Citrus Sinensis ID: 008781

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550----
MDPQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVRFKNGFLHTLSYDENVK
ccccccccccHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHcccHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccccccc
ccHHHcccccccccccHHHHccHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHcccccHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHcccccccccHHHHHHHHHHHHHHHHHccc
mdpqrrqgpsvperkgqkrkldeetvIGDEQQQMQQreissssagtsssDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVkhlqapptseadrnlkpfeheveKGSAFALGLlavkpehqqlivdNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNlahenssiktrvrmeggipplvelLEFTDTKVQRAAAGALRTLafkndenknqivecnALPTLILMLRSEDSAIHYEAVGVIGnlvhsspnikKEVLAAGALQPVIGLLSSCCSESQREAALLLGQfaatdsdckvhivqrgavrpliemlqspdvqLREMSAFALGRLAQDMHNqagiahngglvPLLKlldskngslqhNAAFALygladnednvADFIRVggvqklqdgEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHlcspddqrtifiDGGGLELLLGLlgstnpkqqLDGAVALFKLANkattlssvdaappsptpqvrfkngflhtlsydenvk
mdpqrrqgpsvperkgqkrkldeetvigdeqqqmqqreissssagtSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAitnlahenssiktrvrmEGGIPPLVELLEFTDTKVQRAAAGALRtlafkndenknqiVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTlssvdaappsptpqvrfkngflhtlsydenvk
MDPQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREIssssagtsssDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDggglelllgllgSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVRFKNGFLHTLSYDENVK
**********************************************************VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHL*********************GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK***********************FL**********
***********************************************************SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVRFKNGFLHTLS******
***********************ETVIG************************QALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVRFKNGFLHTLSYDENVK
************************TVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE***NLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVRFKNGFLHTLSYDEN**
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MDPQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVRFKNGFLHTLSYDENVK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query554 2.2.26 [Sep-21-2011]
B9DHT4 710 ARM REPEAT PROTEIN INTERA yes no 0.965 0.753 0.808 0.0
B7U179 737 ARMADILLO BTB ARABIDOPSIS no no 0.884 0.664 0.632 1e-172
P0CM60 630 Vacuolar protein 8 OS=Cry yes no 0.633 0.557 0.28 9e-25
P0CM61 630 Vacuolar protein 8 OS=Cry N/A no 0.633 0.557 0.28 9e-25
Q4WVW4578 Vacuolar protein 8 OS=Neo yes no 0.516 0.494 0.314 1e-22
Q4I1B1559 Vacuolar protein 8 OS=Gib yes no 0.638 0.633 0.301 2e-22
Q2U5T5578 Vacuolar protein 8 OS=Asp yes no 0.516 0.494 0.311 4e-22
Q6FJV1582 Vacuolar protein 8 OS=Can yes no 0.518 0.493 0.299 1e-20
P39968578 Vacuolar protein 8 OS=Sac yes no 0.507 0.486 0.294 5e-20
Q6CX49579 Vacuolar protein 8 OS=Klu yes no 0.5 0.478 0.296 1e-19
>sp|B9DHT4|ARIA_ARATH ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2 Back     alignment and function desciption
 Score =  842 bits (2176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/548 (80%), Positives = 489/548 (89%), Gaps = 13/548 (2%)

Query: 3   PQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQ 62
           P+RR+G S PERKGQKRKL+E          ++ REIS+ S     +D  QALLSEV+AQ
Sbjct: 5   PERREGRSFPERKGQKRKLEEGAA------AVEDREISAVS-----TDGGQALLSEVAAQ 53

Query: 63  VNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEAD 122
           V+VLN+ FSW E+DRAAAKRAT VLAELAKNE++VN IV+GGAVPAL+ HLQAPP ++ D
Sbjct: 54  VSVLNSAFSWQESDRAAAKRATQVLAELAKNEDLVNVIVDGGAVPALMTHLQAPPYNDGD 113

Query: 123 RNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182
              KP+EHEVEKGSAFALGLLA+KPE+Q+LIVD GAL HLVNLLKR+ D + SRAVNSVI
Sbjct: 114 LAEKPYEHEVEKGSAFALGLLAIKPEYQKLIVDKGALPHLVNLLKRNKDGSSSRAVNSVI 173

Query: 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 242
           RRAADAITNLAHENSSIKTRVR+EGGIPPLVELLEF+D+KVQRAAAGALRTLAFKND+NK
Sbjct: 174 RRAADAITNLAHENSSIKTRVRVEGGIPPLVELLEFSDSKVQRAAAGALRTLAFKNDDNK 233

Query: 243 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
           NQIVECNALPTLILML SED+AIHYEAVGVIGNLVHSSP+IKKEVL AGALQPVIGLLSS
Sbjct: 234 NQIVECNALPTLILMLGSEDAAIHYEAVGVIGNLVHSSPHIKKEVLTAGALQPVIGLLSS 293

Query: 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
           CC ESQREAALLLGQFA+TDSDCKVHIVQRGAVRPLIEMLQSPDVQL+EMSAFALGRLAQ
Sbjct: 294 CCPESQREAALLLGQFASTDSDCKVHIVQRGAVRPLIEMLQSPDVQLKEMSAFALGRLAQ 353

Query: 363 DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD 422
           D HNQAGIAH+GGL PLLKLLDS+NGSLQHNAAFALYGLADNEDNV+DFIRVGG+QKLQD
Sbjct: 354 DAHNQAGIAHSGGLGPLLKLLDSRNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQKLQD 413

Query: 423 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR 482
           GEFIVQATKDCV+KTLKRLEEKIHGRVL HLLYLMR++EK +QRRVALALAHLCSP+DQR
Sbjct: 414 GEFIVQATKDCVSKTLKRLEEKIHGRVLRHLLYLMRISEKSIQRRVALALAHLCSPEDQR 473

Query: 483 TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVRFKNG 542
           TIFID  GLELLLGLLGS N KQQLDGA AL+KLANK+  LS VDAAPPSPT +V     
Sbjct: 474 TIFIDDNGLELLLGLLGSLNTKQQLDGAAALYKLANKSMALSPVDAAPPSPTQRVYLGEQ 533

Query: 543 FLH--TLS 548
           +++  TLS
Sbjct: 534 YVNNATLS 541
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Acts as a positive regulator of ABA response via the modulation of the transcriptional activity of ABF2, a transcription factor which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. Negative regulator of seed germination and young seedling growth.
Arabidopsis thaliana (taxid: 3702)
>sp|B7U179|ABAP1_ARATH ARMADILLO BTB ARABIDOPSIS PROTEIN 1 OS=Arabidopsis thaliana GN=ABAP1 PE=1 SV=1 Back     alignment and function description
>sp|P0CM60|VAC8_CRYNJ Vacuolar protein 8 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=VAC8 PE=3 SV=1 Back     alignment and function description
>sp|P0CM61|VAC8_CRYNB Vacuolar protein 8 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=VAC8 PE=3 SV=1 Back     alignment and function description
>sp|Q4WVW4|VAC8_ASPFU Vacuolar protein 8 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=vac8 PE=3 SV=1 Back     alignment and function description
>sp|Q4I1B1|VAC8_GIBZE Vacuolar protein 8 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=VAC8 PE=3 SV=4 Back     alignment and function description
>sp|Q2U5T5|VAC8_ASPOR Vacuolar protein 8 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=vac8 PE=3 SV=1 Back     alignment and function description
>sp|Q6FJV1|VAC8_CANGA Vacuolar protein 8 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=VAC8 PE=3 SV=3 Back     alignment and function description
>sp|P39968|VAC8_YEAST Vacuolar protein 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VAC8 PE=1 SV=3 Back     alignment and function description
>sp|Q6CX49|VAC8_KLULA Vacuolar protein 8 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=VAC8 PE=3 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query554
255552325 719 protein binding protein, putative [Ricin 0.985 0.759 0.861 0.0
449432712 703 PREDICTED: ARM REPEAT PROTEIN INTERACTIN 0.963 0.759 0.852 0.0
225432592 705 PREDICTED: ARM REPEAT PROTEIN INTERACTIN 0.963 0.757 0.855 0.0
225432594 711 PREDICTED: ARM REPEAT PROTEIN INTERACTIN 0.963 0.751 0.846 0.0
224102035 720 predicted protein [Populus trichocarpa] 0.976 0.751 0.830 0.0
224108083 693 predicted protein [Populus trichocarpa] 0.980 0.783 0.818 0.0
356536027 707 PREDICTED: ARM REPEAT PROTEIN INTERACTIN 0.971 0.760 0.816 0.0
356575815 707 PREDICTED: ARM REPEAT PROTEIN INTERACTIN 0.971 0.760 0.814 0.0
147790059 726 hypothetical protein VITISV_012185 [Viti 0.940 0.717 0.833 0.0
356497472 706 PREDICTED: ARM REPEAT PROTEIN INTERACTIN 0.967 0.759 0.818 0.0
>gi|255552325|ref|XP_002517207.1| protein binding protein, putative [Ricinus communis] gi|223543842|gb|EEF45370.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  904 bits (2335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/554 (86%), Positives = 503/554 (90%), Gaps = 8/554 (1%)

