+E++DF
Sbjct: 60  IKAWDIGVATMKKGEICHLLCKPEYAYGAT----GSLPKIPSNATLFFEVELLDF 110

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 58.2 bits (140), Expect = 3e-11
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 7/116 (6%)

Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R G GE   + P+    + VHY G L N +K         +  +P  FS G
Sbjct: 3   DRGVLKIVKRVGHGE---ETPMIGDRVYVHYNGKLANGKKFDSSH----DRNEPFVFSIG 55

Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +E+ELL F+
Sbjct: 56  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDFK 111

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYF-FTFGKSEVPK 209
            D GV+K V   G G ETP     V    + K  +GK   S  +    F F+ GK +V K
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIK 61

Query: 210 GLEMGIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELV 255
             ++G+ TM + E   +    +Y   +   +P +     + FEVEL+
Sbjct: 62  AWDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELL 108

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.9 bits (149), Expect = 1e-11
 Identities = 28/147 (19%), Positives = 58/147 (39%), Gaps = 16/147 (10%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
            A++++  GNRLF   K+  A A Y + +      NP                + N A C
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAV-----------YYTNRALC 47

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
            LK+ +  +++  C + L+ +   VK  +  G   + +  ++EA  + +    + K    
Sbjct: 48  YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

Query: 517 D-ATAALSKLKKQRQVKLKVRLENSLK 542
           +      S L+  ++ +     E  + 
Sbjct: 108 NFGDDIPSALRIAKKKRWNSIEERRIH 134

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 2e-11
 Identities = 42/146 (28%), Positives = 85/146 (58%), Gaps = 1/146 (0%)

Query: 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL 448
           ++ +  ++++  ++  G   FKEGK++ A  +Y+K++    + +   +EE +     R  
Sbjct: 4   MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 63

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
            HLN+A C LKL     +IE+CNK L+ +  + KGL RRG A++A+ +FE A+ DF+ ++
Sbjct: 64  SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL 123

Query: 509 KVDKSSEPDATAALSKLKKQRQVKLK 534
           ++  ++   A   L+  +++ + +L 
Sbjct: 124 QLYPNN-KAAKTQLAVCQQRIRRQLA 148

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.6 bits (141), Expect = 3e-11
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 25  KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLG 84
           +++ G++    + PG G + P  GD V  H T    +G   +S       +G P +  +G
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDS----SVDRGSPFQCNIG 57

Query: 85  KSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
             +++ G   GIP +  GE +   +     YG        P   P +  L F++E++ 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGF----PGLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (124), Expect = 5e-09
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 7/114 (6%)

Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           +G +   RI  G G      P    L+ +HY G L N +K         + G P + + G
Sbjct: 5   EGNVKIDRISPGDGA---TFPKTGDLVTIHYTGTLENGQKFDSSV----DRGSPFQCNIG 57

Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 379
            G V +G+++ +  +  GE A +T P  YAY     P  +P  + + +++ELL 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (100), Expect = 8e-06
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 2/104 (1%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILS-HREGEPYFFTFGKSEVPKGLE 212
            V    I+ G G   P+    V    +    +G+   S    G P+    G  +V KG +
Sbjct: 7   NVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWD 66

Query: 213 MGIGTMTREEKAVIYVTSQYL-TPSPLMPVVEGCEEVHFEVELV 255
           +GI  ++  EKA + +   Y   P     ++     + F+VEL+
Sbjct: 67  VGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 57.6 bits (138), Expect = 3e-10
 Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 12/137 (8%)

Query: 246 EEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEK 305
           +   F  E  +   V  +    +       +G      D       + V Y G L++   
Sbjct: 79  KGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDT------VTVEYTGRLIDGTV 132

Query: 306 KVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV 365
               +      G+P  F      V  G+   ++LM  G    +  P   AY        +
Sbjct: 133 FDSTE----KTGKPATF--QVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPI 186

Query: 366 PEGAHIQWEIELLGFEK 382
                + ++I L+  +K
Sbjct: 187 GPNETLIFKIHLISVKK 203

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 51.0 bits (121), Expect = 7e-08
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 10/121 (8%)

Query: 26  IVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGK 85
           +V  S ++  +   G    P   D V    T R +DG + +ST                 
Sbjct: 94  VVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTE------KTGKPATFQV 147

Query: 86  SKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK 145
           S+++ G  E +  M  G      +   + YG              +E L F+I +I   K
Sbjct: 148 SQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRS----VGGPIGPNETLIFKIHLISVKK 203

Query: 146 A 146
           +
Sbjct: 204 S 204

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.2 bits (134), Expect = 6e-10
 Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 2/142 (1%)

Query: 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL- 448
             D I+  +E ++  GN  FK   +E+A  KY KVLR         ++     +    L 
Sbjct: 19  DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALS 78

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
             LN+ AC LK+ + + ++++C + L+ +P++ K LYRR   +  L E+++A  D +   
Sbjct: 79  CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 138

Query: 509 KVDKSSEPDATAALSKLKKQRQ 530
           ++         A L K+K++ +
Sbjct: 139 EIAPED-KAIQAELLKVKQKIK 159

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 9e-10
 Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 24/141 (17%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
           +A K +  GN  +K+  F+ A   Y+K       ++P +                N AA 
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKA----KELDPTNMT-----------YITNQAAV 47

Query: 457 LLKLGECRKSIEACNKVLDANPAHV-------KGLYRRGMAYMALGEFEEAQRDFEMMMK 509
             + G+  K  E C K ++    +        K   R G +Y    ++++A   +   + 
Sbjct: 48  YFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107

Query: 510 VDKSSEPDATAALSKLKKQRQ 530
             ++  PD      + +K  +
Sbjct: 108 EHRT--PDVLKKCQQAEKILK 126

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 15/104 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            +R ++ G FE A+    ++ R      P +             + L +++   +     
Sbjct: 6   AHREYQAGDFEAAERHCMQLWR----QEPDNTG-----------VLLLLSSIHFQCRRLD 50

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
           +S       +  NP   +     G  Y   G+ +EA   +   +
Sbjct: 51  RSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL 94

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 6e-08
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 15/91 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            N   ++G  E A   Y K L     V P+               H N+A+ L + G+ +
Sbjct: 312 ANIKREQGNIEEAVRLYRKALE----VFPEFAA-----------AHSNLASVLQQQGKLQ 356

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALG 495
           +++    + +  +P         G     + 
Sbjct: 357 EALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.3 bits (127), Expect = 3e-09
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 4/124 (3%)

Query: 24  MKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPI--RH 81
             + P  L       G G      G  +  H   +  +G + +S+ +        I    
Sbjct: 3   FSVSPSGLAFCDKVVGYGP-EAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGE 61

Query: 82  VLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDC-PVAAPSTFPKDEELHFEIEM 140
           V+      +   +GIP ML G     ++ P++ YG+            P    L F+IE 
Sbjct: 62  VIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEY 121

Query: 141 IDFA 144
           I  A
Sbjct: 122 IGKA 125

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 19/122 (15%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           L       G G   +       L+  HY G L N +          N G+PL F  G G 
Sbjct: 10  LAFCDKVVGYGPEAV----KGQLIKAHYVGKLENGKVFDSSY----NRGKPLTFRIGVGE 61

Query: 329 VPEGFEMCV------RLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQWEIEL 377
           V +G++  +        ML G    +  PP+ AY             +P  + + ++IE 
Sbjct: 62  VIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEY 121

Query: 378 LG 379
           +G
Sbjct: 122 IG 123

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 5e-09
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 31  LMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILL 90
           +    + PG G + P  G     H T    DG            +  P + +LGK +++ 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDG----KKFDSSRDRNKPFKFMLGKQEVIR 57

Query: 91  GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           G  EG+  M  G+ +   + P   YG        P   P    L F++E++  
Sbjct: 58  GWEEGVAQMSVGQRAKLTISPDYAYG----ATGHPGIIPPHATLVFDVELLKL 106

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 2e-08
 Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           +    I  G G      P       VHY GML + +K      R       L    G+  
Sbjct: 2   VQVETISPGDGR---TFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFML----GKQE 54

Query: 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           V  G+E  V  M  G+ A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 55  VIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILS-HREGEPYFFTFGKSEVPKGLE 212
           GV  + I+ G G   P+         +    DGK   S     +P+ F  GK EV +G E
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 213 MGIGTMTREEKAVIYVTSQY-LTPSPLMPVVEGCEEVHFEVELV 255
            G+  M+  ++A + ++  Y    +    ++     + F+VEL+
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 54.1 bits (129), Expect = 6e-09
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 12/122 (9%)

Query: 22  RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRH 81
           + +K     L+  V+  G G+  P D D V  +     +DG   ++       +G P+  
Sbjct: 100 KGVKTSSTGLVYQVVEAGKGE-APKDSDTVVVNYKGTLIDGKEFDN----SYTRGEPLSF 154

Query: 82  VLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMI 141
            L       G  EG+  + KG      + P++ YG+   P       P +  L F++E++
Sbjct: 155 RLDGVIP--GWTEGLKNIKKGGKIKLVIPPELAYGKAGVP-----GIPPNSTLVFDVELL 207

Query: 142 DF 143
           D 
Sbjct: 208 DV 209

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 50.6 bits (120), Expect = 8e-08
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 11/113 (9%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           L+ + +  GKGE P D       + V+YKG L++ ++     TR    G+P   S     
Sbjct: 109 LVYQVVEAGKGEAPKDSDT----VVVNYKGTLIDGKEFDNSYTR----GEP--LSFRLDG 158

Query: 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           V  G+   ++ +  G    +  PP+ AY K   P  +P  + + +++ELL  +
Sbjct: 159 VIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP-GIPPNSTLVFDVELLDVK 210

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 16/141 (11%)

Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHL 451
           DG +  AE+++   N  FK   +E A   Y + +                        + 
Sbjct: 4   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY---------------YG 48

Query: 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
           N +   L+      ++    + ++ +  ++KG YRR  + MALG+F  A RD+E ++KV 
Sbjct: 49  NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 108

Query: 512 KSSEPDATAALSKLKKQRQVK 532
                DA     +  K  + K
Sbjct: 109 PHD-KDAKMKYQECNKIVKQK 128

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 52.0 bits (124), Expect = 5e-08
 Identities = 15/126 (11%), Positives = 38/126 (30%), Gaps = 15/126 (11%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                 EG+ + A     + ++     +P+D             L  +    L   G+  
Sbjct: 3   WKNALSEGQLQQALELLIEAIK----ASPKDAS-----------LRSSFIELLCIDGDFE 47

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           ++ E   + +   P ++ G  +      A    ++  +       + ++ E   +     
Sbjct: 48  RADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFN 107

Query: 525 LKKQRQ 530
           L    Q
Sbjct: 108 LSMVSQ 113

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 48.7 bits (115), Expect = 2e-07
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 7/129 (5%)

Query: 273 RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEG 332
             +          P  D    VHY G L              +  +    +     V +G
Sbjct: 37  VFQRIARGSGKRAPAIDDKCEVHYTGRLR------DGTVFDSSRERGKPTTFRPNEVIKG 90

Query: 333 FEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDW-TGLSF 391
           +   ++LM  G+   +  P D AY        +P  + +++++EL+  +      T    
Sbjct: 91  WTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGGKGRTAEEV 150

Query: 392 DGIMDEAEK 400
           D I+ +AE+
Sbjct: 151 DEILRKAEE 159

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 18/166 (10%)

Query: 2   AVEDEDINPQKKKAPS---EDDKRRMKIV--PGSLMKAVMRPGGGDSTPSDGDQVAYHCT 56
           A  +E +N  +K+      E    +   V  P  L+   +  G G   P+  D+   H T
Sbjct: 2   ASHEERMNNYRKRVGRLFMEQKAAQPDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYT 61

Query: 57  VRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYG 116
            R  DG + +S+R                ++++ G  E +  M +G+     +   + YG
Sbjct: 62  GRLRDGTVFDSSRERG------KPTTFRPNEVIKGWTEALQLMREGDRWRLFIPYDLAYG 115

Query: 117 EDDCPVAAPSTFPKDEELHFEIEMIDF---AKAKIIADDFGVVKKV 159
                       P    L F++E+I      K +   +   +++K 
Sbjct: 116 VTG----GGGMIPPYSPLEFDVELISIKDGGKGRTAEEVDEILRKA 157

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 5e-07
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 16/133 (12%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           ++  +++  GN+    G  + A   Y + +     ++P +              + N +A
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAI----KLDPHNHVL-----------YSNRSA 45

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
              K G+ +K+ E   K +D  P   KG  R+  A   L  FEEA+R +E  +K + ++ 
Sbjct: 46  AYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN- 104

Query: 516 PDATAALSKLKKQ 528
           P     L  ++ +
Sbjct: 105 PQLKEGLQNMEAR 117

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 16/148 (10%)

Query: 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 466
            L+ EG     K  ++  L  F+ V                 +  N+      L    ++
Sbjct: 7   SLWNEGVLAADKKDWKGALDAFSAVQDPHSR-----------ICFNIGCMYTILKNMTEA 55

Query: 467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526
            +A  + ++ +       ++RGM Y    +++ A    + + +       +       L 
Sbjct: 56  EKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA---IKDLKEALIQLRGNQLIDYKILG 112

Query: 527 KQRQVKLKVRLENSLKGCLTRSLGKFLK 554
            Q ++     L N     +     ++ K
Sbjct: 113 LQFKLFACEVLYN--IAFMYAKKEEWKK 138

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 16/131 (12%), Positives = 38/131 (29%), Gaps = 2/131 (1%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL-LHLNVAACLLKLGEC 463
           G           A+  + + +    H+     + G ++       L +      L     
Sbjct: 43  GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 102

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAAL 522
            + I+     L       + LY     Y    E+++A+    +   +           A+
Sbjct: 103 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAM 162

Query: 523 SKLKKQRQVKL 533
             + KQ+  + 
Sbjct: 163 ECVWKQKLYEP 173

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 44.0 bits (103), Expect = 6e-06
 Identities = 16/120 (13%), Positives = 40/120 (33%), Gaps = 11/120 (9%)

Query: 47  DGDQVAYHCTVRTLDGVIVESTRSEY---------GGKGIPIRHVLGKSKILLGLLEGIP 97
            G ++      +   G + +++  E            +  P+  V+G+ +++ G  E + 
Sbjct: 4   KGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVL 63

Query: 98  TMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVK 157
            M  G+    K+  +  YG  +         P+D     + E  +            + +
Sbjct: 64  DMEVGDEKTVKIPAEKAYGNRN--EMLIQKIPRDAFKEADFEPEEGMVILAEGIPATITE 121

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 294 VHYKGMLLN---------EEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE 344
           V Y G L +         E  K       D + +PLEF  GEG + +GFE  V  M  G+
Sbjct: 10  VDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGD 69

Query: 345 IALVTCPPDYAYDK 358
              V  P + AY  
Sbjct: 70  EKTVKIPAEKAYGN 83

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 10/101 (9%), Positives = 31/101 (30%), Gaps = 5/101 (4%)

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANP-----AHVKGLYRRGMAYMALGEFEEAQRD 503
            +   A   +  G   ++       L+  P     + +      G      GE   +   
Sbjct: 14  FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLAL 73

Query: 504 FEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGC 544
            +   ++ +  +    A  S +++   +  +  L+ + +  
Sbjct: 74  MQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQ 114

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 14/148 (9%), Positives = 37/148 (25%), Gaps = 19/148 (12%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
               K    G    K+                      Q                +++  
Sbjct: 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCS----YICQH-------------CLVHLGD 160