Query: 1   MDPQRRQGPSV--PERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSE 58
           M+PQR Q      PERKGQKRKL+EE     EQQ++     ++++A     DARQALL E
Sbjct: 1   MEPQRSQSKDQGRPERKGQKRKLEEEIED--EQQEISASATAAAAAAVPFGDARQALLYE 58

Query: 59  VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPT 118
           V++QVN+LN+TFSW EADRAAAKRA HVLAE AKNEE+VN IVEGGAVPALVKHLQAPP+
Sbjct: 59  VASQVNILNSTFSWNEADRAAAKRAIHVLAEFAKNEELVNVIVEGGAVPALVKHLQAPPS 118

Query: 119 S--EADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSR 176
           S  E DR+ KPFEHEVEKGSAFALGLLAVKPEHQQLIVD GALSHLV LLKRH D + SR
Sbjct: 119 SSSEVDRSTKPFEHEVEKGSAFALGLLAVKPEHQQLIVDIGALSHLVELLKRHKDGSVSR 178

Query: 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236
           AVNSVIRRAADAITNLAHENSSIKTRVR+EGGIPPLVELLEF DTKVQRAAAGALRTLAF
Sbjct: 179 AVNSVIRRAADAITNLAHENSSIKTRVRVEGGIPPLVELLEFVDTKVQRAAAGALRTLAF 238

Query: 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296
           KNDENK QIVECNALPTLILMLRSED+AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV
Sbjct: 239 KNDENKKQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 298

Query: 297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFA 356
           IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV+PLIEMLQSPDVQLREMSAFA
Sbjct: 299 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSPDVQLREMSAFA 358

Query: 357 LGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 416
           LGRLAQD+HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV+DFIRVGG
Sbjct: 359 LGRLAQDLHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGG 418

Query: 417 VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 476
           VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL+HLLYLMRV EK VQRRVALALAHLC
Sbjct: 419 VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLHHLLYLMRVTEKAVQRRVALALAHLC 478

Query: 477 SPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQ 536
           SPDDQRTIFID  GLELLLGLLGST+PKQQLDGAVAL+KLANKA TLS VDAAPPSPTPQ
Sbjct: 479 SPDDQRTIFIDNNGLELLLGLLGSTSPKQQLDGAVALYKLANKAATLSPVDAAPPSPTPQ 538

Query: 537 VRFKNGFLH--TLS 548
           V     F++  TLS
Sbjct: 539 VYLGEQFVNNATLS 552

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449432712|ref|XP_004134143.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225432592|ref|XP_002281388.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform 1 [Vitis vinifera] gi|297737016|emb|CBI26217.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225432594|ref|XP_002281401.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224102035|ref|XP_002312519.1| predicted protein [Populus trichocarpa] gi|222852339|gb|EEE89886.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108083|ref|XP_002314713.1| predicted protein [Populus trichocarpa] gi|222863753|gb|EEF00884.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356536027|ref|XP_003536542.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Glycine max] Back     alignment and taxonomy information
>gi|356575815|ref|XP_003556032.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Glycine max] Back     alignment and taxonomy information
>gi|147790059|emb|CAN75981.1| hypothetical protein VITISV_012185 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356497472|ref|XP_003517584.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query554
TAIR|locus:2150295 710 ARIA "ARM repeat protein inter 0.965 0.753 0.786 1.3e-219
TAIR|locus:2179842 737 ABAP1 "ARMADILLO BTB protein 1 0.884 0.664 0.619 9.8e-151
ASPGD|ASPL0000008980579 AN12408 [Emericella nidulans ( 0.631 0.604 0.296 8.6e-26
SGD|S000000739578 VAC8 "Phosphorylated and palmi 0.633 0.607 0.282 7.2e-25
CGD|CAL0001835585 VAC8 [Candida albicans (taxid: 0.617 0.584 0.291 6.5e-23
UNIPROTKB|Q59MN0585 VAC8 "Vacuolar protein 8" [Can 0.617 0.584 0.291 6.5e-23
POMBASE|SPBC354.14c550 vac8 "vacuolar protein Vac8 (p 0.622 0.627 0.284 4.3e-22
TAIR|locus:2055033930 ARABIDILLO-1 "AT2G44900" [Arab 0.570 0.339 0.285 8.1e-18
TAIR|locus:2103351928 ARABIDILLO-2 "AT3G60350" [Arab 0.568 0.339 0.281 6.1e-17
TAIR|locus:2130699472 AT4G16490 "AT4G16490" [Arabido 0.445 0.523 0.288 1.6e-14
TAIR|locus:2150295 ARIA "ARM repeat protein interacting with ABF2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2121 (751.7 bits), Expect = 1.3e-219, P = 1.3e-219
 Identities = 431/548 (78%), Positives = 475/548 (86%)

Query:     3 PQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREIXXXXXXXXXXDARQALLSEVSAQ 62
             P+RR+G S PERKGQKRKL+E          ++ REI          D  QALLSEV+AQ
Sbjct:     5 PERREGRSFPERKGQKRKLEEGAAA------VEDREISAVST-----DGGQALLSEVAAQ 53

Query:    63 VNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEAD 122
             V+VLN+ FSW E+DRAAAKRAT VLAELAKNE++VN IV+GGAVPAL+ HLQAPP ++ D
Sbjct:    54 VSVLNSAFSWQESDRAAAKRATQVLAELAKNEDLVNVIVDGGAVPALMTHLQAPPYNDGD 113

Query:   123 RNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182
                KP+EHEVEKGSAFALGLLA+KPE+Q+LIVD GAL HLVNLLKR+ D + SRAVNSVI
Sbjct:   114 LAEKPYEHEVEKGSAFALGLLAIKPEYQKLIVDKGALPHLVNLLKRNKDGSSSRAVNSVI 173

Query:   183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 242
             RRAADAITNLAHENSSIKTRVR+EGGIPPLVELLEF+D+KVQRAAAGALRTLAFKND+NK
Sbjct:   174 RRAADAITNLAHENSSIKTRVRVEGGIPPLVELLEFSDSKVQRAAAGALRTLAFKNDDNK 233

Query:   243 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
             NQIVECNALPTLILML SED+AIHYEAVGVIGNLVHSSP+IKKEVL AGALQPVIGLLSS
Sbjct:   234 NQIVECNALPTLILMLGSEDAAIHYEAVGVIGNLVHSSPHIKKEVLTAGALQPVIGLLSS 293

Query:   303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
             CC ESQREAALLLGQFA+TDSDCKVHIVQRGAVRPLIEMLQSPDVQL+EMSAFALGRLAQ
Sbjct:   294 CCPESQREAALLLGQFASTDSDCKVHIVQRGAVRPLIEMLQSPDVQLKEMSAFALGRLAQ 353

Query:   363 DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD 422
             D HNQAGIAH+GGL PLLKLLDS+NGSLQHNAAFALYGLADNEDNV+DFIRVGG+QKLQD
Sbjct:   354 DAHNQAGIAHSGGLGPLLKLLDSRNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQKLQD 413

Query:   423 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR 482
             GEFIVQATKDCV+KTLKRLEEKIHGRVL HLLYLMR++EK +QRRVALALAHLCSP+DQR
Sbjct:   414 GEFIVQATKDCVSKTLKRLEEKIHGRVLRHLLYLMRISEKSIQRRVALALAHLCSPEDQR 473

Query:   483 TIFIDXXXXXXXXXXXXSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVRFKNG 542
             TIFID            S N KQQLDGA AL+KLANK+  LS VDAAPPSPT +V     
Sbjct:   474 TIFIDDNGLELLLGLLGSLNTKQQLDGAAALYKLANKSMALSPVDAAPPSPTQRVYLGEQ 533

Query:   543 FLH--TLS 548
             +++  TLS
Sbjct:   534 YVNNATLS 541
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005515 "protein binding" evidence=IPI
GO:0005886 "plasma membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP
GO:0009737 "response to abscisic acid stimulus" evidence=IEP;IMP
GO:0010187 "negative regulation of seed germination" evidence=IMP
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
TAIR|locus:2179842 ABAP1 "ARMADILLO BTB protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000008980 AN12408 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000000739 VAC8 "Phosphorylated and palmitoylated vacuolar membrane protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0001835 VAC8 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59MN0 VAC8 "Vacuolar protein 8" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
POMBASE|SPBC354.14c vac8 "vacuolar protein Vac8 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TAIR|locus:2055033 ARABIDILLO-1 "AT2G44900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103351 ARABIDILLO-2 "AT3G60350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130699 AT4G16490 "AT4G16490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B9DHT4ARIA_ARATHNo assigned EC number0.80830.96570.7535yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 2e-21
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 3e-20
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 4e-16
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 6e-15
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 3e-13
COG5064526 COG5064, SRP1, Karyopherin (importin) alpha [Intra 3e-11
PLN03200 2102 PLN03200, PLN03200, cellulose synthase-interactive 1e-10
COG5064526 COG5064, SRP1, Karyopherin (importin) alpha [Intra 2e-08
PLN03200 2102 PLN03200, PLN03200, cellulose synthase-interactive 6e-08
PLN03200 2102 PLN03200, PLN03200, cellulose synthase-interactive 8e-08
PLN03200 2102 PLN03200, PLN03200, cellulose synthase-interactive 2e-06
COG1413335 COG1413, COG1413, FOG: HEAT repeat [Energy product 3e-06
smart0018541 smart00185, ARM, Armadillo/beta-catenin-like repea 1e-05
pfam0051441 pfam00514, Arm, Armadillo/beta-catenin-like repeat 1e-05
pfam01602522 pfam01602, Adaptin_N, Adaptin N terminal region 1e-05
smart0018541 smart00185, ARM, Armadillo/beta-catenin-like repea 3e-05
COG5064526 COG5064, SRP1, Karyopherin (importin) alpha [Intra 4e-05
pfam0051441 pfam00514, Arm, Armadillo/beta-catenin-like repeat 5e-05
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 6e-05
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 1e-04
PLN03200 2102 PLN03200, PLN03200, cellulose synthase-interactive 1e-04
smart0018541 smart00185, ARM, Armadillo/beta-catenin-like repea 0.002
pfam0051441 pfam00514, Arm, Armadillo/beta-catenin-like repeat 0.002
pfam0051441 pfam00514, Arm, Armadillo/beta-catenin-like repeat 0.002
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information 
 Score = 89.3 bits (222), Expect = 2e-21
 Identities = 43/118 (36%), Positives = 62/118 (52%)

Query: 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262
           V   GG+P LV LL  +D  VQR AA AL  L+  N++N   +VE   LP L+ +L+SED
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62