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
                 +  ++           P++ +   +  +   + G+       +   + V     
Sbjct: 161 IARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF- 219

Query: 516 PDATAALSK-LKKQRQVKLKVRLENSLK 542
           P A+  L K L K  + + +V+ +  + 
Sbjct: 220 PAASTNLQKALSKALESRDEVKTKWGVS 247

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 22/148 (14%), Positives = 54/148 (36%), Gaps = 15/148 (10%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
            A        R    G+++ A A   + +   + + P++  +     G     H  +A  
Sbjct: 8   GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD---HAGFDAFCHAGLAEA 64

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKG-----------LYRRGMAYMALGEFEEAQRDFE 505
           L  L    +++ + +K L       +            +Y R +A   LG   EA  +F+
Sbjct: 65  LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 124

Query: 506 MMMKVDKSSEPDATAALSKLKKQRQVKL 533
            ++++ +  +   T    ++ +    ++
Sbjct: 125 KVVEMIEERK-GETPGKERMMEVAIDRI 151

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.8 bits (97), Expect = 6e-05
 Identities = 17/122 (13%), Positives = 30/122 (24%), Gaps = 7/122 (5%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLL------ 449
                 +  G      G+FE A       LR++      D  + +        L      
Sbjct: 9   GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVL 68

Query: 450 -HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
            H   A   +  G     I     +   +P       +   AY       +A   +  + 
Sbjct: 69  AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128

Query: 509 KV 510
             
Sbjct: 129 TT 130

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 11/103 (10%), Positives = 26/103 (25%)

Query: 409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE 468
            +    +  +        D N  +        +   +              L    +S +
Sbjct: 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263

Query: 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
              ++   N   +  +     A   L   +E  + F  +  VD
Sbjct: 264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 25/118 (21%)

Query: 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK---LGECRKSIEAC 470
            E+ + +          +  +                 N A  L+K   + + R  ++  
Sbjct: 18  LEILRQQVVSEGGPTATIQSR----------------FNYAWGLIKSTDVNDERLGVKIL 61

Query: 471 NKVLDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527
             +     +  +  LY   +    LGE+  A+R  + + +     E +     + LK 
Sbjct: 62  TDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----ERNNKQVGA-LKS 114

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 12/89 (13%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 427 DFNHVNP--QDDEEGKVFV----GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480
           ++  ++P  Q+D    V       K   ++    A L +     ++ +     ++ N A+
Sbjct: 17  EWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN 76

Query: 481 VKGLYRRGMAYMALGE-FEEAQRDFEMMM 508
               + R +   +L +   E       ++
Sbjct: 77  YTVWHFRRVLLKSLQKDLHEEMNYITAII 105

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 7e-04
 Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 15/138 (10%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G R  +EG    A   +E  ++     +P+  E               +     +  +  
Sbjct: 26  GLRRLQEGDLPNAVLLFEAAVQ----QDPKHME-----------AWQYLGTTQAENEQEL 70

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
            +I A  + L+  P +   L    +++       +A       ++   +     T A   
Sbjct: 71  LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 130

Query: 525 LKKQRQVKLKVRLENSLK 542
                    K  L + L 
Sbjct: 131 AGGAGLGPSKRILGSLLS 148

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 10/70 (14%), Positives = 24/70 (34%)

Query: 461 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA 520
               +                +  +  G  Y++LG+ + A   F++ +  +  +  +   
Sbjct: 189 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 248

Query: 521 ALSKLKKQRQ 530
           AL +L    Q
Sbjct: 249 ALLELSLLGQ 258

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 454 AACLLKLGECRKSIEACNKVLD----ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
           A  L    +    +    ++L      +    + LY RG+ Y +LG    A+ DF   +
Sbjct: 6   AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 12/98 (12%), Positives = 29/98 (29%), Gaps = 16/98 (16%)

Query: 45  PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEV 104
            ++GD      T   +D   + S       +   +   +G +  + G   G+  M   + 
Sbjct: 2   LANGDIAIIDFTG-IVDNKKLAS----ASAQNYEL--TIGSNSFIKGFETGLIAMKVNQK 54

Query: 105 SMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
               +     Y   +            + + FE+ +  
Sbjct: 55  KTLALTFPSDYHVKELQ---------SKPVTFEVVLKA 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	554
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.93
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.93
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.92
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.92
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.92
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.92
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.91
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.91
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.9
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.9
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.9
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.89
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.89
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.88
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.88
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.88
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.87
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.86
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.84
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.84
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.83
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.82
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.81
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.81
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.79
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.79
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.77
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.7
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.54
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.51
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.47
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.45
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.45
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.43
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.41
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.4
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.39
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.33
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.3
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.29
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.26
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.26
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.25
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.2
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.19
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.18
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.18
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.16
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.14
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.06
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.06
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.03
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.97
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.88
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.85
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.82
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.78
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.75
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.74
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.67
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.63
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.56
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.54
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.53
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.52
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.49
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.47
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.45
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.38
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.22
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.15
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.06
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.05
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.03
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.98
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.96
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.94
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.93
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.36
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.16
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.09
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.28
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	91.73
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	89.3
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	83.62

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=7.5e-26  Score=190.13  Aligned_cols=111  Identities=28%  Similarity=0.550  Sum_probs=105.2

Q ss_pred             cCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEE
Q 008780           26 IVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVS  105 (554)
Q Consensus        26 ~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~  105 (554)
                      .+++||+|+++++|+|..+|..||.|.+||++++.||++|++|+.    ++.|+.|.+|.+++++||+++|.+|++||++
T Consensus         7 ~~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~----~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~   82 (118)
T d1r9ha_           7 KKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRD----RGDQFSFNLGRGNVIKGWDLGVATMTKGEVA   82 (118)
T ss_dssp             TCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTTTSSCHHHHHHHTTCCBTCEE
T ss_pred             cCCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccc----cceeeeeeccCcceeeeeeeeeeeecCCceE
Confidence            457899999999999987799999999999999999999999997    7789999999999999999999999999999


Q ss_pred             EEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780          106 MFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (554)
Q Consensus       106 ~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~  144 (554)
                      +|+|||++|||+.+.+    +.|||+++|+|+|+|++|.
T Consensus        83 ~~~ipp~laYG~~g~~----~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          83 EFTIRSDYGYGDAGSP----PKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             EEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred             EEEECHHHhCCcCCCC----CccCcCCcEEEEEEEEEEe
Confidence            9999999999999975    6899999999999999985

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-25  Score=188.05  Aligned_cols=112  Identities=30%  Similarity=0.474  Sum_probs=105.5

Q ss_pred             cCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEE
Q 008780           26 IVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVS  105 (554)
Q Consensus        26 ~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~  105 (554)
                      ..++||+|+++++|.|...|..||.|.+||++++.||++|++|++    .+.|+.|.+|.+++++||+.+|.+|++|+++
T Consensus         8 ~~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~----~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~   83 (120)
T d1q1ca1           8 KQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLD----RKDKFSFDLGKGEVIKAWDIAIATMKVGEVC   83 (120)
T ss_dssp             SCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTT----SSSCEEEETTTTSSCHHHHHHHTTCCTTCEE
T ss_pred             CCCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEeccc----cccceeeecCCCceeeeeeeeeccccCCcEE
Confidence            346999999999999987799999999999999999999999997    7789999999999999999999999999999


Q ss_pred             EEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeec
Q 008780          106 MFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK  145 (554)
Q Consensus       106 ~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  145 (554)
                      +|+|||++|||..+.+    +.|||+++|+|+|+|++|+.
T Consensus        84 ~~~ip~~laYG~~g~~----~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          84 HITCKPEYAYGSAGSP----PKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             EEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEECHHHhCCCcCCC----CCCCcCCcEEEEEEEEEEeC
Confidence            9999999999999875    78999999999999999963

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.92  E-value=2.1e-24  Score=194.72  Aligned_cols=164  Identities=27%  Similarity=0.404  Sum_probs=148.7

Q ss_pred             CCCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCH
Q 008780          384 KDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC  463 (554)
Q Consensus       384 ~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~  463 (554)
                      ++.|.|+.+++++.+..+++.|+.+|+.|+|.+|+..|++|+.++........+.......+...+|+|+|.||+++++|
T Consensus         1 ~e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1           1 KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            36789999999999999999999999999999999999999998876665565666677777889999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 008780          464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLK  542 (554)
Q Consensus       464 ~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~  542 (554)
                      .+|+.+|+++|.++|++.++|+++|.++..+|+|++|+.+|+++++++|+| ..+...+..+....+ ..++++  +.|+
T Consensus        81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~~~~~~~e~~k--k~~~  157 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN-KAARLQIFMCQKKAKEHNERDR--RTYA  157 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred             ccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhHHHHHH--HHHH
Confidence            999999999999999999999999999999999999999999999999998 678888998887777 556666  8999


Q ss_pred             hhcccccc
Q 008780          543 GCLTRSLG  550 (554)
Q Consensus       543 ~~f~~~~~  550 (554)
                      +||.+..+
T Consensus       158 ~~f~~~~~  165 (168)
T d1kt1a1         158 NMFKKFAE  165 (168)
T ss_dssp             HHHHHHHT
T ss_pred             HHHhhhhh
Confidence            99987654

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.8e-25  Score=183.56  Aligned_cols=107  Identities=26%  Similarity=0.553  Sum_probs=101.8

Q ss_pred             CeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEE
Q 008780           30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM  109 (554)
Q Consensus        30 g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~i  109 (554)
                      ||+|+++++|+|...|..||.|.+||++++.||++|++|++    .+.|+.|.+|.+++++||+.+|.+|++|++++|+|
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~----~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~i   76 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTI   76 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeec----cceeeeEeeCcchhheeehhhhcCccCCCEEEEEE
Confidence            79999999999987799999999999999999999999997    77899999999999999999999999999999999


Q ss_pred             eCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780          110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (554)
Q Consensus       110 p~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~  144 (554)
                      ||++|||..+.+    +.||||++|+|+|+|++++
T Consensus        77 p~~laYG~~g~~----~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          77 SPDYAYGATGHP----GIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             CGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEC
T ss_pred             CHHHhCCCCCCC----CCCCcCCeEEEEEEEEEEC
Confidence            999999999875    6799999999999999974

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=4.8e-25  Score=184.23  Aligned_cols=112  Identities=25%  Similarity=0.513  Sum_probs=105.6

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcE
Q 008780           25 KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEV  104 (554)
Q Consensus        25 ~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~  104 (554)
                      +.+++||+++++++|+|...|+.||.|.+||++++.||++|+++++    ...|+.|.++.+++++||++||.+|++|++
T Consensus         2 ~~~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~~----~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~   77 (113)
T d1yata_           2 EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVD----RGSPFQCNIGVGQVIKGWDVGIPKLSVGEK   77 (113)
T ss_dssp             EECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTT----TTCCEEEETTSSSSCHHHHHHGGGCCTTCE
T ss_pred             cCccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEecccc----CCceEeeeeccCceeeehhhhcccccCCCE
Confidence            4568999999999999987799999999999999999999999997    778999999999999999999999999999


Q ss_pred             EEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780          105 SMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (554)
Q Consensus       105 ~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~  144 (554)
                      ++|+|||++|||..|.+    +.||++++|+|+|+|++|.
T Consensus        78 ~~~~iP~~laYG~~g~~----~~IP~~s~Lif~ieLl~I~  113 (113)
T d1yata_          78 ARLTIPGPYAYGPRGFP----GLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             EEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEC
T ss_pred             EEEEechHHeecCcCCC----CccCcCCeEEEEEEEEEeC
Confidence            99999999999999975    6799999999999999873

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.92  E-value=8.2e-26  Score=188.04  Aligned_cols=110  Identities=30%  Similarity=0.535  Sum_probs=85.5

Q ss_pred             CCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEE
Q 008780           27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM  106 (554)
Q Consensus        27 ~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~  106 (554)
                      +++|++|+++++|.|...|..||.|.+||++++.||++|++|++    .+.|+.|.+|.+++++||+.+|.+|++||+++
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~~----~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~   77 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHD----RNEPFVFSIGKGQVIKAWDIGVATMKKGEICH   77 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC----------------CEEEETTSSSSCHHHHHSTTTCCTTCCEE
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEEe----cceeeeeecCCCcEEeeeeeeehhccCCcEEE
Confidence            57999999999999987799999999999999999999999997    78899999999999999999999999999999


Q ss_pred             EEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780          107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (554)
Q Consensus       107 ~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~  144 (554)
                      |+|||++|||+.|.+    +.|||+++|+|+|+|++|+
T Consensus        78 ~~ip~~layG~~g~~----~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          78 LLCKPEYAYGATGSL----PKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             EEC----CCCTTTCT----TTSCTTCCCEEEEEEEEEE
T ss_pred             EEECHHHhCCCCCCC----CcCCcCCeEEEEEEEEEEC
Confidence            999999999999875    6899999999999999984

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.6e-23  Score=189.13  Aligned_cols=159  Identities=26%  Similarity=0.416  Sum_probs=144.4

Q ss_pred             CCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHH
Q 008780          387 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  466 (554)
Q Consensus       387 ~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A  466 (554)
                      |+|+.+++++.+..++++|+.+|+.++|++|+..|++||.++........++......+...++.|+|.||+++++|.+|
T Consensus         2 ~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A   81 (170)
T d1p5qa1           2 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAA   81 (170)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccc
Confidence            78999999999999999999999999999999999999998766555555666777788889999999999999999999


Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhc
Q 008780          467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKGCL  545 (554)
Q Consensus       467 ~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f  545 (554)
                      +.+|+++|.++|+++++|+++|.++..+|+|++|+.+|++|++++|+| ..+...+..+..+.. ..++++  .+|++||
T Consensus        82 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~~~~~~~~~e~--~~~~~~f  158 (170)
T d1p5qa1          82 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLAREK--KLYANMF  158 (170)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred             cchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            999999999999999999999999999999999999999999999998 788888998888777 555555  7899999


Q ss_pred             ccc
Q 008780          546 TRS  548 (554)
Q Consensus       546 ~~~  548 (554)
                      .+.
T Consensus       159 ~~~  161 (170)
T d1p5qa1         159 ERL  161 (170)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=2.7e-24  Score=198.85  Aligned_cols=113  Identities=26%  Similarity=0.439  Sum_probs=105.1

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (554)
Q Consensus        22 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~  101 (554)
                      ...+++++||+|+++++|+|.. |..||.|.+||++++.||++|++|+.    ++.|+.|.+  +++++||+++|.+|++
T Consensus        91 ~~v~~~~sGl~y~v~~~G~G~~-p~~~d~v~v~y~g~l~dg~~f~~s~~----~~~p~~~~~--~~~i~G~~e~l~~m~~  163 (204)
T d1fd9a_          91 PGVVVLPSGLQYKVINSGNGVK-PGKSDTVTVEYTGRLIDGTVFDSTEK----TGKPATFQV--SQVIPGWTEALQLMPA  163 (204)
T ss_dssp             TTEEECTTSCEEEEEECCCSCC-CCTTCEEEEEEEEEETTSCEEEEHHH----HCSCEEEEG--GGSCHHHHHHHTTCCT
T ss_pred             CceEEecCccEEEEeecCCCcc-cCCCCEEEEEEEEEECCCCEeccccc----CCCCceecC--CccchhHHHHhcCCCC
Confidence            3556789999999999999987 99999999999999999999999987    778998887  5799999999999999