Query: 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320
             +   A+  + NL     + K  VL AG +  ++ LL S   + Q+ A   L   A+
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat Back     alignment and domain information
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information
>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat Back     alignment and domain information
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 554
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 100.0
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 100.0
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 100.0
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 100.0
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 100.0
KOG4224550 consensus Armadillo repeat protein VAC8 required f 100.0
KOG4224550 consensus Armadillo repeat protein VAC8 required f 100.0
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 100.0
PF05804708 KAP: Kinesin-associated protein (KAP) 99.95
PF05804708 KAP: Kinesin-associated protein (KAP) 99.95
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 99.89
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 99.88
KOG1048717 consensus Neural adherens junction protein Plakoph 99.84
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 99.81
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.79
KOG4199461 consensus Uncharacterized conserved protein [Funct 99.79
KOG1048717 consensus Neural adherens junction protein Plakoph 99.79
KOG4199461 consensus Uncharacterized conserved protein [Funct 99.79
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 99.78
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.76
KOG1222791 consensus Kinesin associated protein KAP [Intracel 99.73
KOG1222791 consensus Kinesin associated protein KAP [Intracel 99.66
KOG1293 678 consensus Proteins containing armadillo/beta-caten 99.6
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.59
PRK09687280 putative lyase; Provisional 99.57
PRK09687280 putative lyase; Provisional 99.56
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 99.55
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 99.53
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 99.51
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.49
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.44
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 99.43
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.42
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 99.41
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 99.4
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 99.39
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.36
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 99.36
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.35
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 99.35
KOG1293 678 consensus Proteins containing armadillo/beta-caten 99.31
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.26
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 99.24
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.23
PTZ00429 746 beta-adaptin; Provisional 99.17
KOG3678 832 consensus SARM protein (with sterile alpha and arm 99.17
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 99.12
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 99.12
PTZ00429 746 beta-adaptin; Provisional 99.1
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 99.1
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 99.08
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.05
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 99.01
KOG2973353 consensus Uncharacterized conserved protein [Funct 99.0
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 98.99
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 98.98
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 98.98
KOG3678 832 consensus SARM protein (with sterile alpha and arm 98.98
KOG4413524 consensus 26S proteasome regulatory complex, subun 98.95
KOG0212 675 consensus Uncharacterized conserved protein [Funct 98.93
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 98.89
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 98.87
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 98.84
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 98.83
KOG4413 524 consensus 26S proteasome regulatory complex, subun 98.74
KOG1824 1233 consensus TATA-binding protein-interacting protein 98.73
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 98.71
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 98.7
KOG0213 1172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.69
KOG1242569 consensus Protein containing adaptin N-terminal re 98.68
KOG2973353 consensus Uncharacterized conserved protein [Funct 98.67
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 98.66
PF05536543 Neurochondrin: Neurochondrin 98.65
KOG0212 675 consensus Uncharacterized conserved protein [Funct 98.65
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 98.63
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 98.62
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.61
KOG4646173 consensus Uncharacterized conserved protein, conta 98.55
TIGR02270410 conserved hypothetical protein. Members are found 98.53
PF05536543 Neurochondrin: Neurochondrin 98.51
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 98.5
KOG1824 1233 consensus TATA-binding protein-interacting protein 98.5
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 98.49
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 98.47
KOG4646173 consensus Uncharacterized conserved protein, conta 98.46
KOG1242569 consensus Protein containing adaptin N-terminal re 98.43
KOG17892235 consensus Endocytosis protein RME-8, contains DnaJ 98.43
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 98.42
COG5369743 Uncharacterized conserved protein [Function unknow 98.36
TIGR02270410 conserved hypothetical protein. Members are found 98.32
COG5369743 Uncharacterized conserved protein [Function unknow 98.31
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 98.28
KOG1789 2235 consensus Endocytosis protein RME-8, contains DnaJ 98.26
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 98.26
KOG2734536 consensus Uncharacterized conserved protein [Funct 98.21
KOG2734536 consensus Uncharacterized conserved protein [Funct 98.2
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.19
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.19
KOG2259 823 consensus Uncharacterized conserved protein [Funct 98.17
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.17
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.15
COG1413335 FOG: HEAT repeat [Energy production and conversion 98.13
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 98.12
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 98.12
KOG2259 823 consensus Uncharacterized conserved protein [Funct 98.11
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 98.07
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 98.06
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.05
COG1413335 FOG: HEAT repeat [Energy production and conversion 98.01
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 97.97
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 97.95
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.93
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 97.92
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.91
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.89
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 97.89
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 97.87
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 97.86
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 97.83
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 97.77
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 97.69
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 97.68
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.67
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.67
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 97.66
KOG3036293 consensus Protein involved in cell differentiation 97.63
KOG0567289 consensus HEAT repeat-containing protein [General 97.61
PRK14707 2710 hypothetical protein; Provisional 97.61
KOG0567289 consensus HEAT repeat-containing protein [General 97.55
COG5096 757 Vesicle coat complex, various subunits [Intracellu 97.52
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 97.45
PRK14707 2710 hypothetical protein; Provisional 97.44
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 97.43
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 97.35
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 97.33
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 97.33
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 97.3
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 97.28
PF11841160 DUF3361: Domain of unknown function (DUF3361) 97.27
PF06025379 DUF913: Domain of Unknown Function (DUF913); Inter 97.26
PF07814361 WAPL: Wings apart-like protein regulation of heter 97.23
KOG2032533 consensus Uncharacterized conserved protein [Funct 97.22
KOG4535728 consensus HEAT and armadillo repeat-containing pro 97.22
PF11841160 DUF3361: Domain of unknown function (DUF3361) 97.19
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 97.18
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 97.17
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 97.14
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 97.13
COG5096 757 Vesicle coat complex, various subunits [Intracellu 97.12
PF13764 802 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 97.06
KOG2062929 consensus 26S proteasome regulatory complex, subun 97.03
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 97.03
KOG3036293 consensus Protein involved in cell differentiation 97.0
KOG4535728 consensus HEAT and armadillo repeat-containing pro 97.0
PF06025379 DUF913: Domain of Unknown Function (DUF913); Inter 96.99
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 96.99
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 96.96
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 96.96
KOG4151748 consensus Myosin assembly protein/sexual cycle pro 96.93
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 96.93
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 96.87
KOG12481176 consensus Uncharacterized conserved protein [Funct 96.76
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 96.75
PF07814361 WAPL: Wings apart-like protein regulation of heter 96.7
PF08045257 CDC14: Cell division control protein 14, SIN compo 96.67
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 96.66
PF08045257 CDC14: Cell division control protein 14, SIN compo 96.6
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 96.57
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 96.54
PF05004309 IFRD: Interferon-related developmental regulator ( 96.52
KOG4151748 consensus Myosin assembly protein/sexual cycle pro 96.5
KOG22741005 consensus Predicted importin 9 [Intracellular traf 96.5
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 96.47
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 96.44
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 96.43
KOG4653982 consensus Uncharacterized conserved protein [Funct 96.35
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 96.32
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 96.31
KOG4464532 consensus Signaling protein RIC-8/synembryn (regul 96.17
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 96.15
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.08
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 96.03
PF13764 802 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 95.96
PF05004309 IFRD: Interferon-related developmental regulator ( 95.92
KOG2999 713 consensus Regulator of Rac1, required for phagocyt 95.88
KOG1566342 consensus Conserved protein Mo25 [Function unknown 95.72
KOG4653982 consensus Uncharacterized conserved protein [Funct 95.69
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 95.63
PF04063192 DUF383: Domain of unknown function (DUF383); Inter 95.63
KOG2062 929 consensus 26S proteasome regulatory complex, subun 95.38
PF11701157 UNC45-central: Myosin-binding striated muscle asse 95.32
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 95.3
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 95.25
KOG2956516 consensus CLIP-associating protein [General functi 95.2
KOG1243690 consensus Protein kinase [General function predict 95.19
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 95.19
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 95.13
KOG3665699 consensus ZYG-1-like serine/threonine protein kina 95.11
PF04063192 DUF383: Domain of unknown function (DUF383); Inter 95.0
KOG1243690 consensus Protein kinase [General function predict 94.95
PF1466873 RICTOR_V: Rapamycin-insensitive companion of mTOR, 94.94
KOG04141251 consensus Chromosome condensation complex Condensi 94.77
KOG2025 892 consensus Chromosome condensation complex Condensi 94.73
PF11701157 UNC45-central: Myosin-binding striated muscle asse 94.67
COG5116926 RPN2 26S proteasome regulatory complex component [ 94.53
KOG04141251 consensus Chromosome condensation complex Condensi 94.39
PF1466873 RICTOR_V: Rapamycin-insensitive companion of mTOR, 94.21
COG5209315 RCD1 Uncharacterized protein involved in cell diff 94.18
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 94.17
KOG2999 713 consensus Regulator of Rac1, required for phagocyt 94.16
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 94.02
KOG2137700 consensus Protein kinase [Signal transduction mech 93.91
KOG2137 700 consensus Protein kinase [Signal transduction mech 93.74
PF06371187 Drf_GBD: Diaphanous GTPase-binding Domain; InterPr 93.5
KOG2956516 consensus CLIP-associating protein [General functi 93.48
KOG1820 815 consensus Microtubule-associated protein [Cytoskel 93.17
KOG2025 892 consensus Chromosome condensation complex Condensi 93.16
COG5209315 RCD1 Uncharacterized protein involved in cell diff 93.08
KOG1820815 consensus Microtubule-associated protein [Cytoskel 93.07
KOG1566342 consensus Conserved protein Mo25 [Function unknown 93.01
KOG1788 2799 consensus Uncharacterized conserved protein [Funct 92.88
PF14500262 MMS19_N: Dos2-interacting transcription regulator 92.5
KOG2032533 consensus Uncharacterized conserved protein [Funct 92.43
PF1036392 DUF2435: Protein of unknown function (DUF2435) 92.41
KOG4464 532 consensus Signaling protein RIC-8/synembryn (regul 92.33
COG5116 926 RPN2 26S proteasome regulatory complex component [ 92.14
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 92.08
COG5656 970 SXM1 Importin, protein involved in nuclear import 92.07
KOG2933334 consensus Uncharacterized conserved protein [Funct 91.45
PF06371187 Drf_GBD: Diaphanous GTPase-binding Domain; InterPr 91.38
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 91.24
PF11707330 Npa1: Ribosome 60S biogenesis N-terminal; InterPro 91.11
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 91.06
COG50981128 Chromosome condensation complex Condensin, subunit 91.04
KOG3665699 consensus ZYG-1-like serine/threonine protein kina 91.03
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 90.89
PF08324268 PUL: PUL domain; InterPro: IPR013535 The PUL (afte 90.76
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 90.53
KOG2933334 consensus Uncharacterized conserved protein [Funct 90.49
PF12031257 DUF3518: Domain of unknown function (DUF3518); Int 90.41
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 90.36
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 90.28
KOG2611 698 consensus Neurochondrin/leucine-rich protein (Neur 90.02
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 89.98
PF08324268 PUL: PUL domain; InterPro: IPR013535 The PUL (afte 89.46
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 88.67
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 88.63
KOG1992 960 consensus Nuclear export receptor CSE1/CAS (import 88.56
PF1036392 DUF2435: Protein of unknown function (DUF2435) 88.41
KOG1788 2799 consensus Uncharacterized conserved protein [Funct 87.99
PF13251182 DUF4042: Domain of unknown function (DUF4042) 87.64
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 87.51
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 87.25
KOG0301745 consensus Phospholipase A2-activating protein (con 86.28
PF13251182 DUF4042: Domain of unknown function (DUF4042) 86.18
PF1472698 RTTN_N: Rotatin, an armadillo repeat protein, cent 85.75
KOG0413 1529 consensus Uncharacterized conserved protein relate 85.65
PRK09169 2316 hypothetical protein; Validated 85.64
KOG0413 1529 consensus Uncharacterized conserved protein relate 85.62
PF12031257 DUF3518: Domain of unknown function (DUF3518); Int 85.43
PF11707330 Npa1: Ribosome 60S biogenesis N-terminal; InterPro 85.18
PF08167165 RIX1: rRNA processing/ribosome biogenesis 85.14
smart00638574 LPD_N Lipoprotein N-terminal Domain. 85.09
smart00638574 LPD_N Lipoprotein N-terminal Domain. 84.7
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 84.67
PF1472698 RTTN_N: Rotatin, an armadillo repeat protein, cent 84.22
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 84.19
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 83.65
COG5656970 SXM1 Importin, protein involved in nuclear import 83.16
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 82.29
cd03561133 VHS VHS domain family; The VHS domain is present i 82.14
PF08167165 RIX1: rRNA processing/ribosome biogenesis 82.06
KOG2676478 consensus Uncharacterized conserved protein [Funct 81.62
KOG2011 1048 consensus Sister chromatid cohesion complex Cohesi 80.83
PF04869312 Uso1_p115_head: Uso1 / p115 like vesicle tethering 80.71
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 80.28
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 80.24
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-38  Score=351.60  Aligned_cols=447  Identities=21%  Similarity=0.217  Sum_probs=365.5

Q ss_pred             HHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHH
Q 008781           58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS  136 (554)
Q Consensus        58 ~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a  136 (554)
                      .|+.++..|.+.      ++..+..|+++|.+++. +++.+..+++.|+||.|+++|++++.           +.+|+.|
T Consensus       190 aVp~LV~LLsS~------d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~-----------~~VRE~A  252 (2102)
T PLN03200        190 GVDILVKLLSSG------NSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNE-----------VSVRAEA  252 (2102)
T ss_pred             CHHHHHHHHcCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCC-----------hHHHHHH
Confidence            567777776543      56789999999988887 58899999999999999999986543           2899999


Q ss_pred             HHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCc-cccchhHHHHHHHHHHHHHhhcCch----------------
Q 008781          137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSN-CSRAVNSVIRRAADAITNLAHENSS----------------  198 (554)
Q Consensus       137 ~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~-~~~~~~~~~~~a~~~L~~L~~~~~~----------------  198 (554)
                      +++|++|+ +++++++.+++.|+++.|++++..+.... .......+++.|+|+|.|+|.+.+.                
T Consensus       253 A~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~  332 (2102)
T PLN03200        253 AGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPA  332 (2102)
T ss_pred             HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHH
Confidence            99999999 78999999999999999999998654211 0001116788899999998873211                


Q ss_pred             ---------------------------------------------------------------hHHHHHhcCChHHHHHh
Q 008781          199 ---------------------------------------------------------------IKTRVRMEGGIPPLVEL  215 (554)
Q Consensus       199 ---------------------------------------------------------------~~~~~~~~~~i~~L~~l  215 (554)
                                                                                     .+..+.+.++++.|+.+
T Consensus       333 ~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~L  412 (2102)
T PLN03200        333 PIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGL  412 (2102)
T ss_pred             HHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhh
Confidence                                                                           00112223445556666


Q ss_pred             hcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHH
Q 008781          216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP  295 (554)
Q Consensus       216 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~  295 (554)
                      +...+.+++..++++|++++.++.+.++.+.+.|+++.|+++|.+++..++..++++|++++.++++++..+++.|+++.
T Consensus       413 L~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~  492 (2102)
T PLN03200        413 ITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPP  492 (2102)
T ss_pred             hccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence            66667789999999999999888888999999999999999999999999999999999999988888899999999999


Q ss_pred             HHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcc--------
Q 008781          296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ--------  367 (554)
Q Consensus       296 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~--------  367 (554)
                      |+++|.+++..++++|+|+|+|++..+++.+..+.+.|+++.|+.+|+++++.+++.++++|.|++.+.++.        
T Consensus       493 LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~L  572 (2102)
T PLN03200        493 LVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTAL  572 (2102)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            999999999999999999999999765566666668899999999999999999999999999997433221        


Q ss_pred             ------------------------------hhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCC-cchhHHHhhCc
Q 008781          368 ------------------------------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE-DNVADFIRVGG  416 (554)
Q Consensus       368 ------------------------------~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~  416 (554)
                                                    ......|+++.|.+++.+++..+++.|+++|.+++... +....++..|+
T Consensus       573 Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~aga  652 (2102)
T PLN03200        573 LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI  652 (2102)
T ss_pred             hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Confidence                                          00123689999999999999999999999999998754 45677889999


Q ss_pred             cccccchhhhhhh-hHHHHHHHHH---------HHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 008781          417 VQKLQDGEFIVQA-TKDCVAKTLK---------RLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI  486 (554)
Q Consensus       417 i~~L~~~~~~~~~-~~~~~~~~~~---------~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  486 (554)
                      +++|+.....-.. .+.-.+.++.         +.......++++.|+.++++.+..++..++.+|.|++..++.+..+.
T Consensus       653 IpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~  732 (2102)
T PLN03200        653 INPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEAL  732 (2102)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHH
Confidence            9998774432111 1111122221         22234678899999999999999999999999999999999998899


Q ss_pred             HcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781          487 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  521 (554)
Q Consensus       487 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~  521 (554)
                      ..|+++.|+.++.+++++.|+.|+++|.+|+++.+
T Consensus       733 ~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~  767 (2102)
T PLN03200        733 AEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP  767 (2102)
T ss_pred             hcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999998765

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2734 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2734 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing Back     alignment and domain information
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D Back     alignment and domain information
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] Back     alignment and domain information
>KOG1566 consensus Conserved protein Mo25 [Function unknown] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 Back     alignment and domain information
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG1566 consensus Conserved protein Mo25 [Function unknown] Back     alignment and domain information
>KOG1788 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG1788 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PRK09169 hypothetical protein; Validated Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG2676 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region [] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
4hxt_A252 Crystal Structure Of Engineered Protein. Northeast 3e-19
4hxt_A252 Crystal Structure Of Engineered Protein. Northeast 4e-10
4ba3_A496 Mimp_alphadibb_a89nls Length = 496 1e-14
4ba3_A496 Mimp_alphadibb_a89nls Length = 496 3e-06
3rz9_A510 Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt 1e-14
3rz9_A510 Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt 3e-06
1ial_A453 Importin Alpha, Mouse Length = 453 1e-14
1ial_A453 Importin Alpha, Mouse Length = 453 2e-06
1ejl_I460 Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti 1e-14
1ejl_I460 Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti 3e-06
3ukw_B510 Mouse Importin Alpha: Bimax1 Peptide Complex Length 1e-14
3ukw_B510 Mouse Importin Alpha: Bimax1 Peptide Complex Length 4e-06
4htv_A509 Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex 1e-14
4htv_A509 Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex 4e-06
3tpo_A529 Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP 1e-14
3tpo_A529 Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP 1e-06
2c1m_A424 Nup50:importin-Alpha Complex Length = 424 1e-14
2c1m_A424 Nup50:importin-Alpha Complex Length = 424 3e-06
2ynr_A461 Mimp_alphadibb_b54nls Length = 461 1e-14
2ynr_A461 Mimp_alphadibb_b54nls Length = 461 4e-06
3btr_C427 Ar-Nls:importin-Alpha Complex Length = 427 1e-14
3btr_C427 Ar-Nls:importin-Alpha Complex Length = 427 3e-06
1q1s_C466 Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid 1e-14
1q1s_C466 Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid 4e-06
1y2a_C428 Structure Of Mammalian Importin Bound To The Non-Cl 1e-14
1y2a_C428 Structure Of Mammalian Importin Bound To The Non-Cl 3e-06
3ve6_A426 Crystal Structure Analysis Of Venezuelan Equine Enc 1e-14
3ve6_A426 Crystal Structure Analysis Of Venezuelan Equine Enc 3e-06
3l3q_A427 Mouse Importin Alpha-Peptm Nls Peptide Complex Leng 1e-14
3l3q_A427 Mouse Importin Alpha-Peptm Nls Peptide Complex Leng 4e-06
3tpm_A422 Crystal Structure Of Mal Rpel Domain In Complex Wit 2e-14
3tpm_A422 Crystal Structure Of Mal Rpel Domain In Complex Wit 4e-06
3fex_C467 Crystal Structure Of The Cbc-Importin Alpha Complex 4e-13
3fex_C 467 Crystal Structure Of The Cbc-Importin Alpha Complex 6e-07
4db8_A252 Designed Armadillo-Repeat Protein Length = 252 8e-13
4b8j_A528 Rimp_alpha1a Length = 528 2e-11
4b8j_A528 Rimp_alpha1a Length = 528 4e-08
2yns_A490 Rimp_alpha_b54nls Length = 490 2e-11
2yns_A490 Rimp_alpha_b54nls Length = 490 5e-08
4db9_A210 Designed Armadillo Repeat Protein (Yiiim3aiii) Leng 1e-10
4db6_A210 Designed Armadillo Repeat Protein (Yiiim3aii) Lengt 2e-10
4db6_A210 Designed Armadillo Repeat Protein (Yiiim3aii) Lengt 3e-10
4dba_A210 Designed Armadillo Repeat Protein (Yiim3aii) Length 1e-09
3l6x_A 584 Crystal Structure Of P120 Catenin In Complex With E 2e-08
2jdq_A450 C-Terminal Domain Of Influenza A Virus Polymerase P 9e-08
2jdq_A450 C-Terminal Domain Of Influenza A Virus Polymerase P 4e-04
3tj3_A447 Structure Of Importin A5 Bound To The N-Terminus Of 9e-08
3tj3_A447 Structure Of Importin A5 Bound To The N-Terminus Of 3e-04
1un0_A443 Crystal Structure Of Yeast Karyopherin (Importin) A 1e-07
1un0_A443 Crystal Structure Of Yeast Karyopherin (Importin) A 1e-05
2c1t_A454 Structure Of The Kap60p:nup2 Complex Length = 454 2e-07
2c1t_A454 Structure Of The Kap60p:nup2 Complex Length = 454 1e-05
1ee5_A424 Yeast Karyopherin (Importin) Alpha In A Complex Wit 2e-07
1ee5_A424 Yeast Karyopherin (Importin) Alpha In A Complex Wit 1e-05
1ee4_A423 Crystal Structure Of Yeast Karyopherin (Importin) A 2e-07
1ee4_A423 Crystal Structure Of Yeast Karyopherin (Importin) A 1e-05
1xm9_A457 Structure Of The Armadillo Repeat Domain Of Plakoph 2e-07
1wa5_B530 Crystal Structure Of The Exportin Cse1p Complexed W 8e-07
1bk6_A422 Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng 1e-06
1bk6_A422 Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng 1e-05
1bk5_A422 Karyopherin Alpha From Saccharomyces Cerevisiae Len 1e-06
1bk5_A422 Karyopherin Alpha From Saccharomyces Cerevisiae Len 1e-05
3tt9_A233 Crystal Structure Of The Stable Degradation Fragmen 2e-05
2z6g_A 780 Crystal Structure Of A Full-Length Zebrafish Beta-C 3e-05
3ltm_A211 Structure Of A New Family Of Artificial Alpha Helic 4e-05
3ltj_A201 Structure Of A New Family Of Artificial Alpha Helic 6e-05
4djs_A518 Structure Of Beta-Catenin In Complex With A Stapled 2e-04
1qz7_A533 Beta-Catenin Binding Domain Of Axin In Complex With 2e-04
2z6h_A 644 Crystal Structure Of Beta-Catenin Armadillo Repeat 2e-04
1luj_A514 Crystal Structure Of The Beta-CateninICAT COMPLEX L 2e-04
1jpw_A540 Crystal Structure Of A Human Tcf-4 BETA-Catenin Com 2e-04
1t08_A519 Crystal Structure Of Beta-CateninICAT HELICAL Domai 2e-04
3tx7_A527 Crystal Structure Of Lrh-1BETA-Catenin Complex Leng 2e-04
1g3j_A532 Crystal Structure Of The Xtcf3-CbdBETA-Catenin Arma 2e-04
1i7x_A538 Beta-CateninE-Cadherin Complex Length = 538 2e-04
2bct_A516 The Armadillo Repeat Region From Murine Beta-Cateni 2e-04
3ouw_A540 Structure Of Beta-Catenin With Lef-1 Length = 540 2e-04
2gl7_A 550 Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX 2e-04
1jdh_A529 Crystal Structure Of Beta-Catenin And Htcf-4 Length 2e-04
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 Back     alignment and structure 
Iteration: 1