Q ss_pred             CcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeec
Q 008780          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK  145 (554)
Q Consensus       102 Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  145 (554)
                      |++++|+|||++|||..|.+    +.||||++|+|+|+|++|.+
T Consensus       164 G~~~~~~iP~~laYG~~g~~----~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         164 GSTWEIYVPSGLAYGPRSVG----GPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             TCEEEEEECGGGTTTTCCCS----SSCCTTCCEEEEEEEEEEEC
T ss_pred             CCEEEEEEChHHCcCCCCCC----CCcCcCCcEEEEEEEEEEEc
Confidence            99999999999999999985    67999999999999999974

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=4.9e-24  Score=197.91  Aligned_cols=112  Identities=25%  Similarity=0.533  Sum_probs=104.2

Q ss_pred             ccccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCC
Q 008780           21 KRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML  100 (554)
Q Consensus        21 ~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~  100 (554)
                      +...+.+++||+|+++++|+|.. |..||.|.+||++++.||++|++|++    ++.|+.|.+  +++|+||+++|.+|+
T Consensus        99 ~~~v~~~~sGl~y~v~~~G~G~~-p~~gd~v~v~y~g~l~dG~~fd~s~~----~~~p~~~~~--~~vi~g~~e~l~~m~  171 (210)
T d1q6ha_          99 EKGVKTSSTGLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRL--DGVIPGWTEGLKNIK  171 (210)
T ss_dssp             STTEEECTTSCEEEEEECCSSCC-CCTTCEEEEEEEEEETTSCEEEEGGG----GTSCEEEEG--GGSCHHHHHHGGGSC
T ss_pred             cCceEEccCceEEEEeeCCCCCC-CCCCceEEEEEEEEEcCCCEEeeccc----CCCcceecc--CccchhHHHHHhhcc
Confidence            34567789999999999999987 99999999999999999999999997    788999999  469999999999999


Q ss_pred             CCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780          101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (554)
Q Consensus       101 ~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~  144 (554)
                      +|++++|+|||++|||+.|.+     .||||++|+|+|+|++|+
T Consensus       172 ~G~k~~~~iP~~laYG~~g~~-----~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         172 KGGKIKLVIPPELAYGKAGVP-----GIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             TTCEEEEEECGGGTTTTTCBT-----TBCTTCCEEEEEEEEEEC
T ss_pred             CCCEEEEEECHHHCcCCCCCC-----CCCcCCcEEEEEEEEEEC
Confidence            999999999999999999973     599999999999999984

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-23  Score=176.64  Aligned_cols=112  Identities=27%  Similarity=0.501  Sum_probs=100.6

Q ss_pred             CeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCC---CCCCccEEEecCCCccchhHHhhcCCCCCCcEEE
Q 008780           30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEY---GGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM  106 (554)
Q Consensus        30 g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~---~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~  106 (554)
                      .+.++|+++|+|...|+.||.|.+||++++.||++||+|++..   .....|+.|.+|.+++++||+.+|.+|++||++.
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            4789999999998779999999999999999999999997532   2245799999999999999999999999999999


Q ss_pred             EEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780          107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (554)
Q Consensus       107 ~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~  144 (554)
                      |+|||++|||..+.+   +..|||+++|+|+|+|++|.
T Consensus        82 ~~ip~~~ayG~~g~~---~~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          82 LEIEPEWAYGKKGQP---DAKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             EEECGGGTTTTTCBG---GGTBCTTCCEEEEEEEEEEC
T ss_pred             EEECHHHhCCccCCC---CCCcCcCCeEEEEEEEEEEC
Confidence            999999999999874   14699999999999999973

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-23  Score=175.92  Aligned_cols=114  Identities=32%  Similarity=0.618  Sum_probs=103.6

Q ss_pred             eccc--CCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHh
Q 008780          261 RDML--GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVR  338 (554)
Q Consensus       261 ~d~~--~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~  338 (554)
                      .|++  +|++|+|+++++|.|..   +|..++.|+|||++++.|  |++| +++++ ++.|+.|.+|.+.+++||+.+|.
T Consensus         3 ~d~t~~~d~gv~~~i~~~G~G~~---~P~~gd~V~v~y~~~l~d--G~~f-dss~~-~~~p~~f~~g~~~~i~G~~~~l~   75 (120)
T d1q1ca1           3 VDISPKQDEGVLKVIKREGTGTE---MPMIGDRVFVHYTGWLLD--GTKF-DSSLD-RKDKFSFDLGKGEVIKAWDIAIA   75 (120)
T ss_dssp             EECCSSCSSSEEEEEEECCSSSC---CCCTTCEEEEEEEEEETT--SCEE-EESTT-SSSCEEEETTTTSSCHHHHHHHT
T ss_pred             eeccCCCCCCEEEEEEEcccCCc---CCCCCCEEEEEEEEEEcC--CCEE-Eeccc-cccceeeecCCCceeeeeeeeec
Confidence            4666  58999999999999964   357899999999999987  8988 55555 57899999999999999999999


Q ss_pred             cCCcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccc
Q 008780          339 LMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  381 (554)
Q Consensus       339 ~M~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~  381 (554)
                      +|++||++.|.|||++|||..+.++.|||+++|+|+|+|++++
T Consensus        76 ~M~~Ge~~~~~ip~~laYG~~g~~~~IPp~s~LifeIeLl~v~  118 (120)
T d1q1ca1          76 TMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK  118 (120)
T ss_dssp             TCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             cccCCcEEEEEECHHHhCCCcCCCCCCCcCCcEEEEEEEEEEe
Confidence            9999999999999999999999988999999999999999885

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.90  E-value=1.3e-23  Score=176.26  Aligned_cols=113  Identities=34%  Similarity=0.594  Sum_probs=102.4

Q ss_pred             ccc--CCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHhc
Q 008780          262 DML--GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL  339 (554)
Q Consensus       262 d~~--~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~~  339 (554)
                      |++  +|++|+|+++++|+|..   .|..++.|++||++++.|  |++|++|. + +++|+.|.+|.+.+++||+.+|.+
T Consensus         3 d~t~~~d~Gl~~~il~~G~G~~---~p~~gd~V~v~y~~~l~d--G~v~dss~-~-~~~p~~f~~g~~~vi~G~~~~l~~   75 (118)
T d1r9ha_           3 DITPKKDGGVLKLIKKEGQGVV---KPTTGTTVKVHYVGTLEN--GTKFDSSR-D-RGDQFSFNLGRGNVIKGWDLGVAT   75 (118)
T ss_dssp             ECSTTCCSSEEEEEEECCBSSC---CCCTTCEEEEEEEEEETT--SCEEEEHH-H-HTSCEEEETTTTSSCHHHHHHHTT
T ss_pred             cccccCCCCEEEEEEECcCCCC---CCCCCCEEEEEEEEEEcC--CCEEEEcc-c-cceeeeeeccCcceeeeeeeeeee
Confidence            665  78999999999999974   257899999999999977  89985554 3 578999999999999999999999


Q ss_pred             CCcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccc
Q 008780          340 MLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  381 (554)
Q Consensus       340 M~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~  381 (554)
                      |++||++.|.|||++|||+.|.++.|||+++|.|+|+|+++.
T Consensus        76 M~~Ge~~~~~ipp~laYG~~g~~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          76 MTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             CCBTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             ecCCceEEEEECHHHhCCcCCCCCccCcCCcEEEEEEEEEEe
Confidence            999999999999999999999988899999999999999874

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.89  E-value=1.5e-23  Score=185.52  Aligned_cols=115  Identities=23%  Similarity=0.412  Sum_probs=103.7

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCC
Q 008780           23 RMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKG  102 (554)
Q Consensus        23 ~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G  102 (554)
                      ...++|+||+|+++++|.|...|..||.|.+||++++.||++|+++++    ...|+  .++.+.+++||+.+|.+|++|
T Consensus        28 ~~~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~----~~~p~--~~~~~~~i~G~~e~l~~M~~G  101 (160)
T d1jvwa_          28 DAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE----RGKPT--TFRPNEVIKGWTEALQLMREG  101 (160)
T ss_dssp             TEEECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHH----HTSCE--EECGGGSCHHHHHHHTTCCTT
T ss_pred             CCEECCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeecc----ccCcc--ccCccccchhHHHHhcCcccc
Confidence            356789999999999999987799999999999999999999999986    55665  556689999999999999999


Q ss_pred             cEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeeccc
Q 008780          103 EVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK  147 (554)
Q Consensus       103 e~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~  147 (554)
                      ++++|+|||++|||..|.+    +.|||+++|+|+|+|++|.+..
T Consensus       102 e~~~v~iPp~laYG~~g~~----~~IPp~s~LifeIeLl~i~~~~  142 (160)
T d1jvwa_         102 DRWRLFIPYDLAYGVTGGG----GMIPPYSPLEFDVELISIKDGG  142 (160)
T ss_dssp             CEEEEEECGGGTTTTTCSS----SSSCTTCCEEEEEEEEEEGGGC
T ss_pred             ceeEEEeCHHHCcCCCCCC----CCcCcCCcEEEEEEEEEEecCC
Confidence            9999999999999998865    6799999999999999997543

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=1.6e-23  Score=178.46  Aligned_cols=115  Identities=23%  Similarity=0.428  Sum_probs=103.1

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcC------
Q 008780           24 MKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIP------   97 (554)
Q Consensus        24 ~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~------   97 (554)
                      ..++|+||+|+++++|+|.. |+.||.|.+||++++.||++|++|+.    .+.|+.|.+|.+.+++||+.+|.      
T Consensus         3 ~~~~psGl~y~~~~~G~G~~-p~~gd~V~v~y~g~l~~G~~fdss~~----~~~p~~~~~g~~~~i~g~~~~i~g~~~l~   77 (125)
T d1u79a_           3 FSVSPSGLAFCDKVVGYGPE-AVKGQLIKAHYVGKLENGKVFDSSYN----RGKPLTFRIGVGEVIKGWDQGILGSDGIP   77 (125)
T ss_dssp             CEECTTSCEEEEEECCSSCB-CCTTCEEEEEEEEECTTSCEEEEHHH----HTSCEEEETTSSSSCHHHHHHHHCBTTBC
T ss_pred             cEECCCCCEEEEEEeccCCC-CCCCCEEEEEEEeeecCCcEEecccc----cCcceeEecCccccccchhhhccchhhcc
Confidence            35789999999999999987 99999999999999999999999997    67899999999999999988774      


Q ss_pred             CCCCCcEEEEEEeCCCccCCCCCCCC-CCCCCCCCCceEEEEEEEee
Q 008780           98 TMLKGEVSMFKMKPQMHYGEDDCPVA-APSTFPKDEELHFEIEMIDF  143 (554)
Q Consensus        98 ~m~~Ge~~~~~ip~~~~yg~~~~~~~-~~~~ip~~~~l~~~v~l~~~  143 (554)
                      .|++|++++|+|||++|||++|.+.. .++.|||+++|+|+|+|+++
T Consensus        78 ~M~~G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          78 PMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             CCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             cccCCCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            59999999999999999999885311 12469999999999999986

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.88  E-value=6.5e-22  Score=175.24  Aligned_cols=146  Identities=25%  Similarity=0.316  Sum_probs=129.6

Q ss_pred             CCCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChh-HHHHHhhhHHHHHHHHHHHHHHccC
Q 008780          384 KDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE-EGKVFVGKRNLLHLNVAACLLKLGE  462 (554)
Q Consensus       384 ~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~e-e~~~~~~~~~~~~~nla~~~~kl~~  462 (554)
                      ++.|+|+.+++++.|..+++.|+.+|+.|+|.+|+..|++|++++......++. .......+...+++|+|.||+++++
T Consensus         3 ~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~   82 (153)
T d2fbna1           3 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD   82 (153)
T ss_dssp             CSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc
Confidence            467889999999999999999999999999999999999999976654443332 2334456667899999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       463 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      |.+|+.+|++||+++|.++++||++|.+|..+|+|++|+.+|+++++++|+| ..+...+..+.++++
T Consensus        83 ~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          83 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN-LDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998 678888888877665

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.5e-22  Score=167.04  Aligned_cols=105  Identities=27%  Similarity=0.422  Sum_probs=97.8

Q ss_pred             CeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCc
Q 008780          154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY  232 (554)
Q Consensus       154 gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~  232 (554)
                      |+.++++++|.|...|+.||.|++||++++.||++|+++. .+.|++|.+|.++++|||+++|.+|++||+++|+|||++
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~l   80 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeeccceeeeEeeCcchhheeehhhhcCccCCCEEEEEECHHH
Confidence            6889999999997779999999999999999999999886 578999999999999999999999999999999999999


Q ss_pred             cCCCCC-CCCCCCcceEEEEEeeeeee
Q 008780          233 LTPSPL-MPVVEGCEEVHFEVELVHLI  258 (554)
Q Consensus       233 ~~g~~~-~~~ip~~~~l~~~v~l~~~~  258 (554)
                      +||+.+ ++.||++++|+|+|+|+++.
T Consensus        81 aYG~~g~~~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          81 AYGATGHPGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             hCCCCCCCCCCCcCCeEEEEEEEEEEC
Confidence            999864 46689999999999999873

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.88  E-value=2.2e-23  Score=173.19  Aligned_cols=110  Identities=36%  Similarity=0.611  Sum_probs=84.1

Q ss_pred             CCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHhcCCcCc
Q 008780          265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE  344 (554)
Q Consensus       265 ~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~~M~~GE  344 (554)
                      .|++|+|+++++|.|..   +|..++.|+|||++++.|  |++| |++++ +++|+.|.+|.+.+++||+.+|.+|++||
T Consensus         2 ~d~Gi~~~i~~~G~g~~---~P~~gd~V~v~y~~~l~d--G~~~-dss~~-~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge   74 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEE---TPMIGDRVYVHYNGKLAN--GKKF-DSSHD-RNEPFVFSIGKGQVIKAWDIGVATMKKGE   74 (111)
T ss_dssp             CSCSCEEEC----CCSC---CCCTTCEEEEECCCCSCC----------------CEEEETTSSSSCHHHHHSTTTCCTTC
T ss_pred             CCCCeEEEEEEcccCCc---CCCCCCEEEEEEEEEECC--CCEE-EEEEe-cceeeeeecCCCcEEeeeeeeehhccCCc
Confidence            47999999999999974   368999999999999877  8887 44444 57899999999999999999999999999


Q ss_pred             EEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccc
Q 008780          345 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  381 (554)
Q Consensus       345 ~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~  381 (554)
                      +++++|||++|||+.|.++.|||+++|+|+|+|++++
T Consensus        75 ~~~~~ip~~layG~~g~~~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          75 ICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             CEEEEC----CCCTTTCTTTSCTTCCCEEEEEEEEEE
T ss_pred             EEEEEECHHHhCCCCCCCCcCCcCCeEEEEEEEEEEC
Confidence            9999999999999999888999999999999999874

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.7e-22  Score=166.62  Aligned_cols=104  Identities=23%  Similarity=0.379  Sum_probs=96.3

Q ss_pred             CeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC--------CCccEEEEeCCCCccchHHHHhccCCcCcEEE
Q 008780          154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR--------EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAV  225 (554)
Q Consensus       154 gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~--------~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~  225 (554)
                      .+.|+|+++|.|...|+.||.|+|||++++.||++|||+.        ..+|+.|.+|.++++|||+++|.+|++||+++
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            5789999999997789999999999999999999999873        34799999999999999999999999999999