 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 2/203 (0%)
Query: 197 SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 256
           S+IK  V   GG+  LV+LL  TD++VQ+ AA AL  +A   DE    IV+   +  L+ 
Sbjct: 35  SAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK 93
Query: 257 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316
           +L S DS +  EA   + N+        K ++ AG ++ ++ LL+S  SE Q+EAA  L 
Sbjct: 94  LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 153
Query: 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGG 375
             A+   +    IV  G V  L+++L S D ++++ +A AL  +A    +    I   GG
Sbjct: 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGG 213
Query: 376 LVPLLKLLDSKNGSLQHNAAFAL 398
           +  L KLL S +  +Q  A  AL
Sbjct: 214 VEVLQKLLTSTDSEVQKEAQRAL 236
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 Back     alignment and structure
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496 Back     alignment and structure
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496 Back     alignment and structure
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510 Back     alignment and structure
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510 Back     alignment and structure
>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453 Back     alignment and structure
>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453 Back     alignment and structure
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460 Back     alignment and structure
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460 Back     alignment and structure
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510 Back     alignment and structure
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510 Back     alignment and structure
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509 Back     alignment and structure
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509 Back     alignment and structure
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529 Back     alignment and structure
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529 Back     alignment and structure
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424 Back     alignment and structure
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424 Back     alignment and structure
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461 Back     alignment and structure
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461 Back     alignment and structure
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427 Back     alignment and structure
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427 Back     alignment and structure
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466 Back     alignment and structure
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466 Back     alignment and structure
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428 Back     alignment and structure
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428 Back     alignment and structure
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426 Back     alignment and structure
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426 Back     alignment and structure
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427 Back     alignment and structure
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427 Back     alignment and structure
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422 Back     alignment and structure
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422 Back     alignment and structure
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467 Back     alignment and structure
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467 Back     alignment and structure
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 Back     alignment and structure
>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528 Back     alignment and structure
>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528 Back     alignment and structure
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490 Back     alignment and structure
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490 Back     alignment and structure
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210 Back     alignment and structure
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210 Back     alignment and structure
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210 Back     alignment and structure
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210 Back     alignment and structure
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With E-Cadherin Length = 584 Back     alignment and structure
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450 Back     alignment and structure
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450 Back     alignment and structure
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447 Back     alignment and structure
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447 Back     alignment and structure
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443 Back     alignment and structure
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443 Back     alignment and structure
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454 Back     alignment and structure
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454 Back     alignment and structure
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424 Back     alignment and structure
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424 Back     alignment and structure
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423 Back     alignment and structure
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423 Back     alignment and structure
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1 Length = 457 Back     alignment and structure
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530 Back     alignment and structure
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422 Back     alignment and structure
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422 Back     alignment and structure
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422 Back     alignment and structure
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422 Back     alignment and structure
>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant Length = 233 Back     alignment and structure
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin Length = 780 Back     alignment and structure
>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal Repeat Proteins (Alpha-Rep) Based On Thermostable Heat-Like Repeats Length = 211 Back     alignment and structure
>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal Repeat Proteins (Alpha-Rep) Based On Thermostable Heat-Like Repeats Length = 201 Back     alignment and structure
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled Peptide Inhibitor Length = 518 Back     alignment and structure
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta- Catenin Length = 533 Back     alignment and structure
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region And Its C-Terminal Domain Length = 644 Back     alignment and structure
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX Length = 514 Back     alignment and structure
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex Length = 540 Back     alignment and structure
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL DomainUNPHOSPHORYLATED APC R3 Length = 519 Back     alignment and structure
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex Length = 527 Back     alignment and structure
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo Repeat Complex Length = 532 Back     alignment and structure
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex Length = 538 Back     alignment and structure
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 516 Back     alignment and structure
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1 Length = 540 Back     alignment and structure
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX Length = 550 Back     alignment and structure
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4 Length = 529 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 1e-72
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 2e-68
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 4e-56
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 6e-46
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 2e-40
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 6e-07
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 3e-70
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 4e-67
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 3e-47
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 7e-42
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 4e-27
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 9e-70
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 4e-65
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 1e-58
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 2e-55
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 7e-39
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 3e-21
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 3e-67
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 2e-50
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 1e-66
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 7e-47
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 2e-46
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 1e-38
3oqs_A 510 Importin subunit alpha-2; importin alpha, karyophe 2e-20
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 5e-66
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 4e-41
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 3e-38
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 1e-31
3nmw_A 354 APC variant protein; ARMADIILO repeats domain, cel 1e-10
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 3e-06
3nmz_A458 APC variant protein; protein-protein complex, arma 5e-65
3nmz_A458 APC variant protein; protein-protein complex, arma 6e-43
3nmz_A458 APC variant protein; protein-protein complex, arma 4e-41
3nmz_A458 APC variant protein; protein-protein complex, arma 1e-30
3nmz_A458 APC variant protein; protein-protein complex, arma 4e-26
3nmz_A458 APC variant protein; protein-protein complex, arma 2e-24
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 9e-64
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 5e-41
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 5e-29
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 4e-12
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 1e-58
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 2e-48
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 1e-43
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 3e-40
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 4e-06
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 6e-58
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 1e-43
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 4e-41
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 1e-30
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 3e-30
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-27
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 3e-40
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 2e-38
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 2e-34
3now_A 810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 3e-25
3now_A 810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 1e-11
3now_A 810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 6e-10
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 2e-37
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 1e-30
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 2e-24
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 8e-23
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 3e-16
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 2e-15
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 1e-04
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 2e-34
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 1e-29
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 2e-17
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 5e-17
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 9e-10
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 4e-34
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 3e-23
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 2e-18
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 4e-17
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 1e-11
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 7e-11
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 7e-33
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 3e-32
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 2e-26
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 1e-20
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 2e-13
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 4e-11
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 6e-20
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 7e-12
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 2e-09
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 4e-09
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 6e-14
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 2e-08
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 2e-06
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 3e-13
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 4e-08
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 1e-07
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 1e-06
2db0_A253 253AA long hypothetical protein; heat repeats, hel 5e-13
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 1e-12
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 2e-12
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 3e-04
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 4e-10
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 3e-09
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-07
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-04
3grl_A651 General vesicular transport factor P115; vesicle t 8e-06
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 9e-06
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 2e-05
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 6e-05
1qgr_A 876 Protein (importin beta subunit); transport recepto 3e-04
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 6e-04
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
 Score =  240 bits (613), Expect = 1e-72
 Identities = 76/385 (19%), Positives = 138/385 (35%), Gaps = 34/385 (8%)