Q ss_pred             EEEeCCccCCCCCC--CCCCCcceEEEEEeeeee
Q 008780          226 IYVTSQYLTPSPLM--PVVEGCEEVHFEVELVHL  257 (554)
Q Consensus       226 ~~v~~~~~~g~~~~--~~ip~~~~l~~~v~l~~~  257 (554)
                      ++|||+++||+.+.  ..||++++|+|+|+|+++
T Consensus        82 ~~ip~~~ayG~~g~~~~~Ipp~s~L~feieLl~v  115 (116)
T d1pbka_          82 LEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI  115 (116)
T ss_dssp             EEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             EEECHHHhCCccCCCCCCcCcCCeEEEEEEEEEE
Confidence            99999999998654  469999999999999987

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=5.3e-22  Score=165.48  Aligned_cols=109  Identities=32%  Similarity=0.552  Sum_probs=99.3

Q ss_pred             CCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHhcCCcCc
Q 008780          265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE  344 (554)
Q Consensus       265 ~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~~M~~GE  344 (554)
                      -|++|+++++++|.|..   +|..++.|.+||++++.|  |++| +++++ ++.|+.|.+|.+.+++||+.+|..|++||
T Consensus         4 ~d~gl~~~~l~~G~G~~---~P~~gd~V~v~y~~~~~d--G~~~-ds~~~-~~~~~~~~~~~~~~i~G~~~~l~~M~~G~   76 (113)
T d1yata_           4 IEGNVKIDRISPGDGAT---FPKTGDLVTIHYTGTLEN--GQKF-DSSVD-RGSPFQCNIGVGQVIKGWDVGIPKLSVGE   76 (113)
T ss_dssp             CGGGCEEEEEECCCSSC---CCCTTCEEEEEEEEEETT--SCEE-EESTT-TTCCEEEETTSSSSCHHHHHHGGGCCTTC
T ss_pred             ccCCcEEEEEECccCCc---CCCCCCEEEEEEEEEEec--CcEE-ecccc-CCceEeeeeccCceeeehhhhcccccCCC
Confidence            37899999999999974   358899999999999987  8887 45544 57899999999999999999999999999


Q ss_pred             EEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEccc
Q 008780          345 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF  380 (554)
Q Consensus       345 ~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~  380 (554)
                      ++.+.|||++|||+.|.++.||++++|+|+|+|+++
T Consensus        77 ~~~~~iP~~laYG~~g~~~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          77 KARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             EEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             EEEEEechHHeecCcCCCCccCcCCeEEEEEEEEEe
Confidence            999999999999999998889999999999999976

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.86  E-value=3.3e-21  Score=161.59  Aligned_cols=109  Identities=24%  Similarity=0.489  Sum_probs=94.7

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCC---CccchhHHhhcCCCCC
Q 008780           25 KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGK---SKILLGLLEGIPTMLK  101 (554)
Q Consensus        25 ~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~---~~~~~g~~~~l~~m~~  101 (554)
                      .+.++||+|+++++|+|..+|+.||.|.+||++++ +|++|+++         +..|.++.   ..+++||+.+|.+|++
T Consensus         4 ~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~---------~~~~~~~~~~~~~vi~G~~~~l~~M~~   73 (115)
T d1kt1a3           4 LLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR---------DVAFTVGEGEDHDIPIGIDKALEKMQR   73 (115)
T ss_dssp             TTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE---------EEEEETTCGGGGTCCHHHHHHHTTCCT
T ss_pred             cccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc---------ccCceeeeccccccCchhHhhhccchh
Confidence            46799999999999999767999999999999995 88888754         34555654   3589999999999999


Q ss_pred             CcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeecc
Q 008780          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA  146 (554)
Q Consensus       102 Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~  146 (554)
                      ||+++|+|||++|||..+.+   +..|||+++|+|+|+|+++.++
T Consensus        74 Ge~~~v~ip~~~ayG~~g~~---~~~Ipp~a~l~f~ieLl~~~ka  115 (115)
T d1kt1a3          74 EEQCILHLGPRYGFGEAGKP---KFGIEPNAELIYEVTLKSFEKA  115 (115)
T ss_dssp             TCEEEEEECGGGSSCTTCBT---TTTBCTTCCEEEEEEEEEEECC
T ss_pred             hceeEEEeCHHHCcCCCCCC---CCCcCcCCeEEEEEEEEEEEeC
Confidence            99999999999999999875   2479999999999999999753

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.84  E-value=5.2e-21  Score=160.35  Aligned_cols=109  Identities=28%  Similarity=0.526  Sum_probs=95.0

Q ss_pred             ecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCC---CchHHHHHHH
Q 008780          261 RDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG---LVPEGFEMCV  337 (554)
Q Consensus       261 ~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~---~v~~g~~~~l  337 (554)
                      +|+++||+|+|+|+++|.|..   .|..++.|+|||++++ +  |++|++       ++..|.++.+   .+|+||+.+|
T Consensus         2 e~~~~D~gi~k~il~~G~G~~---~p~~gd~V~v~y~g~~-~--g~~~~~-------~~~~~~~~~~~~~~vi~G~~~~l   68 (115)
T d1kt1a3           2 EDLLEDGGIIRRTKRRGEGYS---NPNEGARVQIHLEGRC-G--GRVFDC-------RDVAFTVGEGEDHDIPIGIDKAL   68 (115)
T ss_dssp             EETTSSSSEEEEEEECCCCSS---CCCTTCEEEEEEEEEE-T--TEEEEE-------EEEEEETTCGGGGTCCHHHHHHH
T ss_pred             CccccCCCEEEEEEEeecCCC---CCCCCCEEEEEEEEEe-C--Cccccc-------cccCceeeeccccccCchhHhhh
Confidence            689999999999999999963   3588999999999996 3  677633       2467777654   5899999999


Q ss_pred             hcCCcCcEEEEEeCCCCccccCCCCC-CCCCCCeEEEEEEEccccc
Q 008780          338 RLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK  382 (554)
Q Consensus       338 ~~M~~GE~~~~~i~~~~~yg~~g~~~-~ip~~~~l~~~ieL~~~~~  382 (554)
                      .+|++||++.|+|||++|||..+.++ .|||+++|+|+|+|+++++
T Consensus        69 ~~M~~Ge~~~v~ip~~~ayG~~g~~~~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          69 EKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             TTCCTTCEEEEEECGGGSSCTTCBTTTTBCTTCCEEEEEEEEEEEC
T ss_pred             ccchhhceeEEEeCHHHCcCCCCCCCCCcCcCCeEEEEEEEEEEEe
Confidence            99999999999999999999999876 6999999999999999875

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=7.9e-21  Score=176.03  Aligned_cols=106  Identities=23%  Similarity=0.350  Sum_probs=99.6

Q ss_pred             cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEE
Q 008780          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (554)
Q Consensus       150 ~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v  228 (554)
                      ..+.|+.++++++|.| +.|..||.|+|||++++.||++|+++. ++.|+.|.+|  ++||||+++|.+|++|++++++|
T Consensus       104 ~~~sGl~y~v~~~G~G-~~p~~gd~v~v~y~g~l~dG~~fd~s~~~~~p~~~~~~--~vi~g~~e~l~~m~~G~k~~~~i  180 (210)
T d1q6ha_         104 TSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVI  180 (210)
T ss_dssp             ECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEEE
T ss_pred             EccCceEEEEeeCCCC-CCCCCCceEEEEEEEEEcCCCEEeecccCCCcceeccC--ccchhHHHHHhhccCCCEEEEEE
Confidence            3567999999999999 899999999999999999999999986 5899999996  79999999999999999999999


Q ss_pred             eCCccCCCCCCCCCCCcceEEEEEeeeeee
Q 008780          229 TSQYLTPSPLMPVVEGCEEVHFEVELVHLI  258 (554)
Q Consensus       229 ~~~~~~g~~~~~~ip~~~~l~~~v~l~~~~  258 (554)
                      ||+++||+.+.+.||||++|+|+|+|+++.
T Consensus       181 P~~laYG~~g~~~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         181 PPELAYGKAGVPGIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             CGGGTTTTTCBTTBCTTCCEEEEEEEEEEC
T ss_pred             CHHHCcCCCCCCCCCcCCcEEEEEEEEEEC
Confidence            999999998888899999999999999873

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.83  E-value=1.2e-20  Score=174.11  Aligned_cols=107  Identities=23%  Similarity=0.266  Sum_probs=98.7

Q ss_pred             cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEE
Q 008780          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (554)
Q Consensus       150 ~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v  228 (554)
                      ..+.|+.+.++++|.| ..|..||.|.|||++++.||++|+++. ++.|++|.+|  ++||||+++|.+|++|++++++|
T Consensus        95 ~~~sGl~y~v~~~G~G-~~p~~~d~v~v~y~g~l~dg~~f~~s~~~~~p~~~~~~--~~i~G~~e~l~~m~~G~~~~~~i  171 (204)
T d1fd9a_          95 VLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIYV  171 (204)
T ss_dssp             ECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             EecCccEEEEeecCCC-cccCCCCEEEEEEEEEECCCCEecccccCCCCceecCC--ccchhHHHHhcCCCCCCEEEEEE
Confidence            4678999999999999 889999999999999999999999885 6789988876  79999999999999999999999


Q ss_pred             eCCccCCCCC-CCCCCCcceEEEEEeeeeeee
Q 008780          229 TSQYLTPSPL-MPVVEGCEEVHFEVELVHLIQ  259 (554)
Q Consensus       229 ~~~~~~g~~~-~~~ip~~~~l~~~v~l~~~~~  259 (554)
                      ||+++||+.+ ++.||||++|+|+|+|+++.+
T Consensus       172 P~~laYG~~g~~~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         172 PSGLAYGPRSVGGPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             CGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             ChHHCcCCCCCCCCcCcCCcEEEEEEEEEEEc
Confidence            9999999865 567999999999999999964

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.3e-20  Score=155.08  Aligned_cols=109  Identities=26%  Similarity=0.433  Sum_probs=92.0

Q ss_pred             cCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCC---CccchhHHhhcCCCCCC
Q 008780           26 IVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGK---SKILLGLLEGIPTMLKG  102 (554)
Q Consensus        26 ~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~---~~~~~g~~~~l~~m~~G  102 (554)
                      ..++||+|+|+++|.|..+|..||.|.+||++++.+|+ |+++.         ..+..+.   .++++||+.+|.+|++|
T Consensus         5 ~~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~-~~~~~---------~~~~~~~~~~~~~i~Gl~~~l~~M~~G   74 (117)
T d1q1ca2           5 EEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQRE---------LRFEIGEGENLDLPYGLERAIQRMEKG   74 (117)
T ss_dssp             TCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEE-EEEEE---------EEEETTCGGGGTCCHHHHHHHTTCCTT
T ss_pred             cCCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCc-Eeecc---------ccceeeecceeeeCcHHHHhhhcchhh
Confidence            35799999999999998779999999999999987775 44332         3344433   36899999999999999


Q ss_pred             cEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeeccc
Q 008780          103 EVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK  147 (554)
Q Consensus       103 e~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~  147 (554)
                      ++++|+|||++|||..|.+   +..|||+++|+|+|+|+++.+..
T Consensus        75 e~~~i~ip~~~ayG~~g~~---~~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          75 EHSIVYLKPSYAFGSVGKE---KFQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             CEEEEEECGGGTTTTTCBG---GGTBCTTCCEEEEEEEEEEECCC
T ss_pred             CeEEEEECHHHhCcccCCC---CCccCcCCeEEEEEEEEEEEeCC
Confidence            9999999999999999875   24799999999999999997643

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.81  E-value=5e-20  Score=162.64  Aligned_cols=115  Identities=25%  Similarity=0.361  Sum_probs=99.1

Q ss_pred             cCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHhcCCcC
Q 008780          264 LGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG  343 (554)
Q Consensus       264 ~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~~M~~G  343 (554)
                      +.+.+|+++++++|.|..   +|..+++|+|||+|++.|  |++|+++. + .+.|+  .++.+.+|+||+.+|..|++|
T Consensus        31 ~~~sGl~y~il~~G~G~~---~P~~gd~V~v~Y~g~l~d--G~~fds~~-~-~~~p~--~~~~~~~i~G~~e~l~~M~~G  101 (160)
T d1jvwa_          31 KLPSGLVFQRIARGSGKR---APAIDDKCEVHYTGRLRD--GTVFDSSR-E-RGKPT--TFRPNEVIKGWTEALQLMREG  101 (160)
T ss_dssp             ECTTSCEEEEEECCCCSB---CCCTTCCEEEEEEEECTT--SCEEEEHH-H-HTSCE--EECGGGSCHHHHHHHTTCCTT
T ss_pred             ECCCCCEEEEEECccccc---CCCCCcceEEEEEEEEcc--CCeeeeec-c-ccCcc--ccCccccchhHHHHhcCcccc
Confidence            457789999999999974   357899999999999877  99986554 2 34564  556678999999999999999


Q ss_pred             cEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccccCCCCC
Q 008780          344 EIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWT  387 (554)
Q Consensus       344 E~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~~~~  387 (554)
                      |++.|+|||++|||..|.++.|||+++|+|+|+|+++.++..+.
T Consensus       102 e~~~v~iPp~laYG~~g~~~~IPp~s~LifeIeLl~i~~~~~~~  145 (160)
T d1jvwa_         102 DRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGGKGR  145 (160)
T ss_dssp             CEEEEEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGGCCSC
T ss_pred             ceeEEEeCHHHCcCCCCCCCCcCcCCcEEEEEEEEEEecCCCCC
Confidence            99999999999999999888899999999999999998766543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=3.3e-19  Score=160.22  Aligned_cols=147  Identities=28%  Similarity=0.471  Sum_probs=125.2

Q ss_pred             CChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC-CCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHH
Q 008780          389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  467 (554)
Q Consensus       389 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~-p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~  467 (554)
                      .+.+..+..+..++..|+.+++.|+|..|+..|++||.++.... .........+......+++|+|.||.++++|.+|+
T Consensus        18 ~~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai   97 (169)
T d1ihga1          18 KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAV   97 (169)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhh
Confidence            45677888899999999999999999999999999998654321 12222333455667889999999999999999999


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHH
Q 008780          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVR  536 (554)
Q Consensus       468 ~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~  536 (554)
                      .+|++||+++|+++++|+++|.+|..+|+|++|+.+|++|++++|+| ..+...|..+..+++ ..++++
T Consensus        98 ~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n-~~~~~~l~~~~~~l~~~~~~~k  166 (169)
T d1ihga1          98 DSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAIQAELLKVKQKIKAQKDKEK  166 (169)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998 678888888887776 334333

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.79  E-value=1.2e-19  Score=154.03  Aligned_cols=107  Identities=21%  Similarity=0.228  Sum_probs=97.2

Q ss_pred             cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhcc------CCcCc
Q 008780          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGT------MTREE  222 (554)
Q Consensus       150 ~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~------m~~Ge  222 (554)
                      ....|+.+.++++|.| +.|+.||.|+|||++++.||++|+||. .+.|+.|.+|.+.++++|++++.+      |++|+
T Consensus         5 ~~psGl~y~~~~~G~G-~~p~~gd~V~v~y~g~l~~G~~fdss~~~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~~G~   83 (125)
T d1u79a_           5 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG   83 (125)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred             ECCCCCEEEEEEeccC-CCCCCCCEEEEEEEeeecCCcEEecccccCcceeEecCccccccchhhhccchhhcccccCCC
Confidence            3567999999999999 789999999999999999999999985 478999999999999999998754      99999


Q ss_pred             EEEEEEeCCccCCCCC------CCCCCCcceEEEEEeeeee
Q 008780          223 KAVIYVTSQYLTPSPL------MPVVEGCEEVHFEVELVHL  257 (554)
Q Consensus       223 ~~~~~v~~~~~~g~~~------~~~ip~~~~l~~~v~l~~~  257 (554)
                      +++++|||+++||+.+      .+.||++++|+|+|||+.+
T Consensus        84 k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          84 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            9999999999999843      3568999999999999975

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.9e-19  Score=148.55  Aligned_cols=107  Identities=21%  Similarity=0.377  Sum_probs=92.6

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCC---CCccchHHHHhccCCcCcEEEEE
Q 008780          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGK---SEVPKGLEMGIGTMTREEKAVIY  227 (554)
Q Consensus       151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~---~~~~~gle~~l~~m~~Ge~~~~~  227 (554)
                      .|.|+.++++++|.|++.|..||.|+|||++++.+|++..+     +..+..+.   .+++|||+++|.+|++||+++++
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~~~~~-----~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~~i~   80 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVY   80 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCcEeec-----cccceeeecceeeeCcHHHHhhhcchhhCeEEEE
Confidence            57899999999999988999999999999999888765443     34555554   37899999999999999999999


Q ss_pred             EeCCccCCCCCC--CCCCCcceEEEEEeeeeeeeeec
Q 008780          228 VTSQYLTPSPLM--PVVEGCEEVHFEVELVHLIQVRD  262 (554)
Q Consensus       228 v~~~~~~g~~~~--~~ip~~~~l~~~v~l~~~~~~~d  262 (554)
                      |||++|||+.+.  ..||++++|+|+|+|+++.+.+|
T Consensus        81 ip~~~ayG~~g~~~~~Ipp~s~l~f~veL~~~~~~kd  117 (117)
T d1q1ca2          81 LKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKE  117 (117)
T ss_dssp             ECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECCCC
T ss_pred             ECHHHhCcccCCCCCccCcCCeEEEEEEEEEEEeCCC
Confidence            999999998643  37999999999999999987654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-18  Score=146.43  Aligned_cols=115  Identities=26%  Similarity=0.456  Sum_probs=108.4

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..++++|+.+++.|+|++|+..|++||.    .+|.+           ..+|+++|.||.++++|.+|+.+|.+++++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHN-----------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcc-----------hhhhhcccccccccccccccchhhhhHHHh
Confidence            467889999999999999999999999999    89988           789999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      +|+++.+|+++|.++..+|++++|+.+|+++++++|++ +.+...+..++.
T Consensus        67 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~l~~  116 (117)
T d1elwa_          67 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN-PQLKEGLQNMEA  116 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHhC
Confidence            99999999999999999999999999999999999998 677777777653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.9e-18  Score=148.78  Aligned_cols=123  Identities=27%  Similarity=0.456  Sum_probs=113.8

Q ss_pred             hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008780          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  471 (554)
Q Consensus       392 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  471 (554)
                      .+.++.|..++.+||.+|+.|+|++|+..|++|+.    ++|.+           ..+|+|+|.||+.+|++.+|+.+|+
T Consensus         4 ~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~   68 (159)
T d1a17a_           4 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRSLAYLRTECYGYALGDAT   68 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccc----cchhh-----------hhhhhhhHHHHHhccccchHHHHHH
Confidence            56678999999999999999999999999999999    88988           7899999999999999999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       472 ~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      ++|+++|+++.+|+++|.++..+|+|++|+.+|++++.++|++ ..+...+..+....+
T Consensus        69 kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~  126 (159)
T d1a17a_          69 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKIVK  126 (159)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998 667766666654443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=3.3e-17  Score=150.43  Aligned_cols=102  Identities=25%  Similarity=0.443  Sum_probs=98.4

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      |+.+++.|+.+|+.|+|++|+..|++||.    ++|.+           ..+|+|+|.||+++|+|++|+.+|++|+.++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~----~~p~~-----------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLV-----------AVYYTNRALCYLKMQQPEQALADCRRALELD   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            67899999999999999999999999999    89988           7899999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      |+++.+|+++|.+|..+|+|++|+.+|++|++++|++
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999998854

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7.8e-16  Score=131.10  Aligned_cols=117  Identities=22%  Similarity=0.364  Sum_probs=103.3

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      +.|..++++|+.+|+.|+|++|+.+|++||+    ++|.+           ..+++|+|.||.++++|.+|+.+|+++++
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTN-----------MTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccc-----------HHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            4688999999999999999999999999999    88887           78999999999999999999999999999


Q ss_pred             hCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780          476 ANPAHV-------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (554)
Q Consensus       476 ~~p~~~-------ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~  529 (554)
                      ++|.+.       ++|+++|.++..+++|++|+.+|++++.++|+  .++...+..+.+.+
T Consensus        67 l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~--~~~~~~l~~~~k~l  125 (128)
T d1elra_          67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--PDVLKKCQQAEKIL  125 (128)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHH
Confidence            998764       57888899999999999999999999999986  34555555554443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.5e-14  Score=121.68  Aligned_cols=113  Identities=14%  Similarity=0.184  Sum_probs=98.9

Q ss_pred             HHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCC
Q 008780          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVLDANP  478 (554)
Q Consensus       402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~al~~~p  478 (554)
                      -+.+|.++..++|.+|.+.|++|+.    ++|.+           ..+++|+|.|+++.+   ++.+|+..+++++..+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~----~~p~~-----------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~   67 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKA----AGSVS-----------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS   67 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH----HSCCC-----------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC
Confidence            3577889999999999999999999    89998           789999999998744   56789999999999998


Q ss_pred             CC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          479 AH--VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       479 ~~--~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      .+  +.+||++|.+|..+|+|++|+.+|+++|+++|+| ..+...+..+..+..
T Consensus        68 ~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~-~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          68 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN-NQAKELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHHc
Confidence            66  4599999999999999999999999999999999 667776666665543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=2.7e-13  Score=128.75  Aligned_cols=113  Identities=21%  Similarity=0.223  Sum_probs=104.3

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      ..+..+..+|..+++.|+|++|+..|++|+.    ++|.+           ..+++++|.||.++|++++|+.+++++++
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~----l~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~   99 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALA----IRPDM-----------PEVFNYLGIYLTQAGNFDAAYEAFDSVLE   99 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhc----cCCCC-----------HHHHhhhchHHHHHHHHHHhhhhhhHHHH
Confidence            4688899999999999999999999999999    89988           78999999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~  524 (554)
                      ++|+++.+++++|.++..+|++++|+..|+++++++|++ ......+..
T Consensus       100 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~  147 (259)
T d1xnfa_         100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-PFRSLWLYL  147 (259)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc-HHHHHHHHH
Confidence            999999999999999999999999999999999999987 444443433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.6e-13  Score=122.06  Aligned_cols=101  Identities=14%  Similarity=0.210  Sum_probs=91.3

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      ..+..++++|..++.+++|+.|+..|.++       .+.+           ..+++|+|.||.++|+|++|+.+|++|++
T Consensus         3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~i-------~~~~-----------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~   64 (192)
T d1hh8a_           3 VEAISLWNEGVLAADKKDWKGALDAFSAV-------QDPH-----------SRICFNIGCMYTILKNMTEAEKAFTRSIN   64 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTS-------SSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHhc-------CCCC-----------HHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            45678889999999999999999999752       3333           46789999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      ++|+++.+|+++|.++..+|+|++|+.+|++|+...+.|
T Consensus        65 ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          65 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            999999999999999999999999999999999987655

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.45  E-value=4.4e-14  Score=110.20  Aligned_cols=85  Identities=14%  Similarity=0.214  Sum_probs=76.3

Q ss_pred             CCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCC
Q 008780           44 TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVA  123 (554)
Q Consensus        44 ~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~  123 (554)
                      +++.||.|.++|+++. ||+.|+++..      ..+.+.+|.+++++||+.+|.+|++|+++.|.|++..+|+..+++  
T Consensus         1 k~a~GD~V~idy~g~~-dG~~~~~~~~------~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~la--   71 (85)
T d1hxva_           1 KLANGDIAIIDFTGIV-DNKKLASASA------QNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKELQ--   71 (85)
T ss_dssp             CCCSSEEEEEEEEEEE-TTEECSTTCC------SEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGGG--
T ss_pred             CCCCCCEEEEEEEEEE-CCEEcccccc------cCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCcccCC--
Confidence            3689999999999995 9999987653      478899999999999999999999999999999999999987754  


Q ss_pred             CCCCCCCCCceEEEEEEEeee
Q 008780          124 APSTFPKDEELHFEIEMIDFA  144 (554)
Q Consensus       124 ~~~~ip~~~~l~~~v~l~~~~  144 (554)
                             |.++.|+|+|.+|+
T Consensus        72 -------Gk~~~f~V~v~~Vk   85 (85)
T d1hxva_          72 -------SKPVTFEVVLKAIK   85 (85)
T ss_dssp             -------SCCCEEEEEECCBC
T ss_pred             -------CCcEEEEEEEEEeC
Confidence                   89999999998863

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.45  E-value=1.9e-14  Score=125.03  Aligned_cols=75  Identities=17%  Similarity=0.334  Sum_probs=67.0

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccC---------CCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCcc
Q 008780           45 PSDGDQVAYHCTVRTLDGVIVESTRSE---------YGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHY  115 (554)
Q Consensus        45 ~~~gd~V~~~y~~~~~~g~~~~st~~~---------~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~y  115 (554)
                      +++||.|.+||++++.||++|+||++.         ......|+.|.+|.+++++||+++|.+|++|+++.|.|||+.||
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ay   81 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhc
Confidence            578999999999999999999999742         01234699999999999999999999999999999999999999


Q ss_pred             CCCC
Q 008780          116 GEDD  119 (554)
Q Consensus       116 g~~~  119 (554)
                      |...
T Consensus        82 G~~d   85 (151)
T d1ix5a_          82 GNRN   85 (151)
T ss_dssp             CSCC
T ss_pred             cccc
Confidence            9865

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.43  E-value=4.5e-13  Score=110.74  Aligned_cols=94  Identities=12%  Similarity=0.045  Sum_probs=89.5

Q ss_pred             HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  479 (554)
                      ...+.|..++++|++.+|+..|++++.    ..|.+           ..+++++|.|+.+++++.+|+.+++++++++|+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   82 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQ----KEPER-----------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   82 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcc----ccccc-----------chhhhhhhhhhhhhhhHHHhhcccccccccccc
Confidence            346789999999999999999999999    88887           789999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008780          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMM  508 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al  508 (554)
                      ++.+|+.+|.+|..+|++++|++.|+++|
T Consensus        83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          83 DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999999999999986

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.41  E-value=5.2e-13  Score=115.82  Aligned_cols=110  Identities=19%  Similarity=0.209  Sum_probs=95.3

Q ss_pred             hhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHH
Q 008780          405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL----------GECRKSIEACNKVL  474 (554)
Q Consensus       405 G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl----------~~~~~A~~~~~~al  474 (554)
                      +..+-+.+.|++|+..|++|+.    ++|.+           ..+++|+|.|+..+          +++++|+..+++|+
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~----~~P~~-----------~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl   68 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYK----SNPLD-----------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL   68 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHh----hCCcc-----------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            4556677889999999999999    99999           78999999999865          45689999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          475 DANPAHVKGLYRRGMAYMALGE-----------FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       475 ~~~p~~~ka~~~~g~a~~~l~~-----------~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      +++|+++.+|+++|.+|..+|+           |++|+.+|++|++++|+| ..++..|....+..+
T Consensus        69 ~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~-~~~~~~L~~~~ka~~  134 (145)
T d1zu2a1          69 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN-THYLKSLEMTAKAPQ  134 (145)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHTHHH
T ss_pred             HhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCH-HHHHHHHHHHHHHHH
Confidence            9999999999999999998764           799999999999999998 667777766655544

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.40  E-value=1.2e-13  Score=119.93  Aligned_cols=74  Identities=15%  Similarity=0.174  Sum_probs=67.7

Q ss_pred             CCCCceEEEEEEEEeCCCcEEEecC--------------CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccC
Q 008780          169 PRAPYEVKAWISAKTGDGKLILSHR--------------EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT  234 (554)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~--------------~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~  234 (554)
                      ++.|+.|++||++++.||++|+||.              .++|++|.+|.|+++||||++|.+|++|+++.+.|||+.||
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ay   81 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhc
Confidence            6789999999999999999999873              35799999999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q 008780          235 PSPLMPVV  242 (554)
Q Consensus       235 g~~~~~~i  242 (554)
                      |...+..+
T Consensus        82 G~~d~~~v   89 (151)
T d1ix5a_          82 GNRNEMLI   89 (151)
T ss_dssp             CSCCSTTB
T ss_pred             cccccCcc
Confidence            98765543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.39  E-value=9.8e-13  Score=115.52  Aligned_cols=118  Identities=18%  Similarity=0.251  Sum_probs=94.4

Q ss_pred             hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (554)
Q Consensus       394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (554)
                      .+..+..++..|+.+|..|+|++|+..|++||+.........   ..........+|+|+|.||.++|+|++|+.+|+++
T Consensus         5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~---~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~a   81 (156)
T d2hr2a1           5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhh---hcccchhHHHHHHHHHHHHHHcCccchhhHhhhhh
Confidence            345566777889999999999999999999999543322111   11112234678999999999999999999999999


Q ss_pred             HhhCC-----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          474 LDANP-----------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       474 l~~~p-----------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      |.+.|           ...++|+++|.+|..+|++++|+.+|++|+++.|..
T Consensus        82 l~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          82 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            98753           235689999999999999999999999999996643

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.5e-12  Score=125.54  Aligned_cols=118  Identities=9%  Similarity=0.017  Sum_probs=72.0

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC-HHHHHHHHHHHH
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEACNKVL  474 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~-~~~A~~~~~~al  474 (554)
                      +.+..+...|..+.+.+++++|+..|++||+    ++|.+           ..+|+++|.|+..+++ +++|+.++++++
T Consensus        41 ~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~----lnP~~-----------~~a~~~r~~~l~~l~~~~~eal~~~~~al  105 (315)
T d2h6fa1          41 KFRDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAAN-----------YTVWHFRRVLLKSLQKDLHEEMNYITAII  105 (315)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHH----HCCCC-----------hHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence            4555666667777777778888888888887    67776           4555566655555543 556666666666


Q ss_pred             hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (554)
Q Consensus       475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~  529 (554)
                      +++|++..+|+++|.++..+|++++|+..|++|++++|+| ..++..+..+....
T Consensus       106 ~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n-~~a~~~~~~~~~~~  159 (315)
T d2h6fa1         106 EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-YHAWQHRQWVIQEF  159 (315)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc-hHHHHHHHHHHHHH
Confidence            6666666666666666665666666666666666665555 34444444443333

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.30  E-value=1.8e-12  Score=100.77  Aligned_cols=84  Identities=21%  Similarity=0.156  Sum_probs=73.9

Q ss_pred             CCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcceE
Q 008780          169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEV  248 (554)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~~l  248 (554)
                      +.+||.|+|+|+++. ||+.++++. .+.++|.+|.++++|||+++|.+|++|+++.|.|++...|+...    .+++++
T Consensus         2 ~a~GD~V~idy~g~~-dG~~~~~~~-~~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~----laGk~~   75 (85)
T d1hxva_           2 LANGDIAIIDFTGIV-DNKKLASAS-AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKE----LQSKPV   75 (85)
T ss_dssp             CCSSEEEEEEEEEEE-TTEECSTTC-CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSG----GGSCCC
T ss_pred             CCCCCEEEEEEEEEE-CCEEccccc-ccCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCccc----CCCCcE
Confidence            678999999999975 999988654 46789999999999999999999999999999999999998653    367899


Q ss_pred             EEEEeeeeee
Q 008780          249 HFEVELVHLI  258 (554)
Q Consensus       249 ~~~v~l~~~~  258 (554)
                      .|+|+|++++
T Consensus        76 ~f~V~v~~Vk   85 (85)
T d1hxva_          76 TFEVVLKAIK   85 (85)
T ss_dssp             EEEEEECCBC
T ss_pred             EEEEEEEEeC
Confidence            9999998873

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.1e-11  Score=110.76  Aligned_cols=101  Identities=9%  Similarity=0.096  Sum_probs=93.3

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  478 (554)
                      ..+.++|..++..|+|++|+..|++|++    ++|..           ..+|+|+|.||.++|+|++|+.+|++|+...+
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~----ldp~~-----------~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~  101 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSIN----RDKHL-----------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  101 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHH----Hhhhh-----------hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCc
Confidence            4578999999999999999999999999    89988           78999999999999999999999999998765


Q ss_pred             CC----------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          479 AH----------------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       479 ~~----------------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      .+                ..+++++|.++..++++++|+..|.+|+++.|..
T Consensus       102 ~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         102 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            43                4789999999999999999999999999998874

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.4e-11  Score=120.65  Aligned_cols=101  Identities=22%  Similarity=0.366  Sum_probs=95.8

Q ss_pred             HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (554)
Q Consensus       399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  478 (554)
                      ..+...|..++..|++++|+..|++++.    ..|.+           ..+++++|.||.++|++++|+.+|+++++++|
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  237 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALS----VRPND-----------YLLWNKLGATLANGNQSEEAVAAYRRALELQP  237 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccc----ccccc-----------ccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence            4567789999999999999999999999    78877           67999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       479 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +++.+|+++|.++..+|++++|+..|++|++++|++
T Consensus       238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  273 (323)
T d1fcha_         238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  273 (323)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC
Confidence            999999999999999999999999999999999987

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.2e-11  Score=119.67  Aligned_cols=113  Identities=7%  Similarity=0.036  Sum_probs=102.3

Q ss_pred             HHHHHHHhhhhhhhcC-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          397 EAEKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g-~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      ....+..+|..+...+ ++++|+..|+++++    .+|.+           ..++.++|.++.++|++++|+.+++++++
T Consensus        76 ~~~a~~~r~~~l~~l~~~~~eal~~~~~al~----~~p~~-----------~~a~~~~~~~~~~l~~~~eAl~~~~kal~  140 (315)
T d2h6fa1          76 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIE----EQPKN-----------YQVWHHRRVLVEWLRDPSQELEFIADILN  140 (315)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH----HHHhh-----------hhHHHHHhHHHHhhccHHHHHHHHhhhhh
Confidence            4567889999988876 59999999999999    89988           78999999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      ++|++..+|+++|.++..++++++|+.+|++|++++|+| ..++..+..+
T Consensus       141 ~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n-~~a~~~r~~~  189 (315)
T d2h6fa1         141 QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN-NSVWNQRYFV  189 (315)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc-HHHHHHHHHH
Confidence            999999999999999999999999999999999999998 4555544444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=2.5e-11  Score=114.73  Aligned_cols=128  Identities=16%  Similarity=0.125  Sum_probs=101.1

Q ss_pred             hhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHH
Q 008780          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR  487 (554)
Q Consensus       408 ~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~  487 (554)
                      +....+++.|+..+.+++.    ..+..+       ...+.+++++|.||.++|+|++|+.+++++|.++|+++.+|+++
T Consensus         9 ~~~~~~~e~al~~~~e~l~----~~~~~~-------~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~l   77 (259)
T d1xnfa_           9 LQPTLQQEVILARMEQILA----SRALTD-------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL   77 (259)
T ss_dssp             CCCCHHHHHHHHHHHHHHT----SSCCCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHH----hhhcCC-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhh
Confidence            3344567788888888776    333222       22467899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780          488 GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       488 g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      |.++..+|++++|+.+|++|++++|++ ..+...+..+.......+.+.  ..|++.+...|
T Consensus        78 g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~--~~~~~al~~~p  136 (259)
T d1xnfa_          78 GIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRDKLAQ--DDLLAFYQDDP  136 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHH--HHHHHHHHHCT
T ss_pred             chHHHHHHHHHHhhhhhhHHHHHHhhh-hhhHHHHHHHHHHHhhHHHHH--HHHHHHHhhcc
Confidence            999999999999999999999999998 566666666655554333444  56666655444

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.7e-11  Score=117.17  Aligned_cols=122  Identities=14%  Similarity=0.185  Sum_probs=76.4

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHH-----------------------HHhhhHHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-----------------------VFVGKRNLLHLNVA  454 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~-----------------------~~~~~~~~~~~nla  454 (554)
                      +..+...|..+++.|++++|+..|++|++    +.|.+.+-..                       ........++.+++
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  312 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIE----LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA  312 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHH
Confidence            55667788888899999999999999988    7776632100                       00011123555666


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (554)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~  524 (554)
                      .++.++|++++|+..++++++++|+++.+++++|.++..+|++++|+..|++|++++|++ ..+...|..
T Consensus       313 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~lg~  381 (388)
T d1w3ba_         313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-ADAYSNMGN  381 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC-HHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHH
Confidence            666666666666666666666666666666666666666666666666666666666665 344443333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.19  E-value=1.7e-10  Score=94.85  Aligned_cols=93  Identities=15%  Similarity=0.083  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (554)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~  528 (554)
                      .++++|.++++.|++.+|+..+++++..+|+++.+|+.+|.++..++++++|+.+|++|++++|++ ..+...|..+...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~la~~y~~   96 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHTN   96 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc-ccchHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999998 6788888888777


Q ss_pred             HHHHHHHHHHHHHHhh
Q 008780          529 RQVKLKVRLENSLKGC  544 (554)
Q Consensus       529 ~~~~~~~~~~~~y~~~  544 (554)
                      +....++.  +.+++.
T Consensus        97 ~g~~~~A~--~~l~~~  110 (112)
T d1hxia_          97 EHNANAAL--ASLRAW  110 (112)
T ss_dssp             HHHHHHHH--HHHHHH
T ss_pred             CCCHHHHH--HHHHHH
Confidence            76444544  566654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.1e-10  Score=115.41  Aligned_cols=102  Identities=19%  Similarity=0.281  Sum_probs=60.5

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+...|..++..++|++|+..|++++.    ..+..           ..++.++|.++.+++++++|+..++++++++
T Consensus       203 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  267 (388)
T d1w3ba_         203 LDAYINLGNVLKEARIFDRAVAAYLRALS----LSPNH-----------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ  267 (388)
T ss_dssp             HHHHHHHHHHHHTTTCTTHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhhhhccccHHHHHHHHHHhHH----HhhhH-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            56788899999999999999999999998    55554           3344444444444444444444444444444


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      |+++.+++.+|.++..++++++|+..|++++...|.+
T Consensus       268 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  304 (388)
T d1w3ba_         268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH  304 (388)
T ss_dssp             SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCcc
Confidence            4444444444444444444444444444444444433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.18  E-value=4e-10  Score=100.72  Aligned_cols=119  Identities=15%  Similarity=0.161  Sum_probs=101.4

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc-----CC--CChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-----NP--QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  467 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~-----~p--~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~  467 (554)
                      +.....+.+.|+.++..|++++|+..|.+|+.+...-     ..  .-..+...+......++.+++.++.++|+|.+|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            5567889999999999999999999999999943311     00  0112344566777889999999999999999999


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCC
Q 008780          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM-------MKVDKS  513 (554)
Q Consensus       468 ~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~a-------l~l~P~  513 (554)
                      .+|++++.++|.+..+|.+++.+|..+|++.+|+..|+++       |-++|.
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            9999999999999999999999999999999999999998       456886

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.1e-10  Score=92.84  Aligned_cols=89  Identities=15%  Similarity=0.158  Sum_probs=74.4

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +....+.|+.+++.|+|..|+..|++|++.........        .....++.|+|.|+.++|+|++|+.+++++|+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~--------~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC--------ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            45677999999999999999999999999543321111        1236789999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHc
Q 008780          478 PAHVKGLYRRGMAYMAL  494 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l  494 (554)
                      |+++.++++++.....+
T Consensus        77 P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          77 PEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999998776654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.8e-10  Score=112.42  Aligned_cols=98  Identities=13%  Similarity=0.132  Sum_probs=94.4

Q ss_pred             HHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCh
Q 008780          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (554)
Q Consensus       402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~  481 (554)
                      .++|..+++.|+|++|+..|+++++    .+|.+           ..+|.++|.|+..++++++|+.++.++++++|++.
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   87 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQ----QDPKH-----------MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ   87 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH----SCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCChHHHHHHHHhhhccccccc
Confidence            5789999999999999999999999    89988           77999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       482 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      .+|+++|.++..++++++|+..|++++.++|.+
T Consensus        88 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  120 (323)
T d1fcha_          88 TALMALAVSFTNESLQRQACEILRDWLRYTPAY  120 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred             cccccccccccccccccccccchhhHHHhccch
Confidence            999999999999999999999999999999875

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=6.5e-10  Score=91.97  Aligned_cols=98  Identities=10%  Similarity=0.105  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780          450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (554)
Q Consensus       450 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~  529 (554)
                      +.+.|..+++.|+|++|+..|+++|.++|+++.+|+.+|.+|..+|++++|+.+|.++++++|++ ..+...+..+...+
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~   84 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccch-hhHHHHHHHHHHHc
Confidence            46789999999999999999999999999999999999999999999999999999999999998 66777777776666


Q ss_pred             HHHHHHHHHHHHHhhcccccc
Q 008780          530 QVKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       530 ~~~~~~~~~~~y~~~f~~~~~  550 (554)
                      ...+++.  ..|++.+...|.
T Consensus        85 ~~~~~A~--~~~~~a~~~~p~  103 (117)
T d1elwa_          85 NRFEEAK--RTYEEGLKHEAN  103 (117)
T ss_dssp             TCHHHHH--HHHHHHHTTCTT
T ss_pred             cCHHHHH--HHHHHHHHhCCC
Confidence            6455555  788888776654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=6.5e-10  Score=97.23  Aligned_cols=100  Identities=12%  Similarity=0.041  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      +.-+...|.+|++.|+|++|+.+++++++++|+++.+|+++|.+++.+|++++|+.+|++|++++|++ ..+...+..+.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~-~~a~~~~g~~~   88 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc-hHHHHHHHHHH
Confidence            44567889999999999999999999999999999999999999999999999999999999999998 55666666665


Q ss_pred             HHHHHHHHHHHHHHHHhhccccc
Q 008780          527 KQRQVKLKVRLENSLKGCLTRSL  549 (554)
Q Consensus       527 ~~~~~~~~~~~~~~y~~~f~~~~  549 (554)
                      ..+...+.+.  ..|++.....|
T Consensus        89 ~~~g~~~eA~--~~~~~a~~~~p  109 (159)
T d1a17a_          89 MALGKFRAAL--RDYETVVKVKP  109 (159)
T ss_dssp             HHTTCHHHHH--HHHHHHHHHST
T ss_pred             HHcCCHHHHH--HHHHHHHHcCC
Confidence            5555333333  45665554443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=3.3e-10  Score=102.51  Aligned_cols=97  Identities=13%  Similarity=0.111  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      .-+.+.|.++++.|+|++|+..|.+||+++|.++.+|+++|.||..+|+|++|+.+|++|++++|++ ..++..+..+..
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~-~~a~~~lg~~~~   83 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc-HHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999999999999999999998 667777777777


Q ss_pred             HHHHHHHHHHHHHHHhhccc
Q 008780          528 QRQVKLKVRLENSLKGCLTR  547 (554)
Q Consensus       528 ~~~~~~~~~~~~~y~~~f~~  547 (554)
                      .+...+++.  ..|++.+..
T Consensus        84 ~l~~~~~A~--~~~~~al~l  101 (201)
T d2c2la1          84 EMESYDEAI--ANLQRAYSL  101 (201)
T ss_dssp             HTTCHHHHH--HHHHHHHHH
T ss_pred             HCCCHHHHH--HHHHHHHHh
Confidence            766444444  567666543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=7.8e-10  Score=87.81  Aligned_cols=81  Identities=11%  Similarity=0.037  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT  519 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~-------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~  519 (554)
                      +.-++++|..++++|+|.+|+.++++|+++.|.+       +.+|+++|.++..+|++++|+..|++||+++|++ ..+.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~-~~a~   83 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH-QRAN   83 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC-HHHH
Confidence            3456799999999999999999999999986543       6789999999999999999999999999999999 5566


Q ss_pred             HHHHHHHHH
Q 008780          520 AALSKLKKQ  528 (554)
Q Consensus       520 ~~l~~l~~~  528 (554)
                      .-+..+++.
T Consensus        84 ~Nl~~~~~~   92 (95)
T d1tjca_          84 GNLKYFEYI   92 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555443

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=7.6e-10  Score=89.26  Aligned_cols=89  Identities=17%  Similarity=0.278  Sum_probs=76.2

Q ss_pred             CCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCC
Q 008780           43 STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPV  122 (554)
Q Consensus        43 ~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~  122 (554)
                      ..++.||.|.++|+++ .||+.+++..      ...+.+.+|.+.+++||+.+|.||++|+++.|.+.....|....+. 
T Consensus        13 r~a~~GD~v~id~~~~-~dG~~~~~~~------~~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~~la-   84 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGS-VDGEEFEGGK------ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLK-   84 (106)
T ss_dssp             SSCCTTEEEEEEEECC-SSSSCCSTTE------EEEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCCTTTT-
T ss_pred             ccccCCCEEEEEEEEE-ECCEECCCCc------ccceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCchhhC-
Confidence            3368899999999987 5999887543      3468999999999999999999999999999999988888766554 


Q ss_pred             CCCCCCCCCCceEEEEEEEeeeccc
Q 008780          123 AAPSTFPKDEELHFEIEMIDFAKAK  147 (554)
Q Consensus       123 ~~~~~ip~~~~l~~~v~l~~~~~~~  147 (554)
                              |.++.|+|+|.+|....
T Consensus        85 --------GK~v~f~V~v~~i~~~~  101 (106)
T d1l1pa_          85 --------GKAAKFAINLKKVEERE  101 (106)
T ss_dssp             --------TCCEEEEEEEEEEECCC
T ss_pred             --------CCEEEEEEEEEEecccc
Confidence                    89999999999997654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.5e-09  Score=89.83  Aligned_cols=68  Identities=12%  Similarity=0.269  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +..+-++|.++++.++|++|+.+++++|+++|+++.+++++|.+|..+|+|++|+.+|++|++++|++
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~   71 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc
Confidence            44577999999999999999999999999999999999999999999999999999999999999876

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.88  E-value=1.1e-09  Score=89.50  Aligned_cols=87  Identities=17%  Similarity=0.299  Sum_probs=75.6

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (554)
Q Consensus        45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~  124 (554)
                      ++.||.|.++|+++ .||+.++...      ...+.+.+|.+++++||+.+|.||++|+++.|.+.....|....+.   
T Consensus        24 a~~gD~v~id~~~~-~dG~~~~~~~------~~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~la---   93 (113)
T d1t11a3          24 AENGKRVSIDFVGS-IDGVEFEGGK------AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENLK---   93 (113)
T ss_dssp             CCTTCEEEEEEEEE-SSSSCCTTCE------EEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTTS---
T ss_pred             ccCCCEEEEEEEEE-ECCEEccCCc------cceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCccccC---
Confidence            68999999999998 5898886543      3578999999999999999999999999999999988888766654   


Q ss_pred             CCCCCCCCceEEEEEEEeeeccc
Q 008780          125 PSTFPKDEELHFEIEMIDFAKAK  147 (554)
Q Consensus       125 ~~~ip~~~~l~~~v~l~~~~~~~  147 (554)
                            |.++.|.|+|.++....
T Consensus        94 ------Gk~~~f~v~v~~Ik~~~  110 (113)
T d1t11a3          94 ------GKAAKFAIKVNKVEARE  110 (113)
T ss_dssp             ------SCEEEECCCEEEEEEEE
T ss_pred             ------CCeEEEEEEEEEEEecc
Confidence                  89999999999997643

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.85  E-value=7.4e-09  Score=91.31  Aligned_cols=91  Identities=11%  Similarity=0.044  Sum_probs=83.2

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      ..+..+.++|..+++.|+|.+|+..|++||+    ++|.+           ..+|+++|.||..+++|++|+.+++++++
T Consensus        75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~----~~p~~-----------~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1          75 VALSCVLNIGACKLKMSDWQGAVDSCLEALE----IDPSN-----------TKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhcccchhhhhhhhhhh----hhhhh-----------hhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            3566778899999999999999999999999    89988           78999999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHH
Q 008780          476 ANPAHVKGLYRRGMAYMALGEFEEAQ  501 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~~~l~~~~~A~  501 (554)
                      ++|++..++..++.+...+....++.
T Consensus       140 l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         140 IAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988877766654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.82  E-value=1.6e-08  Score=89.09  Aligned_cols=88  Identities=16%  Similarity=0.096  Sum_probs=79.8

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+.++|.++++.++|.+|+..|++|+.    ++|.+           ..+++++|.||..+|+|++|+.++.+++.+
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~----l~p~~-----------~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALG----LDSAN-----------EKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhh----cccch-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345567899999999999999999999999    89988           789999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHH
Q 008780          477 NPAHVKGLYRRGMAYMALGEFEE  499 (554)
Q Consensus       477 ~p~~~ka~~~~g~a~~~l~~~~~  499 (554)
                      +|+|..++..++.+...+..+.+
T Consensus       128 ~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         128 NPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhHHH
Confidence            99999999999888877766544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.6e-08  Score=89.23  Aligned_cols=89  Identities=11%  Similarity=0.034  Sum_probs=81.1

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+.++|..+++.|+|.+|+..|++||.    ++|.+           ..+++++|.||..+|+|++|+.+++++++++
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~----~~p~~-----------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALE----LDSNN-----------EKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhh----ccccc-----------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            44566799999999999999999999999    89988           7899999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHH
Q 008780          478 PAHVKGLYRRGMAYMALGEFEEAQ  501 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~~~~~A~  501 (554)
                      |+|..+...++.++..+.+..+..
T Consensus       127 P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         127 PNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988877666544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=2.3e-08  Score=96.15  Aligned_cols=108  Identities=9%  Similarity=0.098  Sum_probs=89.7

Q ss_pred             HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      +.+..+.+.|+.+...++|++|+..|.+|++........         .....+|.|+|.||.+++++++|+.+++++++
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~---------~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~  105 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE---------DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ  105 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence            446678888999999999999999999999964433211         11367899999999999999999999999998


Q ss_pred             hCCCC------hHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCC
Q 008780          476 ANPAH------VKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDK  512 (554)
Q Consensus       476 ~~p~~------~ka~~~~g~a~~~-l~~~~~A~~~~~~al~l~P  512 (554)
                      +.+.+      ..++.++|.++.. ++++++|+..|++|+++.+
T Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         106 IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            86554      6789999998865 7999999999999998844

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.74  E-value=1.7e-08  Score=87.43  Aligned_cols=83  Identities=13%  Similarity=0.063  Sum_probs=76.3

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  477 (554)
                      +..+.++|..+++.++|.+|+..|++||+    ++|.+           ..+|+++|.||..+|+|++|+.++.++++++
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~----~~p~~-----------~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLK----IDKNN-----------VKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhcccc----ccchh-----------hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45667899999999999999999999999    89988           7899999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcC
Q 008780          478 PAHVKGLYRRGMAYMALG  495 (554)
Q Consensus       478 p~~~ka~~~~g~a~~~l~  495 (554)
                      |+|..+...++.+...+.
T Consensus       132 P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         132 PNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999988888776553

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.1e-08  Score=104.38  Aligned_cols=108  Identities=8%  Similarity=-0.053  Sum_probs=75.7

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      +...|..+.+.+++..|+..|.+++.    ..             ...++.++|.++..+++|++|+.+|.+|+.++|++
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~----~~-------------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~  185 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCS----YI-------------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN  185 (497)
T ss_dssp             --------------------CCHHHH----HH-------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB
T ss_pred             HHHhHHHHHhCCCHHHHHHHHHHHhC----CC-------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            34455555555555555555555554    11             24688999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ..+|+++|.++...|++.+|+.+|.+|+.++|.. ..++.-|..+-
T Consensus       186 ~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~-~~a~~nL~~~~  230 (497)
T d1ya0a1         186 GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF-PAASTNLQKAL  230 (497)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-HHHHHHHHHHH
Confidence            9999999999999999999999999999999988 55665555443

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=4.5e-08  Score=78.60  Aligned_cols=87  Identities=17%  Similarity=0.164  Sum_probs=70.4

Q ss_pred             CCCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcc
Q 008780          167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE  246 (554)
Q Consensus       167 ~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~  246 (554)
                      ..++.||.|+|+|++ ..||..+.+. ..+.+.|.+|.+.++|||+++|.||++|+++.|.+.--..|..    .--.++
T Consensus        13 r~a~~GD~v~id~~~-~~dG~~~~~~-~~~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~----~~laGK   86 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTG-SVDGEEFEGG-KASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHA----ENLKGK   86 (106)
T ss_dssp             SSCCTTEEEEEEEEC-CSSSSCCSTT-EEEEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCC----TTTTTC
T ss_pred             ccccCCCEEEEEEEE-EECCEECCCC-cccceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCc----hhhCCC
Confidence            456789999999998 4688887643 2356899999999999999999999999999999975444432    123678


Q ss_pred             eEEEEEeeeeeee
Q 008780          247 EVHFEVELVHLIQ  259 (554)
Q Consensus       247 ~l~~~v~l~~~~~  259 (554)
                      ++.|+|+|+++..
T Consensus        87 ~v~f~V~v~~i~~   99 (106)
T d1l1pa_          87 AAKFAINLKKVEE   99 (106)
T ss_dssp             CEEEEEEEEEEEC
T ss_pred             EEEEEEEEEEecc
Confidence            9999999999964

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=3.5e-07  Score=74.46  Aligned_cols=83  Identities=18%  Similarity=0.239  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008780          447 NLLHLNVAACLLKLG---ECRKSIEACNKVLDANPAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  522 (554)
Q Consensus       447 ~~~~~nla~~~~kl~---~~~~A~~~~~~al~~~p~~-~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l  522 (554)
                      ....+|.|.|+.+..   +..+|+..++.++..+|.+ ..+||.+|.+|+.+|+|++|++.++++|+++|+| ..+....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n-~qA~~L~  113 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN-KQVGALK  113 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc-HHHHHHH
Confidence            457789999998765   4679999999999999876 4899999999999999999999999999999999 5566555


Q ss_pred             HHHHHHHH
Q 008780          523 SKLKKQRQ  530 (554)
Q Consensus       523 ~~l~~~~~  530 (554)
                      ..+..++.
T Consensus       114 ~~Ie~~~~  121 (124)
T d2pqrb1         114 SMVEDKIQ  121 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            55555543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=5.2e-07  Score=86.35  Aligned_cols=111  Identities=13%  Similarity=0.096  Sum_probs=90.9

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH-ccCHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKV  473 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~a  473 (554)
                      ...+..+.+.|+.+.+.+++++|+..|++|+++.......         .....++.++|.+|.. +++|++|+.++.+|
T Consensus        74 ~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A  144 (290)
T d1qqea_          74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDCYELA  144 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc---------hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence            3457788999999999999999999999999965543221         1125678899988865 69999999999999


Q ss_pred             HhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780          474 LDANPA------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (554)
Q Consensus       474 l~~~p~------~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~  514 (554)
                      +++.+.      ...++.++|.++..+|+|++|+..|++++.+.|.+
T Consensus       145 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence            987432      35678999999999999999999999999998876

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.53  E-value=1.7e-07  Score=80.16  Aligned_cols=92  Identities=13%  Similarity=0.113  Sum_probs=71.0

Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL----------GEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       456 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l----------~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      .+.+++.|++|+..+++|++++|+++.+++++|.++..+          +.+++|+..|++|++++|++ ..+...+..+
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~-~~a~~~lG~~   84 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNA   84 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh-hHHHhhHHHH
Confidence            356788899999999999999999999999999999865          55689999999999999998 5666666655


Q ss_pred             HHHHH-----------HHHHHHHHHHHHhhcccccc
Q 008780          526 KKQRQ-----------VKLKVRLENSLKGCLTRSLG  550 (554)
Q Consensus       526 ~~~~~-----------~~~~~~~~~~y~~~f~~~~~  550 (554)
                      ...+.           ..+++.  ..|++...-.|.
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~--~~~~kal~l~P~  118 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLAT--QFFQQAVDEQPD  118 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHH--HHHHHHHHHCTT
T ss_pred             HHHcccchhhHHHHHHhHHHhh--hhhhcccccCCC
Confidence            43321           123333  677777655543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.52  E-value=4.9e-08  Score=92.39  Aligned_cols=93  Identities=13%  Similarity=0.113  Sum_probs=83.1

Q ss_pred             hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHH
Q 008780          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  483 (554)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka  483 (554)
                      ++..++++|++++|+..|+++++    .+|.+           ..++.+++.++...|+|++|+..++++++++|++..+
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~----~~P~d-----------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~   66 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIK----ASPKD-----------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   66 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHH----TCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH
Confidence            35678899999999999999999    99998           7899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          484 LYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       484 ~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      +..++.++...+..+++...+.+...+.
T Consensus        67 ~~~l~~ll~a~~~~~~a~~~~~~~~~~~   94 (264)
T d1zbpa1          67 ASQLRHLVKAAQARKDFAQGAATAKVLG   94 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCEECCC
T ss_pred             HHHHHHHHHhccccHHHHHHhhhhhccc
Confidence            9999999998888887776655544443

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.49  E-value=7.1e-08  Score=78.50  Aligned_cols=86  Identities=17%  Similarity=0.110  Sum_probs=69.1

Q ss_pred             CCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcce
Q 008780          168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE  247 (554)
Q Consensus       168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~~  247 (554)
                      .++.||.|+|+|+++ .||..+... .+..+.|.+|.+.++|+|+++|.||++|+++.|.++--.-|...    --.+++
T Consensus        23 ~a~~gD~v~id~~~~-~dG~~~~~~-~~~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~----~laGk~   96 (113)
T d1t11a3          23 AAENGKRVSIDFVGS-IDGVEFEGG-KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAE----NLKGKA   96 (113)
T ss_dssp             CCCTTCEEEEEEEEE-SSSSCCTTC-EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCT----TTSSCE
T ss_pred             cccCCCEEEEEEEEE-ECCEEccCC-ccceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCcc----ccCCCe
Confidence            467899999999995 678877543 34678999999999999999999999999999888744444321    126789


Q ss_pred             EEEEEeeeeeee
Q 008780          248 VHFEVELVHLIQ  259 (554)
Q Consensus       248 l~~~v~l~~~~~  259 (554)
                      +.|.|+++++..
T Consensus        97 ~~f~v~v~~Ik~  108 (113)
T d1t11a3          97 AKFAIKVNKVEA  108 (113)
T ss_dssp             EEECCCEEEEEE
T ss_pred             EEEEEEEEEEEe
Confidence            999999999964

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.47  E-value=6.4e-07  Score=87.33  Aligned_cols=115  Identities=20%  Similarity=0.136  Sum_probs=97.8

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC--HHHHHHHHHHHHh
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE--CRKSIEACNKVLD  475 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~--~~~A~~~~~~al~  475 (554)
                      ...+...+..+...+++.+|+..|+++++    .+|.+           ..++++++.++..+++  +.+|+..+.++++
T Consensus        73 l~~l~~~~~~~~~~~~~~~al~~~~~~l~----~~pk~-----------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  137 (334)
T d1dcea1          73 LQHLETEKSPEESAALVKAELGFLESCLR----VNPKS-----------YGTWHHRCWLLSRLPEPNWARELELCARFLE  137 (334)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHhhhcchHHHHHHHHHHHHHHHHHHH----hCCCc-----------HHHHHHhhHHHHHhccccHHHHHHHHHHHHh
Confidence            34556667778888889999999999999    88888           7789999999888775  8999999999999


Q ss_pred             hCCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780          476 ANPAHVKGL-YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (554)
Q Consensus       476 ~~p~~~ka~-~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~  528 (554)
                      ++|.+..++ +++|.++...+++++|+..++++++++|++ ..+...+..+...
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~-~~a~~~l~~~~~~  190 (334)
T d1dcea1         138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQ  190 (334)
T ss_dssp             HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-HHHHHHHHHHHHH
T ss_pred             hCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH
Confidence            999999986 567899999999999999999999999998 5566666655444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.45  E-value=1.5e-06  Score=84.54  Aligned_cols=122  Identities=11%  Similarity=0.005  Sum_probs=92.4

Q ss_pred             CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHH----------HHHccCHHHHHHHHHHHHhhCCCCh
Q 008780          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC----------LLKLGECRKSIEACNKVLDANPAHV  481 (554)
Q Consensus       412 g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~----------~~kl~~~~~A~~~~~~al~~~p~~~  481 (554)
                      ...++|+..|.++|.    ++|++           ..+|++++.+          +...+++.+|+.+++++++.+|++.
T Consensus        43 ~~~~~al~~~~~~l~----~~P~~-----------~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~  107 (334)
T d1dcea1          43 ELDESVLELTSQILG----ANPDF-----------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY  107 (334)
T ss_dssp             CCSHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             cccHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence            345899999999999    89988           4455444444          4445569999999999999999999


Q ss_pred             HHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008780          482 KGLYRRGMAYMALGE--FEEAQRDFEMMMKVDKSSEPDATA-ALSKLKKQRQVKLKVRLENSLKGCLTRSLGK  551 (554)
Q Consensus       482 ka~~~~g~a~~~l~~--~~~A~~~~~~al~l~P~~~~~~~~-~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~~  551 (554)
                      .+|+.+|.++..+++  +++|+..++++++++|.+ ..+.. .+..+.......+++.  ..|++++...|..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~Al--~~~~~~i~~~p~~  177 (334)
T d1dcea1         108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEEL--AFTDSLITRNFSN  177 (334)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTCCCHHHHH--HHHHTTTTTTCCC
T ss_pred             HHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchh-hhhhhhHHHHHHHhccccHHHH--HHHHHHHHcCCCC
Confidence            999999999999875  899999999999999998 34433 2323333322334444  6788888877654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.8e-07  Score=75.32  Aligned_cols=99  Identities=11%  Similarity=0.022  Sum_probs=79.9

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHH
Q 008780          451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG---EFEEAQRDFEMMMKVDKSSE-PDATAALSKLK  526 (554)
Q Consensus       451 ~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~---~~~~A~~~~~~al~l~P~~~-~~~~~~l~~l~  526 (554)
                      .+++..+..++++++|.+.|+++|.++|.++.++|++|.+++..+   ++++|+..|++++..+|++. ..+...|..+.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            366777889999999999999999999999999999999998754   55679999999999998652 23455666666


Q ss_pred             HHHHHHHHHHHHHHHHhhccccccc
Q 008780          527 KQRQVKLKVRLENSLKGCLTRSLGK  551 (554)
Q Consensus       527 ~~~~~~~~~~~~~~y~~~f~~~~~~  551 (554)
                      ..+...+++.  ..|++++...|+.
T Consensus        83 ~~~g~~~~A~--~~~~~aL~~~P~~  105 (122)
T d1nzna_          83 YRLKEYEKAL--KYVRGLLQTEPQN  105 (122)
T ss_dssp             HHTTCHHHHH--HHHHHHHHHCTTC
T ss_pred             HHHhhhHHHH--HHHHHHHHhCcCC
Confidence            6666555665  7899988877753

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=2.7e-06  Score=81.80  Aligned_cols=105  Identities=14%  Similarity=0.045  Sum_probs=87.8

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .+..+...|..+...++++.|...|.+++.    ..+.+.       ......+.++|.++..++++++|+..+++++..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  280 (366)
T d1hz4a_         212 ISNANKVRVIYWQMTGDKAAAANWLRHTAK----PEFANN-------HFLQGQWRNIARAQILLGEFEPAEIVLEELNEN  280 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHSCC----CCCTTC-------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHH----hccccc-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344566788888999999999999999887    544431       123567889999999999999999999999854


Q ss_pred             ------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780          477 ------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (554)
Q Consensus       477 ------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P  512 (554)
                            .|....+++.+|.+|..+|++++|+..|++|+++.+
T Consensus       281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         281 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence                  466788999999999999999999999999999854

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=7.8e-06  Score=78.41  Aligned_cols=105  Identities=15%  Similarity=0.064  Sum_probs=89.3

Q ss_pred             HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (554)
Q Consensus       397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (554)
                      .++...-+|..++..|++++|+..|++|+.    ..|.++.      .....++.++|.+|..+|++++|+..+.+++++
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~----~~~~~~~------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   80 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALE----ELPPGWF------YSRIVATSVLGEVLHCKGELTRSLALMQQTEQM   80 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TCCTTCH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCcCCCc------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            456666789999999999999999999999    6665532      223568999999999999999999999999987


Q ss_pred             CCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780          477 NPA------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (554)
Q Consensus       477 ~p~------~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~  511 (554)
                      .+.      ...+++.++.++...+++..|...+.+++.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          81 ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            543      35688999999999999999999999999864

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1e-06  Score=91.17  Aligned_cols=95  Identities=8%  Similarity=-0.046  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (554)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~  526 (554)
                      ...+.++|.++.+.+++.+|+..+.+++..+|  ..+++++|.++...++|++|+.+|++|++++|++ ......|..+.
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~-~~~~~~Lg~~~  196 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN-GQPYNQLAILA  196 (497)
T ss_dssp             -----------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-SHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-hHHHHHHHHHH
Confidence            56789999999999999999999999998876  5799999999999999999999999999999998 66777788776


Q ss_pred             HHHHHHHHHHHHHHHHhhcc
Q 008780          527 KQRQVKLKVRLENSLKGCLT  546 (554)
Q Consensus       527 ~~~~~~~~~~~~~~y~~~f~  546 (554)
                      ........+.  ..|.+.+.
T Consensus       197 ~~~~~~~~A~--~~y~ral~  214 (497)
T d1ya0a1         197 SSKGDHLTTI--FYYCRSIA  214 (497)
T ss_dssp             HHTTCHHHHH--HHHHHHHS
T ss_pred             HHcCCHHHHH--HHHHHHHh
Confidence            6555333333  45555443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.05  E-value=7.6e-06  Score=70.27  Aligned_cols=81  Identities=19%  Similarity=0.056  Sum_probs=64.9

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (554)
                      ...+..+.++|..+++.|+|++|+..|++++.+.........+.    ......+++|+|.||.++|++++|+.++++++
T Consensus        52 ~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          52 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE----GKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc----cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34577889999999999999999999999999765533222111    12235689999999999999999999999999


Q ss_pred             hhCCC
Q 008780          475 DANPA  479 (554)
Q Consensus       475 ~~~p~  479 (554)
                      ++.|.
T Consensus       128 ~l~~~  132 (156)
T d2hr2a1         128 EMIEE  132 (156)
T ss_dssp             HHHHH
T ss_pred             HhhHH
Confidence            98653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.03  E-value=2.2e-05  Score=69.10  Aligned_cols=84  Identities=11%  Similarity=-0.005  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----------------------hHHHHHHHHHHHHcCCHHHHHHH
Q 008780          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH----------------------VKGLYRRGMAYMALGEFEEAQRD  503 (554)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~----------------------~ka~~~~g~a~~~l~~~~~A~~~  503 (554)
                      +...+.+.|..+...|++++|+..|.+||.+.+..                      ..++.+++.++..+|++++|+.+
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            46678899999999999999999999999987643                      26789999999999999999999


Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780          504 FEMMMKVDKSSEPDATAALSKLKKQRQ  530 (554)
Q Consensus       504 ~~~al~l~P~~~~~~~~~l~~l~~~~~  530 (554)
                      ++++++++|.+ ..++..|..+.....
T Consensus        90 ~~~al~~~P~~-e~~~~~l~~al~~~G  115 (179)
T d2ff4a2          90 LEALTFEHPYR-EPLWTQLITAYYLSD  115 (179)
T ss_dssp             HHHHHHHSTTC-HHHHHHHHHHHHTTT
T ss_pred             HHHHHHhCCcc-HHHHHHHHHHHHHhc
Confidence            99999999998 455555554444333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=3.7e-05  Score=73.56  Aligned_cols=110  Identities=12%  Similarity=0.070  Sum_probs=63.3

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  480 (554)
                      +...+..+.+.++++.|...|.+++.    ..|.+.          ..++...+.+..+.++++.|...+.+++...|.+
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~----~~~~~~----------~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~  167 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLA----IEDIDP----------TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHT----SSSSCT----------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHH----HhcCCh----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Confidence            34456666678888889888988887    565542          2244455555555555555555555555555555


Q ss_pred             hHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780          481 VKGLYRRGMAYM-ALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (554)
Q Consensus       481 ~ka~~~~g~a~~-~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l  525 (554)
                      ...+...+.... ..++.+.|...|++++...|++ ..++.....+
T Consensus       168 ~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~-~~~w~~y~~~  212 (308)
T d2onda1         168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDY  212 (308)
T ss_dssp             THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhh-HHHHHHHHHH
Confidence            555555554432 2355555555555555555555 3344333333

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.96  E-value=1.5e-05  Score=74.78  Aligned_cols=71  Identities=18%  Similarity=0.155  Sum_probs=62.6

Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780          456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (554)
Q Consensus       456 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~  527 (554)
                      -+++.|++++|+..++++++.+|.++.++..+|++++..|++++|+..|+++++++|++ ..+...+..+..
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~-~~~~~~l~~ll~   75 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY-LPGASQLRHLVK   75 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999987 455555555443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.94  E-value=1.8e-05  Score=64.14  Aligned_cols=79  Identities=11%  Similarity=0.032  Sum_probs=60.1

Q ss_pred             HHHHHhhhhhhhc---CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780          399 EKIRVTGNRLFKE---GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (554)
Q Consensus       399 ~~~~~~G~~~~~~---g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (554)
                      +..++.|-.+.+.   .+..+|+..++++++    .+|.+          ...+++++|.+|.++|+|++|+.+|+++|+
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~----~~p~~----------~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYK----EAESR----------RRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH----HCGGG----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHh----cCchh----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            3445555555543   345678888888776    44433          247999999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHH
Q 008780          476 ANPAHVKGLYRRGMAY  491 (554)
Q Consensus       476 ~~p~~~ka~~~~g~a~  491 (554)
                      ++|+|..|...+-.+.
T Consensus       102 ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1         102 HERNNKQVGALKSMVE  117 (124)
T ss_dssp             HCTTCHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHH
Confidence            9999999887665543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=4.8e-05  Score=72.78  Aligned_cols=114  Identities=7%  Similarity=-0.088  Sum_probs=92.1

Q ss_pred             HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhhCCC
Q 008780          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL-KLGECRKSIEACNKVLDANPA  479 (554)
Q Consensus       401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~-kl~~~~~A~~~~~~al~~~p~  479 (554)
                      +...++...+.++++.|...|.+|+.    ..|.+           ...+.+.|.... ..++.+.|...+++++...|.
T Consensus       137 w~~~~~~~~~~~~~~~ar~i~~~al~----~~~~~-----------~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~  201 (308)
T d2onda1         137 YIQYMKFARRAEGIKSGRMIFKKARE----DARTR-----------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD  201 (308)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHT----STTCC-----------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh
Confidence            45667777788899999999999998    77766           456667776544 468999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHH
Q 008780          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE---PDATAALSKLKKQR  529 (554)
Q Consensus       480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~---~~~~~~l~~l~~~~  529 (554)
                      ++..|...+..+...|+++.|+..|++|+...|.+.   ..++..........
T Consensus       202 ~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~  254 (308)
T d2onda1         202 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI  254 (308)
T ss_dssp             CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999877542   23555555554433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.36  E-value=0.0013  Score=60.48  Aligned_cols=97  Identities=18%  Similarity=0.205  Sum_probs=82.7

Q ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH----ccCHHHHHHHHHHH
Q 008780          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACNKV  473 (554)
Q Consensus       398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~~a  473 (554)
                      +..+...|..++++++|.+|+..|++|.+    .  .+           ..++++||.+|..    ..++..|..++..+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~----~--g~-----------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a   64 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACD----L--KE-----------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   64 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----T--TC-----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----C--CC-----------HHHHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence            45778899999999999999999999988    3  23           5688999999998    67899999999998


Q ss_pred             HhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Q 008780          474 LDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKS  513 (554)
Q Consensus       474 l~~~p~~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l~P~  513 (554)
                      ...  .++.+.+.+|..+..    ..+.+.|...++++....+.
T Consensus        65 ~~~--~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          65 CDL--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccc--cccchhhccccccccccccchhhHHHHHHHhhhhhhhhh
Confidence            765  478899999988876    57899999999999987653

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.16  E-value=0.0027  Score=51.94  Aligned_cols=83  Identities=12%  Similarity=0.034  Sum_probs=61.6

Q ss_pred             cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCChHHHHH
Q 008780          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYR  486 (554)
Q Consensus       411 ~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~~~ka~~~  486 (554)
                      ..++++|+..|++|.+    .  .+           ..+++++|.+|..    ..++.+|+.+++++.+.  .++.+.++
T Consensus        36 ~~~~~~a~~~~~~aa~----~--g~-----------~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~   96 (133)
T d1klxa_          36 QINKQKLFQYLSKACE----L--NS-----------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLI   96 (133)
T ss_dssp             TSCHHHHHHHHHHHHH----T--TC-----------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             ccCHHHHHHHHhhhhc----c--cc-----------hhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHH
Confidence            3466777777777766    2  22           4567888888876    45788888888888765  57888888


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 008780          487 RGMAYMA----LGEFEEAQRDFEMMMKVDK  512 (554)
Q Consensus       487 ~g~a~~~----l~~~~~A~~~~~~al~l~P  512 (554)
                      +|.+|..    ..++++|+.+|++|.++..
T Consensus        97 Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          97 LGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            8888887    5688888888888887753

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.09  E-value=0.0023  Score=58.76  Aligned_cols=74  Identities=14%  Similarity=0.146  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHH
Q 008780          447 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKSSEPDA  518 (554)
Q Consensus       447 ~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~  518 (554)
                      ..+++++|.+|..    .+++++|+.++.++.+.  .++.+++++|.+|..    ..++++|+.+|++|..+...   .+
T Consensus       178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~---~A  252 (265)
T d1ouva_         178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK---GA  252 (265)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH---HH
T ss_pred             cccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH---HH
Confidence            5688999999987    67899999999999887  579999999999987    45899999999999998753   35


Q ss_pred             HHHHHHH
Q 008780          519 TAALSKL  525 (554)
Q Consensus       519 ~~~l~~l  525 (554)
                      ...|.+|
T Consensus       253 ~~~l~~l  259 (265)
T d1ouva_         253 CDILKQL  259 (265)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHHH
Confidence            5555544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.28  E-value=0.022  Score=46.15  Aligned_cols=93  Identities=14%  Similarity=0.081  Sum_probs=71.5

Q ss_pred             CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 008780          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY  491 (554)
Q Consensus       412 g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~  491 (554)
                      .++++|+..|++|.+    ...             ..++++++.  ....++++|+.+++++.+.  .++.+.+++|..|
T Consensus         7 kd~~~A~~~~~kaa~----~g~-------------~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y   65 (133)
T d1klxa_           7 KDLKKAIQYYVKACE----LNE-------------MFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFY   65 (133)
T ss_dssp             HHHHHHHHHHHHHHH----TTC-------------TTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH----CCC-------------hhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhh
Confidence            478999999999988    432             234555653  3457899999999998875  6899999999999


Q ss_pred             HH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780          492 MA----LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (554)
Q Consensus       492 ~~----l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~  528 (554)
                      ..    ..++++|+..|+++.+...   +.+...|..+...
T Consensus        66 ~~g~~~~~d~~~A~~~~~~aa~~g~---~~a~~~Lg~~y~~  103 (133)
T d1klxa_          66 ENGKYVKKDLRKAAQYYSKACGLND---QDGCLILGYKQYA  103 (133)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred             hhccccchhhHHHHHHHhhhhccCc---chHHHHHHHHHHc
Confidence            87    5789999999999998753   4455556655444

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.73  E-value=0.28  Score=36.70  Aligned_cols=39  Identities=15%  Similarity=0.117  Sum_probs=34.6

Q ss_pred             hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (554)
Q Consensus       392 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~  430 (554)
                      +..+..|..+..+|..+-..|+|.+|+.+|.+|+++|..
T Consensus         9 ~~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   47 (93)
T d1wfda_           9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            345778889999999999999999999999999998765

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.30  E-value=0.24  Score=35.40  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=32.3

Q ss_pred             hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (554)
Q Consensus       395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~  430 (554)
                      ++.|-.+-.+++.+.+.|+|++|++++++|+.++..
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~e   40 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   40 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            567778888999999999999999999999998765

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.62  E-value=0.87  Score=32.45  Aligned_cols=39  Identities=21%  Similarity=0.276  Sum_probs=34.4

Q ss_pred             hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (554)
Q Consensus       392 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~  430 (554)
                      ...++.|..+..+|..+=+.|+|..|+.+|..|+++|..
T Consensus         5 ~~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~   43 (77)
T d1wr0a1           5 SPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   43 (77)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            356788899999999999999999999999999998654