Query: 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212
            +   A+  L  LL              V+ +AA  +  L+ + +S    +R    +  +
Sbjct: 13  ELATRAIPELTKLLNDEDQV--------VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 64

Query: 213 VELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
           V  ++ T D +  R  AG L  L+  + E    I +   +P L+ ML S   ++ + A+ 
Sbjct: 65  VRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAIT 123

Query: 272 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ 331
            + NL+      K  V  AG LQ ++ LL+    +        L   A  + + K+ I+ 
Sbjct: 124 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 183

Query: 332 RGAVRPLIEMLQSPDV-QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSL 390
            G  + L+ ++++    +L   ++  L  L+    N+  I   GG+  L   L   +  L
Sbjct: 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL 243

Query: 391 QHNAAFALYGLADNEDNVADFIRVGGVQKL----QDGEFIVQATKDCVAKTLKRL----- 441
             N  + L  L+D           G +  L       +  V     C A  L  L     
Sbjct: 244 VQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVT---CAAGILSNLTCNNY 298

Query: 442 ---EEKIHGRVLNHLLYLMRVA--EKGVQRRVALALAHLCSPDD----QRTIFIDGGGLE 492
                      +  L+  +  A   + +      AL HL S        +       GL 
Sbjct: 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP 358

Query: 493 LLLGLLGSTNPKQQLDGAVALFKLA 517
           +++ LL   +    +   V L +  
Sbjct: 359 VVVKLLHPPSHWPLIKATVGLIRNL 383
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query554
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 100.0
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 100.0
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 100.0
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 100.0
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 100.0
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 100.0
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 100.0
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 100.0
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 100.0
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 100.0
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 100.0
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 100.0
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 100.0
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 100.0
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 100.0
3nmz_A458 APC variant protein; protein-protein complex, arma 100.0
3nmz_A458 APC variant protein; protein-protein complex, arma 100.0
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 100.0
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 100.0
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 100.0
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 100.0
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 100.0
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 100.0
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 100.0
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 100.0
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 99.98
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.96
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.95
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.95
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.94
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.94
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.92
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.91
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.91
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 99.9
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 99.88
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 99.86
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 99.85
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.76
3grl_A 651 General vesicular transport factor P115; vesicle t 99.74
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.74
3grl_A 651 General vesicular transport factor P115; vesicle t 99.73
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 99.71
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 99.7
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.63
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.61
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.6
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.57
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 99.56
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.55
1qgr_A 876 Protein (importin beta subunit); transport recepto 99.55
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.53
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.52
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.5
1qgr_A 876 Protein (importin beta subunit); transport recepto 99.49
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.48
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.45
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.43
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.4
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.38
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 99.36
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.34
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.3
2vgl_A 621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.21
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.21
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 99.05
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 98.96
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.87
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.75
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.73
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.72
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.7
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.66
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.63
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.63
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.61
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.57
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.57
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.43
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.36
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.33
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 98.28
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 98.26
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 98.25
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 98.03
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 98.0
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 97.96
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 97.68
2x19_B963 Importin-13; nuclear transport, protein transport; 97.65
2x19_B 963 Importin-13; nuclear transport, protein transport; 97.56
2x1g_F971 Cadmus; transport protein, developmental protein, 97.51
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 97.47
2x1g_F 971 Cadmus; transport protein, developmental protein, 97.43
2fv2_A268 RCD1 required for cell differentiation1 homolog; a 97.42
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 97.41
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.39
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.3
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 97.21
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 97.04
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 96.99
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 96.93
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 96.92
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 96.92
2fv2_A268 RCD1 required for cell differentiation1 homolog; a 96.9
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 96.88
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 96.83
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 96.83
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 96.72
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 96.56
3ebb_A304 Phospholipase A2-activating protein; armadillo rep 96.52
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 96.49
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 95.93
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 95.93
3ebb_A304 Phospholipase A2-activating protein; armadillo rep 95.92
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 95.66
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 95.46
3c2g_A619 SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev 95.29
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 95.21
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 94.23
2f31_A233 Diaphanous protein homolog 1; formin,MDIA1, protei 93.92
3eg5_B383 Protein diaphanous homolog 1; protein-protein comp 93.86
2f31_A233 Diaphanous protein homolog 1; formin,MDIA1, protei 93.67
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 93.57
3eg5_B383 Protein diaphanous homolog 1; protein-protein comp 93.51
3u0r_A 507 Apoptosis inhibitor 5; heat repeat, armadillo repe 93.5
3c2g_A619 SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev 92.58
2bnx_A386 Diaphanous protein homolog 1; autoinhibition, acti 91.32
2bnx_A 386 Diaphanous protein homolog 1; autoinhibition, acti 90.84
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 89.71
3qml_C315 Protein SLS1, nucleotide exchange factor SIL1; arm 86.6
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 84.22
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
Probab=100.00  E-value=2.1e-39  Score=337.26  Aligned_cols=403  Identities=18%  Similarity=0.279  Sum_probs=349.0

Q ss_pred             HHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc--ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHH
Q 008781           57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK  134 (554)
Q Consensus        57 ~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~  134 (554)
                      ..++.++..+.+.      |...+..|+..++.+.+  .......+++.|+||.|+++|...+.           +.++.
T Consensus        76 ~~l~~lv~~l~s~------d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~-----------~~~q~  138 (529)
T 3tpo_A           76 WSVEDIVKGINSN------NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-----------SPIQF  138 (529)
T ss_dssp             CCHHHHHHHHTSS------CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTC-----------HHHHH
T ss_pred             HHHHHHHHHhcCC------CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCC-----------HHHHH
Confidence            3466677766554      67789999999998755  23446778999999999999976543           28999


Q ss_pred             HHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 008781          135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV  213 (554)
Q Consensus       135 ~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~  213 (554)
                      .|+|+|+|++ .+++.+..+++.|+++.|+.+|.+++.        ++++.|+|+|+|++.+++..+..+...|+++.|+
T Consensus       139 ~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~--------~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll  210 (529)
T 3tpo_A          139 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--------HISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLL  210 (529)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHH
Confidence            9999999999 888899999999999999999998877        9999999999999998999999999999999999


Q ss_pred             HhhcCCC-----HHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHH
Q 008781          214 ELLEFTD-----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  288 (554)
Q Consensus       214 ~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~  288 (554)
                      .++..++     ..+...++++|.+++.+...........++++.|+.++.+++++++..++++|.+++.++.+....+.
T Consensus       211 ~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~  290 (529)
T 3tpo_A          211 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV  290 (529)
T ss_dssp             HTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence            9998654     35678899999999986555544555567899999999999999999999999999998888888888


Q ss_pred             HcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCc-c
Q 008781          289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-Q  367 (554)
Q Consensus       289 ~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~-~  367 (554)
                      ..|+++.|+.+|.+.+..++..++.+|+|++..++.....+.+.|+++.|+.++.++++.++..++|+|+|++.+... .
T Consensus       291 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~  370 (529)
T 3tpo_A          291 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI  370 (529)
T ss_dssp             TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHH
Confidence            999999999999999999999999999999988888888899999999999999999999999999999999987655 4


Q ss_pred             hhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccC--CcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHH
Q 008781          368 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI  445 (554)
Q Consensus       368 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~  445 (554)
                      ..+.+.|+++.|+.++.+++..++..|+++|.|++.+  .+....+++.|                              
T Consensus       371 ~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g------------------------------  420 (529)
T 3tpo_A          371 QQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCG------------------------------  420 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT------------------------------
T ss_pred             HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCc------------------------------
Confidence            5577889999999999999999999999999999764  33444555555                              


Q ss_pred             hhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCC-------chhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 008781          446 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-------DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA  517 (554)
Q Consensus       446 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~  517 (554)
                         +++.|+.+|++.++.++..++.+|.++...       +..+..+.+.||++.|..+..+++.++++.|...|...-
T Consensus       421 ---~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf  496 (529)
T 3tpo_A          421 ---IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  496 (529)
T ss_dssp             ---CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred             ---CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence               467888999999999999999999998531       224567789999999999999999999999999887654
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} Back     alignment and structure
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* Back     alignment and structure
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* Back     alignment and structure
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B Back     alignment and structure
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 554
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 1e-23
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 5e-20
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 1e-18
d1q1sc_ 434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 3e-10
d1xm9a1 457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 4e-23
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 3e-22
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 3e-18
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 4e-15
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 5e-15
d1xm9a1 457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 2e-04
d1jdha_ 529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 4e-22
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 9e-19
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 1e-18
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 2e-17
d1jdha_ 529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 4e-15
d1jdha_ 529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 2e-07
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 2e-21
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 1e-19
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 1e-14
d1xqra1264 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp 2e-18
d1xqra1264 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp 5e-07
d1xqra1264 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp 2e-06
d1xqra1264 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp 9e-06
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 4e-08
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 0.003
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 5e-06
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 4e-04
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 7e-06
d1qbkb_ 888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 1e-05
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-04
d1b3ua_ 588 a.118.1.2 (A:) Constant regulatory domain of prote 3e-04
d1lrva_233 a.118.1.5 (A:) Leucine-rich repeat variant {Azotob 3e-04
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 4e-04
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 0.004
d2vglb_ 579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 0.004
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  101 bits (251), Expect = 1e-23
 Identities = 74/389 (19%), Positives = 138/389 (35%), Gaps = 28/389 (7%)

Query: 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA-HENSSIKTRVRMEGGIPPLVE 214
           N ++  +V  +     SN          +A  A   L   E       +   G IP  V 
Sbjct: 12  NWSVEDIVKGIN----SNNL----ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS 63

Query: 215 LLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVI 273
            L  TD + +Q  +A AL  +A    E    +V+  A+P  I +L S  + I  +AV  +
Sbjct: 64  FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 123

Query: 274 GNLVHSSPNIKKEVLAAGALQPVIGLL-----SSCCSESQREAALLLGQFAATDSDCKVH 328
           GN+       +  V+  GA+ P++ LL     S+      R     L       +     
Sbjct: 124 GNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 183

Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG 388
                 +  L+ +L   D ++   S +A+  L    + +  +    G+VP L  L     
Sbjct: 184 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 243

Query: 389 SLQHNAAFALYG-----------LADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKT 437
                 A    G              +   +A F  +    K    +       +  A  
Sbjct: 244 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 303

Query: 438 LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS--PDDQRTIFIDGGGLELLL 495
             ++++ ++  ++  L+ ++  A+   Q+  A A+ +  S    +Q    +  G +E L+
Sbjct: 304 QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 363

Query: 496 GLLGSTNPKQQLDGAVALFKLANKATTLS 524
            LL + + K       A+  +   A  L 
Sbjct: 364 NLLSAKDTKIIQVILDAISNIFQAAEKLG 392
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233 Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query554
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 100.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 100.0
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.98
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.98
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.95
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.93
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.84
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.83
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.73
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.64
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.47
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.43
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.2
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.2
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.12
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.12
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.06
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.03
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.98
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.95
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 98.9
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.89
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.88
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.87
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.83
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.83
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.81
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 98.49
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.27
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.11
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 97.5
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 97.29
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 97.08
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 96.88
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 96.83
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 96.06
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 95.34
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 94.82
d2bnxa1343 Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { 93.12
d2bnxa1343 Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { 90.59
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 81.85
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 80.16
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-35  Score=302.18  Aligned_cols=431  Identities=22%  Similarity=0.228  Sum_probs=365.3

Q ss_pred             HHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHH
Q 008781           58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA  137 (554)
Q Consensus        58 ~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~  137 (554)
                      .++.++..|...     .+...+..|+.+|.+++.+++.+..+++.|+++.|+.+|++++.            +++..|+
T Consensus        60 ~v~~l~~~L~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~------------~v~~~a~  122 (529)
T d1jdha_          60 MVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD------------SVLFYAI  122 (529)
T ss_dssp             HHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHH
T ss_pred             HHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCH------------HHHHHHH
Confidence            355555555443     35568999999999999999999999999999999999988766            9999999


Q ss_pred             HHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh
Q 008781          138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL  216 (554)
Q Consensus       138 ~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll  216 (554)
                      ++|++++ +++..+..+.+.|+++.|+.+|++.+.        +++..++++|.+++..++..+..+...|+++.++.++
T Consensus       123 ~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~--------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll  194 (529)
T d1jdha_         123 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM  194 (529)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHhhcccchhhhHHHhcCCchHHHHHHHccCh--------HHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHH
Confidence            9999999 778888999999999999999987766        9999999999999988888888899999999999999


Q ss_pred             cC-CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHH
Q 008781          217 EF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP  295 (554)
Q Consensus       217 ~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~  295 (554)
                      .+ ++..++..+++++.+++. +++++..+.+.|+++.|+.++.+++..++..+++++.+++.....   .....|+++.
T Consensus       195 ~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~---~~~~~~~i~~  270 (529)
T d1jdha_         195 RTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGT  270 (529)
T ss_dssp             HHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc---hhhhhhcchh
Confidence            65 456899999999999997 788899999999999999999999999999999999999754332   2223468999


Q ss_pred             HHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC--CCCHHHHHHHHHHHHHHhcCCCc----chh
Q 008781          296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDMHN----QAG  369 (554)
Q Consensus       296 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~--~~~~~v~~~a~~~L~~L~~~~~~----~~~  369 (554)
                      |+.++.+.+..++..++++|++++..++..+..+.+.++++.++..+.  ++.+.+++.++++|++++.....    +..
T Consensus       271 Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~  350 (529)
T d1jdha_         271 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA  350 (529)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHH
T ss_pred             hhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhh
Confidence            999999999999999999999999888888888889999999999885  56788999999999999976543    344


Q ss_pred             hhhcCCHHHHHHHhcCCC-hhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhh--------------------
Q 008781          370 IAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ--------------------  428 (554)
Q Consensus       370 l~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~--------------------  428 (554)
                      +...++++.+++++.+++ ..++..+++++.+++.+++++..+.+.|+++.|++......                    
T Consensus       351 i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~  430 (529)
T d1jdha_         351 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV  430 (529)
T ss_dssp             HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTB
T ss_pred             HHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhccc
Confidence            667899999999997655 56888999999999999999999999999988765332110                    


Q ss_pred             ---hhHHHHHHHHHHH-------HHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhh
Q 008781          429 ---ATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL  498 (554)
Q Consensus       429 ---~~~~~~~~~~~~l-------~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll  498 (554)
                         ........++..+       ......+.++.|+.++.++++.++..++++|++|+.+++.+..+.+.|+++.|++++
T Consensus       431 ~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll  510 (529)
T d1jdha_         431 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL  510 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGG
T ss_pred             chHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHh
Confidence               1111122222221       223466789999999999999999999999999999988899999999999999999


Q ss_pred             CCCChhHHHHHHHHHHHHH
Q 008781          499 GSTNPKQQLDGAVALFKLA  517 (554)
Q Consensus       499 ~~~~~~v~~~a~~~L~~L~  517 (554)
                      .++++.+|..|+.+|.+|+
T Consensus       511 ~s~n~~v~~~a~~aL~~ls  529 (529)
T d1jdha_         511 HSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             GCSSHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999874
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure