Citrus Sinensis ID: 008787

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550---
Protein Sequence
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSVS
Secondary Structure (PSIPRED)
cEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHccccEEEEcccHHHHHHccccccccccEEEEEEccccHHHHHHHHHcccEEEEHHHHHHccccccccccccccccEEEEEEcccccccccHHHHcHHHHHHHHHHHHHcccccccccccccEEEEEcHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEEccccccHHccccccccccccccccccccccEEEcccccEEEEEcccccccccccEEEcHHHHHHHHHccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccccccccccHHcccccccccccccccccHHHHHHHHHHHccccccccEEcccccccccEEEEcHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEccccccHHHEEEEEccccEEEEEEccHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHcccEEEEHHHHHHHcccccccccccccccEEEEEEEcccccccccEEEcHHHHHHHHHHHHHHHHHccccccHccEEEEHHHHHHHHHHHHHHHHHHHccEEEcccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHccEEEEccccccccccEEEcccccccccccccccccccEEEEEEcccccccccccccccEEEEEcccEEEcccccHHHHHHHHHcccEEccccccEccccEEEEEEccccEEEEccccEEccHHHHHHEEccccccEEEEEccccc
Coil and Loop (DISEMBL)
MKIFAAQVeegkegkdgkpsvgpvyrnllasngfpsvdsdlntaWDIFSMSVQkypgnrmlgwrpfvdgkfgpyVWKTYKEVYEEVLQIVSALRAsgaepgcrvgiygancPQWVEAMEACNALSLICvplydtlgpgavnfILDHAEIDFVFVQDKKVkellspdcrsaqRLRVMVCFTSLTAEQKEMAVqtgikpyswdeflhlgkvnemeilppqpfnictimytsgtsgdpkgvvLTHETIATFVSGVDLFLDQfedkmtvddvylSFLPLAHILDRVIEEYFFRRGasvgyyhgdLNALRDDLMELKptllagvpRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMgykqreasplADLLAFRKVKARLGGRLRlvisggaplstEVEEFLRVTCCAFLVqgygltetcgpttvcfpdemcmvgtagpvsvyselrleevpemgysplddppcgevcvrgktlfsgyyknpdltresiidgwfhtgdigqilpngVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSVS
Flexible Loop (DISEMBL)
MKIFAAqveegkegkdgkpsvGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEllspdcrsaqrlRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKaleelrplrRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEmgysplddppcgEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSVS
Low Complexity Region (SEG)
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSVS
Disordered region (IsUnstruct)
***********************VYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSIS*****
Disordered Region (DISOPRED)
*KIFAAQ****************VYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL**********PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSVS
Disordered Region (DISEMBL)
*****************KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSVS
Disordered Region (DISPRO)
*KIFAAQVEEG*********VGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	553	2.2.26 [Sep-21-2011]
O22898	660	Long chain acyl-CoA synth	yes	no	0.989	0.828	0.703	0.0
Q9T0A0	666	Long chain acyl-CoA synth	no	no	0.983	0.816	0.518	1e-170
Q9T009	666	Long chain acyl-CoA synth	no	no	0.983	0.816	0.505	1e-165
Q9C7W4	665	Long chain acyl-CoA synth	no	no	0.990	0.824	0.505	1e-164
Q9XIA9	665	Long chain acyl-CoA synth	no	no	0.972	0.809	0.473	1e-147
Q8LPS1	701	Long chain acyl-CoA synth	no	no	0.878	0.693	0.420	4e-97
Q8LKS5	700	Long chain acyl-CoA synth	no	no	0.880	0.695	0.402	2e-95
Q1ZXQ4	673	Fatty acyl-CoA synthetase	yes	no	0.963	0.791	0.358	3e-95
Q55DR6	667	Fatty acyl-CoA synthetase	no	no	0.911	0.755	0.367	6e-92
Q9ULC5	683	Long-chain-fatty-acid--Co	yes	no	0.875	0.708	0.352	3e-83

>sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1

 Score =  836 bits (2160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/547 (70%), Positives = 465/547 (85%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG +G DGKPSVGPVYRNLL+  GFP +DS++ TAWDIFS SV+K+P N M
Sbjct: 1   MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG NCPQW+ AMEA
Sbjct: 61  LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct: 121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           +++ E    A + G+K YSW +FLH+G+    +  PP+ FNICTIMYTSGTSGDPKGVVL
Sbjct: 181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           TH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHG+
Sbjct: 241 THQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGN 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAW+N GY
Sbjct: 301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
              +ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct: 361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
            G T + FPDEMCM+GT G  +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct: 421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++    
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540

Query: 541 IIEDVSI 547
           +++D+ +
Sbjct: 541 VVQDIWV 547

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)).
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1

 Score =  597 bits (1539), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 282/544 (51%), Positives = 385/544 (70%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K +  QVEEGKEG DG+PSVGPVYR++ A +GFP     +++ WD+F MSV+KYP N ML
Sbjct: 5   KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct: 65  GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG  AV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T ++GV   L    + +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L +DL ELKPT+   VPRV ++++ G++K L +   L++ IFD+ + YK  +M  G  
Sbjct: 305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
             EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             T V  PDE+ M+GT GP     ++RLE VPEM Y  L     GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYK 484

Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
             DLT+E +IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E +EN+Y     
Sbjct: 485 REDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544

Query: 542 IEDV 545
           ++ V
Sbjct: 545 VDSV 548

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1

 Score =  583 bits (1502), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 275/544 (50%), Positives = 371/544 (68%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K F  +VE  KE  DG PSVGPVYR+  A NGFP+    + + WDIF  +V+KYP NRML
Sbjct: 5   KRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R   +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG NC +W+ +MEAC
Sbjct: 65  GRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG GAV FI+ HAE+   FV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           +  EQKE A + G+  +SWDEFL LG+  + E+   +P +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T  +GV  FL      ++  DVY+S+LPLAH+ DR IEE   + G S+G++ GD+
Sbjct: 245 NESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L +DL ELKP++   VPRV ++++ G+++ L      ++++FD  + YK   M  G  
Sbjct: 305 KLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQS 364

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
              ASP  D L F KVK  LGG +R+++SG APL++ +E FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESC 424

Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             T   FPDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYK 484

Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
             DLT+E  IDGW HTGD+G+  PNG +KIIDRKKN+ K++QGEYVA+E LENVY    +
Sbjct: 485 REDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEV 544

Query: 542 IEDV 545
           IE +
Sbjct: 545 IESI 548

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1

 Score =  579 bits (1492), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 279/552 (50%), Positives = 381/552 (69%), Gaps = 4/552 (0%)

Query: 4   FAAQVEEGKEGKDG-KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLG 62
           +  +VE+GK+G DG  PSVGPVYR++ A +GFP    DL +AWDIF +SV+K P N MLG
Sbjct: 6   YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query: 63  WRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122
            R  VDGK G YVW+TYKEV+  V+++ +++R  G   G + GIYGAN P+W+ +MEACN
Sbjct: 66  RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query: 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182
           A  L CVPLYDTLG GA+ FI+ HAE+   F ++ K+ ELL    +S + L+ +V F  +
Sbjct: 126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
           T  Q+  A +  +  YSWD+FL LG+    E+   +  ++CTIMYTSGT+GDPKGV+LT+
Sbjct: 186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query: 243 ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLN 302
           E+I   + GV   L   ++++T  DVYLS+LPLAHI DRVIEE      AS+G++ GD+ 
Sbjct: 246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
            L +D+  LKPT+   VPRV E+I+ G+++ L +   +++++F+  +KYK   M  G   
Sbjct: 306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422
            +ASP+AD + F+KVK  LGG +RL++SG APL+  +E FLRV  CA ++QGYGLTE+CG
Sbjct: 366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query: 423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
            T V  P+E+ M+GT GP     ++RLE VPEMGY  L   P GE+C+RGKTLFSGYYK 
Sbjct: 426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query: 483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
            DLT+E  IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E LEN+Y     I
Sbjct: 486 EDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENLENIYSHVAAI 545

Query: 543 EDVSI---SYSS 551
           E + +   SY S
Sbjct: 546 ESIWVYGNSYES 557

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1

 Score =  521 bits (1341), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 255/539 (47%), Positives = 348/539 (64%), Gaps = 1/539 (0%)

Query: 8   VEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV 67
           VEEG+      PS GPVYR   A +G   + +D+++ W  FS +V+KYP  +MLG R   
Sbjct: 11  VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query: 68  DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
           D K GPY W TYKE ++  ++I SA+R+ G +PG   GIYGANCP+W+ AMEAC +  + 
Sbjct: 71  DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
            VPLYD+LG  AV FI++HAE+  VFVQ+K V  +LS     +  L+ +V F  +++ QK
Sbjct: 131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247
           E A    +  +SW+EF  +G ++E  +   +  +ICTIMYTSGT+G+PKGV+L +  I+ 
Sbjct: 191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD 307
            V  +D  L+  +      DV+ S+LPLAH  D+V+E YF  RG+SVGY+ GD+  L DD
Sbjct: 251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
           +  LKPT+  GVPRV++K++ GI + +     +R+++FD  Y YKL  M  G+ Q EASP
Sbjct: 311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
             D L F K+K  LGGR  +++SG APL   VEEFLR+   + L QGYGLTE+CG +   
Sbjct: 371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRGKTLFSGYYKNPDLT 486
                 MVGT G      E RL  VPEMGY     D P GE+C+RG ++FSGY+K  DLT
Sbjct: 431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query: 487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDV 545
            + +IDGWFHTGDIG+   +G +KIIDRKKN+ K+SQGEYVA+E LEN Y   P+I  +
Sbjct: 491 DQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIAQI 549

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1

 Score =  355 bits (912), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 211/502 (42%), Positives = 287/502 (57%), Gaps = 16/502 (3%)

Query: 40  DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99
           D+ T  D F  +V  +   + LG R  VDG  G Y W TY E       + S L   G  
Sbjct: 82  DIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIP 141

Query: 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159
            G  VGIY  N P+W+    AC++ S + VPLYDTLGP AV FI++HA +  +F   + +
Sbjct: 142 MGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETL 201

Query: 160 KELLSPDCRSAQRLRVMVCFTSLTAE-QKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ 218
             LLS  C S      +V       E    +   +G+K  S+   L+ G+ N     PP+
Sbjct: 202 NSLLS--CLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPK 259

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
           P ++ TI YTSGT+G PKGVVLTH  +   V+G       F  K    DVY+S+LPLAHI
Sbjct: 260 PDDVATICYTSGTTGTPKGVVLTHANLIANVAGS-----SFSVKFFSSDVYISYLPLAHI 314

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
            +R  +      G +VG+Y GD   L DDL  L+PT+ + VPR++ +I+ GI  A++   
Sbjct: 315 YERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSG 374

Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
            L+ R+F+A Y  K   +  G   + ASP+ D L F K+K RLGGR+R + SG +PLS E
Sbjct: 375 GLKERLFNAAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPE 431

Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAGPVSVYSELRLEEVPEMGY 457
           V EFL+V     + +GYG+TET     +   DE   + G  G  +   E++L +VPEM Y
Sbjct: 432 VMEFLKVCFGGRVTEGYGMTETS--CVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNY 489

Query: 458 SPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
           +  D P P GE+CVRG  +F+GYYK+   T+E I  DGW HTGDIG  LP G +KIIDRK
Sbjct: 490 TSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRK 549

Query: 516 KNLIKISQGEYVALEYLENVYC 537
           KN+ K++QGEY+A E +ENVY 
Sbjct: 550 KNIFKLAQGEYIAPEKIENVYA 571

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2

 Score =  350 bits (898), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 201/499 (40%), Positives = 284/499 (56%), Gaps = 12/499 (2%)

Query: 40  DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99
           ++ T  D F  +V+ Y  N+ LG R   DG  G Y W TY E   E   I S L   G  
Sbjct: 82  EIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVN 141

Query: 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159
            G  VG+Y  N P+W+    AC A S + VPLYDTLGP AV F+++HA +  +F   + +
Sbjct: 142 QGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTL 201

Query: 160 KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQP 219
             LLS        +R++V           +   TG+   S+ + L  G+ +     PP+P
Sbjct: 202 NILLS-FLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKP 260

Query: 220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +I TI YTSGT+G PKGVVLTH  +   V+G  +     E +    DVY+S+LPLAHI 
Sbjct: 261 EDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSV-----EAEFFPSDVYISYLPLAHIY 315

Query: 280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
           +R  +      G +VG+Y GD+  L DD   L+PT+   VPR++ +I++GI  A++    
Sbjct: 316 ERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGV 375

Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
           +++R+F+  Y  K   +  G   R  S   D L F K+K +LGGR+R + SG +PLS +V
Sbjct: 376 VKKRLFEIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSPDV 432

Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP 459
            +FLR+     + +GYG+TET    +    D   + G  G  +   E++L +VPEM Y+ 
Sbjct: 433 MDFLRICFGCSVREGYGMTETSCVIS-AMDDGDNLSGHVGSPNPACEVKLVDVPEMNYTS 491

Query: 460 LDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKN 517
            D P P GE+CVRG  +F GYYK+ + TRE +  DGW HTGDIG  LP G +KIIDRKKN
Sbjct: 492 DDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKIIDRKKN 551

Query: 518 LIKISQGEYVALEYLENVY 536
           + K++QGEY+A E +ENVY
Sbjct: 552 IFKLAQGEYIAPEKIENVY 570

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q1ZXQ4|FCSB_DICDI Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1

 Score =  349 bits (896), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 197/549 (35%), Positives = 309/549 (56%), Gaps = 16/549 (2%)

Query: 4   FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSV--DSDLNTAWDIFSMSVQKYPGNRML 61
           +   VE G++ ++G    G + RN   ++   S   D ++ T +D    S +KY   +  
Sbjct: 27  YGQTVEIGEKPENG----GRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCF 82

Query: 62  GWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           G R    +G  G + W +Y    E    I   L   G +P  +VGI+  N  +W+    A
Sbjct: 83  GERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSA 142

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
               S   V  Y+TLG  +++++ +HAEI   F   + +++ L    +  + L+ ++CF 
Sbjct: 143 SFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKGVKVLKTIICFD 201

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           S+  E   +A + G+  Y++DE +  GK    + +  PP P  + TIMYTSGT+G PKGV
Sbjct: 202 SIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGV 261

Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
           ++TH+ + + V  V  F+  ++      DV+ S+LP AH+L+RV+    F  GA++G + 
Sbjct: 262 MITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
           GD++ +  ++  L PTL  GVPRVFE+I   + K + +   L R +F+  Y  K   +  
Sbjct: 317 GDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQH 376

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
           G+K      + DL+ F K+K  LGG++R+++SG APLS + E FLRV  C  ++QGYG +
Sbjct: 377 GFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGAS 436

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           E CG       D+   VGT GP    +E++L +VPE+GY    +   GEVC+RG ++ SG
Sbjct: 437 EGCGGDACKRLDDES-VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSISSG 495

Query: 479 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 538
           YYK+ + TRE   DGWFHTGDIG+   +G + I+DRKKN+ K+SQGEYVA+E +E +   
Sbjct: 496 YYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYVAVEKIETIVVK 555

Query: 539 APIIEDVSI 547
           +  +E V I
Sbjct: 556 SEYVEQVCI 564

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1

 Score =  338 bits (868), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 192/522 (36%), Positives = 299/522 (57%), Gaps = 18/522 (3%)

Query: 36  SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALR 94
           S D    T +D++   + K   +  LG R  + DGK G Y W +YK+       I SAL 
Sbjct: 48  SPDGKTFTLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALV 105

Query: 95  ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV 154
             G   G R+GI+  N P+WV +  A    SL+ V LY TLG  A+ ++++H+EI  +  
Sbjct: 106 QLGLNKGDRIGIFSINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLC 165

Query: 155 QDKKVKELLSPDCRSAQRLRVMVCFTSL-TAEQKEMAVQTGIKPYSWDEFLHLGKVNEME 213
           + K V+++LS        ++ +V +  L  A   +      +K Y   +F  LG+ N  +
Sbjct: 166 EGKNVEKILS---MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQ 222

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
              P P ++CT++YTSG++G+PKGV+LTH  + + V+G +         +  +DV++S+L
Sbjct: 223 HEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFS----PAGVIPEDVHMSYL 278

Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
           PLAH  +R +       G  +G++ G +  L +D+  L+PT L G PRV++++H+ +   
Sbjct: 279 PLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFT 338

Query: 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
           +     L++ +F+     K + + +G      +P+ D L F K K RLGGR++ ++SG A
Sbjct: 339 VNNDSWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSA 394

Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVP 453
           PL  ++ EFLR   C  +V GYGL+E  G  +V +P++   VG  GP     E++L +VP
Sbjct: 395 PLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLIDVP 453

Query: 454 EMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKI 511
           EM Y   D P P GEVC+RG  +F GY+K+P+ T+E +  DGWFHTGDIG+   NG + I
Sbjct: 454 EMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTLSI 513

Query: 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSVS 553
           IDRKKN+ K+SQGEYVA EYLE+V+  +P    V +   S++
Sbjct: 514 IDRKKNIFKLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLN 555

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9ULC5|ACSL5_HUMAN Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1

 Score =  310 bits (793), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 178/505 (35%), Positives = 283/505 (56%), Gaps = 21/505 (4%)

Query: 39  SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG- 97
           SD  T +++F   +        LG+R        PY W +YK+V +    + S L   G 
Sbjct: 72  SDAKTMYEVFQRGLAVSDNGPCLGYRK----PNQPYRWLSYKQVSDRAEYLGSCLLHKGY 127

Query: 98  -AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
            + P   VGI+  N P+W+ +  AC   S++ VPLYDTLGP A+  I++ A+I  V    
Sbjct: 128 KSSPDQFVGIFAQNRPEWIISELACYTYSMVAVPLYDTLGPEAIVHIVNKADIAMVICDT 187

Query: 157 KKVKELLSPDCRSA--QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI 214
            +   +L  +        L+V++       + K+   ++GI+  S  +  +LGK +  + 
Sbjct: 188 PQKALVLIGNVEKGFTPSLKVIILMDPFDDDLKQRGEKSGIEILSLYDAENLGKEHFRKP 247

Query: 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272
           +PP P ++  I +TSGT+GDPKG ++TH+ I   VS    FL   E     T DDV +S+
Sbjct: 248 VPPSPEDLSVICFTSGTTGDPKGAMITHQNI---VSNAAAFLKCVEHAYEPTPDDVAISY 304

Query: 273 LPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK 332
           LPLAH+ +R+++   +  GA VG++ GD+  L DD+  LKPTL   VPR+  +I++ ++ 
Sbjct: 305 LPLAHMFERIVQAVVYSCGARVGFFQGDIRLLADDMKTLKPTLFPAVPRLLNRIYDKVQN 364

Query: 333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG 392
             E   PL++ +       K   +  G  + ++    D L F K++  LGGR+R++++G 
Sbjct: 365 --EAKTPLKKFLLKLAVSSKFKELQKGIIRHDS--FWDKLIFAKIQDSLGGRVRVIVTGA 420

Query: 393 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
           AP+ST V  F R      + + YG TE  G  T   P +        P++  + ++LE+V
Sbjct: 421 APMSTSVMTFFRAAMGCQVYEAYGQTECTGGCTFTLPGDWTSGHVGVPLAC-NYVKLEDV 479

Query: 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511
            +M Y  +++   GEVC++G  +F GY K+P+ T+E++  DGW HTGDIG+ LPNG +KI
Sbjct: 480 ADMNYFTVNNE--GEVCIKGTNVFKGYLKDPEKTQEALDSDGWLHTGDIGRWLPNGTLKI 537

Query: 512 IDRKKNLIKISQGEYVALEYLENVY 536
           IDRKKN+ K++QGEY+A E +EN+Y
Sbjct: 538 IDRKKNIFKLAQGEYIAPEKIENIY 562

Acyl-CoA synthetases (ACSL) activate long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL. May have a role in the survival of glioma cells.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	553
255548375	660	long-chain-fatty-acid CoA ligase, putati	0.989	0.828	0.800	0.0
225437622	662	PREDICTED: long chain acyl-CoA synthetas	0.996	0.832	0.780	0.0
224068616	665	predicted protein [Populus trichocarpa]	0.989	0.822	0.783	0.0
356505647	662	PREDICTED: long chain acyl-CoA synthetas	0.989	0.826	0.778	0.0
356572815	662	PREDICTED: long chain acyl-CoA synthetas	0.996	0.832	0.767	0.0
356534712	660	PREDICTED: long chain acyl-CoA synthetas	0.996	0.834	0.742	0.0
356499773	660	PREDICTED: long chain acyl-CoA synthetas	0.996	0.834	0.744	0.0
357511417	668	Annotation was added to scaffolds in Nov	0.998	0.826	0.734	0.0
449518374	660	PREDICTED: long chain acyl-CoA synthetas	0.996	0.834	0.75	0.0
297824813	660	long-chain-fatty-acid--CoA ligase family	0.989	0.828	0.709	0.0

>gi|255548375|ref|XP_002515244.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] gi|223545724|gb|EEF47228.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis]

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/547 (80%), Positives = 494/547 (90%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK+FA +VEEG+EGKDG PSVGPVYRN+L+ N FP+ D D++TAWD+FS+SV+KYP N+M
Sbjct: 1   MKVFAVEVEEGREGKDGNPSVGPVYRNVLSKNEFPAPDCDMDTAWDLFSVSVKKYPENKM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FV+GK GPYVWKTYKEVYEEVLQI SALRASGAEPGCRVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWRKFVNGKVGPYVWKTYKEVYEEVLQIGSALRASGAEPGCRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A SL+CVPLYDTLGP AVNFI+DHAEIDF FVQDKKVKELL+PDC SA RL+ +VCFT
Sbjct: 121 CSAHSLVCVPLYDTLGPNAVNFIVDHAEIDFAFVQDKKVKELLNPDCGSASRLKTVVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A Q  IKPYSW+EFL LGK N  E  PP PF+ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAEQIQIKPYSWEEFLRLGKENPSETSPPHPFSICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE + +F+  VDLF++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFFR+GA+VGYYHGD
Sbjct: 241 THEAVMSFLRSVDLFMEQFEDKMTVDDVYLSFLPLAHILDRMIEEYFFRKGAAVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNAL+DDLMELKPT LAGVPRVFEKIHEGIKKALEEL P+RRRIFDALYKYKL WMN+GY
Sbjct: 301 LNALKDDLMELKPTFLAGVPRVFEKIHEGIKKALEELNPVRRRIFDALYKYKLYWMNLGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           KQ+ ASPLADLLAFRKVKA+LGGRLRL+ISG APLSTEVEEFLRVTCCAF+VQGYGLTET
Sbjct: 361 KQKYASPLADLLAFRKVKAKLGGRLRLIISGAAPLSTEVEEFLRVTCCAFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CGP T+ FPDEMCM+G  G V V +ELRLEEVPEMGY+PL +PP GE+CVRGKTLFSGYY
Sbjct: 421 CGPVTIGFPDEMCMMGAVGAVCVCNELRLEEVPEMGYNPLGNPPRGEICVRGKTLFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LTRE + DGWFHTGDIG+I PNGVVKIIDRKK+LIK+SQGEY+ALEYLENVY + P
Sbjct: 481 KNPELTRECMKDGWFHTGDIGEIHPNGVVKIIDRKKHLIKLSQGEYIALEYLENVYSITP 540

Query: 541 IIEDVSI 547
           I+ED+ +
Sbjct: 541 IVEDIWV 547

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437622|ref|XP_002278345.1| PREDICTED: long chain acyl-CoA synthetase 1 [Vitis vinifera] gi|297744008|emb|CBI36978.3| unnamed protein product [Vitis vinifera]

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/551 (78%), Positives = 490/551 (88%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FA QVE G+EG+DGKPSVGPVYRN LA +GFP +DS+LNTAWD   +S +KYPGNRM
Sbjct: 1   MKTFAVQVENGREGRDGKPSVGPVYRNFLAKSGFPPMDSNLNTAWDNLRISSEKYPGNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FV GK GPY WKTY+EVYEE+L I SAL+ASGA+PG RVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWREFVGGKLGPYKWKTYREVYEEILHIGSALQASGAQPGSRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A SLICVPLYDTLGPGAV++I+DHAE+DFVFVQDKKVKELL+PDCRSA+RL++MVCFT
Sbjct: 121 CSAYSLICVPLYDTLGPGAVDYIIDHAEVDFVFVQDKKVKELLNPDCRSAKRLKLMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           S T EQK+ A   GIKPYSWDEFLH+GK N  E+ PPQP +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SPTEEQKDKAADIGIKPYSWDEFLHMGKENPSEVFPPQPLDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE + T V GVD+F++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFF +GASVGYYHGD
Sbjct: 241 THENVTTIVRGVDIFMEQFEDKMTVDDVYLSFLPLAHILDRIIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           +NALR+DLMELKPTL AGVPRVFE++HEGIKKA++EL P+RRRIF  LYKYKL+WMN GY
Sbjct: 301 MNALREDLMELKPTLFAGVPRVFERVHEGIKKAVQELNPIRRRIFGVLYKYKLSWMNSGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K REASPLADLLAFRKVKARLGGR+RL+ISGGAPLSTEVEEFLRVT CAFL QGYGLTET
Sbjct: 361 KHREASPLADLLAFRKVKARLGGRVRLIISGGAPLSTEVEEFLRVTSCAFLTQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CG T++ FPDEM M+GT G VSVYSELRLEEVPEMGY P  DPP GE+CVRGKT+F+GY+
Sbjct: 421 CGLTSIGFPDEMSMIGTVGAVSVYSELRLEEVPEMGYDPFGDPPRGEICVRGKTIFAGYH 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT ESI DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEYVA+EYLE VY  A 
Sbjct: 481 KNPELTLESIRDGWFHTGDIGEMLPNGVLKIIDRKKNLVKLSQGEYVAVEYLEKVYGTAD 540

Query: 541 IIEDVSISYSS 551
           I+ED+ +  +S
Sbjct: 541 IVEDIWVYGNS 551

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068616|ref|XP_002302784.1| predicted protein [Populus trichocarpa] gi|222844510|gb|EEE82057.1| predicted protein [Populus trichocarpa]

 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/550 (78%), Positives = 489/550 (88%), Gaps = 3/550 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           +K FAAQVEEG+EGKDGKPSVGPVYRNLL+   +P +D D+ T+WDIFS S +KYP  +M
Sbjct: 3   LKAFAAQVEEGREGKDGKPSVGPVYRNLLSKKEYPPLDRDVTTSWDIFSSSAKKYPEYKM 62

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPYVWKTYKEVY+EVLQI SALRASGAEPG RVGIYG+NCPQW+EAMEA
Sbjct: 63  LGWRKFVDGKVGPYVWKTYKEVYDEVLQISSALRASGAEPGYRVGIYGSNCPQWIEAMEA 122

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           CNA SL+CVPLYDT+GP AVNFI+DHAEIDFVFVQDKKVKELL PDC SAQRL+ +VCFT
Sbjct: 123 CNAQSLVCVPLYDTIGPRAVNFIIDHAEIDFVFVQDKKVKELLDPDCASAQRLKAIVCFT 182

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A Q GIK YSW+E+L +GK N  EI PPQP +ICTIMYTSGTSGDPKGVV+
Sbjct: 183 SLTEEEKDRAAQMGIKSYSWEEYLCMGKENPSEIFPPQPLSICTIMYTSGTSGDPKGVVI 242

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
            HET+A FV G+DLF++QFEDKMT DDVYLSFLPLAH+LDR+IEEYFFR+GASVGYYHGD
Sbjct: 243 LHETVAAFVRGIDLFMEQFEDKMTTDDVYLSFLPLAHVLDRMIEEYFFRKGASVGYYHGD 302

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIK---KALEELRPLRRRIFDALYKYKLAWMN 357
           LNALRDDLMELKPT LAGVPRVFEKI EG++   KAL+EL PLRR IFD LY+YKL WMN
Sbjct: 303 LNALRDDLMELKPTCLAGVPRVFEKIQEGMEIPIKALQELSPLRRNIFDVLYRYKLGWMN 362

Query: 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 417
            GY+Q+ ASPLADLLAFRKVKA+LGGRLRL+I GGA LSTEVEEFLRVT CAF++QGYGL
Sbjct: 363 RGYRQKYASPLADLLAFRKVKAKLGGRLRLIICGGASLSTEVEEFLRVTSCAFVIQGYGL 422

Query: 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477
           TE+CGP T+ FPDEMCM+GT G V+VY++L LEEVPEMGY PL +PPCGE+C+RGKTLFS
Sbjct: 423 TESCGPATMAFPDEMCMLGTVGAVAVYNDLCLEEVPEMGYDPLGNPPCGEICLRGKTLFS 482

Query: 478 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 537
           GYYKNP+LTRES+ DGWFHTGDIG+ILPNGVVKIIDRKKNLIK+SQGEY+A+EYLENVY 
Sbjct: 483 GYYKNPELTRESMKDGWFHTGDIGEILPNGVVKIIDRKKNLIKLSQGEYIAIEYLENVYN 542

Query: 538 VAPIIEDVSI 547
             PI+ED+ I
Sbjct: 543 NTPIVEDIWI 552

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505647|ref|XP_003521601.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/547 (77%), Positives = 485/547 (88%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG+EG +G+ S+GPVYRNLL+ N FP +D DL+TAWDIFSM+V+KYP NRM
Sbjct: 1   MKSFAAKVEEGREGINGELSIGPVYRNLLSKNQFPPLDPDLSTAWDIFSMAVKKYPKNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVD K GPYVWKTYKEVY+EVL I SALRASGAE G ++GIYGANCPQW+ AMEA
Sbjct: 61  LGWREFVDAKIGPYVWKTYKEVYDEVLHIGSALRASGAELGSKIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SL+CVPLYDTLGPGAVNFI+DH E+DFVFVQD+KV  LL+PDC+SAQRL+ MV FT
Sbjct: 121 CCAHSLVCVPLYDTLGPGAVNFIIDHGELDFVFVQDRKVIHLLNPDCKSAQRLKAMVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A+  GIKPYSW EFLH+GK N   I  PQP NICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAISIGIKPYSWQEFLHMGKENPSNISAPQPNNICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE IATFV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHGD
Sbjct: 241 THENIATFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F  LYK+KL WMN GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLYKHKLGWMNKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K   ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CG TT+ +PDEMCM+GT GPVSVY+E+RLEEVPEMGY+PL  P CGE+C+RGKT+F+GYY
Sbjct: 421 CGSTTLAYPDEMCMLGTVGPVSVYNEMRLEEVPEMGYNPLGSPSCGEICLRGKTVFTGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LTRE+I DGWFHTGDI ++ PNGVVKIIDRKKNLIK+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTREAIKDGWFHTGDIAEVQPNGVVKIIDRKKNLIKLSQGEYIALEHLENVYGITP 540

Query: 541 IIEDVSI 547
           I+EDV +
Sbjct: 541 IVEDVWV 547

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572815|ref|XP_003554561.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/551 (76%), Positives = 485/551 (88%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FA +VEEG+EG +G+ S+GPVYRNLL+ N FP +D DL+TAWDIFSM+V+KY  NRM
Sbjct: 1   MKGFAVKVEEGREGTNGELSIGPVYRNLLSKNEFPPLDPDLSTAWDIFSMAVKKYRKNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPYVWKTY+EVY+EVL I SALRASGAEPG R+GIYGANCPQW+ AMEA
Sbjct: 61  LGWREFVDGKIGPYVWKTYEEVYDEVLHIGSALRASGAEPGSRIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A +LICVPLYDTLGPGAVNFI+DH E+DFVFVQDKKV  LL+PDC+SAQRL+ MV FT
Sbjct: 121 CCAHNLICVPLYDTLGPGAVNFIIDHGELDFVFVQDKKVIHLLNPDCKSAQRLKAMVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A+  GIKPYSW+EFLH+GK N   I PPQP +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAIAIGIKPYSWEEFLHMGKENPSNISPPQPNSICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE I  FV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHGD
Sbjct: 241 THENITVFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F  LYK+KL WMN GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLYKHKLGWMNKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K   ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CG TT+ +PDEMCM+GT GPVS+Y+E+RLEEVPEMGY+PL  P CGE+C+RGKT+F+GYY
Sbjct: 421 CGSTTLAYPDEMCMLGTVGPVSIYNEMRLEEVPEMGYNPLGSPSCGEICLRGKTVFTGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LTRE+I DGWFHTGDI ++  NG VKIIDRKKNLIK+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTREAIKDGWFHTGDIAEVQLNGAVKIIDRKKNLIKLSQGEYIALEHLENVYGITP 540

Query: 541 IIEDVSISYSS 551
           I+EDV +  +S
Sbjct: 541 IVEDVWVYGNS 551

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534712|ref|XP_003535896.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/551 (74%), Positives = 479/551 (86%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGK+G  SVGPVYRNLL+ N FP +D D +T WDIF +SV+ +P NRM
Sbjct: 1   MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R  VDGK GPYVWKTYKEVY+EVL + SALRASG+EPG ++GIYG+NCP+W+ AME 
Sbjct: 61  LGKRKIVDGKIGPYVWKTYKEVYDEVLHMSSALRASGSEPGTKIGIYGSNCPEWIVAMEV 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A S ICVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S++RL+ MVCFT
Sbjct: 121 CSAQSFICVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           +LT E+K  A   GIKPYSW EFLHLGK N     PPQ  +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 TLTEEEKAKATAIGIKPYSWHEFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           T+E +   V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR+GASVGYYHGD
Sbjct: 241 TYENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LY YKL WM  GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K REAS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHREASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CGPTT+ FPDEMCM+GT G VS+Y+E++LEEVPEMGY+PL+ PPCGE+CVRGKT+F+ YY
Sbjct: 421 CGPTTLGFPDEMCMLGTVGAVSIYNEIKLEEVPEMGYNPLETPPCGEICVRGKTVFTAYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT+E+I DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIALEHLENVYGITP 540

Query: 541 IIEDVSISYSS 551
           I+ED+ +  +S
Sbjct: 541 IVEDIWVYGNS 551

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499773|ref|XP_003518711.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/551 (74%), Positives = 479/551 (86%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGK+G  SVGPVYRNLL+ N FP +D D +T WDIF +SV+ +P NRM
Sbjct: 1   MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R  VD K GPYVWKTYKEVY+EVL + SALRASGAEPG ++GIYG+NCP+W+ AMEA
Sbjct: 61  LGKRKIVDEKIGPYVWKTYKEVYDEVLHMSSALRASGAEPGTKIGIYGSNCPEWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A S +CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S++RL+ MVCFT
Sbjct: 121 CSAQSFVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K  A   GIKPYSW +FLHLGK N     PPQ  +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKAKATAIGIKPYSWHDFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           T+E +   V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR+GASVGYYHGD
Sbjct: 241 TNENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LY YKL WM  GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K R+AS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHRQASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CGPTT+ FPDEMCM+GT G VS+Y+E+ LEEVPEMGY+PL+ PPCGE+CVRGKT+F+GYY
Sbjct: 421 CGPTTLGFPDEMCMLGTVGAVSIYNEIMLEEVPEMGYNPLETPPCGEICVRGKTVFTGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT+E+I DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEY+ALE+LENVY V P
Sbjct: 481 KNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIALEHLENVYGVTP 540

Query: 541 IIEDVSISYSS 551
           I+ED+ +  +S
Sbjct: 541 IVEDIWVYGNS 551

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511417|ref|XP_003625997.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|355501012|gb|AES82215.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula]

 Score =  883 bits (2281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/561 (73%), Positives = 482/561 (85%), Gaps = 9/561 (1%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG+EGK+GK SVGPVYRNLLA + FP  D DL TAWDIFS++ +KYP NRM
Sbjct: 1   MKSFAAKVEEGREGKNGKLSVGPVYRNLLAKDQFPPSDPDLTTAWDIFSVAAKKYPQNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGKFG YVWKTYK+VY+EV+ I SALRASGA+ G R+G+YG+NCPQW+ AMEA
Sbjct: 61  LGWREFVDGKFGSYVWKTYKQVYDEVMHIGSALRASGAQHGSRIGVYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SL+CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKV +LLSPDC+SA RL+ +VCFT
Sbjct: 121 CCAHSLVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVMQLLSPDCKSASRLKAIVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
            LT E+K+ A   G+KPYSW+EFL +GK     I PPQ  +ICTIMYTSGTSGDP+GVVL
Sbjct: 181 KLTNEEKDKATSIGVKPYSWEEFLQMGKETPSTISPPQAHDICTIMYTSGTSGDPQGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG- 299
           THE I  FV G+D+F++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHG 
Sbjct: 241 THENITYFVRGMDIFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGV 300

Query: 300 -----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354
                DL ALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LYK KL 
Sbjct: 301 YSIIHDLTALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYKRKLG 360

Query: 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQG 414
           WM  GYK   ASP ADLLAFRKVKARLGGR+RL+I+GGAPLS+E+EEFLRVT  AF+ QG
Sbjct: 361 WMKKGYKHCNASPFADLLAFRKVKARLGGRVRLIITGGAPLSSEIEEFLRVTSGAFVCQG 420

Query: 415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 474
           YGLTETCG TT+ FPDEMCM+GT GPVS+Y+E++LEEVPEMGY+PL +P CGE+C+RGK+
Sbjct: 421 YGLTETCGSTTLAFPDEMCMLGTVGPVSIYNEIQLEEVPEMGYNPLGNPSCGEICLRGKS 480

Query: 475 LFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
           +FSGY+KNP+LT+ESI+DGWFHTGDIG++ PNGVVKIIDRKKNLIK+SQGEY+ALEYLEN
Sbjct: 481 VFSGYHKNPELTKESIVDGWFHTGDIGEMQPNGVVKIIDRKKNLIKLSQGEYIALEYLEN 540

Query: 535 VYCVAPIIEDVSI---SYSSV 552
           VY + PI+EDV +   S+ SV
Sbjct: 541 VYGITPIVEDVWVYGNSFKSV 561

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518374|ref|XP_004166217.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Cucumis sativus]

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/552 (75%), Positives = 476/552 (86%), Gaps = 1/552 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGKDGKPSVGPVYRN+LA   FPS   DL+T+WD+FS+S  KY   RM
Sbjct: 1   MKRFSVKVEEGREGKDGKPSVGPVYRNVLAEKEFPSPYEDLSTSWDLFSVSANKYAERRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPY+WKTYKEVY +VL I SALRA GAEPG R+GIYGANCPQW+ AMEA
Sbjct: 61  LGWRKFVDGKPGPYIWKTYKEVYGDVLNIGSALRAIGAEPGSRIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           CNA SLICVPLYDTLG GAVNFI+DHAEID VF+QDKK KELL+  C   +RL+V +CFT
Sbjct: 121 CNAHSLICVPLYDTLGHGAVNFIIDHAEIDIVFIQDKKAKELLNSGCTIPERLKVFICFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHL-GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV 239
           SL  E+K  A   G+KPYSWDEFL L  K N  EI PP+P +ICTIMYTSGTSG PKGVV
Sbjct: 181 SLKEEEKISATNNGMKPYSWDEFLRLVRKENPSEISPPRPLDICTIMYTSGTSGTPKGVV 240

Query: 240 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG 299
           LT ETI TF+ GVD+ ++QFEDKMT DDVYLSFLPLAHILDR +EEYFFR+GASVGYYHG
Sbjct: 241 LTQETITTFIRGVDIQMEQFEDKMTEDDVYLSFLPLAHILDRTVEEYFFRKGASVGYYHG 300

Query: 300 DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG 359
           DL+A++DDLMELKPTLL GVPRVFEKIHEGIK+A++ L P+RR+ FD LYKYKL+WMN G
Sbjct: 301 DLDAIKDDLMELKPTLLVGVPRVFEKIHEGIKQAVQVLNPVRRKAFDLLYKYKLSWMNSG 360

Query: 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE 419
           YKQ++ASPLADLLAFRKVKARLGGRLRL+ISGGA LSTEVEEFLRVTCCAF VQGYGLTE
Sbjct: 361 YKQKDASPLADLLAFRKVKARLGGRLRLIISGGAALSTEVEEFLRVTCCAFFVQGYGLTE 420

Query: 420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY 479
           TCGPTT+ FPDEMCM+G  G V++++EL LEEVP+MGY+PL D PCGE+CVRGKT+F+ Y
Sbjct: 421 TCGPTTIGFPDEMCMLGNVGGVTLFNELCLEEVPDMGYNPLGDRPCGEICVRGKTVFTEY 480

Query: 480 YKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA 539
           YK+P+LT+ESI DGWFHTGDIG++ PNGVVKIIDRKKNLIK+SQGEY+ALEYLENVY + 
Sbjct: 481 YKDPELTKESIKDGWFHTGDIGEMFPNGVVKIIDRKKNLIKLSQGEYIALEYLENVYSIT 540

Query: 540 PIIEDVSISYSS 551
           PI+ED+ I  +S
Sbjct: 541 PIVEDIWIYGNS 552

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824813|ref|XP_002880289.1| long-chain-fatty-acid--CoA ligase family protein [Arabidopsis lyrata subsp. lyrata] gi|297326128|gb|EFH56548.1| long-chain-fatty-acid--CoA ligase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  840 bits (2171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/547 (70%), Positives = 463/547 (84%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+ EEG +G DGKPSVGPVYRNLL+  GFP +DS++ TAWDIFS SV+K+P N M
Sbjct: 1   MKSFAAKAEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VD K GPY+WKTYKEVYEEVLQI SALRA GAEPGCRVGIYG NCPQW+ AMEA
Sbjct: 61  LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAVGAEPGCRVGIYGINCPQWIIAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct: 121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           +++ E    A + G+K YSW +FLH+G+    E  PP+  NICTIMYTSGTSGDPKGVVL
Sbjct: 181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEETNPPKALNICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           TH+ +ATFV G+D+F+DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHGD
Sbjct: 241 THQAVATFVVGMDIFMDQFEDKMTHDDVYLSFLPLAHILDRLNEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAWMN GY
Sbjct: 301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKHKLAWMNRGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
              +ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct: 361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
            G T + FPDEMCM+GT G  +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct: 421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVAEMGYDPLGENPAGEICIRGQCMFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT E I DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++    
Sbjct: 481 KNPELTEEVIKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540

Query: 541 IIEDVSI 547
           +++D+ +
Sbjct: 541 VVQDIWV 547

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	553
TAIR|locus:2065195	660	LACS1 "AT2G47240" [Arabidopsis	0.985	0.825	0.706	1.4e-220
TAIR|locus:2138141	666	LACS4 "long-chain acyl-CoA syn	0.983	0.816	0.518	8.9e-157
TAIR|locus:2136148	666	AT4G11030 [Arabidopsis thalian	0.983	0.816	0.505	2.5e-152
TAIR|locus:2014265	665	LACS3 "long-chain acyl-CoA syn	0.990	0.824	0.505	1.1e-151
TAIR|locus:2010177	665	LACS2 "long-chain acyl-CoA syn	0.972	0.809	0.473	1.8e-135
TAIR|locus:2083013	701	LACS6 "AT3G05970" [Arabidopsis	0.880	0.694	0.423	9.7e-96
DICTYBASE|DDB_G0269474	673	fcsB "fatty acyl-CoA synthetas	0.960	0.789	0.362	5.7e-91
TAIR|locus:2143661	700	LACS7 "AT5G27600" [Arabidopsis	0.887	0.701	0.403	5.7e-91
DICTYBASE|DDB_G0269242	667	fcsA "long-chain-fatty-acid-Co	0.907	0.752	0.372	6.7e-88
UNIPROTKB|F1NNV2	683	ACSL5 "Uncharacterized protein	0.924	0.748	0.345	8.9e-86

TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)]

 Score = 2130 (754.9 bits), Expect = 1.4e-220, P = 1.4e-220
 Identities = 385/545 (70%), Positives = 464/545 (85%)

Query:     1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
             MK FAA+VEEG +G DGKPSVGPVYRNLL+  GFP +DS++ TAWDIFS SV+K+P N M
Sbjct:     1 MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60

Query:    61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
             LGWR  VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG NCPQW+ AMEA
Sbjct:    61 LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEA 120

Query:   121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
             C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct:   121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180

Query:   181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
             +++ E    A + G+K YSW +FLH+G+    +  PP+ FNICTIMYTSGTSGDPKGVVL
Sbjct:   181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVL 240

Query:   241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
             TH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHG+
Sbjct:   241 THQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGN 300

Query:   301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
             LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAW+N GY
Sbjct:   301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGY 360

Query:   361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
                +ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct:   361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420

Query:   421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
              G T + FPDEMCM+GT G  +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct:   421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYY 480

Query:   481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
             KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++    
Sbjct:   481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540

Query:   541 IIEDV 545
             +++D+
Sbjct:   541 VVQDI 545

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1528 (542.9 bits), Expect = 8.9e-157, P = 8.9e-157
 Identities = 282/544 (51%), Positives = 385/544 (70%)

Query:     2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
             K +  QVEEGKEG DG+PSVGPVYR++ A +GFP     +++ WD+F MSV+KYP N ML
Sbjct:     5 KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64

Query:    62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
             G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct:    65 GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query:   122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
             NA  L CVPLYDTLG  AV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct:   125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query:   182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
             ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct:   185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query:   242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
             +E+I T ++GV   L    + +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct:   245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query:   302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
               L +DL ELKPT+   VPRV ++++ G++K L +   L++ IFD+ + YK  +M  G  
Sbjct:   305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364

Query:   362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
               EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct:   365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query:   422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
               T V  PDE+ M+GT GP     ++RLE VPEM Y  L     GE+C+RGKTLFSGYYK
Sbjct:   425 AGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYK 484

Query:   482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
               DLT+E +IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E +EN+Y     
Sbjct:   485 REDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544

Query:   542 IEDV 545
             ++ V
Sbjct:   545 VDSV 548

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1486 (528.2 bits), Expect = 2.5e-152, P = 2.5e-152
 Identities = 275/544 (50%), Positives = 371/544 (68%)

Query:     2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
             K F  +VE  KE  DG PSVGPVYR+  A NGFP+    + + WDIF  +V+KYP NRML
Sbjct:     5 KRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRML 64

Query:    62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
             G R   +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG NC +W+ +MEAC
Sbjct:    65 GRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEAC 124

Query:   122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
             NA  L CVPLYDTLG GAV FI+ HAE+   FV++KK+ EL      S + ++ +V F  
Sbjct:   125 NAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGG 184

Query:   182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
             +  EQKE A + G+  +SWDEFL LG+  + E+   +P +ICTIMYTSGT+GDPKGV+++
Sbjct:   185 VKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMIS 244

Query:   242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
             +E+I T  +GV  FL      ++  DVY+S+LPLAH+ DR IEE   + G S+G++ GD+
Sbjct:   245 NESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDV 304

Query:   302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
               L +DL ELKP++   VPRV ++++ G+++ L      ++++FD  + YK   M  G  
Sbjct:   305 KLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQS 364

Query:   362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
                ASP  D L F KVK  LGG +R+++SG APL++ +E FLRV  C  ++QGYGLTE+C
Sbjct:   365 HVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESC 424

Query:   422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
               T   FPDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct:   425 AGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYK 484

Query:   482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
               DLT+E  IDGW HTGD+G+  PNG +KIIDRKKN+ K++QGEYVA+E LENVY    +
Sbjct:   485 REDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEV 544

Query:   542 IEDV 545
             IE +
Sbjct:   545 IESI 548

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1480 (526.0 bits), Expect = 1.1e-151, P = 1.1e-151
 Identities = 279/552 (50%), Positives = 381/552 (69%)

Query:     4 FAAQVEEGKEGKDG-KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLG 62
             +  +VE+GK+G DG  PSVGPVYR++ A +GFP    DL +AWDIF +SV+K P N MLG
Sbjct:     6 YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query:    63 WRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122
              R  VDGK G YVW+TYKEV+  V+++ +++R  G   G + GIYGAN P+W+ +MEACN
Sbjct:    66 RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query:   123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182
             A  L CVPLYDTLG GA+ FI+ HAE+   F ++ K+ ELL    +S + L+ +V F  +
Sbjct:   126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query:   183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
             T  Q+  A +  +  YSWD+FL LG+    E+   +  ++CTIMYTSGT+GDPKGV+LT+
Sbjct:   186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query:   243 ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLN 302
             E+I   + GV   L   ++++T  DVYLS+LPLAHI DRVIEE      AS+G++ GD+ 
Sbjct:   246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query:   303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
              L +D+  LKPT+   VPRV E+I+ G+++ L +   +++++F+  +KYK   M  G   
Sbjct:   306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query:   363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422
              +ASP+AD + F+KVK  LGG +RL++SG APL+  +E FLRV  CA ++QGYGLTE+CG
Sbjct:   366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query:   423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
              T V  P+E+ M+GT GP     ++RLE VPEMGY  L   P GE+C+RGKTLFSGYYK 
Sbjct:   426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query:   483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
              DLT+E  IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E LEN+Y     I
Sbjct:   486 EDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENLENIYSHVAAI 545

Query:   543 EDVSI---SYSS 551
             E + +   SY S
Sbjct:   546 ESIWVYGNSYES 557

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1327 (472.2 bits), Expect = 1.8e-135, P = 1.8e-135
 Identities = 255/539 (47%), Positives = 348/539 (64%)

Query:     8 VEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV 67
             VEEG+      PS GPVYR   A +G   + +D+++ W  FS +V+KYP  +MLG R   
Sbjct:    11 VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query:    68 DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
             D K GPY W TYKE ++  ++I SA+R+ G +PG   GIYGANCP+W+ AMEAC +  + 
Sbjct:    71 DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query:   128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
              VPLYD+LG  AV FI++HAE+  VFVQ+K V  +LS     +  L+ +V F  +++ QK
Sbjct:   131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query:   188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247
             E A    +  +SW+EF  +G ++E  +   +  +ICTIMYTSGT+G+PKGV+L +  I+ 
Sbjct:   191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query:   248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD 307
              V  +D  L+  +      DV+ S+LPLAH  D+V+E YF  RG+SVGY+ GD+  L DD
Sbjct:   251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query:   308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
             +  LKPT+  GVPRV++K++ GI + +     +R+++FD  Y YKL  M  G+ Q EASP
Sbjct:   311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query:   368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
               D L F K+K  LGGR  +++SG APL   VEEFLR+   + L QGYGLTE+CG +   
Sbjct:   371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query:   428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRGKTLFSGYYKNPDLT 486
                   MVGT G      E RL  VPEMGY     D P GE+C+RG ++FSGY+K  DLT
Sbjct:   431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query:   487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDV 545
              + +IDGWFHTGDIG+   +G +KIIDRKKN+ K+SQGEYVA+E LEN Y   P+I  +
Sbjct:   491 DQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIAQI 549

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010311 "lateral root formation" evidence=IMP

GO:0010025 "wax biosynthetic process" evidence=IGI

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)]

 Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
 Identities = 216/510 (42%), Positives = 296/510 (58%)

Query:    34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
             FP    D+ T  D F  +V  +   + LG R  VDG  G Y W TY E       + S L
Sbjct:    77 FPD-HPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGL 135

Query:    94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
                G   G  VGIY  N P+W+    AC++ S + VPLYDTLGP AV FI++HA +  +F
Sbjct:   136 VHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIF 195

Query:   154 VQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212
                + +  LLS  C S    +R++V    L      +   +G+K  S+   L+ G+ N  
Sbjct:   196 CVAETLNSLLS--CLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQ 253

Query:   213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF 272
                PP+P ++ TI YTSGT+G PKGVVLTH  +   V+G       F  K    DVY+S+
Sbjct:   254 RFFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAG-----SSFSVKFFSSDVYISY 308

Query:   273 LPLAHILDR---VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             LPLAHI +R   ++  YF   G +VG+Y GD   L DDL  L+PT+ + VPR++ +I+ G
Sbjct:   309 LPLAHIYERANQILTVYF---GVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAG 365

Query:   330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
             I  A++    L+ R+F+A Y  K   +  G   + ASP+ D L F K+K RLGGR+R + 
Sbjct:   366 IINAVKTSGGLKERLFNAAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMT 422

Query:   390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELR 448
             SG +PLS EV EFL+V     + +GYG+TET C  + +   D +   G  G  +   E++
Sbjct:   423 SGASPLSPEVMEFLKVCFGGRVTEGYGMTETSCVISGMDEGDNL--TGHVGSPNPACEVK 480

Query:   449 LEEVPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPN 506
             L +VPEM Y+  D P P GE+CVRG  +F+GYYK+   T+E I  DGW HTGDIG  LP 
Sbjct:   481 LVDVPEMNYTSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPG 540

Query:   507 GVVKIIDRKKNLIKISQGEYVALEYLENVY 536
             G +KIIDRKKN+ K++QGEY+A E +ENVY
Sbjct:   541 GRLKIIDRKKNIFKLAQGEYIAPEKIENVY 570

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

DICTYBASE|DDB_G0269474 fcsB "fatty acyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 200/551 (36%), Positives = 311/551 (56%)

Query:     4 FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSV--DSDLNTAWDIFSMSVQKYPGNRML 61
             +   VE G++ ++G    G + RN   ++   S   D ++ T +D    S +KY   +  
Sbjct:    27 YGQTVEIGEKPENG----GRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCF 82

Query:    62 GWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
             G R    +G  G + W +Y    E    I   L   G +P  +VGI+  N  +W+    A
Sbjct:    83 GERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSA 142

Query:   121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
                 S   V  Y+TLG  +++++ +HAEI   F   + +++ L    +  + L+ ++CF 
Sbjct:   143 SFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKGVKVLKTIICFD 201

Query:   181 SLTAEQKEMAVQTGIKPYSWDEFLHLGK-VN-EMEILPPQPFNICTIMYTSGTSGDPKGV 238
             S+  E   +A + G+  Y++DE +  GK  N + +  PP P  + TIMYTSGT+G PKGV
Sbjct:   202 SIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGV 261

Query:   239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
             ++TH+ + + V  V  F+  ++      DV+ S+LP AH+L+RV+    F  GA++G + 
Sbjct:   262 MITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316

Query:   299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
             GD++ +  ++  L PTL  GVPRVFE+I   + K + +   L R +F+  Y  K   +  
Sbjct:   317 GDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQH 376

Query:   359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
             G+K      + DL+ F K+K  LGG++R+++SG APLS + E FLRV  C  ++QGYG +
Sbjct:   377 GFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGAS 436

Query:   419 ETCGPTTVC--FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLF 476
             E CG    C    DE   VGT GP    +E++L +VPE+GY    +   GEVC+RG ++ 
Sbjct:   437 EGCGGDA-CKRLDDES--VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSIS 493

Query:   477 SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
             SGYYK+ + TRE   DGWFHTGDIG+   +G + I+DRKKN+ K+SQGEYVA+E +E + 
Sbjct:   494 SGYYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYVAVEKIETIV 553

Query:   537 CVAPIIEDVSI 547
               +  +E V I
Sbjct:   554 VKSEYVEQVCI 564

GO:0006631 "fatty acid metabolic process" evidence=IEA;ISS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;ISS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 204/506 (40%), Positives = 288/506 (56%)

Query:    34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
             FP    ++ T  D F  +V+ Y  N+ LG R   DG  G Y W TY E   E   I S L
Sbjct:    77 FPD-HPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGL 135

Query:    94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
                G   G  VG+Y  N P+W+    AC A S + VPLYDTLGP AV F+++HA +  +F
Sbjct:   136 LFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIF 195

Query:   154 VQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEME 213
                + +  LLS        +R++V           +   TG+   S+ + L  G+ +   
Sbjct:   196 CVPQTLNILLS-FLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHP 254

Query:   214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
               PP+P +I TI YTSGT+G PKGVVLTH  +   V+G  +  + F       DVY+S+L
Sbjct:   255 FSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-----DVYISYL 309

Query:   274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
             PLAHI +R  +      G +VG+Y GD+  L DD   L+PT+   VPR++ +I++GI  A
Sbjct:   310 PLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSA 369

Query:   334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
             ++    +++R+F+  Y  K   +  G   R  S   D L F K+K +LGGR+R + SG +
Sbjct:   370 VKSSGVVKKRLFEIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGAS 426

Query:   394 PLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
             PLS +V +FLR+     + +GYG+TET C  + +   D +   G  G  +   E++L +V
Sbjct:   427 PLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLS--GHVGSPNPACEVKLVDV 484

Query:   453 PEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVK 510
             PEM Y+  D P P GE+CVRG  +F GYYK+ + TRE +  DGW HTGDIG  LP G +K
Sbjct:   485 PEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLK 544

Query:   511 IIDRKKNLIKISQGEYVALEYLENVY 536
             IIDRKKN+ K++QGEY+A E +ENVY
Sbjct:   545 IIDRKKNIFKLAQGEYIAPEKIENVY 570

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 195/524 (37%), Positives = 302/524 (57%)

Query:    36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALR 94
             S D    T +D++   + K   +  LG R  + DGK G Y W +YK+       I SAL 
Sbjct:    48 SPDGKTFTLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALV 105

Query:    95 ASGAEPGCRVGIYGANCPQWVEA-MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
               G   G R+GI+  N P+WV + M A N  SL+ V LY TLG  A+ ++++H+EI  + 
Sbjct:   106 QLGLNKGDRIGIFSINRPEWVLSDMAAMNH-SLVPVALYATLGANAIEYVVNHSEISVLL 164

Query:   154 VQDKKVKELLSPDCRSAQRLRVMVCFTSLT-AEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212
              + K V+++LS        ++ +V +  L  A   +      +K Y   +F  LG+ N  
Sbjct:   165 CEGKNVEKILS---MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPA 221

Query:   213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-DDVYLS 271
             +   P P ++CT++YTSG++G+PKGV+LTH  + + V+G +     F     + +DV++S
Sbjct:   222 QHEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGAN-----FSPAGVIPEDVHMS 276

Query:   272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331
             +LPLAH  +R +       G  +G++ G +  L +D+  L+PT L G PRV++++H+ + 
Sbjct:   277 YLPLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLW 336

Query:   332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 391
               +     L++ +F+     K + + +G      +P+ D L F K K RLGGR++ ++SG
Sbjct:   337 FTVNNDSWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSG 392

Query:   392 GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEE 451
              APL  ++ EFLR   C  +V GYGL+E  G  +V +P++   VG  GP     E++L +
Sbjct:   393 SAPLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLID 451

Query:   452 VPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 509
             VPEM Y   D P P GEVC+RG  +F GY+K+P+ T+E +  DGWFHTGDIG+   NG +
Sbjct:   452 VPEMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTL 511

Query:   510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSVS 553
              IIDRKKN+ K+SQGEYVA EYLE+V+  +P    V +   S++
Sbjct:   512 SIIDRKKNIFKLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLN 555

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0010009 "external side of endosome membrane" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IEA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;TAS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1NNV2 ACSL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 184/533 (34%), Positives = 296/533 (55%)

Query:    28 LLASNGFPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEV 86
             LL  N   S    D  T ++ F   +        LG+R        PY W TYK+V +  
Sbjct:    60 LLTDNNLVSYYFEDSKTLYEAFQRGLHASGNGNCLGYRK----PNQPYQWLTYKQVLDRA 115

Query:    87 LQIVSALRASGAEPGCR--VGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFIL 144
               + S L   G +P     +GI+  N P+W+ +  AC   S++ VPLYDTLGP A+ +I+
Sbjct:   116 QHLGSGLLQKGCKPSSDQFIGIFAQNRPEWIISEYACYTYSMVAVPLYDTLGPDAILYIV 175

Query:   145 DHAEIDFVFVQDKKVKELLSPDCRSAQR--LRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202
             + A+I  V     +  ++L  +C   +   L+ ++       E K+   + G++  +  E
Sbjct:   176 NKADIGIVICDKPEKAQILLENCEQGKTPCLKTIILMDLFDKELKDRGAKVGVEILALQE 235

Query:   203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK 262
                LG+ N  + +PP P ++C + +TSGT+G+PKG +LTHE +   V+    FL   ED 
Sbjct:   236 AEELGRNNIRKPVPPGPEDLCIVCFTSGTTGNPKGAMLTHENV---VANAAAFLRTIEDT 292

Query:   263 M--TVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP 320
             +  T  DV +S+LPLAH+ +RV++   +  GA VG++ GD+  L DD+  LKPT+   VP
Sbjct:   293 VECTTSDVSISYLPLAHMFERVVQTVMYSCGAKVGFFQGDIKLLTDDMKTLKPTIFPVVP 352

Query:   321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKAR 380
             R+  +I++ I+       P+++ + +     K+  +  G  + ++  L D L F+KV+  
Sbjct:   353 RLLNRIYDKIQSGANT--PMKKFLLNFAATMKMIEVKQGIIRNDS--LLDKLVFKKVQET 408

Query:   381 LGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP 440
             +GGR+R++++G AP+S  V +FLR      + + YG TE     T   P +    G  GP
Sbjct:   409 MGGRVRIMVTGAAPISPSVLKFLRSALGCQVFEAYGQTECSAGCTFSMPGDWT-TGHVGP 467

Query:   441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGD 499
               V + ++L++V EM Y   ++   GEVC++G  +F GY K+P+ T E+I  DGW HTGD
Sbjct:   468 PLVCNIIKLDDVEEMNYFSSNNE--GEVCIKGPNVFKGYLKDPEKTAEAIDKDGWLHTGD 525

Query:   500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552
             +G+ +PNG +KIIDRKKN+ K++QGEY+A E +ENVY  +  +  V +   S+
Sbjct:   526 VGKWMPNGTLKIIDRKKNIFKLAQGEYIAPEKIENVYIRSVAVAQVFVHGESL 578

GO:0003824 "catalytic activity" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22898	LACS1_ARATH	6, ., 2, ., 1, ., 3	0.7038	0.9891	0.8287	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.963
3rd Layer	6.2.1.3	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	553
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	0.0
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	0.0
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	0.0
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	0.0
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	1e-152
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-129
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-102
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	4e-98
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	1e-93
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	9e-88
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	2e-79
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	2e-75
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	1e-68
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	3e-56
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	4e-56
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	8e-52
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	9e-48
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	5e-44
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	9e-44
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	6e-43
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-41
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	5e-39
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	5e-39
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	3e-37
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	3e-36
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	6e-36
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-32
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	5e-32
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	9e-32
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	2e-31
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	1e-30
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	3e-30
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	8e-27
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	5e-26
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-25
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-25
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-24
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	4e-23
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	8e-22
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	1e-21
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-21
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-21
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-21
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	6e-21
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	3e-20
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	6e-20
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	1e-19
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-19
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	1e-19
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	5e-19
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	6e-19
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	1e-18
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	2e-18
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	2e-18
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	2e-18
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-18
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	5e-18
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	8e-18
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	1e-17
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	2e-17
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	3e-17
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	6e-17
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	6e-17
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	7e-17
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	1e-16
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	1e-16
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-16
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	4e-16
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	4e-16
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	5e-16
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	5e-16
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	7e-16
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	7e-16
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	9e-16
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	3e-15
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	7e-15
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	2e-14
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	2e-14
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	2e-14
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	2e-14
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	3e-14
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	4e-14
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	6e-14
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	1e-13
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	2e-13
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	2e-13
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	5e-13
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	5e-13
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	2e-12
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-12
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	8e-12
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	9e-12
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	2e-11
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	7e-11
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	9e-11
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	9e-11
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-10
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	1e-10
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	1e-10
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	3e-10
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	3e-10
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	4e-10
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	7e-10
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	8e-10
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	1e-09
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-09
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	4e-09
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	7e-09
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	9e-09
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	9e-09
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	1e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-08
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	1e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-08
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	2e-08
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	3e-08
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	5e-08
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	7e-08
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	8e-08
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	1e-07
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	1e-07
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-07
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-07
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-07
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-07
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-07
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-07
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	3e-07
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-07
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	4e-07
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	6e-07
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	7e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	8e-07
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	8e-07
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-06
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	2e-06
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	2e-06
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	3e-06
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	4e-06
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	4e-06
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	5e-06
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	5e-06
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	6e-06
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	6e-06
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	6e-06
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	6e-06
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	7e-06
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	7e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-05
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	1e-05
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	3e-05
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-05
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	8e-05
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	9e-05
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-04
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	1e-04
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	1e-04
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	2e-04
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	2e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	2e-04
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	2e-04
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	2e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	3e-04
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	3e-04
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	3e-04
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	3e-04
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	4e-04
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	5e-04
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	5e-04
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	5e-04
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	6e-04
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	7e-04
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	8e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	0.001
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	0.001
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	0.001
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.001
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	0.002
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	0.002
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	0.002
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	0.002
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	0.002
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	0.002
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	0.002
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	0.002
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	0.003
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.003
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.003
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	0.003
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	0.004
PLN03052	728	PLN03052, PLN03052, acetate--CoA ligase; Provision	0.004
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	0.004

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 1105 bits (2860), Expect = 0.0
 Identities = 433/545 (79%), Positives = 487/545 (89%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAAQVEEG +GKDGKPSVGPVYRNLL+  GFP +DSD+ TAWDIFS SV+KYP N+M
Sbjct: 1   MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VDGK GPY+WKTYKEVYEEVLQI SALRASGAEPG RVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SLICVPLYDTLGPGAV++I+DHAEIDFVFVQDKK+KELL PDC+SA+RL+ +V FT
Sbjct: 121 CAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           S+T E+ + A Q G+K YSW +FLH+GK N  E  PP+P +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE +ATFV GVDLF++QFEDKMT DDVYLSFLPLAHILDR+IEEYFFR+GASVGYYHGD
Sbjct: 241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTLLAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYKYKLAWMN GY
Sbjct: 301 LNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
             ++ASP+AD LAFRKVKA+LGGRLRL+ISGGAPLSTE+EEFLRVT CAF+VQGYGLTET
Sbjct: 361 SHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
            GPTT+ FPDEMCM+GT G  +VY+ELRLEEVPEMGY PL +PP GE+CVRGK LFSGYY
Sbjct: 421 LGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALEYLENVY   P
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNP 540

Query: 541 IIEDV 545
           I+ED+
Sbjct: 541 IVEDI 545

Length = 660

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  649 bits (1677), Expect = 0.0
 Identities = 279/547 (51%), Positives = 369/547 (67%), Gaps = 5/547 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
            + +  +VEE +    GKPS GPVYR++ A +G   + +D+++ W  FS +V+KYP N+M
Sbjct: 2   AETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQM 61

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R   D K GPYVW TYKEVY+  ++I SA+R+ G  PG R GIYG+NCP+W+ AMEA
Sbjct: 62  LGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEA 121

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS--PDCRSAQRLRVMVC 178
           CN+  +  VPLYDTLG  AV FI++HAE+   FVQ+ K+  +LS  P C S   L+ +V 
Sbjct: 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSS--NLKTIVS 179

Query: 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           F  +++EQKE A + G+  +SW+EF  +G ++  E+ P Q  +ICTIMYTSGT+G+PKGV
Sbjct: 180 FGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGV 238

Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
           +LT+  I   V   D  L   +   T +D Y S+LPLAH+ D+VIE Y   +GAS+G++ 
Sbjct: 239 ILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQ 298

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
           GD+  L +D+  LKPT+  GVPRV+++I+ GI + +     LR+++FD  Y YKL  +  
Sbjct: 299 GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRK 358

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
           G KQ EASP  D L F K+K  LGGR+RL++SG APL   VEEFLRVT C+ L QGYGLT
Sbjct: 359 GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLT 418

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           E+CG       +   MVGT G      E RLE VPEMGY  L D P GE+C+RG TLFSG
Sbjct: 419 ESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSG 478

Query: 479 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 538
           Y+K  DLT E +IDGWFHTGDIG+  PNG +KIIDRKKN+ K+SQGEYVA+E LEN Y  
Sbjct: 479 YHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSR 538

Query: 539 APIIEDV 545
            P+I  +
Sbjct: 539 CPLIASI 545

Length = 660

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  633 bits (1634), Expect = 0.0
 Identities = 285/544 (52%), Positives = 386/544 (70%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K F  QVEEGKEG DG+PSVGPVYR++ A +GFP+    +++ WD+F MSV+KYP N ML
Sbjct: 5   KKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct: 65  GRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG GAV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T ++GV   L      +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L +DL ELKPT+   VPRV ++++ G++K L +   L++ +FD+ + YK   M  G  
Sbjct: 305 KLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQS 364

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
             EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             T V  PDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYK 484

Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
             DLT+E +IDGW HTGD+G+  PNG +KIIDRKKN+ K+SQGEYVA+E +EN+Y     
Sbjct: 485 REDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544

Query: 542 IEDV 545
           ++ V
Sbjct: 545 VDSV 548

Length = 666

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  604 bits (1559), Expect = 0.0
 Identities = 222/475 (46%), Positives = 297/475 (62%), Gaps = 45/475 (9%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           GPY W +YKEV E  L I S LRA G +PG ++GI+  N P+W+   +AC + SL+ VPL
Sbjct: 1   GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
           YDTLG  A+ +IL+  EI  VF    KV                                
Sbjct: 61  YDTLGEEAIEYILNETEISIVFCDAVKV-------------------------------- 88

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
                 YS++E   LGK N++   PP+P ++ TIMYTSGT+G+PKGV+LTH  I   V+G
Sbjct: 89  ------YSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL 311
           ++  + +F   +   DVY+S+LPLAHI +RV+E      G  +GYY GD   L+ D+ EL
Sbjct: 143 INKIVPEF---IGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
           KPT+  GVPRV ++I++GI   +     L+R +F+  Y YKLA +  G     ASPL D 
Sbjct: 200 KPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRG--HGYASPLWDK 257

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           L F+K+KA LGGR+RL++SGGAPLS + +EFLRV     ++QGYGLTETC   T+  P +
Sbjct: 258 LVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGD 317

Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 490
               G  GP     E++L +VPEMGY   DDPP GE+C+RG  +F GYYKNP+ T E+  
Sbjct: 318 TT-TGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFD 376

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDV 545
            DGWFHTGDIG+ LP+G +KIIDRKKNL K+SQGEYVALE LEN+Y  +P+++ +
Sbjct: 377 EDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQI 431

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  451 bits (1162), Expect = e-152
 Identities = 213/522 (40%), Positives = 302/522 (57%), Gaps = 23/522 (4%)

Query: 24  VYRNLLAS----NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTY 79
           VYR+  +     + FP    ++ T  D F  +V+ +   + LG R  VDG  G Y W TY
Sbjct: 23  VYRSARSPLKLVSRFPDHP-EIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTY 81

Query: 80  KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGA 139
            E       I S L   G   G  VG+Y  N P+W+    AC+A S + VPLYDTLGP A
Sbjct: 82  GEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDA 141

Query: 140 VNFILDHAEIDFVFVQDKKVKELLS--PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
           V FI++HAE+  +F   + +  LLS   +  S   +R++V           +   TG++ 
Sbjct: 142 VKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPS---VRLIVVVGGADEPLPSLPSGTGVEI 198

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            ++ + L  G+ +     PP+P ++ TI YTSGT+G PKGVVLTH  +   V+G  L   
Sbjct: 199 VTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTK 258

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            +       DV++S+LPLAHI +RV +      G +VG+Y GD   L DDL  L+PT+  
Sbjct: 259 FY-----PSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFC 313

Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 377
            VPR++ +I++GI  A++E   L+ R+F+A Y  K   +  G   +  SP+ D L F K+
Sbjct: 314 SVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENG---KNPSPMWDRLVFNKI 370

Query: 378 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVG 436
           KA+LGGR+R + SG +PLS +V EFLR+     +++GYG+TET C  + +   D +   G
Sbjct: 371 KAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLS--G 428

Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESI-IDGW 494
             G  +   E++L +VPEM Y+  D P P GE+CVRG  +F GYYK+   TRE I  DGW
Sbjct: 429 HVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGW 488

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
            HTGDIG  LP G +KIIDRKKN+ K++QGEY+A E +ENVY
Sbjct: 489 LHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVY 530

Length = 651

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  389 bits (1001), Expect = e-129
 Identities = 173/490 (35%), Positives = 261/490 (53%), Gaps = 41/490 (8%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G +   TY+E+YE V  + S L + G   G RV I+ AN P+W  A  A  AL  + VP+
Sbjct: 41  GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQD----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
           Y T  P  + +IL+ +E   +FV++      V  +L  DC     L V++       E K
Sbjct: 101 YSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLE-DCPKVVDLIVIIDLVREAVEAK 159

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEM----EILPPQPFNICTIMYTSGTSGDPKGVVLTHE 243
            +     +     DE + L  ++       I PP+P ++ TI+YTSGT+G PKGV+LTH 
Sbjct: 160 AL-----VLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHR 214

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE-EYFFRRGASVGYYHGDLN 302
            +   V+G+D  L          D  LSFLPLAHI +R  E       G +V +   D  
Sbjct: 215 NLLAQVAGIDEVLPPI----GPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK-EDPR 269

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM---G 359
            L +DL E++PT++ GVPRV+EK+++GI + + +   +RR++F    K     ++    G
Sbjct: 270 TLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLG 329

Query: 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTCCAFLVQGYGLT 418
                   +AD L FRK++  LGGR+R  +SGGAPLS E+  F R +     +++GYGLT
Sbjct: 330 GGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIP--ILEGYGLT 387

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           ET    +V  PD   ++GT G      E+++ +              GE+ VRG  +  G
Sbjct: 388 ETSAVVSVNPPDRF-VLGTVGKPLPGIEVKIADD-------------GEILVRGPNVMKG 433

Query: 479 YYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 537
           YYKNP+ T E+   DGWF TGD+G++  +G + I  RKK LIK+S G+ +A E +E+   
Sbjct: 434 YYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLA 493

Query: 538 VAPIIEDVSI 547
            +P+IE + +
Sbjct: 494 KSPLIEQICV 503

Length = 613

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  315 bits (809), Expect = e-102
 Identities = 151/479 (31%), Positives = 218/479 (45%), Gaps = 121/479 (25%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G +   T+ E+ E V ++ + L A G +PG RV I   N P+WV A  A  A   + VP+
Sbjct: 1   GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
           Y T  P  V +IL+ +    VFV+DK       PD      L  ++ +TS T        
Sbjct: 61  YPTSSPEEVAYILNDSGARVVFVEDK-------PD-----DLATLI-YTSGT-------- 99

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
            TG                                       +PKGV+LTH  +    + 
Sbjct: 100 -TG---------------------------------------NPKGVMLTHRNLLAQAAA 119

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHGDLNALRDDLME 310
           +   +      ++  D  LSFLPLAH+ ++ + EY     GA V  +      L +DL E
Sbjct: 120 LLEVIP-----LSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARV-NFAESPETLLEDLRE 173

Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
           ++PT+   VPRV+EKI+ GI+  +    PL+R++F                         
Sbjct: 174 VRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFRW----------------------- 210

Query: 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVC 427
                   A  GGRLR  +SGGAPL  EV EF R   +     +++GYGLTET G  TV 
Sbjct: 211 --------ALGGGRLRFAVSGGAPLPPEVLEFFRALGIP----ILEGYGLTETSGVATVN 258

Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
            P ++ + GT G      E+R+ E              GE+ VRG  +  GYYKNP+ T 
Sbjct: 259 RPGDIRI-GTVGKPLPGVEVRIAED-------------GEILVRGPNVMKGYYKNPEATA 304

Query: 488 ESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDV 545
           E++  DGW HTGDIG++  +G + I DRKK+LI  + G+ +A + +EN    +P I   
Sbjct: 305 EALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQA 363

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  312 bits (801), Expect = 4e-98
 Identities = 160/483 (33%), Positives = 234/483 (48%), Gaps = 48/483 (9%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E++E ++     L   G   G  V IY     +W+ ++    + S++   +Y  LG 
Sbjct: 123 TYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGE 182

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLS-------PDCRSAQRLRVMVCFTSLTAEQKEMA 190
            A+ + L   E   +    K V  LL        P+         ++   SL A      
Sbjct: 183 DALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-------TIIYLDSLPASVDTEG 235

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIAT 247
            +      +W + +  G           P N   +  IMYTSGT+GDPKGV+ TH ++  
Sbjct: 236 CRL----VAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTA 291

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD- 306
            +  ++  L+        D+ Y S+LPLAHI++  +   F  RGA +G+  G    L D 
Sbjct: 292 GILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTDT 349

Query: 307 ------DLMELKPTLLAGVPRVFEKIHEGIKKALEELRP----LRRRIFDALYKYKLAWM 356
                 DL E +P  L GVPR+F+     IKKA+E   P    L+RR+FD  Y+ +L  +
Sbjct: 350 FARPHGDLTEFRPVFLIGVPRIFDT----IKKAVEAKLPPVGSLKRRVFDHAYQSRLRAL 405

Query: 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG 416
             G      +P  +   F   +A LGGR+R ++SGG PLS   +EF+ V     ++QG+G
Sbjct: 406 KEGKD----TPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNV-VFGMVIQGWG 460

Query: 417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTL 475
           LTET     +    ++      G +    E++L +  E  Y   D P P GE+ +RG  L
Sbjct: 461 LTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLDTEE--YKHTDTPEPRGEILLRGPFL 517

Query: 476 FSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
           F GYYK  +LTRE +  DGWFHTGD+G I  NG ++II R K L K   GEY+ALE LE 
Sbjct: 518 FKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEA 577

Query: 535 VYC 537
           +Y 
Sbjct: 578 LYG 580

Length = 700

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  300 bits (770), Expect = 1e-93
 Identities = 187/555 (33%), Positives = 283/555 (50%), Gaps = 63/555 (11%)

Query: 41  LNTAWD-------IFSMSVQKYPGNRMLGWRPFV--------DGK------FGPYVWKTY 79
           + T W+       +F  S +KY   R+LG R  +        DG+       G Y W TY
Sbjct: 50  VETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITY 109

Query: 80  KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGA 139
            +V+E V    S L A G     RV I+     +W+ A++ C   ++  V +Y +LG  A
Sbjct: 110 GQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEA 169

Query: 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG-IKPY 198
           +   L+  E+  V    K++K+L+    +     RV +       +       +      
Sbjct: 170 LCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRV-IYMDDEGVDSDSSLSGSSNWTVS 228

Query: 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
           S+ E   LGK N ++   P P +I  IMYTSG++G PKGV++TH  I   V+GV      
Sbjct: 229 SFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGV------ 282

Query: 259 FEDKMTV------DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD------ 306
               MTV      +DVYL++LPLAHIL+   E      GA++GY  G    L D      
Sbjct: 283 ----MTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGY--GSPLTLTDTSNKIK 336

Query: 307 -----DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN---M 358
                D   LKPTL+  VP + +++ +G++K ++    L +++FD  YK +LA +     
Sbjct: 337 KGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWF 396

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
           G    E   L D L F+K++A LGGR+R ++SGGAPLS + + F+ +   A + QGYGLT
Sbjct: 397 GAWGLEKL-LWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLT 455

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTLFS 477
           ETC   T    D+   VG  GP      ++L    E GY   D P P GE+ + G ++  
Sbjct: 456 ETCAGATFSEWDDTS-VGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTL 514

Query: 478 GYYKNPDLTRESI-IDG----WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL 532
           GY+KN + T E   +D     WF+TGDIGQ  P+G ++IIDRKK+++K+  GEYV+L  +
Sbjct: 515 GYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKV 574

Query: 533 ENVYCVAPIIEDVSI 547
           E    V+P ++++ +
Sbjct: 575 EAALSVSPYVDNIMV 589

Length = 696

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  276 bits (708), Expect = 9e-88
 Identities = 124/476 (26%), Positives = 193/476 (40%), Gaps = 74/476 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+ E   ++ +ALRA G  PG RV I   N P+WV A+ A        VPL  +L  
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ +E   +   D+ + +LL    +    L +++                G   
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGD------------DGEGL 108

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
              D+ L  G   E    P  P ++  I+YTSGT+G PKGV+LTH  +    +G+     
Sbjct: 109 DLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERF- 167

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPT 314
                +T  D  L  LPL               G ++        D   L D + + K T
Sbjct: 168 ----GLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVT 223

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
           +L GVP +   + +  ++   +L                                     
Sbjct: 224 VLYGVPTLLRLLLKAPEEKKYDLS------------------------------------ 247

Query: 375 RKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
                     LRLV+SGG PL  E+            LV GYG TET    T   P +  
Sbjct: 248 ---------SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPE 298

Query: 434 M-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 491
           +  G+ G       + ++ + E G  P+     GE+C+RG  +  GY  +P+LT E  + 
Sbjct: 299 VKPGSIGR--PLPGVEVKVLDEEG-EPVPPGEVGELCIRGPGVARGYLNDPELTAERFVE 355

Query: 492 DGWF--HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDV 545
           DGW    TGD+G+   +G ++I+ RK + +KI  GE +    +E V    P + + 
Sbjct: 356 DGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGVAEA 410

Length = 412

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  257 bits (660), Expect = 2e-79
 Identities = 146/497 (29%), Positives = 223/497 (44%), Gaps = 93/497 (18%)

Query: 68  DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
            G++  Y   T+ +V ++  +I +AL++ G EPG R+ I   NC +W+ A  A      +
Sbjct: 1   GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57

Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPD--CRSAQRLRVMVCFTS 181
            VPLY TL    + ++L+H++   +FV        +K  +              +     
Sbjct: 58  SVPLYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILFPYSTLKDH-- 115

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF--NICTIMYTSGTSGDPKGVV 239
                           Y WD+ L      E     P P   ++ TI+YTSGT+G PKGV+
Sbjct: 116 ----------------YKWDDLL---AATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVM 156

Query: 240 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEY-FFRRGASVGYYH 298
           L+    A    G    +      +T +D  LS+LPLAHI +RVI E      GA V ++ 
Sbjct: 157 LSFGAFAFAAQGTIEII-----GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEV-FFV 210

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGI-----KKALEELRPLRRRIFDALYKYKL 353
             L+    DL   +PT+   VPR++ K  +GI      + L  L  L+  I  +L K   
Sbjct: 211 ESLDTFAADLQRARPTVFFSVPRLWTKFQQGILAKLPPEKLNLL--LKIPILSSLVK--- 265

Query: 354 AWMNMGYKQREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLR---VTCCA 409
                                +K+   LG  + RL  SG AP+   +  + R   +    
Sbjct: 266 ---------------------KKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLP--- 301

Query: 410 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 469
            + +GYG+TE    +T+ +P +   +GT G      EL++ E              GE+ 
Sbjct: 302 -ICEGYGMTENFAYSTLNYPGDR-RIGTVGKPIPGVELKISED-------------GEIL 346

Query: 470 VRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
           +R   L SGYYK+P+ T E+   DGW HTGD G+I  +G +KI  R K L K S+G+YVA
Sbjct: 347 IRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVA 406

Query: 529 LEYLENVYCVAPIIEDV 545
              +EN+    P +E V
Sbjct: 407 PAPIENLLSANPHVEQV 423

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  248 bits (634), Expect = 2e-75
 Identities = 128/467 (27%), Positives = 192/467 (41%), Gaps = 73/467 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+     ++ +AL+A G +PG RV I   N P+++ A  A      + VPL   L P
Sbjct: 40  TYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTP 99

Query: 138 GAVNFILDHAEIDFVFVQD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             + +IL+ A    +        + E ++        + ++                   
Sbjct: 100 RELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVG-------------DADDR 146

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            P + +     G   + +  P  P ++  ++YTSGT+G PKGVVLTH  +   ++     
Sbjct: 147 LPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNL---LANAAGI 203

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
                  +T DDV LS+LPL HI            G  VG     L A           L
Sbjct: 204 AAALGGGLTPDDVVLSWLPLFHIF-----------GLIVG-----LLAP----------L 237

Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM----NMGYKQREASPLADL 371
           L G   V           L         +   + KYK+  +        +      L D 
Sbjct: 238 LGGGTLVL----------LSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRE------LLDN 281

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430
                    L   LRLV+SGGAPL  E+ E F        +++GYGLTET    T+  PD
Sbjct: 282 PEKDDDD--LSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPD 339

Query: 431 EMC-MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
           ++    G+ G      E+R+  V   G   L     GE+ VRG  +  GY+  P+ T E+
Sbjct: 340 DLLAKPGSVGRPLPGVEVRI--VDPDGGEVLPGEV-GEIWVRGPNVMKGYWNRPEATAEA 396

Query: 490 II-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
              DGW  TGD+G +  +G + I+ R K+LI    GE +  E +E V
Sbjct: 397 FDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISG-GENIYPEEIEAV 442

Length = 534

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  231 bits (592), Expect = 1e-68
 Identities = 149/493 (30%), Positives = 225/493 (45%), Gaps = 55/493 (11%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPLYDTLG 136
           TYK+ YE   Q   A    G E    VGI G N P+W   A+ A  A   I V +Y T  
Sbjct: 10  TYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGG-IAVGIYTTNS 68

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
           P A  ++ + +E + + V + K  + +         L+ ++ +     ++KE        
Sbjct: 69  PEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQY-REPLKEKE------PN 121

Query: 197 PYSWDEFLHLGK----VNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
            YSW EF+ LG+         I+  Q P   CT++YTSGT+G PKGV+L+H+ I      
Sbjct: 122 LYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKA 181

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG--YYHGDLNALRDDLM 309
               +D         +  +S+LPL+HI  ++++ +      SVG   Y    +AL+  L+
Sbjct: 182 AVKHMDLRTVG---QESVVSYLPLSHIAAQILDIWL---PISVGGCVYFAQPDALKGTLV 235

Query: 310 ----ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF----DALYKYKLAWMNMGYK 361
               E++PT   GVPRV+EKI E +K    +   L+R+I         +  L  M     
Sbjct: 236 KTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGGESP 295

Query: 362 QREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLRVTCCAFL------VQG 414
                 LA  L F+KV+  LG  R +   +G AP+S E  EF       FL      ++ 
Sbjct: 296 PPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEF-------FLSLNIPIMEL 348

Query: 415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 474
           YG++ET GP TV  P     + + G      E ++      G         GE+C+ G+ 
Sbjct: 349 YGMSETSGPHTVSNPQNY-RLLSCGKALPGCETKIHNPDADGI--------GEICIWGRH 399

Query: 475 LFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
           +F GY    + T E+I  DGW H+GD+G +  +G + I  R K LI  + GE V    +E
Sbjct: 400 VFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPPVPIE 459

Query: 534 N-VYCVAPIIEDV 545
             V    PII + 
Sbjct: 460 EAVKKELPIISNA 472

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  195 bits (498), Expect = 3e-56
 Identities = 134/513 (26%), Positives = 195/513 (38%), Gaps = 138/513 (26%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           D+   + +++P    L    F   K       TY E+ E   +  + L+  G + G RV 
Sbjct: 3   DLLERAARRFPDRPAL---TFFGRKL------TYAELDELSDRFAAYLQQLGVKKGDRVA 53

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +   NCPQ+  A         + VP         VN +    E++     D   K     
Sbjct: 54  LMLPNCPQFPIAYFGILKAGAVVVP---------VNPLYTPRELEHQL-NDSGAK----- 98

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
                    V++   S        A+ +G                    +   P ++  +
Sbjct: 99  ---------VLIVAISFED-----ALASGAPLP--------------LPVELSPDDLAVL 130

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
            YT GT+G PKG +LTH  +   V+ V       +D    +D +L+ LPL HI       
Sbjct: 131 QYTGGTTGVPKGAMLTHRNL---VANVQQIAAWVKDLREGEDRFLTALPLFHI------- 180

Query: 286 YFFRRGASVGYYHGDLNAL----RD-DLMEL----KPTLLAGVPRVFEKIHEGIKKALEE 336
           +       +G   G  N L    R  ++++     + T+  GVP                
Sbjct: 181 FGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVP---------------- 224

Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
                      LY                     LL   + K      LRL ISGGAPL 
Sbjct: 225 ----------TLYNA-------------------LLNHPEFKKYDFSSLRLCISGGAPLP 255

Query: 397 TEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEVP 453
            EV E F   T    LV+GYGLTET   TTV   D     G+ G P+     ++  +E  
Sbjct: 256 VEVAERFEEKTGAP-LVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGN 314

Query: 454 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513
           E+   P  +   GE+ VRG  +  GY+  P+ T E + DGW  TGDIG +  +G   I+D
Sbjct: 315 EL---PPGEV--GELVVRGPQVMKGYWNRPEETAEVLTDGWLRTGDIGYMDEDGYFYIVD 369

Query: 514 RKKNLIKISQGEYVALEYLENVYCVAP-IIEDV 545
           RKK++I I  G +       NVY   P  IE+V
Sbjct: 370 RKKDMI-IVGG-F-------NVY---PREIEEV 390

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  196 bits (501), Expect = 4e-56
 Identities = 131/499 (26%), Positives = 191/499 (38%), Gaps = 116/499 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++ +ALRA G + G RV ++  N  +++EA  A   +  +  P+   L P
Sbjct: 33  TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ AE   V V  + V  L      +A   ++    T +       A     + 
Sbjct: 93  EEIAYILNDAEDRVVLVDSEFVPLL------AAILPQLPTVRTVIVEGDGPAA-PLAPEV 145

Query: 198 YSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
             ++E L        +       +      ++YTSGT+G PKGVVL+H            
Sbjct: 146 GEYEELL----AAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSH---RNLFLHSLA 198

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGY---YHG---------DL 301
                  K++ DDVYL  +P+ H+             A  + Y     G         D 
Sbjct: 199 VCAWL--KLSRDDVYLVIVPMFHV------------HAWGLPYLALMAGAKQVIPRRFDP 244

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L D +   + T    VP +                                   M  K
Sbjct: 245 ENLLDLIETERVTFFFAVPTI---------------------------------WQMLLK 271

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTET 420
              A    D              LRLVI GGA L    + EF         VQGYG+TET
Sbjct: 272 APRAYF-VDF-----------SSLRLVIYGGAALPPALLREFKEKFGIDL-VQGYGMTET 318

Query: 421 CGPTTVCFPDE--------MCMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGE 467
               +V  P++            G   P  V  E R+     +E+P  G         GE
Sbjct: 319 SPVVSVLPPEDQLPGQWTKRRSAGRPLP-GV--EARIVDDDGDELPPDGGEV------GE 369

Query: 468 VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 527
           + VRG  L  GY+  P+ T E+I  GW HTGD+G I  +G + I DR K++I IS GE +
Sbjct: 370 IIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITDRIKDVI-ISGGENI 428

Query: 528 -ALEYLENVYCVAPIIEDV 545
              E LE+     P + +V
Sbjct: 429 YPRE-LEDALYGHPAVAEV 446

Length = 521

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  188 bits (480), Expect = 8e-52
 Identities = 120/360 (33%), Positives = 184/360 (51%), Gaps = 16/360 (4%)

Query: 187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246
           KE A + GI    +D+     K    +I    P  I +I+YTSGTSG PKGV+L+++ + 
Sbjct: 272 KEKAKKLGISIILFDDMTK-NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLY 330

Query: 247 TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 306
             V  V L       K      +LS+LP++HI +RVI    F  G ++  +  D+N    
Sbjct: 331 NTV--VPLCKHSIFKKYNPKT-HLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSK 387

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
           D+   K  +LAGVP+VF +I+  I   +  L PL+R +   +   + +  N G+ +    
Sbjct: 388 DIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKF--- 444

Query: 367 PLADLLAF-RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT 425
            L  +     K+K ++   L ++++GG  LS ++ E L V       QGYGLTET GP  
Sbjct: 445 -LEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIF 503

Query: 426 VCFPDEMCMVGTAGPVS--VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP 483
           V   D+       GP+S     ++R  E     Y   D  P GE+ ++  ++FSGY+   
Sbjct: 504 VQHADDNNTESIGGPISPNTKYKVRTWET----YKATDTLPKGELLIKSDSIFSGYFLEK 559

Query: 484 DLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
           + T+ +   DG+F TGDI QI  NG +  +DR K L+K+SQGEY+  + L N+Y     I
Sbjct: 560 EQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFI 619

Length = 746

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  173 bits (440), Expect = 9e-48
 Identities = 119/482 (24%), Positives = 190/482 (39%), Gaps = 84/482 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ ++ ++ L++   LR  G + G  V +   N  ++      C A   I      +  P
Sbjct: 12  TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTP 71

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +   L  ++   +F  D    + +    +    +  ++   S        A    ++ 
Sbjct: 72  DELAHQLKISKPKLIFC-DPDELDKVKEAAKELGPVVRIIVLDS--------APDGVLRI 122

Query: 198 YSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
               E        E E  P    +       ++Y+SGT+G PKGV+L+H+ I   ++ + 
Sbjct: 123 EDLLEPRLGA---EDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNI---IANLS 176

Query: 254 LFLDQF-EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELK 312
              D    +  + +DV L+FLP  H                +                  
Sbjct: 177 QVQDTLKGNPDSSNDVVLTFLPFYHA-------------YGLTTTLA------------- 210

Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY-----KYKLAWMNMGYKQREASP 367
            +LL G   +                    +     +     KYK+  + +        P
Sbjct: 211 -SLLCGATVIIM-----------------PKFDSETFLKLIEKYKVTSLFL------VPP 246

Query: 368 LADLLAFRKV--KARLGGRLRLVISGGAPLSTEVEEFLRV-TCCAFLVQGYGLTETCGPT 424
           +A  LA   +  K  L   LR++ SG APLS E++E LR       + QGYG+TET   T
Sbjct: 247 IAVALAKSPLVDKYDLSS-LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPAT 305

Query: 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           T+  P +    G+ G +    E ++  V E G   L     GE+CV+G  +  GY  NP+
Sbjct: 306 TLTPPGD-EKPGSVGRLVPNVEAKI--VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPE 362

Query: 485 LTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
            T+E+I  DGW HTGDIG    +G   I+DRKK LIK  +G  V    LE V    P + 
Sbjct: 363 ATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKY-KGYQVPPAELEAVLLEHPKVA 421

Query: 544 DV 545
           D 
Sbjct: 422 DA 423

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  163 bits (414), Expect = 5e-44
 Identities = 119/462 (25%), Positives = 179/462 (38%), Gaps = 95/462 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V +  +AL A G   G RV I+  N P WV A         + VPL      
Sbjct: 32  TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTA 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               +IL   +   +FV        L  D  +  RL  +        E+         K 
Sbjct: 92  DEAAYILARGDAKALFVLG----LFLGVDYSATTRLPALEHVVICETEE---DDPHTEKM 144

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            ++ +FL  G   E       P ++  I++TSGT+G PKG +LTH  + +  +    +L 
Sbjct: 145 KTFTDFLAAGDPAERA-PEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLG 203

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF---------FRRGASVGYYHGDLNALRDDL 308
                +T  D YL+  P  H+        F           RGA++       +   D++
Sbjct: 204 -----LTEGDRYLAANPFFHV--------FGYKAGVNAPLMRGATI-LPLPVFDP--DEV 247

Query: 309 MEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
             L    + T+L G P                           +Y   L      +  R 
Sbjct: 248 FRLIETERITVLPGPP--------------------------TMYNSLLQ-----HPDRS 276

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGA----PLSTEVEEFLRVTCCAFLVQGYGLTET 420
           A  L+ L              RL ++G A     L    E  L V     ++ GYGL+E 
Sbjct: 277 AEDLSSL--------------RLAVTGAASMPVALLERFESELGV---DIVLTGYGLSEA 319

Query: 421 CGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
            G TT    D+    + GT G      E ++  V E+G   +     GE+ VRG  +  G
Sbjct: 320 SGVTTFNRLDDDRKTVAGTIGTAIAGVENKI--VNELG-EEVPVGEVGELLVRGPNVMKG 376

Query: 479 YYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLI 519
           YY +P+ T  +I  DGW HTGD+G++   G + I+DRKK++ 
Sbjct: 377 YYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMF 418

Length = 513

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  160 bits (408), Expect = 9e-44
 Identities = 125/480 (26%), Positives = 190/480 (39%), Gaps = 123/480 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ +   ++ +AL   G  PG  V     N  ++V    AC  +  +  P+      
Sbjct: 3   TYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRE 62

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + FIL  A                        R RV+                    P
Sbjct: 63  RELGFILRQA------------------------RARVLFV------------------P 80

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFL 256
             +  F +             P ++  ++YTSGT+G+PKGV+ TH T+ A   S V+   
Sbjct: 81  DEFRGFDYAA----------MPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERL- 129

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
                 +T DDV L   PLAHI                G+ +G         +EL   LL
Sbjct: 130 -----GLTPDDVVLMPSPLAHI---------------TGFLYG---------LEL--PLL 158

Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LADLLAFR 375
            G   V            +   P   R  + + ++ + +  MG     A+P LADLLA  
Sbjct: 159 LGATVVL----------QDRWDP--ARALELIREHGVTFT-MG-----ATPFLADLLAAA 200

Query: 376 KVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EM 432
                    LR+ + GGAP+  E             +V+ YG+TE     TV  PD  + 
Sbjct: 201 DAAGPDLPSLRVFLCGGAPVPRELARRAAEALGAK-VVRAYGMTE-VPLVTVGTPDDPDD 258

Query: 433 CMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
               T G      E+R+      +VP     P ++   GE+ VRG  LF GY   PD T 
Sbjct: 259 KRAATDGRPVPGVEVRIVDDDGNDVP-----PGEE---GELQVRGPQLFLGYLDPPDNTE 310

Query: 488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
               DGWF TGD+G++  +G ++I  RKK++I I  GE ++   +E++    P + +V++
Sbjct: 311 AFTDDGWFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIEDLLLRHPAVAEVAV 369

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  155 bits (395), Expect = 6e-43
 Identities = 97/320 (30%), Positives = 138/320 (43%), Gaps = 60/320 (18%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +   I+YTSGT+G PKGVVL+H      ++             T  DV LS LPL H++ 
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSH---RNLLANAQALAQAIGL--TEGDVLLSVLPLFHVVG 55

Query: 281 RVIEEYF-FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
                      G +V  Y G    L   + + + + T+L GVP +++ +           
Sbjct: 56  GGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL----------A 105

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
           +    R       Y L+                              LRL+ISGG PLS 
Sbjct: 106 KAAEDR------GYDLS-----------------------------SLRLLISGGEPLSP 130

Query: 398 EV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
           E+ E F        +++GYGLTET   T+     E+   GT G      E+R+  V E G
Sbjct: 131 ELLERFEERPGAP-ILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRV--VDEEG 187

Query: 457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
             PL     GE+ VRG  +  GY+ NP  T  +   DGW+ TGD+G +   G + I  R 
Sbjct: 188 -KPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRS 246

Query: 516 KNLIKISQGEYVALEYLENV 535
           K+LIK+  GE V    +E+V
Sbjct: 247 KDLIKVG-GENVYPAEVESV 265

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  156 bits (396), Expect = 2e-41
 Identities = 121/497 (24%), Positives = 190/497 (38%), Gaps = 114/497 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G     TY + Y  V ++ +AL + G +PG RV     N  + +E   A   +  +   L
Sbjct: 21  GSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTL 80

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
              L P  + +I++HAE   +FV D     LL      A RL  +           +M  
Sbjct: 81  NPRLSPEQIAYIINHAEDKVIFV-DDDFLPLLE---AIAPRLPTVKAVVVYDDA--DMPE 134

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFN-ICTIMYTSGTSGDPKGVVLTHETIA--TF 248
            +    Y+++E L   + +     P    N    + YTSGT+G+PKGVV +H ++   T 
Sbjct: 135 TSLPNVYAYEELL--EEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTL 192

Query: 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY----------- 297
            S +   L      ++  D  L  +P+ H+               + Y            
Sbjct: 193 ASALPDSLG-----LSESDTVLPVVPMFHVN-----------AWGLPYAATMVGAKLVLP 236

Query: 298 --HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355
             + D  +L D + E K T+ AGVP +                                W
Sbjct: 237 GRYLDPASLLDLIEEEKVTVSAGVPTI--------------------------------W 264

Query: 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQ 413
           + +            L         L    R+V+ G A   + +E+     V     ++ 
Sbjct: 265 LGL------------LNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEERGVE----VIH 308

Query: 414 GYGLTETCGPTTVCFPDEMCMVG-----------TAGPVSVYSELRL-----EEVPEMGY 457
            +G+TET    TV       +V              G      ELR+      E+P  G 
Sbjct: 309 AWGMTETSPLGTVSRLKPH-LVDLPEEEKLELRAKQGRPVPGVELRIVDDEGNELPWDGK 367

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
           +       GE+ VRG  +   YYK+P+ T E   DGWF TGD+  I  +G ++I DR K+
Sbjct: 368 TV------GELVVRGPWVTGSYYKDPEKTEELTRDGWFRTGDVAVIDEDGYIQITDRAKD 421

Query: 518 LIKISQGEYVALEYLEN 534
           +IK S GE+++   LEN
Sbjct: 422 VIK-SGGEWISSVELEN 437

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  146 bits (372), Expect = 5e-39
 Identities = 91/345 (26%), Positives = 131/345 (37%), Gaps = 81/345 (23%)

Query: 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
           +  L P      TI++TSG++G PK VV T         G    L      +T DD +L 
Sbjct: 69  LADLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENL-----GLTPDDNWLL 123

Query: 272 FLPLAH-----ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326
            LPL H     I+ R         GA V     D  A+ + L     T ++ VP      
Sbjct: 124 SLPLFHVSGLAIVMRS----LLAGGALVLPDKFDAEAIAEALENHGVTHISLVP------ 173

Query: 327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 386
                          +R+ +                  A  L+               LR
Sbjct: 174 ------------TQLQRLLE---------------SLGARWLS--------------SLR 192

Query: 387 LVISGGAPLSTEVEEFLRVTCCAF---LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVS 442
            V+ GGAP+       L          L   YG+TET     T+   D +  +G+ G   
Sbjct: 193 AVLLGGAPIPPS----LLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPL 248

Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQ 502
              ELR+    +           GE+ VRG +LF GY     LT     DGWFHTGD+G 
Sbjct: 249 PGRELRIVNPQD-----------GEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTGDLGY 297

Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           +   G + ++ R+ +LI IS GE +  E +E V    P +E+ ++
Sbjct: 298 LDAEGYLYVLGRRDDLI-ISGGENIYPEEIEAVLLQHPAVEEAAV 341

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  148 bits (377), Expect = 5e-39
 Identities = 101/342 (29%), Positives = 147/342 (42%), Gaps = 66/342 (19%)

Query: 216 PPQPF----NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
           PP       ++  + Y+SGT+G  KGV+LTH      ++ V   +         +DV L 
Sbjct: 150 PPVVVIKQDDVAALPYSSGTTGRSKGVMLTH---RNLIANVAQLVAGEGPNFDREDVTLC 206

Query: 272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331
            LP+ HI                   +G L  +   L+ L  T++  +PR F+       
Sbjct: 207 VLPMFHI-------------------YG-LTVILLALLRLGATVVV-MPR-FD------- 237

Query: 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR-----LR 386
             LE+          A+ KYK+  +          P+   +    VK  +  +     L+
Sbjct: 238 --LEKF-------LAAIEKYKVTHL----------PVVPPIVLALVKHPIVDKYDLSSLK 278

Query: 387 LVISGGAPLSTEVEE-FLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVY 444
            + SG APL  E+ E F        L QGYG+TE+   TT+C   E     G+ G +   
Sbjct: 279 QIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPN 338

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQI 503
            E ++ + PE G   L     GE+ VRG  +  GY  NP+ T E+I  DGW HTGD+G  
Sbjct: 339 VEAKIVD-PETG-ESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYF 396

Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDV 545
             +G + I+DR K LIK   G  VA   LE +    P I D 
Sbjct: 397 DEDGYLFIVDRLKELIKYK-GFQVAPAELEALLLSHPEIADA 437

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  140 bits (356), Expect = 3e-37
 Identities = 86/339 (25%), Positives = 132/339 (38%), Gaps = 88/339 (25%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I YTSGT+G PKG +LTH  +      +          +T  D  L  +PL H+   
Sbjct: 4   PALIQYTSGTTGRPKGAMLTHRNVLNNGYSI-----ARRLGLTEGDRTLVPVPLFHV--- 55

Query: 282 VIEEYF---------FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGI 330
                F            GA++       +       +   + T L GVP +F       
Sbjct: 56  -----FGLVLGVLASLTAGATL-VLMEKFDPGAALRLIERERITALHGVPTMF------- 102

Query: 331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL-ADLLAFRKVKARLGGRLRLVI 389
              +  L       FD      L     G      +P+  +L+  R+++           
Sbjct: 103 ---IALLEHPDFDKFDL---SSLRTGISG-----GAPVPPELV--RRIREEFP------- 142

Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSEL 447
                              A +  GYG+TET G  T    D+      GT G      E+
Sbjct: 143 ------------------MAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEV 184

Query: 448 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPN 506
           ++ + P+ G  P  +   GE+CVRG ++  GYY +P+ T E+I  DGW HTGD+G +  +
Sbjct: 185 KIVD-PDGGEVPPGEV--GEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDED 241

Query: 507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDV 545
           G ++I+ R K++I I  G        EN+Y     IE+ 
Sbjct: 242 GYLRIVGRIKDMI-IRGG--------ENIYPAE--IEEA 269

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  139 bits (353), Expect = 3e-36
 Identities = 120/462 (25%), Positives = 167/462 (36%), Gaps = 141/462 (30%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++  AL A G  PG RV +      ++V    A      + VPL  +   
Sbjct: 13  TYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYPA 72

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                    AE+ +  + D +   L+ P          ++ +TS                
Sbjct: 73  ---------AELAY-ILSDSQPSLLVDP---------ALIIYTS---------------- 97

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                                           GT+G PKGVVLTH  +A   +     ++
Sbjct: 98  --------------------------------GTTGRPKGVVLTHGNLA---ANARALVE 122

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            +  + T  DV L  LPL H+                   HG  NAL          L A
Sbjct: 123 AW--RWTASDVLLHALPLHHV-------------------HGLFNALH-------CPLWA 154

Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN-----MG----YKQREASPL 368
           G    F                L R  FD   +  L  +      MG    Y +     L
Sbjct: 155 GASVEF----------------LPR--FDPQERDALRLLPRITVFMGVPTIYTR-----L 191

Query: 369 ADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVC 427
            +   F    A     LRL +SG A L   V E +   T    L++ YG+TET G     
Sbjct: 192 LEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEERT-GHTLLERYGMTET-GMALSN 249

Query: 428 FPDEMCMVGTAG-PV-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
             D     GT G P+  V  E+R+  V E G  PL     GE+ VRG  +FS Y+  P+ 
Sbjct: 250 PLDGERRPGTVGLPLPGV--EVRI--VDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEA 305

Query: 486 TRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY 526
           T E+   DGWF TGD+G +  +G  +I+ RK + I I  G Y
Sbjct: 306 TAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDI-IKSGGY 346

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  136 bits (346), Expect = 6e-36
 Identities = 97/348 (27%), Positives = 147/348 (42%), Gaps = 96/348 (27%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I+YTSGT+G PKGV+LTH  +          +D     ++  DVYL   PL      
Sbjct: 3   PALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVD-----LSPGDVYLLAAPL------ 51

Query: 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341
                          YH            L P L AG   V           + +  P  
Sbjct: 52  ---------------YHAAGGLF------LLPALAAGGTVVL----------MPKFDP-- 78

Query: 342 RRIFDALYKYKL-------AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
             + D + ++++                     L  L  F +        LRL+I G AP
Sbjct: 79  EAVLDLIERHRVTHTFLVPTMFQR---------LLRLPDFARYD---LSSLRLIIYGAAP 126

Query: 395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRL--- 449
           +  E++  +        VQGYG+TET GPTT     E  +  +G+ G      E+R+   
Sbjct: 127 MPAELKRAMIEWFGPVFVQGYGMTET-GPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDE 185

Query: 450 --EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 505
              E+P  E+G          E+ VRG  + +GY+  P+ T E++ DGW HTGD+G +  
Sbjct: 186 DGRELPPGEVG----------EIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLGYLDE 235

Query: 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI-IEDVSISYSSV 552
           +G + I+DRKK++I IS G        EN+Y   P  +E+V +++ +V
Sbjct: 236 DGYLYIVDRKKDMI-ISGG--------ENIY---PAEVENVLLAHPAV 271

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  129 bits (326), Expect = 1e-32
 Identities = 119/476 (25%), Positives = 177/476 (37%), Gaps = 121/476 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++   L+  G   G RV +Y  N PQ+V A  A      + VP+      
Sbjct: 3   TYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNRE 62

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +  IL+ +                          RV++  + L               
Sbjct: 63  AELEHILNDSG------------------------ARVLIVGSEL--------------- 83

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFL 256
                       +++ ++P          YTSGT+G PKG + TH T +AT  +      
Sbjct: 84  ------------DDVAVIP----------YTSGTTGLPKGCMHTHRTVLATAAASAAWSG 121

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
                 +T D V L+FLPL H+                G     +NA           + 
Sbjct: 122 ------LTPDSVLLAFLPLFHV---------------AGMQGS-MNA----------PIY 149

Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL-AWMNMGYKQREASPLADLLAFR 375
            G   V               R  R     A+ +Y++  W N+       + + DLLA  
Sbjct: 150 TGATLVLLT------------RWDREAAARAIERYRVTHWTNI------VTMVVDLLAHP 191

Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
           +        L++V  GGA L   V E L+        +GYGLTET   T    PD     
Sbjct: 192 RFADYDLSSLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQ 251

Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---- 491
               PV   ++ R+ + PE G   L     GE+ VRG  +F GY+  P+ T ES I    
Sbjct: 252 CLGIPVF-GTDARVID-PETG-EELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDG 308

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
             +F TGD+G I   G    +DR K +I +S G  V    +E +    P + +V +
Sbjct: 309 KRFFRTGDLGYIDEEGYFFFLDRVKRMINVS-GYKVWPAEVEALLYQHPAVLEVCV 363

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  127 bits (322), Expect = 5e-32
 Identities = 103/485 (21%), Positives = 166/485 (34%), Gaps = 125/485 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++++  E   +  AL+A G   G RV + G N  + V  + AC  L      L   L  
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                 L+  ++  +       ++    D  S  R+            +     +T +  
Sbjct: 61  NERTNQLEDLDVQLLLTDSLLEEKDFQAD--SLDRI------------EAAGRYETSLSA 106

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               +                   I T+M+TSGT+G PK V  T         G    L 
Sbjct: 107 SFNMD------------------QIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL- 147

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR---RGASVGYYHGDLNALRDDLMELKPT 314
                 T DD +L  LPL HI    I    FR    GA++       N L + +   + T
Sbjct: 148 ----GFTEDDNWLLSLPLYHISGLSI---LFRWLIEGATL-RIVDKFNQLLEMIANERVT 199

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
            ++ VP                               +L  +                  
Sbjct: 200 HISLVPT------------------------------QLNRL------------------ 211

Query: 375 RKVKARLGG-RLRLVISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVC-FP 429
             +        LR ++ GG+ +   + E      +     +   YG+TETC  + V    
Sbjct: 212 --LDEGGHNENLRKILLGGSAIPAPLIEEAQQYGLP----IYLSYGMTETC--SQVTTAT 263

Query: 430 DEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
            EM       G      E++++   + G+        GE+ V+G  L  GY    +LT  
Sbjct: 264 PEMLHARPDVGRPLAGREIKIKVDNKEGH--------GEIMVKGANLMKGYLYQGELTPA 315

Query: 489 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSIS 548
               GWF+TGDIG++   G + ++ R+ +LI IS G        EN+Y     IE V   
Sbjct: 316 FEQQGWFNTGDIGELDGEGFLYVLGRRDDLI-ISGG--------ENIYPEE--IETVLYQ 364

Query: 549 YSSVS 553
           +  + 
Sbjct: 365 HPGIQ 369

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  128 bits (324), Expect = 9e-32
 Identities = 103/518 (19%), Positives = 176/518 (33%), Gaps = 97/518 (18%)

Query: 41  LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100
           LN A +     ++    +       F           TY ++  EV ++ +AL+  G   
Sbjct: 8   LNLALNALDRHLEADRPDDTAII--FDGEDGLFREL-TYGDLRREVARLANALKDLGGVK 64

Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
           G RV IY  N P+ V A+ A   +  I   +   L   AV   +       +   D    
Sbjct: 65  GDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADD---- 120

Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
                   + +  + +              V        +DE +        E    +P 
Sbjct: 121 -------GTFRNGKEIA-LLEDADAVLSSVVVVPRLGLWYDEAVE----KASEKFEFEPL 168

Query: 221 N---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                  ++YTSGT+G PKG+V +H                 +      D + +      
Sbjct: 169 PADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLT--AKFHGDLLP--GDRFWNSSDPGW 224

Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
           I                G ++   + L            +G   V    ++G      E 
Sbjct: 225 I---------------YGLWYSVFSPL-----------ASGATTVL---YDGRPFYSPE- 254

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASP--LADLLAFRKVKARLGGRLRLVISGGAPL 395
                R+++AL KYK+            SP  L  L+     +      LR++ S G PL
Sbjct: 255 -----RLWEALEKYKVT-------IFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPL 302

Query: 396 STEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 454
           + E  E F       +++  YG TET        P      G++G            +P 
Sbjct: 303 NPEAFEWFYSALGV-WILDIYGQTETGMGFIAGRPP--VKNGSSG------------LPL 347

Query: 455 MGYSP--LDD--PPC----GEVCVRGKT--LFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504
            GY+   +DD   P     GE+ VR     +   Y+ +P+  +E+    W+ TGD  +  
Sbjct: 348 PGYAVRRVDDEGNPVPPGVGELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERD 407

Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
            +G   +  R  ++IK+S G+ +    +E+V    P +
Sbjct: 408 EDGYFWLHGRSDDVIKVS-GKRIGPLEIESVLLAHPAV 444

Length = 528

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  127 bits (320), Expect = 2e-31
 Identities = 123/479 (25%), Positives = 193/479 (40%), Gaps = 92/479 (19%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           TYK+++E V ++ + L      + G R+ I   N  +++  + A   +  I VPL   L 
Sbjct: 29  TYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLT 88

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              + F L  +    +FV+       LS    S   ++ ++  TSL   + E        
Sbjct: 89  ENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY--VQRVISITSLK--EIEDRKIDNFV 144

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
             +                    F IC   YTSGT+G PKG VLT E +  F + ++   
Sbjct: 145 EKNESA----------------SFIIC---YTSGTTGKPKGAVLTQENM--FWNALN--- 180

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
           + F   +T+ D  +  LPL HI                    G +      L    PTL 
Sbjct: 181 NTFAIDLTMHDRSIVLLPLFHI--------------------GGIG-----LFAF-PTLF 214

Query: 317 AG----VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
           AG    VPR FE       KAL  +   +  +   +     A +N            +  
Sbjct: 215 AGGVIIVPRKFEP-----TKALSMIEKHKVTVVMGVPTIHQALIN--------CSKFETT 261

Query: 373 AFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLV-QGYGLTETCGPTTVCFPD 430
             + V        R   +GGAP   E + EF+      FL  QG+G+TET  PT     +
Sbjct: 262 NLQSV--------RWFYNGGAPCPEELMREFIDR---GFLFGQGFGMTET-SPTVFMLSE 309

Query: 431 EMCM--VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
           E     VG+ G   ++ +  L +        + +   GE+ +RG  +   Y+  PD T E
Sbjct: 310 EDARRKVGSIGKPVLFCDYELID-ENKNKVEVGE--VGELLIRGPNVMKEYWNRPDATEE 366

Query: 489 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           +I DGW  TGD+ ++  +G V I+ RKK +I IS GE +    +E V      + +V++
Sbjct: 367 TIQDGWLCTGDLARVDEDGFVYIVGRKKEMI-ISGGENIYPLEVEQVINKLSDVYEVAV 424

Length = 496

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  125 bits (317), Expect = 1e-30
 Identities = 148/552 (26%), Positives = 225/552 (40%), Gaps = 117/552 (21%)

Query: 35  PSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR 94
             +D    T  D++  +V ++        RP +D  FG     TY E+ ++V +  + LR
Sbjct: 25  HDLDYGDTTLVDLYDNAVARFGD------RPALD-FFGATT--TYAELGKQVRRAAAGLR 75

Query: 95  ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT---LGPGAVNFILDH-A 147
           A G  PG RV I   NCPQ + A  A   L  + V   PLY       P       DH A
Sbjct: 76  ALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFE-----DHGA 130

Query: 148 EIDFVF----------VQDKKVKELLSPDCRSA----QRLRVMVCFTSLTAEQKEMAVQT 193
            +  V+           +   ++ ++S +  +A    QRL + +   +L   +  +   T
Sbjct: 131 RVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAAL---T 187

Query: 194 GIKP--YSWDEFLHLGKVNEMEILP---PQPFNICTIMYTSGTSGDPKGVVLTHETI-AT 247
           G  P    W+  +      +   +    P P ++  I+YTSGT+G PKG  LTH  + A 
Sbjct: 188 GPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN 247

Query: 248 FVSG---VDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLN 302
              G   V    D         +  L+ LP+ H   L   +       G  V     D++
Sbjct: 248 AAQGKAWVPGLGDG-------PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDID 300

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
            + D + +  PT L GVP ++EKI    + A E    L                      
Sbjct: 301 LILDAMKKHPPTWLPGVPPLYEKI---AEAAEERGVDLSG-------------------- 337

Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETC 421
                                 +R   SG   L    VE + ++T    LV+GYGLTET 
Sbjct: 338 ----------------------VRNAFSGAMALPVSTVELWEKLTG-GLLVEGYGLTET- 373

Query: 422 GPTTVCFPDEMCMVGT---AGPVSV---YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
            P  V  P     +      G V V    +E+R+ + PE     + D   GE+ VRG  +
Sbjct: 374 SPIIVGNP-----MSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQV 427

Query: 476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
           F GY+  P+ T +S +DGWF TGD+  +  +G ++I+DR K LI I+ G  V    +E V
Sbjct: 428 FKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELI-ITGGFNVYPAEVEEV 486

Query: 536 YCVAPIIEDVSI 547
               P +ED ++
Sbjct: 487 LREHPGVEDAAV 498

Length = 573

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  122 bits (308), Expect = 3e-30
 Identities = 89/342 (26%), Positives = 125/342 (36%), Gaps = 89/342 (26%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I+YTSGT+G PKGV+LTH   A  +    L        +  DDV L+ LPL HI   
Sbjct: 83  TAAILYTSGTTGPPKGVLLTH---AQLLFAARLAARLLG--LRPDDVLLTPLPLFHI--- 134

Query: 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341
                               NA       +   LL G   V           L       
Sbjct: 135 --------------------NAQ---AYSVYAALLVGATLVL----------LPRFSA-- 159

Query: 342 RRIFDALYKYKLAW-------MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
            R +D + K+             +  KQ  +    D              LR V     P
Sbjct: 160 SRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRD------------HPLRFVFGAPLP 207

Query: 395 LSTEVEEFLRVTCCAF---LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-- 449
            +     F       F   LV+GYG+TET  P     P +    G+ G      E+R+  
Sbjct: 208 -AAIWPAFEE----RFGVKLVEGYGMTETGVPIIA--PGDPAPPGSCGRPRPGVEVRIVD 260

Query: 450 ---EEVPEMGYSPLDDPPCGEVCVR---GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
               EVP            GE+ VR      +F GYY  P+ T ++  +GWFHTGD G+ 
Sbjct: 261 EDGREVP-------PGEV-GELVVRPRRPWAMFKGYYGMPEATAKAWRNGWFHTGDRGRR 312

Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDV 545
             +G +  +DRKK+ I+   GE ++   +E      P + + 
Sbjct: 313 DEDGFLYFVDRKKDAIRRR-GENISSYEVEAAILAHPAVAEA 353

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  114 bits (286), Expect = 8e-27
 Identities = 129/490 (26%), Positives = 194/490 (39%), Gaps = 101/490 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++E+ + V  +  AL   G   G RV I   N  ++VE++ A N L  I VP+   L P
Sbjct: 44  TWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTP 103

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + F++       V  +       ++   R    L   V     +++            
Sbjct: 104 PEIAFLVSDCGAHVVVTEA--ALAPVATAVRDIVPLLSTVVVAGGSSD------------ 149

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI-----CTIMYTSGTSGDPKGVVLTHETIAT----- 247
              D  L    +         P +I       IMYTSGT+G PKG VLTH  +       
Sbjct: 150 ---DSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTC 206

Query: 248 -FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 306
              +G D             DV    +PL HI             A +G           
Sbjct: 207 LRTNGAD----------INSDVGFVGVPLFHI-------------AGIG----------- 232

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
               + P LL G P V   I+      L    P   ++ D L   K+  + +   Q +A 
Sbjct: 233 ---SMLPGLLLGAPTV---IY-----PLGAFDP--GQLLDVLEAEKVTGIFLVPAQWQA- 278

Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF----LVQGYGLTETCG 422
               + A ++ + R    LR++  G AP S  +   LR     F    ++  +G TE   
Sbjct: 279 ----VCAEQQARPR-DLALRVLSWGAAPASDTL---LRQMAATFPEAQILAAFGQTEM-S 329

Query: 423 PTTVCF---PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPP--CGEVCVRGKTLFS 477
           P T C     D +  +G+ G V      R+ +   M     D P    GE+  R  TL S
Sbjct: 330 PVT-CMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMN----DVPVGEVGEIVYRAPTLMS 383

Query: 478 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 537
           GY+ NP+ T E+   GWFH+GD+ +    G V ++DRKK++I IS GE +    +ENV  
Sbjct: 384 GYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYCAEVENVLA 442

Query: 538 VAPIIEDVSI 547
             P I +V++
Sbjct: 443 SHPDIVEVAV 452

Length = 542

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  110 bits (276), Expect = 5e-26
 Identities = 114/501 (22%), Positives = 173/501 (34%), Gaps = 127/501 (25%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           TY+E+ E   ++   LRA+ G  PG RV +      + V A+ A        VPL D   
Sbjct: 1   TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPL-DPAY 59

Query: 137 PGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
           P   + FIL+ A    +         L          L   +   +L             
Sbjct: 60  PAERLAFILEDAGARLLLTDSALASRL--AGLVLPVILLDPLELAALDDAPAPPPPDA-- 115

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
                               P  P ++  ++YTSG++G PKGVV+TH ++   ++ +   
Sbjct: 116 --------------------PSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARR 155

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
                  +  DD  L F  L+   D           ASV               E+   L
Sbjct: 156 YG-----LDPDDRVLQFASLSF--D-----------ASV--------------EEIFGAL 183

Query: 316 LAG-----VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LA 369
           LAG      P              +E R     +   + ++ +  +N        +P L 
Sbjct: 184 LAGATLVVPPE-------------DEERDDAALLAALIAEHPVTVLN-------LTPSLL 223

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCF 428
            LLA     A     LRLVI GG  L+   V+ +      A L+  YG TET   T    
Sbjct: 224 ALLAAALPPALAS--LRLVILGGEALTPALVDRWRARGPGARLINLYGPTET---TVWS- 277

Query: 429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---------------GEVCVRGK 473
                   TA  V      R   VP +G  PL +                  GE+ + G 
Sbjct: 278 --------TATLVDPDDAPRESPVP-IGR-PLANTRLYVLDDDLRPVPVGVVGELYIGGP 327

Query: 474 TLFSGYYKNPDLTRESIIDGWF---------HTGDIGQILPNGVVKIIDRKKNLIKISQG 524
            +  GY   P+LT E  +   F          TGD+ + LP+G ++ + R  + +KI  G
Sbjct: 328 GVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIR-G 386

Query: 525 EYVALEYLENVYCVAPIIEDV 545
             + L  +E      P + + 
Sbjct: 387 YRIELGEIEAALLRHPGVREA 407

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  107 bits (270), Expect = 1e-25
 Identities = 88/326 (26%), Positives = 129/326 (39%), Gaps = 81/326 (24%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSGT+G PKGV LTH+ +      +         K+T  D  L+ +PL HI      
Sbjct: 7   ILHTSGTTGRPKGVPLTHKNLLASARNI-----AKSHKLTPSDRCLNVMPLFHI------ 55

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG----VPRVFEKIHEGIKKALEELRPL 340
                        HG + +L         TLLAG     P  F                 
Sbjct: 56  -------------HGLIVSLL-------ATLLAGGSVVCPPKFSA--------------- 80

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASP--LADLLAFRKVKARLG-GRLRLVISGGAPLST 397
             + +D + KY++ W +       A P     LL   K        RLR + S  APL  
Sbjct: 81  -SKFWDDIAKYRVTWYS-------AVPTIHQILLKTAKPNPGKPPPRLRFIRSASAPLPP 132

Query: 398 EV----EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRLEE 451
            V    E+   V     +++ YG+TE         P    +   G+ G  +        E
Sbjct: 133 AVLDRLEKRFGVP----VLEAYGMTEAAHQIA-SNPLPPLVRKPGSVGRPAG------VE 181

Query: 452 VPEMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509
           V  +     PL     GE+ +RG  + +GY  NP+  RE+  DGWF TGD+G +  +G +
Sbjct: 182 VAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTGDLGYLDEDGYL 241

Query: 510 KIIDRKKNLIKISQGEYVALEYLENV 535
            +  R K LI    GE ++   +E V
Sbjct: 242 FLTGRIKELINRG-GEKISPREVEEV 266

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  110 bits (276), Expect = 2e-25
 Identities = 129/507 (25%), Positives = 191/507 (37%), Gaps = 109/507 (21%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++++ + V ++   L A G +PG RVGI+  NC +W+    A   +  I V +      
Sbjct: 47  TWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRA 106

Query: 138 GAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQ----------RLRVMVCF 179
             + + L  + + +V   D          ++ELL P     Q           LR +V  
Sbjct: 107 SELEYALGQSGVRWVICADAFKTSDYHAMLQELL-PGLAEGQPGALACERLPELRGVVSL 165

Query: 180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--------PPQPFNICTIMYTSGT 231
               A               W E    G+    E L           P NI    YTSGT
Sbjct: 166 AP--APPPGFLA--------WHELQARGETVSREALAERQASLDRDDPINI---QYTSGT 212

Query: 232 SGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-F 288
           +G PKG  L+H  I    +     L L +  D++ V       +PL H    V+      
Sbjct: 213 TGFPKGATLSHHNILNNGYFVAESLGLTE-HDRLCVP------VPLYHCFGMVLANLGCM 265

Query: 289 RRGASVGY--YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346
             GA + Y     D  A    + E + T L GVP +F          + EL   +R  FD
Sbjct: 266 TVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF----------IAELDHPQRGNFD 315

Query: 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT 406
                                                 LR  I  GAP   EV    RV 
Sbjct: 316 L-----------------------------------SSLRTGIMAGAPCPIEVMR--RVM 338

Query: 407 C---CAFLVQGYGLTETCGPTTVCFPDEMC--MVGTAGPVSVYSELRLEEVPEMGYSPLD 461
                A +   YG+TET   +      +     V T G    + E+++ + P+    P  
Sbjct: 339 DEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATVPRG 397

Query: 462 DPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
           +   GE+C RG ++  GY+ NP+ T ESI  DGW HTGD+  +   G V+I+ R K++I 
Sbjct: 398 E--IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMI- 454

Query: 521 ISQGEYVALEYLENVYCVAPIIEDVSI 547
           I  GE +    +E      P + DV +
Sbjct: 455 IRGGENIYPREIEEFLFTHPAVADVQV 481

Length = 558

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  107 bits (269), Expect = 1e-24
 Identities = 122/511 (23%), Positives = 197/511 (38%), Gaps = 107/511 (20%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G   +++Y E+ EE  +I++ LRA G +PG  V +       +V A  AC     + VP+
Sbjct: 35  GSEEFQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPV 94

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMA 190
                         + E +    + + + ELL SP   +   L   +      A  + + 
Sbjct: 95  ----AVPPT-----YDEPNAAVAKLRNIWELLGSPVILTDAALVAALAGLRTRAGLEALR 145

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
           V    +  S      L         P +P +   ++ TSG++G PK VVLTH  I     
Sbjct: 146 VLAIEELRSAPPDAPL--------HPARPDDPALLLLTSGSTGVPKCVVLTHRNI----- 192

Query: 251 GVDLFLDQFEDKMTV-----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 305
                L +    + V     DDV L+++PL H+               +   H     LR
Sbjct: 193 -----LARSAGTVQVNGFTPDDVSLNWMPLDHV-------------GGIVMLH-----LR 229

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA--WM-NMGYKQ 362
           D            V    ++IH      L +  PLR    D + +Y++   W  N  +  
Sbjct: 230 D------------VYLGCQQIHVPTDYILAD--PLR--WLDLIDRYRVTITWAPNFAFAL 273

Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTC-----CAFLVQGYG 416
                L D L   + ++     LR +I+ G  +  +    FL +          +   +G
Sbjct: 274 -----LNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFG 328

Query: 417 LTETCGPTTVC--FPDEMCMVGTA-----GPVSVYSELRLEEVP--EMGY---------- 457
           ++ETC   T    F       G       GP+   +    E V   E+G           
Sbjct: 329 MSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIV 388

Query: 458 ----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKII 512
               + L +   G + VRG T+ SGYY+NP+   E+   DGWF TGD+G +  +G + I 
Sbjct: 389 DEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFL-HDGRLTIT 447

Query: 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
            R+K++I I+   Y   E +E      P +E
Sbjct: 448 GREKDMIIINGVNYYNHE-IEAAVEQVPGVE 477

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  102 bits (257), Expect = 4e-23
 Identities = 72/214 (33%), Positives = 103/214 (48%), Gaps = 38/214 (17%)

Query: 343 RIFDALYKYKLAWMNMGYKQREASP-----LADLLAFRKVKARLGGRLRLVISGGAPLST 397
            I+D + K+K+  +         +P     LA+  A    K  L   +R V++ GAP   
Sbjct: 246 AIYDLIEKHKVTHLC-------GAPTVLNMLAN--APEADKLPLPRPVR-VMTAGAPPPP 295

Query: 398 EVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELR------- 448
            V    ++    F +   YGLTET GP TVC    E      A P    + L+       
Sbjct: 296 AV--IKKMEELGFEVTHVYGLTETYGPITVCEWKPEW----DALPAEERARLKARQGVRY 349

Query: 449 --LEEV----PEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
             LEEV    PE     P D    GE+ +RG T+  GYYKNP+ T E+   GWFH+GD+ 
Sbjct: 350 VGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGDLA 409

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
            + P+G ++I DR K++I IS GE ++   +E V
Sbjct: 410 VVHPDGYIEIKDRSKDII-ISGGENISSIEVEGV 442

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 98.6 bits (246), Expect = 8e-22
 Identities = 127/485 (26%), Positives = 192/485 (39%), Gaps = 84/485 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+   V ++   L   G   G  V     N  ++     AC+ +  +  PL      
Sbjct: 57  TYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRE 116

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             ++F+L HAE   V V  K  +         A+RLR            + + V  G   
Sbjct: 117 RELSFMLKHAESK-VLVVPKTFRGFDHA--AMARRLR------PELPALRHVVVVGGDGA 167

Query: 198 YSWDEFLHLGKVNEME-----ILP---PQPFNICTIMYTSGTSGDPKGVVLTHET----I 245
            S++  L +    E E     IL    P P ++  ++YTSGT+G+PKGV+ T  T    I
Sbjct: 168 DSFEALL-ITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANI 226

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 305
             +   + L           DDV L   P+AH                 G+ +G      
Sbjct: 227 VPYAERLGL---------GADDVILMASPMAHQ---------------TGFMYG------ 256

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA 365
              + + P +L G   V + I +   +A E +R              + +  M      +
Sbjct: 257 ---LMM-PVML-GATAVLQDIWD-PARAAELIRTEG-----------VTFT-MA-----S 293

Query: 366 SP-LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT 424
           +P L DL    K   R    LR  +  GAP+   + E  R    A +V  +G+TE    T
Sbjct: 294 TPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVT 353

Query: 425 TVCF--PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
                 PDE     T G      E+R   V +   +PL     G + VRG + F GY K 
Sbjct: 354 LTKLDDPDER-ASTTDGCPLPGVEVR---VVDADGAPLPAGQIGRLQVRGCSNFGGYLKR 409

Query: 483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
           P L      DGWF TGD+ +I  +G ++I  R K++I I  GE + +  +E +    P I
Sbjct: 410 PQLNGTDA-DGWFDTGDLARIDADGYIRISGRSKDVI-IRGGENIPVVEIEALLYRHPAI 467

Query: 543 EDVSI 547
             V+I
Sbjct: 468 AQVAI 472

Length = 547

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 97.8 bits (244), Expect = 1e-21
 Identities = 97/317 (30%), Positives = 123/317 (38%), Gaps = 76/317 (23%)

Query: 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276
           P P     I+YTSGT+G PKGVVL+   IA     +D   + ++   T DDV +  LPL 
Sbjct: 125 PDPDAPALIVYTSGTTGPPKGVVLSRRAIAA---DLDALAEAWQ--WTADDVLVHGLPLF 179

Query: 277 HILDRVIEEY-FFRRGASV---------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326
           H+   V+      R G             Y            +    TL  GVP V+ +I
Sbjct: 180 HVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQA---------LSEGGTLYFGVPTVWSRI 230

Query: 327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 386
                   E  R LR                                     ARL     
Sbjct: 231 AA----DPEAARALRG------------------------------------ARL----- 245

Query: 387 LVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE 446
           LV SG A L   V + L        V+ YG+TET   T     D     G  G      E
Sbjct: 246 LV-SGSAALPVPVFDRLAALTGHRPVERYGMTETL-ITLSTRADGERRPGWVGLPLAGVE 303

Query: 447 LRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 504
            RL  V E G   P D    GE+ VRG TLF GY   PD T  +   DGWF TGD+  + 
Sbjct: 304 TRL--VDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVD 361

Query: 505 PNGVVKIIDRKK-NLIK 520
           P+G+ +I+ R+  +LIK
Sbjct: 362 PDGMHRIVGRESTDLIK 378

Length = 471

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 97.7 bits (243), Expect = 2e-21
 Identities = 101/338 (29%), Positives = 148/338 (43%), Gaps = 67/338 (19%)

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY--LSFLPLA 276
           P ++  + YT GT+G PKG +LTH  + + VS  D++      + T  DV   +  LPL 
Sbjct: 191 PDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVW--GKPSRATRGDVERVICVLPLF 248

Query: 277 HILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
           HI    VI     RRG  +  +   D+ A+  D+ E + T+  GVP ++         AL
Sbjct: 249 HIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMW--------IAL 300

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
                L +R   +L                              A +G       SGGAP
Sbjct: 301 ANDPSLEKRDLSSL------------------------------ATIG-------SGGAP 323

Query: 395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 454
           L  EV  F        L  G+G+TETC P T   P+     G   P S+   L L  + E
Sbjct: 324 LPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPE-----GPDKPGSI--GLMLPGI-E 375

Query: 455 MGYSPLDDP----PCGEVC---VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG 507
           +    LDDP    P GEV    +RG  +  GY+  P+ + E+ +   F TGDIG +  +G
Sbjct: 376 LDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDG 435

Query: 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDV 545
              ++DRKK++I IS G  V  + +E      P +++V
Sbjct: 436 YFFLVDRKKDMI-ISGGFNVYPQMIEQAIYEHPGVQEV 472

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 97.8 bits (244), Expect = 2e-21
 Identities = 92/313 (29%), Positives = 139/313 (44%), Gaps = 54/313 (17%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD--VYLSFL 273
              P ++  + YT GT+G  KG  L H  I   V  ++ +L    +K    D   ++  L
Sbjct: 200 KLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCAL 259

Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
           PL HI    +          +G   G  N            +L   PR        I   
Sbjct: 260 PLYHIFALTV-------CGLLGMRTGGRN------------ILIPNPR-------DIPGF 293

Query: 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
           ++EL+  +  IF A+     A +N        +P  D L F K+    GG       G A
Sbjct: 294 IKELKKYQVHIFPAVNTLYNALLN--------NPDFDKLDFSKLIVANGG-------GMA 338

Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-PV-SVYSELRLE 450
                 E +L +T C  + +GYGL+ET  P   C P D     GT G P+ S    +R +
Sbjct: 339 VQRPVAERWLEMTGCP-ITEGYGLSET-SPVATCNPVDATEFSGTIGLPLPSTEVSIRDD 396

Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 509
           +  ++   PL +P  GE+C+RG  + +GY+  PD T + +  DG+F TGD+G +   G  
Sbjct: 397 DGNDL---PLGEP--GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYT 451

Query: 510 KIIDRKKNLIKIS 522
           KI+DRKK++I +S
Sbjct: 452 KIVDRKKDMILVS 464

Length = 557

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 97.8 bits (243), Expect = 2e-21
 Identities = 131/492 (26%), Positives = 198/492 (40%), Gaps = 79/492 (16%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYD- 133
           T+   +++V +  + L+  G E G RV I   NCPQ V           I V   PLY  
Sbjct: 51  TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110

Query: 134 -----TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS------L 182
                 L       IL    +D VF +   V+     +     R+   + F        +
Sbjct: 111 RELEYQLHDSGAKVILC---LDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFV 167

Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-----LPPQPFN-ICTIMYTSGTSGDPK 236
             +Q  + V+      S  E +HL    E E+     +P  P N +  + YT GT+G PK
Sbjct: 168 QKKQSNLVVKV-----SESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPK 222

Query: 237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY 296
           GV+LTH+ +   VS   + +    +    ++V L  LP  H+                  
Sbjct: 223 GVMLTHKNL---VSNTLMGVQWLYNCKEGEEVVLGVLPFFHV------------------ 261

Query: 297 YHGDLNALRDDLMELKPTLLAGVPRV-FEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355
            +G    +   +M+    +L  +P+   + + E IKK    L P    I+ AL       
Sbjct: 262 -YGMTAVMNLSIMQGYKMVL--IPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLN----- 313

Query: 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGY 415
                     SPL        +K      +R  ISG APL  EV+E         LV+GY
Sbjct: 314 ----------SPL--------LKEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGY 355

Query: 416 GLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
           GLTE+   T   F  E  + G+ G     +E  +  + E G   L     GE+ V+G  +
Sbjct: 356 GLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSL-ETG-EALPPGEIGEIVVKGPQI 413

Query: 476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
             GY+  P+ T   + DGW HTGD+G +  +G   + DRKK++I  S       E  E +
Sbjct: 414 MKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVL 473

Query: 536 YCVAPIIEDVSI 547
           Y    + E V+I
Sbjct: 474 YEHEKVQEVVTI 485

Length = 563

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 96.0 bits (239), Expect = 6e-21
 Identities = 98/329 (29%), Positives = 145/329 (44%), Gaps = 58/329 (17%)

Query: 217 PQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
           PQ  ++  + YT GT+G  KG +LTH   +A  +    L      +     ++ ++ LPL
Sbjct: 204 PQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGC---EILIAPLPL 260

Query: 276 AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE 335
            HI       Y F          G+ N L  +            PR    +       ++
Sbjct: 261 YHI-------YAFTFHCMAMMLIGNHNILISN------------PRDLPAM-------VK 294

Query: 336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 395
           EL   +   F  L    +A  N      EA        FRK+       L+L +SGG  L
Sbjct: 295 ELGKWKFSGFVGLNTLFVALCN-----NEA--------FRKLDF---SALKLTLSGGMAL 338

Query: 396 STEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEV 452
                E +  VT CA   +GYG+TET  P     P +   VGT G PV S   ++  ++ 
Sbjct: 339 QLATAERWKEVTGCAIC-EGYGMTET-SPVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDG 396

Query: 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511
            E+   PL +   GE+CV+G  +  GY++ P+ T E +  DGW  TGDI  I  +G ++I
Sbjct: 397 NEL---PLGEV--GELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRI 451

Query: 512 IDRKKNLIKISQGEYVALEYLENVYCVAP 540
           +DRKK++I +S G  V    LE+V    P
Sbjct: 452 VDRKKDMILVS-GFNVYPNELEDVLAALP 479

Length = 562

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 93.9 bits (234), Expect = 3e-20
 Identities = 67/175 (38%), Positives = 92/175 (52%), Gaps = 21/175 (12%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMV-------- 435
           +R+V+SG APL  E+E+  R     A L QGYG+TE  GP        MC+         
Sbjct: 300 IRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEA-GPVL-----AMCLAFAKEPFPV 353

Query: 436 --GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID 492
             G+ G V   +EL++ + PE G S L     GE+C+RG  +  GY  +P+ T  +I  D
Sbjct: 354 KSGSCGTVVRNAELKIVD-PETGAS-LPRNQPGEICIRGPQIMKGYLNDPEATANTIDKD 411

Query: 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           GW HTGDIG I  +  + I+DR K LIK  +G  VA   LE +    P I D ++
Sbjct: 412 GWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIADAAV 465

Length = 537

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 93.0 bits (231), Expect = 6e-20
 Identities = 105/372 (28%), Positives = 157/372 (42%), Gaps = 84/372 (22%)

Query: 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
            + + L  G+   ++ +P    +I  + YT GT+G  KG +LTH  +   +  V   L Q
Sbjct: 186 PFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245

Query: 259 F-EDKMTV----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
              D   +     +V ++ LPL HI       Y F          G+ N L  +      
Sbjct: 246 LGPDGQPLMKEGQEVMIAPLPLYHI-------YAFTANCMCMMVSGNHNVLITN------ 292

Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM-GYKQREASPLADLL 372
                 PR        I   ++EL   R      L    +A M+  G+K  + S      
Sbjct: 293 ------PR-------DIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFS------ 333

Query: 373 AFRKVKARLGGRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-D 430
                       L+L  SGG  L     E + ++T C  +V+GYGLTET  P     P  
Sbjct: 334 -----------ALKLTNSGGTALVKATAERWEQLTGCT-IVEGYGLTET-SPVASTNPYG 380

Query: 431 EMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPC-------GEVCVRGKTLFSGYYKN 482
           E+  +GT G PV           P      +DD          GE+C++G  +  GY++ 
Sbjct: 381 ELARLGTVGIPV-----------PGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQ 429

Query: 483 PDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
           P+ T E++  +GWF TGDI  I P+G V+I+DRKK+LI +S           NVY     
Sbjct: 430 PEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGF---------NVY--PNE 478

Query: 542 IEDVSISYSSVS 553
           IEDV +++  V+
Sbjct: 479 IEDVVMAHPKVA 490

Length = 562

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 92.1 bits (229), Expect = 1e-19
 Identities = 88/340 (25%), Positives = 136/340 (40%), Gaps = 91/340 (26%)

Query: 225 IMYTSGTSGDPKGVVLTHETI----ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +++TSGT G PKGV+LTH  I      + + ++L         T  DV++   PL H   
Sbjct: 192 VLFTSGTEGLPKGVMLTHNNILASERAYCARLNL---------TWQDVFMMPAPLGH--- 239

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                       + G+ HG           +    L G   V   I       L  L   
Sbjct: 240 ------------ATGFLHG-----------VTAPFLIGARSVLLDIFTP-DACLALLE-- 273

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASP-LADLL-AFRKVKARLGGRLRLVISGGAPLSTE 398
                    + +   M +G     A+P + DLL    K  A L   LR  + GG  +  +
Sbjct: 274 ---------QQRCTCM-LG-----ATPFIYDLLNLLEKQPADLSA-LRFFLCGGTTIPKK 317

Query: 399 VEEFLRVTCC----AFLVQGYGLTETCGPTTVCFPDEMC--MVGTAG------PVSVYSE 446
           V        C      L+  YG TE+  P  V   D+     + T G       + V  E
Sbjct: 318 V-----ARECQQRGIKLLSVYGSTESS-PHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDE 371

Query: 447 LRLEEVPEMGYSPLDDPPC-GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQIL 504
            R + +P         P C GE   RG  +F GY   P+LT  ++  +GW+++GD+ ++ 
Sbjct: 372 AR-KTLP---------PGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMD 421

Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
             G +KI  RKK++I +  GE ++   +E++    P I D
Sbjct: 422 EAGYIKITGRKKDII-VRGGENISSREVEDILLQHPKIHD 460

Length = 547

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 91.9 bits (229), Expect = 1e-19
 Identities = 49/128 (38%), Positives = 62/128 (48%), Gaps = 24/128 (18%)

Query: 415 YGLTETCGPTTVC--------FPDE-----MCMVGTAGP----VSVYSELRLEEVPEMGY 457
           YGLTET GP TVC         P +         G   P    V+V     ++ VP    
Sbjct: 327 YGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPA--- 383

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
              D    GE+  RG  +  GY KNP  T E+   GWFHTGD+  + P+G +KI DR K+
Sbjct: 384 ---DGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKD 440

Query: 518 LIKISQGE 525
           +I IS GE
Sbjct: 441 II-ISGGE 447

Length = 545

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 91.7 bits (228), Expect = 1e-19
 Identities = 120/500 (24%), Positives = 182/500 (36%), Gaps = 89/500 (17%)

Query: 59  RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118
                RP +   FG   W TY E          AL A+G + G RV +   N  ++++  
Sbjct: 32  ERYPDRPLL--VFGGTRW-TYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVF 88

Query: 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC 178
             C  L  I VP+   L    +  IL ++    + V+   +  L + D        V   
Sbjct: 89  LGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVW-- 146

Query: 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP---QPFNICTIMYTSGTSGDP 235
              L      ++V  G   +S      L         P    QP +   I+YTSGT+G  
Sbjct: 147 ---LLDAPASVSVPAG---WSTAPLPPLD-----APAPAAAVQPGDTAAILYTSGTTGPS 195

Query: 236 KGVVLTHETIATFV-----SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 290
           KGV   H   A F      S  DL +         DDV  + LPL H             
Sbjct: 196 KGVCCPH---AQFYWWGRNSAEDLEI-------GADDVLYTTLPLFHT------------ 233

Query: 291 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350
                      NAL          LLAG   V E             R      + A+ +
Sbjct: 234 -----------NALN----AFFQALLAGATYVLEP------------RFSASGFWPAVRR 266

Query: 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 410
           +      + Y       +  LL+    ++    R+R+ +  G P +     F R      
Sbjct: 267 HG---ATVTYLLGAMVSI--LLSQPARESDRAHRVRVALGPGVP-AALHAAF-RERFGVD 319

Query: 411 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV 470
           L+ GYG TET     V    +    G+ G ++   E R+  V E     L D   GE+ +
Sbjct: 320 LLDGYGSTETNFVIAVTHGSQ--RPGSMGRLAPGFEARV--VDEHD-QELPDGEPGELLL 374

Query: 471 RGKTLF---SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 527
           R    F   +GY+  P+ T E+  + WFHTGD      +G  + +DR K+ I+  +GE +
Sbjct: 375 RADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIR-RRGENI 433

Query: 528 ALEYLENVYCVAPIIEDVSI 547
           +   +E V    P +   ++
Sbjct: 434 SSFEVEQVLLSHPAVAAAAV 453

Length = 542

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 90.0 bits (224), Expect = 5e-19
 Identities = 65/242 (26%), Positives = 93/242 (38%), Gaps = 35/242 (14%)

Query: 42  NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101
            T  DI   S ++YP    L         FG   W TY E+   V ++ +AL   G + G
Sbjct: 11  QTIGDILRRSARRYPDKTAL--------VFGDRSW-TYAELDAAVNRVAAALLDLGLKKG 61

Query: 102 CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE 161
            RV   G N   +     AC     + VP+   L    + +ILDH+      V       
Sbjct: 62  DRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPA---- 117

Query: 162 LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF- 220
            L+P   +A  L  +            + +     P  W +F    +   +    P    
Sbjct: 118 -LAPTAEAALALLPVDTLIL------SLVLGGREAPGGWLDFADWAEAGSVA--EPDVEL 168

Query: 221 ---NICTIMYTSGTSGDPKGVVLTHET-IATFVSG-VDLFLDQFEDKMTVDDVYLSFLPL 275
              ++  I+YTSGT   PKG +LTH   IA +VS  V          M+ DD+ L  LPL
Sbjct: 169 ADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-------DMSADDIPLHALPL 221

Query: 276 AH 277
            H
Sbjct: 222 YH 223

Length = 523

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 88.1 bits (219), Expect = 6e-19
 Identities = 76/314 (24%), Positives = 120/314 (38%), Gaps = 73/314 (23%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--- 278
           +    +T GT+G PK    +H           L        +   DV L+ LPL H+   
Sbjct: 4   LAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSG-----LGPGDVLLNGLPLFHVGGA 58

Query: 279 LDRVIEEYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHE 328
           +   +      RGA+V      G+ +    A+  +  ++    + TLL+ VP V      
Sbjct: 59  IVTGLAP--LARGATVVLPTPSGFRN---PAVVANFWKIVERYRVTLLSAVPTV------ 107

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
                                                  LA LL      A +   LR  
Sbjct: 108 ---------------------------------------LAALLQVPLGDADIS-SLRYA 127

Query: 389 ISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL 447
           ++G APL  EV   F  VT    +V+GYG+TE  G + +         G+ G    Y+ +
Sbjct: 128 LTGAAPLPVEVARRFEAVTGVP-VVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRV 186

Query: 448 RLEEVPEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 505
           R+ ++   G    D  P   G + +RG  +F GY  +       + DGW +TGD+G+I  
Sbjct: 187 RVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLEDGWLNTGDLGRIDA 246

Query: 506 NGVVKIIDRKKNLI 519
           +G + +  R K+LI
Sbjct: 247 DGYLWLTGRAKDLI 260

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 88.9 bits (220), Expect = 1e-18
 Identities = 93/455 (20%), Positives = 152/455 (33%), Gaps = 95/455 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++   L + G  PG  V I      + V A+ A        VPL      
Sbjct: 254 TYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPA 313

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ +    +  Q       L  D      L                A+   +  
Sbjct: 314 ERLAYILEDSRPTLLLTQ-----AHLRVDDVGLPGL----------------ALDDALSE 352

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               + +    + +          +  I+YTSG++G PKGV + H  +A  ++       
Sbjct: 353 IPDTDPIPQALLGD---------ALAYIIYTSGSTGQPKGVRIEHRALANLLNDAG---A 400

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR--GASV----GYYHGDLNALRDDLMEL 311
           +F   +  DD  L+   L+   D  + E F     GA +         D  AL + L   
Sbjct: 401 RFG--LDADDRVLALASLS--FDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQ 456

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
             T+L  VP                                   + +         L   
Sbjct: 457 GITVLLLVP---------------------------------LLLRL---------LLLA 474

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLTETCGPTTVCFP 429
                + +    RLR ++SGG  L   + + L         L+  YG TE     T+  P
Sbjct: 475 ALAPDLISPCE-RLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEA----TLDAP 529

Query: 430 DEMCMVGTAGPVSVYSELRLEEVPEM--GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
                      V +   +   ++  +  G  PL     GE+ + G  L  GY   PDLT 
Sbjct: 530 SFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTA 589

Query: 488 ES-IIDGWFHTGDIGQILPNGVVKIIDRKKNLIKI 521
           E  I    + TGD+ + L +G ++ + RK + +KI
Sbjct: 590 ERFIALRLYRTGDLARPLADGALEYLGRKDSQVKI 624

Length = 642

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 87.7 bits (218), Expect = 2e-18
 Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 17/203 (8%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E Y+   ++ SAL   G   G  V +   N P  +EA         + VPL   L  
Sbjct: 31  TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ---RLRVMVCFTSLTAEQKEMAVQTG 194
             + FIL+H+E   +FV D++   L             +   +   S  AE  E      
Sbjct: 91  DDIAFILNHSEAKVLFV-DQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEE----- 144

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
                +++ L  G  + + I P   ++  ++ YTSGT+G+PKGVV TH     +++ +  
Sbjct: 145 ---GDYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHR--GAYLNALGN 199

Query: 255 FLDQFEDKMTVDDVYLSFLPLAH 277
            +   E  M    VYL  LP+ H
Sbjct: 200 VI---EWGMPDRPVYLWTLPMFH 219

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 87.6 bits (218), Expect = 2e-18
 Identities = 77/336 (22%), Positives = 133/336 (39%), Gaps = 71/336 (21%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSG++G PKGV ++H  +A+F+  +    D     +T  DV+ +  P          
Sbjct: 102 ILFTSGSTGKPKGVQISHANLASFLDWMVEDFD-----LTEGDVFSNQAPF--------- 147

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 339
             F            DL+     + +L P L +G     +P+      E I   L     
Sbjct: 148 -SF------------DLS-----VFDLFPALASGATLYVIPK------EQIADPLA---- 179

Query: 340 LRRRIFDALYKYKLA-WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
               +F+ L ++ L  W+++       S  + LL  R++       LR  +  G  L  +
Sbjct: 180 ----LFEFLKEHGLTVWVSV------PSFASLLLLSRELNPESLPSLRTFLFCGEVLPKK 229

Query: 399 -VEEFLRVTCCAFLVQGYGLTETCGPTT-VCFPDEMCMVGTAGPV---SVYSELRLEEVP 453
             +   R    A ++  YG TE     T      E   +    P+        LR   + 
Sbjct: 230 LAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEP--LSRNEPLPIGYPKPGLRALILD 287

Query: 454 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTGDIGQILPNGVV 509
           E G  P+     GE+ + G  +  GY  NP+ T ++        W+ TGD+  +  +G++
Sbjct: 288 EDG-RPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLL 346

Query: 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDV 545
             + RK   IK+  G  + LE +E      P +E+ 
Sbjct: 347 VYLGRKDFQIKL-HGYRIELEEIEAALRALPGVEEA 381

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 88.0 bits (218), Expect = 2e-18
 Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 22/173 (12%)

Query: 390 SGGAP----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF---------PDEMCMVG 436
           +G AP    L    E+  RVT        YGL+ET GP+TVC          P+E   + 
Sbjct: 318 AGAAPPPSVLFAMSEKGFRVT------HTYGLSETYGPSTVCAWKPEWDSLPPEEQARLN 371

Query: 437 TAGPVSVYSELRLEEV--PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 494
               V       L+ V    M   P D    GE+ +RG  +  GY KNP    E+  +GW
Sbjct: 372 ARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGW 431

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           FH+GD+G   P+G ++I DR K++I IS GE ++   +ENV    P + + S+
Sbjct: 432 FHSGDLGVKHPDGYIEIKDRSKDII-ISGGENISSLEVENVVYTHPAVLEASV 483

Length = 567

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 87.8 bits (218), Expect = 2e-18
 Identities = 106/457 (23%), Positives = 171/457 (37%), Gaps = 76/457 (16%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ EEV +  +ALR  G E   RV +   + P++  A      +  + VP+   L P
Sbjct: 32  TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               + L+ +    + +  +++ E+L P  +    LR ++            A       
Sbjct: 92  DDYRYYLNDSRARVLVI-SEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYA------- 143

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               + +      E+E       ++   +Y+SG++G PKGVV  H  +       + +  
Sbjct: 144 ----QLIA-TAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTA---EAYAK 195

Query: 258 QFEDKMTVDDVYLSF--LPLAHILDRVIEEYF-FRRGASVGYYHGDLNALR--DDLMELK 312
                +T DDV  S   L  A+ L   +  YF    GA+                +   K
Sbjct: 196 NVL-GITEDDVVFSAAKLFFAYGLGNGL--YFPLSVGATTVLMPERPTPDAVFATIERYK 252

Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
           PT+  GVP                           LY                   A +L
Sbjct: 253 PTVFFGVP--------------------------TLY-------------------AAML 267

Query: 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432
           A  +   R    LRL +S G  L  E+    +      ++ G G TE         P   
Sbjct: 268 AAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGA- 326

Query: 433 CMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII 491
              GT+G PV  Y E++L  V E G   + D   GE+ VRG +  +GY+   + TRE+ +
Sbjct: 327 VKYGTSGKPVPGY-EVKL--VDEDG-EEVADGEIGELWVRGDSSAAGYWNRREKTRETFV 382

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
             W  TGD      +G      R  +++K+S G +V+
Sbjct: 383 GEWTRTGDKYYRDEDGYYWYCGRSDDMLKVS-GIWVS 418

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 86.9 bits (215), Expect = 5e-18
 Identities = 94/353 (26%), Positives = 147/353 (41%), Gaps = 61/353 (17%)

Query: 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED 261
           E L LG+ + M  L  +P +I  + YT GT+G  KG +LTH  +   +     +L     
Sbjct: 190 EALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGK 249

Query: 262 KMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPR 321
                +V ++ LPL HI         F +        G  N L  +            PR
Sbjct: 250 LEEGCEVVITALPLYHIFALTANGLVFMK-------IGGCNHLISN------------PR 290

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
                   +   ++EL+  R   F  +        N  +     +P  D + F  +K  L
Sbjct: 291 -------DMPGFVKELKKTRFTAFTGV--------NTLFNGLLNTPGFDQIDFSSLKMTL 335

Query: 382 GGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV 441
           GG       G A   +  E + +VT    LV+ YGLTET  P     P  + +    G +
Sbjct: 336 GG-------GMAVQRSVAERWKQVTGLT-LVEAYGLTET-SPAACINP--LTLKEYNGSI 384

Query: 442 SVYSELRLEEVPEMGYSPLDDP-------PCGEVCVRGKTLFSGYYKNPDLTRESI-IDG 493
            +        +P       DD          GE+C++G  +  GY+K P+ T + +  DG
Sbjct: 385 GL-------PIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADG 437

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVS 546
           W HTGDI ++   G V I+DRKK++I +S G  V    +E+V  + P + +V+
Sbjct: 438 WLHTGDIARMDEQGFVYIVDRKKDMILVS-GFNVYPNEIEDVIAMMPGVLEVA 489

Length = 560

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 86.1 bits (214), Expect = 8e-18
 Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 26/176 (14%)

Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTA 438
            LR++  GGAPLS E+   +       L Q +G+ E  G   V +     P ++ M  T 
Sbjct: 256 SLRVIQVGGAPLSPELARRVEERLGCPLQQVFGMAE--G--LVNYTRLDDPPDVIM-RTQ 310

Query: 439 G-PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 491
           G P+S   E+R+     E VP            GE+  RG     GYY+ P+    +   
Sbjct: 311 GRPISPADEIRIVDDQGEPVPPGEV--------GELLTRGPYTIRGYYRAPEHNARAFTD 362

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           DG++ TGD+ +I  +G  +++ R K+ I    GE ++ E +EN+    P + D ++
Sbjct: 363 DGFYRTGDLVRIDADGYYRVVGRIKDQI-NRGGEKISPEEIENLLLSHPAVADAAV 417

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 85.9 bits (213), Expect = 1e-17
 Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 11/143 (7%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-P 440
            L+L + GG  +   V E ++++T   +L++GYGLTE C P     P D     G+ G P
Sbjct: 326 SLKLSVGGGMAVQQAVAERWVKLTGQ-YLLEGYGLTE-CSPLVSVNPYDLDYYSGSIGLP 383

Query: 441 V-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGD 499
           V S   +L  ++  E+   P  +P  GE+ V+G  +  GY++ P+ T E I DGW  TGD
Sbjct: 384 VPSTEIKLVDDDGNEV---PPGEP--GELWVKGPQVMLGYWQRPEATDEVIKDGWLATGD 438

Query: 500 IGQILPNGVVKIIDRKKNLIKIS 522
           I  +   G ++I+DRKK++I +S
Sbjct: 439 IAVMDEEGFLRIVDRKKDMILVS 461

Length = 560

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 117/532 (21%), Positives = 174/532 (32%), Gaps = 158/532 (29%)

Query: 57  GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116
           GNR      FVDG                VL + + L   G   G  V I   N   ++E
Sbjct: 29  GNRRRTGHEFVDG----------------VLSLAAGLLRLGLRNGDVVAIAALNSDLYLE 72

Query: 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF--------VFVQDKKVK----ELLS 164
            + A      I  PL         N+     E           + V D+       EL +
Sbjct: 73  WLLAVACAGGIVAPL---------NYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQN 123

Query: 165 PDCRSAQRLRVMVCFTS-------LTAEQKEMAVQTGIKP----YSWDEFLHLGKVNEME 213
               S    +V +   S        +    EM  Q  +      Y+W             
Sbjct: 124 DRLPSL-MWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELDYAW------------- 169

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-----DDV 268
                P +   I +TSGT+G PKGV ++H  +            Q   K+ +     DDV
Sbjct: 170 ----APDDAVLICFTSGTTGRPKGVTISHSALIV----------QSLAKIAIVGYGEDDV 215

Query: 269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
           YL   PL HI                    G L++    LM        G   V      
Sbjct: 216 YLHTAPLCHI--------------------GGLSSALAMLM-------VGACHVL----- 243

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL-------ADLLAF-RKVKAR 380
            + K            FDA    K A   +  KQ   + +       ADL++  RK    
Sbjct: 244 -LPK------------FDA----KAALQAI--KQHNVTSMITVPAMMADLISLTRKSMTW 284

Query: 381 LGGR-LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438
                +R +++GG  LS+  + +  ++   A L   YG+TE C   T     +  +    
Sbjct: 285 KVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPK 344

Query: 439 GPVSVYSELRLEEVP--------------EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
             +   ++ +   V               E+     +    G +  RG  +  GY+    
Sbjct: 345 QTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNS 404

Query: 485 LTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
            T   +  DGW  TGDIG I   G + +I R  + IK + GE V  E +E V
Sbjct: 405 ETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIK-TGGENVYPEEVEAV 455

Length = 563

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 84.2 bits (209), Expect = 3e-17
 Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 16/141 (11%)

Query: 411 LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---- 465
           + Q YG+TET     T+   D +  +G+AG      EL++E+         D        
Sbjct: 281 VYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK---------DGVVVPPFE 331

Query: 466 -GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
            GE+ V+G  +  GY    D TRE+  DGWF TGDIG +   G + ++DR+ +LI IS G
Sbjct: 332 EGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLI-ISGG 390

Query: 525 EYVALEYLENVYCVAPIIEDV 545
           E +    +E V    P + + 
Sbjct: 391 ENIYPAEIEEVLLSHPGVAEA 411

Length = 483

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 83.0 bits (206), Expect = 6e-17
 Identities = 50/152 (32%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
            LRLV++G   L     E         +++GYG TE     +V  P      GT G    
Sbjct: 260 SLRLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVNTPMGNK-PGTVGRPLP 318

Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--DGWFHTGDIG 501
             E+R+       +  L     G + VRG  + SGY  N + T E  +  DGW+ TGDIG
Sbjct: 319 GIEVRIVSPE--THEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIG 376

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
           +I  +G + I+ R K   KI  GE V+L  +E
Sbjct: 377 KIDEDGFLTIVGRLKRFAKIG-GEMVSLTAVE 407

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 83.1 bits (206), Expect = 6e-17
 Identities = 88/345 (25%), Positives = 137/345 (39%), Gaps = 111/345 (32%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I ++SG++G+PKGV+LTH+ + T +  +         ++T +DV+LS++PL H       
Sbjct: 111 IQFSSGSTGEPKGVILTHKNLLTNIEAIIEAA-----EITSEDVFLSWMPLTH------- 158

Query: 285 EYFFRRGASVGYYHGDLNALRDDLME-LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343
                    +G     L      + + L PT      R+F +            RPL   
Sbjct: 159 --------DMGLIGFHLTPTALGINQYLMPT------RLFIR------------RPL--L 190

Query: 344 IFDALYKYKLAWM---NMGYKQ------REASPLADLLAFRKVKARLGGRLRLVISGGAP 394
             D   +++   +   N GYK        E     DL + R           L+ +G  P
Sbjct: 191 WLDKASQHRATILSSPNFGYKYLLKHFKTEKIIDWDLSSVR-----------LIFNGAEP 239

Query: 395 LSTEV-EEF--------LRVTCCAFLVQGYGLTETCGPTTVCFP---------------- 429
           +S ++ EEF        LR      +   YGL E      V FP                
Sbjct: 240 ISADLCEEFLEKMAPFGLRPNA---MYPVYGLAEAT--LAVSFPKPGEPFKTVCLDRNHL 294

Query: 430 --------------DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
                         D +  V    P+    E+R+  V + G   L D   G + ++G  +
Sbjct: 295 KVGVKIIEIDPKNSDAISFVEVGSPID-GCEIRI--VDDAGEV-LPDRTIGHIQIKGDNV 350

Query: 476 FSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLI 519
            SGYY NP+ T++SI  DGW  TGD+G +  NG + I  R K++I
Sbjct: 351 TSGYYNNPEATKKSITPDGWLKTGDLGFLR-NGRLVITGRAKDII 394

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 83.0 bits (205), Expect = 7e-17
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 6/167 (3%)

Query: 383 GRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETC-GPTTVCFPDEMCMVGTAGP 440
             L   I GG     + + +F RV   A  +  YGLTETC G T +    E+  +G+ G 
Sbjct: 264 DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGR 323

Query: 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 500
              + E+R+ +     + P +    GE+C+RG  +  GY+K+P+ T E+    WF +GD+
Sbjct: 324 ALAHVEIRIAD-GAGRWLPPNMK--GEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDV 380

Query: 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           G +   G + + DRKK++I IS GE +A   +E V    P + + ++
Sbjct: 381 GYLDEEGFLYLTDRKKDMI-ISGGENIASSEVERVIYELPEVAEAAV 426

Length = 497

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 82.4 bits (204), Expect = 1e-16
 Identities = 83/319 (26%), Positives = 115/319 (36%), Gaps = 77/319 (24%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLS----FL- 273
           I   +YTSGT+G PKGV+  H    TF        + F  +   +   D   S    F  
Sbjct: 93  IAYWLYTSGTTGKPKGVMHRHRDPLTFA-------EAFARELLGLQPGDRIFSSSKLFFA 145

Query: 274 -PLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             L + L       F    GAS     G     A+ D L   +PT+L GVP ++      
Sbjct: 146 YGLGNSL------LFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALY------ 193

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
                                                    LL      A L   +RL +
Sbjct: 194 ---------------------------------------RALLESGAGSAPLFRSVRLCV 214

Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELR 448
           S G  L   + E         ++ G G TE         P      GT G PV  Y E R
Sbjct: 215 SAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAA-RPGTTGRPVPGY-EAR 272

Query: 449 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV 508
           L  V E G         G++ VRG +L  GY+  P+ T+ ++ DGW  TGD      +G 
Sbjct: 273 L--VDESGREVPAGTV-GDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRTGDRFSRDADGW 329

Query: 509 VKIIDRKKNLIKISQGEYV 527
            +   R  ++IK+S G++V
Sbjct: 330 YRYQGRADDMIKVS-GQWV 347

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 82.5 bits (204), Expect = 1e-16
 Identities = 126/526 (23%), Positives = 191/526 (36%), Gaps = 171/526 (32%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           GP V  TY ++++  L++  AL   G + G RV     N  + +EA      +  IC  +
Sbjct: 35  GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTV 94

Query: 132 YDTLGPGAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVM---------- 176
              L P  + +I++HAE      D  FV    + E ++    S +R  V+          
Sbjct: 95  NPRLFPEQIAWIINHAEDRVVITDLTFV---PILEKIADKLPSVERYVVLTDAAHMPQTT 151

Query: 177 ----VCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTS 232
               V +    AE            ++W  F                     + YTSGT+
Sbjct: 152 LKNAVAYEEWIAEAD--------GDFAWKTF--------------DENTAAGMCYTSGTT 189

Query: 233 GDPKGVVLTHET---IATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------- 278
           GDPKGV+ +H +    A   +  D          +  D  L  +PL H            
Sbjct: 190 GDPKGVLYSHRSNVLHALMANNGDAL------GTSAADTMLPVVPLFHANSWGIAFSAPS 243

Query: 279 -----------LDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL-KPTLLAGVPRVFEKI 326
                      LD          GASV  Y         +L++  K T  AGVP V+  +
Sbjct: 244 MGTKLVMPGAKLD----------GASV--Y---------ELLDTEKVTFTAGVPTVWLML 282

Query: 327 HEGIKKALEELRPLR----------RRIFDALYKYKL----AW-MNMGYKQREASPLADL 371
            + ++K   +L  L+          R +  A     +    AW M       E SPL  L
Sbjct: 283 LQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHAWGMT------EMSPLGTL 336

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
            A +   ++L G  RL +                       QGY       P  V    E
Sbjct: 337 AALKPPFSKLPGDARLDV--------------------LQKQGYP------PFGV----E 366

Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII 491
           M +   AG          +E+P       D    G + VRG  + + YY+        I+
Sbjct: 367 MKITDDAG----------KELPW------DGKTFGRLKVRGPAVAAAYYRVDG----EIL 406

Query: 492 D--GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
           D  G+F TGD+  I   G ++I DR K++IK S GE+++   LEN+
Sbjct: 407 DDDGFFDTGDVATIDAYGYMRITDRSKDVIK-SGGEWISSIDLENL 451

Length = 542

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 81.5 bits (202), Expect = 3e-16
 Identities = 83/312 (26%), Positives = 114/312 (36%), Gaps = 81/312 (25%)

Query: 228 TSGTSGDPKGVVLTH--ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR-VIE 284
           T GT+G PK    TH  E    ++  + L L          D     LPL H+    V  
Sbjct: 221 TGGTTGMPKLAQHTHGNEVANAWLGALLLGLGP-------GDTVFCGLPLFHVNALLVTG 273

Query: 285 EYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKAL 334
                RGA V      GY       +  +  ++    +   L+GVP V            
Sbjct: 274 LAPLARGAHVVLATPQGYRG---PGVIANFWKIVERYRINFLSGVPTV------------ 318

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
                                             A LL    V       LR  + G AP
Sbjct: 319 ---------------------------------YAALLQ-VPVDGHDISSLRYALCGAAP 344

Query: 395 LSTEV-EEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
           L  EV   F   T    +V+GYGLTE TC  ++V  PD    +G+ G    Y  +R+  +
Sbjct: 345 LPVEVFRRFEAATGVR-IVEGYGLTEATCV-SSVNPPDGERRIGSVGLRLPYQRVRVVIL 402

Query: 453 PEMGYSPLDDPP--CGEVCVRGKTLFSGYY---KNPDLTRESIIDGWFHTGDIGQILPNG 507
            + G    D      G +C+ G  +FSGY     N  L  E   DGW +TGD+G+I  +G
Sbjct: 403 DDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLE---DGWLNTGDLGRIDADG 459

Query: 508 VVKIIDRKKNLI 519
              +  R K+LI
Sbjct: 460 YFWLTGRAKDLI 471

Length = 632

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 80.3 bits (199), Expect = 4e-16
 Identities = 76/325 (23%), Positives = 113/325 (34%), Gaps = 91/325 (28%)

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
            P +   ++YTSG++G PKGVV+TH  I  F+                 D  L F  +A 
Sbjct: 97  SPDDPAYVIYTSGSTGKPKGVVITHRNICNFL---RAEGAILGI--RPGDRVLQFASIA- 150

Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG---VPRVFEKIHEGIKKAL 334
             D  I E F                          TLLAG   V    E   E + + L
Sbjct: 151 -FDVSILEIFT-------------------------TLLAGGTLVIPPEELRLEDLAEFL 184

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LADLLAFRKVKARLGGRLRLVISGGA 393
             LR                  ++       +P L  LL    V       LR +I GG 
Sbjct: 185 NRLRV--------------TVAHL-------TPSLLALLDPEDVP-----SLRTLILGGE 218

Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETC--GPTTVCFPDEMCMVGTAGPVSVYSELRLEE 451
                + +         L+  YG TE       +   P +   +G   P+  Y+   L  
Sbjct: 219 ACPQALVDRWSKPRR--LLNTYGPTEATVTATASRLTPGKPVNIG--RPLPNYTCWVL-- 272

Query: 452 VPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------DGW----FH 496
                  P  +P       GE+C+ G  +  GY   P+LT E  I      +      + 
Sbjct: 273 ------DPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYR 326

Query: 497 TGDIGQILPNGVVKIIDRKKNLIKI 521
           TGD+ + L +G ++ + RK + +KI
Sbjct: 327 TGDLVRYLEDGSLEFLGRKDDQVKI 351

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 80.1 bits (198), Expect = 4e-16
 Identities = 79/319 (24%), Positives = 116/319 (36%), Gaps = 83/319 (26%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDD------VYLSFL 273
              + +TSGT+G PK V+ TH      +     +LD   D +  T+ D       + S  
Sbjct: 83  PALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWSSLF 142

Query: 274 -PLAHILDRVIEEYFFRRGASVGYYHGD-LNALR--DDLMELKPTLLAGVPRVFEKIHEG 329
            P                GA+V  YHG   +A R  + L     T     P  +      
Sbjct: 143 APWLL-------------GAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAY------ 183

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
                   R L ++                          DL ++          LR V+
Sbjct: 184 --------RMLLQQ--------------------------DLSSYDF------SHLRHVV 203

Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELR 448
           S G PL+ EV ++ R      +  GYG TET G     FP      G+ G P   Y   R
Sbjct: 204 SAGEPLNPEVIDWWRAATGLPIRDGYGQTET-GLLVANFPGMEVKPGSMGRPAPGY---R 259

Query: 449 LEEVPEMG-YSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
           +  + + G   P  +   G++ VR K     LF GY K+P+ T  +I   W+ TGD    
Sbjct: 260 VAIIDDEGNELPPGEE--GDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLTGDRAIK 317

Query: 504 LPNGVVKIIDRKKNLIKIS 522
             +G    + R  ++IK S
Sbjct: 318 DEDGYFWFVGRADDVIKSS 336

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 80.2 bits (199), Expect = 5e-16
 Identities = 77/330 (23%), Positives = 118/330 (35%), Gaps = 91/330 (27%)

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
            P ++  ++YTSG++G PKGV++ H  +   ++      +++   +T  D  L F   + 
Sbjct: 91  DPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAW---LQERYG--LTAGDRVLQFASFSF 145

Query: 278 ILDRVIEEYF--FRRGASVGYY------HGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             D  + E F     GA++           D  AL + L E + T+L  VP +   +   
Sbjct: 146 --DASVWEIFPPLLSGATL--VLAPPEVLRDPEALAELLREHRITVLHLVPSLLRAL--- 198

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
               L+ L P                                             LRLVI
Sbjct: 199 ----LDALEPAALP----------------------------------------SLRLVI 214

Query: 390 SGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVC------FPDEMCMVGTAGP-V 441
            GG  L  E V  +  +   A LV  YG TET    T               +G      
Sbjct: 215 VGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANT 274

Query: 442 SVY--SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--- 496
            VY   E  L  VP            GE+ + G  +  GY   P+LT E  +   F    
Sbjct: 275 RVYVLDE-DLRPVPVGV--------PGELYIGGAGVARGYLNRPELTAERFVPDPFGGPG 325

Query: 497 -----TGDIGQILPNGVVKIIDRKKNLIKI 521
                TGD+ + LP+G ++ + R  + +KI
Sbjct: 326 ERLYRTGDLARWLPDGNLEFLGRADDQVKI 355

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 80.8 bits (199), Expect = 5e-16
 Identities = 56/170 (32%), Positives = 80/170 (47%), Gaps = 35/170 (20%)

Query: 388 VISGGAP----LSTEVEEFLRVTCCAFLV-QGYGLTETCGPTTVC--------FPDEMCM 434
           V++GG+P    L  +V+         F V   YGLTE  GP   C         P+   M
Sbjct: 305 VLTGGSPPPAALVKKVQRL------GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358

Query: 435 ---------VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
                    +     V V ++   E VP       D    GE+ ++G ++  GY KNP  
Sbjct: 359 ELKARQGVSILGLADVDVKNKETQESVPR------DGKTMGEIVIKGSSIMKGYLKNPKA 412

Query: 486 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
           T E+   GW +TGD+G I P+G V+I DR K++I IS GE ++   +ENV
Sbjct: 413 TSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDII-ISGGENISSVEVENV 461

Length = 579

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 80.1 bits (198), Expect = 7e-16
 Identities = 55/177 (31%), Positives = 76/177 (42%), Gaps = 25/177 (14%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-------DEMCMVGT 437
           LR VI  GAP+    ++         LVQ +GL E  G  TV  P            +GT
Sbjct: 282 LRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGT 341

Query: 438 AGPVSVYSELRLEEVPEMGYSPLDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESI 490
            G           E   M     DD     PP   GE+CV G  +F+GYY NP+   ++ 
Sbjct: 342 CG----------FERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF 391

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
            DGWF TGD+G +   G + I  R  ++  IS G  V    +E      P + +V++
Sbjct: 392 RDGWFRTGDLGHLDARGFLYITGRASDMY-ISGGSNVYPREIEEKLLTHPAVSEVAV 447

Length = 528

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 79.8 bits (197), Expect = 7e-16
 Identities = 121/493 (24%), Positives = 184/493 (37%), Gaps = 97/493 (19%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY  + E VL + S LR  G   G RV IY     + V AM        + VP+   L  
Sbjct: 27  TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             V  IL    +  + V   +  +LL P       LR ++         +      G +P
Sbjct: 87  EQVAHILADCNVR-LLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHP---GEEP 142

Query: 198 YSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
            SW + L LG        PP P    ++  I+YTSG++G PKGVVL+H  +      V  
Sbjct: 143 ASWPKLLALGDA-----DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVAT 197

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
           +L+        DD  L+ LPL+        +Y F +  +  +Y G    L D L+     
Sbjct: 198 YLE-----NRPDDRLLAVLPLSF-------DYGFNQ-LTTAFYVGATVVLHDYLL----- 239

Query: 315 LLAGVPR-VFEKI-HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
                PR V + +   GI   L  + PL  ++       +L W           P +   
Sbjct: 240 -----PRDVLKALEKHGI-TGLAAVPPLWAQLA------QLDW-----------PESAAP 276

Query: 373 AFRKVKARLGGRL-RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           + R +    GG + R  +S           FL           YGLTE    T +  P+E
Sbjct: 277 SLRYL-TNSGGAMPRATLSRLRSFLPNARLFLM----------YGLTEAFRSTYLP-PEE 324

Query: 432 M----CMVGTAGP---VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           +      +G A P   V V  E   E  P            GE+  RG  +  GY+ +P+
Sbjct: 325 VDRRPDSIGKAIPNAEVLVLREDGSECAPG---------EEGELVHRGALVAMGYWNDPE 375

Query: 485 LTRE------------SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL 532
            T E             + +    +GD  +    G +  + R+  +IK S G  V+   +
Sbjct: 376 KTAERFRPLPPFPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTS-GYRVSPTEV 434

Query: 533 ENVYCVAPIIEDV 545
           E V     ++ + 
Sbjct: 435 EEVAYATGLVAEA 447

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 80.0 bits (197), Expect = 9e-16
 Identities = 63/171 (36%), Positives = 88/171 (51%), Gaps = 11/171 (6%)

Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTE-TCGPTTVCFPDEMCMVGTAGPV 441
           +L+ +++  APL+ E+            VQ  YGLTE +C   T   P++    G A   
Sbjct: 304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKG--HGIAKKN 361

Query: 442 SVYSELRLEEV----PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH 496
           SV   L   EV    P+ G S   + P GE+CVR + +  GYY N + T  +I  DGW H
Sbjct: 362 SVGFILPNLEVKFIDPDTGRSLPKNTP-GELCVRSQCVMQGYYNNKEETDRTIDEDGWLH 420

Query: 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           TGDIG I  +G + I+DR K LIK  +G  VA   LE +    P +ED ++
Sbjct: 421 TGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAV 470

Length = 546

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 76.9 bits (190), Expect = 3e-15
 Identities = 81/354 (22%), Positives = 137/354 (38%), Gaps = 103/354 (29%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           ++  I+YTSG++G+PKGV+L+H  +      +  +L+     +T DD  L+ LP +    
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLE-----LTEDDRILAVLPFSF--- 54

Query: 281 RVIEEY-------FFRRGASV------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
               +Y        FR G ++       +    L  L  +    + T  AGVP  + +  
Sbjct: 55  ----DYGLSQLLTAFRVGGTLVLESRFAFPRDVLKHLAKE----RITGFAGVPTTWAQ-- 104

Query: 328 EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 387
                 L  L PL R  F +                                     LR 
Sbjct: 105 ------LLRLDPLAREDFPS-------------------------------------LRY 121

Query: 388 VISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAGPVS 442
           + + G  L  + + +  R    A L   YGLTE    +T   P+E       +G A P  
Sbjct: 122 LTNAGGALPAKTILQLRRAFPDAKLFSMYGLTE-AFRSTYLPPEELDRRPDSIGKAIP-- 178

Query: 443 VYSELRLEEVPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------ 491
              EL + +         D   C     GE+  RG  +  GY+ +P+ T E +       
Sbjct: 179 -NVELWVVDE--------DGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPG 229

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDV 545
           +   +TGD+ ++   G +  + RK ++IK ++G  V+   +E V C  P++ + 
Sbjct: 230 EIVLYTGDLVRMDEEGYLYFVGRKDDMIK-TRGYRVSPTEIEEVICAHPLVAEA 282

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 77.2 bits (190), Expect = 7e-15
 Identities = 99/354 (27%), Positives = 138/354 (38%), Gaps = 84/354 (23%)

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           P+ W   +    V++ +     P ++  I++TSGT   PKGV LTH   A  ++     L
Sbjct: 167 PFEW--LMRWFGVSDKD-----PEDVAVILFTSGTEKLPKGVPLTH---ANLLANQRACL 216

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
             F  K   DDV +SFLP  H        Y F                      L P LL
Sbjct: 217 KFFSPKE--DDVMMSFLPPFH-------AYGFNSCT------------------LFP-LL 248

Query: 317 AGVPRVF-------EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
           +GVP VF       +KI E I +A           FD +       +    KQ    P  
Sbjct: 249 SGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYI-------LKTAKKQESCLP-- 299

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGP----T 424
                          LR V+ GG      + +E L+      L QGYG TE C P     
Sbjct: 300 --------------SLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTE-CSPVITIN 344

Query: 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           TV  P     VG   P+     + +  V E    P+     G V  RG +LFSGY    D
Sbjct: 345 TVNSPKHESCVGM--PIR---GMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGE-D 398

Query: 485 LTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
             +  +    + W+ TGD+G +  +G + +  R    +KI   E V+LE LE++
Sbjct: 399 FGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIG-AEMVSLEALESI 451

Length = 539

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 75.7 bits (187), Expect = 2e-14
 Identities = 64/169 (37%), Positives = 82/169 (48%), Gaps = 43/169 (25%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPT-----------TVCFPDE 431
            +RL ISG APL  E   EF   T  A L + YG+TET   T           TV FP  
Sbjct: 270 HMRLFISGSAPLLAETHREFQERTGHAIL-ERYGMTETNMNTSNPYDGERRAGTVGFP-- 326

Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC---VRGKTLFSGYYKNPDLTRE 488
             + G          LR+ + PE G + L   P GE+    V+G  +F GY++ P+ T E
Sbjct: 327 --LPGV--------SLRVTD-PETG-AEL---PPGEIGMIEVKGPNVFKGYWRMPEKTAE 371

Query: 489 SI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
               DG+F TGD+G+I   G V I+ R K+LI IS G Y       NVY
Sbjct: 372 EFRADGFFITGDLGKIDERGYVHIVGRGKDLI-ISGG-Y-------NVY 411

Length = 504

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 75.7 bits (186), Expect = 2e-14
 Identities = 112/481 (23%), Positives = 180/481 (37%), Gaps = 76/481 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+   V +I   L   G   G  V     N  ++     AC  +  +  PL      
Sbjct: 55  SYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRE 114

Query: 138 GAVNFILDHAEIDFVFVQDKKVKEL--------LSPDCRSAQRLRVMVCFTSLTAEQKEM 189
             ++F+L+HA+   VFV     +          L         LR +V       +  + 
Sbjct: 115 RELSFMLNHADSK-VFVVPSVFRGFDHAAMARELQSK---LPALRQVVVIDGDGDDSFDR 170

Query: 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
            + T  +  + D    L          P P ++  ++YTSGT+G+PKGV+ T  T+    
Sbjct: 171 VLMTPERDDTPDAAAILAGPR------PSPDDVTQLIYTSGTTGEPKGVMHTANTL---F 221

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLM 309
           S +  + ++ E  +   DV L   P+AH                 G+ +G        LM
Sbjct: 222 SNIHPYAERLE--LGGGDVILMASPMAHQ---------------TGFMYG--------LM 256

Query: 310 ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
              P +L     V + I    + A E +R                   + +       L 
Sbjct: 257 --MPLIL-NATAVLQDIWNPAR-AAELIRETG----------------VTFTMASTPFLT 296

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429
           DL    K        L   +  GAP+   + E       A +V  +G+TE  G  TV  P
Sbjct: 297 DLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTE-NGAVTVTEP 355

Query: 430 D---EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486
           D   E        P+    E+++ +      S  +    G + VRG + F GY K P L 
Sbjct: 356 DDALEKASTTDGRPLPGV-EVKVIDANGAKLSQGE---TGRLLVRGCSNFGGYLKRPHLN 411

Query: 487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVS 546
                +GWF TGD+      G ++I  R K++I I  GE + +  +EN+    P +  V+
Sbjct: 412 STDA-EGWFDTGDLAFQDAEGYIRINGRSKDVI-IRGGENIPVVEIENLLYQHPAVAQVA 469

Query: 547 I 547
           I
Sbjct: 470 I 470

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           GE+ VR  +L  GY+  P+ T E++ DGW HTGDIG+I   G +  + R+K ++K++
Sbjct: 415 GEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVN 471

Length = 567

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 75.7 bits (187), Expect = 2e-14
 Identities = 72/301 (23%), Positives = 115/301 (38%), Gaps = 94/301 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 278
            ++TSG++G PK V+ TH  +    + +        ++     V + +LP  H       
Sbjct: 169 YLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEE---PPVLVDWLPWNHTFGGNHN 225

Query: 279 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
            + V+      +   G  V G +   L  LR    E+ PT+   VP+ FE + +    AL
Sbjct: 226 FNMVLYNGGTLYIDDGKPVPGLFEETLRNLR----EVSPTVYFNVPKGFEMLVD----AL 277

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
           E    LRRR F                                      RLRL+   GA 
Sbjct: 278 ERDAALRRRFF-------------------------------------KRLRLLFYAGAA 300

Query: 395 LSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGPVSV 443
           L  +V + L          R+   +    G G TET    T   +P +      +G + +
Sbjct: 301 LPQDVWDRLQALAVRTTGERIPMTS----GLGATETAPTATFVHWPTDR-----SGVIGL 351

Query: 444 YS---ELRLEEVPEMG-YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
            +   EL+L  VP  G           EV V+G  +  GY+++P+LT E+   +G++  G
Sbjct: 352 PAPGTELKL--VPNGGKL---------EVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIG 400

Query: 499 D 499
           D
Sbjct: 401 D 401

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 75.0 bits (185), Expect = 3e-14
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 21/123 (17%)

Query: 415 YGLTETCGPT-TVCFPDE-MCMVGTAGPVSVYSELRL-----EEVP--EMGYSPLDDPPC 465
           YG TE   P  TV  P+E +   G+AG   +  E R+      +V   E+G         
Sbjct: 319 YGQTEI-APLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVG--------- 368

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 525
            E+  R   L  GY+ +P+ T E+   GWFH+GD+G +   G + ++DRKK++IK + GE
Sbjct: 369 -EIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIK-TGGE 426

Query: 526 YVA 528
            VA
Sbjct: 427 NVA 429

Length = 523

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 74.9 bits (184), Expect = 4e-14
 Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 28/180 (15%)

Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-- 439
             L+ V  G APLS + +++F++       +QGYG+TE+              VGT G  
Sbjct: 319 KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTA------------VGTRGFN 366

Query: 440 --PVSVYSELRLEEVPEMGYSPLD------DPP--CGEVCVRGKTLFSGYYKNPDLTRES 489
              +S YS + L   P M    +D       PP  CGE+ ++G  +  GY  NP  T+ +
Sbjct: 367 TEKLSKYSSVGLL-APNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQST 425

Query: 490 II-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSIS 548
           I  DGW  TGDI     +G + I+DR K +IK  +G  +A   LE V    P I D +++
Sbjct: 426 IDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVT 484

Length = 560

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 73.8 bits (182), Expect = 6e-14
 Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 36/223 (16%)

Query: 78  TYKEVYEEVLQIVSAL-RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           +Y+E+ EE  ++   L +  G   G RV +Y  N PQ+V A  A    + + VP+     
Sbjct: 37  SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96

Query: 137 PGAVNFILDHAEIDFVFV-QD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
              +   +  +      V  +   KV   +        RLR ++           +  + 
Sbjct: 97  EEELAHYVTDSGARVAIVGSELAPKVAPAVG-----NLRLRHVIV----AQYSDYLPAEP 147

Query: 194 GIKPYSW-------DEFLHLGKVNEMEIL-----PP----QPFNICTIMYTSGTSGDPKG 237
            I   +W             G V   E L     PP     P ++  + YTSGT+G PKG
Sbjct: 148 EIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKG 207

Query: 238 VVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            + TH T+ A  V  V           T + V L+ LPL H+ 
Sbjct: 208 CMHTHRTVMANAVGSVLWS------NSTPESVVLAVLPLFHVT 244

Length = 546

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 5/86 (5%)

Query: 466 GEVCVRG---KTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKI 521
           GE+C++G   KT+F  YY +P  T + +  DGW HTGD G +   G    +DR+ N+IK 
Sbjct: 367 GEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKR 426

Query: 522 SQGEYVALEYLENVYCVAPIIEDVSI 547
             GE V+   LEN+    P I+D+ +
Sbjct: 427 G-GENVSCVELENIIATHPKIQDIVV 451

Length = 517

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 72.3 bits (178), Expect = 2e-13
 Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 35/202 (17%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            T+ E++E V+ +   L A G + G RV +   N  + +  + A   L  + V L   L 
Sbjct: 28  VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              + + LD AE+  +   D    + L P           V F  L    KE       +
Sbjct: 88  REELLWQLDDAEVKCLITDDDFEAK-LIPGIS--------VKFAELMNGPKE--EAEIQE 136

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
            +  DE                   + TIMYTSGT+G PKGV+ T+     + S V   L
Sbjct: 137 EFDLDE-------------------VATIMYTSGTTGKPKGVIQTYGN--HWWSAVGSAL 175

Query: 257 DQFEDKMTVDDVYLSFLPLAHI 278
           +     +T DD +L+ +P+ HI
Sbjct: 176 NL---GLTEDDCWLAAVPIFHI 194

Length = 483

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 81/308 (26%), Positives = 116/308 (37%), Gaps = 65/308 (21%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G PKG +  H  +   + GV+L+ +         DV+ +    A I      
Sbjct: 93  LIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELA---PRPGDVFWTPADWAWI------ 143

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                              L D L+   P L  GVP V                  R + 
Sbjct: 144 -----------------GGLLDVLL---PALYFGVPVV----------------AYRMQR 167

Query: 345 FDALYKYKLAWMNMGYKQREA--SPLADLLAFRKV---KARLGGRLRLVISGGAPLSTEV 399
           FD   +   A M   Y    A   P A L   R+V   +AR   RLR V SGG  L  E+
Sbjct: 168 FDP--ERAFALMRR-YGVTNAFLPPTA-LKMMRRVGSERARYDLRLRAVASGGESLGEEL 223

Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVC---FPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
            E+ R      + + YG TE       C    P     +G   P        +  V + G
Sbjct: 224 LEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGH-----EVAVVDDAG 278

Query: 457 YSPLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR 514
             P+     GE+ V+     +F GY+ NP+ T       W  TGD+G+   +G +    R
Sbjct: 279 -RPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGDWLLTGDLGRRDADGYLWFKGR 337

Query: 515 KKNLIKIS 522
             ++IK S
Sbjct: 338 ADDVIKSS 345

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 70.8 bits (174), Expect = 5e-13
 Identities = 48/165 (29%), Positives = 62/165 (37%), Gaps = 51/165 (30%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+  EV ++ S L A G   G RVGIY    P+ V A+ A   +  I VP++   GP
Sbjct: 9   TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFGP 68

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            AV   L  AE   +   D                                         
Sbjct: 69  DAVATRLQDAEAKVLITADG---------------------------------------- 88

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
                FL  GK  +++  P        I+YTSGT+G PKG V TH
Sbjct: 89  -----FLRRGKRVDLKDDP------AMIIYTSGTTGKPKGTVHTH 122

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 71.1 bits (174), Expect = 5e-13
 Identities = 49/155 (31%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEMCMVGTAGP 440
           LR + S  APL+ E  + L+    A +V  +G+TE     T             V + G 
Sbjct: 297 LRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGL 356

Query: 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 500
           V   +  ++  V   G  PL     GEV +RG T+  GY  +P +T  +  DGW  TGD+
Sbjct: 357 VGRSTGAQIRIVGSDG-LPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDL 415

Query: 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
           G +   G + I  R K LI    GE ++ E +E V
Sbjct: 416 GSLSAAGDLSIRGRIKELINRG-GEKISPERVEGV 449

Length = 534

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.2 bits (170), Expect = 2e-12
 Identities = 56/168 (33%), Positives = 75/168 (44%), Gaps = 29/168 (17%)

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429
           D LA   +  R    LR +  GGA +   V E L+       V+GYGLTET   T    P
Sbjct: 292 DFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPP 351

Query: 430 DE---MCM-VGTAG-------PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           D     C+ + T G       P +      LEE+P            GE+ V G  +F G
Sbjct: 352 DRPKLQCLGIPTFGVDARVIDPET------LEELP--------PGEVGEIVVHGPQVFKG 397

Query: 479 YYKNPDLTRESII--DG--WFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           Y+  P+ T E+ I  DG  +F TGD+G++   G   I DR K +I  S
Sbjct: 398 YWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINAS 445

Length = 546

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 69.1 bits (170), Expect = 2e-12
 Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 34/191 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT 134
           TY+E  EEV  +   L A G E G RVGI+  N P+WV    A   +  I V   P Y  
Sbjct: 45  TYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL 104

Query: 135 LGPGAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQ 186
                + + L+ +    +   D          + EL  P+  + +  +       L + +
Sbjct: 105 ---SELEYALNQSGCKALIAADGFKDSDYVAMLYELA-PELATCEPGQ-------LQSAR 153

Query: 187 K---EMAVQTGIKP----YSWDEFLHLGKVNEMEILPP-----QPFNICTIMYTSGTSGD 234
                  +  G +      ++DE L LG+  +   L        P +   I YTSGT+G 
Sbjct: 154 LPELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGF 213

Query: 235 PKGVVLTHETI 245
           PKG  LTH  I
Sbjct: 214 PKGATLTHRNI 224

Length = 559

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 67.1 bits (165), Expect = 8e-12
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 10/72 (13%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
           GE+C RG ++  GY+ +P+ T E+I  DGW HTGD+  +   G V I+ R K++I I  G
Sbjct: 399 GELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMI-IRGG 457

Query: 525 EYVALEYLENVY 536
                   EN+Y
Sbjct: 458 --------ENIY 461

Length = 559

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 67.3 bits (165), Expect = 9e-12
 Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 33/181 (18%)

Query: 385 LRLVISGGAPLS-TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC-----MVGTA 438
           L  V  G +P+S   + E +      F  Q YG TE     T     +        + + 
Sbjct: 283 LETVYYGASPMSPVRLAEAIERFGPIF-AQYYGQTEAPMVITYLRKRDHDPDDPKRLTSC 341

Query: 439 GPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
           G  +    + L      EV         +   GE+CVRG  +  GY+  P+ T E+  DG
Sbjct: 342 GRPTPGLRVALLDEDGREVA------QGEV--GEICVRGPLVMDGYWNRPEETAEAFRDG 393

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI-IEDVSISYSSV 552
           W HTGD+ +   +G   I+DRKK++I ++ G         NV+   P  +EDV   + +V
Sbjct: 394 WLHTGDVAREDEDGFYYIVDRKKDMI-VTGG--------FNVF---PREVEDVLAEHPAV 441

Query: 553 S 553
           +
Sbjct: 442 A 442

Length = 524

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 79/323 (24%), Positives = 123/323 (38%), Gaps = 77/323 (23%)

Query: 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274
           L    F     MYTSGT+G PKGV +    +A F + +   +D     +  DDV+ +   
Sbjct: 86  LDDDLF---AQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAID-----LRDDDVFWN--- 134

Query: 275 LAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
                            A  G+ +G   A+        P L  G+  VF    EG   A 
Sbjct: 135 ----------------IADPGWAYGLYYAI------TGP-LAMGITTVF---LEGGFTA- 167

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKA-------RLGGRLRL 387
                     +D L +  +   N        SP A    +R + A       R+  +LR+
Sbjct: 168 -------ENTYDVLERLGVT--NFAG-----SPTA----YRMLMAAGADAAARIKLKLRV 209

Query: 388 VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG----PVSV 443
             S G PL+ EV  + +      +   YG TET     V     +     AG    P+  
Sbjct: 210 ASSAGEPLNPEVVRWFQANLGVTIHDHYGQTET--GMPVGNHHALAHEVRAGSMGLPLPG 267

Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTGD 499
           Y    L++  +    PL D   G++ +   +     FSGY+ +P+ T E I   W+ TGD
Sbjct: 268 YRIAVLDDDGQ----PLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVTGD 323

Query: 500 IGQILPNGVVKIIDRKKNLIKIS 522
           + +   +G    I R  ++I  +
Sbjct: 324 LVERDEDGYFWFIGRADDVIISA 346

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 64.1 bits (156), Expect = 7e-11
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 28/158 (17%)

Query: 383 GRLRLVISGGAPLSTE-----VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV-- 435
             L  + +GGAP + E     +++ + +        G+G++E    T      +  ++  
Sbjct: 252 RHLTALFTGGAPHAAEDILGWLDDGIPMVD------GFGMSE--AGTVFGMSVDCDVIRA 303

Query: 436 --GTAGPVSVYSELRLEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESI 490
             G AG  +   + R+  V + G    +D P G   E+ +RG  L  GY++ P  T  + 
Sbjct: 304 KAGAAGIPTPTVQTRV--VDDQG----NDCPAGVPGELLLRGPNLSPGYWRRPQATARAF 357

Query: 491 I-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 527
             DGWF TGDI +   +G   ++DRKK++  IS GE V
Sbjct: 358 TGDGWFRTGDIARRDADGFFWVVDRKKDMF-ISGGENV 394

Length = 488

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 63.7 bits (156), Expect = 9e-11
 Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 35/199 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   ++   LRA G  PG  V +     P+ V A+ A        VPL      
Sbjct: 14  TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPA 73

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + F+L+ +    +   +                   +V        +           
Sbjct: 74  ERLAFMLEDSGARVLLTDESLAPLA-------RADQLPLVILEEELDAEDAGPPA----- 121

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                                  ++  +MYTSG++G PKGV + H  +   V   + ++ 
Sbjct: 122 -----------------PAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTN-YIA 163

Query: 258 QFEDKMTVDDVYLSFLPLA 276
                   DD +L   PL+
Sbjct: 164 LDP-----DDRFLQLSPLS 177

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 64.0 bits (156), Expect = 9e-11
 Identities = 93/460 (20%), Positives = 140/460 (30%), Gaps = 106/460 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +  E+   V ++ + L A G   G RV ++  NC +WV    AC  L    + +      
Sbjct: 37  SRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRS 96

Query: 138 GAVNFILDHAEIDFVFVQDK-------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
             V  IL      ++ V           +   + PD     R   +V   +         
Sbjct: 97  HEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPG 156

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYT-SGTSGDPKGV------VLTHE 243
            +  +        L                +   +++T SGT+  PK V      +L H 
Sbjct: 157 ARVQLFA------LPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHA 210

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNA 303
                  G D              V L+ LP                G   G+       
Sbjct: 211 RAIARAYGYD-----------PGAVLLAALPFC--------------GV-FGF------- 237

Query: 304 LRDDLMELKPTLLAGVPRVFEKIHEGIK--KALEELR--------PLRRRIFDALYKYKL 353
                  L   L  G P V E + +  +  +AL   R         + RRI D       
Sbjct: 238 -----STLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA----- 287

Query: 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL-----STEVEEFLRVTCC 408
                   +R   P A L  F      LG    L  + G PL     S+EV+  +     
Sbjct: 288 -------GERADFPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALV----- 335

Query: 409 AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEV 468
                         P T      +      G      E R+        + L D   GE+
Sbjct: 336 -----------ALQPATDPVSVRI----EGGGRPASPEARVRARDPQDGALLPDGESGEI 380

Query: 469 CVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNG 507
            +R  +L  GY  NPD T  ++  DG+F TGD+G    +G
Sbjct: 381 EIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDG 420

Length = 540

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 63.4 bits (155), Expect = 1e-10
 Identities = 48/212 (22%), Positives = 73/212 (34%), Gaps = 28/212 (13%)

Query: 75  VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT 134
             +T+ E Y    ++ SAL   G   G  V +   N P  VEA         +   L   
Sbjct: 42  RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTR 101

Query: 135 LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK------- 187
           L   ++ F+L H E   + V D +  E+           + +V                 
Sbjct: 102 LDAASIAFMLRHGEAKVLIV-DTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGAL 160

Query: 188 --EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 245
             E  + +G   ++W              LP   ++   + YTSGT+G+PKGVV  H   
Sbjct: 161 DYEAFLASGDPDFAW-------------TLPADEWDAIALNYTSGTTGNPKGVVYHHRGA 207

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                      +     M    VYL  LP+ H
Sbjct: 208 YLNALS-----NILAWGMPKHPVYLWTLPMFH 234

Length = 545

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 63.8 bits (156), Expect = 1e-10
 Identities = 50/160 (31%), Positives = 69/160 (43%), Gaps = 28/160 (17%)

Query: 385  LRLVISGGAPLSTEVEEF------LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438
            LR V +G   +  E  +       +R+      ++GYG+TET  P            GT 
Sbjct: 909  LRYVFAGAEKVKEETRQTWMEKFGIRI------LEGYGVTET-APVIALNTPMHNKAGTV 961

Query: 439  GPVSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIIDGW 494
            G +    E RLE VP  + G         G + VRG  +  GY +  NP    E   DGW
Sbjct: 962  GRLLPGIEYRLEPVPGIDEG---------GRLFVRGPNVMLGYLRAENPG-VLEPPADGW 1011

Query: 495  FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
            + TGDI  I   G + I  R K   KI+ GE ++L  +E 
Sbjct: 1012 YDTGDIVTIDEEGFITIKGRAKRFAKIA-GEMISLAAVEE 1050

Length = 1140

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 75/360 (20%), Positives = 138/360 (38%), Gaps = 35/360 (9%)

Query: 42  NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101
            +  +++  SV ++   R LG       + G   W TY  V     ++ S L A G  PG
Sbjct: 427 RSLGEMWERSVTRHSTFRCLG----QTSESGESEWLTYGTVDARARELGSGLLALGVRPG 482

Query: 102 CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG-AVNFILDHAEIDFVFVQDKKVK 160
             +G+        V    AC       +PL   +G G  +  ++D  +I  VF     V 
Sbjct: 483 DVIGVDCEASRNIVILEVACALYGFTTLPL---VGKGSTMRTLIDEHKIKVVFADRNSVA 539

Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ-TGIKPYSWDEFLHLGKVNEMEILPPQP 219
            +L+  CRS ++L  +V   S   E      +   I    ++     G+   +  +P + 
Sbjct: 540 AILT--CRS-RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGR---LCPVPLKE 593

Query: 220 FNICTIMYT-------SGTSGDPKGVVLTHETIATFVS---GVDLFLDQFEDKMTVDDVY 269
                 ++T       S +      V +TH  +   +S      +    F+  + V    
Sbjct: 594 HVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMV---- 649

Query: 270 LSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             F P A + +RV     F  G++V     D   L+   ++ +PT+L   P +F      
Sbjct: 650 -HFTPFAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQ 706

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
           + +A E    +   +F+  ++ +   +N+    R  S L   + FR  +  LGG +  ++
Sbjct: 707 LSRANERYSAVYSWLFERAFQLRSRLINI---HRRDSSLLRFIFFRATQELLGGCVEKIV 763

Length = 1452

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 62.6 bits (152), Expect = 3e-10
 Identities = 105/458 (22%), Positives = 167/458 (36%), Gaps = 78/458 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+  +V ++ +ALR  G +   RV +   +   +  A        ++ V L   L  
Sbjct: 32  SYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               ++L+ +    VFV   ++  ++      +  L   V      A + ++A       
Sbjct: 92  DDYAYMLEDSRARVVFVS-GELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLA------- 143

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI---ATFVSGVDL 254
               E L      + +    Q  +    +Y+SG++G PKGVV TH      A   +   L
Sbjct: 144 ----ELLATE-SEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL 198

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
            + +       DDV  S   L           FF  G          NAL         T
Sbjct: 199 GIRE-------DDVVFSAAKL-----------FFAYGLG--------NAL---------T 223

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK---LAWMNMGYKQREASPLADL 371
               V         G    L   RP    +FD L +++      +   Y        A +
Sbjct: 224 FPMSV---------GATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLY--------AAM 266

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           LA   + A    RLRL  S G  L  EV +  +      +V G G TE         P +
Sbjct: 267 LADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGD 326

Query: 432 MCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
           +   GT+G PV  Y   RL  V + G       P GE+ + G +  + Y+ N   TR++ 
Sbjct: 327 V-RYGTSGKPVPGY---RLRLVGDGGQDVAAGEP-GELLISGPSSATMYWNNRAKTRDTF 381

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
              W  +GD      +G      R  +++K+S G YV+
Sbjct: 382 QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVS-GIYVS 418

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 62.6 bits (153), Expect = 3e-10
 Identities = 53/173 (30%), Positives = 74/173 (42%), Gaps = 38/173 (21%)

Query: 385  LRLVISGGAPLSTEVEEFLRVTCCAF-------LVQGYGLTETCGPTTVCFPDEMC---- 433
            LRLV++G   L  EV +       AF       +++GYG TET    +V  PD +     
Sbjct: 900  LRLVVAGAEKLKPEVAD-------AFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK 952

Query: 434  --------MVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
                     VG   P V+V    R+  V    +  L     G + + G  +  GY  +P+
Sbjct: 953  RQTGSKEGSVGMPLPGVAV----RI--VDPETFEELPPGEDGLILIGGPQVMKGYLGDPE 1006

Query: 485  LTRESIID----GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
             T E I D    GW+ TGD G +  +G + I DR     KI  GE V L  +E
Sbjct: 1007 KTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIG-GEMVPLGAVE 1058

Length = 1146

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 62.2 bits (152), Expect = 4e-10
 Identities = 69/302 (22%), Positives = 108/302 (35%), Gaps = 96/302 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 278
            ++TSG++G PK V+ TH  +      +        ++     V + +LP  H       
Sbjct: 214 FLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEE---PPVLVDWLPWNHTFGGNHN 270

Query: 279 LDRVIEEYFFRRGASVGYYHGD---LNALRD----DLMELKPTLLAGVPRVFEKIHEGIK 331
           L  V+       G +   Y  D        D    +L E+ PT+   VP+ +E     + 
Sbjct: 271 LGIVL-----YNGGT--LYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWE----MLV 319

Query: 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 391
            ALE    LRRR F                                      RL+L+   
Sbjct: 320 PALERDAALRRRFF-------------------------------------SRLKLLFYA 342

Query: 392 GAPLSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGP 440
           GA LS +V + L          R+        G G+TET    T    P        AG 
Sbjct: 343 GAALSQDVWDRLDRVAEATCGERIRMMT----GLGMTETAPSATFTTGPLSR-----AGN 393

Query: 441 VSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHT 497
           + +         P  E+   P+      EV V+G  +  GY++ P+LT E+  + G++ +
Sbjct: 394 IGL-------PAPGCEVKLVPVGGKL--EVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS 444

Query: 498 GD 499
           GD
Sbjct: 445 GD 446

Length = 614

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.3 bits (149), Expect = 7e-10
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 518
           P D    G++ VRG  +   Y++        ++DGWF TGD+  I  +G ++I DR K++
Sbjct: 378 PWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDADGFMQITDRSKDV 434

Query: 519 IKISQGEYVALEYLENV 535
           IK S GE+++   +ENV
Sbjct: 435 IK-SGGEWISSIDIENV 450

Length = 539

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 61.7 bits (150), Expect = 8e-10
 Identities = 102/477 (21%), Positives = 161/477 (33%), Gaps = 130/477 (27%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+  +  ++   L A+G  P   VGI      + V  + A        VPL      
Sbjct: 539 SYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQ 598

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + ++LD + +  +  Q   + +L  P       LR +     L      +   +G  P
Sbjct: 599 DRLAYMLDDSGVRLLLTQSHLLAQLPVPA-----GLRSLC----LDEPADLLCGYSGHNP 649

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                            +   P N+  ++YTSG++G PKGV ++H  +A +V  +   L 
Sbjct: 650 E----------------VALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQ 693

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV---GY-YHGDLNALRDDLMEL 311
                +  DD  L     A   D  + E F     GA++         D  A    + + 
Sbjct: 694 -----LAADDSMLMVSTFA--FDLGVTELFGALASGATLHLLPPDCARDAEAFAALMADQ 746

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
             T+L  VP   + + +     +   RP R  +                   EA  + DL
Sbjct: 747 GVTVLKIVPSHLQALLQA--SRVALPRPQRALVCGG----------------EALQV-DL 787

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           LA R      G R                          L+  YG TE    TTV     
Sbjct: 788 LA-RVRALGPGAR--------------------------LINHYGPTE----TTV----- 811

Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP--------------PC-----GEVCVRG 472
                         EL  EE    G  P+  P              P      GE+ + G
Sbjct: 812 ---------GVSTYELSDEERD-FGNVPIGQPLANLGLYILDHYLNPVPVGVVGELYIGG 861

Query: 473 KTLFSGYYKNPDLTRESII------DG--WFHTGDIGQILPNGVVKIIDRKKNLIKI 521
             L  GY++ P LT E  +      DG   + TGD+ +   +GV++ + R  + +KI
Sbjct: 862 AGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKI 918

Length = 3956

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 60.3 bits (147), Expect = 1e-09
 Identities = 52/204 (25%), Positives = 76/204 (37%), Gaps = 32/204 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+      I + L+A G  PG RV +       +V A   C     I VP       
Sbjct: 25  TYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83

Query: 138 GA----VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
           G     +  IL  A    V      V   L     +   L +++      A     A+  
Sbjct: 84  GRHLARLAAILADAGARAVLT-TSAVLAALRAALAAPAALLLLLIAADDLA-----ALAA 137

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
                 W               PP P +I  + YTSG++G PKGV++TH  +   ++ + 
Sbjct: 138 A----DW------------RPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNL---LANLR 178

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAH 277
                F   +  DDV +S+LPL H
Sbjct: 179 AIARAFG--LDPDDVGVSWLPLYH 200

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 52/218 (23%), Positives = 83/218 (38%), Gaps = 40/218 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++++EV  +   LRA G +   R+ +   N   WV A  AC    ++C+P+      
Sbjct: 4   SYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFSA 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                +L+ A  D +   D        PD  SA                      T    
Sbjct: 61  QQTQHLLNDAGADLLISDD--------PDAASALH--------------------TPFAT 92

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
              D ++ L            P     I YTSG++G PKGV L+   + T    V   L 
Sbjct: 93  LGEDLYIALRPSAN---PVELPAGTAKITYTSGSTGQPKGVCLSAAALET----VAQSLA 145

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASV 294
           +    +   + +L  LPLA +L+ +   Y     GA+V
Sbjct: 146 EAIA-ILEPERHLCLLPLATLLENIAGVYAPLLMGATV 182

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 58.6 bits (142), Expect = 4e-09
 Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 17/173 (9%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTAG 439
           L+L+  GGA  S      +       L Q +G+ E      V +     P E+       
Sbjct: 300 LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEG----LVNYTRLDDPAEIIFTTQGR 355

Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
           P+S   E+R+  V + G +P+     G +  RG   F GYYK P+    +   +G+++TG
Sbjct: 356 PMSPDDEVRV--VDDHG-NPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG 412

Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED---VSIS 548
           D+ ++ P G + ++ R K+ I    GE +A E +EN+    P + D   VS+ 
Sbjct: 413 DLVRLTPEGYIVVVGRAKDQIN-RGGEKIAAEEIENLLLAHPAVHDAALVSMP 464

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 57.6 bits (140), Expect = 7e-09
 Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 27/155 (17%)

Query: 383 GRLRL-VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-P 440
           GR  L  + GG  L  ++ E L  T    L   YG TET   +T           T G P
Sbjct: 205 GRESLTALCGGEALPRDLAERLLSTGAE-LWNMYGPTETTIWSTCARVTAADGPVTIGRP 263

Query: 441 V---SVY---SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG- 493
           +    VY    +L+   VP  G         GE+ + G  +  GY   P+LT E  +   
Sbjct: 264 IANTQVYVLDEDLQP--VPP-GV-------PGELYIGGDGVARGYLGRPELTAERFVPDP 313

Query: 494 -------WFHTGDIGQILPNGVVKIIDRKKNLIKI 521
                   + TGD+ +  P+G ++ + R  + +KI
Sbjct: 314 FDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKI 348

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 57.6 bits (140), Expect = 9e-09
 Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 30/165 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+      I +ALRA+G  PG  V +      + + A+          VP+      
Sbjct: 14  TYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPA 73

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                IL  A    V       +         A  L V+                     
Sbjct: 74  ERRAAILARAGARAVLTDPGLAQP------EEAPDLLVVAD------------------- 108

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
              D                 P ++  +++TSG++G+PKGV++TH
Sbjct: 109 ---DAAAAESP--APPPPRVDPDDLAYVIFTSGSTGEPKGVMITH 148

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 57.6 bits (140), Expect = 9e-09
 Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 28/197 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   ++   L A G  PG  VGIY  N  ++VEAM        + V +      
Sbjct: 30  TYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVE 89

Query: 138 GAVNFILDHAEIDFVFVQDK---KVKELLSPDCRSAQRLRVMVCF-TSLTAEQKEMAVQT 193
             + ++LD ++   +  + +   +V E+L        +LR +V        +    AV  
Sbjct: 90  DELRYLLDDSDAVALVYEREFAPRVAEVLP----RLPKLRTLVVVEDGSGNDLLPGAV-- 143

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
                 +++ L  G   E +     P ++  ++YT GT+G PKGV+   E         D
Sbjct: 144 -----DYEDALAAGS-PERDFGERSPDDL-YLLYTGGTTGMPKGVMWRQE---------D 187

Query: 254 LFLDQFE--DKMTVDDV 268
           +F       D  T + +
Sbjct: 188 IFRVLLGGRDFATGEPI 204

Length = 533

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 43/186 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY ++ + + + + A  A G   G  V +   N P+ + A+ A     L    L+    P
Sbjct: 39  TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALH----P 94

Query: 138 -GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
            G+++   DHA +    ++D  +  L+       +R   ++            A    +K
Sbjct: 95  LGSLD---DHAYV----LEDAGISTLIVDPAPFVERALALL------------ARVPSLK 135

Query: 197 PYSWDEFLHLGKVNEMEIL-------PPQPF-------NICTIMYTSGTSGDPKGVVLTH 242
                  L LG V +   L        P P        +I  + YT GT+G PKGV+ TH
Sbjct: 136 -----HVLTLGPVPDGVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTH 190

Query: 243 ETIATF 248
            +IAT 
Sbjct: 191 RSIATM 196

Length = 524

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 58.0 bits (140), Expect = 1e-08
 Identities = 106/468 (22%), Positives = 166/468 (35%), Gaps = 112/468 (23%)

Query: 78   TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
            TY E+     ++  AL A G  P   VGI          AME   +  ++ V L   L  
Sbjct: 4578 TYAELNRRANRLAHALIARGVGPEVLVGI----------AME--RSAEMM-VGLLAVLKA 4624

Query: 138  GAVNFILDHAEIDF------VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
            G     LD    ++        ++D     LL+      QRL +     SL  ++ E   
Sbjct: 4625 GGAYVPLD---PEYPRERLAYMMEDSGAALLLT-QSHLLQRLPIPDGLASLALDRDE--- 4677

Query: 192  QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
                    W+     G       +   P N+  ++YTSG++G PKGV ++H +    V+ 
Sbjct: 4678 -------DWE-----GFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGS---LVNH 4722

Query: 252  VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASVGYYHGDLNALRDDLM 309
            +    +++E  +T DD  L F+  +   D   E  +     GASV         +RDD +
Sbjct: 4723 LHATGERYE--LTPDDRVLQFMSFS--FDGSHEGLYHPLINGASV--------VIRDDSL 4770

Query: 310  ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
                 L A       +IHE           +   +F  +Y  +LA          A    
Sbjct: 4771 WDPERLYA-------EIHE---------HRVTVLVFPPVYLQQLA--------EHAERDG 4806

Query: 370  DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET--------C 421
            +  + R               G A      +   R     +L  GYG TET         
Sbjct: 4807 EPPSLRVY----------CFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKA 4856

Query: 422  GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
                 C    M +    G  S Y       V +   +PL     GE+ + G+ +  GY +
Sbjct: 4857 RDGDACGAAYMPIGTPLGNRSGY-------VLDGQLNPLPVGVAGELYLGGEGVARGYLE 4909

Query: 482  NPDLTRESIIDGWF--------HTGDIGQILPNGVVKIIDRKKNLIKI 521
             P LT E  +   F         TGD+ +   +GV+  + R  + +KI
Sbjct: 4910 RPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKI 4957

Length = 5163

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 6/164 (3%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           L  V   GA +   V E +        V  YG TE      +  P      GT      +
Sbjct: 271 LEHVTFAGATMPDAVLERVNQHLPGEKVNIYGTTEAMNSLYMRDPRT----GTEMRPGFF 326

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCV-RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
           SE+R+  +       L +   GE+ V      F+GY   P  T E + DGW+ T D+  +
Sbjct: 327 SEVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKLQDGWYRTSDVAVV 386

Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
            P+G V+I+ R  ++I IS GE +    +E V   AP + +V +
Sbjct: 387 DPSGTVRILGRVDDMI-ISGGENIHPSEVERVLGRAPGVTEVVV 429

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 56.9 bits (137), Expect = 2e-08
 Identities = 70/317 (22%), Positives = 116/317 (36%), Gaps = 66/317 (20%)

Query: 219  PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
              N+  ++YTSG++G PKGV ++H  +                +++  D  L F+  +  
Sbjct: 2145 GENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAA-----GERYELSPADCELQFMSFS-- 2197

Query: 279  LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
             D   E++F     GA V         +RDD +     L   + R       G+      
Sbjct: 2198 FDGAHEQWFHPLLNGARV--------LIRDDELWDPEQLYDEMER------HGVTIL--- 2240

Query: 337  LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
                    F  +Y  +LA     + +R+  P A               +R+   GG  + 
Sbjct: 2241 -------DFPPVYLQQLA----EHAERDGRPPA---------------VRVYCFGGEAVP 2274

Query: 397  TE-VEEFLRVTCCAFLVQGYGLTETCGPTTV--CFPDEMCMVGTAG-PVSVYSELRLEEV 452
               +          +L  GYG TE      +  C P + C  G A  P+      R   +
Sbjct: 2275 AASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPC--GAAYVPIGRALGNRRAYI 2332

Query: 453  PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF--------HTGDIGQIL 504
             +   + L     GE+ + G+ L  GY   P LT E  +   F         TGD+ +  
Sbjct: 2333 LDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYR 2392

Query: 505  PNGVVKIIDRKKNLIKI 521
             +GVV+ + R  + +KI
Sbjct: 2393 ADGVVEYLGRIDHQVKI 2409

Length = 5163

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 56.0 bits (136), Expect = 2e-08
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 38/160 (23%)

Query: 385 LRLVISGGAPLSTEVEEFLR---VTC-CAFLVQGYGLTETCGPTTVCFP--DEMCMVGTA 438
           L+ V+ GGA +  E+ E      + C C     GYGLTE    +TVC    D +  VG+ 
Sbjct: 242 LKAVLLGGAAIPVELTEQAEQQGIRCWC-----GYGLTEMA--STVCAKRADGLAGVGSP 294

Query: 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP---DLTRESIIDGWF 495
            P     E++L +              GE+ +RG +L  GY++      L  +   +GWF
Sbjct: 295 LP---GREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVND---EGWF 334

Query: 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
            T D G+   NG + I+ R  NL   S GE +  E +E V
Sbjct: 335 ATRDRGEWQ-NGELTILGRLDNLF-FSGGEGIQPEEIERV 372

Length = 458

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 55/222 (24%), Positives = 81/222 (36%), Gaps = 49/222 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G   W T++E+   V  + +AL A G   G R+ ++  NC Q  E+M A   L  + VP 
Sbjct: 29  GDRSW-TWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVP- 86

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------- 182
                    NF     E+ ++                 A   R M+C             
Sbjct: 87  --------TNFRQTPDEVAYL---------------AEASGARAMICHADFPEHAAAVRA 123

Query: 183 TAEQKEMAVQTGIKPY--SWDEFL--HLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKG 237
            +      V  G       ++  +  HLG +V    +    P   C   +TSGT+G PK 
Sbjct: 124 ASPDLTHVVAIGGARAGLDYEALVARHLGARVANAAVDHDDP---CWFFFTSGTTGRPKA 180

Query: 238 VVLTHETIATFVSG--VDLFLDQFEDKMTVDDVYLSFLPLAH 277
            VLTH  +A  ++    DL         T  D  L   PL+H
Sbjct: 181 AVLTHGQMAFVITNHLADLMPG-----TTEQDASLVVAPLSH 217

Length = 528

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 55.5 bits (133), Expect = 5e-08
 Identities = 94/487 (19%), Positives = 153/487 (31%), Gaps = 87/487 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA-MEACNALSLICVPLYDTLG 136
           TY EVY+   +++  LRA G   G RV   G N  + +EA        +++       L 
Sbjct: 26  TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHT-ANPRLS 84

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
           P  + +IL+HAE   +         LL            +          +        K
Sbjct: 85  PKEIAYILNHAEDKVLLFD----PNLLPL---VEAIRGELKTVQHFVVMDE--------K 129

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
                         E + +       C + YT+GT+G PKGVV +H  +        L  
Sbjct: 130 APEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD 189

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR---------DD 307
                +     V L  +P+ H+         +    +                     + 
Sbjct: 190 GTALSEKD---VVLPVVPMFHVNAWC---LPY----AATLVGAKQVLPGPRLDPASLVEL 239

Query: 308 LMELKPTLLAGVPRVFEKI---HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
                 T  AGVP V+  +    E                     K     +  G     
Sbjct: 240 FDGEGVTFTAGVPTVWLALADYLESTGHR---------------LKTLRRLVVGG----- 279

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC--G 422
           ++    L+A  +        + +    G    TE                  +       
Sbjct: 280 SAAPRSLIARFER-----MGVEVRQGYGL---TET---------------SPVVVQNFVK 316

Query: 423 PTTVCFPDEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
                  +E  + +     + +          E    P D    GEV ++G  +  GYY 
Sbjct: 317 SHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYG 376

Query: 482 NPDLTR-ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           N + TR     DG+F TGDI      G V+I DR K+LIK   GE+++   LEN     P
Sbjct: 377 NEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHP 435

Query: 541 IIEDVSI 547
            +++ ++
Sbjct: 436 KVKEAAV 442

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 54.8 bits (132), Expect = 7e-08
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 10/205 (4%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           T+  +      +  AL    G     RVG    NC + +E + A   +  +  PL   L 
Sbjct: 40  TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              +  I++HAE D V V D ++ E L    +    +R +V      A+     +  GIK
Sbjct: 100 NDQIVHIINHAE-DEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIK 158

Query: 197 PYSWDEFLHLGKVNEMEILPPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            YS++  L  G+    +  P         I Y++GT+G PKGVV +H   + ++  + L 
Sbjct: 159 VYSYEALLD-GRSTVYD-WPELDETTAAAICYSTGTTGAPKGVVYSHR--SLYLQSLSLR 214

Query: 256 -LDQFEDKMTVDDVYLSFLPLAHIL 279
             D     +T  + +L  +P+ H+L
Sbjct: 215 TTDSL--AVTHGESFLCCVPIYHVL 237

Length = 576

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 54.7 bits (132), Expect = 8e-08
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 19/148 (12%)

Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV---GTAG- 439
           LR   + G PL+ EV   F   T    L++G+G TET    T+       M    G+ G 
Sbjct: 303 LRYCTTAGEPLNPEVFNTFKEKTGIK-LMEGFGQTET----TLTIATFPWMEPKPGSMGK 357

Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR---GKT--LFSGYYKNPDLTRESIIDGW 494
           P   Y    ++ +   G    +    GE+ +R   GK   LF GYY++P+ T E   DG+
Sbjct: 358 PSPGYD---IDIIDPDG-KSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGY 413

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           +HTGD   +  +G +  + R  +LIK S
Sbjct: 414 YHTGDTAWMDEDGYLWFVGRADDLIKSS 441

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTAG 439
           LRL+  GGA LS  +   +       L Q +G+ E      V +     P E+ ++ T G
Sbjct: 307 LRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEG----LVNYTRLDDPPEI-IIHTQG 361

Query: 440 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT 497
            P+S   E+R+  V   G +P+     GE+  RG     GYY+ P+    +   DG++ +
Sbjct: 362 RPLSPDDEVRV--VDADG-NPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRS 418

Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           GD+ +  P+G + +  R K+ I    GE +A E +EN+    P + D
Sbjct: 419 GDLVRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHD 464

Length = 542

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 67/300 (22%), Positives = 110/300 (36%), Gaps = 81/300 (27%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI------ 278
            ++TSG++G PK V+ T   +   ++  +       +      V L ++P  H       
Sbjct: 225 YLFTSGSTGMPKAVINTQRMMCANIAMQEQLRP--REPDPPPPVSLDWMPWNHTMGGNAN 282

Query: 279 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
            + ++      +   G  + G +   +  LR    E+ PT+   VP  +  + E    A+
Sbjct: 283 FNGLLWGGGTLYIDDGKPLPGMFEETIRNLR----EISPTVYGNVPAGYAMLAE----AM 334

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
           E+   LRR  F                                       LRL+  GGA 
Sbjct: 335 EKDDALRRSFFK-------------------------------------NLRLMAYGGAT 357

Query: 395 LSTEVEEFLRVTCCA------FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR 448
           LS ++ E ++               GYG TET  PTT     +   VG  G      EL+
Sbjct: 358 LSDDLYERMQALAVRTTGHRIPFYTGYGATET-APTTTGTHWDTERVGLIGLPLPGVELK 416

Query: 449 LEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 504
           L              P G   EV V+G  +  GY+K+P+LT  +   +G++  GD  + +
Sbjct: 417 L-------------APVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFV 463

Length = 624

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++ + L A G  PG RV +   NCP+++ A  A N L  + VP+   L  
Sbjct: 5   TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64

Query: 138 GAVNFILDHAEIDFVFV 154
             +  ILDH+    + V
Sbjct: 65  EELAHILDHSGARLIVV 81

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 8/62 (12%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL----DQFEDKMTVDDVYLSFLPLA 276
           ++  IMY+SGT+G  KGVVLTH      ++ V+LF+     Q+E   + D+VYL+ LP+ 
Sbjct: 199 DVAAIMYSSGTTGASKGVVLTHR---NLIAMVELFVRFEASQYEYPGS-DNVYLAALPMF 254

Query: 277 HI 278
           HI
Sbjct: 255 HI 256

Length = 560

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 34/158 (21%)

Query: 385 LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTT--VCFP-DEMCMVGTAGP 440
           LR ++ GG  LS   V   L       L+ GYG TE    TT   C     +     + P
Sbjct: 242 LRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTEN---TTFSTCHVITRLDEAADSIP 298

Query: 441 V-------SVY---SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
           +       +VY    E +   +   G          E+ V G  L  GY   P+LT E  
Sbjct: 299 IGRPIPNTTVYILDEEGQPVPIGVPG----------ELYVGGDGLALGYLNRPELTAERF 348

Query: 491 ID-----G--WFHTGDIGQILPNGVVKIIDRKKNLIKI 521
           +      G   + TGD+ +  P+G ++ + R    +KI
Sbjct: 349 VPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKI 386

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 27/176 (15%)

Query: 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEE---FLRVTCCAFLVQGYGLTETCGPTTVC 427
           L+A  +        LR V  GGA +S  + +    L +     + +GYGL+E     ++ 
Sbjct: 225 LVAAVEQGPLPPESLRFVAVGGARVSPSLLQRARALGLP----VYEGYGLSECASVVSLN 280

Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
            P      G+ G    + ++ +            D   GE+ VRG +L  GY   P  T 
Sbjct: 281 TPGAD-RPGSVGKPLPHVQVSIAN----------D---GEILVRG-SLMLGYLGEPPAT- 324

Query: 488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
               D W+ TGD+G +   G + I  RKKNLI  S G  V+ E++E+    AP I 
Sbjct: 325 ----DDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIA 376

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
            PL +   G +CVRG +L SGY+++ +       DGW  TGD+G +L +G + I  R K+
Sbjct: 404 MPLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYLL-DGYLYITGRAKD 462

Query: 518 LIKI 521
           LI I
Sbjct: 463 LIII 466

Length = 579

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 91/459 (19%), Positives = 144/459 (31%), Gaps = 125/459 (27%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ E   +  + L + G   G RV       P+   A      L  +  PL+   GP
Sbjct: 2   SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                I D  E+                        +V++    L    +    +     
Sbjct: 62  EP---IRDRLEL---------------------GEAKVLITTPEL---YERTDPEDPA-- 92

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                 LH                     +TSGT+G PKGV+  H  +    +     LD
Sbjct: 93  -----LLH---------------------FTSGTTGKPKGVLHVHRAVVAHYATARYVLD 126

Query: 258 QFEDKM---TVDD------VYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR--D 306
              D +   T D        Y    PL +             G ++    G+ +A R   
Sbjct: 127 LRPDDVYWCTADPGWVTGTSYGIIAPLLN-------------GVTLVVDEGEFDAERWYG 173

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
            L E K T+    P                LR L R   +   +Y L             
Sbjct: 174 ILEEEKVTVWYTAPTA--------------LRMLMRAGPELAARYDL------------- 206

Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426
                             LR + S G PL+ EV  +        +   +  TET      
Sbjct: 207 ----------------SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIA 250

Query: 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRG--KTLFSGYYKNP 483
            +P      G+ G      E  + E    G +P+  P   GE+ ++    ++F GY  N 
Sbjct: 251 NYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNE 310

Query: 484 DLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           +    S +DGW+ TGD+     +G    + R  ++IK +
Sbjct: 311 ERYASSFVDGWYLTGDLAYRDEDGYFWFVGRADDVIKTA 349

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 53.6 bits (129), Expect = 3e-07
 Identities = 68/324 (20%), Positives = 111/324 (34%), Gaps = 79/324 (24%)

Query: 218  QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
               N+  ++YTSG++G PKGV + H  +A  +  +         ++  +D  L F+  + 
Sbjct: 3235 MGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWI-----AEAYELDANDRVLLFMSFS- 3288

Query: 278  ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              D   E +                           TL+ G   V   + +      EEL
Sbjct: 3289 -FDGAQERFL-------------------------WTLICGGCLV---VRDNDLWDPEEL 3319

Query: 338  RPL--RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 395
                   RI  A +                + L                L + + GG  +
Sbjct: 3320 WQAIHAHRISIACFP--------------PAYLQQFAEDAGGAD--CASLDIYVFGGEAV 3363

Query: 396  ST-EVEEFLRVTCCAFLVQGYGLTET--------CGPTTVCFPDEMCMVGTAGPVSVYS- 445
                 E+  R      L  GYG TE         CG   VC      +       S+Y  
Sbjct: 3364 PPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVL 3423

Query: 446  ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--------T 497
            + +L  VP +G +       GE+ + G  L  GY++ P LT E  +   F         T
Sbjct: 3424 DGQLNPVP-VGVA-------GELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRT 3475

Query: 498  GDIGQILPNGVVKIIDRKKNLIKI 521
            GD+ +   +GV++ + R  + +KI
Sbjct: 3476 GDLARYRADGVIEYLGRIDHQVKI 3499

Length = 3956

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 23/158 (14%)

Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTC-----CAFLVQGYGLTETCGPTTVCFP------D 430
           G LR+ ++GG P+  +  E F                 YGL E+    TV  P      D
Sbjct: 272 GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVD 331

Query: 431 EMCMVGTAGP--VSVYSE----LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           E+     +G    +V       + +   P  G + +     GE+ +RG ++ SGY     
Sbjct: 332 EVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAP 391

Query: 485 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           +      D WF TGD+G ++  G+V +  R K LI ++
Sbjct: 392 IDP----DDWFPTGDLGYLVDGGLV-VCGRAKELITVA 424

Length = 525

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 31/164 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V ++ + LR  G   G R+ +   N    V    AC  +  I VPL      
Sbjct: 24  TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPL------ 77

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
              N+ L  +E+D   +QD + + LL  D  +A R   +    +  A     A++    P
Sbjct: 78  ---NWRLSASELD-ALLQDAEPRLLLGDDAVAAGRT-DVEDLAAFIASAD--ALEPADTP 130

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
                            +PP+  ++  I++TSGTSG PKGV+L+
Sbjct: 131 S----------------IPPERVSL--ILFTSGTSGQPKGVMLS 156

Length = 488

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 19/102 (18%)

Query: 466 GEVCVRGKTLFSGYYKNP-----------------DLTRESIIDGWFHTGDIGQILPNGV 508
           GE+ VRG  + + YY +P                 D       DGW  TGD+G +  +G 
Sbjct: 386 GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGF 445

Query: 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAP-IIEDVSISY 549
           + I DR +++I+ S GE++    LEN    AP ++E   I Y
Sbjct: 446 LTIHDRARDVIR-SGGEWIYSAQLENYIMAAPEVVECAVIGY 486

Length = 576

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 51.8 bits (125), Expect = 6e-07
 Identities = 48/182 (26%), Positives = 67/182 (36%), Gaps = 48/182 (26%)

Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG---------YGLTETC----------G 422
              R+  +G  P+  + +E F       F   G         YGL E            G
Sbjct: 270 SSWRVAFNGAEPVRADTLERFAE----RFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAG 325

Query: 423 PTTVCFPDEMCMVGTAGP-----------VSVYSELRLEEV----PEMGYSPLDDPPCGE 467
           P  +    +    G A             VS    L   EV    PE    PL D   GE
Sbjct: 326 PVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVDPE-TRRPLPDGEVGE 384

Query: 468 VCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
           + VRG ++ +GY+  P+ T E+          GW  TGD+G  L +G + +  R K+LI 
Sbjct: 385 IWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG-FLHDGELYVTGRLKDLII 443

Query: 521 IS 522
           I 
Sbjct: 444 IR 445

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 51.6 bits (124), Expect = 7e-07
 Identities = 52/212 (24%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   +  + LR  G   G RV ++  NCPQ+         L  + VP+      
Sbjct: 60  TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------TAEQKEM 189
             +++ L+ A  + +   D+     +    R+   LR  V  TSL        T    + 
Sbjct: 120 HELSYELNDAGAEVLLALDQLAP--VVEQVRAETSLR-HVIVTSLADVLPAEPTLPLPDS 176

Query: 190 AVQTGIKPYSWDEFL-HLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHE---- 243
                +      + L  L        LP P    +  + YT GT+G PKG   T      
Sbjct: 177 LRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVY 236

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
           T A     V +   +       D V+LSFLP 
Sbjct: 237 TAAAAY-AVAVVGGE-------DSVFLSFLPE 260

Length = 567

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 51.9 bits (124), Expect = 8e-07
 Identities = 66/314 (21%), Positives = 110/314 (35%), Gaps = 67/314 (21%)

Query: 219  PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            P N+  ++YTSG++G PKGV + H  ++  +  +          + V D  L F   +  
Sbjct: 3195 PENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYG-----LGVGDRVLQFTTFS-- 3247

Query: 279  LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
             D  +EE F     GA V         L        P LL  +                 
Sbjct: 3248 FDVFVEELFWPLMSGARV--------VLAGPEDWRDPALLVEL----------------- 3282

Query: 337  LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
               +     D L+ Y                        +  A     L+ ++ GG  L 
Sbjct: 3283 ---INSEGVDVLHAYPSMLQA---------------FLEEEDAHRCTSLKRIVCGGEALP 3324

Query: 397  TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL--RLEEVPE 454
             ++++  +V     L   YG TE     T+      C+      V +   +  R   + +
Sbjct: 3325 ADLQQ--QVFAGLPLYNLYGPTE----ATITVTHWQCVEEGKDAVPIGRPIANRACYILD 3378

Query: 455  MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF-------HTGDIGQILPNG 507
                P+     GE+ + G+ L  GY+  P LT E  +   F        TGD+ +   +G
Sbjct: 3379 GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADG 3438

Query: 508  VVKIIDRKKNLIKI 521
            V++ I R  + +KI
Sbjct: 3439 VIEYIGRVDHQVKI 3452

Length = 5163

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 51.6 bits (124), Expect = 8e-07
 Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 35/168 (20%)

Query: 384 RLRLVISGGAPLSTEVEEF------LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437
           RLR V++G   L    ++       LR+      ++GYG+TE C P            GT
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRI------LEGYGVTE-CAPVVSINVPMAAKPGT 532

Query: 438 AGPVSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIID- 492
            G +    + RL  VP  E G         G + ++G  + +GY +   P +      + 
Sbjct: 533 VGRILPGMDARLLSVPGIEQG---------GRLQLKGPNIMNGYLRVEKPGVLEVPTAEN 583

Query: 493 -------GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
                  GW+ TGDI +    G V+I  R K   KI+ GE V+LE +E
Sbjct: 584 ARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIA-GEMVSLEMVE 630

Length = 718

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDG-----WFHTGDIGQILPNGVVKIIDRKKNLIK 520
           GE+ + G  +  GY+ +P+LT E  I        + TGD+G+  P+G ++ + R  + +K
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVK 386

Query: 521 IS 522
           I 
Sbjct: 387 IR 388

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 57/171 (33%), Positives = 79/171 (46%), Gaps = 29/171 (16%)

Query: 227 YTSGTSGDPKGVVLTHETIATFVSG-VD-----LFLDQFEDKMTVDDVYLSFLPLAHI-- 278
           Y+SGT+G PKGV+LTH+ + T V+  VD     L+          DDV L  LP+ HI  
Sbjct: 186 YSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY-------FHSDDVILCVLPMFHIYS 238

Query: 279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRV---FEKIHEGIKKAL 334
           L+ V+     R GA++      ++ AL + +   K T+   VP +     K     K  L
Sbjct: 239 LNSVLLCG-LRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDL 297

Query: 335 EELR-------PLRRRIFDALY-KYKLAWMNMGYKQREASP-LADLLAFRK 376
             +R       PL + + DA   K   A +  GY   EA P LA  LAF K
Sbjct: 298 SSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAK 348

Length = 537

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 40/188 (21%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           ++ E+  +V ++ +ALR  G +PG RV  Y  N P+ V AM A  ++  I   C P    
Sbjct: 88  SWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSP---D 144

Query: 135 LGPGAVNFILDHAE---------IDFVFVQDK------KVKELLS--PDCRSAQRLRVMV 177
            G  AV   LD            +D      K      K+ E++   P       L  +V
Sbjct: 145 FGVEAV---LDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS------LEAVV 195

Query: 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--PPQPFN-ICTIMYTSGTSGD 234
               L++       Q     +S    L     +    L     PF+    I+Y+SGT+G 
Sbjct: 196 VVPYLSS-----DAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGL 250

Query: 235 PKGVVLTH 242
           PK +V   
Sbjct: 251 PKCIVHGA 258

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 31/177 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY++      Q+  AL A G EPG RVG    N  + +EA    +    +C  +   L P
Sbjct: 41  TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFP 100

Query: 138 GAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM--- 189
             + +I++HAE      D  F+    + + L+P C + +    M     L A    +   
Sbjct: 101 EQIAYIVNHAEDRYVLFDLTFL---PLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCY 157

Query: 190 ----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
                 Q G   Y W  F      +E      Q  ++C   YTSGT+G+PKG + +H
Sbjct: 158 ETLVGAQDG--DYDWPRF------DEN-----QASSLC---YTSGTTGNPKGALYSH 198

Length = 539

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 19/210 (9%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA---MEACNALSLICVPLYDT 134
           T+ + Y+   ++ SAL      PG  V +   N P   EA   +    A+ + CV +   
Sbjct: 47  TWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAV-VNCVNI--R 103

Query: 135 LGPGAVNFILDHAEIDFVFVQDK------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKE 188
           L    + F+L+H++ + V V  +      +  ++L+   +S+ +  +++     T + K 
Sbjct: 104 LNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKS 163

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIAT 247
           +    G     +++FL  G   E    PP   +    + YTSGT+  PKGVVL H     
Sbjct: 164 LQYALGKGAIEYEKFLETGD-PEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYL 222

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                 L        M    VYL  LP+ H
Sbjct: 223 MALSNALIWG-----MNEGAVYLWTLPMFH 247

Length = 567

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 9/143 (6%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSV 443
           LR VI   AP   +V+  +       + + YG TE+ G  T    ++ +   GT G  + 
Sbjct: 273 LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTES-GAVTFATSEDALSHPGTVGKAAP 331

Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
            +ELR   V E G  PL     GE+  R  G   F+ Y+  P+   E    G+  +GD+G
Sbjct: 332 GAELRF--VDEDG-RPLPQGEIGEIYSRIAGNPDFT-YHNKPEKRAEIDRGGFITSGDVG 387

Query: 502 QILPNGVVKIIDRKKNLIKISQG 524
            +  +G + + DRK++++ IS G
Sbjct: 388 YLDADGYLFLCDRKRDMV-ISGG 409

Length = 509

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 23/175 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+Y+EV ++   LR  G   G RV IY    P+ V AM AC  +  I   ++     
Sbjct: 75  TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFAS 134

Query: 138 GAVNFILDHAE------IDFVFVQDKKV--KELLSPDCRSAQR--LRVMVCFTSLTAEQK 187
             +   +D A+        F     + V  K LL      +Q    +V++    L   Q 
Sbjct: 135 KELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPHKVLI----LNRGQV 190

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVV 239
              ++ G +   W E +      +   +   P    +   I+YTSGT+G PKGVV
Sbjct: 191 PAPLKPG-RDLDWAELMA-----KARPVDCVPVESTDPLYILYTSGTTGKPKGVV 239

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 72/344 (20%), Positives = 107/344 (31%), Gaps = 86/344 (25%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD---- 280
           I++TSG++G PKGVV TH    TF + +D     +   +   D  L+  P   +      
Sbjct: 90  ILFTSGSTGPPKGVVYTHR---TFAAQIDALRSLYG--IREGDRDLAAFPPFALFGPALG 144

Query: 281 --RVIEEYFFRRGASV--GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
              VI        A++        +  +    +   P LL  V R  E+        L  
Sbjct: 145 VTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVARYCEE----NGIQLPS 200

Query: 337 LR-----------PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 385
           LR            L RR    L           Y   EA P+A +              
Sbjct: 201 LRRVLSAGAPVPPDLLRRFVANLMPEAEIHTP--YGATEALPVASI------------EG 246

Query: 386 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS 445
           R V++     S E  E     C    V G               D   +    GP++ + 
Sbjct: 247 REVLAE----SAEPPEAGAGVCVGHPVPGI--------------DVRIIPIDDGPIASWD 288

Query: 446 ---ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTG 498
              EL   EV             GE+ V G  +   YY  P+ T+ + I      W   G
Sbjct: 289 DDIELPPGEV-------------GEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMG 335

Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEY------VALEYLENVY 536
           D+G     G +    RK + ++ + G                V 
Sbjct: 336 DLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGVR 379

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 48.4 bits (116), Expect = 6e-06
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 9/64 (14%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV--DDVYLSFL 273
             +P +   I++TSG+ G PKGVVL+H  +   +       DQ    + +  +DV L  L
Sbjct: 141 GAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANI-------DQIAAVIDLNTEDVLLGAL 193

Query: 274 PLAH 277
           PL H
Sbjct: 194 PLFH 197

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 19/204 (9%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+ EE+ +  +   + G   G +V ++  NCP+++        +  I VP+   L  
Sbjct: 39  SYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLR 98

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               +IL +++   +    +            A  LR  +C T +     +         
Sbjct: 99  EESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLR-HICLTRVALPADDGVS------ 151

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            S+ +             P    +   I++TSGT+  PKGVV+TH  +         F  
Sbjct: 152 -SFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNL--------RFAG 202

Query: 258 QFED---KMTVDDVYLSFLPLAHI 278
            +      +  DDVYL+ +P  HI
Sbjct: 203 YYSAWQCALRDDDVYLTVMPAFHI 226

Length = 517

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 48.8 bits (117), Expect = 6e-06
 Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 35/206 (16%)

Query: 79  YKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG 138
           Y+ +          L A G +PG RV +       +VEA  AC    L+ VPL     P 
Sbjct: 52  YQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPL-----PL 106

Query: 139 AVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA-----VQT 193
            + F    + I        +++ +L+    SAQ        T    E             
Sbjct: 107 PMGFGGRESYIA-------QLRGMLA----SAQ---PAAIITP--DELLPWVNEATHGNP 150

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
            +   S   F       ++ +  P P +I  + Y+SG++  P+GV++TH  +   +  + 
Sbjct: 151 LLHVLSHAWF-KALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAIS 209

Query: 254 LFLDQFEDKMTV--DDVYLSFLPLAH 277
                  D + V   D  +S+LP  H
Sbjct: 210 H------DGLKVRPGDRCVSWLPFYH 229

Length = 579

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 42/169 (24%), Positives = 61/169 (36%), Gaps = 36/169 (21%)

Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
             DL  +         RLR  +S G PL+ EV E ++      +  GYG TET       
Sbjct: 191 QQDLAQYDV-------RLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTET------- 236

Query: 428 FPDEMCMVGT--AGPVSVYSELRLEEVPEMGY-----SPLDDPPC---GEVCV----RGK 473
                 M+G      V   S  R    P  GY                GE+ +    R  
Sbjct: 237 ----TAMIGNSPGQKVKPGSMGR----PLPGYRVVLLDDEGKEIPVTEGEIALDLGDRPI 288

Query: 474 TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
            L  GY  +P+ T  +   G++ TGD      +G +  + R  ++ K S
Sbjct: 289 GLMLGYMGDPEKTAAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSS 337

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.4 bits (116), Expect = 7e-06
 Identities = 51/204 (25%), Positives = 74/204 (36%), Gaps = 22/204 (10%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++   LRA G   G  V I   N P++ E   A     L   P       
Sbjct: 13  TYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTP------- 65

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +N+ L  AEI ++ V D   K L+ S           +            + V   + 
Sbjct: 66  --INWHLTAAEIAYI-VDDSGAKVLIVSAALADT--AAELAAELPAGVPL-LLVVAGPVP 119

Query: 197 PY-SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV--LTHETIATFVSGVD 253
            + S++E L       +            ++Y+SGT+G PKG+   L          G+ 
Sbjct: 120 GFRSYEEALAAQPDTPIADETAG----ADMLYSSGTTGRPKGIKRPLPGLDPDE-APGMM 174

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAH 277
           L L  F      D VYLS  PL H
Sbjct: 175 LALLGFGMYGGPDSVYLSPAPLYH 198

Length = 502

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 31/112 (27%), Positives = 43/112 (38%), Gaps = 14/112 (12%)

Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP----VSVYSELRLEEVP-- 453
            EF R   C  +  GYG +E          +     G+ G     V++Y+   L E    
Sbjct: 281 AEFSRRFGCQ-VEDGYGSSEGAVIVV---REPGTPPGSIGRGAPGVAIYNPETLTECAVA 336

Query: 454 ---EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
                G     D   GE V   G   F GYY NP+ T E +  G + +GD+ 
Sbjct: 337 RFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLA 388

Length = 540

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 69/327 (21%), Positives = 115/327 (35%), Gaps = 75/327 (22%)

Query: 214  ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
             +   P N+  ++YTSG++G PKG    H  +   V+ +    + ++  ++  DV L F 
Sbjct: 1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGAL---VNRLCATQEAYQ--LSAADVVLQFT 1766

Query: 274  PLAHILDRVIEEYFFR--RGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
              A   D  + E F+    GA +       H D   L   +   + T L  VP + +++ 
Sbjct: 1767 SFA--FDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLL 1824

Query: 328  EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 387
            + + + +E    LRR +                   EA  +    A R    RL      
Sbjct: 1825 Q-MDEQVEHPLSLRRVVCGG----------------EALEVE---ALRPWLERLPDT--- 1861

Query: 388  VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC-----GPTTVCFPDEMCMVGTAGPVS 442
                                   L   YG TET              +    V    P++
Sbjct: 1862 ----------------------GLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIA 1899

Query: 443  VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF------- 495
              S   L+       +P+     GE+ + G  L  GY   P LT E  +   F       
Sbjct: 1900 NLSTYILDA----SLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRL 1955

Query: 496  -HTGDIGQILPNGVVKIIDRKKNLIKI 521
              TGD+ +   +GV++ + R  + +KI
Sbjct: 1956 YRTGDLARYRADGVIEYLGRIDHQVKI 1982

Length = 3956

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 11/116 (9%)

Query: 392 GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EMCMVGTAGPVSVYSELRL 449
           GAP   ++  F R   C  +V G+G TE  G      PD     +      V++      
Sbjct: 277 GAP--GDIARFARRFGCV-VVDGFGSTEG-GVAITRTPDTPPGALGPLPPGVAIVDPDTG 332

Query: 450 EEVP----EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 500
            E P      G     D   GE V   G   F GYY +P+   E +  G + +GD+
Sbjct: 333 TECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDL 388

Length = 529

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 46/152 (30%), Positives = 65/152 (42%), Gaps = 11/152 (7%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP--DEMCMVGTAGPVS 442
           LRLV  GG+        F+  T      Q YGL+ET G T +C P  D   +   AG V 
Sbjct: 288 LRLVGYGGSRAIAADVRFIEATGVR-TAQVYGLSET-GCTALCLPTDDGSIVKIEAGAVG 345

Query: 443 -VYSELRLEEVPEMGYSPL-----DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH 496
             Y  + +      G  P           G + ++      GY+ NP+ T E +IDGW +
Sbjct: 346 RPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVN 405

Query: 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
           TGD+ +   +G   I  R   +I I  G  +A
Sbjct: 406 TGDLLERREDGFFYIKGRSSEMI-ICGGVNIA 436

Length = 540

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 23/71 (32%), Positives = 35/71 (49%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+++   +  + LRA G  PG RV +   + P+ V A  AC     + V L   L P
Sbjct: 12  TYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTP 71

Query: 138 GAVNFILDHAE 148
             +  ILD + 
Sbjct: 72  QDLEHILDDSG 82

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 44.9 bits (107), Expect = 8e-05
 Identities = 104/496 (20%), Positives = 160/496 (32%), Gaps = 147/496 (29%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E+   +   L A G   G  V +   N   +V A+ A   +    + L      
Sbjct: 76  TYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSG 135

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +  +     +    V D +  +LLS       RLR                       
Sbjct: 136 PQLAEVAAREGVK-ALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGS--------- 185

Query: 198 YSWDEFLHLGKVNEMEILP--PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            + +    L   +    LP  P+P  I  ++ TSGT+G PKG      +           
Sbjct: 186 -TDETLDDLIAGSSTAPLPKPPKPGGI--VILTSGTTGTPKGAPRPEPS----------- 231

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASV----------GYYHGDLNALR 305
                             PLA +L RV     FR G +           G+ H  L    
Sbjct: 232 ---------------PLAPLAGLLSRVP----FRAGETTLLPAPMFHATGWAHLTLA--- 269

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA------LYKYKLAWMNMG 359
              M L  T+      V                   RR FD       + K+K   +   
Sbjct: 270 ---MALGSTV------VL------------------RRRFDPEATLEDIAKHKATAL--- 299

Query: 360 YKQREASP-----LADLLAFRKVKARLG-GRLRLVISGGAPLSTEV-----EEFLRVTCC 408
                  P     + DL    +V A+     L+++   G+ LS E+     E F  V   
Sbjct: 300 ----VVVPVMLSRILDLGP--EVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLY- 352

Query: 409 AFLVQGYGLTETCGPTTVCFPDEMCMV-GTAGPVSVYSELRLEEVPEMGYSPLDD----- 462
                 YG TE     T+  P+++    GT G       +++          LD+     
Sbjct: 353 ----NLYGSTE-VAFATIATPEDLAEAPGTVGRPPKGVTVKI----------LDENGNEV 397

Query: 463 PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
           P    G + V     F GY    D   + IIDG   +GD+G    +G++ +  R  ++I 
Sbjct: 398 PRGVVGRIFVGNGFPFEGYTDGRD---KQIIDGLLSSGDVGYFDEDGLLFVDGRDDDMI- 453

Query: 521 ISQGEYVALEYLENVY 536
           +S G        ENV+
Sbjct: 454 VSGG--------ENVF 461

Length = 549

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 44.8 bits (107), Expect = 9e-05
 Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 39/187 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           ++ E+  +V  + +ALRA G  PG RV  Y  N P+ V AM A  +L  I   C P +  
Sbjct: 116 SWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDF-- 173

Query: 135 LGPGAVNFILDH-AEI--------DFVFVQDK------KVKELLS--PDCRSAQRLRVMV 177
            G   V   LD   +I        D      K      KV EL +  P   S + + V+V
Sbjct: 174 -GVQGV---LDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP---SLEHV-VVV 225

Query: 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFN--ICTIMYTSGTSGDP 235
            +          A         W++FL   +  E+E   P PF+  +  I+Y+SGT+G P
Sbjct: 226 PYL-----GPAAAAAALPGALLWEDFLAPAEAAELEFE-PVPFDHPLW-ILYSSGTTGLP 278

Query: 236 KGVVLTH 242
           K +V  H
Sbjct: 279 KCIVHGH 285

Length = 655

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E ++ +LQ    L A G   G  V +   N   ++E   A + L  + +P+   L  
Sbjct: 29  SYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAA 88

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             V +IL  A    + V ++                     F ++ A +    V      
Sbjct: 89  DEVAYILGDAGAKLLLVDEE---------------------FDAIVALETPKIV-IDAAA 126

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246
            +    L  G +         P ++  +MYTSGT+  PKGV+ ++  + 
Sbjct: 127 QADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLH 175

Length = 497

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
             +P +  TI+++SG+ G+PKGV+L+H  I + +  +          +  DDV LS LP 
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILSSLPF 832

Query: 276 AH 277
            H
Sbjct: 833 FH 834

Length = 1146

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 7/79 (8%)

Query: 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259
           W + L   +  E       P ++  +++TSGTSGDPK V  TH  +A   +GV L   +F
Sbjct: 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVA--SAGVML-AQRF 188

Query: 260 EDKMTVDDV-YLSFLPLAH 277
              +  DDV Y+S +PL H
Sbjct: 189 G--LGPDDVCYVS-MPLFH 204

Length = 529

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 52/191 (27%), Positives = 70/191 (36%), Gaps = 21/191 (10%)

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET--C 421
           A PL D  A           L  + SGGA  S  V E  L +     L    G +ET   
Sbjct: 280 ARPLLD--ALEARGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFG 337

Query: 422 GPTTVCF--PDEMCMVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           G  TV            T GP   V  E      P            G +  RG  +  G
Sbjct: 338 GSGTVAKGAVHTGGPRFTIGPRTVVLDEDGNPVEP-------GSGEIGWIARRGH-IPLG 389

Query: 479 YYKNPDLTRES--IIDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
           YYK+P+ T E+   IDG  +   GD  ++  +G + ++ R    I  + GE V  E +E 
Sbjct: 390 YYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEE 448

Query: 535 VYCVAPIIEDV 545
                P + D 
Sbjct: 449 ALKAHPDVADA 459

Length = 533

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
            +  QP +   I++TSG+ G PKGVV +H+++   V  +    D      T +D ++S L
Sbjct: 359 QVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIAD-----FTPNDRFMSAL 413

Query: 274 PLAH 277
           PL H
Sbjct: 414 PLFH 417

Length = 718

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 48/208 (23%), Positives = 73/208 (35%), Gaps = 30/208 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+ E   ++    R+ G + G  V I+  N  +++E   A     L    +   L P
Sbjct: 26  TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTP 85

Query: 138 GAVNFILDH--AEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
               +I+D   A           V   L   C    R R+++                G 
Sbjct: 86  AEAAYIVDDSGARALITSAAKLDVARALLKQC-PGVRHRLVL---------DGDGELEGF 135

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN---ICTIM-YTSGTSGDPKGVV--LTHETIATFV 249
             Y+            +  LP  P     + T M Y+SGT+G PKG+   L  +   T +
Sbjct: 136 VGYA----------EAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPL 185

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                    +      D VYLS  PL H
Sbjct: 186 PLTAFLQRLW--GFRSDMVYLSPAPLYH 211

Length = 511

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 114/540 (21%), Positives = 180/540 (33%), Gaps = 144/540 (26%)

Query: 19  PSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKT 78
           P   P +   L    +P     LN A ++    V    GNR          +     W T
Sbjct: 14  PEQWPEFTFDLPQFQYPER---LNCAAELLDRHVHNGRGNR-------PCFRTFEETW-T 62

Query: 79  YKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           Y+++ +   +I   L    G  PG RV +  AN P  V    A      I V     L  
Sbjct: 63  YQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKAGAIVVTTMPLLRA 122

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +  I+D A I                           +C   LTA             
Sbjct: 123 KELTTIVDKARITHA------------------------LCDKRLTAAD----------- 147

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                                  ++  I +TSGT+G PKG +  H  I   ++  D F  
Sbjct: 148 -----------------------DVALIGFTSGTTGLPKGTMHFHRDI---LAICDAF-P 180

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY--YHGDLNALRDDLMELKPTL 315
           +   + T DDV++   PLA         + F  G  V +    G    L           
Sbjct: 181 RHVLQPTPDDVFIGSPPLA---------FTFGLGGLVLFPLRFGASAVL----------- 220

Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                             LE+  P    +  A+ +++   +         +P A      
Sbjct: 221 ------------------LEQATP--PLLLKAIQEHRATILF-------TAPTAYRAMLI 253

Query: 376 KVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM 434
           KVKA     LR  +S G  L  +V +++   T    ++ G G TE      +   +E   
Sbjct: 254 KVKAFDISSLRKCVSAGETLPAKVWQDWYERTGLK-IIDGIGATEML-HIFISANEENAK 311

Query: 435 VGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
            G  G PV  Y    +++      + +     G + VRG T     Y + +  +E + DG
Sbjct: 312 PGATGKPVPGYEARIVDD----QGNEVPRGEAGRLAVRGPT--GCRYLDDERQQEYVRDG 365

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSVS 553
           W  TGDI +   +G    + R  ++I +S G  +A          AP +ED  +++  V+
Sbjct: 366 WNVTGDIFRQDEDGYFHYVARSDDMI-VSAGYNIA----------APEVEDALLTHPDVA 414

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 22/173 (12%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET--CGPTTVCFPDEMCMVGTA-- 438
            LR + S GA  S EV +  L +     LV   G +ET   G +            T   
Sbjct: 136 SLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRAGGA---SATGKF 192

Query: 439 --GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG- 493
             GP +V  +    EVP            G +   G+    GYYK+P+ T ++   IDG 
Sbjct: 193 ELGPDTVVLDEDGSEVPP------GSGEVGWIARGGRVPL-GYYKDPEKTAKTFREIDGV 245

Query: 494 -WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDV 545
            +   GD  ++  +G + ++ R    I  + GE V  E +E      P + D 
Sbjct: 246 RYAVPGDFARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEEALKAHPDVADA 297

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 33/71 (46%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+ E   Q+ + LRA G  PG RVG+        V A+ A        VPL  +   
Sbjct: 14  SYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVPLDPSYPA 73

Query: 138 GAVNFILDHAE 148
             + ++L+ AE
Sbjct: 74  ERLQYMLEDAE 84

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 47/209 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
              V  T++++   + Q+ +     G   G  V + G N P+ + A  A        +PL
Sbjct: 25  NDEVL-TWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPL 83

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
              L    +  +L    +DF  V        L  +            F++LT+       
Sbjct: 84  NPQLPQPLLEELLPSLTLDFALV--------LEGENT----------FSALTS------- 118

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS- 250
                       LHL  V     +  QP  + T+  TSG++G PK  V T +  A   S 
Sbjct: 119 ------------LHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQ--AHLASA 164

Query: 251 -GVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            GV L L  F    T  D +L  LPL H+
Sbjct: 165 EGV-LSLMPF----TAQDSWLLSLPLFHV 188

Length = 458

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 20/159 (12%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTC---CAFLVQGYGLTETCGPTTVCF-----PDEMCMVG 436
           L+L+  GGA LS  +    R+     C  L Q +G+ E      V +      DE     
Sbjct: 302 LKLLQVGGARLSETLAR--RIPAELGCQ-LQQVFGMAEG----LVNYTRLDDSDERIFTT 354

Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF 495
              P+S   E+    V +   +PL     G +  RG   F GYYK+P     +   +G++
Sbjct: 355 QGRPMSPDDEVW---VADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFY 411

Query: 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
            +GD+  I P+G + ++ R+K+ I    GE +A E +EN
Sbjct: 412 CSGDLVSIDPDGYITVVGREKDQIN-RGGEKIAAEEIEN 449

Length = 536

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 31/179 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY++++ EV    SALRA G   G RV IY     + V AM AC  +  I   ++     
Sbjct: 85  TYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFAS 144

Query: 138 GAVNFILDHAEIDFVFVQDK-----KV---KELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189
            ++   +D A    +   D      KV   K LL      AQ     V           +
Sbjct: 145 HSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHV-----------L 193

Query: 190 AVQTGIKP----------YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
            V  G+ P          Y+     H      +E L  +      I+YTSGT+G PKGV
Sbjct: 194 LVDRGLAPMRLIPGRDVDYAALRTQHEDAQVPVEWL--ESNEPSYILYTSGTTGKPKGV 250

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 43/158 (27%), Positives = 56/158 (35%), Gaps = 60/158 (37%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQG------YGLTETCGPTTVCFPDEM------ 432
           LR VIS GAP+   V E  R    A L         YG TE   P +     E+      
Sbjct: 290 LRRVISAGAPVPIAVIERFR----AMLPPDAEILTPYGATE-ALPISSIESREILFATRA 344

Query: 433 --------CMVG-------------TAGPVSVYSE-LRLE--EVPEMGYSPLDDPPCGEV 468
                   C VG             +  P+  + + LRL   E+             GE+
Sbjct: 345 ATDNGAGIC-VGRPVDGVEVRIIAISDAPIPEWDDALRLATGEI-------------GEI 390

Query: 469 CVRGKTLFSGYYKNPDLTRES-IIDG----WFHTGDIG 501
            V G  +   YY  P+ TR + I DG    W   GD+G
Sbjct: 391 VVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLG 428

Length = 552

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 25/203 (12%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V  + + L A G  P  RV +   N    V A+ A + L  +         P
Sbjct: 30  TYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAV---------P 80

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +N  L  AEI  +  + +    +++ D +    +        + A      V  G  P
Sbjct: 81  ALMNPRLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGSGVRVLALGDL--VGLGE-P 137

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL- 256
            S    +        E  P +P     + YTSGT+G PKG V+      + V    LF+ 
Sbjct: 138 ESAGPPI--------EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRV----LFMS 185

Query: 257 DQFEDKMTVDDVYLSFLPLAHIL 279
            Q   +    +V L  +PL H++
Sbjct: 186 TQAGLRHGRHNVVLGLMPLYHVI 208

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 25/173 (14%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           +++ E+ +   +    L A G  PG  V +   N   + EA  A   L    VP      
Sbjct: 12  RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVP------ 65

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQ-KEMAVQTG 194
              VN+     EI ++  +D   + L++  D        +    T L+     E+A    
Sbjct: 66  ---VNWHFKPEEIAYIL-EDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYR 121

Query: 195 IKPYS---------WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           I P           W+ +L   +  +   +P QP ++   +YTSGT+G PKGV
Sbjct: 122 ISPALLTPPAGAIDWEGWLAQQEPYDGPPVP-QPQSM---IYTSGTTGHPKGV 170

Length = 509

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 24/177 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           T+ E+  +V  + +ALRA G  PG RV  Y  N PQ V AM A  ++  I   C P +  
Sbjct: 116 TWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDF-- 173

Query: 135 LGPGAVNFILD---HAEIDFVFVQD--------KKVKELLSPDCRSAQRLRVMVCFTSLT 183
                   +LD     E   +F  D           ++ ++   +    LR +V    L 
Sbjct: 174 ----GARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLG 229

Query: 184 AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF-NICTIMYTSGTSGDPKGVV 239
             + E     G      ++F    +  E+      PF +   I+++SGT+G PK +V
Sbjct: 230 PRETEAPKIDG--ALDLEDFTAAAQAAELV-FEQLPFDHPLWILFSSGTTGLPKCIV 283

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 46/172 (26%)

Query: 385 LRLVISGGAPLS-TEVEEF--------LRVTCCAFLVQGYGLTET--------CG-PTTV 426
           LR  ++G  P+   +VE+         LR      ++  YG+ E         CG    V
Sbjct: 278 LRFALNGAEPIDPADVEDLLDAGARFGLRPEA---ILPAYGMAEATLAVSFSPCGAGLVV 334

Query: 427 CF--PDEMCMVGTAGPVSV------------YSELRLEEVPEMGYSPLDDPPCGEVCVRG 472
                D +  +  A P +                L +  V E G   L     G + +RG
Sbjct: 335 DEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDG-QVLPPRGVGVIELRG 393

Query: 473 KTLFSGYYKNPDLTRESII-----DGWFHTGDIGQILPNGVVKIIDRKKNLI 519
           +++  GY     LT +  I     DGW  TGD+G +   G V +  R K++I
Sbjct: 394 ESVTPGY-----LTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVI 440

Length = 545

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 33/173 (19%)

Query: 383 GRLRLVISGGAP-----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437
            + R ++ GGAP     L    +  LR+         YG+TET        PD+      
Sbjct: 230 AQFRTILLGGAPAWPSLLEQARQLQLRLAPT------YGMTETASQIATLKPDDF----L 279

Query: 438 AGPVSVYSEL---RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 494
           AG  S    L   ++          +     G + ++ ++L  GYY  P +  +S   G 
Sbjct: 280 AGNNSSGQVLPHAQIT---------IPANQTGNITIQAQSLALGYY--PQI-LDS--QGI 325

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           F T D+G +   G + I+ R    I I+ GE V    +E       +++DV +
Sbjct: 326 FETDDLGYLDAQGYLHILGRNSQKI-ITGGENVYPAEVEAAILATGLVQDVCV 377

Length = 452

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 41/174 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ E+V+ + + LR  G +PG  V +     P+ V        L+L    L+  +  
Sbjct: 485 SYREMREQVVALANLLRERGVKPGDSVAV---ALPRSVF-------LTLA---LHAIVEA 531

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM------VCFTSLTAEQKEMAV 191
           GA    LD                   PD     RL++M          +   +    A 
Sbjct: 532 GAAWLPLDTGY----------------PD----DRLKMMLEDARPSLLITTADQLPRFAD 571

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 245
              +    ++  L       +     QP +   I++TSG++G PKGV++    I
Sbjct: 572 VPDLTSLCYNAPLAPQGAAPL--QLSQPHHTAYIIFTSGSTGRPKGVMVGQTAI 623

Length = 1296

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 18/64 (28%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS------------- 271
           ++YTSG++G PKGV ++H  +  F+  +          +   D  L+             
Sbjct: 98  VIYTSGSTGKPKGVEVSHRALVNFLLSM-----ARRPGLGASDRLLAVTTISFDISVLEL 152

Query: 272 FLPL 275
            LPL
Sbjct: 153 LLPL 156

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY+E+Y EV +  + L++ G + G RV IY    P+   AM AC
Sbjct: 80  TYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLAC 123

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 525
           G V V+    F GY     L RE   DGW    D+G     G + I+ R+KN+I +  G 
Sbjct: 334 GTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMI-LFGGI 392

Query: 526 YVALEYLENVYCVAPIIEDVSI 547
            +  E +E+V    P ++++ +
Sbjct: 393 NIFPEEIESVLHEHPAVDEIVV 414

Length = 487

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 39/209 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++      I +AL+A  A  G R  +   + P +V A   C    +I VP Y    P
Sbjct: 42  SYRDLDLRARTIAAALQAR-ASFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYP---P 97

Query: 138 GAVN--------FILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189
            +           I+  AE   +         LL  +  +A     ++C  +L     E 
Sbjct: 98  ESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEELAAANAPELLCVDTLDPALAE- 156

Query: 190 AVQTGIKPYSWDEFLHLGKVNEMEILPP-QPFNICTIMYTSGTSGDPKGVVLTHETIATF 248
                    +W E             P  QP +I  + YTSG++  PKGV ++H      
Sbjct: 157 ---------AWQE-------------PALQPDDIAFLQYTSGSTALPKGVQVSH---GNL 191

Query: 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
           V+   L    F   +  DDV +S+LPL H
Sbjct: 192 VANEQLIRHGFGIDLNPDDVIVSWLPLYH 220

Length = 4334

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY E+ E   ++ + L A G   G  V +YG   P    A+ AC
Sbjct: 18  TYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILAC 61

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            T+ E+ EE  +  + L+  G   G RV +     P+    +  C  L  + +P    LG
Sbjct: 1   WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
           P  + + L+ A    +                       ++ FTS T    +M + T
Sbjct: 61  PKDIRYRLERAGARAIVTSADDP---------------ALLYFTSGTTGLPKMVLHT 102

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 23/71 (32%), Positives = 34/71 (47%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ ++ +   ++ +ALR  G E G RVG+Y    P+   A  A   L  + VPL    GP
Sbjct: 8   TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67

Query: 138 GAVNFILDHAE 148
            AV   L  + 
Sbjct: 68  DAVEHRLRDSG 78

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 24/150 (16%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           LR+ I   AP   EV+  +       + + Y  +E  G T +   D +   G+ G  +V 
Sbjct: 264 LRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGK-AVL 322

Query: 445 SELRL-----EEVP--EMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GW 494
            E+R+      E+P  E+G  Y  +D  P           F  Y+ +P+ T  +    GW
Sbjct: 323 GEVRILDEDGNELPPGEIGTVYFEMDGYP-----------FE-YHNDPEKTAAARNPHGW 370

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
              GD+G +  +G + + DRK ++I IS G
Sbjct: 371 VTVGDVGYLDEDGYLYLTDRKSDMI-ISGG 399

Length = 502

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHE--TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
               +YTSGT+G PK  +++H     A  V G    L         DDV    LPL H
Sbjct: 83  PAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKP-------DDVLYLCLPLYH 133

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 35/163 (21%)

Query: 388 VISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           V+ GG P    V +      +     +V+ YG++ET G    C  D + + G        
Sbjct: 156 VLVGGGPAPAPVLDAAAAAGIN----VVRTYGMSETSGG---CVYDGVPLDGV------- 201

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504
             +R+E+              G + + G TL  GY +NP         GWF T D+G  L
Sbjct: 202 -RVRVED--------------GRIALGGPTLAKGY-RNPVDPDPFAEPGWFRTDDLG-AL 244

Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
            +GV+ ++ R  + I  + G  V  + +E      P + D ++
Sbjct: 245 DDGVLTVLGRADDAIS-TGGLTVLPQVVEAALATHPAVADCAV 286

Length = 358

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 16/170 (9%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           LR VI   AP   +V+  +       + + Y  TE  G T +  PD +   G+ G  SV 
Sbjct: 272 LRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGR-SVL 330

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCV----RGKTLFSGYYKNPDLTRESIIDG---WFHT 497
            +L + +         ++ P G +      R +  F  Y  +P+ T  +       W   
Sbjct: 331 GDLHICD------DDGNELPAGRIGTVYFERDRLPFR-YLNDPEKTAAAQHPAHPFWTTV 383

Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           GD+G +  +G + + DRK  +I IS G  +  +  EN   + P + DV++
Sbjct: 384 GDLGSVDEDGYLYLADRKSFMI-ISGGVNIYPQETENALTMHPAVHDVAV 432

Length = 501

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 54/199 (27%), Positives = 78/199 (39%), Gaps = 45/199 (22%)

Query: 93  LRASGA------EPGCRVGIYGANCPQWVE-------AMEACNALSLICVPLYDTLGPGA 139
            RA GA      +PG RV I     PQ ++       A+ A      I VPL+D   PG 
Sbjct: 65  NRAVGARLQQVTKPGDRVAIL---APQNLDYLIAFFGALYAGR----IAVPLFDPAEPGH 117

Query: 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199
           V  +  HA +D     D     +L+    SA+ +R    F +  A+++   +     P  
Sbjct: 118 VGRL--HAVLD-----DCTPSAILTTT-DSAEGVRKF--FRARPAKERPRVIAVDAVPDE 167

Query: 200 WDEFLHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
                    V    + P      I  + YTSG++  P GV +TH  + T V  V   L+ 
Sbjct: 168 ---------VGATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEG 218

Query: 259 FEDKMTVDDVYLSFLPLAH 277
            E    V     S+LP  H
Sbjct: 219 QEGDRGV-----SWLPFFH 232

Length = 631

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 43/179 (24%), Positives = 67/179 (37%), Gaps = 19/179 (10%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++   V  +   L  SG  PG RV +   +  ++V A+ A +   L+ VPL D   P
Sbjct: 45  SYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL-DPALP 103

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            A   +   A    V + D        P  R+    R      ++  +         +  
Sbjct: 104 IAEQRVRSQAAGARVVLIDA-----DGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSV-- 156

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI----CTIMYTSGTSGDPKGVVLTHETIATFVSGV 252
                  HL    E       P  +      IM+T GT+G PK V  TH  IA+ V  +
Sbjct: 157 -------HLDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAI 208

Length = 534

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 25/172 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
            Y E+     ++  AL   G  P   VG+      + V A+ A        VPL D   P
Sbjct: 538 DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPL-DPEYP 596

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                    AE     ++D  V+ LLS           +     L A  + + +    +P
Sbjct: 597 ---------AERLAYMLEDSGVQLLLSQ--------SHLGRKLPLAAGVQVLDLD---RP 636

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
            +W E    G   E       P N+  ++YTSG++G PKG    H  ++  +
Sbjct: 637 AAWLE----GYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRL 684

Length = 5163

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 10/147 (6%)

Query: 385  LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVS 442
            +R+ I+GG  L+ E ++   +          YG TET      C   E    G A  P+ 
Sbjct: 2450 VRMCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAASVPIG 2509

Query: 443  VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------DG--W 494
                 R+  + +   + +     GE+ V G  L  GY+  P LT E  +      DG   
Sbjct: 2510 RVVGARVAYILDADLALVPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRL 2569

Query: 495  FHTGDIGQILPNGVVKIIDRKKNLIKI 521
            + TGD+ ++  +G+V+ + R  + +KI
Sbjct: 2570 YRTGDLVRLRADGLVEYVGRIDHQVKI 2596

Length = 4334

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 40.1 bits (95), Expect = 0.003
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY+E++ EV +  +AL++ G + G RV IY    P+   AM AC
Sbjct: 100 TYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC 143

Length = 637

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 23/76 (30%), Positives = 37/76 (48%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+ E+  ++ + L   G +PG RV       P+ V A+ A   +  I VPL+   GP
Sbjct: 2   SYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFGP 61

Query: 138 GAVNFILDHAEIDFVF 153
            A+ + L H+    V 
Sbjct: 62  KAIEYRLGHSGAKVVV 77

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 20/179 (11%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSL---ICVPLYDT 134
           T  E+  +V ++ +AL A G E G  + I   + P  V A+    A+ L   + V + D+
Sbjct: 210 TLSELRSQVSRVANALDALGFEKGDAIAI---DMPMNVHAVIIYLAIILAGCVVVSIADS 266

Query: 135 LGPGAVNFILDHAEIDFVFVQDKKV---KEL-LSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
             P  +   L  ++   +F QD  V   K + L      A+  + +V    L A+ K + 
Sbjct: 267 FAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIV----LPADGKSVR 322

Query: 191 VQTGIKPYSWDEFL----HLGKVNEMEILPPQPFNICT-IMYTSGTSGDPKGVVLTHET 244
           V+      SWD+FL     L + +E + +  QP    T I+++SGT+G+PK +  T  T
Sbjct: 323 VKLREGDMSWDDFLARANGLRRPDEYKAVE-QPVEAFTNILFSSGTTGEPKAIPWTQLT 380

Length = 728

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY+E++ EV +  + L++ G + G RV IY    P+   AM AC
Sbjct: 90  TYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLAC 133

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	553
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
KOG3628	1363	consensus Predicted AMP-binding protein [General f	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.97
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.97
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.94
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.93
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.9
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.86
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.82
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.66
PRK09188	365	serine/threonine protein kinase; Provisional	99.19
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	99.12
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.27
PLN02247	606	indole-3-acetic acid-amido synthetase	97.94
PLN02249	597	indole-3-acetic acid-amido synthetase	97.88
PLN02620	612	indole-3-acetic acid-amido synthetase	97.82
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	93.69
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	86.04
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	85.82
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	80.48

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=1.7e-76  Score=595.21  Aligned_cols=526  Identities=45%  Similarity=0.746  Sum_probs=474.8

Q ss_pred             Ccceecccc--CCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCC
Q 008787           22 GPVYRNLLA--SNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE   99 (553)
Q Consensus        22 ~~~~r~~~~--~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~   99 (553)
                      ++.+|+...  ..+++..+....|+++.|++.+..+|+.+++-.....+ ..+.|+.+||.|..+++.+++..|+++|++
T Consensus        53 ~~~~~s~~~~~~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~  131 (691)
T KOG1256|consen   53 DGSRRSAVLPREELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLGVK  131 (691)
T ss_pred             CCceeeeeccCCCCCCCCCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhCCC
Confidence            389999988  56667777889999999999999999999999873323 568899999999999999999999999999


Q ss_pred             CCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEc-chhhhhhhccccc-cccCccEEE
Q 008787          100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ-DKKVKELLSPDCR-SAQRLRVMV  177 (553)
Q Consensus       100 ~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~-~~~~~~~~~~~~~-~~~~~~~~~  177 (553)
                      +++.|+|+.-|++||++..+||...|.++||+....+++++.++++.+++.++|++ ++....+++.... ..+.++.++
T Consensus       132 ~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI  211 (691)
T KOG1256|consen  132 EDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAII  211 (691)
T ss_pred             CCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEE
Confidence            99999999999999999999999999999999999999999999999999999999 6677777777665 367899999


Q ss_pred             EecCCchHHHHHHhhCCceeeeHHHHHhccccccccc-CCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhh
Q 008787          178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL  256 (553)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~  256 (553)
                      .+++............+...++|+++.+.+....... .++.++|.|.|+|||||||.||||++||+|++..+.......
T Consensus       212 ~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~  291 (691)
T KOG1256|consen  212 QLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLS  291 (691)
T ss_pred             EecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhh
Confidence            9999998888888888999999999999986655555 478999999999999999999999999999999665433332


Q ss_pred             ccccCC-CCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHH
Q 008787          257 DQFEDK-MTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE  335 (553)
Q Consensus       257 ~~~~~~-~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~  335 (553)
                      ...... ....|++++++|+.|++..+.-...+..|+.+.+.++|+..+.+.+++.+||.+.++|.+|+++.+.+++...
T Consensus       292 ~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~  371 (691)
T KOG1256|consen  292 AAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQ  371 (691)
T ss_pred             hcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHh
Confidence            221112 2347999999999999999987777899999999999999999999999999999999999999999999999


Q ss_pred             hhchHHHHHHHHHHHHHH-HHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEee
Q 008787          336 ELRPLRRRIFDALYKYKL-AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQG  414 (553)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~  414 (553)
                      ....+++.+|+++.+.+. -.+..|-.+. ...++|++.|+++++.+|+++|.+++|++|+++++..+++..+|++|+++
T Consensus       372 ~sgflkr~l~~~A~~~k~~~~~~~G~~~~-~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eG  450 (691)
T KOG1256|consen  372 KSGFLKRKLFNFAMAYKLEHRLMKGKSRS-RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEG  450 (691)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhCCCCcc-cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeec
Confidence            999999999999999999 4466664443 68899999999999999999999999999999999999999999999999


Q ss_pred             eccccCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCC
Q 008787          415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDG  493 (553)
Q Consensus       415 YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g  493 (553)
                      ||.||+++.++...+.+. ..+++|.|+|++++|++|+++.+....+  ..|||||+|++++.|||++|+.|++++ .||
T Consensus       451 YGlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~--~~GEIcirG~~Vf~GYyK~p~~T~e~ideDG  527 (691)
T KOG1256|consen  451 YGLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADG--SKGEICVRGPNVFMGYYKDPEKTAEAIDEDG  527 (691)
T ss_pred             ccccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcCcCC--CcceEEEecchhceeccCChHHHhhhhcccc
Confidence            999999977776666555 5599999999999999999888877665  479999999999999999999999999 999


Q ss_pred             ccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       494 ~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |++|||+|+++++|.|.+.||.++++++++|++|.|+.||++..+.+.|.+.+|.|.++
T Consensus       528 WLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~  586 (691)
T KOG1256|consen  528 WLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSL  586 (691)
T ss_pred             ccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcc
Confidence            99999999999999999999999999999999999999999999999999999999875

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=6.8e-76  Score=633.16  Aligned_cols=549  Identities=52%  Similarity=0.944  Sum_probs=439.9

Q ss_pred             ccccccccccCCCCCCCCCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHH
Q 008787            4 FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVY   83 (553)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~   83 (553)
                      +-.++.+.+...+..|.++++||+.....+++.....+.++.++|.++++++|+++|+.+....++..+.++.+||+||.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~   86 (666)
T PLN02614          7 FIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVY   86 (666)
T ss_pred             eEEEecccccCCCCCCCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHH
Confidence            34567777888888999999999998777776545667899999999999999999998531102223456679999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhh
Q 008787           84 EEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL  163 (553)
Q Consensus        84 ~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~  163 (553)
                      ++++++|++|+++|+++||+|+|+++|++++++++|||+++|++++|+++.++++++.+++++++++++|++......+.
T Consensus        87 ~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~  166 (666)
T PLN02614         87 DIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELF  166 (666)
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999887655443


Q ss_pred             ccccccccCccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccH
Q 008787          164 SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHE  243 (553)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~  243 (553)
                      .........+..++.++..................++++++........+.....++++++|+|||||||.||||++||+
T Consensus       167 ~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~  246 (666)
T PLN02614        167 KTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNE  246 (666)
T ss_pred             HhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecH
Confidence            32221112345566665422111111111123356788776543222222233467899999999999999999999999


Q ss_pred             hHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCChHHHHHHhhhhcCcEEeechHHH
Q 008787          244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVF  323 (553)
Q Consensus       244 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~  323 (553)
                      +++..+......+......+..+|++++++|++|.++......++..|+++++.++++..+++.+++++||+++++|.++
T Consensus       247 nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~  326 (666)
T PLN02614        247 SIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVL  326 (666)
T ss_pred             HHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHHH
Confidence            99987765443321111246788999999999999998766667889999998877999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHH
Q 008787          324 EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFL  403 (553)
Q Consensus       324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~  403 (553)
                      ..|.+.+.......+.+...++.++.+.+...+..+.......+.++.+.++..++.+++++|.+++||+++++++.+++
T Consensus       327 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~~~  406 (666)
T PLN02614        327 DRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFL  406 (666)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHH
Confidence            99998777666666666777888887777666655433344466778888888888888999999999999998865544


Q ss_pred             HHhcCCceEeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCh
Q 008787          404 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP  483 (553)
Q Consensus       404 ~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~  483 (553)
                      +...++++++.||+||+++..+...+......+++|+|+|+++++|+|+++++..+++.|+.|||+|+||+++.|||++|
T Consensus       407 ~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~p  486 (666)
T PLN02614        407 RVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKRE  486 (666)
T ss_pred             HHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCH
Confidence            44335899999999998876554444333345899999999999999855544456677899999999999999999999


Q ss_pred             hhhhhhccCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          484 DLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       484 ~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +.|++.|.||||+|||+|++|+||+|+|+||.+|+|++++|++|+|.+||++|.+||.|.+|+|+|++.
T Consensus       487 e~T~~~f~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~  555 (666)
T PLN02614        487 DLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSF  555 (666)
T ss_pred             HHhhhhhccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCC
Confidence            999999999999999999999999999999999999976899999999999999999999999999973

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.3e-74  Score=623.90  Aligned_cols=543  Identities=50%  Similarity=0.899  Sum_probs=443.0

Q ss_pred             cccccccCCCCCCCCCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHH
Q 008787            7 QVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEV   86 (553)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v   86 (553)
                      -++|..-.++.+|.++++||+....+.+........++.++|.++++++|+++|+......++..++++++||+||.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v   87 (660)
T PLN02861          8 KVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAA   87 (660)
T ss_pred             eeccCCCCCCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHH
Confidence            35566666678899999999998777776666777899999999999999999997531113334667889999999999


Q ss_pred             HHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccc
Q 008787           87 LQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD  166 (553)
Q Consensus        87 ~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~  166 (553)
                      +++|++|.++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++......+....
T Consensus        88 ~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~  167 (660)
T PLN02861         88 IRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCL  167 (660)
T ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999877655543332


Q ss_pred             cccccCccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHH
Q 008787          167 CRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA  246 (553)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~  246 (553)
                      ......++.++.+++.................+|.++...... .....+..++++++|+|||||||.||||++||++++
T Consensus       168 ~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~  246 (660)
T PLN02861        168 PKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSL-DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAII  246 (660)
T ss_pred             hhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcc-cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHH
Confidence            2221245666666543221111111112345677777654321 122234568999999999999999999999999999


Q ss_pred             HHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCChHHHHHHhhhhcCcEEeechHHHHHH
Q 008787          247 TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKI  326 (553)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l  326 (553)
                      ..+......+......+..+|++++.+|++|.+++...+.+++.|+++++.+.++..+++.|++++||+++++|.++..|
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l  326 (660)
T PLN02861        247 AEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRI  326 (660)
T ss_pred             HHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHHH
Confidence            88766544331111124678999999999999998776668999999998877999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHh
Q 008787          327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT  406 (553)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~  406 (553)
                      .+.+.........+...+++++.+.+...+..+.......+.++.+.++.+++.+++++|.+++||+++++++.+++ +.
T Consensus       327 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~-~~  405 (660)
T PLN02861        327 YTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFL-RV  405 (660)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHH-HH
Confidence            98887777777788888999999999888876655555567788888999999999999999999999999986644 44


Q ss_pred             cCC-ceEeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhh
Q 008787          407 CCA-FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL  485 (553)
Q Consensus       407 ~~~-~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~  485 (553)
                      ++. .+++.||+||+++.++..........+++|+|+|+++++++++++++.....+++.|||+|+||+++.||+++|+.
T Consensus       406 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~  485 (660)
T PLN02861        406 TSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDL  485 (660)
T ss_pred             HcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHH
Confidence            554 7999999999987665443333233589999999999999985444433334556899999999999999999999


Q ss_pred             hhhhccCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecC
Q 008787          486 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSS  551 (553)
Q Consensus       486 ~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~  551 (553)
                      |++.|.||||+|||+|++|+||+|+|+||.+|+|++++|++|+|.+||++|.+||.|.+|+|+|++
T Consensus       486 T~~~f~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~  551 (660)
T PLN02861        486 TEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNS  551 (660)
T ss_pred             HHhhhhccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecC
Confidence            999999999999999999999999999999999997689999999999999999999999999987

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=2.4e-74  Score=620.52  Aligned_cols=551  Identities=79%  Similarity=1.323  Sum_probs=459.0

Q ss_pred             CCcccccccccccCCCCCCCCCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHH
Q 008787            1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYK   80 (553)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~   80 (553)
                      ||-.++++.+..++.+.+|.++++||+....+.++..++.++|+.++|.+.++++|+++|+.+....++..+.++.+||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~   80 (660)
T PLN02430          1 MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYK   80 (660)
T ss_pred             CCceeeeecccCCCCCCCCCCCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHH
Confidence            88888888877776678999999999988666676666788999999999999999999997641112334556778999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhh
Q 008787           81 EVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK  160 (553)
Q Consensus        81 el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~  160 (553)
                      ||.+++.++|.+|.+.|+++||+|+|+++|+++++++++||+++|++++|+++..+++++.++++.++++++|++.....
T Consensus        81 el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~  160 (660)
T PLN02430         81 EVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIK  160 (660)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876543


Q ss_pred             hhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEe
Q 008787          161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL  240 (553)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~  240 (553)
                      ..........+.+..++.+++............+...++|++++..+...........++++++|+|||||||.||||++
T Consensus       161 ~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~l  240 (660)
T PLN02430        161 ELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL  240 (660)
T ss_pred             HHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEe
Confidence            33222222234556677765533221111112233457888887655332222334468899999999999999999999


Q ss_pred             ccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCChHHHHHHhhhhcCcEEeech
Q 008787          241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP  320 (553)
Q Consensus       241 th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~i~~~~~t~l~~~p  320 (553)
                      ||+++...+.............+..+|++++++|++|.++......++..|+++++...++..+++.+++++||++.++|
T Consensus       241 th~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP  320 (660)
T PLN02430        241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVP  320 (660)
T ss_pred             ecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecH
Confidence            99999987765433221112245678999999999999998876677889999988877899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHH
Q 008787          321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE  400 (553)
Q Consensus       321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~  400 (553)
                      .+|+++.+.+........++.+.+++.+.+.+...++.+.......++++.+.++.++..+|+++|.+++||+++++++.
T Consensus       321 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~  400 (660)
T PLN02430        321 RVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIE  400 (660)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHH
Confidence            99999999888888777888999999999999998887765555667888889999999999999999999999999998


Q ss_pred             HHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCcccccc
Q 008787          401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY  480 (553)
Q Consensus       401 ~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~  480 (553)
                      ++++...+.+++++||+||+++..+..........+++|.|.|+++++++++++.+..+.+.++.|||+|+||+++.||+
T Consensus       401 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~  480 (660)
T PLN02430        401 EFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY  480 (660)
T ss_pred             HHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCcccccc
Confidence            77776545789999999999887766554444445899999999999999866666566666678999999999999999


Q ss_pred             CChhhhhhhccCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecC
Q 008787          481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSS  551 (553)
Q Consensus       481 ~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~  551 (553)
                      ++|+.+++.|.||||+|||+|++|+||+|++.||.+|+|++++|++|+|.+||+++.+||.|.+|+|+|.+
T Consensus       481 ~~~e~t~~~~~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~  551 (660)
T PLN02430        481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS  551 (660)
T ss_pred             CChHHhhhhhhccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC
Confidence            99999999999999999999999999999999999999997689999999999999999999999999975

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.7e-71  Score=600.62  Aligned_cols=527  Identities=40%  Similarity=0.658  Sum_probs=432.2

Q ss_pred             CCCCCCCCcceeccccCCCCCC---CCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHH
Q 008787           15 KDGKPSVGPVYRNLLASNGFPS---VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVS   91 (553)
Q Consensus        15 ~~~~~~~~~~~r~~~~~~~~~~---~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~   91 (553)
                      ..++.+.+.+||+...+.++.+   ..+...++.++|+++++++|+++|+.++...++..+.++.+||+||.++++++|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~   93 (651)
T PLN02736         14 EKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGS   93 (651)
T ss_pred             CCCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHH
Confidence            4455689999998766655533   2355679999999999999999999542101333455678999999999999999


Q ss_pred             HHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhcccccccc
Q 008787           92 ALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ  171 (553)
Q Consensus        92 ~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~  171 (553)
                      +|.++|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++|++.+....+..... ..+
T Consensus        94 ~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~-~~~  172 (651)
T PLN02736         94 GLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLS-EIP  172 (651)
T ss_pred             HHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhh-cCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999877665544332 334


Q ss_pred             CccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhh
Q 008787          172 RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG  251 (553)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~  251 (553)
                      .+..++.++..................+|+++.........+.....++++++|+|||||||.||||++||++++..+..
T Consensus       173 ~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~  252 (651)
T PLN02736        173 SVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAG  252 (651)
T ss_pred             CceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHH
Confidence            55666666533221111111123346678887765432222233457899999999999999999999999999988877


Q ss_pred             chhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCChHHHHHHhhhhcCcEEeechHHHHHHHHHHH
Q 008787          252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK  331 (553)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~  331 (553)
                      ....+     .+..+|++++.+|++|.+++...+.++..|+++++.++++..+++.|+++++|+++++|.++..|.+.+.
T Consensus       253 ~~~~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~  327 (651)
T PLN02736        253 SSLST-----KFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGIT  327 (651)
T ss_pred             HHhcc-----CCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHHHHH
Confidence            66555     6778999999999999999987777899999999988899999999999999999999999999999888


Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCce
Q 008787          332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFL  411 (553)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i  411 (553)
                      ......+.+++.++.++...+...+..+.   ...+.++++.++..+..+++++|.+++||+++++++.+++++.+|+++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~  404 (651)
T PLN02736        328 NAVKESGGLKERLFNAAYNAKKQALENGK---NPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRV  404 (651)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHcCC---CCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCe
Confidence            87777788888888888777665555442   233456777888888888889999999999999999999998889999


Q ss_pred             EeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCC-CCCCCCCCeEEEecCCccccccCChhhhhhhc
Q 008787          412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI  490 (553)
Q Consensus       412 ~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~-~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~  490 (553)
                      ++.||+||+++..+...... ...+++|+|+||++++++|.+++... ...+++.|||+|+||+++.||+++|+.+++.|
T Consensus       405 ~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~  483 (651)
T PLN02736        405 LEGYGMTETSCVISGMDEGD-NLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVI  483 (651)
T ss_pred             EEEechHHhchheeccCCCC-CCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhh
Confidence            99999999987666544433 34488999999999999983332111 11223579999999999999999999999998


Q ss_pred             -cCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecC
Q 008787          491 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSS  551 (553)
Q Consensus       491 -~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~  551 (553)
                       .||||+|||+|++|+||+|+|+||.+|+|++++|++|+|.+||++|.+||.|.+|+|+|..
T Consensus       484 ~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~  545 (651)
T PLN02736        484 DEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDS  545 (651)
T ss_pred             ccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecC
Confidence             6999999999999999999999999999997679999999999999999999999999964

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.1e-71  Score=592.49  Aligned_cols=515  Identities=26%  Similarity=0.403  Sum_probs=414.9

Q ss_pred             CCCCCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-
Q 008787           18 KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-   96 (553)
Q Consensus        18 ~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~-   96 (553)
                      ...++++||..+..+..+  .....++.++|.++++++|+++|+++.   + ....++.+||+||.+++.++|++|.+. 
T Consensus        39 ~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el~~~v~~~A~~L~~~~  112 (746)
T PTZ00342         39 NENESSVYCMKDHKKKSS--LYVYKHIMKLLLEKYKLNNNKIAIVEH---S-CGEPQNYITYGNFFKKVLSFSHSLNTYE  112 (746)
T ss_pred             CCCCCCceecCchhhccc--ccccchHHHHHHHHHhhcCCceeEecc---C-CCCCceeeeHHHHHHHHHHHHHHHHHHh
Confidence            335566999777666622  234789999999999999999999853   1 122367899999999999999999974 


Q ss_pred             --CCCCC-----------CEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhh
Q 008787           97 --GAEPG-----------CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL  163 (553)
Q Consensus        97 --gl~~g-----------d~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~  163 (553)
                        |+++|           |+|+++++|+++|+++.+||+++|++.+|+++.++++++.++|++++++++|++.+....+.
T Consensus       113 ~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~  192 (746)
T PTZ00342        113 GKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLL  192 (746)
T ss_pred             hcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHH
Confidence              99999           99999999999999999999999999999999999999999999999999999887776665


Q ss_pred             ccccccccCccEEEEecCCchH---------------------------------------------------------H
Q 008787          164 SPDCRSAQRLRVMVCFTSLTAE---------------------------------------------------------Q  186 (553)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------~  186 (553)
                      +.. ...+.++.+++++.....                                                         .
T Consensus       193 ~~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  271 (746)
T PTZ00342        193 ERK-NELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDL  271 (746)
T ss_pred             Hhh-ccCCCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHH
Confidence            443 234566777777642110                                                         0


Q ss_pred             HHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCC
Q 008787          187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVD  266 (553)
Q Consensus       187 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~  266 (553)
                      .......+.....|+++.... ....+..+..++++++|+|||||||.||||++||+|+++.+.......   .......
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~---~~~~~~~  347 (746)
T PTZ00342        272 KEKAKKLGISIILFDDMTKNK-TTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHS---IFKKYNP  347 (746)
T ss_pred             HHHhhcCCCEEEEHHHHHhhc-ccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcc---cccCCCC
Confidence            000000112233444444332 112223345689999999999999999999999999998876543221   0012345


Q ss_pred             cEEEEecChHHHHHHHHHHHHHHcCcEEEEecCChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 008787          267 DVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (553)
Q Consensus       267 ~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (553)
                      +++++++|++|.+++...+.+++.|+++++.++++..+++.|++++||+++++|.+|.+|.+.+.......+.+.+.+++
T Consensus       348 d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~  427 (746)
T PTZ00342        348 KTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVK  427 (746)
T ss_pred             CeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence            89999999999999987777899999999988899999999999999999999999999998887777777777888888


Q ss_pred             HHHHHHHHHHhccCCcCCcchHHHHH--HHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCce
Q 008787          347 ALYKYKLAWMNMGYKQREASPLADLL--AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT  424 (553)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~  424 (553)
                      ++...+.......     ....++.+  .++++++.+++++|.+++||+++++++.++++..+|++++++||+||+++..
T Consensus       428 ~a~~~~~~~~~~~-----~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~  502 (746)
T PTZ00342        428 KILSLRKSNNNGG-----FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPI  502 (746)
T ss_pred             HHHHHHHHhhcCC-----cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCccccee
Confidence            8888776654322     12334333  5788899999999999999999999999999998899999999999998766


Q ss_pred             eeccCCCccccCccCCCC-CCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEE
Q 008787          425 TVCFPDEMCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ  502 (553)
Q Consensus       425 ~~~~~~~~~~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~  502 (553)
                      +...... ...+++|+|+ |+++++++|.++..  ....++.|||+++||+++.||+++|+.|+++| .||||+|||+|+
T Consensus       503 ~~~~~~~-~~~gsvG~p~~pg~e~ki~d~~~~~--~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~  579 (746)
T PTZ00342        503 FVQHADD-NNTESIGGPISPNTKYKVRTWETYK--ATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQ  579 (746)
T ss_pred             eeccCCC-CCcccccCcCCCcEEEEEecccccc--cCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEE
Confidence            6554433 3458999998 99999999843222  11223579999999999999999999999999 699999999999


Q ss_pred             EccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecC
Q 008787          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSS  551 (553)
Q Consensus       503 ~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~  551 (553)
                      +|+||+|+|+||.+|+|++++|++|+|.+||+++.+||.|.+|+|+|++
T Consensus       580 ~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~  628 (746)
T PTZ00342        580 INKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDD  628 (746)
T ss_pred             ECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccC
Confidence            9999999999999999997789999999999999999999999999975

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=3.6e-71  Score=566.23  Aligned_cols=483  Identities=35%  Similarity=0.572  Sum_probs=402.4

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++...+.++++.+|+.+++...     ..+.++.+||+|+.+++.++|.+|+..|++.||+|+|++.|+++|+++.+|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a   89 (613)
T COG1022          15 IHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLA   89 (613)
T ss_pred             cccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            578899999999999998898865     467889999999999999999999999997799999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecC----CchHHHHHHhh-CCc
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS----LTAEQKEMAVQ-TGI  195 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~  195 (553)
                      |+.+|++.||+.+..+++++.++|++++++++|++..............++.........+    ........... ...
T Consensus        90 ~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (613)
T COG1022          90 ILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDE  169 (613)
T ss_pred             HHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccc
Confidence            9999999999999999999999999999999999987655544444333222111111111    00000000000 000


Q ss_pred             eeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCC-CCCCcEEEEecC
Q 008787          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYLSFLP  274 (553)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p  274 (553)
                      ....+ . . ..........+..++|.|.|+|||||||.||||++||+|+++++......+     . ..++|++++++|
T Consensus       170 ~~~~~-~-~-~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~-----~~~~~~d~~LsfLP  241 (613)
T COG1022         170 GISLF-L-I-DSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL-----PPIGPGDRVLSFLP  241 (613)
T ss_pred             cchhh-h-h-cccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhC-----CCCCCCcEEEEeCc
Confidence            11111 1 1 111122233567899999999999999999999999999999999988877     4 789999999999


Q ss_pred             hHHHHHHHHHHHHHHcCcEEEEecCChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 008787          275 LAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (553)
Q Consensus       275 ~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (553)
                      +.|++..++.......++..++...++..++..+++++||+++++|.+|+.+.+.+.+...+.+..+..+|.++.+.+..
T Consensus       242 laHi~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~  321 (613)
T COG1022         242 LAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYK  321 (613)
T ss_pred             HHHHHHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            99999998754444455555666669999999999999999999999999999999999999998888899999987754


Q ss_pred             HHhc---cCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC
Q 008787          355 WMNM---GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (553)
Q Consensus       355 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~  431 (553)
                      .++.   +-.........+++.|+++++.+|.++|++++||+++++++..+++.. |++++++||+||+++.++.+++..
T Consensus       322 ~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~~~  400 (613)
T COG1022         322 KISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPPDR  400 (613)
T ss_pred             HHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEccccC
Confidence            4431   111111122378999999999999999999999999999999999997 899999999999999999987776


Q ss_pred             ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEE
Q 008787          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK  510 (553)
Q Consensus       432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~  510 (553)
                      ... +++|.|+|+++++|+|             .|||+||||+||.|||++|+.|+++| .||||+|||+|.+|++|+|+
T Consensus       401 ~~~-gtvG~p~p~~evKI~d-------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~  466 (613)
T COG1022         401 FVL-GTVGKPLPGIEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLV  466 (613)
T ss_pred             ccc-CCcCCcCCCceEEEcc-------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEE
Confidence            555 8999999999999999             59999999999999999999999999 69999999999999999999


Q ss_pred             EEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecC
Q 008787          511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSS  551 (553)
Q Consensus       511 ~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~  551 (553)
                      ++||.+|+|++++|++|.|..||+.+.++|.|.+++|+|+.
T Consensus       467 i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg~~  507 (613)
T COG1022         467 ITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDD  507 (613)
T ss_pred             EeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEecC
Confidence            99999999999999999999999999999999999999954

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=1.1e-69  Score=587.74  Aligned_cols=527  Identities=34%  Similarity=0.582  Sum_probs=423.0

Q ss_pred             CCCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecc--------cCC------CCCCceEeeHHHHHHH
Q 008787           20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPF--------VDG------KFGPYVWKTYKEVYEE   85 (553)
Q Consensus        20 ~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~--------~d~------~~~~~~~~Ty~el~~~   85 (553)
                      .++.+|||...........+...|+.++|.++++++||++|+.....        .++      ..++++.+||+||.++
T Consensus        36 ~~~~~~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~  115 (696)
T PLN02387         36 EPGYAIRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFER  115 (696)
T ss_pred             CCCCceecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHH
Confidence            34446999996643334446678999999999999999999954210        011      1256778999999999


Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhcc
Q 008787           86 VLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP  165 (553)
Q Consensus        86 v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~  165 (553)
                      ++++|++|.++|+++||+|+++++|+++++++++||+++|++++|+++.++++++.++++.++++++|++.+....+...
T Consensus       116 v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~  195 (696)
T PLN02387        116 VCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDI  195 (696)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998777666443


Q ss_pred             ccccccCccEEEEecCCchHHHHH-HhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHh
Q 008787          166 DCRSAQRLRVMVCFTSLTAEQKEM-AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET  244 (553)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~  244 (553)
                      . ...+.++.++.+++........ .........+|+++...+...........++++++|+|||||||.||||++||++
T Consensus       196 ~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~  274 (696)
T PLN02387        196 S-SQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGN  274 (696)
T ss_pred             h-hccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHH
Confidence            3 2335567777776543211110 0112334567888776543322233345689999999999999999999999999


Q ss_pred             HHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC----C-----hHHHHHHhhhhcCcE
Q 008787          245 IATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----D-----LNALRDDLMELKPTL  315 (553)
Q Consensus       245 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~----~-----~~~~~~~i~~~~~t~  315 (553)
                      ++..+......+    ..+..+|++++++|++|.+++.....++..|+++.+...    +     +..++..+++++||+
T Consensus       275 l~~~~~~~~~~~----~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~  350 (696)
T PLN02387        275 IVATVAGVMTVV----PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTL  350 (696)
T ss_pred             HHHHHHHHHhhc----CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcE
Confidence            998877654332    146788999999999999998876667777777665322    1     234567899999999


Q ss_pred             EeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccC--CcCCcchHHHHHHHHHHHHHhCCceeEEEEcCC
Q 008787          316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY--KQREASPLADLLAFRKVKARLGGRLRLVISGGA  393 (553)
Q Consensus       316 l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~  393 (553)
                      ++++|.++.+|.+.........+.+...++..+...++..+...+  .......+++.+.++..+..+|+++|.+++||+
T Consensus       351 ~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGa  430 (696)
T PLN02387        351 MTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGA  430 (696)
T ss_pred             EEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCC
Confidence            999999999999887776666677778888888777766554221  112346688999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCC-CCCCCCeEEEec
Q 008787          394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRG  472 (553)
Q Consensus       394 ~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~-~~~~~Gei~v~~  472 (553)
                      ++++++.++++..+|++++++||+||+++.++...... ...+++|.|+|+++++++|.++++.... .+++.|||+|+|
T Consensus       431 pl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~-~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrG  509 (696)
T PLN02387        431 PLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDD-TSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGG  509 (696)
T ss_pred             CCCHHHHHHHHHHcCCCeeEeechhhcccceeecCccc-CCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEecc
Confidence            99999999998888999999999999987766554433 3348999999999999999555543322 233579999999


Q ss_pred             CCccccccCChhhhhhhcc---CC--ccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEE
Q 008787          473 KTLFSGYYKNPDLTRESII---DG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI  547 (553)
Q Consensus       473 ~~~~~gy~~~~~~~~~~~~---~g--~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V  547 (553)
                      |+++.||+++|+.|.++|.   +|  ||+|||+|++|+||+|++.||.+|+|++++|++|+|.+||++|.+||.|.+|+|
T Consensus       510 p~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V  589 (696)
T PLN02387        510 PSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMV  589 (696)
T ss_pred             CcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEE
Confidence            9999999999999999882   35  999999999999999999999999999867999999999999999999999999


Q ss_pred             EecCC
Q 008787          548 SYSSV  552 (553)
Q Consensus       548 ~g~~~  552 (553)
                      +|++.
T Consensus       590 ~g~~~  594 (696)
T PLN02387        590 HADPF  594 (696)
T ss_pred             EecCC
Confidence            99874

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=7.8e-69  Score=515.47  Aligned_cols=526  Identities=36%  Similarity=0.663  Sum_probs=461.2

Q ss_pred             CCCCCcceeccccCCCCCCCC-CCcccHHHHHHHHHHcCCCCCceeeecc--------cCCC------CCCceEeeHHHH
Q 008787           18 KPSVGPVYRNLLASNGFPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPF--------VDGK------FGPYVWKTYKEV   82 (553)
Q Consensus        18 ~~~~~~~~r~~~~~~~~~~~~-~~~~~l~~~l~~~a~~~p~~~al~~~~~--------~d~~------~~~~~~~Ty~el   82 (553)
                      +++++++|||....+++...+ +...|+++++.+.++++.++.++-.++.        +|++      -+.+..+||.|+
T Consensus        16 n~~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev   95 (678)
T KOG1180|consen   16 NEHETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEV   95 (678)
T ss_pred             CCCCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHH
Confidence            348999999999877777655 5679999999999999999999866533        1232      356678999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCE-EEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhh
Q 008787           83 YEEVLQIVSALRASGAEPGCR-VGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE  161 (553)
Q Consensus        83 ~~~v~~la~~L~~~gl~~gd~-V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~  161 (553)
                      ..++.++|.+|.+.|++++++ ++++++.+.+|..+++||++.+.++|-+...+..+.+.+-|++++++.||++.+.+..
T Consensus        96 ~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~k  175 (678)
T KOG1180|consen   96 YERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPK  175 (678)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHH
Confidence            999999999999999997777 9999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhccccccccCccEEEEecCCchHHHH--HH--hhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCce
Q 008787          162 LLSPDCRSAQRLRVMVCFTSLTAEQKE--MA--VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKG  237 (553)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~  237 (553)
                      +..... ..+.++.++.+++.+.....  ..  .......++|+++++.+.....+..++.++|+|+|+|||||||.|||
T Consensus       176 l~~~l~-~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKG  254 (678)
T KOG1180|consen  176 LKAPLK-QAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKG  254 (678)
T ss_pred             HHHHHh-ccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCce
Confidence            755544 45788899999864322211  11  22467899999999998877667777789999999999999999999


Q ss_pred             EEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC----C-hHHHH----HHh
Q 008787          238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----D-LNALR----DDL  308 (553)
Q Consensus       238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~----~-~~~~~----~~i  308 (553)
                      |+++|.|+++.+........    .+++.|+++.++|+.|++-+.+-+.+++.|+.+-..+.    | ...+.    -.+
T Consensus       255 Vml~H~NiVA~~~G~~~~v~----~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~  330 (678)
T KOG1180|consen  255 VMLTHSNIVAGVTGVGENVP----ELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDL  330 (678)
T ss_pred             EEEecccHHhhhhhhcccCc----ccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCcc
Confidence            99999999999988776652    57899999999999999999999999999999877543    1 11111    124


Q ss_pred             hhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh-ccCCcCCcchHHHHHHHHHHHHHhCCceeE
Q 008787          309 MELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN-MGYKQREASPLADLLAFRKVKARLGGRLRL  387 (553)
Q Consensus       309 ~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~  387 (553)
                      ..+|||++.++|..|.++-+.+.+.....+.+...+|..+...|+..++ .+.    -.++++.+.|++++..+|.+||+
T Consensus       331 ~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~----~s~~ld~lVFkKIr~~lGG~lR~  406 (678)
T KOG1180|consen  331 TELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGP----GSPLLDALVFKKIRALLGGNLRY  406 (678)
T ss_pred             ccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCC----chhhHHHHHHHHHHHHhCCceEE
Confidence            5799999999999999999999999999999999999999999998887 442    36789999999999999999999


Q ss_pred             EEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCe
Q 008787          388 VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE  467 (553)
Q Consensus       388 i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Ge  467 (553)
                      +++||+|++++.++++.-.+.+++.++||.||+++.++.....+... +.+|.|++..+++++|.++++...-.....||
T Consensus       407 ~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~-g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGE  485 (678)
T KOG1180|consen  407 ILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFST-GRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGE  485 (678)
T ss_pred             EEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhccc-ccccCCccceEEEEEEhhhcCccCCCCCCCce
Confidence            99999999999999999999999999999999999888877666555 79999999999999999999887765556899


Q ss_pred             EEEecCCccccccCChhhhhhhc--cCC--ccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcc
Q 008787          468 VCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE  543 (553)
Q Consensus       468 i~v~~~~~~~gy~~~~~~~~~~~--~~g--~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~  543 (553)
                      ||++|+++..||+++++.|++.|  .||  ||+|||+|++++||.|.+.+|.+|++++.+|+.|+..-||++++..|.|.
T Consensus       486 I~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~  565 (678)
T KOG1180|consen  486 ILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVD  565 (678)
T ss_pred             EEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchh
Confidence            99999999999999999999999  489  99999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCCC
Q 008787          544 DVSISYSSVS  553 (553)
Q Consensus       544 ~~~V~g~~~~  553 (553)
                      ..+|++++.+
T Consensus       566 NICvyAd~~~  575 (678)
T KOG1180|consen  566 NICVYADSNK  575 (678)
T ss_pred             heEEeccccc
Confidence            9999998753

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.2e-66  Score=562.23  Aligned_cols=519  Identities=31%  Similarity=0.532  Sum_probs=408.6

Q ss_pred             CCCCcceeccccCC----CCCCCCCCcccHHHHHHHHHHcCCCCCceeeecc----------cCCC--------CCCceE
Q 008787           19 PSVGPVYRNLLASN----GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPF----------VDGK--------FGPYVW   76 (553)
Q Consensus        19 ~~~~~~~r~~~~~~----~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~----------~d~~--------~~~~~~   76 (553)
                      +..+++||......    .+....+...++.++|.++++++|+++|+.+...          .++.        .++++.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (700)
T PTZ00216         42 ENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRY  121 (700)
T ss_pred             CCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceE
Confidence            35688999866443    2222223567999999999999999999987510          0111        124689


Q ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcc
Q 008787           77 KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD  156 (553)
Q Consensus        77 ~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~  156 (553)
                      +||+||.++++++|+.|.++|+++||+|+|+++|+++++++++||+++|++++|+++..+++++.+++++++++++|++.
T Consensus       122 lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~  201 (700)
T PTZ00216        122 ITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNG  201 (700)
T ss_pred             eEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHHHHHhccc--cccc-ccCCCCCCCeEEEEecCCCCC
Q 008787          157 KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK--VNEM-EILPPQPFNICTIMYTSGTSG  233 (553)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~-~~~~~~~~~~~~i~~TSGtTG  233 (553)
                      .....+.............++.+++....    .........+|+++...+.  .... ...+..++++++++|||||||
T Consensus       202 ~~~~~l~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG  277 (700)
T PTZ00216        202 KNVPNLLRLMKSGGMPNTTIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTG  277 (700)
T ss_pred             HHHHHHHHhhhhccCCceEEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCC
Confidence            76655443332111112245555442211    0112335678888876542  1111 123346889999999999999


Q ss_pred             CCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCChHHHHH-------
Q 008787          234 DPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD-------  306 (553)
Q Consensus       234 ~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~-------  306 (553)
                      .||||++||+++++.+......+......+..++++++++|++|.+++.....++..|+++++  .++..+.+       
T Consensus       278 ~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~--~~~~~l~~~~~~~~~  355 (700)
T PTZ00216        278 DPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTDTFARPHG  355 (700)
T ss_pred             cCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEE--CCHHHhhhhhccccc
Confidence            999999999999988776544321111123578999999999999998766666777887766  34555554       


Q ss_pred             HhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCcee
Q 008787          307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR  386 (553)
Q Consensus       307 ~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr  386 (553)
                      .+++++||++.++|.+++.+.+.........+.+.+.++.++...++..+..+.    ..+.++.+.++..+..+++++|
T Consensus       356 ~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~g~~lr  431 (700)
T PTZ00216        356 DLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK----DTPYWNEKVFSAPRAVLGGRVR  431 (700)
T ss_pred             hHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHHHHHhCCcEE
Confidence            688999999999999999999888777777777888888888888877665442    2456788889999999999999


Q ss_pred             EEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCC
Q 008787          387 LVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCG  466 (553)
Q Consensus       387 ~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~G  466 (553)
                      .+++||+++++++.++++..++ ++++.||+||+++..+...... ...+++|+|+|+++++|+| +++......+++.|
T Consensus       432 ~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~-~~~~svG~p~~g~evkI~d-~~~~~~~~~~~~~G  508 (700)
T PTZ00216        432 AMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGD-LEPNAVGQLLKGVEMKLLD-TEEYKHTDTPEPRG  508 (700)
T ss_pred             EEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCC-CCCCCcCCcCCCeEEEEee-chhhccCCCCCCCc
Confidence            9999999999999999888878 9999999999987666544333 3348999999999999999 44322233345689


Q ss_pred             eEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcce-
Q 008787          467 EVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED-  544 (553)
Q Consensus       467 ei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~-  544 (553)
                      ||+|+||+++.||+++|+.|++.| .||||+|||+|++|+||+|+|+||.+|+|+..+|++|+|.+||+++.+||.|.+ 
T Consensus       509 EL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~  588 (700)
T PTZ00216        509 EILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPN  588 (700)
T ss_pred             eEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccc
Confidence            999999999999999999999999 799999999999999999999999999998458999999999999999999997 


Q ss_pred             -EEEEec
Q 008787          545 -VSISYS  550 (553)
Q Consensus       545 -~~V~g~  550 (553)
                       ++|++.
T Consensus       589 ~~~v~~~  595 (700)
T PTZ00216        589 GVCVLVH  595 (700)
T ss_pred             eEEEEEe
Confidence             344443

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=8.4e-68  Score=500.21  Aligned_cols=453  Identities=23%  Similarity=0.324  Sum_probs=386.1

Q ss_pred             cCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Q 008787           30 ASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA  109 (553)
Q Consensus        30 ~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~  109 (553)
                      ..+|-...+-...|++++++-.+++-||+.|+++.   ..  +  .++||+|+.+.++++|+.|...|+++||+|++..|
T Consensus        38 ~~~g~~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~---~e--g--~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgp  110 (596)
T KOG1177|consen   38 YVHGCSQIPLDSETIGQLLETTTERVPDKEAAVFD---HE--G--IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGP  110 (596)
T ss_pred             ccCCCCCCCcccccHHHHHHHHhhccCcceEEEEe---ec--c--chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecC
Confidence            45555566778899999999999999999999885   22  1  46999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhh-----hhc------------cccccccC
Q 008787          110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE-----LLS------------PDCRSAQR  172 (553)
Q Consensus       110 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~~------------~~~~~~~~  172 (553)
                      |+.+|+.+++||+++|.+.+++||.+...++++.|+..+++++|+.......     +++            ...+..+.
T Consensus       111 N~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~  190 (596)
T KOG1177|consen  111 NSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPE  190 (596)
T ss_pred             ChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCcccccccccc
Confidence            9999999999999999999999999999999999999999999998753211     111            11233456


Q ss_pred             ccEEEEecCCchHHHHHHhhCCceeeeHHHHHhccccccc-----ccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHH
Q 008787          173 LRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM-----EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT  247 (553)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~  247 (553)
                      +..++..++...         -.+.+.+++++........     ......+++++.|.|||||||.||++.+||.++++
T Consensus       191 lthvi~~~ed~~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~N  261 (596)
T KOG1177|consen  191 LTHVILADEDHP---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLN  261 (596)
T ss_pred             ceEEEecCCCCc---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhh
Confidence            666666663322         2356677777766544221     11234679999999999999999999999999999


Q ss_pred             HHhhchhhhccccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHH
Q 008787          248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFE  324 (553)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~  324 (553)
                      ++......+     ++...+++.+..|++|.+|... ++.++..|++++++..  ++...+++|.++++|.++++|++|.
T Consensus       262 na~~vg~r~-----g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~  336 (596)
T KOG1177|consen  262 NARAVGARA-----GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFV  336 (596)
T ss_pred             hHHHHHHHh-----CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHH
Confidence            999988887     7888899999999999999764 8889999999999765  9999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHH
Q 008787          325 KIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR  404 (553)
Q Consensus       325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~  404 (553)
                      .|++.                                     +....++++        ++|.++.||+++++++.+.+.
T Consensus       337 Dlln~-------------------------------------~~~~~~~~s--------~lr~~vigGa~~s~eLlk~iv  371 (596)
T KOG1177|consen  337 DLLNI-------------------------------------PQKQQVDLS--------SLRKGVIGGAPVSPELLKLIV  371 (596)
T ss_pred             HHhcc-------------------------------------hhhccCchh--------hhhhheeCCCCCCHHHHHHHH
Confidence            98752                                     223333343        899999999999999999998


Q ss_pred             HhcCCc-eEeeeccccCCCceeeccCCC--ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccC
Q 008787          405 VTCCAF-LVQGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK  481 (553)
Q Consensus       405 ~~~~~~-i~~~YG~tE~g~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~  481 (553)
                      ...++. +...||+||++.+.+....++  .....++|..+++.+..+++ .++...+.+  ..|||++||+.++.|||+
T Consensus       372 ~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~--~~Gel~iRGY~tMl~Ywg  448 (596)
T KOG1177|consen  372 NQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLG--TKGELLIRGYSTMLGYWG  448 (596)
T ss_pred             HhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccC--CCceEEEEechhheeecC
Confidence            877654 788999999998888766554  34457899999999999999 777666665  679999999999999999


Q ss_pred             Chhhhhhhc-cCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          482 NPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       482 ~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +++.+.++. .|.||+|||+|.+|++|+++++||.+|+|+ ++|++|+|.|||+.|.+||.|.++.|||+++
T Consensus       449 ~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D  519 (596)
T KOG1177|consen  449 EEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHPLVKEAHVVGVPD  519 (596)
T ss_pred             CcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCCCeeeEEEEccCC
Confidence            999998887 889999999999999999999999999999 6999999999999999999999999999986

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=9.9e-68  Score=537.07  Aligned_cols=435  Identities=28%  Similarity=0.416  Sum_probs=354.7

Q ss_pred             HHHcCCCC-CceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEeCCchhHHHHHHHHHhcCCE
Q 008787           51 SVQKYPGN-RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG--AEPGCRVGIYGANCPQWVEAMEACNALSLI  127 (553)
Q Consensus        51 ~a~~~p~~-~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~g--l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  127 (553)
                      .+..++++ +.+++.   +. .+  +.+||.|+.+++.++|.+|.++|  +++||+|++++||+++++++++||+.+|++
T Consensus        25 ~~~~~~~~~~~~i~~---~~-~g--~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~   98 (537)
T KOG1176|consen   25 PAFVYLDRNTSLVYQ---DS-DG--RELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAV   98 (537)
T ss_pred             cccccccCcceEEEe---cC-CC--cEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcc
Confidence            33344444 677664   21 11  58999999999999999999875  899999999999999999999999999999


Q ss_pred             EeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeee-HHHHHhc
Q 008787          128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS-WDEFLHL  206 (553)
Q Consensus       128 ~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~  206 (553)
                      ..+++|..++.++.+.++.++++++|++.+....+.+......   ..++++.......   .........+ +..+...
T Consensus        99 ~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---~~i~~l~~~~~~~---~~~~~~~~~~~~~~~~~~  172 (537)
T KOG1176|consen   99 LNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---LKIIVLTGDEGVI---SISDLVEDLDAFEDLMPE  172 (537)
T ss_pred             ccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---CceEEEecccCcc---ccccccccccchhhcccc
Confidence            9999999999999999999999999999998887766553322   3333433320000   0000001112 3333333


Q ss_pred             ccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHH
Q 008787          207 GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEY  286 (553)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~  286 (553)
                      .... . ..+...+|++.+.|||||||.||||++||++++.+........     .+...++.++.+|++|.+|+...+.
T Consensus       173 ~~~~-~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~-----~~~~~~v~l~~lPl~H~~Gl~~~~~  245 (537)
T KOG1176|consen  173 GLPD-G-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGW-----ELTSDDVYLCTLPLFHIYGLITLLL  245 (537)
T ss_pred             CCCc-c-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcc-----cCCCCceEEEechHHHHhHHHHHHH
Confidence            2111 1 4566789999999999999999999999999998876544433     5667899999999999999998777


Q ss_pred             H-HHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCC
Q 008787          287 F-FRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE  364 (553)
Q Consensus       287 ~-l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (553)
                      + +..|.++++.+. +++.+++.+++|++|++.++|.++..|++.                                   
T Consensus       246 ~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~-----------------------------------  290 (537)
T KOG1176|consen  246 SLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKS-----------------------------------  290 (537)
T ss_pred             HHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcC-----------------------------------
Confidence            5 555556666666 999999999999999999999999998752                                   


Q ss_pred             cchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC-CceEeeeccccCCCceeeccCCCccccCccCCCCC
Q 008787          365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV  443 (553)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~  443 (553)
                        +....+++        +++|.+.+||+++++++.+.+++.++ ..+.+.||+||+|+.++.+......+.+++|++++
T Consensus       291 --p~~~~~~l--------~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~  360 (537)
T KOG1176|consen  291 --PIVKKYDL--------SSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLP  360 (537)
T ss_pred             --CccCcccC--------CccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCcccc
Confidence              22333333        49999999999999999999999998 88999999999998888876665556699999999


Q ss_pred             CeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccC-CccccCceEEEccCCcEEEEecccCceecC
Q 008787          444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRKKNLIKIS  522 (553)
Q Consensus       444 ~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~-g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~  522 (553)
                      +.++++.+ +.+  ...++++.||||++|++++.||++||++|++.|.+ |||+|||+|++|+||+|+|++|.+|+|+. 
T Consensus       361 g~~~~v~~-e~g--~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~-  436 (537)
T KOG1176|consen  361 GVRVKVLD-ETG--VSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKY-  436 (537)
T ss_pred             ceEEEeeC-CCC--CCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheee-
Confidence            88888877 444  45556789999999999999999999999999955 99999999999999999999999999997 


Q ss_pred             CceeecchhHHHHHhcCcCcceEEEEecCCC
Q 008787          523 QGEYVALEYLENVYCVAPIIEDVSISYSSVS  553 (553)
Q Consensus       523 ~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~~  553 (553)
                      +|++|+|.|||++|..||.|.||+|||.++.
T Consensus       437 ~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe  467 (537)
T KOG1176|consen  437 GGEQVSPAEIEAVLLTHPDVLEAAVVGIPDE  467 (537)
T ss_pred             CCEEeCHHHHHHHHHhCCCccEEEEEccccc
Confidence            8999999999999999999999999999873

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=8.1e-66  Score=541.88  Aligned_cols=441  Identities=29%  Similarity=0.434  Sum_probs=365.8

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ...++.+.|.++++++|+++|+++.   +.. +   ++||+||.++++++|..|++.|+++||+|+|+++|++++++++|
T Consensus         9 ~~~~~~~~l~~~a~~~~~~~a~~~~---~~~-~---~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~   81 (534)
T COG0318           9 AELTLASLLERAARRNPDRPALIFL---GRG-G---RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFL   81 (534)
T ss_pred             ccccHHHHHHHHHHhCCCceEEEEc---CCC-c---eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4588999999999999999999986   331 1   59999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCcee-e
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-Y  198 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  198 (553)
                      ||+++|++++|+++.++..++.++++.+++++++++............ ..+....+........           .. .
T Consensus        82 a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~  149 (534)
T COG0318          82 AALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAE-ALPVVLVVLLVGDADD-----------RLPI  149 (534)
T ss_pred             HHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhc-cCCcceEEEecccccc-----------cccc
Confidence            999999999999999999999999999999999999873333322221 1122222222222111           00 2


Q ss_pred             eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCC--CCCCcEEEEecChH
Q 008787          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK--MTVDDVYLSFLPLA  276 (553)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~  276 (553)
                      ++..+...............++++++++|||||||.||+|++||+|+..+...+...+     .  +...|++++++|++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~~~d~~l~~lPl~  224 (534)
T COG0318         150 TLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-----GGGLTPDDVVLSWLPLF  224 (534)
T ss_pred             cHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-----cccCCCCceEEEecChH
Confidence            4455533322222222236789999999999999999999999999999988877766     5  78889999999999


Q ss_pred             HHHHHHHHHH-HHHcCcEEEEec---CChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 008787          277 HILDRVIEEY-FFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (553)
Q Consensus       277 ~~~g~~~~~~-~l~~g~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (553)
                      |.+|+...+. .++.|+++++.+   .+++.++..+.++++|++.++|+++..|++......                  
T Consensus       225 H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~------------------  286 (534)
T COG0318         225 HIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD------------------  286 (534)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCc------------------
Confidence            9999997655 589999999987   389999999999999999999999999875322111                  


Q ss_pred             HHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC-CceEeeeccccCCCceeeccCCC
Q 008787          353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDE  431 (553)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~i~~~YG~tE~g~~~~~~~~~~  431 (553)
                                         .+++       +++|.+++||+++++++.+.+++.++ ..+++.||+||++..++......
T Consensus       287 -------------------~~~~-------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~  340 (534)
T COG0318         287 -------------------DDLS-------SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDD  340 (534)
T ss_pred             -------------------cccc-------cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCch
Confidence                               0011       13999999999999999999999997 47999999999998777776665


Q ss_pred             -ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccC-CccccCceEEEccCCcE
Q 008787          432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVV  509 (553)
Q Consensus       432 -~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~-g~~~TGD~g~~~~dG~l  509 (553)
                       ....+++|+|+|+++++|+| ++++ .+.+ |++|||+|+||+++.||+++|+.+.+.|.+ |||+|||+|++|+||++
T Consensus       341 ~~~~~~~~G~~~pg~~v~Ivd-~~~~-~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l  417 (534)
T COG0318         341 LLAKPGSVGRPLPGVEVRIVD-PDGG-EVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYL  417 (534)
T ss_pred             hhhcCCcccccCCCcEEEEEe-CCCC-ccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccE
Confidence             33457789999999999999 5554 3333 789999999999999999999999998865 99999999999999999


Q ss_pred             EEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       510 ~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|+||.+|+|+. +|++|+|.|||+++.+||.|.+|+|+|+++
T Consensus       418 ~i~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd  459 (534)
T COG0318         418 YIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPD  459 (534)
T ss_pred             EEEeccceEEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCC
Confidence            999999999995 999999999999999999999999999986

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=2e-65  Score=517.16  Aligned_cols=435  Identities=21%  Similarity=0.260  Sum_probs=358.4

Q ss_pred             ccHHHHHHHHHHc-CCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHH
Q 008787           42 NTAWDIFSMSVQK-YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        42 ~~l~~~l~~~a~~-~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~-~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      |--.++++++.+. .+++.|+++.   +...+. +++||+||.+.+.++|+.|++ .|+ +||+|++++|+.++.++++|
T Consensus         9 N~~~n~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~L   83 (528)
T COG0365           9 NLALNALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALL   83 (528)
T ss_pred             echhhhhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHH
Confidence            3334568888764 5789999997   444344 899999999999999999997 578 99999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhcccc-ccc-cCccEEEEecCCchHHHHHHhhCCcee
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-RSA-QRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (553)
                      ||+++|++.+|+.+..+++++...+++++++++|+.+........... ... .....++++....              
T Consensus        84 A~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~--------------  149 (528)
T COG0365          84 ATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG--------------  149 (528)
T ss_pred             HHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc--------------
Confidence            999999999999999999999999999999999998876554322111 000 0000123322211              


Q ss_pred             eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchh-hhccccCCCCCCcEEEEecChH
Q 008787          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKMTVDDVYLSFLPLA  276 (553)
Q Consensus       198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~  276 (553)
                      ..|.++..... ......+.+.+|+++++|||||||+||+|+++|..++........ .+     .+..+|++++..++.
T Consensus       150 ~~~~~~~~~~~-~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~-----~~~~~Dv~w~~ad~G  223 (528)
T COG0365         150 LWYDEAVEKAS-EKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHG-----DLLPGDRFWNSSDPG  223 (528)
T ss_pred             ccHHHHhhccC-CCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhh-----CCCCCCEEEeCCCch
Confidence            56777766542 233344478999999999999999999999999977766655443 33     667999999999999


Q ss_pred             HHHHHHH-HHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 008787          277 HILDRVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (553)
Q Consensus       277 ~~~g~~~-~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (553)
                      |..|+.. .+.++..|++++++++    +++.+++.|+++++|++++.|+.++.|.+.-.                    
T Consensus       224 W~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~--------------------  283 (528)
T COG0365         224 WIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL--------------------  283 (528)
T ss_pred             hhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC--------------------
Confidence            9999987 6778999999999876    28999999999999999999999999865211                    


Q ss_pred             HHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC
Q 008787          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (553)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~  431 (553)
                                       .+++++        ++||.+.++|+|++++..+|+.+.+|++|.+.||+||+|++.....+ .
T Consensus       284 -----------------~~~~dl--------ssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~  337 (528)
T COG0365         284 -----------------GEPYDL--------SSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-P  337 (528)
T ss_pred             -----------------cccccc--------hhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-C
Confidence                             223333        49999999999999999999999999999999999999966555544 3


Q ss_pred             ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecC--CccccccCChhhhhhhccCCccccCceEEEccCCcE
Q 008787          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV  509 (553)
Q Consensus       432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~--~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l  509 (553)
                      ... ++.|.|+||+++.++| +++  .++++++ |+|.++.+  .++.+||++|+.+.+++.+.||.|||.+++|+||++
T Consensus       338 ~~~-g~~g~p~pG~~~~vvd-d~g--~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~DedGy~  412 (528)
T COG0365         338 VKN-GSSGLPLPGYAVRRVD-DEG--NPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYF  412 (528)
T ss_pred             cCC-CCCCCCCCCceeEEEC-CCC--CcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEccCCCE
Confidence            333 5669999999999999 664  4444557 99999986  889999999999999986669999999999999999


Q ss_pred             EEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCCC
Q 008787          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSVS  553 (553)
Q Consensus       510 ~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~~  553 (553)
                      ||+||.||+|++ .|+++.+.|||++|.+||.|.||+|||.|+.
T Consensus       413 ~i~GR~DDvI~v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~  455 (528)
T COG0365         413 WLHGRSDDVIKV-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDP  455 (528)
T ss_pred             EEEeeccceEec-cCeeccHHHHHHHHHhCcceeeeEEEeccCC
Confidence            999999999997 7999999999999999999999999999873

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.3e-62  Score=526.15  Aligned_cols=462  Identities=18%  Similarity=0.222  Sum_probs=354.0

Q ss_pred             CCcccHHHHHHHHHHc--CCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 008787           39 SDLNTAWDIFSMSVQK--YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (553)
Q Consensus        39 ~~~~~l~~~l~~~a~~--~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~  116 (553)
                      ...+...++|+++++.  +|+++|+++.   ....+..+++||+||.+++.++|+.|+++|+++||+|+++++|++++++
T Consensus        56 ~~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~  132 (647)
T PTZ00237         56 GELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLI  132 (647)
T ss_pred             CeeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Confidence            3457788899888865  7999999875   3222334789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchh---------hhhhhccccccccCccEEEEecCCc---h
Q 008787          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK---------VKELLSPDCRSAQRLRVMVCFTSLT---A  184 (553)
Q Consensus       117 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~---~  184 (553)
                      ++|||+++|++++|+++..+++++.+++++++++++|+++..         ...+.+...........++.+....   .
T Consensus       133 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~  212 (647)
T PTZ00237        133 AMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSE  212 (647)
T ss_pred             HHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccc
Confidence            999999999999999999999999999999999999997521         1112111110101122344331110   0


Q ss_pred             HHHHH--HhhCCceeeeHHHHHhccc----ccccccCCCCCCCeEEEEecCCCCCCCceEEeccHh-HHHHHhhchhhhc
Q 008787          185 EQKEM--AVQTGIKPYSWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLD  257 (553)
Q Consensus       185 ~~~~~--~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~-l~~~~~~~~~~~~  257 (553)
                      .....  ..........|++++....    ..........++++++|+|||||||.||+|+++|.+ +..........+ 
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-  291 (647)
T PTZ00237        213 SDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII-  291 (647)
T ss_pred             cccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc-
Confidence            00000  0000012345666654321    111223345788999999999999999999999998 443332222222 


Q ss_pred             cccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCC-------hHHHHHHhhhhcCcEEeechHHHHHHHHHH
Q 008787          258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD-------LNALRDDLMELKPTLLAGVPRVFEKIHEGI  330 (553)
Q Consensus       258 ~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~-------~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~  330 (553)
                          ....++++++..|+.|..+...++.++..|+++++.+++       +..+++.++++++|++.++|++++.|.+..
T Consensus       292 ----~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  367 (647)
T PTZ00237        292 ----EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTD  367 (647)
T ss_pred             ----CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhC
Confidence                456789999999999987666677789999999998752       678999999999999999999999886521


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCc
Q 008787          331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF  410 (553)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~  410 (553)
                      ....                                .....+++        ++||.+++||+++++++.+++++.+|++
T Consensus       368 ~~~~--------------------------------~~~~~~~l--------~~Lr~i~~~G~~l~~~~~~~~~~~~g~~  407 (647)
T PTZ00237        368 PEAT--------------------------------IIRSKYDL--------SNLKEIWCGGEVIEESIPEYIENKLKIK  407 (647)
T ss_pred             cccc--------------------------------ccccccCc--------chheEEEecCccCCHHHHHHHHHhcCCC
Confidence            1000                                00011112        4899999999999999999999999999


Q ss_pred             eEeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecC---CccccccCChhhhh
Q 008787          411 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTR  487 (553)
Q Consensus       411 i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~---~~~~gy~~~~~~~~  487 (553)
                      +++.||+||+++..+..........+++|+|+||++++|+| +++.  +++.|+.|||++++|   +++.||+++++.+.
T Consensus       408 i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~--~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~  484 (647)
T PTZ00237        408 SSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGK--ELNVNEIGEVAFKLPMPPSFATTFYKNDEKFK  484 (647)
T ss_pred             EEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCC--CCCCCCceEEEEeccCCchhhCceeCCHHHHH
Confidence            99999999998765543332223347899999999999999 6554  345678999999986   78999999999998


Q ss_pred             hhcc--CCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          488 ESII--DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       488 ~~~~--~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +.|.  +|||+|||+|++|+||+|+++||.||+|++ +|++|+|.|||++|.+||.|.+|+|+|+++
T Consensus       485 ~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~  550 (647)
T PTZ00237        485 QLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYD  550 (647)
T ss_pred             HHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEc
Confidence            8773  799999999999999999999999999997 799999999999999999999999999975

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=4e-61  Score=508.85  Aligned_cols=436  Identities=22%  Similarity=0.207  Sum_probs=348.5

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.+.|.+.++++|+++|+.+.   ..     +++||+||.++++++|+.|.+   .+||+|+++++|++++++++||
T Consensus        18 ~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA   86 (539)
T PRK06334         18 GKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFA   86 (539)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHH
Confidence            478999999999999999998753   22     379999999999999999987   3899999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++..+.+++.++++.+++++++++.+....+.+...........++.+++....            ..+
T Consensus        87 ~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~  154 (539)
T PRK06334         87 TLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LSF  154 (539)
T ss_pred             HHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------ccH
Confidence            99999999999999999999999999999999998776554432211100001123333321100            000


Q ss_pred             HHHHhc-----ccc----cccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEE
Q 008787          201 DEFLHL-----GKV----NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (553)
Q Consensus       201 ~~l~~~-----~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (553)
                      .+....     ...    .........++++++++|||||||.||+|.+||+++..........+     ++..+|++++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~  229 (539)
T PRK06334        155 WEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-----SPKEDDVMMS  229 (539)
T ss_pred             HHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCCCceEEE
Confidence            010000     000    00112235678999999999999999999999999998876655544     6778899999


Q ss_pred             ecChHHHHHHHH-HHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 008787          272 FLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (553)
Q Consensus       272 ~~p~~~~~g~~~-~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (553)
                      .+|++|.+|+.. .+.++..|+++++...  ++..+++.|+++++|++.++|.++..|++......              
T Consensus       230 ~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------  295 (539)
T PRK06334        230 FLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQE--------------  295 (539)
T ss_pred             ecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcc--------------
Confidence            999999999875 5668999999888753  89999999999999999999999999875322110              


Q ss_pred             HHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeec
Q 008787          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVC  427 (553)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~  427 (553)
                                                     ...++||.+++||+++++++.+++.+.+ ++.+++.||+||++.+++..
T Consensus       296 -------------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~  344 (539)
T PRK06334        296 -------------------------------SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITIN  344 (539)
T ss_pred             -------------------------------cccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEec
Confidence                                           0114899999999999999999999988 68899999999998776655


Q ss_pred             cCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc--cCCccccCceEEEcc
Q 008787          428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDGWFHTGDIGQILP  505 (553)
Q Consensus       428 ~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~--~~g~~~TGD~g~~~~  505 (553)
                      .........++|+|+++++++++| ++++ .++++|+.|||+|+|++++.||+++++.+....  .+|||+|||+|++|+
T Consensus       345 ~~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~  422 (539)
T PRK06334        345 TVNSPKHESCVGMPIRGMDVLIVS-EETK-VPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDR  422 (539)
T ss_pred             cCCCCCCCCcCceecCCCEEEEEc-CCCC-ccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECC
Confidence            443333346799999999999998 4333 566778999999999999999999998654332  367999999999999


Q ss_pred             CCcEEEEecccCceecCCceeecchhHHHHHhcCcCcce------EEEEecCC
Q 008787          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED------VSISYSSV  552 (553)
Q Consensus       506 dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~------~~V~g~~~  552 (553)
                      ||++++.||.+|+|++ +|++|+|.|||++|.+||+|.+      ++|+|.++
T Consensus       423 ~G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~  474 (539)
T PRK06334        423 HGELFLKGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPG  474 (539)
T ss_pred             CCeEEEEeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCC
Confidence            9999999999999997 8999999999999999999998      88888764

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=4e-61  Score=512.45  Aligned_cols=442  Identities=21%  Similarity=0.195  Sum_probs=351.2

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      .-++.++|.+.++++|+++|+++.    +     +.+||.||.+++.++|.+|.++|+++||+|+++++|+++++++++|
T Consensus         6 ~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la   76 (563)
T PLN02860          6 QAHICQCLTRLATLRGNAVVTISG----N-----RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLA   76 (563)
T ss_pred             hhHHHHHHHHHHHhcCCceEEecC----C-----ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            368999999999999999999753    2     4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++.++.+++.++++.+++++++++...............+....++..++........    ......+
T Consensus        77 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~  152 (563)
T PLN02860         77 VACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIF----LNSFLTT  152 (563)
T ss_pred             HhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccc----hhhcccc
Confidence            999999999999999999999999999999999987643222111111222233333333221000000    0001111


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                      +++...............++++++++|||||||.||+|++||.++..........+     ++..+|+++...|++|.+|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~g  227 (563)
T PLN02860        153 EMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-----GYGEDDVYLHTAPLCHIGG  227 (563)
T ss_pred             chhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-----CCCCCCEEEEecCchhhcc
Confidence            22111110011111233578999999999999999999999999987766554444     6778899999999999999


Q ss_pred             HHHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcc
Q 008787          281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (553)
Q Consensus       281 ~~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (553)
                      +...+.++..|+++++.+. ++..+++.++++++|++.++|.++..|++.......                        
T Consensus       228 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~------------------------  283 (563)
T PLN02860        228 LSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMT------------------------  283 (563)
T ss_pred             HHHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhc------------------------
Confidence            8877888999999888776 999999999999999999999999998753211100                        


Q ss_pred             CCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCC-------
Q 008787          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-------  431 (553)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~-------  431 (553)
                                         ....+++|.+++||+++++++.+.+++.| +.++++.||+||+++.++......       
T Consensus       284 -------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~  344 (563)
T PLN02860        284 -------------------WKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPK  344 (563)
T ss_pred             -------------------cccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccch
Confidence                               00114899999999999999999999988 789999999999886544321111       


Q ss_pred             ---------------ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCcc
Q 008787          432 ---------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF  495 (553)
Q Consensus       432 ---------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~  495 (553)
                                     .....++|+|+|++++++++ ++       +++.|||+|+|++++.||+++++.+.+.+ .+|||
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~-~~-------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~  416 (563)
T PLN02860        345 QTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL-DE-------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWL  416 (563)
T ss_pred             hhhhhhcccccccccccCCcccCCccCCcEEEEec-CC-------CCceeEEEEecCcccccccCCccccchhccCCCeE
Confidence                           11123689999999999998 43       45789999999999999999999998888 68999


Q ss_pred             ccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       496 ~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|||+|++|+||++++.||.+|+|++ +|++++|.+||+++.+||+|.+|+|+|.++
T Consensus       417 ~TGDl~~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~  472 (563)
T PLN02860        417 DTGDIGWIDKAGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPD  472 (563)
T ss_pred             EccceEEEcCCCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEec
Confidence            99999999999999999999999997 899999999999999999999999999865

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=6.2e-61  Score=518.00  Aligned_cols=456  Identities=16%  Similarity=0.186  Sum_probs=354.0

Q ss_pred             cccHHHHHHHHHH-cCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           41 LNTAWDIFSMSVQ-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        41 ~~~l~~~l~~~a~-~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      .+...++|+++++ .+|+++|+++.   ....+..+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|
T Consensus        87 ~N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~l  163 (666)
T PLN02654         87 TNICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAML  163 (666)
T ss_pred             eeHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3555788888876 48999999875   3333445789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhh---------hcccccc---ccCccEEEEecCCchHHH
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL---------LSPDCRS---AQRLRVMVCFTSLTAEQK  187 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~---------~~~~~~~---~~~~~~~~~~~~~~~~~~  187 (553)
                      ||+++|++++|+++..+++++..++++++++++|+++......         .......   ......++..........
T Consensus       164 A~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (666)
T PLN02654        164 ACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKR  243 (666)
T ss_pred             HHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccc
Confidence            9999999999999999999999999999999999987643211         0000000   011112222221110000


Q ss_pred             HHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHH-hhchhhhccccCCCCCC
Q 008787          188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV-SGVDLFLDQFEDKMTVD  266 (553)
Q Consensus       188 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~-~~~~~~~~~~~~~~~~~  266 (553)
                      ............|+++.... ....+......+++++|+|||||||.||||+++|.+++... ......+     ++..+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~-----~~~~~  317 (666)
T PLN02654        244 EDTKWQEGRDVWWQDVVPNY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF-----DYKPT  317 (666)
T ss_pred             cccccccCCcccHHHHhhcC-CCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc-----CCCCC
Confidence            00000001123355554322 11122233577999999999999999999999999986433 3333333     67889


Q ss_pred             cEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchH
Q 008787          267 DVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (553)
Q Consensus       267 ~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~  340 (553)
                      |++++..|+.|..|+.. ++.+++.|++++++++     ++..+++.|+++++|++.++|+++..|.+.....       
T Consensus       318 d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------  390 (666)
T PLN02654        318 DVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEY-------  390 (666)
T ss_pred             cEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccc-------
Confidence            99999999999999765 5678999999999864     6899999999999999999999999886521100       


Q ss_pred             HHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC---CceEeeecc
Q 008787          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGL  417 (553)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~i~~~YG~  417 (553)
                                                  ...+++        ++||.++++|+++++++.+++.+.+|   +++.+.||+
T Consensus       391 ----------------------------~~~~~l--------~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~  434 (666)
T PLN02654        391 ----------------------------VTRHSR--------KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ  434 (666)
T ss_pred             ----------------------------cccCCh--------hheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccc
Confidence                                        011112        38999999999999999999999887   689999999


Q ss_pred             ccCCCceeeccCCC-ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEec--CCccccccCChhhhhhhc---c
Q 008787          418 TETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---I  491 (553)
Q Consensus       418 tE~g~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~--~~~~~gy~~~~~~~~~~~---~  491 (553)
                      ||+|+......+.. ...++++|+|+||++++|+| +++..  ++.++.|||+|++  |.++.||+++++.+.+.+   .
T Consensus       435 TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~--~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~  511 (666)
T PLN02654        435 TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKE--IEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPF  511 (666)
T ss_pred             cccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCC--CCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcC
Confidence            99987665443322 34558999999999999999 65543  4456789999999  789999999999888765   3


Q ss_pred             CCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       492 ~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|||+|||+|++|+||+++++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus       512 ~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d  571 (666)
T PLN02654        512 AGYYFSGDGCSRDKDGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEH  571 (666)
T ss_pred             CCEEEeCceEEECCCCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEc
Confidence            899999999999999999999999999997 799999999999999999999999999876

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.7e-60  Score=512.82  Aligned_cols=456  Identities=23%  Similarity=0.285  Sum_probs=361.1

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|.++++++|+++|+++... ++..+..+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++||
T Consensus        24 ~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA  102 (632)
T PRK07529         24 PASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG  102 (632)
T ss_pred             CCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            36899999999999999999987411 11122347899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhh-----hhhhccccccccCccEEEEecCCchH--HHHHHh--
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAE--QKEMAV--  191 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--  191 (553)
                      |+++| +++|+++.++++++.++++.++++++|++....     ..+.... ...+....++.++.....  ......  
T Consensus       103 ~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~  180 (632)
T PRK07529        103 GEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVL-AALPELRTVVEVDLARYLPGPKRLAVPL  180 (632)
T ss_pred             HHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHH-hcCCcceeEEEecCcccccccccccccc
Confidence            99999 568999999999999999999999999975432     1221111 122344555555432100  000000  


Q ss_pred             ---hCCceeeeHHHHHhcccccc-cccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCc
Q 008787          192 ---QTGIKPYSWDEFLHLGKVNE-MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD  267 (553)
Q Consensus       192 ---~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~  267 (553)
                         ....+...|.+.+....... .......++++++++|||||||.||+|.+||.+++..+......+     .+..++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~~d  255 (632)
T PRK07529        181 IRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-----GLGPGD  255 (632)
T ss_pred             cccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-----CCCCCC
Confidence               01123445665554432221 112234678999999999999999999999999998877665555     567899


Q ss_pred             EEEEecChHHHHHHHH-HHHHHHcCcEEEEecC----C---hHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhch
Q 008787          268 VYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP  339 (553)
Q Consensus       268 ~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~----~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~  339 (553)
                      ++++.+|++|.+++.. ++.++..|+++++.+.    +   ...+++.++++++|++.++|+++..|++...        
T Consensus       256 ~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--------  327 (632)
T PRK07529        256 TVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV--------  327 (632)
T ss_pred             EEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc--------
Confidence            9999999999999875 6678999999998753    2   3678899999999999999999998864210        


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeecccc
Q 008787          340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE  419 (553)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE  419 (553)
                                                    +..++        +++|.+++||+++++++.+.+++.+|+++++.||+||
T Consensus       328 ------------------------------~~~~~--------~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE  369 (632)
T PRK07529        328 ------------------------------DGHDI--------SSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTE  369 (632)
T ss_pred             ------------------------------cCCCc--------cceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccc
Confidence                                          00011        4899999999999999999999999999999999999


Q ss_pred             CCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCC--CCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccc
Q 008787          420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY--SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH  496 (553)
Q Consensus       420 ~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~--~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~  496 (553)
                      ++.++..+........+++|.|+|+.+++++..++++.  .+++.|+.|||+|+||+++.||++++. +...| .+|||+
T Consensus       370 ~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~~  448 (632)
T PRK07529        370 ATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWLN  448 (632)
T ss_pred             cCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCcc-ccccccCCCceE
Confidence            98877666544444568999999999999976344332  566778999999999999999998654 44555 789999


Q ss_pred             cCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       497 TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |||+|++|+||++++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus       449 TGDlg~~d~dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d  503 (632)
T PRK07529        449 TGDLGRIDADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPD  503 (632)
T ss_pred             cCcEEEEcCCceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccC
Confidence            9999999999999999999999996 899999999999999999999999999875

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=3.4e-60  Score=509.55  Aligned_cols=439  Identities=22%  Similarity=0.289  Sum_probs=347.5

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.+.|.++++++|+++|+++.   + ..+.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus        38 ~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA  113 (614)
T PRK08180         38 PRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALA  113 (614)
T ss_pred             CccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence            578999999999999999999864   2 234467899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCC-----hhHHHHHHhhcCceEEEEcchh-hhhhhccccccccCccEEEEecCCchHHHHHHhhCC
Q 008787          121 CNALSLICVPLYDTLG-----PGAVNFILDHAEIDFVFVQDKK-VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (553)
                      |+++|++++|+++.++     .+++.++++.++++++|++... ..........  .. ..++.......         .
T Consensus       114 ~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~-~~~i~~~~~~~---------~  181 (614)
T PRK08180        114 AMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--AD-VEVVAVRGAVP---------G  181 (614)
T ss_pred             HHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CC-ceEEEecCCCC---------C
Confidence            9999999999999988     7899999999999999998642 1111111111  11 12222222100         0


Q ss_pred             ceeeeHHHHHhcccccc--cccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCC--CCcEEE
Q 008787          195 IKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT--VDDVYL  270 (553)
Q Consensus       195 ~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~--~~~~~~  270 (553)
                      ....+|.++........  .......++++++|+|||||||.||+|++||+++...+......+     ...  .+++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~~l  256 (614)
T PRK08180        182 RAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-----PFLAEEPPVLV  256 (614)
T ss_pred             cccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-----cccCCCCcEEE
Confidence            01245666554321111  111234678999999999999999999999999998877655444     332  568999


Q ss_pred             EecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHH
Q 008787          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (553)
Q Consensus       271 ~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~  344 (553)
                      +++|++|.+|+.. ++.+++.|+++++.++     ++..+++.++++++|+++++|.++..|++.+.....         
T Consensus       257 ~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~---------  327 (614)
T PRK08180        257 DWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAA---------  327 (614)
T ss_pred             EecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchh---------
Confidence            9999999999865 5568999999988763     345788999999999999999999998764322110         


Q ss_pred             HHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHh----cC--CceEeeeccc
Q 008787          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC--AFLVQGYGLT  418 (553)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~----~~--~~i~~~YG~t  418 (553)
                                                      ..+..++++|.+++||+++++++.+.+++.    +|  +++++.||+|
T Consensus       328 --------------------------------~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~T  375 (614)
T PRK08180        328 --------------------------------LRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMT  375 (614)
T ss_pred             --------------------------------hhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeeccc
Confidence                                            011122589999999999999999998874    33  6799999999


Q ss_pred             cCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCcccc
Q 008787          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT  497 (553)
Q Consensus       419 E~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~T  497 (553)
                      |++.+++...... ..++++|+|+||+++++++ +         +..|||+|+|++++.||+++|+.+.+.| .||||+|
T Consensus       376 E~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~d-~---------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~T  444 (614)
T PRK08180        376 ETAPSATFTTGPL-SRAGNIGLPAPGCEVKLVP-V---------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS  444 (614)
T ss_pred             ccCCceEeccccc-CCCCcccCccCCcEEEEec-C---------CCCcEEEEecCccchhhcCChhHhHhhcccCCceec
Confidence            9987766543332 3458999999999999998 3         2469999999999999999999999988 6899999


Q ss_pred             CceEEE----ccCCcEEEEecccCceecCCceeec--chhHHHHHhcCcCcceEEEEecCC
Q 008787          498 GDIGQI----LPNGVVKIIDRKKNLIKISQGEYVA--LEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       498 GD~g~~----~~dG~l~~~GR~~d~i~~~~G~~~~--~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ||+|++    |+||+|+|+||.+|+|++++|++++  |.|+|.++.+||.|.+|+|+|.++
T Consensus       445 GDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~  505 (614)
T PRK08180        445 GDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDR  505 (614)
T ss_pred             cceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCC
Confidence            999999    4689999999999999877899777  778889999999999999999875

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=2.6e-60  Score=511.79  Aligned_cols=455  Identities=17%  Similarity=0.167  Sum_probs=355.5

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ..+...++|.++++.+|+++|+++.   +..++..+++||+||.+++.++|++|+++|+++||+|+++++|++++++++|
T Consensus        50 ~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~l  126 (628)
T TIGR02316        50 RTNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAML  126 (628)
T ss_pred             EeeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3566678898899899999999875   4334455789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhh---------hhhhccccccccCccEEEEecCCchHHHHHH
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMA  190 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (553)
                      ||+++|++++|+++.++.+++.+++++++++++|+++...         ..+..+..........++.++......    
T Consensus       127 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----  202 (628)
T TIGR02316       127 ACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM----  202 (628)
T ss_pred             HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----
Confidence            9999999999999999999999999999999999976421         111111111112234455554321100    


Q ss_pred             hhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHH-HhhchhhhccccCCCCCCcEE
Q 008787          191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTVDDVY  269 (553)
Q Consensus       191 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~-~~~~~~~~~~~~~~~~~~~~~  269 (553)
                      .........|.++.........+.....++++++|+|||||||.||||+++|.+++.. .......+     ++..+|++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~  277 (628)
T TIGR02316       203 RLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF-----GIRAGQVM  277 (628)
T ss_pred             CcccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCcEE
Confidence            0000112456665544322222223346789999999999999999999999997643 33333333     67788999


Q ss_pred             EEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHH
Q 008787          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (553)
Q Consensus       270 ~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~  343 (553)
                      ++..|+.|..|+.. .+.++..|+++++.++     ++..+++.++++++|+++++|++++.|.+....           
T Consensus       278 ~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----------  346 (628)
T TIGR02316       278 FSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA-----------  346 (628)
T ss_pred             EEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCc-----------
Confidence            99999999998754 6678999999999764     688999999999999999999999887542100           


Q ss_pred             HHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCc
Q 008787          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP  423 (553)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~  423 (553)
                                              .....++        ++||.+++||+++++++.+++++.++..+++.||+||++..
T Consensus       347 ------------------------~~~~~~l--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~  394 (628)
T TIGR02316       347 ------------------------WLRKHDL--------SSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWP  394 (628)
T ss_pred             ------------------------ccccCCc--------cceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCce
Confidence                                    0011111        48999999999999999999999899999999999999864


Q ss_pred             eeeccCC---CccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecC---CccccccCChhhhhhhc----cCC
Q 008787          424 TTVCFPD---EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----IDG  493 (553)
Q Consensus       424 ~~~~~~~---~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~---~~~~gy~~~~~~~~~~~----~~g  493 (553)
                      .+.....   .....+++|+|+||++++|+| ++++ .+++.|+.|||+++||   ..+.+|+++++.+.+.+    .++
T Consensus       395 ~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g-~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~  472 (628)
T TIGR02316       395 VLAIMPGLDLKPVKLGSPGLPMYGYHLRVLD-EATG-RPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRP  472 (628)
T ss_pred             eecCCCCCCcCCCCCCCcccCcCCceEEEEE-CCCC-CCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCC
Confidence            4433221   123347889999999999999 5322 4455678999999998   46789999988776654    467


Q ss_pred             ccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       494 ~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ||+|||+|++|+||+++++||.||+|++ +|++|+|.|||++|.+||+|.||+|+|+++
T Consensus       473 ~~~TGD~g~~d~dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d  530 (628)
T TIGR02316       473 LYSSFDWGIRDEDGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHD  530 (628)
T ss_pred             EEECCceEEEcCCCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeec
Confidence            9999999999999999999999999997 899999999999999999999999999875

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=3.8e-60  Score=511.26  Aligned_cols=453  Identities=18%  Similarity=0.235  Sum_probs=359.3

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ..+...++|+++++++|+++|+++.   +...+..+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|
T Consensus        55 ~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l  131 (625)
T TIGR02188        55 ELNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAML  131 (625)
T ss_pred             EEEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3467788888899999999999986   3324456799999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhh---------hhhcccccccc-CccEEEEecCCchHHHHH
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQ-RLRVMVCFTSLTAEQKEM  189 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  189 (553)
                      ||+++|++++|+++..+.+++.++++.++++++|+++....         .+.+... ..+ .+..++.+........  
T Consensus       132 A~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--  208 (625)
T TIGR02188       132 ACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALE-KCPVSVEHVLVVRRTGNPVP--  208 (625)
T ss_pred             HHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHH-hCCCCccEEEEEcCCCCCcC--
Confidence            99999999999999999999999999999999999875321         1111111 112 3444554433211000  


Q ss_pred             HhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhh-chhhhccccCCCCCCcE
Q 008787          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDV  268 (553)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~  268 (553)
                        ........|++++.... .........++++++|+|||||||.||+|+++|.+++..... ....+     ++..+|+
T Consensus       209 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~  280 (625)
T TIGR02188       209 --WVEGRDVWWHDLMAKAS-AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF-----DIKDGDI  280 (625)
T ss_pred             --ccccccccHHHHHhhcC-CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc-----CCCCCcE
Confidence              00011234556554421 222333457789999999999999999999999998755433 22222     6778899


Q ss_pred             EEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHH
Q 008787          269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (553)
Q Consensus       269 ~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~  342 (553)
                      +++..|++|..+... ++.++..|+++++.++     ++..+++.++++++|++.++|++++.|.+.....         
T Consensus       281 ~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------  351 (625)
T TIGR02188       281 FWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW---------  351 (625)
T ss_pred             EEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc---------
Confidence            999999999988764 6668999999998763     6899999999999999999999999886531110         


Q ss_pred             HHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC---CceEeeecccc
Q 008787          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE  419 (553)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~i~~~YG~tE  419 (553)
                                                .+..++        ++||.+++||+++++++.+++.+.++   +++++.||+||
T Consensus       352 --------------------------~~~~~l--------~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE  397 (625)
T TIGR02188       352 --------------------------VKKHDL--------SSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTE  397 (625)
T ss_pred             --------------------------cccCCc--------cceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccc
Confidence                                      011111        48999999999999999999998885   78999999999


Q ss_pred             CCCceeeccCC-CccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEec--CCccccccCChhhhhhhc---cCC
Q 008787          420 TCGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDG  493 (553)
Q Consensus       420 ~g~~~~~~~~~-~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~--~~~~~gy~~~~~~~~~~~---~~g  493 (553)
                      +|+.++..... ....++++|+|++|++++++| +++...+ +.|+.|||+|+|  |+++.||+++++.+.+.+   .+|
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~-~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g  475 (625)
T TIGR02188       398 TGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVE-GPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPG  475 (625)
T ss_pred             cCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCC-CCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCC
Confidence            98876654332 233458899999999999999 6554332 267899999999  689999999998887765   478


Q ss_pred             ccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       494 ~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ||+|||+|++|+||+++++||.+|+|++ +|++++|.+||++|.+||.|.||+|+|.++
T Consensus       476 ~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~  533 (625)
T TIGR02188       476 YYFTGDGARRDKDGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPD  533 (625)
T ss_pred             EEECCceEEEcCCCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEc
Confidence            9999999999999999999999999997 799999999999999999999999999865

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.4e-60  Score=507.49  Aligned_cols=465  Identities=23%  Similarity=0.272  Sum_probs=355.4

Q ss_pred             CCCCCCCCcceeccc----cCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHH
Q 008787           15 KDGKPSVGPVYRNLL----ASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIV   90 (553)
Q Consensus        15 ~~~~~~~~~~~r~~~----~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la   90 (553)
                      -.-+|...+.+|...    .-.+++.. ....++.++|+++++++|+++|+++.   +...+.++.+||+||.++++++|
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA   94 (624)
T PRK12582         19 LNWKPPDISVERRADGSIVIKSRHPLG-PYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALA   94 (624)
T ss_pred             cccCCCceEEEEcCCceEEEecCCCCC-CcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHH
Confidence            344566666676642    22233322 34578999999999999999999865   32245568999999999999999


Q ss_pred             HHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCCh-----hHHHHHHhhcCceEEEEcchh-hhhhhc
Q 008787           91 SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP-----GAVNFILDHAEIDFVFVQDKK-VKELLS  164 (553)
Q Consensus        91 ~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~i~~~~~~-~~~~~~  164 (553)
                      ++|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.     +++.++++.++++++|++... ......
T Consensus        95 ~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  174 (624)
T PRK12582         95 QALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALA  174 (624)
T ss_pred             HHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999875     899999999999999998642 111112


Q ss_pred             cccccccCccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccc--cccCCCCCCCeEEEEecCCCCCCCceEEecc
Q 008787          165 PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTH  242 (553)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th  242 (553)
                      ....  ... .++.++....         ......+.++........  .......++++++|+|||||||.||+|++||
T Consensus       175 ~~~~--~~~-~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th  242 (624)
T PRK12582        175 ALDL--LDV-TVVHVTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQ  242 (624)
T ss_pred             hhhh--cCc-eEEEEcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeH
Confidence            1111  112 2333332110         011234555544321110  1112346789999999999999999999999


Q ss_pred             HhHHHHHhhchhhhccccCCCC---CCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcC
Q 008787          243 ETIATFVSGVDLFLDQFEDKMT---VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKP  313 (553)
Q Consensus       243 ~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~  313 (553)
                      +++...........     ...   ..+++++++|++|.+|+.. ++.++..|+++++.+.     ....+++.++++++
T Consensus       243 ~~l~~~~~~~~~~~-----~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~  317 (624)
T PRK12582        243 RMMCANIAMQEQLR-----PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISP  317 (624)
T ss_pred             HHHHHHHHHHHHhc-----cccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCC
Confidence            99988766543332     222   2579999999999999876 4457888999988753     23456788899999


Q ss_pred             cEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCC
Q 008787          314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA  393 (553)
Q Consensus       314 t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~  393 (553)
                      |+++++|.++..|.+.+....                                 .....++        ++||.+++||+
T Consensus       318 t~~~~vP~~~~~l~~~~~~~~---------------------------------~~~~~~~--------~slr~i~~gGa  356 (624)
T PRK12582        318 TVYGNVPAGYAMLAEAMEKDD---------------------------------ALRRSFF--------KNLRLMAYGGA  356 (624)
T ss_pred             eEEeccCHHHHHHHHHHhhCH---------------------------------HHHHHHh--------hheeEEEecCC
Confidence            999999999998865432211                                 0111112        38999999999


Q ss_pred             CCCHHHHHHHHHhc------CCceEeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCe
Q 008787          394 PLSTEVEEFLRVTC------CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE  467 (553)
Q Consensus       394 ~l~~~~~~~~~~~~------~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Ge  467 (553)
                      ++++++.+++++.+      ++++++.||+||++.++...... ....+++|+|+||+++++++          .|+.||
T Consensus       357 ~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~svG~p~pg~~v~i~~----------~G~~GE  425 (624)
T PRK12582        357 TLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWD-TERVGLIGLPLPGVELKLAP----------VGDKYE  425 (624)
T ss_pred             CCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCC-CCCCCCCCcCCCCcEEEEcc----------CCCceE
Confidence            99999999998863      36799999999998766533222 23457999999999999976          457899


Q ss_pred             EEEecCCccccccCChhhhhhhc-cCCccccCceEEE-c---cCCcEEEEecccCceecCCceeecchhHH--HHHhcCc
Q 008787          468 VCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI-L---PNGVVKIIDRKKNLIKISQGEYVALEYLE--NVYCVAP  540 (553)
Q Consensus       468 i~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~-~---~dG~l~~~GR~~d~i~~~~G~~~~~~~iE--~~l~~~p  540 (553)
                      |+|+|++++.||+++|+.+.+.| .||||+|||+|++ |   +||+|+++||.+|+|++++|++|+|.+||  .++.+||
T Consensus       426 l~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p  505 (624)
T PRK12582        426 VRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSP  505 (624)
T ss_pred             EEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCc
Confidence            99999999999999999999988 6899999999998 4   46999999999999998789999998885  6778999


Q ss_pred             CcceEEEEecCC
Q 008787          541 IIEDVSISYSSV  552 (553)
Q Consensus       541 ~V~~~~V~g~~~  552 (553)
                      .|.+|+|+|+++
T Consensus       506 ~V~~a~VvG~~~  517 (624)
T PRK12582        506 VIHDAVVAGQDR  517 (624)
T ss_pred             chheEEEEcCCC
Confidence            999999999875

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4.5e-62  Score=451.08  Aligned_cols=436  Identities=20%  Similarity=0.221  Sum_probs=375.7

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|..+|+++||++|+++.    +     +.+||+||.++++++|..|++.||++||+|.+.+||..+|++++||
T Consensus        27 d~~l~d~L~~~A~~~pdriAv~d~----~-----~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FA   97 (542)
T COG1021          27 DRTLTDILTDHAARYPDRIAVIDG----E-----RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFA   97 (542)
T ss_pred             CCcHHHHHHHHHhhcCCceEEecC----c-----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHH
Confidence            588999999999999999999853    2     5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchh----hhhhhccccccccCccEEEEecCCchHHHHHHhhCCce
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK----VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (553)
                      ++++|..+|+.-|.....||.++.....++.+|+++..    ...+.+....+.+.++.+++.++....           
T Consensus        98 LlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~-----------  166 (542)
T COG1021          98 LLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP-----------  166 (542)
T ss_pred             HHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc-----------
Confidence            99999999999899899999999999999999887653    122333333455778888888655321           


Q ss_pred             eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChH
Q 008787          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (553)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  276 (553)
                      ...+..+.... ....+..+.++++++++..+.||||.||.|..||..+..++....+.+     ++...+++++.+|..
T Consensus       167 ~~~~~~~~~~a-~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-----~~~~~tvyL~~LP~A  240 (542)
T COG1021         167 SVLEAALCHPA-GLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-----GFDQQTVYLCALPAA  240 (542)
T ss_pred             chhhhhhhCcc-ccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-----CcCccceEEEecccc
Confidence            11222232222 334456677888999999999999999999999999999999888888     899999999999999


Q ss_pred             HHHHHHH--HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 008787          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (553)
Q Consensus       277 ~~~g~~~--~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      |.+.++.  .+..++.|+++|+.+. +++.-+.+|+++++|+...+|.+...+++.....                    
T Consensus       241 HNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~--------------------  300 (542)
T COG1021         241 HNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWE--------------------  300 (542)
T ss_pred             cCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcc--------------------
Confidence            9999985  6678999999999876 9999999999999999999999999888754432                    


Q ss_pred             HHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC-c
Q 008787          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-M  432 (553)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-~  432 (553)
                                       +.++        +|||.+-+||+.+++++.+++...+|+.+.+.|||.| |.+.+++.++. .
T Consensus       301 -----------------~~~L--------sSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAE-GLvnyTRLDDp~E  354 (542)
T COG1021         301 -----------------RADL--------SSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAE-GLVNYTRLDDPPE  354 (542)
T ss_pred             -----------------cCCc--------hheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhh-hhhcccccCCchH
Confidence                             2223        3999999999999999999999999999999999999 56666665544 3


Q ss_pred             cccCccCCCC-CCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEE
Q 008787          433 CMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK  510 (553)
Q Consensus       433 ~~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~  510 (553)
                      ....+-|+|+ |.-+++|+| .++  .++++||.|++.++||..++|||+.|+.++++| .+|||+|||+.++|+||+|.
T Consensus       355 ~i~~TQGrPlsP~DEvrvvD-~dg--~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~  431 (542)
T COG1021         355 IIIHTQGRPLSPDDEVRVVD-ADG--NPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLV  431 (542)
T ss_pred             heeecCCCcCCCcceeEEec-CCC--CCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEE
Confidence            4446778887 788999999 555  466778999999999999999999999999999 89999999999999999999


Q ss_pred             EEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       511 ~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +.||.+|.|+ ++|+||..+|||+.|.+||.|.+|++|+.++
T Consensus       432 V~GR~KDQIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampD  472 (542)
T COG1021         432 VEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPD  472 (542)
T ss_pred             EEeeehhhhc-cccchhhHHHHHHHHhhCchhhhhhhhcCch
Confidence            9999999999 7999999999999999999999999999886

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.1e-60  Score=503.17  Aligned_cols=436  Identities=20%  Similarity=0.200  Sum_probs=357.8

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~  121 (553)
                      .++.++|.++++++|+++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~  119 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA  119 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            48999999999999999999864   2      47999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHH
Q 008787          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (553)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (553)
                      +++|++++|+++.++.+++.++++.++++++|++......+... ......+..+........       ....+..+++
T Consensus       120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  191 (549)
T PRK07788        120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSAL-PPDLGRLRAWGGNPDDDE-------PSGSTDETLD  191 (549)
T ss_pred             HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhh-ccccccceEEEEecCccc-------cCCcCcccHH
Confidence            99999999999999999999999999999999998766554332 112222222222211110       0112345677


Q ss_pred             HHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHH
Q 008787          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (553)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~  281 (553)
                      ++......   ...+...++.++++|||||||.||+|.++|+++...+......+     .+..++++++..|++|.+|+
T Consensus       192 ~~~~~~~~---~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~  263 (549)
T PRK07788        192 DLIAGSST---APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-----PFRAGETTLLPAPMFHATGW  263 (549)
T ss_pred             HHhcCCCC---CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-----CCCcCCeEEEccchHHHHHH
Confidence            76654322   11223456789999999999999999999999998877665554     67788999999999999999


Q ss_pred             HHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccC
Q 008787          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (553)
Q Consensus       282 ~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (553)
                      ...+.++..|+++++... ++..+++.++++++|++.++|+++..+++.......                         
T Consensus       264 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~-------------------------  318 (549)
T PRK07788        264 AHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLA-------------------------  318 (549)
T ss_pred             HHHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccC-------------------------
Confidence            877778999999988765 999999999999999999999999988653221000                         


Q ss_pred             CcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCC
Q 008787          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (553)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~  440 (553)
                                ..        ..+++|.+++||+++++++.+++.+.++..+++.||+||++..+.....+.....+++|+
T Consensus       319 ----------~~--------~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~  380 (549)
T PRK07788        319 ----------KY--------DTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGR  380 (549)
T ss_pred             ----------CC--------CCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCccc
Confidence                      00        014899999999999999999999999999999999999987655443332334578999


Q ss_pred             CCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEecccCcee
Q 008787          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (553)
Q Consensus       441 ~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~  520 (553)
                      |+++++++++| +++.  +++.|+.|||+|+|+.++.||++++..   ...+|||+|||+|++|+||++++.||.+|+|+
T Consensus       381 ~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~  454 (549)
T PRK07788        381 PPKGVTVKILD-ENGN--EVPRGVVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIV  454 (549)
T ss_pred             CCCCcEEEEEC-CCcC--CCCCCCeEEEEEeCCCccccccCCCcc---cccCCceecCceEEEcCCCCEEEeccCcceEE
Confidence            99999999999 5554  445579999999999999999988765   23589999999999999999999999999999


Q ss_pred             cCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          521 ISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       521 ~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      + +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus       455 ~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~  485 (549)
T PRK07788        455 S-GGENVFPAEVEDLLAGHPDVVEAAVIGVDD  485 (549)
T ss_pred             E-CCEEECHHHHHHHHHhCCCeeEEEEECCcC
Confidence            6 899999999999999999999999999765

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=1.9e-59  Score=498.28  Aligned_cols=440  Identities=24%  Similarity=0.281  Sum_probs=360.5

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.+.|+++++.+|+++|+++.   +...++++.+||.||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus        23 ~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la   99 (547)
T PRK13295         23 DRTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLA   99 (547)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHH
Confidence            367999999999999999999875   43344557999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhh-----hhhhccccccccCccEEEEecCCchHHHHHHhhCCc
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (553)
                      |+++|++++|+++..+.+++.++++.++++++++++...     +.+.+ .....+....++.++...            
T Consensus       100 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------  166 (547)
T PRK13295        100 CSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARR-LRPELPALRHVVVVGGDG------------  166 (547)
T ss_pred             HHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHH-HhhhCCCcceEEEecCCC------------
Confidence            999999999999999999999999999999999987531     11111 111223344455443321            


Q ss_pred             eeeeHHHHHhccc-------ccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcE
Q 008787          196 KPYSWDEFLHLGK-------VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV  268 (553)
Q Consensus       196 ~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~  268 (553)
                       ..++.++.....       ..........++++++++|||||||.||+|+++|.++...+......+     ++..+++
T Consensus       167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~  240 (547)
T PRK13295        167 -ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-----GLGADDV  240 (547)
T ss_pred             -ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-----CCCCCCe
Confidence             113333332110       011112234678999999999999999999999999988877765555     6788999


Q ss_pred             EEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 008787          269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (553)
Q Consensus       269 ~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (553)
                      +++..|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..|........            
T Consensus       241 ~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~------------  308 (547)
T PRK13295        241 ILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESG------------  308 (547)
T ss_pred             EEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccC------------
Confidence            999999999998765 6678999999988876 89999999999999999999999988864321100            


Q ss_pred             HHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceee
Q 008787          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV  426 (553)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~  426 (553)
                                               .        ..+++|.+++||+++++++.+++.+.++.++++.||+||++.+++.
T Consensus       309 -------------------------~--------~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  355 (547)
T PRK13295        309 -------------------------R--------PVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLT  355 (547)
T ss_pred             -------------------------C--------CcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeec
Confidence                                     0        1148999999999999999999999889999999999999887665


Q ss_pred             ccCCC-ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEcc
Q 008787          427 CFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP  505 (553)
Q Consensus       427 ~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~  505 (553)
                      +.... .....++|+|+++++++++| +++  .+++.|+.|||+|+|++++.||+++++.+... .+|||+|||+|++++
T Consensus       356 ~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~~TGD~~~~~~  431 (547)
T PRK13295        356 KLDDPDERASTTDGCPLPGVEVRVVD-ADG--APLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD-ADGWFDTGDLARIDA  431 (547)
T ss_pred             cCCCcchhccCccccccCCcEEEEEC-CCC--CCCCCCCCCeEEEEcCcccccccCCccccccC-CCCCeecceEEEEcC
Confidence            54322 22346789999999999999 554  35566799999999999999999999888765 688999999999999


Q ss_pred             CCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       506 dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ||++++.||.+|+|++ +|++++|.+||++|.+||+|.+++|+|.++
T Consensus       432 ~g~l~~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~  477 (547)
T PRK13295        432 DGYIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPD  477 (547)
T ss_pred             CceEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeec
Confidence            9999999999999996 899999999999999999999999999764

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-59  Score=501.46  Aligned_cols=444  Identities=19%  Similarity=0.221  Sum_probs=365.8

Q ss_pred             CcccHHHHHHHHHH-cCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787           40 DLNTAWDIFSMSVQ-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        40 ~~~~l~~~l~~~a~-~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      .++.+.+++.+++. .+|+++|+++.   +..  ..+.+||+||.+++.++|.+|.++|+++||+|+++++|++++++++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  115 (570)
T PRK04319         41 KVNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL  115 (570)
T ss_pred             ceeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence            35666788888887 57999999876   432  3368999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceee
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (553)
                      |||+++|++++|+++..+++++.++++.+++++++++.........   ...+....++.+++...        ......
T Consensus       116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~  184 (570)
T PRK04319        116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA---DDLPSLKHVLLVGEDVE--------EGPGTL  184 (570)
T ss_pred             HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch---hcCCCceEEEEECCCcC--------CCcCcc
Confidence            9999999999999999999999999999999999998876543321   12234445555543211        011234


Q ss_pred             eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHH
Q 008787          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (553)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  278 (553)
                      ++.+++..... .....+..++++++++|||||||.||+|+++|++++..+......+     ++..+|++++..|++|.
T Consensus       185 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~  258 (570)
T PRK04319        185 DFNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-----DLHEDDVYWCTADPGWV  258 (570)
T ss_pred             CHHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-----CCCCCceEEecCChHHh
Confidence            56666544322 2233345678999999999999999999999999988777665555     67788999999999999


Q ss_pred             HHHHH-HHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 008787          279 LDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (553)
Q Consensus       279 ~g~~~-~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (553)
                      +|+.. .+.++..|+++++...  ++..+++.++++++|+++++|.+++.|.+.....                      
T Consensus       259 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------  316 (570)
T PRK04319        259 TGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDL----------------------  316 (570)
T ss_pred             hCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcc----------------------
Confidence            88765 6678999999988764  8999999999999999999999999886421100                      


Q ss_pred             HhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCcccc
Q 008787          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (553)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~  435 (553)
                                   ....++        +++|.+++||+++++++.+++++.++.++++.||+||++..+...........
T Consensus       317 -------------~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~  375 (570)
T PRK04319        317 -------------VKKYDL--------SSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKP  375 (570)
T ss_pred             -------------cccCCc--------ccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCC
Confidence                         000111        38999999999999999999999999999999999999876655443333445


Q ss_pred             CccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEec--CCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEe
Q 008787          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (553)
Q Consensus       436 ~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~--~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~G  513 (553)
                      +++|+|+|++++++++ +++...  +.|+.|||+++|  +.++.||+++++.+.+.|.+|||+|||+|++++||+++++|
T Consensus       376 ~~~G~p~~g~~~~i~d-~~~~~~--~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~l~~~G  452 (570)
T PRK04319        376 GSMGKPLPGIEAAIVD-DQGNEL--PPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQG  452 (570)
T ss_pred             CcCcCCCCCCEEEEEC-CCCCCC--CCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCeeEEEEe
Confidence            7899999999999999 655433  567999999997  89999999999999999999999999999999999999999


Q ss_pred             cccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       514 R~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |.+|+|+. +|++|+|.+||++|.+||.|.+++|+|.++
T Consensus       453 R~~d~i~~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~  490 (570)
T PRK04319        453 RVDDVIKT-SGERVGPFEVESKLMEHPAVAEAGVIGKPD  490 (570)
T ss_pred             cCCCEEEE-CCEEECHHHHHHHHhhCCCeeecceecccC
Confidence            99999997 899999999999999999999999999875

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.9e-59  Score=504.20  Aligned_cols=450  Identities=18%  Similarity=0.251  Sum_probs=355.8

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~  121 (553)
                      +...++|.++++++|+++|+++.   +...+..+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||
T Consensus        67 n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~  143 (637)
T PRK00174         67 NVSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC  143 (637)
T ss_pred             EHHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            44567888889999999999975   332234578999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhh---------hhhccccccccCccEEEEecCCchHHHHHHhh
Q 008787          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (553)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (553)
                      +++|++++|+++..+.+++.++++.++++++|+++....         .+.+.. ...+....++.+.......    ..
T Consensus       144 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~  218 (637)
T PRK00174        144 ARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEAL-ANCPSVEKVIVVRRTGGDV----DW  218 (637)
T ss_pred             HHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHH-HhCCCccEEEEEcCCCCCc----Cc
Confidence            999999999999999999999999999999999765321         111111 1123344455443321100    00


Q ss_pred             CCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhh-chhhhccccCCCCCCcEEEE
Q 008787          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLS  271 (553)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~  271 (553)
                      .......|+++.... ....+......+++++|+|||||||.||+|+++|.+++..... ....+     ++..+|++++
T Consensus       219 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~~  292 (637)
T PRK00174        219 VEGRDLWWHELVAGA-SDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-----DYKDGDVYWC  292 (637)
T ss_pred             CCCCcccHHHHHhhc-CCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-----CCCCCcEEEE
Confidence            011223455655432 2222233456789999999999999999999999998755432 22222     6677899999


Q ss_pred             ecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHH
Q 008787          272 FLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (553)
Q Consensus       272 ~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~  345 (553)
                      ..|++|..++.. .+.++..|+++++.++     ++..+++.|+++++|++.++|++++.|.+.....            
T Consensus       293 ~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------  360 (637)
T PRK00174        293 TADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEH------------  360 (637)
T ss_pred             cCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcc------------
Confidence            999999998764 6668999999998763     6899999999999999999999999886521110            


Q ss_pred             HHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC---CceEeeeccccCCC
Q 008787          346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCG  422 (553)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~i~~~YG~tE~g~  422 (553)
                                             ....+        +++||.+++||+++++++.+++.+.++   +++++.||+||++.
T Consensus       361 -----------------------~~~~~--------~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~  409 (637)
T PRK00174        361 -----------------------PKKYD--------LSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGG  409 (637)
T ss_pred             -----------------------cccCC--------ccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCC
Confidence                                   00001        148999999999999999999998875   78999999999988


Q ss_pred             ceeeccCCC-ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEec--CCccccccCChhhhhhhc---cCCccc
Q 008787          423 PTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFH  496 (553)
Q Consensus       423 ~~~~~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~  496 (553)
                      ......... ....+++|+|++|++++++| +++.  +++.|+.|||+|+|  |.++.||+++++.+.+.+   .+|||+
T Consensus       410 ~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~--~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~  486 (637)
T PRK00174        410 IMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGN--PLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYF  486 (637)
T ss_pred             ceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCC--CCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEE
Confidence            665443322 23447899999999999999 6554  34567899999999  689999999999887765   478999


Q ss_pred             cCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       497 TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |||+|++|+||++++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus       487 TGDl~~~d~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~  541 (637)
T PRK00174        487 TGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPD  541 (637)
T ss_pred             CCceEEEcCCCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEc
Confidence            9999999999999999999999997 799999999999999999999999999865

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=4e-59  Score=496.88  Aligned_cols=437  Identities=20%  Similarity=0.210  Sum_probs=346.0

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCC----CCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKF----GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~----~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~  116 (553)
                      ..|+.+.|.+.++++|+++|+++.   +..+    ..++++||+||.+++.++|++|.+.|+++||+|+++++|++++++
T Consensus         5 ~~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~   81 (552)
T PRK09274          5 MANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFA   81 (552)
T ss_pred             hhhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHH
Confidence            367889999999999999999875   3211    223479999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcch--hhhhhhccccccccCccEEEEecCCchHHHHHHhhCC
Q 008787          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK--KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (553)
Q Consensus       117 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (553)
                      +++||+++|++++|+++.++.+++.++++.++++++|++..  ....+....   ......++.++...          .
T Consensus        82 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~----------~  148 (552)
T PRK09274         82 LTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG---KPSVRRLVTVGGRL----------L  148 (552)
T ss_pred             HHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC---ccchhheecccccc----------c
Confidence            99999999999999999999999999999999999998752  222121110   01222233322210          0


Q ss_pred             ceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecC
Q 008787          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP  274 (553)
Q Consensus       195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  274 (553)
                      .....+.++...............++++++++|||||||.||+|.+||+++...+......+     ++..+++.++.+|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p  223 (552)
T PRK09274        149 WGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-----GIEPGEIDLPTFP  223 (552)
T ss_pred             cCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-----CCCCCceeeeccC
Confidence            01123444432221222223345678999999999999999999999999998887766655     6778899999999


Q ss_pred             hHHHHHHHHHHHHHHcCcEEEEec--------CChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 008787          275 LAHILDRVIEEYFFRRGASVGYYH--------GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (553)
Q Consensus       275 ~~~~~g~~~~~~~l~~g~~~~~~~--------~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (553)
                      ++|.+++       ..|+++++..        .+++.+++.|+++++|+++++|+++..|.+......            
T Consensus       224 l~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------  284 (552)
T PRK09274        224 LFALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANG------------  284 (552)
T ss_pred             HHHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcC------------
Confidence            9876553       3477766643        278999999999999999999999999876322110            


Q ss_pred             HHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc--CCceEeeeccccCCCce
Q 008787          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPT  424 (553)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~~~i~~~YG~tE~g~~~  424 (553)
                                                       ...+++|.+++||+++++++.+++++.+  |+++++.||+||+++++
T Consensus       285 ---------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~  331 (552)
T PRK09274        285 ---------------------------------IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPIS  331 (552)
T ss_pred             ---------------------------------CCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeE
Confidence                                             0114899999999999999999999998  46999999999998765


Q ss_pred             eeccCC---------CccccCccCCCCCCeeEEEeecCCC-------CCCCCCCCCCCeEEEecCCccccccCChhhhhh
Q 008787          425 TVCFPD---------EMCMVGTAGPVSVYSELRLEEVPEM-------GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE  488 (553)
Q Consensus       425 ~~~~~~---------~~~~~~~~G~~~~~~~v~i~~~~~~-------~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~  488 (553)
                      ......         ......++|+|+|+++++|+| +.+       ...+++.|+.|||+|+|++++.||+++++.+..
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd-~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~  410 (552)
T PRK09274        332 SIESREILFATRAATDNGAGICVGRPVDGVEVRIIA-ISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRL  410 (552)
T ss_pred             eecchhhhccccccccCCCCcccCccCCCceEEEEe-ccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhh
Confidence            543221         111223789999999999998 422       224567789999999999999999999999987


Q ss_pred             hc---cCC--ccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          489 SI---IDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       489 ~~---~~g--~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      .+   .+|  ||+|||+|++|+||+|+++||.+|+|++ +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus       411 ~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~  478 (552)
T PRK09274        411 AKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGV  478 (552)
T ss_pred             hhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCC
Confidence            76   356  9999999999999999999999999997 899999999999999999999999999865

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=2.1e-58  Score=491.26  Aligned_cols=460  Identities=23%  Similarity=0.283  Sum_probs=354.4

Q ss_pred             cceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCC
Q 008787           23 PVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPG  101 (553)
Q Consensus        23 ~~~r~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~-~gl~~g  101 (553)
                      .++++......+|..  +..++.+.+... +.+|+++|+++.   +.  +  ..+||.||.++++++|++|.+ .|+++|
T Consensus        23 ~~~~~~~~~~~~~~~--~~~~~~~~l~~~-~~~~~~~a~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~~G~~~g   92 (560)
T PLN02574         23 GIYSSKHPPVPLPSD--PNLDAVSFIFSH-HNHNGDTALIDS---ST--G--FSISYSELQPLVKSMAAGLYHVMGVRQG   92 (560)
T ss_pred             eeecCCCCCCCCCCC--CCCCHHHHHhcC-cccCCCCEEEEC---CC--C--CcccHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            456655432223221  223444444333 678999999854   22  2  369999999999999999998 899999


Q ss_pred             CEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecC
Q 008787          102 CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS  181 (553)
Q Consensus       102 d~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (553)
                      |+|+++++|+.++++++|||+++|++++|++|..+.+++.++++.+++++++++......+...      ... ++.+..
T Consensus        93 d~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~  165 (560)
T PLN02574         93 DVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL------GVP-VIGVPE  165 (560)
T ss_pred             CEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc------CCc-EEecCc
Confidence            9999999999999999999999999999999999999999999999999999998765554221      111 222211


Q ss_pred             CchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccC
Q 008787          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED  261 (553)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~  261 (553)
                      ....     ........+|.+++..... ..+.....++++++++|||||||.||+|++||+++...+..+.........
T Consensus       166 ~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~  239 (560)
T PLN02574        166 NYDF-----DSKRIEFPKFYELIKEDFD-FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYE  239 (560)
T ss_pred             cccc-----ccCccCcccHHHHhhcCCc-ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccc
Confidence            1000     0000112345555443311 122334467899999999999999999999999998877654321111011


Q ss_pred             CCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhch
Q 008787          262 KMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP  339 (553)
Q Consensus       262 ~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~  339 (553)
                      .....++++..+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..|++.....      
T Consensus       240 ~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------  313 (560)
T PLN02574        240 YPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV------  313 (560)
T ss_pred             cCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc------
Confidence            1235688899999999999876 4456788999888876 9999999999999999999999999986531100      


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccc
Q 008787          340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLT  418 (553)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~t  418 (553)
                                                    ..        ...+++|.+++||+++++++.+.+.+.+ +..+++.||+|
T Consensus       314 ------------------------------~~--------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~t  355 (560)
T PLN02574        314 ------------------------------CG--------EVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMT  355 (560)
T ss_pred             ------------------------------cc--------CccccceEEEEecccCCHHHHHHHHHHCCCCcEEeccccc
Confidence                                          00        0114899999999999999999998887 78999999999


Q ss_pred             cCCCceeeccC-CCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccc
Q 008787          419 ETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH  496 (553)
Q Consensus       419 E~g~~~~~~~~-~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~  496 (553)
                      |++.+.+.... ......+++|++.|+++++|+| ++++ .++++|+.|||+|+|++++.||+++++.+.+.| .+|||+
T Consensus       356 E~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~g-~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~  433 (560)
T PLN02574        356 ESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVD-WSTG-CLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLR  433 (560)
T ss_pred             ccCceeecCCCccccCCCCceeeeCCCcEEEEEe-CCCC-cCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcc
Confidence            99876543222 2223457899999999999999 4433 456678999999999999999999999998887 689999


Q ss_pred             cCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       497 TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |||+|++|+||++++.||.+|+|++ +|++++|.+||++|.+||+|.|++|+|.++
T Consensus       434 TGDlg~~~~~G~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~  488 (560)
T PLN02574        434 TGDIAYFDEDGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVTAVPD  488 (560)
T ss_pred             cceEEEEECCCeEEEEecchhheEE-CCEEECHHHHHHHHHhCCCcceEEEEcccc
Confidence            9999999999999999999999997 799999999999999999999999999865

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.8e-59  Score=492.83  Aligned_cols=447  Identities=20%  Similarity=0.186  Sum_probs=348.9

Q ss_pred             CCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh
Q 008787           34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ  113 (553)
Q Consensus        34 ~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~  113 (553)
                      +..+.....++.+.|.++|+++|+++|+++.   ++.    +.+||+||.+++.++|+.|.+.|+++||+|+++++|+++
T Consensus         6 ~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e   78 (540)
T PRK05857          6 FQAMPQLPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPE   78 (540)
T ss_pred             ccccccCCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHH
Confidence            4455566789999999999999999999864   331    579999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhC
Q 008787          114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (553)
Q Consensus       114 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (553)
                      +++++|||+++|++++|+++..+.+++.++++.++++++++++...... ........... ++.++.....        
T Consensus        79 ~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~--------  148 (540)
T PRK05857         79 TYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMAS-SAVPEALHSIP-VIAVDIAAVT--------  148 (540)
T ss_pred             HHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcc-ccccccccccc-eeEeeccccc--------
Confidence            9999999999999999999999999999999999999999987653221 11111111111 2222211100        


Q ss_pred             CceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEec
Q 008787          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (553)
Q Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (553)
                        . . +......  ..........++++++++|||||||.||+|.+||+++.+......... ........+++.++.+
T Consensus       149 --~-~-~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  221 (540)
T PRK05857        149 --R-E-SEHSLDA--ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEG-LNWVTWVVGETTYSPL  221 (540)
T ss_pred             --c-c-ccccccc--cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcc-ccccccccCceeeecC
Confidence              0 0 0000000  001112334678999999999999999999999999987654322110 0001345678999999


Q ss_pred             ChHHHHHHHHHHHHHHcCcEEEEecCChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 008787          274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (553)
Q Consensus       274 p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      |++|.+++...+.+++.|+++++.+.++..+++.++++++|+++++|.++..|++......                   
T Consensus       222 p~~h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~-------------------  282 (540)
T PRK05857        222 PATHIGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSAN-------------------  282 (540)
T ss_pred             CccccchHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCC-------------------
Confidence            9999999887777899999987766689999999999999999999999998865321100                   


Q ss_pred             HHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC--
Q 008787          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--  431 (553)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~--  431 (553)
                                        .        ..+++|.+++||++++....+++ +.+++++++.||+||++..........  
T Consensus       283 ------------------~--------~~~~lr~~~~gG~~~~~~~~~~~-~~~g~~i~~~YG~TE~~~~~~~~~~~~~~  335 (540)
T PRK05857        283 ------------------A--------TVPSLRLVGYGGSRAIAADVRFI-EATGVRTAQVYGLSETGCTALCLPTDDGS  335 (540)
T ss_pred             ------------------C--------cCccceEEEEcCccCCchhHHHH-HHhCCeeecccCCCcCCceeeeccccccc
Confidence                              0        11489999999999998877654 466999999999999986544332221  


Q ss_pred             --ccccCccCCCCCCeeEEEeecCCCCC-CC---CCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEcc
Q 008787          432 --MCMVGTAGPVSVYSELRLEEVPEMGY-SP---LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP  505 (553)
Q Consensus       432 --~~~~~~~G~~~~~~~v~i~~~~~~~~-~~---~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~  505 (553)
                        ....+++|+|++|++++|++ +++.. .+   .+.++.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+
T Consensus       336 ~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~  414 (540)
T PRK05857        336 IVKIEAGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERRE  414 (540)
T ss_pred             ccccccCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEEcC
Confidence              12347899999999999998 54432 11   2346889999999999999999999999999999999999999999


Q ss_pred             CCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       506 dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ||++++.||.+|+|++ +|++++|.+||++|..||+|.+|+|+|.++
T Consensus       415 ~g~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~  460 (540)
T PRK05857        415 DGFFYIKGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPD  460 (540)
T ss_pred             CceEEEeccccccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCc
Confidence            9999999999999996 899999999999999999999999999875

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=7e-58  Score=485.47  Aligned_cols=458  Identities=27%  Similarity=0.352  Sum_probs=368.7

Q ss_pred             CCCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCC
Q 008787           20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE   99 (553)
Q Consensus        20 ~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~   99 (553)
                      +++-+||+-+.....    ....++.+.+.++++++|+++|+++.   +  ++  +++||.||.++++++|+.|.+.|++
T Consensus         5 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~a~~~~---~--~~--~~~ty~el~~~~~~la~~L~~~g~~   73 (537)
T PLN02246          5 SEEFIFRSKLPDIYI----PNHLPLHDYCFERLSEFSDRPCLIDG---A--TG--RVYTYADVELLSRRVAAGLHKLGIR   73 (537)
T ss_pred             cceeEecCCCCCCCC----CCCCcHHHHHHHHHHhCCCCeEEEec---C--CC--ceeeHHHHHHHHHHHHHHHHHhCCC
Confidence            456678877655433    33568999999999999999999854   2  12  5799999999999999999999999


Q ss_pred             CCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEe
Q 008787          100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCF  179 (553)
Q Consensus       100 ~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (553)
                      +||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.+++++++++......+.+....  .. ..++.+
T Consensus        74 ~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~-~~~i~~  150 (537)
T PLN02246         74 QGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED--DG-VTVVTI  150 (537)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc--CC-ceEEEe
Confidence            999999999999999999999999999999999999999999999999999999988766554332211  11 234444


Q ss_pred             cCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccc
Q 008787          180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF  259 (553)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~  259 (553)
                      ++...           ...++.++.... ....+.....++++++++|||||||.||+|+++|+++............ .
T Consensus       151 ~~~~~-----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~-~  217 (537)
T PLN02246        151 DDPPE-----------GCLHFSELTQAD-ENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN-P  217 (537)
T ss_pred             CCCCC-----------CceeHHHHhcCC-CCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccc-c
Confidence            43211           123455544332 1222333456789999999999999999999999999887664332110 0


Q ss_pred             cCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhh
Q 008787          260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (553)
Q Consensus       260 ~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~  337 (553)
                      ...+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+....     
T Consensus       218 ~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-----  292 (537)
T PLN02246        218 NLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVV-----  292 (537)
T ss_pred             ccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccc-----
Confidence            125778999999999999999865 5567899999999877 899999999999999999999999887642110     


Q ss_pred             chHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeec
Q 008787          338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYG  416 (553)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG  416 (553)
                                                      ...++        +++|.+++||+++++++.+.+++.+ +..+++.||
T Consensus       293 --------------------------------~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG  332 (537)
T PLN02246        293 --------------------------------EKYDL--------SSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYG  332 (537)
T ss_pred             --------------------------------cccCc--------cceeEEEEecCcCCHHHHHHHHHHcCCCeEecccc
Confidence                                            00011        3899999999999999999999988 678999999


Q ss_pred             cccCCCceeeccC----CCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-c
Q 008787          417 LTETCGPTTVCFP----DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I  491 (553)
Q Consensus       417 ~tE~g~~~~~~~~----~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~  491 (553)
                      +||++.+++....    ......+++|+|++++++++++ ++++ .+++.|+.|||+++|+.++.||+++++.+.+.+ .
T Consensus       333 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~  410 (537)
T PLN02246        333 MTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVD-PETG-ASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDK  410 (537)
T ss_pred             ccccCcccccccccCCCCccccCCccccccCCcEEEEec-CCCC-CcCCCCCceEEEEECCchhccccCCchhhhhcccC
Confidence            9999876554321    1122346899999999999998 4333 456677999999999999999999999998888 6


Q ss_pred             CCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       492 ~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|||+|||+|++++||++++.||.+|+|++ +|++|+|.+||+.|.+||+|.+|+|+|.++
T Consensus       411 ~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~  470 (537)
T PLN02246        411 DGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKD  470 (537)
T ss_pred             CCCeeecceEEEeCCCeEEEEecccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccC
Confidence            899999999999999999999999999997 799999999999999999999999999764

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=4e-58  Score=495.86  Aligned_cols=453  Identities=16%  Similarity=0.171  Sum_probs=352.0

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      .+...++|+++++.+|+++|+++.   +..++..+++||+||.+++.++|+.|++.|+++||+|+++++|+++++++++|
T Consensus        52 ~n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA  128 (629)
T PRK10524         52 TNLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLA  128 (629)
T ss_pred             eeHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            455688898888899999999875   43334457899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhh---------hhhhccccccccCccEEEEecCCchHHHHHHh
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (553)
                      |+++|++++|+++..+.+++.+++++++++++|+++...         ..+.++..........++.++......    .
T Consensus       129 ~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~  204 (629)
T PRK10524        129 CARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM----A  204 (629)
T ss_pred             HHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----C
Confidence            999999999999999999999999999999999876421         111111111112233444444321000    0


Q ss_pred             hCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhh-chhhhccccCCCCCCcEEE
Q 008787          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYL  270 (553)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~~~  270 (553)
                      ........+.++.........+.....++++++++|||||||.||+|+++|.+++..... ....+     ++..+|+++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~  279 (629)
T PRK10524        205 RVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-----GGKAGETFF  279 (629)
T ss_pred             cccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence            001112345555543222222223346789999999999999999999999987644333 22223     677889999


Q ss_pred             EecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHH
Q 008787          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (553)
Q Consensus       271 ~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~  344 (553)
                      +..|+.|..+... ++.++..|+++++.++     ++..+++.++++++|++.++|++++.|.+....            
T Consensus       280 ~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------  347 (629)
T PRK10524        280 CASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPA------------  347 (629)
T ss_pred             EcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcc------------
Confidence            9999999888754 5668999999998764     688999999999999999999999887542100            


Q ss_pred             HHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCce
Q 008787          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT  424 (553)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~  424 (553)
                                             .....++        ++||.+++||+++++++.+++.+.++.++++.||+||++...
T Consensus       348 -----------------------~~~~~~l--------~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~  396 (629)
T PRK10524        348 -----------------------LLRKHDL--------SSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPI  396 (629)
T ss_pred             -----------------------cccccCh--------hheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchh
Confidence                                   0011112        389999999999999999999999999999999999998533


Q ss_pred             eeccCC---CccccCccCCCCCCeeEEEeecC-CCCCCCCCCCCCCeEEEecC---CccccccCChhhhhhhc----cCC
Q 008787          425 TVCFPD---EMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----IDG  493 (553)
Q Consensus       425 ~~~~~~---~~~~~~~~G~~~~~~~v~i~~~~-~~~~~~~~~~~~Gei~v~~~---~~~~gy~~~~~~~~~~~----~~g  493 (553)
                      ......   .....+++|.|++|++++++| + ++  .+++.|+.|||+++||   ..+.+|+++++.+.+.+    .++
T Consensus       397 ~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~g--~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (629)
T PRK10524        397 LAIARGVEDRPTRLGSPGVPMYGYNVKLLN-EVTG--EPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQ  473 (629)
T ss_pred             hcCCCCcccCcCCCCCcccCcCCceEEEEe-CCCC--CCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCc
Confidence            322211   123357899999999999999 5 44  3456779999999998   47789999998776654    368


Q ss_pred             ccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       494 ~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ||+|||+|++|+||+++++||.+|+|++ +|++++|.+||++|.+||+|.+|+|+|.++
T Consensus       474 ~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d  531 (629)
T PRK10524        474 VYSTFDWGIRDADGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKD  531 (629)
T ss_pred             EEEcCCcEEEcCCCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEcccc
Confidence            9999999999999999999999999997 799999999999999999999999999875

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.7e-58  Score=484.44  Aligned_cols=431  Identities=19%  Similarity=0.192  Sum_probs=351.4

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~  121 (553)
                      .++.+.|.++++++|+++|+++.   +      +++||.||.++++++|.+|.+.|+++|++|+++++|++++++++|||
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~  113 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA  113 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence            57999999999999999999853   2      47999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHH
Q 008787          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (553)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (553)
                      +++|++++|+++.++.+++.++++.++++++|++......+..... ..+....++...+..            ....++
T Consensus       114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~~  180 (537)
T PRK13382        114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALA-DCPQATRIVAWTDED------------HDLTVE  180 (537)
T ss_pred             HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHh-hccccceEEEecCCc------------ccccHH
Confidence            9999999999999999999999999999999999776554432221 112222233332211            012344


Q ss_pred             HHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHH
Q 008787          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (553)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~  281 (553)
                      .+.......   ......++.++++|||||||.||+|.++|.++..........+     .+..+++++...|++|.+|+
T Consensus       181 ~~~~~~~~~---~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~  252 (537)
T PRK13382        181 VLIAAHAGQ---RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-----PWRAEEPTVIVAPMFHAWGF  252 (537)
T ss_pred             HHhhccCcC---CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-----CCCCCCeEEEecChHhhhHH
Confidence            443322111   1123467889999999999999999999988887766655544     56778899999999999998


Q ss_pred             HHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccC
Q 008787          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (553)
Q Consensus       282 ~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (553)
                      ...+.++..|+++++... +++.+++.++++++|++.++|+++..|++.....                           
T Consensus       253 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------------------  305 (537)
T PRK13382        253 SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEV---------------------------  305 (537)
T ss_pred             HHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchh---------------------------
Confidence            777788889999888765 8999999999999999999999999886521110                           


Q ss_pred             CcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCC
Q 008787          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (553)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~  440 (553)
                              .+..+        ++++|.+++||+++++++.+.|.+.++.++++.||+||++.+++.+........+++|+
T Consensus       306 --------~~~~~--------~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~  369 (537)
T PRK13382        306 --------RNRYS--------GRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGR  369 (537)
T ss_pred             --------cccCC--------ccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccc
Confidence                    00001        13799999999999999999999999999999999999988766554333334578999


Q ss_pred             CCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEecccCcee
Q 008787          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (553)
Q Consensus       441 ~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~  520 (553)
                      |+++++++++| +++.  +++.|+.|||+++|++++.||+  ++.+. .+.+|||+|||++++++||++++.||.+|+|+
T Consensus       370 p~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~~~~gY~--~~~~~-~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik  443 (537)
T PRK13382        370 PAEGTEIRILD-QDFR--EVPTGEVGTIFVRNDTQFDGYT--SGSTK-DFHDGFMASGDVGYLDENGRLFVVGRDDEMIV  443 (537)
T ss_pred             cCcCcEEEEEC-CCCC--CCCCCCeeEEEEEcCCcccCcc--ccchh-hccCCCEeeCceEEEeCCCcEEEeccccceeE
Confidence            99999999999 5554  4556789999999999999997  44443 35689999999999999999999999999999


Q ss_pred             cCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          521 ISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       521 ~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      . +|++++|.+||++|.+||+|.+|+|+|.++
T Consensus       444 ~-~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~  474 (537)
T PRK13382        444 S-GGENVYPIEVEKTLATHPDVAEAAVIGVDD  474 (537)
T ss_pred             E-CCEEECHHHHHHHHHhCCCEeeEEEEccCc
Confidence            6 899999999999999999999999999875

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-57  Score=484.62  Aligned_cols=446  Identities=25%  Similarity=0.329  Sum_probs=362.0

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~-gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      +..++.+.|.++++++|+++|+++.   +      +++||+||.+++.++|..|.+. |+++|++|+++++|++++++++
T Consensus         8 ~~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~   78 (546)
T PRK08314          8 PETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAY   78 (546)
T ss_pred             CCCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHH
Confidence            3568999999999999999999875   3      4799999999999999999999 9999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCch--H-----HHHHH-
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA--E-----QKEMA-  190 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~-  190 (553)
                      +||+++|++++|+++..+.+++.++++.+++++++++......+.......  ....++.......  .     ...+. 
T Consensus        79 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (546)
T PRK08314         79 YAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVPAWLR  156 (546)
T ss_pred             HHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--CcceEEEecchhhcccccccCcccccc
Confidence            999999999999999999999999999999999999988766554322211  2222332211000  0     00000 


Q ss_pred             ------hhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCC
Q 008787          191 ------VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT  264 (553)
Q Consensus       191 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~  264 (553)
                            .........|++......  ........++++++++|||||||.||+|.+||++++..+......+     .+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~  229 (546)
T PRK08314        157 AEPPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-----NST  229 (546)
T ss_pred             cccccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCC
Confidence                  000113345555554321  1223345778999999999999999999999999998887766555     678


Q ss_pred             CCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHH
Q 008787          265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (553)
Q Consensus       265 ~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~  342 (553)
                      .+|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..++....           
T Consensus       230 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~-----------  298 (546)
T PRK08314        230 PESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG-----------  298 (546)
T ss_pred             CCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCC-----------
Confidence            8999999999999999865 5678999999999876 89999999999999999999999988753100           


Q ss_pred             HHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCC
Q 008787          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG  422 (553)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~  422 (553)
                                                ....++        +++|.+++||+++++++.+++.+.++.++++.||+||++.
T Consensus       299 --------------------------~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~  344 (546)
T PRK08314        299 --------------------------LAERDL--------SSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMA  344 (546)
T ss_pred             --------------------------ccccCc--------hhhheeeeccccCCHHHHHHHHHHcCCcEEeccccccccc
Confidence                                      011112        3799999999999999999999988999999999999987


Q ss_pred             ceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhcc--C--CccccC
Q 008787          423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTG  498 (553)
Q Consensus       423 ~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~--~--g~~~TG  498 (553)
                      .......... ...++|.|+++++++++| ++.+ .+++.|+.|||+|+|++++.||+++++.+.+.|.  +  +||+||
T Consensus       345 ~~~~~~~~~~-~~~~~G~~~~g~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TG  421 (546)
T PRK08314        345 QTHSNPPDRP-KLQCLGIPTFGVDARVID-PETL-EELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTG  421 (546)
T ss_pred             ceecCCCcCC-CCCccCcccCCeEEEEEe-CCCC-cCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecC
Confidence            7665443322 347899999999999999 4333 4455678999999999999999999999988772  3  499999


Q ss_pred             ceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       499 D~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |+|+++++|++++.||.+|+|++ +|++++|.+||++|.+||+|.+++|+|.++
T Consensus       422 Dl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~  474 (546)
T PRK08314        422 DLGRMDEEGYFFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPD  474 (546)
T ss_pred             CEEEEcCCCcEEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCC
Confidence            99999999999999999999997 799999999999999999999999999765

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.1e-57  Score=476.19  Aligned_cols=416  Identities=25%  Similarity=0.335  Sum_probs=352.7

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      |+++.+.|.+++.++||++|+++.    +     +.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++||
T Consensus         1 ~~~~~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (483)
T PRK03640          1 METMPNWLKQRAFLTPDRTAIEFE----E-----KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA   71 (483)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC----C-----eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            578999999999999999999864    2     5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++..+.+++..+++.++++.++++...........                              ...+
T Consensus        72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------------------------------~~~~  121 (483)
T PRK03640         72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI------------------------------SVKF  121 (483)
T ss_pred             HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc------------------------------cccH
Confidence            9999999999999999999999999999999999876543321100                              0113


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                      +++...............++++++++|||||||.||+|.+||.++...+......+     ++..+|++++.+|++|.++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  196 (483)
T PRK03640        122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-----GLTEDDCWLAAVPIFHISG  196 (483)
T ss_pred             HHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-----CCCcCcEEEEecCHHHHHH
Confidence            33322211111222334678999999999999999999999999887766555444     6788999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcc
Q 008787          281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (553)
Q Consensus       281 ~~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (553)
                      +...+.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+.+...                          
T Consensus       197 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--------------------------  250 (483)
T PRK03640        197 LSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG--------------------------  250 (483)
T ss_pred             HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------
Confidence            8877788899999999887 9999999999999999999999999886422110                          


Q ss_pred             CCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeecc-CCCccccCcc
Q 008787          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-PDEMCMVGTA  438 (553)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~-~~~~~~~~~~  438 (553)
                                          ....++|.+++||+++++.+.+.+++. ++++++.||+||++...+... .......+++
T Consensus       251 --------------------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~v  309 (483)
T PRK03640        251 --------------------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSA  309 (483)
T ss_pred             --------------------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCc
Confidence                                001389999999999999999988875 999999999999876544333 2234445899


Q ss_pred             CCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEecccCc
Q 008787          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL  518 (553)
Q Consensus       439 G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~  518 (553)
                      |+|++++++++.+ ++   .+++.++.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++++||++++.||.+|+
T Consensus       310 G~p~~~~~~~i~~-~~---~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~g~l~~~GR~~~~  385 (483)
T PRK03640        310 GKPLFPCELKIEK-DG---VVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDL  385 (483)
T ss_pred             ccccCCcEEEEec-CC---CcCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCCCCEEEeecccCe
Confidence            9999999999988 43   3566778999999999999999999999999899999999999999999999999999999


Q ss_pred             eecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          519 IKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       519 i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +++ +|.+++|.+||+.+.++|+|.+++|++.++
T Consensus       386 i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~  418 (483)
T PRK03640        386 IIS-GGENIYPAEIEEVLLSHPGVAEAGVVGVPD  418 (483)
T ss_pred             EEe-CCEEECHHHHHHHHHhCCCeeEEEEEeCCC
Confidence            996 899999999999999999999999998765

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-57  Score=478.87  Aligned_cols=424  Identities=23%  Similarity=0.276  Sum_probs=351.5

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~-~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..+.+.|.++|+.+|+++|+++.    +     +.+||.||.++++++|++|++ .|+++|++|+++++|+++++++++|
T Consensus         2 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la   72 (496)
T PRK06839          2 QGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA   72 (496)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            46889999999999999999853    3     589999999999999999985 6999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++..+.+++..+++.++++++++++.....+......  .....++.+.                  ++
T Consensus        73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~------------------~~  132 (496)
T PRK06839         73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKV--SYVQRVISIT------------------SL  132 (496)
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhc--cCcceEEEec------------------ch
Confidence            999999999999999999999999999999999988765544222111  1112222222                  12


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                      .++....   ........++++++++|||||||.||+|.++|.++..........+     ++..++++++.+|++|.+|
T Consensus       133 ~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  204 (496)
T PRK06839        133 KEIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-----DLTMHDRSIVLLPLFHIGG  204 (496)
T ss_pred             HhhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-----CCCCCCeEEEeeCCcchhh
Confidence            2222111   1122234568899999999999999999999999876655444433     6778899999999999999


Q ss_pred             HHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 008787          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (553)
Q Consensus       281 ~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (553)
                      +.. .+.++..|+++++.+. +++.+++.++++++|++.++|.+++.+++.....                         
T Consensus       205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------  259 (496)
T PRK06839        205 IGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE-------------------------  259 (496)
T ss_pred             HHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc-------------------------
Confidence            875 4567889999888766 9999999999999999999999999986531100                         


Q ss_pred             cCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCC-CccccCc
Q 008787          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-EMCMVGT  437 (553)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~-~~~~~~~  437 (553)
                                  .        ...+++|.+++||+++++++.+.+++. |+++.+.||+||++...+..... .....++
T Consensus       260 ------------~--------~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  318 (496)
T PRK06839        260 ------------T--------TNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGS  318 (496)
T ss_pred             ------------c--------CCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCC
Confidence                        0        011489999999999999999999887 99999999999998765544322 2334578


Q ss_pred             cCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEecccC
Q 008787          438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN  517 (553)
Q Consensus       438 ~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d  517 (553)
                      +|+|+++.++++++ +++..  ++.|+.|||+|+|+.++.||+++++.+...+.+|||+|||+|++|+||++++.||.+|
T Consensus       319 ~G~p~~~~~~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d  395 (496)
T PRK06839        319 IGKPVLFCDYELID-ENKNK--VEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGFVYIVGRKKE  395 (496)
T ss_pred             CcccCCCceEEEEC-CCcCC--CCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcCCCcEEEeccccc
Confidence            99999999999999 65554  5677999999999999999999999999888999999999999999999999999999


Q ss_pred             ceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          518 LIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       518 ~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|+. +|++++|.+||++|.++|+|.+|+|+|+++
T Consensus       396 ~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~  429 (496)
T PRK06839        396 MIIS-GGENIYPLEVEQVINKLSDVYEVAVVGRQH  429 (496)
T ss_pred             eEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccc
Confidence            9996 899999999999999999999999999865

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=2.4e-57  Score=479.58  Aligned_cols=445  Identities=23%  Similarity=0.293  Sum_probs=359.3

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|+++++++|+++|+++.   + ..+.++.+||.||.++++++|..|.++|+++||+|+++++|+.+++++++|
T Consensus         6 ~~~l~~~~~~~a~~~p~~~a~~~~---~-~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la   81 (517)
T PRK08008          6 GQHLRQMWDDLADVYGHKTALIFE---S-SGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFG   81 (517)
T ss_pred             cccHHHHHHHHHHHCCCceEEEcc---c-CCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            468999999999999999999875   4 345567899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++++++..+.+++.++++.+++++++++.+....+.+...+.....+.++..+....        ......++
T Consensus        82 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  153 (517)
T PRK08008         82 LAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALP--------ADDGVSSF  153 (517)
T ss_pred             HHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCc--------ccccccCH
Confidence            9999999999999999999999999999999999987765554433222233444554443211        01123345


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                      .++............+..++++++++|||||||.||+|.+||.++...........     .+..++++++.+|++|..+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~  228 (517)
T PRK08008        154 TQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-----ALRDDDVYLTVMPAFHIDC  228 (517)
T ss_pred             HHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-----CCCCCCeEEEecCcHHHHH
Confidence            44443322111122344678999999999999999999999999986543322111     4678899999999999877


Q ss_pred             HHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 008787          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (553)
Q Consensus       281 ~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (553)
                      ... .+.++..|+++++.++ ++..+++.++++++|++.++|.+++.+........                        
T Consensus       229 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------  284 (517)
T PRK08008        229 QCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSAN------------------------  284 (517)
T ss_pred             HHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccc------------------------
Confidence            664 5667889999999877 89999999999999999999999988753210000                        


Q ss_pred             cCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCcc
Q 008787          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  438 (553)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~  438 (553)
                                .   .        ..+++.+.++ .+++++....+.+.++.++++.||+||++..+..........+.++
T Consensus       285 ----------~---~--------~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  342 (517)
T PRK08008        285 ----------D---R--------QHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSI  342 (517)
T ss_pred             ----------c---c--------cccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCcc
Confidence                      0   0        0257777765 4788888888888889999999999999876665544444556789


Q ss_pred             CCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEec---CCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEEEec
Q 008787          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG---KTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDR  514 (553)
Q Consensus       439 G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~---~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~GR  514 (553)
                      |.|+++++++++| +++  .+++.|+.|||+++|   +.++.||+++++.+.+.+ .+|||+|||+|++|+||++++.||
T Consensus       343 G~~~~g~~~~i~d-~~~--~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR  419 (517)
T PRK08008        343 GRPGFCYEAEIRD-DHN--RPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDR  419 (517)
T ss_pred             ccCCCCcEEEEEC-CCC--CCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeec
Confidence            9999999999999 555  445567899999998   689999999999999888 689999999999999999999999


Q ss_pred             ccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          515 KKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       515 ~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      .+|+|++ +|++++|.+||++|.+||.|.+|+|+|+++
T Consensus       420 ~~d~i~~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~  456 (517)
T PRK08008        420 RCNMIKR-GGENVSCVELENIIATHPKIQDIVVVGIKD  456 (517)
T ss_pred             ccceEEe-CCEEECHHHHHHHHHhCCceeeEEEEccCC
Confidence            9999996 799999999999999999999999999875

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.1e-57  Score=478.78  Aligned_cols=443  Identities=25%  Similarity=0.374  Sum_probs=369.8

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      .++.++.+.|.+.++.+|+++|+++.    +     +++||+||.+.+.++|..|.+.|+++||+|+++++|++++++++
T Consensus         2 ~~~~~i~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~   72 (513)
T PRK07656          2 NEWMTLPELLARAARRFGDKEAYVFG----D-----QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAA   72 (513)
T ss_pred             CccccHHHHHHHHHHHCCCCeEEEeC----C-----CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            45688999999999999999999864    3     48999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceee
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (553)
                      +||+++|++++|+++..+.+++..+++.+++++++++........... ........++........      .......
T Consensus        73 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~  145 (513)
T PRK07656         73 LGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSAT-TRLPALEHVVICETEEDD------PHTEKMK  145 (513)
T ss_pred             HHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHH-hccCCccEEEEEcCcccc------cCccccc
Confidence            999999999999999999999999999999999999887655443322 222334444443332110      0011234


Q ss_pred             eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHH
Q 008787          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (553)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  278 (553)
                      +|+++...... .........+++++++|||||||.||+|.++|.++...+......+     ++..++++++..|++|.
T Consensus       146 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  219 (513)
T PRK07656        146 TFTDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-----GLTEGDRYLAANPFFHV  219 (513)
T ss_pred             cHHHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-----CCCCCCeEEEccchHHH
Confidence            56666654322 2233455788999999999999999999999999998887766665     67889999999999999


Q ss_pred             HHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787          279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (553)
Q Consensus       279 ~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (553)
                      +++.. .+.++..|+++++.+. +++.+++.++++++|++.++|.++..|++......                      
T Consensus       220 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------  277 (513)
T PRK07656        220 FGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSA----------------------  277 (513)
T ss_pred             HHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCC----------------------
Confidence            99875 5668999999888765 89999999999999999999999999865321110                      


Q ss_pred             hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceEeeeccccCCCceeeccCCCccc-
Q 008787          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCM-  434 (553)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~i~~~YG~tE~g~~~~~~~~~~~~~-  434 (553)
                                     .++        +++|.+++||+++++++.+.+++.++. ++++.||+||+|++++.+....... 
T Consensus       278 ---------------~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~  334 (513)
T PRK07656        278 ---------------EDL--------SSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKT  334 (513)
T ss_pred             ---------------CCc--------cceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccc
Confidence                           011        389999999999999999999999988 8999999999988887766544322 


Q ss_pred             -cCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhcc-CCccccCceEEEccCCcEEEE
Q 008787          435 -VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKII  512 (553)
Q Consensus       435 -~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~g~~~~dG~l~~~  512 (553)
                       ..++|.|++++++++++ +++  .+++.|+.|||+++|+.++.||++++..+...+. +|||+|||+|++++||.+++.
T Consensus       335 ~~~~vG~~~~~~~~~i~d-~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~  411 (513)
T PRK07656        335 VAGTIGTAIAGVENKIVN-ELG--EEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIV  411 (513)
T ss_pred             cCCCccccCCCcEEEEEC-CCC--CCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEE
Confidence             57899999999999999 554  4455678999999999999999999999888874 899999999999999999999


Q ss_pred             ecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       513 GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ||.+|+|++ +|.+++|.+||++|.++|+|.+++|+|.++
T Consensus       412 GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~  450 (513)
T PRK07656        412 DRKKDMFIV-GGFNVYPAEVEEVLYEHPAVAEAAVIGVPD  450 (513)
T ss_pred             ecccceEEe-CCEEeCHHHHHHHHHhCCCeeEEEEEecCC
Confidence            999999997 899999999999999999999999998764

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.7e-57  Score=482.10  Aligned_cols=449  Identities=22%  Similarity=0.298  Sum_probs=353.9

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~-~gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      .+.|+.+.|++.++++|+++|+++.    +     +.+||.||.+++.++|+.|.+ .|+++||+|+++++|++++++++
T Consensus        22 ~~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~   92 (562)
T PRK05677         22 EYPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAV   92 (562)
T ss_pred             ccCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence            3468999999999999999999853    3     479999999999999999997 59999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCc--hHHHHH-H-----
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT--AEQKEM-A-----  190 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~-----  190 (553)
                      |||+++|++++|+++..+.+++.++++.++++++|++......+.+... . ...+.++......  ...... .     
T Consensus        93 la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (562)
T PRK05677         93 FGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLP-K-TGVKHVIVTEVADMLPPLKRLLINAVVK  170 (562)
T ss_pred             HHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhh-c-cCcceeEEecccccccchhhhhcccchh
Confidence            9999999999999999999999999999999999998765543322211 1 1222232221100  000000 0     


Q ss_pred             -------hhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCC
Q 008787          191 -------VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (553)
Q Consensus       191 -------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~  263 (553)
                             .........+.+.+..............++++++++|||||||.||+|+++|.++..........+.   ..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~---~~~  247 (562)
T PRK05677        171 HVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMG---SNL  247 (562)
T ss_pred             hccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhc---cCC
Confidence                   0000112344554443322222233456789999999999999999999999999877655443331   122


Q ss_pred             C-CCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhch
Q 008787          264 T-VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP  339 (553)
Q Consensus       264 ~-~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~  339 (553)
                      . ..+.+++.+|++|.+++.. ++..+..|++.++.+.  ++..+++.++++++|.++++|+++..+++...        
T Consensus       248 ~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------  319 (562)
T PRK05677        248 NEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEA--------  319 (562)
T ss_pred             CCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcc--------
Confidence            2 3468899999999999875 5556777887766653  88999999999999999999999988764210        


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeecccc
Q 008787          340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE  419 (553)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE  419 (553)
                                                   .....+        +++|.+++||+++++++.+.+++.+++++++.||+||
T Consensus       320 -----------------------------~~~~~~--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE  362 (562)
T PRK05677        320 -----------------------------FRKLDF--------SALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTE  362 (562)
T ss_pred             -----------------------------cccCCh--------hhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccc
Confidence                                         000011        3799999999999999999999989999999999999


Q ss_pred             CCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccC
Q 008787          420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (553)
Q Consensus       420 ~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TG  498 (553)
                      ++.+........ ...+++|+|+++++++++| +++  .+++.|+.|||+++|+.++.||+++++.+.+.| .+|||+||
T Consensus       363 ~~~~~~~~~~~~-~~~~~vG~~~~~~~v~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG  438 (562)
T PRK05677        363 TSPVVSVNPSQA-IQVGTIGIPVPSTLCKVID-DDG--NELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTG  438 (562)
T ss_pred             cCcceeecCccC-CCCCccCccCCCCEEEEEC-CCC--CCCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCccccc
Confidence            987766554332 2347899999999999999 554  345677999999999999999999999999888 68999999


Q ss_pred             ceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       499 D~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |+|++|+||++++.||.+|+|++ +|++++|.+||++|.+||+|.+++|+|+++
T Consensus       439 Dlg~~~~~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~  491 (562)
T PRK05677        439 DIALIQEDGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPD  491 (562)
T ss_pred             ceEEECCCCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccC
Confidence            99999999999999999999997 799999999999999999999999999764

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.7e-58  Score=492.76  Aligned_cols=455  Identities=18%  Similarity=0.171  Sum_probs=348.4

Q ss_pred             eeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEE
Q 008787           25 YRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRV  104 (553)
Q Consensus        25 ~r~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V  104 (553)
                      |+|+...+..-.. +...++.++|+++++.+|+++|+++....+..++.++.+||+||.++++++|++|.+. +++||+|
T Consensus         5 ~~~~~~~~~~~~~-~~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V   82 (631)
T PRK07769          5 FHNPFDVNGKIRF-PPNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRV   82 (631)
T ss_pred             cCCcccccccccc-cccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEE
Confidence            4555555555432 3446899999999999999999987510011233457899999999999999999987 8999999


Q ss_pred             EEEeCCchhHHHHHHHHHhcCCEEeeC-CCCCC--hhHHHHHHhhcCceEEEEcchhhhhhhccccccc-cCccEEEEec
Q 008787          105 GIYGANCPQWVEAMEACNALSLICVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFT  180 (553)
Q Consensus       105 ~l~~~n~~~~~~~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  180 (553)
                      +++++|++++++++|||+++|++++|+ ++..+  .+++.++++.++++++|++......+.+...... .....++.++
T Consensus        83 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (631)
T PRK07769         83 AILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVD  162 (631)
T ss_pred             EEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcc
Confidence            999999999999999999999999999 44443  5789999999999999998876544322111100 0112233222


Q ss_pred             CCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhcccc
Q 008787          181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFE  260 (553)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~  260 (553)
                      ....                  ..    ..........++++++|+|||||||.||+|++||+++...+......+    
T Consensus       163 ~~~~------------------~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~----  216 (631)
T PRK07769        163 AVPD------------------EV----GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL----  216 (631)
T ss_pred             cccc------------------cc----ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc----
Confidence            1100                  00    000111234678999999999999999999999999998877665554    


Q ss_pred             CCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC-----ChHHHHHHhhhhcC---cEEeechHHHHHHHHHHHH
Q 008787          261 DKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKP---TLLAGVPRVFEKIHEGIKK  332 (553)
Q Consensus       261 ~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~---t~l~~~p~~~~~l~~~~~~  332 (553)
                       ++..++++++++|++|.+|+...+.+++.|+++++++.     ++..+++.++++++   +++.++|.++..+......
T Consensus       217 -~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~  295 (631)
T PRK07769        217 -EGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGL  295 (631)
T ss_pred             -CCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhcc
Confidence             67788999999999999999877777788999888742     78899999999886   7899999988766431000


Q ss_pred             HHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc---CC
Q 008787          333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA  409 (553)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~---~~  409 (553)
                      .                                .......++        +++|.+++||+++++++.++|.+.|   |.
T Consensus       296 ~--------------------------------~~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~  335 (631)
T PRK07769        296 P--------------------------------KDGEPPLDL--------SNVKGLLNGSEPVSPASMRKFNEAFAPYGL  335 (631)
T ss_pred             c--------------------------------hhcccCcch--------hheeeEEeccCCCCHHHHHHHHHHHhhcCC
Confidence            0                                000001112        3899999999999999999999887   33


Q ss_pred             ---ceEeeeccccCCCceeeccCCCc--------------------------cccCccCCCCCCeeEEEeecCCCCCCCC
Q 008787          410 ---FLVQGYGLTETCGPTTVCFPDEM--------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPL  460 (553)
Q Consensus       410 ---~i~~~YG~tE~g~~~~~~~~~~~--------------------------~~~~~~G~~~~~~~v~i~~~~~~~~~~~  460 (553)
                         .+++.||+||++...+.......                          ....++|+|.++.+++++| ++++ .++
T Consensus       336 ~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd-~~~g-~~~  413 (631)
T PRK07769        336 PPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVD-PETA-SEL  413 (631)
T ss_pred             ChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEc-CCCC-cCC
Confidence               49999999998765554322110                          0124789999999999998 4333 455


Q ss_pred             CCCCCCeEEEecCCccccccCChhhhhhhcc------------------CCccccCceEEEccCCcEEEEecccCceecC
Q 008787          461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESII------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKIS  522 (553)
Q Consensus       461 ~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~------------------~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~  522 (553)
                      +.|+.|||+|+||+++.||+++++.+++.|.                  +|||+|||+|+++ ||+|+|+||.+|+|++ 
T Consensus       414 ~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~-  491 (631)
T PRK07769        414 PDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVII-  491 (631)
T ss_pred             CCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEE-
Confidence            6789999999999999999999999988873                  3899999999995 9999999999999997 


Q ss_pred             CceeecchhHHHHHhc-CcCcce--EEEEecCC
Q 008787          523 QGEYVALEYLENVYCV-APIIED--VSISYSSV  552 (553)
Q Consensus       523 ~G~~~~~~~iE~~l~~-~p~V~~--~~V~g~~~  552 (553)
                      +|++|+|.|||++|.+ ||.|.+  |+|+|+++
T Consensus       492 ~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d  524 (631)
T PRK07769        492 DGRNHYPQDLEYTAQEATKALRTGYVAAFSVPA  524 (631)
T ss_pred             CCeeeCHHHHHHHHHhccccccCCcEEEEEecc
Confidence            8999999999999986 899998  99999876

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=3.6e-57  Score=479.55  Aligned_cols=440  Identities=22%  Similarity=0.260  Sum_probs=358.1

Q ss_pred             CCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 008787           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (553)
Q Consensus        36 ~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~  115 (553)
                      ..+...+++.++|.++++++|+++|+++.   +      +.+||.||.+++.++|..|.+.|+++|++|+++++|+++++
T Consensus        15 ~~~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~   85 (542)
T PRK06155         15 PLPPSERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFL   85 (542)
T ss_pred             cCCccccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHH
Confidence            34445688999999999999999999864   2      47999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCc
Q 008787          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (553)
Q Consensus       116 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (553)
                      +++|||+++|++++|+++.++.+++..+++.+++++++++.+....+.+.... ......++.++.....    ..  . 
T Consensus        86 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~--~-  157 (542)
T PRK06155         86 DVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPG-DLPLPAVWLLDAPASV----SV--P-  157 (542)
T ss_pred             HHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhccc-ccCcceEEEecCcccc----cc--c-
Confidence            99999999999999999999999999999999999999998776655332221 1233445555432110    00  0 


Q ss_pred             eeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecCh
Q 008787          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (553)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  275 (553)
                      ..+....+...  ..........++++++++|||||||.||+|.++|.++..........+     .+..++++++..|+
T Consensus       158 ~~~~~~~~~~~--~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl  230 (542)
T PRK06155        158 AGWSTAPLPPL--DAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-----EIGADDVLYTTLPL  230 (542)
T ss_pred             cccchhhhccc--CCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-----CCCCCCEEEEecCH
Confidence            00001111111  111122334678999999999999999999999999987776655554     67888999999999


Q ss_pred             HHHHHHHHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 008787          276 AHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (553)
Q Consensus       276 ~~~~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (553)
                      +|.+++...+.++..|+++++.+. ++..+++.|+++++|.+.++|+++..|.+......                    
T Consensus       231 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------  290 (542)
T PRK06155        231 FHTNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARES--------------------  290 (542)
T ss_pred             HHHHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccc--------------------
Confidence            999999877888999999988776 89999999999999999999999888764211100                    


Q ss_pred             HHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccc
Q 008787          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (553)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~  434 (553)
                                               ...+++|.++.||  +++++.+.+++.+++++++.||+||++.++.....  ...
T Consensus       291 -------------------------~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~--~~~  341 (542)
T PRK06155        291 -------------------------DRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTHG--SQR  341 (542)
T ss_pred             -------------------------cccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCCC--CCC
Confidence                                     0013788887666  57888999999899999999999999887665432  234


Q ss_pred             cCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecC---CccccccCChhhhhhhccCCccccCceEEEccCCcEEE
Q 008787          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI  511 (553)
Q Consensus       435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~---~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~  511 (553)
                      .+++|.+.++++++|++ +++.  +++.|+.|||+++|+   .++.||+++++.+.+.|.++||+|||+|++++||++++
T Consensus       342 ~~~vG~~~~~~~~~i~d-~~~~--~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~l~i  418 (542)
T PRK06155        342 PGSMGRLAPGFEARVVD-EHDQ--ELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRF  418 (542)
T ss_pred             CCCcCccCCCceEEEEC-CCCC--CCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCceEEE
Confidence            47899999999999998 5543  455678999999998   68999999999999989999999999999999999999


Q ss_pred             EecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       512 ~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      .||.+|+|++ +|++++|.+||++|.+||+|.+|+|+|+++
T Consensus       419 ~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~  458 (542)
T PRK06155        419 VDRIKDAIRR-RGENISSFEVEQVLLSHPAVAAAAVFPVPS  458 (542)
T ss_pred             EecCCCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeecc
Confidence            9999999996 899999999999999999999999998764

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=4.1e-57  Score=479.73  Aligned_cols=440  Identities=23%  Similarity=0.267  Sum_probs=355.7

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~  121 (553)
                      .++.+.|.++++.+|+++|+++.   +...+..+.+||+||.+++.++|.+|++.|+++|++|+++++|+.+++++++||
T Consensus        22 ~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~   98 (538)
T TIGR03208        22 RTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLAC   98 (538)
T ss_pred             CcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            57999999999999999999864   223334468999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhh----hhhccccccccCccEEEEecCCchHHHHHHhhCCcee
Q 008787          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (553)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (553)
                      +++|++++|+++..+.+++.++++.++++++++++....    ..........+....++..+...             .
T Consensus        99 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~  165 (538)
T TIGR03208        99 ARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG-------------D  165 (538)
T ss_pred             HhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC-------------C
Confidence            999999999999999999999999999999999875421    00111111223334455543321             1


Q ss_pred             eeHHHHHhcccccc-------cccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEE
Q 008787          198 YSWDEFLHLGKVNE-------MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  270 (553)
Q Consensus       198 ~~~~~l~~~~~~~~-------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~  270 (553)
                      ..++.++.......       .......++++++++|||||||.||+|+++|+++...+......+     ++..+++++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l  240 (538)
T TIGR03208       166 DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL-----ELGGGDVIL  240 (538)
T ss_pred             cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhc-----CCCCCCeEE
Confidence            12333322110000       111234678999999999999999999999999998877766555     677889999


Q ss_pred             EecChHHHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 008787          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (553)
Q Consensus       271 ~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (553)
                      +.+|++|..|+.. .+.++..|+++++.+. ++..+++.++++++|++.++|.++..+.........             
T Consensus       241 ~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~-------------  307 (538)
T TIGR03208       241 MASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGA-------------  307 (538)
T ss_pred             EeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCC-------------
Confidence            9999999998765 5668999999888766 899999999999999999999999887653221100             


Q ss_pred             HHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeecc
Q 008787          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF  428 (553)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~  428 (553)
                                                      ..+++|.+++||+++++++.+++.+.+++++++.||+||++.+.....
T Consensus       308 --------------------------------~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  355 (538)
T TIGR03208       308 --------------------------------PVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEP  355 (538)
T ss_pred             --------------------------------CCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCc
Confidence                                            114899999999999999999999888999999999999987766544


Q ss_pred             CCC-ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCC
Q 008787          429 PDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG  507 (553)
Q Consensus       429 ~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG  507 (553)
                      ... .....++|+|+|++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+.. ..+|||+|||+|++|+||
T Consensus       356 ~~~~~~~~~~~G~~~~g~~v~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~-~~~~~~~TGD~~~~~~~g  431 (538)
T TIGR03208       356 DDALEKASTTDGRPLPGVEVKVID-ANGA--KLSQGETGRLLVRGCSNFGGYLKRPHLNST-DAEGWFDTGDLAFQDAEG  431 (538)
T ss_pred             ccchhhccCcccccCCCCEEEEEC-CCCC--CCcCCCCcEEEEecCcccccccCCcccccc-cCCCceeccceEEECCCC
Confidence            322 22235789999999999999 5543  455778999999999999999999887653 368999999999999999


Q ss_pred             cEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +++++||.+|+|+. +|++++|.+||++|.+||+|.+++|+|.++
T Consensus       432 ~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~  475 (538)
T TIGR03208       432 YIRINGRSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPD  475 (538)
T ss_pred             cEEEEeccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccC
Confidence            99999999999996 899999999999999999999999999865

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.2e-57  Score=473.99  Aligned_cols=417  Identities=18%  Similarity=0.205  Sum_probs=347.7

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~  121 (553)
                      +++.+.|.++++++|+++|+.+.    +     +++||.||.+++.++|.+|.+.|. +|++|+++++|++++++++|||
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~   70 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKEN----D-----RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA   70 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecC----C-----cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence            46789999999999999999864    2     489999999999999999999985 8999999999999999999999


Q ss_pred             HhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHH
Q 008787          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (553)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (553)
                      +++|++++|+++.++++++.++++.+++++++++......+...      . ..++..+.                  +.
T Consensus        71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~-~~~~~~~~------------------~~  125 (487)
T PRK07638         71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------E-GRVIEIDE------------------WK  125 (487)
T ss_pred             HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------c-ceEEEehh------------------hh
Confidence            99999999999999999999999999999999988654433110      0 11222211                  11


Q ss_pred             HHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHH
Q 008787          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (553)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~  281 (553)
                      +....... .........+++++++|||||||.||+|+++|++++..+......+     .+..+|+++...|++|..++
T Consensus       126 ~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~l~~~~~l  199 (487)
T PRK07638        126 RMIEKYLP-TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-----HMKREDSVLIAGTLVHSLFL  199 (487)
T ss_pred             hhhhhccc-cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CcCCCCEEEEeecchHHHHH
Confidence            11111101 1111122356789999999999999999999999988877665554     67889999999999998887


Q ss_pred             HHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccC
Q 008787          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (553)
Q Consensus       282 ~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (553)
                      ...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..|.+...                             
T Consensus       200 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------------------  250 (487)
T PRK07638        200 YGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR-----------------------------  250 (487)
T ss_pred             HHHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC-----------------------------
Confidence            777778999999998876 89999999999999999999999998864200                             


Q ss_pred             CcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCCccccCccC
Q 008787          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG  439 (553)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G  439 (553)
                                          ...+.+.++++|+++++++.+++.+.+ +..+++.||+||++.++............++|
T Consensus       251 --------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G  310 (487)
T PRK07638        251 --------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVG  310 (487)
T ss_pred             --------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCC
Confidence                                002456677889999999999999988 78899999999999876665543344557899


Q ss_pred             CCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEecccCce
Q 008787          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI  519 (553)
Q Consensus       440 ~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i  519 (553)
                      +|+++++++|+| +++  .++++|+.|||+|+|+.++.||+++++.+.+.+.+|||+|||+|++|+||++++.||.+|+|
T Consensus       311 ~~~~~~~~~i~d-~~g--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i  387 (487)
T PRK07638        311 RPFHNVQVRICN-EAG--EEVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMI  387 (487)
T ss_pred             cccCCcEEEEEC-CCC--CCCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCCeEEEEecCCCeE
Confidence            999999999999 554  35567799999999999999999999888877789999999999999999999999999999


Q ss_pred             ecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          520 KISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       520 ~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ++ +|++++|.+||++|.+||+|.+|+|+|.++
T Consensus       388 ~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~  419 (487)
T PRK07638        388 LF-GGINIFPEEIESVLHEHPAVDEIVVIGVPD  419 (487)
T ss_pred             Ee-CCEEECHHHHHHHHHhCCCeeeEEEEecCc
Confidence            97 899999999999999999999999999875

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=4e-57  Score=482.46  Aligned_cols=444  Identities=21%  Similarity=0.292  Sum_probs=339.4

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~  121 (553)
                      .++.+.|.++++++|+++|+.+.    +     .++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||
T Consensus        14 ~~~~~~l~~~~~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~   84 (579)
T PLN03102         14 LTPITFLKRASECYPNRTSIIYG----K-----TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAV   84 (579)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEEC----C-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence            57899999999999999999864    2     47999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccc----cCccEEEEecCCchHHHHHHhhCCcee
Q 008787          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA----QRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (553)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (553)
                      +++|++++|+++..+.+++.++++.++++++|++......+.+......    .....++.++......     ......
T Consensus        85 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  159 (579)
T PLN03102         85 PMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPK-----RPSSEE  159 (579)
T ss_pred             HhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEeccccccc-----CCcccc
Confidence            9999999999999999999999999999999998776554433221100    0011233333211100     001123


Q ss_pred             eeHHHHHhcccccccc----cCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEec
Q 008787          198 YSWDEFLHLGKVNEME----ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (553)
Q Consensus       198 ~~~~~l~~~~~~~~~~----~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (553)
                      .++.++.+........    .....++++++|+|||||||.||+|+++|.++...........     .+...++++..+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~  234 (579)
T PLN03102        160 LDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-----EMGTCPVYLWTL  234 (579)
T ss_pred             cCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-----CCCCCCeEEecC
Confidence            4556655433221111    1123568999999999999999999999999755443322211     455667889999


Q ss_pred             ChHHHHHHHHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 008787          274 PLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (553)
Q Consensus       274 p~~~~~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (553)
                      |++|.+|+...+.++..|+++++.+. ++..+++.|+++++|++.++|+++..|.+.......                 
T Consensus       235 pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----------------  297 (579)
T PLN03102        235 PMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLS-----------------  297 (579)
T ss_pred             ChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccC-----------------
Confidence            99999998776777888888877765 888999999999999999999999998653110000                 


Q ss_pred             HHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC-
Q 008787          353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-  431 (553)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-  431 (553)
                                          .        .++++.+++||+++++.+.+++++ +|.++++.||+||+++......... 
T Consensus       298 --------------------~--------~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~~  348 (579)
T PLN03102        298 --------------------P--------RSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQDE  348 (579)
T ss_pred             --------------------C--------cccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccccccccccc
Confidence                                0        025788999999999999999876 5999999999999986543321100 


Q ss_pred             ------------ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCc
Q 008787          432 ------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGD  499 (553)
Q Consensus       432 ------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD  499 (553)
                                  ....+..+.+.++  +.+.+.+.+...+.+.++.|||+|+|+.++.||+++++.+.+.|.+|||+|||
T Consensus       349 ~~~~~~~~~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TGD  426 (579)
T PLN03102        349 WNRLPENQQMELKARQGVSILGLAD--VDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTGD  426 (579)
T ss_pred             cccCCcccccccccCCCcccccccc--eEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCceecCc
Confidence                        0011223334444  44445222333333334689999999999999999999999999999999999


Q ss_pred             eEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCCC
Q 008787          500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSVS  553 (553)
Q Consensus       500 ~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~~  553 (553)
                      +|++|+||+|++.||.+|+|+. +|++|+|.+||++|.+||.|.+|+|+|.+++
T Consensus       427 lg~~d~dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~  479 (579)
T PLN03102        427 VGVIHPDGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHP  479 (579)
T ss_pred             eEEEcCCCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCc
Confidence            9999999999999999999996 8999999999999999999999999998763

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.3e-57  Score=483.23  Aligned_cols=451  Identities=26%  Similarity=0.375  Sum_probs=361.2

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|+++++++|+++|+++.    +     +.+||.||.++++++|..|.+.|+++||+|+++++|+++++++++|
T Consensus        31 ~~~l~~~~~~~~~~~p~~~a~~~~----~-----~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA  101 (573)
T PRK05605         31 DTTLVDLYDNAVARFGDRPALDFF----G-----ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYA  101 (573)
T ss_pred             cCCHHHHHHHHHHHCCCCeEEEeC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHH
Confidence            348999999999999999999864    3     4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHH--H-----------
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--K-----------  187 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------  187 (553)
                      |+++|++++|+++..+.+++.+++++++++++|+++.....+.+....  .....++.+.......  .           
T Consensus       102 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  179 (573)
T PRK05605        102 VLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRT--TPLETIVSVNMIAAMPLLQRLALRLPIPAL  179 (573)
T ss_pred             HHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhc--cccceeEeeecccccccccccccccccccc
Confidence            999999999999999999999999999999999988765544332211  1122232222110000  0           


Q ss_pred             ----HHHhhCCceeeeHHHHHhccccc---ccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhcccc
Q 008787          188 ----EMAVQTGIKPYSWDEFLHLGKVN---EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFE  260 (553)
Q Consensus       188 ----~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~  260 (553)
                          ...........+|.++.......   .........+++++++|||||||.||+|.+||.++...+......+..  
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~--  257 (573)
T PRK05605        180 RKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPG--  257 (573)
T ss_pred             cccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccc--
Confidence                00000112334566665432111   012233567899999999999999999999999998776543332210  


Q ss_pred             CCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhc
Q 008787          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (553)
Q Consensus       261 ~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~  338 (553)
                       ....++++++.+|++|.+|+.. ...++..|+++++.+. +++.+++.++++++|++.++|.+++.|.+......    
T Consensus       258 -~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~----  332 (573)
T PRK05605        258 -LGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG----  332 (573)
T ss_pred             -cCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC----
Confidence             1234689999999999999876 4457889999888876 99999999999999999999999999875321110    


Q ss_pred             hHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccc
Q 008787          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT  418 (553)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~t  418 (553)
                                                       .++        +++|.+++||+++++++.+.+.+.++.++++.||+|
T Consensus       333 ---------------------------------~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~T  371 (573)
T PRK05605        333 ---------------------------------VDL--------SGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLT  371 (573)
T ss_pred             ---------------------------------CCc--------hhccEEEECCCcCCHHHHHHHHHHhCCCeecccccc
Confidence                                             011        379999999999999999999988899999999999


Q ss_pred             cCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccC
Q 008787          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (553)
Q Consensus       419 E~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TG  498 (553)
                      |++++++.........++++|.+++++.++++| +++...+++.++.|||+++|+.++.||+++++.+.+.|.+|||+||
T Consensus       372 E~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TG  450 (573)
T PRK05605        372 ETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTG  450 (573)
T ss_pred             hhchhhhcCCcccCCcCCccccCCCCCEEEEEc-CCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccC
Confidence            999877765544444457899999999999999 5542355667899999999999999999999999998988999999


Q ss_pred             ceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       499 D~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |+|++|++|++++.||.+|+|++ +|++++|.+||++|..||.|.+++|+|.++
T Consensus       451 D~~~~~~~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~  503 (573)
T PRK05605        451 DVVVMEEDGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPR  503 (573)
T ss_pred             CEEEEcCCCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeec
Confidence            99999999999999999999996 899999999999999999999999999754

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=5.6e-57  Score=477.43  Aligned_cols=436  Identities=19%  Similarity=0.199  Sum_probs=351.5

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|+++++++|+++|+++.    +     +++||.||.++++++|..|.+.|+++|++|+++++|+++++++++|
T Consensus        22 ~~~l~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la   92 (527)
T TIGR02275        22 DKPLTDILRDQAARYPDAIAIICG----N-----RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFA   92 (527)
T ss_pred             CCcHHHHHHHHHHHCCCceEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence            467999999999999999999853    3     5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhh----hhhccccccccCccEEEEecCCchHHHHHHhhCCce
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (553)
                      |+++|++++++++..+.+++.++++.+++++++++.....    ..........+....++.......            
T Consensus        93 ~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  160 (527)
T TIGR02275        93 LLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV------------  160 (527)
T ss_pred             HHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC------------
Confidence            9999999999999999999999999999999999865321    111111111122333333322100            


Q ss_pred             eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChH
Q 008787          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (553)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  276 (553)
                      .......+... ..........++++++++|||||||.||+|.+||.++...+......+     .+..++++++.+|++
T Consensus       161 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~P~~  234 (527)
T TIGR02275       161 EAELFLWLESP-AEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----WLTQQTRYLCALPAA  234 (527)
T ss_pred             cchhhHHhhCc-CccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCCEEEECCChH
Confidence            00111111111 111222345678999999999999999999999999998877766555     677889999999999


Q ss_pred             HHHHHHH--HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 008787          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (553)
Q Consensus       277 ~~~g~~~--~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      |.+++..  .+.++..|+++++.+. ++..++..++++++|++.++|.++..+++......                   
T Consensus       235 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------------------  295 (527)
T TIGR02275       235 HNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR-------------------  295 (527)
T ss_pred             hhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC-------------------
Confidence            9999864  5667889999888765 89999999999999999999999988765322110                   


Q ss_pred             HHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCcc
Q 008787          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (553)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~  433 (553)
                                        .+        .+++|.+++||+++++++.+.+.+.+|.++++.||+||++............
T Consensus       296 ------------------~~--------~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~  349 (527)
T TIGR02275       296 ------------------YD--------LSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEI  349 (527)
T ss_pred             ------------------CC--------ccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCcccc
Confidence                              00        1389999999999999999999998999999999999965433222212222


Q ss_pred             ccCccCCCC-CCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEE
Q 008787          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (553)
Q Consensus       434 ~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~  511 (553)
                      ...++|+|+ ++.++++++ +++.  +++.|+.|||+++|++++.||+++++.+.+.+ .+|||+|||+|++++||++++
T Consensus       350 ~~~~~G~~~~~~~~v~i~d-~~g~--~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~  426 (527)
T TIGR02275       350 IFTTQGRPMSPDDEVRVVD-DHGN--PVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVV  426 (527)
T ss_pred             ccccCCCCCCCCceEEEEC-CCCC--CCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEE
Confidence            336789999 488999999 5543  45567999999999999999999999998888 789999999999999999999


Q ss_pred             EecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       512 ~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      .||.+|+|++ +|++++|.+||++|.+||+|.+|+|+|.++
T Consensus       427 ~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~  466 (527)
T TIGR02275       427 VGRAKDQINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPD  466 (527)
T ss_pred             Eecccceeec-CCEEECHHHHHHHHHhCCCceEEEEEecCC
Confidence            9999999996 899999999999999999999999999875

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.8e-57  Score=477.13  Aligned_cols=444  Identities=28%  Similarity=0.383  Sum_probs=374.8

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ...++.++|.++++.+|+++|+.+.   +      +.+||+||.+.+.++|+.|.+.|+++|++|+++++|+.+++++++
T Consensus         4 ~~~~l~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~l   74 (521)
T PRK06187          4 YPLTIGRILRHGARKHPDKEAVYFD---G------RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYF   74 (521)
T ss_pred             ccCCHHHHHHHHHHHCCCceEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4578999999999999999999875   3      369999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeee
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (553)
                      ||+++|++++++++..+.+++..+++.+++++++++......+.+.. ...+..+.++.+++....      ........
T Consensus        75 a~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~  147 (521)
T PRK06187         75 AVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAIL-PQLPTVRTVIVEGDGPAA------PLAPEVGE  147 (521)
T ss_pred             HHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHh-hccCCccEEEEecCcccc------cccccccc
Confidence            99999999999999999999999999999999999988766554332 233445556665543210      11123456


Q ss_pred             HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHH
Q 008787          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (553)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  279 (553)
                      +.+++..... .........+++++++|||||||.||+|.+||.++..........+     ++..++++++..|++|.+
T Consensus       148 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~  221 (521)
T PRK06187        148 YEELLAAASD-TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHVH  221 (521)
T ss_pred             HHHHhhcCCc-cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-----CCCCCCEEEEeCCchHHh
Confidence            6666654322 2223455678899999999999999999999999998887766655     788999999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 008787          280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (553)
Q Consensus       280 g~~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (553)
                      ++...+.++..|+++++++. ++..+++.++++++|.++++|+++..|++......                        
T Consensus       222 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~------------------------  277 (521)
T PRK06187        222 AWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYF------------------------  277 (521)
T ss_pred             hHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCc------------------------
Confidence            98876679999999998876 89999999999999999999999999875322100                        


Q ss_pred             cCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCc-----c
Q 008787          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-----C  433 (553)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~-----~  433 (553)
                                   .+        .+++|.+++||+++++++.+++.+.+++++++.||+||+|+++........     .
T Consensus       278 -------------~~--------~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  336 (521)
T PRK06187        278 -------------VD--------FSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWT  336 (521)
T ss_pred             -------------cC--------cchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccc
Confidence                         01        138999999999999999999999889999999999999877665543332     2


Q ss_pred             ccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEe
Q 008787          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (553)
Q Consensus       434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~G  513 (553)
                      ...++|.|+++.+++|++ +++...+.+.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|+++++|++++.|
T Consensus       337 ~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~~~~~G  415 (521)
T PRK06187        337 KRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITD  415 (521)
T ss_pred             cCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcCCCCEEEee
Confidence            457899999999999999 6665455444899999999999999999999999999999999999999999999999999


Q ss_pred             cccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       514 R~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |.+|+|++ +|.+++|.+||+++.++|+|.+++|++.++
T Consensus       416 R~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~  453 (521)
T PRK06187        416 RIKDVIIS-GGENIYPRELEDALYGHPAVAEVAVIGVPD  453 (521)
T ss_pred             cccceEEc-CCeEECHHHHHHHHHhCCCceEEEEEeccC
Confidence            99999997 899999999999999999999999998654

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.9e-57  Score=479.44  Aligned_cols=444  Identities=23%  Similarity=0.294  Sum_probs=348.2

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      +...++.++|+++++++|+++|+++.   ++.    +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~   85 (534)
T PRK05852         13 DFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVAL   85 (534)
T ss_pred             hhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHH
Confidence            44578999999999999999999864   321    47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceee
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (553)
                      |||+++|++++++++..+.+++.++++.++++++|++............   ......+.+......      .......
T Consensus        86 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~~  156 (534)
T PRK05852         86 LAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RWWPLTVNVGGDSGP------SGGTLSV  156 (534)
T ss_pred             HHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cccceeeeecccccc------ccccccc
Confidence            9999999999999999999999999999999999988653322111100   001111111111000      0000000


Q ss_pred             eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHH
Q 008787          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (553)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  278 (553)
                      .+..... . ...........++.++++|||||||.||+|.++|+++...+......+     .+..+|++++.+|++|.
T Consensus       157 ~~~~~~~-~-~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~  229 (534)
T PRK05852        157 HLDAATE-P-TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-----RLSPRDATVAVMPLYHG  229 (534)
T ss_pred             ccccccC-C-CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCcceEEEecCcchh
Confidence            0100000 0 000111122356789999999999999999999999998887776655     67889999999999999


Q ss_pred             HHHHH-HHHHHHcCcEEEEecC---ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 008787          279 LDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (553)
Q Consensus       279 ~g~~~-~~~~l~~g~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (553)
                      +++.. ++.++..|+++++...   ++..+++.++++++|.++++|.++..|.+.......                   
T Consensus       230 ~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------  290 (534)
T PRK05852        230 HGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPS-------------------  290 (534)
T ss_pred             HHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccc-------------------
Confidence            99876 5567888888887543   788999999999999999999999988653211000                   


Q ss_pred             HHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCC----
Q 008787          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD----  430 (553)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~----  430 (553)
                                              ....+++|.++++|+++++++.+++.+.++.++++.||+||++..++.....    
T Consensus       291 ------------------------~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~  346 (534)
T PRK05852        291 ------------------------GRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQ  346 (534)
T ss_pred             ------------------------cccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCcccccc
Confidence                                    0011489999999999999999999999999999999999998766543221    


Q ss_pred             CccccCccCCC--CCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCc
Q 008787          431 EMCMVGTAGPV--SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV  508 (553)
Q Consensus       431 ~~~~~~~~G~~--~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~  508 (553)
                      ......+.|.+  .+|++++++| +++.  +++.|+.|||+|+|+.++.||+++++.+.+.|.+|||+|||+|++|+||+
T Consensus       347 ~~~~~~~~g~~g~~~g~~~~i~d-~~g~--~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~dG~  423 (534)
T PRK05852        347 TENPVVSTGLVGRSTGAQIRIVG-SDGL--PLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGD  423 (534)
T ss_pred             ccCcccccccCCCCCCCeEEEEC-CCCC--CCCCCCceEEEEecCcccchhcCCcccchhhhcCCCcccCceEEEeCCCc
Confidence            01111234444  6999999999 5554  45667999999999999999999999999999999999999999999999


Q ss_pred             EEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       509 l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +++.||.+|+|+. +|.+++|.+||++|.+||+|.+|+|+|+++
T Consensus       424 l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~  466 (534)
T PRK05852        424 LSIRGRIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPD  466 (534)
T ss_pred             EEEEecchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCC
Confidence            9999999999996 899999999999999999999999999875

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.9e-57  Score=488.44  Aligned_cols=447  Identities=20%  Similarity=0.208  Sum_probs=344.0

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~  121 (553)
                      .|+.+.+..+  .+|+++|+++.   + ..+..+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||
T Consensus        86 ~n~~~~~~~~--~~~~~~Al~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~  159 (655)
T PRK03584         86 LNYAENLLRH--RRDDRPAIIFR---G-EDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLAT  159 (655)
T ss_pred             eeHHHHhhcc--CCCCCeEEEEE---C-CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            4566655543  58999999986   3 3455679999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhh---------hhhhccccccccCccEEEEecCCchHHHHHHhh
Q 008787          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (553)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (553)
                      +++|++++|+++.++.+++.++++.++++++|+++...         ..+.+.. ...+.+..++.+......   ....
T Consensus       160 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~---~~~~  235 (655)
T PRK03584        160 ASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELR-AALPSLEHVVVVPYLGPA---AAAA  235 (655)
T ss_pred             HHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHH-hcCCCccEEEEEecCCCc---cccc
Confidence            99999999999999999999999999999999976532         1111111 122333444444322100   0000


Q ss_pred             CCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHH-HhhchhhhccccCCCCCCcEEEE
Q 008787          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTVDDVYLS  271 (553)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~  271 (553)
                      .......|++++...............+++++|+|||||||.||+|++||.+++.. .......+     ++..+|++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~  310 (655)
T PRK03584        236 ALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-----DLGPGDRFFW  310 (655)
T ss_pred             ccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence            11123456666542222222334456789999999999999999999999987643 44333333     6778899999


Q ss_pred             ecChHHHHHHHHHHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 008787          272 FLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (553)
Q Consensus       272 ~~p~~~~~g~~~~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (553)
                      ..++.|..+. ..+.++..|+++++.++     ++..+++.++++++|++.++|+++..+.+...               
T Consensus       311 ~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---------------  374 (655)
T PRK03584        311 YTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGL---------------  374 (655)
T ss_pred             cCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC---------------
Confidence            9999887543 34568999999999763     78999999999999999999999988753100               


Q ss_pred             HHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc--CCceEeeeccccCCCce
Q 008787          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPT  424 (553)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~~~i~~~YG~tE~g~~~  424 (553)
                                         .+ ....++        ++||.+++||+++++++.+++.+.+  ++.+.+.||+||+++..
T Consensus       375 -------------------~~-~~~~~l--------~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~  426 (655)
T PRK03584        375 -------------------VP-GETHDL--------SALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCF  426 (655)
T ss_pred             -------------------Cc-cccCCh--------hheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhccc
Confidence                               00 001112        3899999999999999999999887  47899999999986544


Q ss_pred             eeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecC--CccccccCChhhhh--hh-c--cCCcccc
Q 008787          425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ES-I--IDGWFHT  497 (553)
Q Consensus       425 ~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~--~~~~gy~~~~~~~~--~~-~--~~g~~~T  497 (553)
                      ...........+++|.|.+|++++|+| +++...   .|+.|||+|+||  +++.||+++++.++  .. |  .+|||+|
T Consensus       427 ~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~---~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~T  502 (655)
T PRK03584        427 VGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV---VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRH  502 (655)
T ss_pred             ccCCCCCCcCCCccCCCcCCceeEEEC-CCCCCC---CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeec
Confidence            333222233457899999999999999 655433   578999999996  78999999987543  22 2  3688999


Q ss_pred             CceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       498 GD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ||+|++|+||+|+++||.||+|++ +|++|+|.|||++|.+||.|.+|+|+|.++
T Consensus       503 GDl~~~d~dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~  556 (655)
T PRK03584        503 GDWIEITEHGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEW  556 (655)
T ss_pred             CCeEEECCCCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEc
Confidence            999999999999999999999996 899999999999999999999999999875

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=9e-57  Score=477.72  Aligned_cols=456  Identities=23%  Similarity=0.293  Sum_probs=362.6

Q ss_pred             CCCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCC
Q 008787           20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE   99 (553)
Q Consensus        20 ~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~   99 (553)
                      ..+.+||+.+.....    +...|+.+.|.++++++|+++|+.+.   .  ++  +.+||.||.+++.++|..|.+.|++
T Consensus        10 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~a~~~p~~~a~~~~---~--~~--~~~Ty~~l~~~~~~la~~L~~~g~~   78 (546)
T PLN02330         10 DNEHIFRSRYPSVPV----PDKLTLPDFVLQDAELYADKVAFVEA---V--TG--KAVTYGEVVRDTRRFAKALRSLGLR   78 (546)
T ss_pred             ccceeeccCCCCCCC----CCCCcHHHHHhhhhhcCCCccEEEec---C--CC--CcccHHHHHHHHHHHHHHHHHhCCC
Confidence            456788877666532    23588999999999999999999853   2  12  4799999999999999999999999


Q ss_pred             CCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEe
Q 008787          100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCF  179 (553)
Q Consensus       100 ~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (553)
                      +||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++++++.....+...      .. .++.+
T Consensus        79 ~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~------~~-~~i~~  151 (546)
T PLN02330         79 KGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL------GL-PVIVL  151 (546)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc------CC-cEEEe
Confidence            999999999999999999999999999999999999999999999999999999998876655321      11 12333


Q ss_pred             cCCchHHHHHHhhCCceeeeHHHHHhcccccc--cccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhc
Q 008787          180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD  257 (553)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~  257 (553)
                      +...          ......|.+++.......  .......++++++++|||||||.||+|++||.++...+....... 
T Consensus       152 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-  220 (546)
T PLN02330        152 GEEK----------IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV-  220 (546)
T ss_pred             cCCC----------CCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc-
Confidence            3211          011234666554432211  122334578899999999999999999999999987654321111 


Q ss_pred             cccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHH
Q 008787          258 QFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE  335 (553)
Q Consensus       258 ~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~  335 (553)
                        .......+..+..+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|.+.++|+++..+++...    
T Consensus       221 --~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~----  294 (546)
T PLN02330        221 --GPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPI----  294 (546)
T ss_pred             --CccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcc----
Confidence              112234568899999999999875 5567888999888876 99999999999999999999999998864210    


Q ss_pred             hhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEee
Q 008787          336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQG  414 (553)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~  414 (553)
                                                       .+.+++..      .++|.+++||+++++++.+++.+.+ +.++++.
T Consensus       295 ---------------------------------~~~~~~~~------~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~  335 (546)
T PLN02330        295 ---------------------------------VEEFDLSK------LKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEA  335 (546)
T ss_pred             ---------------------------------ccccccch------heeeeEEEcCCcCCHHHHHHHHHHcCCCeEEec
Confidence                                             00000100      1579999999999999999999988 8999999


Q ss_pred             eccccCCCceeeccCCC----ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc
Q 008787          415 YGLTETCGPTTVCFPDE----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI  490 (553)
Q Consensus       415 YG~tE~g~~~~~~~~~~----~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~  490 (553)
                      ||+||++.+........    .....++|+|+|++++++++ ++++ .+++.|+.|||+|+|+.++.||+++++.+.+.+
T Consensus       336 YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~-~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~  413 (546)
T PLN02330        336 YGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFID-PDTG-RSLPKNTPGELCVRSQCVMQGYYNNKEETDRTI  413 (546)
T ss_pred             ccccccccceecCCCccccccccccCccccccCCcEEEEEe-CCCC-ccCCCCCceEEEEecchhhhhhccCccchhhhc
Confidence            99999886554332111    12336899999999999999 4333 455677999999999999999999999988877


Q ss_pred             -cCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          491 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       491 -~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                       .+|||+|||+|++++||++++.||.+|+|++ +|++++|.+||++|.+||.|.+++|+|+++
T Consensus       414 ~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~  475 (546)
T PLN02330        414 DEDGWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPD  475 (546)
T ss_pred             cCCCceecccEEEEeCCCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccc
Confidence             6899999999999999999999999999997 799999999999999999999999999764

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-56  Score=479.22  Aligned_cols=457  Identities=21%  Similarity=0.297  Sum_probs=362.4

Q ss_pred             CCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHH
Q 008787           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWV  115 (553)
Q Consensus        37 ~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~-~gl~~gd~V~l~~~n~~~~~  115 (553)
                      +.....|+.++|++++..+|+++|+++.   +.   .++.+||.||.+++.++|.+|.+ .|+++||+|+++++|+.+++
T Consensus         5 ~~~~~~~~~~~l~~~a~~~~~~~a~~~~---~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~   78 (576)
T PRK05620          5 MQDVPLSLTRILEYGSTVHGDTTVTTWG---GA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHL   78 (576)
T ss_pred             hhcCCCcHHHHHHHHHHhCCCceEEEEc---CC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHH
Confidence            3445578999999999999999999864   21   24789999999999999999986 79999999999999999999


Q ss_pred             HHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCc
Q 008787          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (553)
Q Consensus       116 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (553)
                      ++++||+++|++++++++..+.+++.++++.+++++++++......+.+... ..+....++..+...............
T Consensus        79 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~  157 (576)
T PRK05620         79 EVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILK-ECPCVRAVVFIGPSDADSAAAHMPEGI  157 (576)
T ss_pred             HHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHh-hCccccEEEEecCcccccchhcccccc
Confidence            9999999999999999999999999999999999999999876665433322 223344444444321110011111122


Q ss_pred             eeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecCh
Q 008787          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (553)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  275 (553)
                      ...+|.++.+... .........++++++++|||||||.||+|.++|+++..........   ....+..++++++.+|+
T Consensus       158 ~~~~~~~l~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~---~~~~~~~~~~~l~~~pl  233 (576)
T PRK05620        158 KVYSYEALLDGRS-TVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTT---DSLAVTHGESFLCCVPI  233 (576)
T ss_pred             ccccHHHHhhcCC-CcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhh---hhcCCCCCCeEEEeCCh
Confidence            3456777775432 2222334567899999999999999999999999986554432111   01256788999999999


Q ss_pred             HHHHHHHHHHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 008787          276 AHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (553)
Q Consensus       276 ~~~~g~~~~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      +|.+++...+.++..|+++++.+.  ++..+++.++++++|++.++|.++..++........                  
T Consensus       234 ~h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------  295 (576)
T PRK05620        234 YHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPP------------------  295 (576)
T ss_pred             HHhhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCc------------------
Confidence            999998877788899999888753  899999999999999999999999887643211000                  


Q ss_pred             HHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC--
Q 008787          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--  431 (553)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~--  431 (553)
                                         +        ..++|.+++||+++++++.+.+++.+++++++.||+||++..+.......  
T Consensus       296 -------------------~--------~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~  348 (576)
T PRK05620        296 -------------------E--------RMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGV  348 (576)
T ss_pred             -------------------c--------cCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCcc
Confidence                               0        02799999999999999999999988999999999999988765443221  


Q ss_pred             -----ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhh----------------hhhc
Q 008787          432 -----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT----------------RESI  490 (553)
Q Consensus       432 -----~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~----------------~~~~  490 (553)
                           .....+.|++.+++++++++ + +...+..+++.|||+++|+.++.||+++++.+                ...+
T Consensus       349 ~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~  426 (576)
T PRK05620        349 SGEARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRF  426 (576)
T ss_pred             ccccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhccc
Confidence                 01124789999999999998 5 44444445678999999999999999999877                2223


Q ss_pred             -cCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          491 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       491 -~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                       .+|||+|||+|++++||++++.||.+|+|+. +|++++|.+||++|.+||.|.+|+|+|.++
T Consensus       427 ~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~  488 (576)
T PRK05620        427 TADGWLRTGDVGSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYPD  488 (576)
T ss_pred             ccCCcEecCceEEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEeccC
Confidence             5789999999999999999999999999995 899999999999999999999999999865

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.8e-56  Score=474.40  Aligned_cols=445  Identities=21%  Similarity=0.311  Sum_probs=355.1

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|+.+++++|+++++.+.     .++.++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++|
T Consensus         9 ~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la   83 (539)
T PRK07008          9 PLLISSLIAHAARHAGDTEIVSRR-----VEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYG   83 (539)
T ss_pred             CCCHHHHHHHHHhhCCCceEEEee-----ccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            357899999999999998888653     223356899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++..+.+++..+++.+++++++++......+.+... .......++...+....     ........++
T Consensus        84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  157 (539)
T PRK07008         84 VSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAP-QCPNVKGWVAMTDAAHL-----PAGSTPLLCY  157 (539)
T ss_pred             HHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHh-hCCCceEEEEEccCCcc-----ccCCcccccH
Confidence            99999999999999999999999999999999999876554433221 22334444444332110     0001234566


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHh--hchhhhccccCCCCCCcEEEEecChHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS--GVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~  278 (553)
                      +++...... ........++++++++|||||||.||+|++||++++....  .+...+     ++..+|++++..|++|.
T Consensus       158 ~~l~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~  231 (539)
T PRK07008        158 ETLVGAQDG-DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-----GLSARDAVLPVVPMFHV  231 (539)
T ss_pred             HHHhcccCC-CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-----CCCCCceEEecCchHHh
Confidence            666544322 1223345678899999999999999999999999865332  222222     56788999999999998


Q ss_pred             HHHHHHHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787          279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (553)
Q Consensus       279 ~g~~~~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (553)
                      +++...+.++..|+++++.+.  +++.+++.++++++|++.++|.++..+++.....                       
T Consensus       232 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~-----------------------  288 (539)
T PRK07008        232 NAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREA-----------------------  288 (539)
T ss_pred             hhHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhccccc-----------------------
Confidence            887666777889999988754  8999999999999999999999999886532111                       


Q ss_pred             hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC-----
Q 008787          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----  431 (553)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-----  431 (553)
                                    ..++        +++|.++++|+++++++.+.+.+.++.++++.||+||++..+..+....     
T Consensus       289 --------------~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~  346 (539)
T PRK07008        289 --------------GLRF--------STLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQL  346 (539)
T ss_pred             --------------CCCc--------ccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccC
Confidence                          0011        3899999999999999999999889999999999999987655432110     


Q ss_pred             -----ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccC
Q 008787          432 -----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN  506 (553)
Q Consensus       432 -----~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~d  506 (553)
                           .....++|+|+|++++++++ +++...+.+.++.|||+++|++++.||++++.   ..+.+|||+|||+|++|+|
T Consensus       347 ~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~~g~~~TGD~~~~~~d  422 (539)
T PRK07008        347 PLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDAD  422 (539)
T ss_pred             CchhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhcCCCcccCceEEEcCC
Confidence                 11235789999999999999 66655555445689999999999999999883   3456899999999999999


Q ss_pred             CcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |++++.||.+|+|+. +|++++|.+||+++..||.|.+++|+|.++
T Consensus       423 g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~  467 (539)
T PRK07008        423 GFMQITDRSKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAH  467 (539)
T ss_pred             CcEEEeecccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCC
Confidence            999999999999995 899999999999999999999999999764

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=6.7e-57  Score=485.86  Aligned_cols=447  Identities=19%  Similarity=0.181  Sum_probs=337.2

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~  121 (553)
                      .|+.+.+..   +.++++|+++.   + .++..+++||+||.+++.++|+.|+++|+++||+|+++++|++++++++|||
T Consensus        87 ~n~~~~~~~---~~~~~~a~~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~  159 (652)
T TIGR01217        87 LNYAENLLR---AAGTEPALLYV---D-ETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLAT  159 (652)
T ss_pred             eeHHHHHhc---cCCCCeEEEEE---C-CCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            455555543   35789999886   3 3444578999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhh---------hhhhccccccccCccEEEEecCCchHHHHHHhh
Q 008787          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (553)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (553)
                      +++|++++|+++.++++++.+++++++++++|+.+...         ..+.+.. ...+.+..++.+.........  ..
T Consensus       160 ~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~--~~  236 (652)
T TIGR01217       160 ASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVR-KELPTLRAVVHIPYLGPRETE--AP  236 (652)
T ss_pred             HHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHH-hcCCCccEEEEEeCCCCcccc--cc
Confidence            99999999999999999999999999999999986531         2222211 122334445554322100000  00


Q ss_pred             CCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHH-HhhchhhhccccCCCCCCcEEEE
Q 008787          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTVDDVYLS  271 (553)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~  271 (553)
                      ...+...|+++................+++++|+|||||||.||||++||.+++.. .......+     ++..+|++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~  311 (652)
T TIGR01217       237 KIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-----DLGPGDRLFY  311 (652)
T ss_pred             cccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-----CCCCCcEEEE
Confidence            00123456776544211122223456789999999999999999999999986543 33332233     6788899999


Q ss_pred             ecChHHHHHHHHHHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 008787          272 FLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (553)
Q Consensus       272 ~~p~~~~~g~~~~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (553)
                      ..|+.|..+. ..+.++..|++++++++     ++..+++.++++++|++..+|.++..+.+.-.               
T Consensus       312 ~~~~~~~~~~-~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~---------------  375 (652)
T TIGR01217       312 YTTTGWMMWN-WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGV---------------  375 (652)
T ss_pred             eCCcchhhhH-HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCC---------------
Confidence            9999997542 34468999999999863     67899999999999998777776655432000               


Q ss_pred             HHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC--CceEeeeccccCCCce
Q 008787          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLTETCGPT  424 (553)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~--~~i~~~YG~tE~g~~~  424 (553)
                                         .+ ....++        ++||.+++||+++++++.+++.+.++  ..+.+.||+||+++..
T Consensus       376 -------------------~~-~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~  427 (652)
T TIGR01217       376 -------------------HP-ARTHDL--------SALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCF  427 (652)
T ss_pred             -------------------Cc-cccCCh--------hheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccc
Confidence                               00 011122        38999999999999999999988875  4577899999975433


Q ss_pred             eeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecC--CccccccCChhhhh--hh-c--cCCcccc
Q 008787          425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ES-I--IDGWFHT  497 (553)
Q Consensus       425 ~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~--~~~~gy~~~~~~~~--~~-~--~~g~~~T  497 (553)
                      ....+......+++|.|.+|++++++| +++...   .|+.|||+++||  .++.||+++++.++  +. |  .+|||+|
T Consensus       428 ~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~---~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~t  503 (652)
T TIGR01217       428 AGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV---TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRH  503 (652)
T ss_pred             cCCCCCCCCcCCccCCCcCCCceEEEC-CCCCCC---CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEc
Confidence            322222233347889999999999999 665543   378999999996  58899999998654  22 3  2689999


Q ss_pred             CceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       498 GD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ||+|++|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|+|+++
T Consensus       504 GDlg~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~  557 (652)
T TIGR01217       504 GDWITLTPRGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQ  557 (652)
T ss_pred             CCcEEECCCCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeec
Confidence            999999999999999999999996 899999999999999999999999999875

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2e-56  Score=474.67  Aligned_cols=436  Identities=25%  Similarity=0.282  Sum_probs=363.0

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      -+|+.+.|..+++++|+++|+.+.   +      +.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++|
T Consensus        16 ~~n~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a   86 (542)
T PRK07786         16 RQNWVNQLARHALMQPDAPALRFL---G------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLA   86 (542)
T ss_pred             ccCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            588999999999999999999864   2      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++..+.+++..+++.+++++++++......+.. .....+....++.+++...          ....++
T Consensus        87 ~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~  155 (542)
T PRK07786         87 ANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATA-VRDIVPLLSTVVVAGGSSD----------DSVLGY  155 (542)
T ss_pred             HHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHH-hhhccCccceEEEecCCCc----------ccccCH
Confidence            99999999999999999999999999999999998876554422 2222234444555443211          123456


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCC-CCCcEEEEecChHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM-TVDDVYLSFLPLAHIL  279 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~  279 (553)
                      +++...... .........+++++++|||||||.||+|.+||+++...+......+     ++ ..++++++..|++|.+
T Consensus       156 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~  229 (542)
T PRK07786        156 EDLLAEAGP-AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-----GADINSDVGFVGVPLFHIA  229 (542)
T ss_pred             HHHhhccCC-CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-----CCCCCCceEEEecchHHHH
Confidence            666543322 2223345667899999999999999999999999988877655544     44 5678999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEec---CChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787          280 DRVIEEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (553)
Q Consensus       280 g~~~~~~~l~~g~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (553)
                      |+...+.++..|+++++.+   .++..+++.++++++|.++++|.++..+........                      
T Consensus       230 g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~----------------------  287 (542)
T PRK07786        230 GIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP----------------------  287 (542)
T ss_pred             HHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc----------------------
Confidence            9877888899999998865   289999999999999999999999999865211000                      


Q ss_pred             hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCC-ccc
Q 008787          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MCM  434 (553)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~-~~~  434 (553)
                                   .           ..++|.+++||+++++++.+++++.+ +.++++.||+||++.+.+...... ...
T Consensus       288 -------------~-----------~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~  343 (542)
T PRK07786        288 -------------R-----------DLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRK  343 (542)
T ss_pred             -------------c-----------CcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCccccccc
Confidence                         0           01689999999999999999999988 788999999999987766543322 234


Q ss_pred             cCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEec
Q 008787          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR  514 (553)
Q Consensus       435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR  514 (553)
                      ..++|+|++++.+++++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+|++++||++++.||
T Consensus       344 ~~~~G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~~~i~GR  420 (542)
T PRK07786        344 LGSVGKVIPTVAARVVD-ENMN--DVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDR  420 (542)
T ss_pred             CCCccccCCCceEEEEC-CCCC--CCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcCCceEEEEec
Confidence            47899999999999999 5543  45567899999999999999999999999999999999999999999999999999


Q ss_pred             ccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          515 KKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       515 ~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      .+|+|++ +|++++|.+||++|.+||.|.+|+|+|.++
T Consensus       421 ~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~  457 (542)
T PRK07786        421 KKDMIIS-GGENIYCAEVENVLASHPDIVEVAVIGRAD  457 (542)
T ss_pred             ccceEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccC
Confidence            9999996 899999999999999999999999999753

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=3.9e-56  Score=473.34  Aligned_cols=437  Identities=22%  Similarity=0.293  Sum_probs=355.1

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~  121 (553)
                      .++.++|++.++++|+++|+++.   ++     +.+||+||.+++.++|++|++.|+++||+|+++++|+++++++++||
T Consensus        23 ~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~   94 (547)
T PRK06087         23 ASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLAC   94 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            57999999999999999999854   33     47999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhh-----hhhhccccccccCccEEEEecCCchHHHHHHhhCCce
Q 008787          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (553)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (553)
                      +++|++++|+++..+.+++.++++.+++++++++....     ..+... .........++.++....         ...
T Consensus        95 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~  164 (547)
T PRK06087         95 LKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPL-QNQLPQLQQIVGVDKLAP---------ATS  164 (547)
T ss_pred             HHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHH-HhhCCCCcEEEEeCCcCC---------CcC
Confidence            99999999999999999999999999999999976321     111111 112233334444443211         011


Q ss_pred             eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChH
Q 008787          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (553)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  276 (553)
                      ..++.++....... ........+++++|+|||||||.||+|.+||.++......+...+     ++..++++++..|++
T Consensus       165 ~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~  238 (547)
T PRK06087        165 SLSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-----NLTWQDVFMMPAPLG  238 (547)
T ss_pred             ccCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeEEEecchH
Confidence            22455554432211 122234678999999999999999999999999988777655544     678899999999999


Q ss_pred             HHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 008787          277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (553)
Q Consensus       277 ~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (553)
                      |.+|+.. .+.+++.|+++++.+. ++..+++.++++++++++++|+.+..+++......                    
T Consensus       239 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~--------------------  298 (547)
T PRK06087        239 HATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQP--------------------  298 (547)
T ss_pred             HHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCC--------------------
Confidence            9999865 5667888999988876 99999999999999999998888777654221100                    


Q ss_pred             HHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC-cc
Q 008787          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MC  433 (553)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-~~  433 (553)
                                               ..++++|.+++||+++++++.+.+.+. ++++++.||+||++.+........ ..
T Consensus       299 -------------------------~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~  352 (547)
T PRK06087        299 -------------------------ADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSR  352 (547)
T ss_pred             -------------------------CCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhh
Confidence                                     011489999999999999999988775 999999999999988766544322 22


Q ss_pred             ccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEEE
Q 008787          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKII  512 (553)
Q Consensus       434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~  512 (553)
                      ...++|+|++++.++++| +++.  +++.|+.|||+++|+.++.||+++++.+...+ .+|||+|||+|+++++|++++.
T Consensus       353 ~~~~~G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~  429 (547)
T PRK06087        353 FMHTDGYAAAGVEIKVVD-EARK--TLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKIT  429 (547)
T ss_pred             cCCcCCccCCCceEEEEc-CCCC--CCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEE
Confidence            235789999999999998 5553  45677899999999999999999999998887 6899999999999999999999


Q ss_pred             ecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       513 GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ||.+|+|+. +|++++|.+||++|..+|+|.+++|+|.++
T Consensus       430 GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~  468 (547)
T PRK06087        430 GRKKDIIVR-GGENISSREVEDILLQHPKIHDACVVAMPD  468 (547)
T ss_pred             ecchhhhhc-CCEEECHHHHHHHHHhCCCeeEEEEEecCC
Confidence            999999996 899999999999999999999999999764

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-56  Score=473.41  Aligned_cols=438  Identities=24%  Similarity=0.319  Sum_probs=354.7

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ...|+.+.|...++++|+++|+++.    +     +++||.||.+++.++|..|.+.|+++|++|+++++|+++++++++
T Consensus         5 ~~~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~l   75 (528)
T PRK07470          5 RVMNLAHFLRQAARRFPDRIALVWG----D-----RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMF   75 (528)
T ss_pred             cCCCHHHHHHHHHHHCCCceEEEEC----C-----ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4578999999999999999999863    2     479999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeee
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (553)
                      ||+++|++++++++..+.+++.++++.++++.++++........... ........++.+....            ...+
T Consensus        76 A~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~  142 (528)
T PRK07470         76 AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVR-AASPDLTHVVAIGGAR------------AGLD  142 (528)
T ss_pred             HHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHH-hhCCcCceEEEeCCCc------------cccc
Confidence            99999999999999999999999999999999999987654432211 1122333444443321            1234


Q ss_pred             HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHH
Q 008787          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (553)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  279 (553)
                      +.+++..............++++++++|||||||.||+|.++|.++...+.......   ..+....|+++..+|++|.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~  219 (528)
T PRK07470        143 YEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSHGA  219 (528)
T ss_pred             HHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchhHH
Confidence            555554332222233445678999999999999999999999999876544322111   11456788999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEecC---ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787          280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (553)
Q Consensus       280 g~~~~~~~l~~g~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (553)
                      ++...+ .+..|+++++.+.   +++.+++.++++++|++.++|.+++.+.+....                        
T Consensus       220 ~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------  274 (528)
T PRK07470        220 GIHQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAV------------------------  274 (528)
T ss_pred             HHHHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCc------------------------
Confidence            986544 5667777766643   899999999999999999999999887642110                        


Q ss_pred             hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCC------
Q 008787          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD------  430 (553)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~------  430 (553)
                                   ...        ..+++|.+++||++++++..+++.+.++.++++.||+||+++.++.....      
T Consensus       275 -------------~~~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~  333 (528)
T PRK07470        275 -------------DRY--------DHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAED  333 (528)
T ss_pred             -------------CCC--------CCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccccc
Confidence                         000        11489999999999999999999888899999999999998766644321      


Q ss_pred             -CccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcE
Q 008787          431 -EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV  509 (553)
Q Consensus       431 -~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l  509 (553)
                       .....+++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++++||++
T Consensus       334 ~~~~~~~~~G~~~~g~~~~i~d-~~~~--~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l  410 (528)
T PRK07470        334 GPDARIGTCGFERTGMEVQIQD-DEGR--ELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFL  410 (528)
T ss_pred             cccceeeccCcccCCcEEEEEC-CCCC--CCCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEccCCeE
Confidence             112336889999999999999 5544  455778999999999999999999999998889999999999999999999


Q ss_pred             EEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       510 ~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ++.||.+|+|++ +|++++|.+||++|.++|.|.+|+|+|.++
T Consensus       411 ~~~GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~  452 (528)
T PRK07470        411 YITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPD  452 (528)
T ss_pred             EEeCCccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccC
Confidence            999999999996 899999999999999999999999999865

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.2e-56  Score=471.24  Aligned_cols=440  Identities=25%  Similarity=0.315  Sum_probs=361.9

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|...++++|+++|+++.   +      +.+||.||.+.+.++|..|.+.|+++||+|+++++|+++++++++|
T Consensus        10 ~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a   80 (523)
T PRK08316         10 RQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLA   80 (523)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            477999999999999999999875   3      4899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++..+.+++..+++.+++++++++......+.+..................        .........+
T Consensus        81 ~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~  152 (523)
T PRK08316         81 CARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGG--------REAPGGWLDF  152 (523)
T ss_pred             HHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccc--------cccccchhhH
Confidence            99999999999999999999999999999999999887665543321111000000000000        0001123445


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                      +++...... .........+++++++|||||||.||+|.+||.+++.........+     ++..++++++.+|++|.++
T Consensus       153 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g  226 (523)
T PRK08316        153 ADWAEAGSV-AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-----DMSADDIPLHALPLYHCAQ  226 (523)
T ss_pred             HHHHhcCCC-ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCCceEEEccCCchhhh
Confidence            554443221 1233445778999999999999999999999999988877665555     6788999999999999999


Q ss_pred             HHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 008787          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (553)
Q Consensus       281 ~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (553)
                      +.. +..++..|+++++.+. +++.+++.++++++|++.++|.++..+.+...                           
T Consensus       227 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------------  279 (523)
T PRK08316        227 LDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPD---------------------------  279 (523)
T ss_pred             HHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcc---------------------------
Confidence            875 4456889999999865 99999999999999999999999988764211                           


Q ss_pred             cCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCC-ccccC
Q 008787          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MCMVG  436 (553)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~-~~~~~  436 (553)
                                ....++        +++|.+++||++++.++.+.+++.+ +.++++.||+||++.++....... ....+
T Consensus       280 ----------~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  341 (523)
T PRK08316        280 ----------FDTRDL--------SSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPG  341 (523)
T ss_pred             ----------cccCCc--------ccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccC
Confidence                      001111        3899999999999999999999987 789999999999998776654332 23447


Q ss_pred             ccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEeccc
Q 008787          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  516 (553)
Q Consensus       437 ~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~  516 (553)
                      ++|++++++++++++ +++.  +++.|+.|||+++|++++.||+++++.+++.|.+|||+|||+|++++||.+++.||.+
T Consensus       342 ~~G~~~~~~~~~i~~-~~~~--~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~i~gR~~  418 (523)
T PRK08316        342 SAGRPVLNVETRVVD-DDGN--DVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKK  418 (523)
T ss_pred             CcccCCCCcEEEEEc-CCCC--CCCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcCCceEEEecccc
Confidence            899999999999999 5553  4556789999999999999999999999999999999999999999999999999999


Q ss_pred             CceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          517 NLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       517 d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |+|++ +|++++|.+||+.|.++|+|.+++|+|.++
T Consensus       419 ~~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~  453 (523)
T PRK08316        419 DMIKT-GGENVASREVEEALYTHPAVAEVAVIGLPD  453 (523)
T ss_pred             cEEEe-CCeEECHHHHHHHHHhCCChheEeEecccC
Confidence            99997 899999999999999999999999999764

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=5.5e-56  Score=473.14  Aligned_cols=452  Identities=23%  Similarity=0.317  Sum_probs=351.9

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~-gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ..++.+.|.++++++|+++|+++.    +     +.+||.||.++++++|.+|.+. |+++||+|+++++|++++++++|
T Consensus        23 ~~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~l   93 (562)
T PRK12492         23 YKSVVEVFERSCKKFADRPAFSNL----G-----VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVF   93 (562)
T ss_pred             cCcHHHHHHHHHHhCCCCeeEecC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            358999999999999999999753    3     4899999999999999999985 99999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEec--CCchHHHHH--------
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT--SLTAEQKEM--------  189 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------  189 (553)
                      ||+++|++++++++..+.+++.++++.++++++++++.....+......  .....++...  +........        
T Consensus        94 a~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (562)
T PRK12492         94 GALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPD--TGIEYLIEAKMGDLLPAAKGWLVNTVVDK  171 (562)
T ss_pred             HHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhc--cCceEEEeechhhccccccchhccccccc
Confidence            9999999999999999999999999999999999886543333221111  0111111100  000000000        


Q ss_pred             -----HhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccC---
Q 008787          190 -----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED---  261 (553)
Q Consensus       190 -----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~---  261 (553)
                           .........+|+++............+...+++++|+|||||||.||+|+++|+++...+......+.....   
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~  251 (562)
T PRK12492        172 VKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQ  251 (562)
T ss_pred             ccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccc
Confidence                 000001224555555433222222334567899999999999999999999999998776655443311100   


Q ss_pred             -CCCC-CcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHh
Q 008787          262 -KMTV-DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE  336 (553)
Q Consensus       262 -~~~~-~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~  336 (553)
                       .... .+++++.+|++|.+++.. ++..+..|.+.++...  ++..++..++++++|++.++|+++..|++...     
T Consensus       252 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-----  326 (562)
T PRK12492        252 PLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPG-----  326 (562)
T ss_pred             ccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcC-----
Confidence             0222 357789999999999875 4456778887766543  88999999999999999999999988764210     


Q ss_pred             hchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeec
Q 008787          337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG  416 (553)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG  416 (553)
                                                      ...+++        +++|.+++||+++++++.+.|++.+++++++.||
T Consensus       327 --------------------------------~~~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG  366 (562)
T PRK12492        327 --------------------------------FKDLDF--------SALKLTNSGGTALVKATAERWEQLTGCTIVEGYG  366 (562)
T ss_pred             --------------------------------cccccc--------cceeEEEeccccCCHHHHHHHHHHhCCceeeccC
Confidence                                            000111        3899999999999999999999988999999999


Q ss_pred             cccCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCcc
Q 008787          417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF  495 (553)
Q Consensus       417 ~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~  495 (553)
                      +||++.+++..........+++|+|+++++++|++ +++  .+++.|+.|||+|+|+.++.||+++++.+.+.| .+|||
T Consensus       367 ~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~  443 (562)
T PRK12492        367 LTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDG--NELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWF  443 (562)
T ss_pred             ccccCceeeecCCcccccCCccceecCCCEEEEEC-CCC--CCCCCCCceEEEEeCCccccccccCchhhhhcccCCCce
Confidence            99998877665544333447899999999999999 554  345677899999999999999999999998888 68999


Q ss_pred             ccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       496 ~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|||+|+++++|++++.||.+|+|++ +|++++|.+||+.|.+||.|.+++|+|.++
T Consensus       444 ~TGD~g~~~~~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~  499 (562)
T PRK12492        444 KTGDIAVIDPDGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPD  499 (562)
T ss_pred             ecCcEEEECCCCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccC
Confidence            99999999999999999999999997 799999999999999999999999999764

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=1.2e-55  Score=478.04  Aligned_cols=450  Identities=18%  Similarity=0.153  Sum_probs=337.9

Q ss_pred             ccH-HHHHHHHHHcCCCCCceeeecccCCC--CCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787           42 NTA-WDIFSMSVQKYPGNRMLGWRPFVDGK--FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        42 ~~l-~~~l~~~a~~~p~~~al~~~~~~d~~--~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      .|+ ..+|.++++++|+++|+++.   +..  ++..+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++
T Consensus       174 ln~~~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~  250 (728)
T PLN03052        174 LNVAECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIY  250 (728)
T ss_pred             eEHHHHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            444 44666666678999999986   331  234578999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhh-----hhccccccccCccEEEEecCCchHHHHHHhhC
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE-----LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (553)
                      |||+++|++++|+++..+++++.+++++++++++|+.+.....     ..........  ..++++....... .  ...
T Consensus       251 LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~-~--~~~  325 (728)
T PLN03052        251 LAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSV-R--VKL  325 (728)
T ss_pred             HHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCcc-c--ccc
Confidence            9999999999999999999999999999999999998753210     0000000001  1222222111000 0  000


Q ss_pred             CceeeeHHHHHhcccc----cccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEE
Q 008787          194 GIKPYSWDEFLHLGKV----NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (553)
Q Consensus       194 ~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~  269 (553)
                      .....+|++++.....    ..........+++++|+|||||||.||+|+++|.+++.........+     ++..+|++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-----~l~~~d~~  400 (728)
T PLN03052        326 REGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-----DIRKGDIV  400 (728)
T ss_pred             ccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-----CCCCCcEE
Confidence            0123457776643211    11111223568999999999999999999999998876655443333     67889999


Q ss_pred             EEecChHHHHHHHHHHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 008787          270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (553)
Q Consensus       270 ~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (553)
                      ++..|+.|..+....+.++..|+++++.++  ++..+++.++++++|++.++|+++..|.+.-                 
T Consensus       401 ~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~-----------------  463 (728)
T PLN03052        401 CWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTN-----------------  463 (728)
T ss_pred             EECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcC-----------------
Confidence            999999999998767788999999999886  5678999999999999999999998875410                 


Q ss_pred             HHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC-CceEeeeccccCCCceee
Q 008787          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTV  426 (553)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~i~~~YG~tE~g~~~~~  426 (553)
                                          ....+++        ++||.+++||++++++...++.+.++ .++.+.||+||+++....
T Consensus       464 --------------------~~~~~dl--------ssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~  515 (728)
T PLN03052        464 --------------------CMAGLDW--------SSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVT  515 (728)
T ss_pred             --------------------CcccCCh--------hheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCccccc
Confidence                                0011223        38999999999999999888887765 579999999999865443


Q ss_pred             ccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCc--cccccCChhhhhhhcc-----CC--cccc
Q 008787          427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL--FSGYYKNPDLTRESII-----DG--WFHT  497 (553)
Q Consensus       427 ~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~--~~gy~~~~~~~~~~~~-----~g--~~~T  497 (553)
                      .........+++|.|.+|++++|+| +++..++.+..+.|||+++++..  ..+|+++. .....|.     .|  ||+|
T Consensus       516 ~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~t  593 (728)
T PLN03052        516 GSLLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRH  593 (728)
T ss_pred             CCCCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEec
Confidence            3222233447899999999999999 66654433222469999986532  34566553 2222231     23  8999


Q ss_pred             CceEEEccCCcEEEEecccCceecCCceeecchhHHHHHh-cCcCcceEEEEecCC
Q 008787          498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC-VAPIIEDVSISYSSV  552 (553)
Q Consensus       498 GD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~-~~p~V~~~~V~g~~~  552 (553)
                      ||+|++|+||+++++||.||+|++ +|++|+|.|||++|. .||+|.||+|+|+++
T Consensus       594 GDl~~~d~dG~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d  648 (728)
T PLN03052        594 GDIFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPP  648 (728)
T ss_pred             CceEEECCCCeEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeec
Confidence            999999999999999999999997 899999999999995 899999999999875

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-55  Score=464.51  Aligned_cols=427  Identities=22%  Similarity=0.308  Sum_probs=350.1

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      |.++.++|.++++++|+++|+++.    +     +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (497)
T PRK06145          1 MFNLSASIAFHARRTPDRAALVYR----D-----QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA   71 (497)
T ss_pred             CccHHHHHHHHHHHCCCceEEEEC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            578899999999999999999864    3     4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++..+.+++.++++.+++++++++.+...... .       ....+.++....             ..+
T Consensus        72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-~-------~~~~~~~~~~~~-------------~~~  130 (497)
T PRK06145         72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVA-L-------ETPKIVIDAAAQ-------------ADS  130 (497)
T ss_pred             HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhh-c-------ccceEEecCccc-------------chh
Confidence            9999999999999999999999999999999999876543221 0       011222222110             011


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                      ..+.... ..........++++++++|||||||.||+|++||.++...+......+     ++..+++++...|++|.++
T Consensus       131 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~  204 (497)
T PRK06145        131 RRLAQGG-LEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-----GLTASERLLVVGPLYHVGA  204 (497)
T ss_pred             HHHhccC-CCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCCCcEEEEecCchhHhH
Confidence            1111111 111112234678999999999999999999999999986655443333     6788899999999999998


Q ss_pred             HHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 008787          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (553)
Q Consensus       281 ~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (553)
                      +.. .+.+++.|+++++.+. ++..+++.++++++|++.++|+++..++.....                          
T Consensus       205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~--------------------------  258 (497)
T PRK06145        205 FDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDR--------------------------  258 (497)
T ss_pred             HHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCc--------------------------
Confidence            865 4567889999888776 999999999999999999999999888642110                          


Q ss_pred             cCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCC-CccccC
Q 008787          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD-EMCMVG  436 (553)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~-~~~~~~  436 (553)
                                 ...++        +++|.+++||+++++++.+++.+.+ +.++++.||+||++...+..... .....+
T Consensus       259 -----------~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~  319 (497)
T PRK06145        259 -----------DRFDL--------DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIG  319 (497)
T ss_pred             -----------ccccc--------ccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCC
Confidence                       00111        3799999999999999999999888 67899999999998865543322 222347


Q ss_pred             ccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEeccc
Q 008787          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  516 (553)
Q Consensus       437 ~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~  516 (553)
                      ++|.|++++++++.+ +++.  +++.++.|||+++|++++.||+++++.+.+.|.++||+|||+|++++||+++++||.+
T Consensus       320 ~~G~~~~~~~~~i~~-~~~~--~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~  396 (497)
T PRK06145        320 STGRALAHVEIRIAD-GAGR--WLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKK  396 (497)
T ss_pred             CcccCCCCceEEEEC-CCCC--CCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcCCCcEEEecccc
Confidence            899999999999999 5543  4556789999999999999999999999999999999999999999999999999999


Q ss_pred             CceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          517 NLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       517 d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |+|++ +|++++|.+||++|.+||+|.+++|+|.++
T Consensus       397 ~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~  431 (497)
T PRK06145        397 DMIIS-GGENIASSEVERVIYELPEVAEAAVIGVHD  431 (497)
T ss_pred             ceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEecCC
Confidence            99996 899999999999999999999999998764

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-56  Score=486.25  Aligned_cols=412  Identities=20%  Similarity=0.214  Sum_probs=337.9

Q ss_pred             ccHHHHHHHHHHc--CCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           42 NTAWDIFSMSVQK--YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        42 ~~l~~~l~~~a~~--~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      .|+.++|.++++.  +||++|++..          ..+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++
T Consensus         4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l   73 (705)
T PRK06060          4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL   73 (705)
T ss_pred             cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4788999988886  7999999742          269999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeee
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (553)
                      ||+++|++++|++|.++.+++.++++.++++++|++......+...         .++                     .
T Consensus        74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~---------------------~  123 (705)
T PRK06060         74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS---------RVA---------------------E  123 (705)
T ss_pred             HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------ccc---------------------h
Confidence            9999999999999999999999999999999999987654332110         000                     0


Q ss_pred             HHHHHhcc-cccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhch-hhhccccCCCCCCcEEEEecChHH
Q 008787          200 WDEFLHLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD-LFLDQFEDKMTVDDVYLSFLPLAH  277 (553)
Q Consensus       200 ~~~l~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~  277 (553)
                      ...+.... ...+....+..++++++++|||||||.||+|.++|+++...+..+. ..+     .+...+++++..|++|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~  198 (705)
T PRK06060        124 AAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-----RLTPEDTGLCSARMYF  198 (705)
T ss_pred             hhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-----CCCCcceeEEeccchh
Confidence            00111100 0011112234568899999999999999999999999987765543 223     5678899999999999


Q ss_pred             HHHHHH-HHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 008787          278 ILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (553)
Q Consensus       278 ~~g~~~-~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (553)
                      .+++.. ++.++..|+++++.+.  ++..+...++++++|+++++|+++.++++....                      
T Consensus       199 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----------------------  256 (705)
T PRK06060        199 AYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP----------------------  256 (705)
T ss_pred             hcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----------------------
Confidence            888754 5667899999998764  788899999999999999999999888642110                      


Q ss_pred             HHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCCcc
Q 008787          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMC  433 (553)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~~~  433 (553)
                                               ...+++|.+++||+++++++.+.+.+.+ +.++++.||+||++..+...... ..
T Consensus       257 -------------------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-~~  310 (705)
T PRK06060        257 -------------------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVD-EW  310 (705)
T ss_pred             -------------------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCC-CC
Confidence                                     0013899999999999999999999988 58899999999998665443322 22


Q ss_pred             ccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEe
Q 008787          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (553)
Q Consensus       434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~G  513 (553)
                      ..+++|+|++++++++++ +++  .+++.|+.|||+|+|+.++.||+++++.+..  .+|||+|||+|++++||++++.|
T Consensus       311 ~~~~iG~p~~~~~v~i~d-~~g--~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TGDl~~~~~dG~l~~~G  385 (705)
T PRK06060        311 RLGTLGRVLPPYEIRVVA-PDG--TTAGPGVEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDRVCIDSDGWVTYRC  385 (705)
T ss_pred             CcCcccccCCCcEEEEEC-CCC--CCCCCCCceEEEEccchhhhhhhCCCccccc--CCCcEECCeeEEECCCceEEEec
Confidence            347899999999999999 554  3456779999999999999999999876432  57899999999999999999999


Q ss_pred             cccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       514 R~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |.+|+|++ +|++|+|.+||++|.+||.|.+|+|+|.++
T Consensus       386 R~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~  423 (705)
T PRK06060        386 RADDTEVI-GGVNVDPREVERLIIEDEAVAEAAVVAVRE  423 (705)
T ss_pred             ccCceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeecC
Confidence            99999997 799999999999999999999999999864

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.6e-56  Score=487.36  Aligned_cols=429  Identities=21%  Similarity=0.299  Sum_probs=337.1

Q ss_pred             cccHHHHHHHHHHcCCC-CCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~-~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ..++.+.|.++++++|+ ++|+.+.   +     ++.+||+||.++++++|++|.+. +++||+|+++++|++++++++|
T Consensus       203 ~~t~~~~l~~~~~~~p~~~~a~~~~---~-----~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~l  273 (718)
T PRK08043        203 RETLYEALLSAQYRYGAGKPCIEDV---N-----FTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIF  273 (718)
T ss_pred             CCCHHHHHHHHHHHhCCCCcceEcC---C-----CCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHH
Confidence            47889999999999998 5777531   1     25799999999999999999987 5999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhc-cccccccCccEEEEecCCchHHHHHHhhCCceee
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (553)
                      ||+++|++++|+++.++.+++.+++++++++++|++.+..+.... .......... ++.+.+...            ..
T Consensus       274 A~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~------------~~  340 (718)
T PRK08043        274 GASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVR-WVYLEDLKD------------DV  340 (718)
T ss_pred             HHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhcccc-EEEhhhhhh------------hc
Confidence            999999999999999999999999999999999998775442110 0111111111 222221100            00


Q ss_pred             eHHHH--H-hcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecCh
Q 008787          199 SWDEF--L-HLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (553)
Q Consensus       199 ~~~~l--~-~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  275 (553)
                      .+...  . ..............++++++++|||||||.||+|++||.++...+......+     ++..+|++++.+|+
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~Pl  415 (718)
T PRK08043        341 TTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-----DFTPNDRFMSALPL  415 (718)
T ss_pred             chhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-----CCCccCeEEEcCcc
Confidence            11000  0 0000001111234678999999999999999999999999998877665554     67889999999999


Q ss_pred             HHHHHHHH-HHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 008787          276 AHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (553)
Q Consensus       276 ~~~~g~~~-~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (553)
                      +|.+|+.. ++.++..|+++++.+.  ++..+.+.+.++++|++.++|+++..+.+..                      
T Consensus       416 ~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~----------------------  473 (718)
T PRK08043        416 FHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA----------------------  473 (718)
T ss_pred             hhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc----------------------
Confidence            99999875 5678999999998764  6778899999999999999999987654310                      


Q ss_pred             HHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCc
Q 008787          353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM  432 (553)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~  432 (553)
                                       +..++        ++||.+++||+++++++.+.+++.+|+++++.||+||++...+...+.. 
T Consensus       474 -----------------~~~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-  527 (718)
T PRK08043        474 -----------------NPYDF--------ARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMA-  527 (718)
T ss_pred             -----------------Ccccc--------cceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcc-
Confidence                             00011        3899999999999999999999989999999999999987766543322 


Q ss_pred             cccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccC--Chhh-------hhhh-ccCCccccCceEE
Q 008787          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDL-------TRES-IIDGWFHTGDIGQ  502 (553)
Q Consensus       433 ~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~--~~~~-------~~~~-~~~g~~~TGD~g~  502 (553)
                      ...+++|+|+||+++++++ +++      .++.|||+++|++++.||++  +++.       +.+. +.+|||+|||+|+
T Consensus       528 ~~~~svG~p~pg~~~~i~d-~~~------~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~  600 (718)
T PRK08043        528 AKPGTVGRILPGMDARLLS-VPG------IEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVR  600 (718)
T ss_pred             cCCCCCCCcCCCCeeEEec-CCC------CCCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEE
Confidence            3458999999999999998 432      23569999999999999998  3442       2222 2579999999999


Q ss_pred             EccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       503 ~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|+||+++++||.+|+|++ +|++|+|.|||+++.+|+.+.+++|+|.++
T Consensus       601 ~d~dG~l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~  649 (718)
T PRK08043        601 FDEQGFVQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSD  649 (718)
T ss_pred             EcCCCcEEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccC
Confidence            9999999999999999997 799999999999999999898999998764

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.4e-55  Score=470.64  Aligned_cols=445  Identities=28%  Similarity=0.373  Sum_probs=358.2

Q ss_pred             CCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 008787           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (553)
Q Consensus        38 ~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~  117 (553)
                      +....++.+.|.+.++++|+++|+++.   ++.    +.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++
T Consensus        12 ~~~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~   84 (559)
T PRK08315         12 PLLEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLT   84 (559)
T ss_pred             ChhhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHH
Confidence            345578999999999999999999875   332    5799999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhh-----hhhccccc------------cccCccEEEEec
Q 008787          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLSPDCR------------SAQRLRVMVCFT  180 (553)
Q Consensus       118 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~~------------~~~~~~~~~~~~  180 (553)
                      +|||+++|++++|+++..+.+++..+++.++++++++++....     .+.+...+            ..+....++.++
T Consensus        85 ~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (559)
T PRK08315         85 QFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLG  164 (559)
T ss_pred             HHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeec
Confidence            9999999999999999999999999999999999999875321     11110000            001222333333


Q ss_pred             CCchHHHHHHhhCCceeeeHHHHHhccccc-----ccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhh
Q 008787          181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF  255 (553)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~  255 (553)
                      ...          ......+.++.......     .........+++++++|||||||.||+|.+||+++...+......
T Consensus       165 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~  234 (559)
T PRK08315        165 DEK----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEA  234 (559)
T ss_pred             ccC----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHh
Confidence            211          11123444444322110     111223467889999999999999999999999999888776665


Q ss_pred             hccccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHH
Q 008787          256 LDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK  332 (553)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~  332 (553)
                      +     ++..+++++...|++|.+|+.. .+.++..|+++++...  ++..+++.++++++|+++++|.++..++.....
T Consensus       235 ~-----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~  309 (559)
T PRK08315        235 M-----KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDF  309 (559)
T ss_pred             c-----CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCccc
Confidence            5     7788999999999999999876 5567888999885543  899999999999999999999999877532110


Q ss_pred             HHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCc-e
Q 008787          333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-L  411 (553)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~-i  411 (553)
                                                           +...+        +++|.+++||+++++++.+.+.+.++.. +
T Consensus       310 -------------------------------------~~~~~--------~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l  344 (559)
T PRK08315        310 -------------------------------------ARFDL--------SSLRTGIMAGSPCPIEVMKRVIDKMHMSEV  344 (559)
T ss_pred             -------------------------------------CCCCc--------hhhheeEecCCCCCHHHHHHHHHHcCCcce
Confidence                                                 00111        3899999999999999999999888764 9


Q ss_pred             EeeeccccCCCceeeccCCC--ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhh
Q 008787          412 VQGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES  489 (553)
Q Consensus       412 ~~~YG~tE~g~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~  489 (553)
                      ++.||+||++.+++......  .....++|+|+|+++++++| ++.+ .+++.|+.|||+|+|+.++.||+++++.++..
T Consensus       345 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~-~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~  422 (559)
T PRK08315        345 TIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETG-ETVPRGEQGELCTRGYSVMKGYWNDPEKTAEA  422 (559)
T ss_pred             eEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEc-CccC-CcCCCCCceEEEEECchhhhhhcCChhHHhhc
Confidence            99999999988766543322  23457899999999999999 5422 44567799999999999999999999999888


Q ss_pred             c-cCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          490 I-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       490 ~-~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      + .++||+|||+|++++||+++++||.+|+|++ +|++++|.+||++|.++|+|.+++|+++++
T Consensus       423 ~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~  485 (559)
T PRK08315        423 IDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPD  485 (559)
T ss_pred             CCCCCCEEccceEEEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCC
Confidence            8 7899999999999999999999999999996 899999999999999999999999999765

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=1.2e-55  Score=466.72  Aligned_cols=438  Identities=23%  Similarity=0.260  Sum_probs=360.1

Q ss_pred             cHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 008787           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (553)
Q Consensus        43 ~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~  122 (553)
                      ++.+.|+.+++++|+++|+.+.   +      +++||+||.+++.++|++|++.|+.+|++|+++++|+.++++++|||+
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~   71 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA   71 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            3678999999999999999864   2      479999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHHH
Q 008787          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (553)
Q Consensus       123 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (553)
                      ++|++++|+++..+.+++..+++.+++++++++......+...... .+....++.+++.....     ........|++
T Consensus        72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  145 (515)
T TIGR03098        72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPG-CHDLRTLILVGEPAHAS-----EGGGESPSWPK  145 (515)
T ss_pred             hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhc-ccccceEEEecCccccc-----CCccccccHHH
Confidence            9999999999999999999999999999999988765544333222 23344455554332100     00122345666


Q ss_pred             HHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHH
Q 008787          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  282 (553)
Q Consensus       203 l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~  282 (553)
                      +......  ....+...+++++++|||||||.||+|.+||.++...+......+     .+..+|++++.+|++|.+|+.
T Consensus       146 ~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~  218 (515)
T TIGR03098       146 LLALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-----ENRPDDRLLAVLPLSFDYGFN  218 (515)
T ss_pred             hhccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-----CCCcccEEEEECchhhHhHHH
Confidence            5543221  122334567899999999999999999999999998887766555     677889999999999999988


Q ss_pred             HHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCC
Q 008787          283 IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK  361 (553)
Q Consensus       283 ~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (553)
                      ..+.++..|+++++.+. +++.+++.++++++|++.++|+++..|.+....                             
T Consensus       219 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----------------------------  269 (515)
T TIGR03098       219 QLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP-----------------------------  269 (515)
T ss_pred             HHHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccC-----------------------------
Confidence            78888999999998876 899999999999999999999999887541000                             


Q ss_pred             cCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCCccccCccCC
Q 008787          362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (553)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~  440 (553)
                               .        ...+++|.+++||+++++++.+.+++.+ +..+++.||+||++..............+++|+
T Consensus       270 ---------~--------~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~  332 (515)
T TIGR03098       270 ---------E--------SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGK  332 (515)
T ss_pred             ---------C--------CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcce
Confidence                     0        0113899999999999999999999988 788999999999886554433333344579999


Q ss_pred             CCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhcc------------CCccccCceEEEccCCc
Q 008787          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------------DGWFHTGDIGQILPNGV  508 (553)
Q Consensus       441 ~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~------------~g~~~TGD~g~~~~dG~  508 (553)
                      |++++++++++ +++.  +++.++.|||+++|+.++.||+++++.+...+.            ++|++|||+|++++||+
T Consensus       333 ~~~~~~~~i~~-~~~~--~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  409 (515)
T TIGR03098       333 AIPNAEVLVLR-EDGS--ECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGF  409 (515)
T ss_pred             ecCCCEEEEEC-CCCC--CCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCce
Confidence            99999999999 5543  445678999999999999999999988876552            34899999999999999


Q ss_pred             EEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       509 l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +++.||.+|+|++ +|.+++|.+||++|..||.|.+|+|+|.++
T Consensus       410 l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~  452 (515)
T TIGR03098       410 LYFVGRRDEMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPD  452 (515)
T ss_pred             EEEEeccccceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccC
Confidence            9999999999997 799999999999999999999999999765

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.7e-55  Score=470.09  Aligned_cols=441  Identities=27%  Similarity=0.368  Sum_probs=355.3

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|.+.++++|+++|+++.   +..    +.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++||
T Consensus        17 ~~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a   89 (558)
T PRK12583         17 TQTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFA   89 (558)
T ss_pred             cCcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHH
Confidence            468999999999999999999874   321    5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhh-----hhhcccc------------ccccCccEEEEecCCc
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLSPDC------------RSAQRLRVMVCFTSLT  183 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~~~------------~~~~~~~~~~~~~~~~  183 (553)
                      |+++|++++++++..+.+++.++++.++++++++++....     .+.....            ...+....++.+....
T Consensus        90 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (558)
T PRK12583         90 TARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP  169 (558)
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCC
Confidence            9999999999999999999999999999999998764321     1111000            0112222333332211


Q ss_pred             hHHHHHHhhCCceeeeHHHHHhccccc-----ccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhcc
Q 008787          184 AEQKEMAVQTGIKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ  258 (553)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~  258 (553)
                      .          .....|+++.......     ........++++++++|||||||.||+|.+||+++...+......+  
T Consensus       170 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~--  237 (558)
T PRK12583        170 P----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL--  237 (558)
T ss_pred             C----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh--
Confidence            1          1123344443322110     1112234678899999999999999999999999988887766555  


Q ss_pred             ccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHH
Q 008787          259 FEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE  335 (553)
Q Consensus       259 ~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~  335 (553)
                         ++..+|++++..|++|.+|... .+.++..|+++++...  ++..+++.++++++|++.++|+++..+++....   
T Consensus       238 ---~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~---  311 (558)
T PRK12583        238 ---GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQR---  311 (558)
T ss_pred             ---CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccc---
Confidence               6788899999999999999876 5567888998887653  899999999999999999999998776532110   


Q ss_pred             hhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceEee
Q 008787          336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQG  414 (553)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~i~~~  414 (553)
                                                        ...++        +++|.+++||+++++++.+++.+.++. .+++.
T Consensus       312 ----------------------------------~~~~~--------~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~  349 (558)
T PRK12583        312 ----------------------------------GNFDL--------SSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIA  349 (558)
T ss_pred             ----------------------------------cCCCc--------hhheEEEecCCCCCHHHHHHHHHHcCCcceecc
Confidence                                              00111        389999999999999999999888864 69999


Q ss_pred             eccccCCCceeeccCCC--ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-c
Q 008787          415 YGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I  491 (553)
Q Consensus       415 YG~tE~g~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~  491 (553)
                      ||+||++.+++......  .....++|.|.+++.+++++ +++  .+++.|+.|||+++|+.++.||+++++.+.+.+ .
T Consensus       350 YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~  426 (558)
T PRK12583        350 YGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDG--ATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDE  426 (558)
T ss_pred             ccccccccceeccCcccccccccCCCCccCCCCeEEEEC-CCC--CCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCC
Confidence            99999998776654322  23447899999999999999 553  456677899999999999999999999998887 8


Q ss_pred             CCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       492 ~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ++||+|||+|++++||++++.||.+|+|++ +|++++|.+||++|..||+|.+|+|+|.++
T Consensus       427 ~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~  486 (558)
T PRK12583        427 DGWMHTGDLATMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPD  486 (558)
T ss_pred             CCCeeccceEEECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeec
Confidence            899999999999999999999999999996 899999999999999999999999999754

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=1.7e-55  Score=464.27  Aligned_cols=431  Identities=24%  Similarity=0.340  Sum_probs=353.8

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      .+++.+.|..++ .+|+++|+...   ++     +.+||.||.+++.++|.+|++.|+++||+|+++++|+++++++++|
T Consensus         2 ~~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la   72 (504)
T PRK07514          2 NNNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLA   72 (504)
T ss_pred             CccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            368899999999 99999999764   33     5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++..+.+++..+++.+++++++++......+......  .....++.++....             ..+
T Consensus        73 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~~  137 (504)
T PRK07514         73 TLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAA--AGAPHVETLDADGT-------------GSL  137 (504)
T ss_pred             HHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhc--cCCceEEEecCCCc-------------ccH
Confidence            999999999999999999999999999999999998766554332211  12222333332211             112


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                      .+..... ...........+++++++|||||||.||+|.+||.++...+......+     ++..++++++.+|++|..|
T Consensus       138 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  211 (504)
T PRK07514        138 LEAAAAA-PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-----RFTPDDVLIHALPIFHTHG  211 (504)
T ss_pred             HHhhhhc-CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCccEEEEecchHHHHH
Confidence            2222111 111223345678999999999999999999999999998877665554     6778899999999999999


Q ss_pred             HHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 008787          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (553)
Q Consensus       281 ~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (553)
                      +.. ...++..|+++++.+. ++..+++.+  .++|++.++|.++.++++...                           
T Consensus       212 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~---------------------------  262 (504)
T PRK07514        212 LFVATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPR---------------------------  262 (504)
T ss_pred             HHHHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCC---------------------------
Confidence            875 5567899999998876 899999998  479999999999988764210                           


Q ss_pred             cCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCcc
Q 008787          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  438 (553)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~  438 (553)
                                .+...        .+++|.+++||+++++++.+.+++.++.++++.||+||++........ ......++
T Consensus       263 ----------~~~~~--------~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~  323 (504)
T PRK07514        263 ----------LTREA--------AAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYD-GERRAGTV  323 (504)
T ss_pred             ----------CCccc--------ccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCcc-ccccCccc
Confidence                      00011        138999999999999999999999999999999999998865543322 22334789


Q ss_pred             CCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEEEecccC
Q 008787          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKN  517 (553)
Q Consensus       439 G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~GR~~d  517 (553)
                      |.|++++++++++ ++++ .+++.|+.|||+++|+.++.||+++++.+++.| .+|||+|||+|+++++|++++.||.+|
T Consensus       324 G~~~~~~~v~i~d-~~~~-~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~  401 (504)
T PRK07514        324 GFPLPGVSLRVTD-PETG-AELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKD  401 (504)
T ss_pred             ccCCCCcEEEEEE-CCCC-CCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccc
Confidence            9999999999999 4443 556678999999999999999999999999888 589999999999999999999999999


Q ss_pred             ceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          518 LIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       518 ~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|++ +|++++|.+||+++.++++|.+++|+|.++
T Consensus       402 ~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~  435 (504)
T PRK07514        402 LIIS-GGYNVYPKEVEGEIDELPGVVESAVIGVPH  435 (504)
T ss_pred             eEEe-CCeEECHHHHHHHHHhCCCeeEEEEEeCCC
Confidence            9996 899999999999999999999999999765

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4.6e-56  Score=477.72  Aligned_cols=435  Identities=19%  Similarity=0.239  Sum_probs=335.3

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCC---CCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~---~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~  117 (553)
                      ..++.++++++++++|+++|+++.   +.   .++.++.+||+||.++++++|++|.+. +++||+|+++++|+++++++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~  108 (612)
T PRK12476         33 GTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAG  108 (612)
T ss_pred             cCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHH
Confidence            468999999999999999999875   31   124456899999999999999999986 99999999999999999999


Q ss_pred             HHHHHhcCCEEeeC-CCCCC--hhHHHHHHhhcCceEEEEcchhhhhhhccccccc-cCccEEEEecCCchHHHHHHhhC
Q 008787          118 MEACNALSLICVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQT  193 (553)
Q Consensus       118 ~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  193 (553)
                      +|||+++|++++|+ ++..+  ++++.++++.++++++|++......+........ .....++.++....         
T Consensus       109 ~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------  179 (612)
T PRK12476        109 FFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD---------  179 (612)
T ss_pred             HHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc---------
Confidence            99999999999999 56665  7899999999999999998776554322211100 01123333322110         


Q ss_pred             CceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCC-CCCCcEEEEe
Q 008787          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYLSF  272 (553)
Q Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~  272 (553)
                                  .. ..........++++++|+|||||||.||||.+||+++...+......+     . +..++++++.
T Consensus       180 ------------~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l~~  241 (612)
T PRK12476        180 ------------SA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-----DLLDRNTHGVSW  241 (612)
T ss_pred             ------------cc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-----ccCCCCceEEEe
Confidence                        00 001111234678999999999999999999999999987766544444     4 5678999999


Q ss_pred             cChHHHHHHHHHHHHHHcCcEEEEecC-----ChHHHHHHhh--hhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHH
Q 008787          273 LPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (553)
Q Consensus       273 ~p~~~~~g~~~~~~~l~~g~~~~~~~~-----~~~~~~~~i~--~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~  345 (553)
                      +|++|.+|+...+.+++.|+++++...     ++..+++.++  +++++.+..+|+++..++.......           
T Consensus       242 ~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~-----------  310 (612)
T PRK12476        242 LPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPA-----------  310 (612)
T ss_pred             CCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChh-----------
Confidence            999999998776666556666555432     7889999995  5899999999999887754210000           


Q ss_pred             HHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc---CC---ceEeeecccc
Q 008787          346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGLTE  419 (553)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~---~~---~i~~~YG~tE  419 (553)
                                            ....+++        +++| +++||+++++++.+.+.+.|   |+   .+++.||+||
T Consensus       311 ----------------------~~~~~~l--------~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE  359 (612)
T PRK12476        311 ----------------------EGDDIDL--------SNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAE  359 (612)
T ss_pred             ----------------------hhcCcch--------hHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhh
Confidence                                  0001112        3789 99999999999999999887   44   4899999999


Q ss_pred             CCCceeeccCCC--------------------------ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecC
Q 008787          420 TCGPTTVCFPDE--------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK  473 (553)
Q Consensus       420 ~g~~~~~~~~~~--------------------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~  473 (553)
                      ++...+......                          ....+++|+|+|+.+++|+| ++.+ .+++.|+.|||+++|+
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd-~~~g-~~~~~g~~GEl~v~g~  437 (612)
T PRK12476        360 ATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVD-PDTG-AELPDGEVGEIWLHGD  437 (612)
T ss_pred             hheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEe-CCCC-cCCCCCCEEEEEEcCC
Confidence            876544322111                          00125789999999999999 5522 3455679999999999


Q ss_pred             CccccccCChhhhhhhcc-------------------CCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHH
Q 008787          474 TLFSGYYKNPDLTRESII-------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN  534 (553)
Q Consensus       474 ~~~~gy~~~~~~~~~~~~-------------------~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~  534 (553)
                      +++.||+++|+.+++.|.                   ++||+|||+|+++ ||+|+|+||.+|+|++ +|++|+|.|||+
T Consensus       438 ~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~-~G~~I~p~eIE~  515 (612)
T PRK12476        438 NIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVI-DGRNHYPQDIEA  515 (612)
T ss_pred             cccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEE-CCcccCHHHHHH
Confidence            999999999999988873                   2499999999985 9999999999999997 899999999999


Q ss_pred             HHhc-CcCcce--EEEEecCC
Q 008787          535 VYCV-APIIED--VSISYSSV  552 (553)
Q Consensus       535 ~l~~-~p~V~~--~~V~g~~~  552 (553)
                      +|.+ ||.|.+  ++|+|.++
T Consensus       516 ~l~~~~p~V~~~~v~v~~~~~  536 (612)
T PRK12476        516 TVAEASPMVRRGYVTAFTVPA  536 (612)
T ss_pred             HHHHhcccccCCcEEEEEecC
Confidence            9984 899999  77788764

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=2e-56  Score=472.23  Aligned_cols=419  Identities=19%  Similarity=0.238  Sum_probs=323.4

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~  121 (553)
                      +-+.+.|+.+++++|+++|+++.     .++.++++||+||.++++++|..|.++  ++||+|+++++|++++++++|||
T Consensus         2 ~~~~~~l~~~~~~~~~~~a~~~~-----~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~   74 (525)
T PRK05851          2 NELAAALSDAMTASGRDLVVLDR-----ESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGA   74 (525)
T ss_pred             chHHHHHHHHhcCCCCceEEeCC-----CCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHH
Confidence            44889999999999999999864     334578999999999999999999988  89999999999999999999999


Q ss_pred             HhcCCEEeeCCCC-------CChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCC
Q 008787          122 NALSLICVPLYDT-------LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (553)
Q Consensus       122 ~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (553)
                      +++|+++++++..       ...+++.++++.+++++++++......+....    ..    +.+.+             
T Consensus        75 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~----~~~~~-------------  133 (525)
T PRK05851         75 WLAGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVD----SS----VTVHD-------------  133 (525)
T ss_pred             HHcCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhh----cc----ccccc-------------
Confidence            9999986543311       12345566789999999999877654432211    00    00000             


Q ss_pred             ceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCC-CCcEEEEec
Q 008787          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT-VDDVYLSFL  273 (553)
Q Consensus       195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  273 (553)
                           +......  ....+.....++++++|+|||||||.||+|++||.++...+......+     ++. .+|++++++
T Consensus       134 -----~~~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~d~~l~~~  201 (525)
T PRK05851        134 -----LATAAHT--NRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-----GLDAATDVGCSWL  201 (525)
T ss_pred             -----ccccccc--cccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCCCCeEEEcC
Confidence                 0000000  000111224678999999999999999999999999998888766655     666 889999999


Q ss_pred             ChHHHHHHHHHHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 008787          274 PLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (553)
Q Consensus       274 p~~~~~g~~~~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (553)
                      |++|.+|+...+.+++.|+++++.+.     ++..+++.+.++++|++.. |.++..++......               
T Consensus       202 pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~-p~~~~~~l~~~~~~---------------  265 (525)
T PRK05851        202 PLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAA-PNFAYNLIGKYARR---------------  265 (525)
T ss_pred             CCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeC-CcHHHHHHHHhhcc---------------
Confidence            99999999877788999999998762     5788999999999998755 44444333211000               


Q ss_pred             HHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHh---cCC---ceEeeeccccCCC
Q 008787          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTETCG  422 (553)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~---~~~---~i~~~YG~tE~g~  422 (553)
                                          ....++        +++|.+++||+++++++.++|.+.   +|.   .+++.||+||++.
T Consensus       266 --------------------~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~  317 (525)
T PRK05851        266 --------------------VSDVDL--------GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTC  317 (525)
T ss_pred             --------------------ccCCCH--------HHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhce
Confidence                                000111        379999999999999999988764   454   4999999999986


Q ss_pred             ceeeccCC--------------CccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhh
Q 008787          423 PTTVCFPD--------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE  488 (553)
Q Consensus       423 ~~~~~~~~--------------~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~  488 (553)
                      .+......              ......++|+|+||++++|+| +++. .+++.|+.|||+++|++++.||+++++.+  
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~GEl~v~g~~~~~GY~~~~~~~--  393 (525)
T PRK05851        318 AVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDGA-AGVAGREIGEIEIRGASMMSGYLGQAPID--  393 (525)
T ss_pred             EEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCCC-ccCCCCCeEEEEEecCchhhccccCCccC--
Confidence            65543221              012236799999999999998 5443 34566789999999999999999998643  


Q ss_pred             hccCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          489 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       489 ~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                        .+|||+|||+|+++ +|+|+++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|++.++
T Consensus       394 --~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~  453 (525)
T PRK05851        394 --PDDWFPTGDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGT  453 (525)
T ss_pred             --CCCceeccceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEe
Confidence              47899999999997 8999999999999997 899999999999999999999999998764

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3e-55  Score=464.28  Aligned_cols=434  Identities=22%  Similarity=0.249  Sum_probs=354.8

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..|+.++|.++++++|+++|+++.    +     +.+||.||.+++.++|..|.+.|+++|++|+++++|+++++++++|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la   81 (524)
T PRK06188         11 GATYGHLLVSALKRYPDRPALVLG----D-----TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGA   81 (524)
T ss_pred             CccHHHHHHHHHHHCCCCeEEEEC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            468999999999999999999864    2     4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcch-hhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeee
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK-KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (553)
                      |+++|++++++++..+.+++.++++.++++.+++++. ....... ..........++.+......            ..
T Consensus        82 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------~~  148 (524)
T PRK06188         82 AQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALA-LLARVPSLKHVLTLGPVPDG------------VD  148 (524)
T ss_pred             HHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHH-HhhhcCCceEEEEeCCccch------------hh
Confidence            9999999999999999999999999999999999876 3222211 11122333445544432110            00


Q ss_pred             HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHH
Q 008787          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (553)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  279 (553)
                      ..+..... ..........++++++++|||||||.||+|.+||.++...+......+     .+..++++++.+|++|.+
T Consensus       149 ~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~pl~~~~  222 (524)
T PRK06188        149 LLAAAAKF-GPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-----EWPADPRFLMCTPLSHAG  222 (524)
T ss_pred             HHHhhhcc-CcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCcEEEEecCchhhh
Confidence            11111111 001111122455699999999999999999999999998888766655     677889999999999988


Q ss_pred             HHHHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 008787          280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (553)
Q Consensus       280 g~~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (553)
                      ++. .+.+++.|+++++.+. ++..+++.++++++|++.++|+++..+++.....                         
T Consensus       223 g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~-------------------------  276 (524)
T PRK06188        223 GAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLR-------------------------  276 (524)
T ss_pred             hHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc-------------------------
Confidence            874 4567889999999887 8999999999999999999999999886521100                         


Q ss_pred             cCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC-----cc
Q 008787          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----MC  433 (553)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-----~~  433 (553)
                                  ..+        ++++|.+++||++++++....+.+.++..+++.||+||++..++......     ..
T Consensus       277 ------------~~~--------l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  336 (524)
T PRK06188        277 ------------TRD--------LSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPK  336 (524)
T ss_pred             ------------CCC--------CcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccccc
Confidence                        001        14899999999999999888888888999999999999976665543321     23


Q ss_pred             ccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEe
Q 008787          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (553)
Q Consensus       434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~G  513 (553)
                      ...++|+|+|++++++++ +++  .+++.|+.|||+++|+.++.||++++..+...+.+|||+|||+|++++||++++.|
T Consensus       337 ~~~~~G~p~~g~~v~i~~-~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~G  413 (524)
T PRK06188        337 RLTSCGRPTPGLRVALLD-EDG--REVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYIVD  413 (524)
T ss_pred             cCCccccccCCcEEEEEc-CCC--CCCCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcCCccEEEEe
Confidence            446899999999999998 554  34567789999999999999999999999988999999999999999999999999


Q ss_pred             cccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       514 R~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |.+|+|++ +|++++|.+||++|.+||+|.+++|+|.++
T Consensus       414 R~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~  451 (524)
T PRK06188        414 RKKDMIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPD  451 (524)
T ss_pred             ccccceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccC
Confidence            99999996 899999999999999999999999999764

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7e-55  Score=464.57  Aligned_cols=454  Identities=23%  Similarity=0.305  Sum_probs=354.9

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      ....++.++|..+++++|+++|+++.   +      ..+||.||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus        20 ~~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~   90 (557)
T PRK07059         20 SQYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAI   90 (557)
T ss_pred             CCCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence            34578999999999999999999864   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchH-HHH---------
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAE-QKE---------  188 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------  188 (553)
                      |||+++|++++|+++..+.+++.++++.++++++++++.....+......  .....++........ ...         
T Consensus        91 la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (557)
T PRK07059         91 AAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK--TAVKHVVVASMGDLLGFKGHIVNFVVRR  168 (557)
T ss_pred             HHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc--cCCceeEEeccccccccccccccccccc
Confidence            99999999999999999999999999999999999987665443322211  112222222110000 000         


Q ss_pred             HH----hhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccc-cCC-
Q 008787          189 MA----VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF-EDK-  262 (553)
Q Consensus       189 ~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~-~~~-  262 (553)
                      ..    .........+.+++..............++++++++|||||||.||+|.++|.+++..+......+... ... 
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~  248 (557)
T PRK07059        169 VKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKP  248 (557)
T ss_pred             ccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccC
Confidence            00    000112234555544332222233445788999999999999999999999999987654433222110 001 


Q ss_pred             CCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhch
Q 008787          263 MTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP  339 (553)
Q Consensus       263 ~~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~  339 (553)
                      ......+++.+|++|.+++.. .+.++..|++.++.+.  ++..+++.++++++|.+.++|.++..+.+...        
T Consensus       249 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~--------  320 (557)
T PRK07059        249 RPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD--------  320 (557)
T ss_pred             CCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC--------
Confidence            112457788999999998764 5567788888776654  88999999999999999999999998764210        


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeecccc
Q 008787          340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE  419 (553)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE  419 (553)
                                                   ....++        +++|.++.||+++++.+.+.|.+.+++++++.||+||
T Consensus       321 -----------------------------~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE  363 (557)
T PRK07059        321 -----------------------------FDKLDF--------SKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSE  363 (557)
T ss_pred             -----------------------------cCcCCc--------hhheEEEeccccCCHHHHHHHHHHhCCCeeecccccc
Confidence                                         011112        3789999999999999999999989999999999999


Q ss_pred             CCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccC
Q 008787          420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (553)
Q Consensus       420 ~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TG  498 (553)
                      ++.+++.+.......+.++|.|++++++++++ +++  .+++.|+.|||+++|+.++.||+++++.+.+.+ .+|||+||
T Consensus       364 ~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TG  440 (557)
T PRK07059        364 TSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDG--NDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTG  440 (557)
T ss_pred             ccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCC--CCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecC
Confidence            98876655443334457899999999999998 554  455677899999999999999999999998877 68999999


Q ss_pred             ceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       499 D~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |+|++++||++++.||.+|+|++ +|++++|.+||++|.+||+|.+++|+|+++
T Consensus       441 Dl~~~~~~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~  493 (557)
T PRK07059        441 DVGVMDERGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPD  493 (557)
T ss_pred             cEEEEcCCCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEeccc
Confidence            99999999999999999999997 799999999999999999999999998754

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.5e-55  Score=508.63  Aligned_cols=444  Identities=23%  Similarity=0.286  Sum_probs=357.2

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      ....++.+.+.++++++|+++|+++.   ++     +++||+||.++++++|+.|++ ++++||+|+++++|++++++++
T Consensus       612 ~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~  682 (1146)
T PRK08633        612 EALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALAN  682 (1146)
T ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHH
Confidence            34578999999999999999999853   23     479999999999999999987 4899999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccc-cccCccEEEEecCCchHHHHHHhhCCcee
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-SAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (553)
                      +||+++|++++|+++..+.+++.+++++++++++++++.....+.+.... ..+....++..++......        ..
T Consensus       683 la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  754 (1146)
T PRK08633        683 LALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKIS--------KV  754 (1146)
T ss_pred             HHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccc--------hh
Confidence            99999999999999999999999999999999999998766655321100 1112223333332211000        00


Q ss_pred             eeHHHHHhccccc-----ccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEe
Q 008787          198 YSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (553)
Q Consensus       198 ~~~~~l~~~~~~~-----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (553)
                      ..+..........     ........++++++++|||||||.||+|.+||+++...+......+     +...+|++++.
T Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~  829 (1146)
T PRK08633        755 DKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILSS  829 (1146)
T ss_pred             HHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-----CCCCCCEEEEc
Confidence            0111111110000     0001345678999999999999999999999999998887766655     67788999999


Q ss_pred             cChHHHHHHHH-HHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 008787          273 LPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY  349 (553)
Q Consensus       273 ~p~~~~~g~~~-~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (553)
                      +|++|.+|+.. .+.++..|+++++.+.  +++.+++.++++++|++.++|++++.+.+...                  
T Consensus       830 ~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------  891 (1146)
T PRK08633        830 LPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKK------------------  891 (1146)
T ss_pred             CcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccc------------------
Confidence            99999999876 6678899999888764  89999999999999999999999988764211                  


Q ss_pred             HHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccC
Q 008787          350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP  429 (553)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~  429 (553)
                                         .+..        ..+++|.+++||+++++++.+.+++.+|.++++.||+||++++++....
T Consensus       892 -------------------~~~~--------~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~  944 (1146)
T PRK08633        892 -------------------LHPL--------MFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLP  944 (1146)
T ss_pred             -------------------cCcc--------cCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecC
Confidence                               0001        1148999999999999999999999999999999999999887765432


Q ss_pred             CC---------ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccC----Cccc
Q 008787          430 DE---------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFH  496 (553)
Q Consensus       430 ~~---------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~----g~~~  496 (553)
                      +.         ....+++|+|+||++++++| ++++ .+++.|+.|||+++|++++.||+++|+.+++.+.+    |||+
T Consensus       945 ~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~ 1022 (1146)
T PRK08633        945 DVLAADFKRQTGSKEGSVGMPLPGVAVRIVD-PETF-EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYV 1022 (1146)
T ss_pred             cccccccccccCCCCCCccccCCCCEEEEEc-CCCC-ccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEE
Confidence            21         12357899999999999999 4433 45567899999999999999999999999988866    8999


Q ss_pred             cCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCc--CcceEEEEecCC
Q 008787          497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP--IIEDVSISYSSV  552 (553)
Q Consensus       497 TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p--~V~~~~V~g~~~  552 (553)
                      |||+|++|+||++++.||.+|+|++ +|++++|.|||++|.+||  .+.+|+|+|.++
T Consensus      1023 TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~ 1079 (1146)
T PRK08633       1023 TGDKGHLDEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPD 1079 (1146)
T ss_pred             CCCEEEEcCCceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccC
Confidence            9999999999999999999999996 899999999999999999  567899999875

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=7.2e-56  Score=517.93  Aligned_cols=445  Identities=19%  Similarity=0.143  Sum_probs=348.6

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCC---CCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGK---FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~---~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      .++.++|.++++++|+++|+++.   ...   ....+++||+||.++++++|++|.+.|+++|++|+++++|++++++++
T Consensus       236 ~~l~~~~~~~a~~~pd~~A~~~~---~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~  312 (1389)
T TIGR03443       236 GAIHDIFADNAEKHPDRTCVVET---PSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAV  312 (1389)
T ss_pred             CcHHHHHHHHHHhCCCCeEEEec---cccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHH
Confidence            57999999999999999999864   211   123468999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhh---hhhhccccccc---cCccEEEEecCCchHHHHHHhh
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---KELLSPDCRSA---QRLRVMVCFTSLTAEQKEMAVQ  192 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  192 (553)
                      +||+++|++++|++|..+.+++.++++.++++++++.....   ..+........   .....+. +.+.....      
T Consensus       313 lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------  385 (1389)
T TIGR03443       313 MGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALA-LQDDGSLV------  385 (1389)
T ss_pred             HHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEE-eccccccc------
Confidence            99999999999999999999999999999999999875421   11101000000   0111111 11100000      


Q ss_pred             CCceeeeHHHHHhccc--ccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEE
Q 008787          193 TGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  270 (553)
Q Consensus       193 ~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~  270 (553)
                      .........+++....  ..........++++++++|||||||.||||+++|+++.+.+......+     ++..+|+++
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~  460 (1389)
T TIGR03443       386 GGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-----GLSENDKFT  460 (1389)
T ss_pred             ccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence            0000000000000000  000111234678999999999999999999999999999887766665     678899999


Q ss_pred             EecChHHHHHHHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 008787          271 SFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (553)
Q Consensus       271 ~~~p~~~~~g~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (553)
                      ...|++|..++...+.+++.|+++++.+.    ++..+++.++++++|++.++|++++.|.....               
T Consensus       461 ~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~---------------  525 (1389)
T TIGR03443       461 MLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT---------------  525 (1389)
T ss_pred             EecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc---------------
Confidence            99999998888778889999999998764    68899999999999999999999987743100               


Q ss_pred             HHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCcee
Q 008787          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTT  425 (553)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~  425 (553)
                                                       ...+++|.+++||+++++...+.+.... ++++++.||+||++..++
T Consensus       526 ---------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~  572 (1389)
T TIGR03443       526 ---------------------------------TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVS  572 (1389)
T ss_pred             ---------------------------------ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEE
Confidence                                             0014899999999999999999888765 788999999999987665


Q ss_pred             eccCCC----------ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhcc----
Q 008787          426 VCFPDE----------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----  491 (553)
Q Consensus       426 ~~~~~~----------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~----  491 (553)
                      ......          .....++|+|+++++++|+| +++...+++.|+.|||+|+||+++.||+++|+.|.+.|.    
T Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~  651 (1389)
T TIGR03443       573 YFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVN-RNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWF  651 (1389)
T ss_pred             EEEccccccccchhhcccCcCcCCCccCCCEEEEEC-CccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcc
Confidence            432111          01235789999999999999 655556777889999999999999999999999998872    


Q ss_pred             -------------------------CCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEE
Q 008787          492 -------------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVS  546 (553)
Q Consensus       492 -------------------------~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~  546 (553)
                                               ++||+|||+|++++||+|+|+||.||+||+ +|++|+|.|||++|.+||.|.+|+
T Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~a~  730 (1389)
T TIGR03443       652 VDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVRENV  730 (1389)
T ss_pred             cCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchheeE
Confidence                                     479999999999999999999999999997 899999999999999999999999


Q ss_pred             EEecC
Q 008787          547 ISYSS  551 (553)
Q Consensus       547 V~g~~  551 (553)
                      |++.+
T Consensus       731 v~~~~  735 (1389)
T TIGR03443       731 TLVRR  735 (1389)
T ss_pred             EEEee
Confidence            98754

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=1e-54  Score=461.71  Aligned_cols=454  Identities=23%  Similarity=0.295  Sum_probs=353.1

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      ..+.++.++|.++++++|+++|+.+.    +     +.+||.||.++++++|.+|.+.|+++||+|+++++|+.++++++
T Consensus        18 ~~~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~   88 (541)
T TIGR03205        18 IARGTLPDLLSKAAADYGPRPALEFR----D-----RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINF   88 (541)
T ss_pred             CCCCCHHHHHHHHHHHcCCCceEEEC----C-----cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            34568999999999999999999763    2     47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchh--hhhhhccccccccCccEEEEecCCchHHHHH---HhhC
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK--VKELLSPDCRSAQRLRVMVCFTSLTAEQKEM---AVQT  193 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  193 (553)
                      +||+++|++++|+++..+.+++.++++.++++++++++..  .....+....  .....++............   ....
T Consensus        89 la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (541)
T TIGR03205        89 FGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK--GLLDRLIVCEDDNWGKVGTPQAPIPA  166 (541)
T ss_pred             HHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc--ccceEEEEecccccccccccccccCC
Confidence            9999999999999999999999999999999999987632  1111111110  1122333332211000000   0001


Q ss_pred             CceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhcc-ccCCCCCCcEEEEe
Q 008787          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ-FEDKMTVDDVYLSF  272 (553)
Q Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~  272 (553)
                      .....++++++..... ........++++++++|||||||.||+|.++|.++....... ..+.. ........+++++.
T Consensus       167 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~  244 (541)
T TIGR03205       167 DPRIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICV  244 (541)
T ss_pred             CcccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEe
Confidence            1223456666543211 122234567899999999999999999999999987654321 11100 00122345789999


Q ss_pred             cChHHHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 008787          273 LPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (553)
Q Consensus       273 ~p~~~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (553)
                      .|++|.+++.. ++.++..|+++++... +++.+++.|+++++|++.++|.++..|++...                   
T Consensus       245 ~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------  305 (541)
T TIGR03205       245 LPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS-------------------  305 (541)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc-------------------
Confidence            99999998875 5567889999887765 89999999999999999999999988753100                   


Q ss_pred             HHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCC
Q 008787          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (553)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~  430 (553)
                                        ....++        +++|.+++||+++++++.+++.+.++.++++.||+||++..++.....
T Consensus       306 ------------------~~~~~~--------~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~  359 (541)
T TIGR03205       306 ------------------LEKRDL--------SSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPE  359 (541)
T ss_pred             ------------------ccccCc--------cccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCC
Confidence                              000011        379999999999999999999988899999999999998877655443


Q ss_pred             CccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEE
Q 008787          431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK  510 (553)
Q Consensus       431 ~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~  510 (553)
                      .....+++|++++++.+++++.++++ .+++.|+.|||+++|++++.||+++++.+.+.|.++||+|||+|++++||+++
T Consensus       360 ~~~~~~~~G~~~~~~~~~v~~~d~~~-~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~  438 (541)
T TIGR03205       360 GPDKPGSIGLMLPGIELDVVSLDDPT-KVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFF  438 (541)
T ss_pred             CCCCCCCcceeccCceeEEEecCCCC-ccCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEcCCceEE
Confidence            33334789999999999987633332 45567789999999999999999999999998989999999999999999999


Q ss_pred             EEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       511 ~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +.||.+|+|++ +|++++|.+||+++.+||.|.+++|+|.++
T Consensus       439 i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~  479 (541)
T TIGR03205       439 LVDRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPD  479 (541)
T ss_pred             EEccccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCC
Confidence            99999999996 899999999999999999999999998764

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.1e-55  Score=464.25  Aligned_cols=442  Identities=19%  Similarity=0.213  Sum_probs=348.4

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ...++.++|.++++++|+++|++..    .     +++||.||.+++.++|..|.+.|+++||+|+++++|+.+++++++
T Consensus         8 ~~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~l   78 (540)
T PRK06164          8 RADTLASLLDAHARARPDAVALIDE----D-----RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFL   78 (540)
T ss_pred             CCCCHHHHHHHHHHhCCCCeEEecC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHH
Confidence            3468999999999999999999843    2     479999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhh-----hhhhccccccccCccEEEEecCCchHHHHHHhhCC
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (553)
                      ||+++|++++|+++..+.+++.++++.+++++++++....     ..+.............++.++.......      .
T Consensus        79 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  152 (540)
T PRK06164         79 ACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATP------A  152 (540)
T ss_pred             HHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCC------C
Confidence            9999999999999999999999999999999999977642     1111111111223334444431110000      0


Q ss_pred             ceeeeHHHHHhccccccc---ccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEE
Q 008787          195 IKPYSWDEFLHLGKVNEM---EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (553)
Q Consensus       195 ~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (553)
                      .....+.++.........   .......+++++++|||||||.||+|.+||+++...+..+...+     ++..++++++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~  227 (540)
T PRK06164        153 PAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-----GYDPGAVLLA  227 (540)
T ss_pred             CCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence            000011111110000000   01223568899999999999999999999999998888776666     6778999999


Q ss_pred             ecChHHHHHHHHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 008787          272 FLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (553)
Q Consensus       272 ~~p~~~~~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (553)
                      .+|++|.+|+...+.++..|+++++.+. ++..+++.++++++|+++++|.++..|.+... .                 
T Consensus       228 ~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~-~-----------------  289 (540)
T PRK06164        228 ALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG-E-----------------  289 (540)
T ss_pred             cCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc-c-----------------
Confidence            9999999999877888999999988776 89999999999999999999999998865300 0                 


Q ss_pred             HHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcC-CCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccC
Q 008787          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG-APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP  429 (553)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG-~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~  429 (553)
                                          .        ...+++|.+.++| .+...++.+++... ++++++.||+||++.+.+....
T Consensus       290 --------------------~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~  340 (540)
T PRK06164        290 --------------------R--------ADFPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPA  340 (540)
T ss_pred             --------------------c--------CCCcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCC
Confidence                                0        0113788877665 55666777777765 8999999999999876655443


Q ss_pred             CC--ccccCccCCCC-CCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEcc
Q 008787          430 DE--MCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP  505 (553)
Q Consensus       430 ~~--~~~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~  505 (553)
                      ..  .....+.|.++ ++++++++| ++++ .+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+
T Consensus       341 ~~~~~~~~~~~g~~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~  418 (540)
T PRK06164        341 TDPVSVRIEGGGRPASPEARVRARD-PQDG-ALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRG  418 (540)
T ss_pred             CCCCcceeccCccccCCCeEEEEec-CCCC-cCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcC
Confidence            22  22224567765 899999998 4433 456678999999999999999999999999988 689999999999999


Q ss_pred             CCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecC
Q 008787          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSS  551 (553)
Q Consensus       506 dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~  551 (553)
                      ||++++.||.+|+|++ +|++++|.+||+.|..||+|.+++|+|.+
T Consensus       419 ~g~l~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~  463 (540)
T PRK06164        419 DGQFVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGAT  463 (540)
T ss_pred             CceEEEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecC
Confidence            9999999999999997 79999999999999999999999999965

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=4.9e-55  Score=463.14  Aligned_cols=435  Identities=20%  Similarity=0.222  Sum_probs=350.1

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      +.++.++|.++++  |+++|+++.    +     +.+||.||.+++.++|..|.+.|+++|++|+++++|+++++++++|
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la   92 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVICG----E-----RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA   92 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence            5689999998887  999999853    2     4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhh----hhhhccccccccCccEEEEecCCchHHHHHHhhCCce
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (553)
                      |+++|++++++.+.....++..+++.+++++++++....    ...........+....++.....             .
T Consensus        93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~  159 (536)
T PRK10946         93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDD-------------G  159 (536)
T ss_pred             HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCC-------------C
Confidence            999999888777777778899999999999999886431    11111112222333333333221             1


Q ss_pred             eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChH
Q 008787          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (553)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  276 (553)
                      ...+.+++..... ..+.....++++++++|||||||.||+|++||.++...+......+     .+..++++++.+|++
T Consensus       160 ~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~  233 (536)
T PRK10946        160 EHSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----GFTPQTRYLCALPAA  233 (536)
T ss_pred             CccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCceEEEecCcc
Confidence            1234444433211 1222345678999999999999999999999999999888765555     678889999999999


Q ss_pred             HHHHHHH--HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 008787          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (553)
Q Consensus       277 ~~~g~~~--~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      |.+++..  .+.++..|+++++.+. ++..+++.++++++|++.++|..+..+++.+......                 
T Consensus       234 h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~-----------------  296 (536)
T PRK10946        234 HNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSR-----------------  296 (536)
T ss_pred             ccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCcc-----------------
Confidence            9988764  5567899999988765 8999999999999999999999999887543111000                 


Q ss_pred             HHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCcc
Q 008787          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (553)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~  433 (553)
                                                ...+++|.+++||+++++++.+.+.+.+|+++++.||+||++............
T Consensus       297 --------------------------~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~  350 (536)
T PRK10946        297 --------------------------AQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDER  350 (536)
T ss_pred             --------------------------ccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCcccc
Confidence                                      001389999999999999999999998999999999999965433222222223


Q ss_pred             ccCccCCCC-CCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEE
Q 008787          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (553)
Q Consensus       434 ~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~  511 (553)
                      ...++|+|+ |+..+++++ +++  .++++|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|++|+||++++
T Consensus       351 ~~~~~G~p~~~~~~v~i~d-~~~--~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~  427 (536)
T PRK10946        351 IFTTQGRPMSPDDEVWVAD-ADG--NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITV  427 (536)
T ss_pred             ccccCCcccCCCceEEEEC-CCC--CCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEE
Confidence            347899998 789999998 544  455678999999999999999999999999888 689999999999999999999


Q ss_pred             EecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       512 ~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      .||.+|+|++ +|++++|.+||+.|.+||+|.+++|++.++
T Consensus       428 ~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~  467 (536)
T PRK10946        428 VGREKDQINR-GGEKIAAEEIENLLLRHPAVIHAALVSMED  467 (536)
T ss_pred             eccccceeec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCC
Confidence            9999999996 899999999999999999999999999865

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-54  Score=459.09  Aligned_cols=421  Identities=20%  Similarity=0.271  Sum_probs=337.9

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~-gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      ...++.++|.+++.  ++++++++.    +     +.+||.||.+++.++|++|+++ |++++++|+++++|++++++++
T Consensus         3 ~~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~   71 (529)
T PRK07867          3 SAPTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLL   71 (529)
T ss_pred             ccccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHH
Confidence            35678999988875  788998763    3     5899999999999999999997 8999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceee
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (553)
                      +||+++|++++|+++..+.+++.++++.++++++++++.....+....    ... .++.++.                .
T Consensus        72 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~-~~~~~~~----------------~  130 (529)
T PRK07867         72 GAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGV-RVINVDS----------------P  130 (529)
T ss_pred             HHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCc-eEEEecc----------------c
Confidence            999999999999999999999999999999999999987665432211    111 2222221                1


Q ss_pred             eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHH
Q 008787          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (553)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  278 (553)
                      .+.+++..............++++++++|||||||.||+|++||+++..........+     ++..+|++++.+|++|.
T Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~  205 (529)
T PRK07867        131 AWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-----GLGPDDVCYVSMPLFHS  205 (529)
T ss_pred             cHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-----CCCcccEEEEecchhHH
Confidence            2444333221112223345678999999999999999999999999988877766555     67788999999999999


Q ss_pred             HHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787          279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (553)
Q Consensus       279 ~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (553)
                      +++.. +..++..|+++++.+. ++..+++.++++++|++.++|+.+..++......                       
T Consensus       206 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~-----------------------  262 (529)
T PRK07867        206 NAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERP-----------------------  262 (529)
T ss_pred             HHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcc-----------------------
Confidence            99876 4557889999988766 8999999999999999999999988775311000                       


Q ss_pred             hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccC
Q 008787          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG  436 (553)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~  436 (553)
                                .            ...+++|. ++||+.+++.. ..+.+.+|.++++.||+||++..+.....   ...+
T Consensus       263 ----------~------------~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~~---~~~~  315 (529)
T PRK07867        263 ----------D------------DADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTPD---TPPG  315 (529)
T ss_pred             ----------c------------ccccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCCC---CCCC
Confidence                      0            00026774 56888887765 55666779999999999999866543321   2336


Q ss_pred             ccCCCCCCeeEEEeecCCCCCCCCCCCC------------CCeEEE-ecCCccccccCChhhhhhhccCCccccCceEEE
Q 008787          437 TAGPVSVYSELRLEEVPEMGYSPLDDPP------------CGEVCV-RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI  503 (553)
Q Consensus       437 ~~G~~~~~~~v~i~~~~~~~~~~~~~~~------------~Gei~v-~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~  503 (553)
                      ++|.+.++  +++++ ++.+ .+++.++            .|||++ +|++++.||+++++.+.+.+.+|||+|||+|++
T Consensus       316 ~~g~~~~~--~~i~~-~~~~-~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~  391 (529)
T PRK07867        316 ALGPLPPG--VAIVD-PDTG-TECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYR  391 (529)
T ss_pred             CcCCCCCC--EEEEE-CCCC-CCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEE
Confidence            78999999  66776 3322 2334445            899999 999999999999999998899999999999999


Q ss_pred             ccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       504 ~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +++|++++.||.+|+|++ +|++++|.+||++|.+||+|.+|+|+|.++
T Consensus       392 ~~~g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~  439 (529)
T PRK07867        392 DADGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPD  439 (529)
T ss_pred             eCCCcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccC
Confidence            999999999999999997 899999999999999999999999999875

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.8e-55  Score=461.70  Aligned_cols=447  Identities=23%  Similarity=0.279  Sum_probs=352.6

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      ....++.++|+++++++|++++++..     ..+..+++||+||.++++++|++|.+.|+++||+|+++++|+.++++++
T Consensus         7 ~~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~   81 (542)
T PRK06018          7 DWPLLCHRIIDHAARIHGNREVVTRS-----VEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAW   81 (542)
T ss_pred             cCCCCHHHHHHHHHHhCCCceEEEee-----ccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHH
Confidence            44579999999999999999999742     1233578999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceee
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (553)
                      +||+++|++++|+++..+.+++.++++.++++.++++.+....+.+... ..+....++...+....    .........
T Consensus        82 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~  156 (542)
T PRK06018         82 YGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIAD-KLPSVERYVVLTDAAHM----PQTTLKNAV  156 (542)
T ss_pred             HHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHh-hCCCccEEEEecccccc----cccCccccc
Confidence            9999999999999999999999999999999999999876655543322 12334444444322100    000011233


Q ss_pred             eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHH-HHH-hhchhhhccccCCCCCCcEEEEecChH
Q 008787          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA-TFV-SGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (553)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~  276 (553)
                      .+.+++..... ........++++++++|||||||.||+|.+||++++ ... ......+     ++..+|+++...|++
T Consensus       157 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~  230 (542)
T PRK06018        157 AYEEWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-----GTSAADTMLPVVPLF  230 (542)
T ss_pred             cHHHHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-----CCCCCCEEEEecCHH
Confidence            45555543321 222234566789999999999999999999999743 222 2222222     577889999999999


Q ss_pred             HHHHHHHHHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 008787          277 HILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (553)
Q Consensus       277 ~~~g~~~~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (553)
                      |.+++...+.++..|+++++...  ++..+++.++++++|++.++|+++..+++......                    
T Consensus       231 h~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------  290 (542)
T PRK06018        231 HANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG--------------------  290 (542)
T ss_pred             HHhhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC--------------------
Confidence            99988776778899999888653  78999999999999999999999998875322110                    


Q ss_pred             HHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC---
Q 008787          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---  431 (553)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~---  431 (553)
                                       .++        +++|.+++||+++++++.++|++ ++.++++.||+||++.+++......   
T Consensus       291 -----------------~~~--------~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~  344 (542)
T PRK06018        291 -----------------LKL--------PHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFS  344 (542)
T ss_pred             -----------------CCc--------ccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccc
Confidence                             011        38999999999999999999999 8999999999999987665432111   


Q ss_pred             -------ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEE
Q 008787          432 -------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI  503 (553)
Q Consensus       432 -------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~  503 (553)
                             .....+.|+|.+++++++++ +++...+.+.++.|||+++|++++.||++..   ...+ .+|||+|||+|++
T Consensus       345 ~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TGDl~~~  420 (542)
T PRK06018        345 KLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATI  420 (542)
T ss_pred             cCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcCCEEEE
Confidence                   01125789999999999999 6666566544568999999999999999832   2223 5789999999999


Q ss_pred             ccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       504 ~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ++||++++.||.+|+|++ +|++++|.+||+++..||+|.+|+|+|.++
T Consensus       421 ~~~g~~~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~  468 (542)
T PRK06018        421 DAYGYMRITDRSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYH  468 (542)
T ss_pred             cCCccEEEEecCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccC
Confidence            999999999999999996 899999999999999999999999999754

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=8.7e-55  Score=464.15  Aligned_cols=451  Identities=24%  Similarity=0.333  Sum_probs=343.1

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~  121 (553)
                      .|+...+..++..+|+++|+++.    +     .++||.||.++++++|..|.+.|+++||+|+++++|+++++++++||
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~   90 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVHG----S-----VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV   90 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence            46889999999999999999853    2     47999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccc------cccCccEEEEecCCchHHHHHHhhCCc
Q 008787          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR------SAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (553)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (553)
                      +++|++++|+++..+.+++.++++.++++++++++.......+....      .......++.+................
T Consensus        91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (567)
T PLN02479         91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK  170 (567)
T ss_pred             HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence            99999999999999999999999999999999988765443222110      001112333333211000000000112


Q ss_pred             eeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecCh
Q 008787          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (553)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  275 (553)
                      +...|.+++...............+++++++|||||||.||+|.+||.++..........+     .+..++++++.+|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~  245 (567)
T PLN02479        171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-----GMNEGAVYLWTLPM  245 (567)
T ss_pred             CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-----CCCCCCEEEEecch
Confidence            3345666655432111111122345677899999999999999999999876554433333     56788999999999


Q ss_pred             HHHHHHHHHHH-HHHcCcEEEEecCChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 008787          276 AHILDRVIEEY-FFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (553)
Q Consensus       276 ~~~~g~~~~~~-~l~~g~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (553)
                      +|.+++...+. .+..|.++++...++..+++.++++++|++.++|.++..|++......                    
T Consensus       246 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------  305 (567)
T PLN02479        246 FHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSET--------------------  305 (567)
T ss_pred             hhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcc--------------------
Confidence            99999765443 456666666655699999999999999999999999998865321000                    


Q ss_pred             HHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccC-----
Q 008787          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-----  429 (553)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~-----  429 (553)
                                      .        ...++++.++++|+++++++.+.+++. +.++++.||+||+++.+.....     
T Consensus       306 ----------------~--------~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~  360 (567)
T PLN02479        306 ----------------I--------LPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWD  360 (567)
T ss_pred             ----------------c--------ccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceecccccc
Confidence                            0        001378999999999999999999876 8899999999998654432210     


Q ss_pred             ----C-CccccCccCCCCCCee-EEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEE
Q 008787          430 ----D-EMCMVGTAGPVSVYSE-LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI  503 (553)
Q Consensus       430 ----~-~~~~~~~~G~~~~~~~-v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~  503 (553)
                          . ......+.|.+.++.+ +++++.+.+...+.+.++.|||+++|++++.||+++++.+.+.|.+|||+|||+|++
T Consensus       361 ~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~  440 (567)
T PLN02479        361 SLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVK  440 (567)
T ss_pred             ccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceecceeEEE
Confidence                0 0111135677888875 788773233333332236899999999999999999999999999999999999999


Q ss_pred             ccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       504 ~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |++|+++++||.+|+|++ +|++++|.+||++|.+||.|.+|+|+|.+.
T Consensus       441 ~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~  488 (567)
T PLN02479        441 HPDGYIEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPD  488 (567)
T ss_pred             cCCccEEEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccc
Confidence            999999999999999996 899999999999999999999999999864

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-54  Score=460.66  Aligned_cols=421  Identities=19%  Similarity=0.211  Sum_probs=335.1

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCchhHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl-~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      .++.++|..++  .|+++|+++.    +     ..+||.||.++++++|..|.+.|+ ++||+|+++++|+++++++++|
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~----~-----~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA   71 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYG----D-----RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA   71 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence            56888887764  7999999864    3     479999999999999999999999 8999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|++|..+.+++.++++.+++++++++......+.+..   .+... ++.++..                .+
T Consensus        72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~-~i~~~~~----------------~~  131 (540)
T PRK13388         72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LPGVR-VLDVDTP----------------AY  131 (540)
T ss_pred             HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---ccCce-EEEccch----------------hh
Confidence            9999999999999999999999999999999999887655442221   11222 2222211                12


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                      .+++..... ..+.....++++++++|||||||.||+|.++|.++..........+     ++..+|+++..+|++|.++
T Consensus       132 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  205 (540)
T PRK13388        132 AELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-----GLTRDDVCYVSMPLFHSNA  205 (540)
T ss_pred             hhhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-----CCCCCCEEEEeeCchhhcc
Confidence            333321111 1122235678999999999999999999999999988777666655     6788999999999999998


Q ss_pred             HHHH-HHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 008787          281 RVIE-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (553)
Q Consensus       281 ~~~~-~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (553)
                      +... ..++..|+++++.+. ++..+++.++++++|++..+|..+..++.....                          
T Consensus       206 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~--------------------------  259 (540)
T PRK13388        206 VMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPER--------------------------  259 (540)
T ss_pred             hHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCC--------------------------
Confidence            8754 457889999988765 899999999999999999999998876531000                          


Q ss_pred             cCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCcc
Q 008787          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  438 (553)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~  438 (553)
                                ..         ....+++.+ + |+++.++....+.+.++.++++.||+||++.++....   ....+++
T Consensus       260 ----------~~---------~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~---~~~~~~v  315 (540)
T PRK13388        260 ----------PD---------DADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP---GTPPGSI  315 (540)
T ss_pred             ----------cc---------ccccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecCC---CCCCCCC
Confidence                      00         000256643 3 5667888888888888999999999999987665432   1234789


Q ss_pred             CCCCCCeeEE-----------EeecCCCCCCCCCCCCCCeEEEe-cCCccccccCChhhhhhhccCCccccCceEEEccC
Q 008787          439 GPVSVYSELR-----------LEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN  506 (553)
Q Consensus       439 G~~~~~~~v~-----------i~~~~~~~~~~~~~~~~Gei~v~-~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~d  506 (553)
                      |+|++|+++.           ++|  +++....++++.|||+++ |++++.||+++++.+.+.|.+|||+|||+|++|+|
T Consensus       316 G~p~~g~~i~~~~~~~~~~~~~~d--~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~d  393 (540)
T PRK13388        316 GRGAPGVAIYNPETLTECAVARFD--AHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDAD  393 (540)
T ss_pred             CCCCCCcEEEcCCCCccccceecc--CccccccCCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCC
Confidence            9999997653           122  112122234578999998 99999999999999999898999999999999999


Q ss_pred             CcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |++++.||.+|+|++ +|++++|.+||++|.+||+|.+|+|+|.++
T Consensus       394 g~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~  438 (540)
T PRK13388        394 GWIYFAGRTADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPD  438 (540)
T ss_pred             CcEEEeccCCceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccC
Confidence            999999999999997 899999999999999999999999999865

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=2.1e-54  Score=456.02  Aligned_cols=435  Identities=22%  Similarity=0.226  Sum_probs=355.4

Q ss_pred             cccHHHHHHHH-HHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           41 LNTAWDIFSMS-VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        41 ~~~l~~~l~~~-a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      .++..+++.++ ++.+||++|++..    +     ..+||.||.++++++|.+|.+.|+++|++|+++++|+.+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~   73 (508)
T TIGR02262         3 YNAAEDLLDRNVVEGRGGKTAFIDD----I-----SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL   73 (508)
T ss_pred             chHHHHHHHHHHhcccCCceEEEeC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            46677888887 6779999999753    2     479999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeee
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (553)
                      ||+++|++++|+++..+.+++.++++.+++++++++......+.+... ..+....++..+....           ....
T Consensus        74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~  141 (508)
T TIGR02262        74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALG-KSPHLEHRVVVGRPEA-----------GEVQ  141 (508)
T ss_pred             HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHh-cCCCccEEEEeCCCCc-----------cccc
Confidence            999999999999999999999999999999999999876655433221 2233344444433211           1224


Q ss_pred             HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhc-hhhhccccCCCCCCcEEEEecChHHH
Q 008787          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV-DLFLDQFEDKMTVDDVYLSFLPLAHI  278 (553)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~  278 (553)
                      +.++..... .........++++++++|||||||.||+|++||+++...+... ...+     ++..+|+++..+|++|.
T Consensus       142 ~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~  215 (508)
T TIGR02262       142 LAELLATES-EQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-----GIREDDVVFSAAKLFFA  215 (508)
T ss_pred             HHHHhhcCC-CccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-----CCCCCCEEEEcCchHHH
Confidence            444443221 1222234467899999999999999999999999998776542 2222     67788999999999999


Q ss_pred             HHHHH-HHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 008787          279 LDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (553)
Q Consensus       279 ~g~~~-~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (553)
                      +++.. +..++..|+++++.+.  ++..+++.++++++|.+.++|.++..++....                        
T Consensus       216 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~------------------------  271 (508)
T TIGR02262       216 YGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPN------------------------  271 (508)
T ss_pred             HHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcc------------------------
Confidence            99865 5557889999888765  79999999999999999999998877643100                        


Q ss_pred             HhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCcccc
Q 008787          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (553)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~  435 (553)
                                   ...        ..+.++|.+++||+++++++.+.|.+.+++++++.||+||++.++..+..... ..
T Consensus       272 -------------~~~--------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~-~~  329 (508)
T TIGR02262       272 -------------LPA--------EDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDV-RY  329 (508)
T ss_pred             -------------ccc--------cccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCC-CC
Confidence                         000        00137999999999999999999999999999999999999986665433322 33


Q ss_pred             CccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEecc
Q 008787          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK  515 (553)
Q Consensus       436 ~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~  515 (553)
                      +++|.|.+++++++++ +++  .++++|+.|||+++|+.++.||+++++.+...|.++||+|||+|++++||.++++||.
T Consensus       330 ~~~G~~~~g~~v~i~d-~~~--~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~gR~  406 (508)
T TIGR02262       330 GTSGKPVPGYRLRLVG-DGG--QDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRT  406 (508)
T ss_pred             CCcCCCCCCcEEEEEC-CCC--CCCCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcCCccEEEeccc
Confidence            6899999999999999 555  4556678999999999999999999999999899999999999999999999999999


Q ss_pred             cCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          516 KNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       516 ~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|+|++ +|.+++|.+||+.|.+||+|.+++|+|.++
T Consensus       407 ~d~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~  442 (508)
T TIGR02262       407 DDMLKV-SGIYVSPFEIESALIQHPAVLEAAVVGVED  442 (508)
T ss_pred             cceeee-CCEEECHHHHHHHHHhCCCeeEEEEEeccc
Confidence            999997 799999999999999999999999999653

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=2.4e-54  Score=461.01  Aligned_cols=451  Identities=24%  Similarity=0.327  Sum_probs=352.4

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~-~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ..++.++|.++++++|+++|+++.    +     +.+||.||.+++.++|..|. +.|+++||+|+++++|++++++++|
T Consensus        24 ~~~~~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   94 (560)
T PRK08751         24 FRTVAEVFATSVAKFADRPAYHSF----G-----KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF   94 (560)
T ss_pred             CCcHHHHHHHHHHhCCCCceEEEC----C-----ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence            357999999999999999999863    3     58999999999999999997 6899999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCc------hHH-----HH
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT------AEQ-----KE  188 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-----~~  188 (553)
                      ||+++|++++|++|..+.+++.++++.++++++++++.....+.......  ....++......      ...     ..
T Consensus        95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (560)
T PRK08751         95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT--PVKQVITTGLGDMLGFPKAALVNFVVKY  172 (560)
T ss_pred             HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCC--CccEEEEechhhhcccccchhhhhhhhh
Confidence            99999999999999999999999999999999999887655443322211  122222221000      000     00


Q ss_pred             H----HhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCC
Q 008787          189 M----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT  264 (553)
Q Consensus       189 ~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~  264 (553)
                      .    ..........+.+..........+......+++++++|||||||.||+|.+||.++...+......+.... .+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~~~  251 (560)
T PRK08751        173 VKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTG-KLE  251 (560)
T ss_pred             hhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhcccc-ccC
Confidence            0    00000122334444433222222233456789999999999999999999999999877665443331110 122


Q ss_pred             C-CcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchH
Q 008787          265 V-DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (553)
Q Consensus       265 ~-~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~  340 (553)
                      . .+.+++..|++|.+++.. .+.++..|+++++...  ++..+++.++++++|++.++|.++..+.+..          
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----------  321 (560)
T PRK08751        252 EGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTP----------  321 (560)
T ss_pred             CCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCc----------
Confidence            3 357788999999999865 4456667777666543  8899999999999999999999998876411          


Q ss_pred             HHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccC
Q 008787          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET  420 (553)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~  420 (553)
                                                 ..+..++        +++|.+++||+++++.+.+.+++.+++.+++.||+||+
T Consensus       322 ---------------------------~~~~~~l--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~  366 (560)
T PRK08751        322 ---------------------------GFDQIDF--------SSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTET  366 (560)
T ss_pred             ---------------------------CcCCcch--------hhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccC
Confidence                                       0111122        27999999999999999999999889999999999999


Q ss_pred             CCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCc
Q 008787          421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGD  499 (553)
Q Consensus       421 g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD  499 (553)
                      +..++.+........+++|.|.+++++++++ +++.  +++.++.|||+++|+.++.||+++++.+.+.+ .+|||+|||
T Consensus       367 ~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD  443 (560)
T PRK08751        367 SPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGT--VLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGD  443 (560)
T ss_pred             CCceecccccccccCCCcCccCCCceEEEEC-CCCC--CCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccc
Confidence            8876655443334457899999999999999 5554  45567899999999999999999999998887 679999999


Q ss_pred             eEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       500 ~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|+++++|++++.||.+|+|++ +|++++|.+||++|..||+|.+|+|+|.++
T Consensus       444 ~~~~~~~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~  495 (560)
T PRK08751        444 IARMDEQGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPD  495 (560)
T ss_pred             eEEEcCCceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCC
Confidence            9999999999999999999997 799999999999999999999999999764

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.2e-54  Score=460.06  Aligned_cols=449  Identities=23%  Similarity=0.334  Sum_probs=347.3

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ..+++.++|..+++++|+++|+++.    +     +.+||.||.+++.++|++|.+.|+++||+|+++++|+.++++++|
T Consensus        22 ~~~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   92 (563)
T PRK06710         22 DIQPLHKYVEQMASRYPEKKALHFL----G-----KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY   92 (563)
T ss_pred             CcccHHHHHHHHHHHCCCceEEEec----C-----eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            3468999999999999999999864    3     579999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCc--h--HH------HH-
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT--A--EQ------KE-  188 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~------~~-  188 (553)
                      ||+++|++++|++|..+.+++.++++.++++++++++.....+......  .....++......  .  ..      .. 
T Consensus        93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (563)
T PRK06710         93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA--TKIEHVIVTRIADFLPFPKNLLYPFVQKK  170 (563)
T ss_pred             HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh--hccceeEEeccccccccccccccchhhcc
Confidence            9999999999999999999999999999999999987654433221110  1111222110000  0  00      00 


Q ss_pred             ---HHhh--CCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCC
Q 008787          189 ---MAVQ--TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (553)
Q Consensus       189 ---~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~  263 (553)
                         ....  .......|..+.... ...........+++++++|||||||.||+|.+||.++..........+    ...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~----~~~  245 (563)
T PRK06710        171 QSNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWL----YNC  245 (563)
T ss_pred             cccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhc----cCC
Confidence               0000  000000122221111 111111112357899999999999999999999999875543222211    022


Q ss_pred             -CCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchH
Q 008787          264 -TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (553)
Q Consensus       264 -~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~  340 (553)
                       ..++++++++|++|.+|+.. ...++..|+++++.+. ++..+++.++++++|++.++|+++..+++...         
T Consensus       246 ~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------  316 (563)
T PRK06710        246 KEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPL---------  316 (563)
T ss_pred             CCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCc---------
Confidence             34568899999999999865 4457889999888766 89999999999999999999999998764210         


Q ss_pred             HHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccC
Q 008787          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET  420 (553)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~  420 (553)
                                                  .....+        +++|.+++||+++++++.+++++.++.++++.||+||+
T Consensus       317 ----------------------------~~~~~~--------~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~  360 (563)
T PRK06710        317 ----------------------------LKEYDI--------SSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTES  360 (563)
T ss_pred             ----------------------------cccCCh--------hhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccC
Confidence                                        000111        27999999999999999999999889999999999999


Q ss_pred             CCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCce
Q 008787          421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI  500 (553)
Q Consensus       421 g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~  500 (553)
                      +.++...........+++|++.++..+++++ ++++ .+++.|+.|||+++|+.++.||+++++.+...+.+|||+|||+
T Consensus       361 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~  438 (563)
T PRK06710        361 SPVTHSNFLWEKRVPGSIGVPWPDTEAMIMS-LETG-EALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDV  438 (563)
T ss_pred             ccccccCcccccccCCccCCCCCCCeEEEEE-CCCC-ccCCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccce
Confidence            8765544332333347899999999999998 4433 4566778999999999999999999999998889999999999


Q ss_pred             EEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       501 g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |++++||.+++.||.+|+|++ +|.+++|.+||++|.+||.|.+|+|+|.++
T Consensus       439 ~~~~~~g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~  489 (563)
T PRK06710        439 GYMDEDGFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPD  489 (563)
T ss_pred             EEEcCCCcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEcccc
Confidence            999999999999999999997 899999999999999999999999999764

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-54  Score=454.79  Aligned_cols=410  Identities=23%  Similarity=0.293  Sum_probs=332.4

Q ss_pred             HHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEE
Q 008787           49 SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC  128 (553)
Q Consensus        49 ~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  128 (553)
                      +.+++.+|+++|+.+.  .++     +.+||.||.+.+.++|..|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~~~a~~~p~~~a~~~~--~~~-----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   74 (488)
T PRK09088          2 AFHARLQPQRLAAVDL--ALG-----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY   74 (488)
T ss_pred             chhhhhCCCceEEEec--CCC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            4567889999998752  022     589999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHHHHHhccc
Q 008787          129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  208 (553)
Q Consensus       129 v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  208 (553)
                      +|+++..+++++.++++.++++++++++.......           .                     ...++++.....
T Consensus        75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~---------------------~~~~~~~~~~~~  122 (488)
T PRK09088         75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------D---------------------VEDLAAFIASAD  122 (488)
T ss_pred             EeeCccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------c---------------------ccchhhhhhhcc
Confidence            99999999999999999999999999865432100           0                     011111111110


Q ss_pred             c-cccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHH-HHH
Q 008787          209 V-NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEY  286 (553)
Q Consensus       209 ~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~  286 (553)
                      . ..........+++++++|||||||.||++.+||+++...+..+....     ....++++++.+|++|.+|+.. +..
T Consensus       123 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~  197 (488)
T PRK09088        123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-----RVDAHSSFLCDAPMFHIIGLITSVRP  197 (488)
T ss_pred             ccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEecchHHHHHHHHHHHH
Confidence            0 01112234567899999999999999999999999987776655444     5678899999999999999876 555


Q ss_pred             HHHcCcEEEEecC-ChHHHHHHhh--hhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcC
Q 008787          287 FFRRGASVGYYHG-DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  363 (553)
Q Consensus       287 ~l~~g~~~~~~~~-~~~~~~~~i~--~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (553)
                      ++..|+++++.++ ++..++..+.  ++++|+++++|.++..+.+...                                
T Consensus       198 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~--------------------------------  245 (488)
T PRK09088        198 VLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG--------------------------------  245 (488)
T ss_pred             HHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC--------------------------------
Confidence            7888999888766 7888888886  4899999999999988753100                                


Q ss_pred             CcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCC--CccccCccCCC
Q 008787          364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EMCMVGTAGPV  441 (553)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~--~~~~~~~~G~~  441 (553)
                           .+...+        +++|.+++||++++.+..+.+.+. |+++++.||+||++.+.......  .....+++|.|
T Consensus       246 -----~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~  311 (488)
T PRK09088        246 -----FDAAAL--------RHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIP  311 (488)
T ss_pred             -----cCcccc--------ccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccC
Confidence                 000011        389999999999999988887765 89999999999998755432211  12244789999


Q ss_pred             CCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEEEecccCcee
Q 008787          442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (553)
Q Consensus       442 ~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~  520 (553)
                      .|++++++++ +++.  +++.|+.|||+|+|++++.||+++++.+++.+ .+|||+|||+|++|++|.+++.||.+|+|+
T Consensus       312 ~~~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~  388 (488)
T PRK09088        312 TPTVQTRVVD-DQGN--DCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFI  388 (488)
T ss_pred             CCCcEEEEEC-CCCC--CCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEE
Confidence            9999999998 5543  45567899999999999999999999998887 689999999999999999999999999999


Q ss_pred             cCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          521 ISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       521 ~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      + +|++++|.+||++|..||.|.+++|+|.++
T Consensus       389 ~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~  419 (488)
T PRK09088        389 S-GGENVYPAEIEAVLADHPGIRECAVVGMAD  419 (488)
T ss_pred             e-CCEEECHHHHHHHHHhCCCcceEEEEeCCC
Confidence            6 899999999999999999999999999764

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.2e-54  Score=456.41  Aligned_cols=420  Identities=21%  Similarity=0.237  Sum_probs=338.2

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.+.|..+++++|+++|+++.    +     +.+||.||.+++.++|++|++.|+++||+|+++++|++++++++||
T Consensus        34 ~~~~~~~~~~~a~~~p~~~a~~~~----~-----~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la  104 (516)
T PRK13383         34 GTNPYTLLAVTAARWPGRTAIIDD----D-----GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFA  104 (516)
T ss_pred             CCcHHHHHHHHHHHCCCCcEEEeC----C-----CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            578999999999999999999853    2     3799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++.++.+++.++++.++++.+++++.....+....       ..++.++....                
T Consensus       105 ~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~~----------------  161 (516)
T PRK13383        105 VGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD-------DAVAVIDPATA----------------  161 (516)
T ss_pred             HHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh-------cceEEeccchh----------------
Confidence            9999999999999999999999999999999999887655442211       11222221100                


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                       .. .   .  ....+...++.++++|||||||.||+|++||...... ......+.  ..++..++++++.+|++|.+|
T Consensus       162 -~~-~---~--~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~-~~~~~~~~--~~~~~~~d~~~~~~pl~h~~g  231 (516)
T PRK13383        162 -GA-E---E--SGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAV-GVWVTILD--RTRLRTGSRISVAMPMFHGLG  231 (516)
T ss_pred             -hh-h---c--CCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhh-hhHHhHHh--hhccCCCCeEEEecCCcchhh
Confidence             00 0   0  0011123456679999999999999999999743211 11111111  115678899999999999999


Q ss_pred             HHHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcc
Q 008787          281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (553)
Q Consensus       281 ~~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (553)
                      +...+.++..|+++++... +++.+++.++++++|.+.++|.++..|.+.......                        
T Consensus       232 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------------  287 (516)
T PRK13383        232 LGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRA------------------------  287 (516)
T ss_pred             HHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccc------------------------
Confidence            9877778899999887765 899999999999999999999999888642111000                        


Q ss_pred             CCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccC
Q 008787          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG  439 (553)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G  439 (553)
                                 .        ...+++|.+++||+++++++.+++.+.++..+++.||+||++..+...........+++|
T Consensus       288 -----------~--------~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G  348 (516)
T PRK13383        288 -----------R--------NPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETVG  348 (516)
T ss_pred             -----------c--------CCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCccc
Confidence                       0        001389999999999999999999999999999999999998766544433333457899


Q ss_pred             CCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEecccCce
Q 008787          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI  519 (553)
Q Consensus       440 ~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i  519 (553)
                      +|+|+++++|++ +++  .+++.|+.|||+++|+.++.+|++++.   +.+.+|||+|||+|++|++|++++.||.+|+|
T Consensus       349 ~~~~~~~~~i~d-~~~--~~~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TGDl~~~d~~G~l~i~GR~~~~i  422 (516)
T PRK13383        349 KPVAGCPVRILD-RNN--RPVGPRVTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTGDMGYLDNAGRLFIVGREDDMI  422 (516)
T ss_pred             CCCCCcEEEEEC-CCC--CCCCCCCceEEEEecCcccccccCCch---hheecCceecceeEEEcCCccEEEeccccceE
Confidence            999999999999 554  355567899999999999999998753   33468999999999999999999999999999


Q ss_pred             ecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          520 KISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       520 ~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ++ +|++++|.+||++|.+||.|.+++|+|.++
T Consensus       423 ~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~  454 (516)
T PRK13383        423 IS-GGENVYPRAVENALAAHPAVADNAVIGVPD  454 (516)
T ss_pred             EE-CCEEECHHHHHHHHHhCCCeeEEEEEeccc
Confidence            97 899999999999999999999999999764

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=4.2e-55  Score=450.01  Aligned_cols=403  Identities=31%  Similarity=0.470  Sum_probs=313.2

Q ss_pred             HHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCE
Q 008787           48 FSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI  127 (553)
Q Consensus        48 l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  127 (553)
                      |+++|+++||++|+++.   +.     +.+||+||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|++
T Consensus         1 f~~~a~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~   72 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDD---EG-----RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI   72 (417)
T ss_dssp             HHHHHHHSTTSEEEEET---TT-----EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred             ChhHHhhCCCceEEEEC---CC-----EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence            57899999999999861   12     79999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCChhHHHHHHhhcCceEEEE----cchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHHHH
Q 008787          128 CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEF  203 (553)
Q Consensus       128 ~v~l~~~~~~~~l~~~l~~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  203 (553)
                      ++|+++.++.+++.++++.++++++|+    +......+....... .....++.++.....             ....+
T Consensus        73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~  138 (417)
T PF00501_consen   73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQE-DPSSSIIILDRDDLP-------------KKEAL  138 (417)
T ss_dssp             EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTS-TTTEEEEEESHSSCT-------------TCHHH
T ss_pred             ccccccccccccccccccccceeEEEEeccccccccccchhhhccc-ccccccccccccccc-------------ccccc
Confidence            999999999999999999999999997    222222222222111 223444444432210             00111


Q ss_pred             HhcccccccccCC-CCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHH-
Q 008787          204 LHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR-  281 (553)
Q Consensus       204 ~~~~~~~~~~~~~-~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-  281 (553)
                      .......... .. ..++++++++|||||||.||+|.+||+++++.+..+.  +... .++.  |++++.+|++|.+|+ 
T Consensus       139 ~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~~-~~~~--d~~l~~~p~~~~~g~~  212 (417)
T PF00501_consen  139 KSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPEY-FGLG--DRILSFLPLSHIFGLI  212 (417)
T ss_dssp             HHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHHT-TTTT--TEEEESS-TTSHHHHH
T ss_pred             cccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccc--cccc-cccC--ceEEeecccccccccc
Confidence            1100000000 00 0568999999999999999999999999999987754  1111 1223  599999999999999 


Q ss_pred             HHHHHHHHcCcEEEEecC-C---hHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 008787          282 VIEEYFFRRGASVGYYHG-D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (553)
Q Consensus       282 ~~~~~~l~~g~~~~~~~~-~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (553)
                      ..++.++..|+++++++. .   ++.+++.++++++|+++++|.++..|++..+.. ...                    
T Consensus       213 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~~--------------------  271 (417)
T PF00501_consen  213 SALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-TKI--------------------  271 (417)
T ss_dssp             HHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HHG--------------------
T ss_pred             ccccccccccccccccccccccccccchhccccccccccccccccccccccccccc-ccc--------------------
Confidence            568889999999999987 2   577899999999999999999999987521110 000                    


Q ss_pred             ccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceEeeeccccCCCceeecc-CCCcccc
Q 008787          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCF-PDEMCMV  435 (553)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~i~~~YG~tE~g~~~~~~~-~~~~~~~  435 (553)
                                  ...        .++++|.+++||+++++++.+++++.++. ++++.||+||++.+++... .......
T Consensus       272 ------------~~~--------~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~  331 (417)
T PF00501_consen  272 ------------SKK--------DLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKP  331 (417)
T ss_dssp             ------------TTT--------TGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSST
T ss_pred             ------------ccc--------ccccccccccccccCChhhccccccccccccceecccccccceeeeccccccccccc
Confidence                        000        11379999999999999999999999987 9999999999999988664 2333345


Q ss_pred             CccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccC-CccccCceEEEccCCcEEEEec
Q 008787          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDR  514 (553)
Q Consensus       436 ~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~-g~~~TGD~g~~~~dG~l~~~GR  514 (553)
                      +++|.|+|+++++|+| ++++ .++++|+.|||+|+||+++.||+++|+.+.+.|.+ |||+|||+|++|+||+|+++||
T Consensus       332 ~~~G~~~~~~~~~ivd-~~~~-~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR  409 (417)
T PF00501_consen  332 GSVGKPLPGVEVKIVD-PNTG-EPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGR  409 (417)
T ss_dssp             TSEBEESTTEEEEEEC-TTTS-SBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEE
T ss_pred             cccccccccccccccc-cccc-ccccccccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEe
Confidence            7899999999999999 5422 44567799999999999999999999999999954 8999999999999999999999


Q ss_pred             ccCceec
Q 008787          515 KKNLIKI  521 (553)
Q Consensus       515 ~~d~i~~  521 (553)
                      .+|+|++
T Consensus       410 ~~~~i~~  416 (417)
T PF00501_consen  410 SDDMIKV  416 (417)
T ss_dssp             GSCEEEE
T ss_pred             eCCEEEe
Confidence            9999996

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-54  Score=464.99  Aligned_cols=435  Identities=19%  Similarity=0.247  Sum_probs=339.3

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      ....++.+.|.++++++|+++|+++.   +      +.+||+||.++++++|..|.+.|+++||+|+++++|++++++++
T Consensus        34 ~~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~  104 (600)
T PRK08279         34 DSKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAW  104 (600)
T ss_pred             CCcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence            45678999999999999999999874   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceee
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (553)
                      |||+++|++++++++.++.+++.++++.++++++|++.+....+.+..... .....++..++....          ...
T Consensus       105 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~  173 (600)
T PRK08279        105 LGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADL-ARPPRLWVAGGDTLD----------DPE  173 (600)
T ss_pred             HHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhh-cccceEEEecCcccc----------ccc
Confidence            999999999999999999999999999999999999987766553322211 122223332221100          011


Q ss_pred             eHHHHHhccccc----ccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecC
Q 008787          199 SWDEFLHLGKVN----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP  274 (553)
Q Consensus       199 ~~~~l~~~~~~~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  274 (553)
                      .+.++.......    .........+++++|+|||||||.||+|.+||+++...+..+...+     .+..++++++.+|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~l~~~d~~l~~~p  248 (600)
T PRK08279        174 GYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYCCLP  248 (600)
T ss_pred             cHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-----CCCCCcEEEEecC
Confidence            222322211111    1122334678999999999999999999999999999888776665     7888999999999


Q ss_pred             hHHHHHHHHHH-HHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 008787          275 LAHILDRVIEE-YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (553)
Q Consensus       275 ~~~~~g~~~~~-~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (553)
                      ++|.+|+...+ .++..|+++++.+. ++..+++.++++++|++.++|.++..+++.......                 
T Consensus       249 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~-----------------  311 (600)
T PRK08279        249 LYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTD-----------------  311 (600)
T ss_pred             chhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccc-----------------
Confidence            99999998654 46778888888776 899999999999999999999999887642110000                 


Q ss_pred             HHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceEeeeccccCCCceeeccCCC
Q 008787          353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDE  431 (553)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~i~~~YG~tE~g~~~~~~~~~~  431 (553)
                                                  ...++|.+  +|+.+++++.+.+.+.++. .+++.||+||++.... ...  
T Consensus       312 ----------------------------~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~-~~~--  358 (600)
T PRK08279        312 ----------------------------RDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFI-NVF--  358 (600)
T ss_pred             ----------------------------cCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeec-ccC--
Confidence                                        00266654  4777999999999998876 5999999999875433 221  


Q ss_pred             ccccCccCCCCC----CeeE---------EEeecCCCCCCCCCCCCCCeEE--EecCCccccccCChhhhhhhc------
Q 008787          432 MCMVGTAGPVSV----YSEL---------RLEEVPEMGYSPLDDPPCGEVC--VRGKTLFSGYYKNPDLTRESI------  490 (553)
Q Consensus       432 ~~~~~~~G~~~~----~~~v---------~i~~~~~~~~~~~~~~~~Gei~--v~~~~~~~gy~~~~~~~~~~~------  490 (553)
                       ...+++|++.+    +..+         .+.+ .++....++.|+.|||+  +.|+.++.|| ++++.+.+.+      
T Consensus       359 -~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~  435 (600)
T PRK08279        359 -NFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFK  435 (600)
T ss_pred             -CCCcccccccccccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccC
Confidence             22356776655    3322         2222 22333456678899998  7799999999 8888887765      


Q ss_pred             -cCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          491 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       491 -~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                       .++||+|||+|++|+||++++.||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|+++
T Consensus       436 ~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~  497 (600)
T PRK08279        436 KGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEV  497 (600)
T ss_pred             CCCceEeecceEEEcCCccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeec
Confidence             2579999999999999999999999999997 899999999999999999999999999763

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.9e-54  Score=458.46  Aligned_cols=450  Identities=21%  Similarity=0.269  Sum_probs=349.2

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ...++.+.|..+++.+|+++|+.+.    +     +.+||.||.+++.++|.+|.++|+++|++|+++++|+++++++++
T Consensus        31 ~~~~l~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~l  101 (567)
T PRK06178         31 GERPLTEYLRAWARERPQRPAIIFY----G-----HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFF  101 (567)
T ss_pred             CcccHHHHHHHHHHHCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHH
Confidence            3468999999999999999999864    3     479999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCch--HHHHHHhh-----
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA--EQKEMAVQ-----  192 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----  192 (553)
                      ||+++|++++|++|..+.+++.++++.++++++++++...+.+.+.....  ....++.......  ........     
T Consensus       102 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~  179 (567)
T PRK06178        102 GILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET--SLRHVIVTSLADVLPAEPTLPLPDSLRA  179 (567)
T ss_pred             HHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC--CcceEEEecccccccccccccccccccc
Confidence            99999999999999999999999999999999999988766554332211  2233332221110  00000000     


Q ss_pred             CCceeeeHHHHHhccc--ccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEE
Q 008787          193 TGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  270 (553)
Q Consensus       193 ~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~  270 (553)
                      .......+.++.....  ...........+++++++|||||||.||+|.+||.++...........    ..+..+++++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~----~~~~~~d~~l  255 (567)
T PRK06178        180 PRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGEDSVFL  255 (567)
T ss_pred             ccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh----ccCCCCcEEE
Confidence            0000011212222111  111122345678999999999999999999999999887655433221    1467889999


Q ss_pred             EecChHHHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 008787          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (553)
Q Consensus       271 ~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (553)
                      +.+|++|.+|+.. ++.++..|+++++.++ ++..++..++++++|.+.++|..+..+.+...                 
T Consensus       256 ~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~-----------------  318 (567)
T PRK06178        256 SFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR-----------------  318 (567)
T ss_pred             EecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC-----------------
Confidence            9999999999864 6668999999999886 89999999999999999999998887653100                 


Q ss_pred             HHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEE--EcCCCCCHHHHHHHHHhcCCceEe-eeccccCCCcee
Q 008787          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI--SGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTETCGPTT  425 (553)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~--~gG~~l~~~~~~~~~~~~~~~i~~-~YG~tE~g~~~~  425 (553)
                                          ....++        ++++.+.  ++++.+++++.+.+++.+|..++. .||+||++....
T Consensus       319 --------------------~~~~~l--------~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~  370 (567)
T PRK06178        319 --------------------FAEYDL--------SSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDT  370 (567)
T ss_pred             --------------------CCCCCc--------chheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccce
Confidence                                000111        2566654  446899999999999988877765 799999886654


Q ss_pred             eccCCC------ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCc
Q 008787          426 VCFPDE------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGD  499 (553)
Q Consensus       426 ~~~~~~------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD  499 (553)
                      ......      ...+.++|.|+||++++++| ++.+ .+++.|+.|||+++|++++.||+++++.+...+.+|||+|||
T Consensus       371 ~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d-~~~~-~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~TGD  448 (567)
T PRK06178        371 FTAGFQDDDFDLLSQPVFVGLPVPGTEFKICD-FETG-ELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGD  448 (567)
T ss_pred             eccccccCccccccCCcccccccCCcEEEEEc-CCCC-CcCCCCCceEEEEECCcccccccCChhhhhhcccCCceeecc
Confidence            432111      12346789999999999998 4332 445577899999999999999999999998888899999999


Q ss_pred             eEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       500 ~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|++++||+++++||.+|+|++ +|++++|.+||+++.++|+|.+++|+|.++
T Consensus       449 l~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~  500 (567)
T PRK06178        449 IGKIDEQGFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPD  500 (567)
T ss_pred             eEEEecCCeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcC
Confidence            9999999999999999999997 899999999999999999999999999764

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-53  Score=455.37  Aligned_cols=450  Identities=22%  Similarity=0.305  Sum_probs=349.6

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~-~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      +.++.++|..+++++|+++|+++.    +     +.+||.||.++++++|.+|.+ .|+++|++|+++++|++++++++|
T Consensus        22 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   92 (560)
T PRK08974         22 YQSLVDMFEQAVARYADQPAFINM----G-----EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF   92 (560)
T ss_pred             cccHHHHHHHHHHhCCCCceEEEC----C-----ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            467999999999999999999853    3     479999999999999999984 899999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchH--HHHH--------
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAE--QKEM--------  189 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------  189 (553)
                      ||+++|++++|+++..+.+++.++++.+++++++++......+.+....  .....++........  ....        
T Consensus        93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (560)
T PRK08974         93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFK--TPVKHVILTRMGDQLSTAKGTLVNFVVKY  170 (560)
T ss_pred             HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhh--cCcceEEEecccccccccccccccchhhh
Confidence            9999999999999999999999999999999999887654433221111  111111111100000  0000        


Q ss_pred             -----HhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCC
Q 008787          190 -----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT  264 (553)
Q Consensus       190 -----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~  264 (553)
                           .........++.+.................+++++++|||||||.||+|.++|.++..........+..  ....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~~  248 (560)
T PRK08974        171 IKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGP--LLHP  248 (560)
T ss_pred             cccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhcc--ccCC
Confidence                 000000112222222222111112223467899999999999999999999999998766543322210  0123


Q ss_pred             CCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHH
Q 008787          265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (553)
Q Consensus       265 ~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~  341 (553)
                      ..+.++..+|++|.+++.. .+.++..|+++++...  ++..+++.++++++|.+.++|+++..|.+....         
T Consensus       249 ~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~---------  319 (560)
T PRK08974        249 GKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEF---------  319 (560)
T ss_pred             CccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCc---------
Confidence            4567889999999999765 5556788888776643  888999999999999999999999988642100         


Q ss_pred             HHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCC
Q 008787          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC  421 (553)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g  421 (553)
                                                  ...++        +++|.+++||+++++.+.+.|++.+|.++++.||+||++
T Consensus       320 ----------------------------~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~  363 (560)
T PRK08974        320 ----------------------------QELDF--------SSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECS  363 (560)
T ss_pred             ----------------------------ccCCc--------cceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccC
Confidence                                        00111        389999999999999999999998899999999999998


Q ss_pred             CceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceE
Q 008787          422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG  501 (553)
Q Consensus       422 ~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g  501 (553)
                      ..+..+........+++|.|+|++++++++ +++  .+++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+|
T Consensus       364 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~  440 (560)
T PRK08974        364 PLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDG--NEVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIA  440 (560)
T ss_pred             ceeeccCCCCcccCCccccCcCCCEEEEEC-CCC--CCCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEE
Confidence            877665544434457899999999999999 554  45567799999999999999999999999888889999999999


Q ss_pred             EEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       502 ~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +++++|+++++||.+|+|++ +|.+++|.+||++|.+||+|.+++|+|.++
T Consensus       441 ~~~~~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~  490 (560)
T PRK08974        441 VMDEEGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPS  490 (560)
T ss_pred             EEcCCceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeec
Confidence            99999999999999999997 799999999999999999999999998764

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-53  Score=450.82  Aligned_cols=443  Identities=25%  Similarity=0.311  Sum_probs=336.9

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~  121 (553)
                      +++.+.|.+.++.+|+++|+++.    +     ..+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|||
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~   88 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIHG----D-----RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV   88 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC----C-----eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence            57889999999999999999864    2     47999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHH
Q 008787          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (553)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (553)
                      +++|++++|+++..+.+++..+++.++++.++++......+.+.... .+... .+.+......   ..........++.
T Consensus        89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~  163 (545)
T PRK08162         89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALAL-LPGPK-PLVIDVDDPE---YPGGRFIGALDYE  163 (545)
T ss_pred             HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhh-CCCCc-eEEEecCccc---cccCCCcccccHH
Confidence            99999999999999999999999999999999998876655333211 11111 1222111100   0000111233566


Q ss_pred             HHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHH
Q 008787          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (553)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~  281 (553)
                      +++...............+++++++|||||||.||+|+++|+++...+......+     .+..++++++.+|++|.+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~~~  238 (545)
T PRK08162        164 AFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-----GMPKHPVYLWTLPMFHCNGW  238 (545)
T ss_pred             HHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeeEeccCcHhhhhH
Confidence            6554321111111123456789999999999999999999998776655433333     56778899999999999998


Q ss_pred             HHHHHHHHcCcEEEEec-CChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccC
Q 008787          282 VIEEYFFRRGASVGYYH-GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (553)
Q Consensus       282 ~~~~~~l~~g~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (553)
                      ...+...+.|++.++.. .++..+++.++++++|++.++|.++..|++.......                         
T Consensus       239 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------------  293 (545)
T PRK08162        239 CFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRA-------------------------  293 (545)
T ss_pred             HHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCcccccc-------------------------
Confidence            76544444455544444 4999999999999999999999999988652110000                         


Q ss_pred             CcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC---------
Q 008787          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---------  431 (553)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~---------  431 (553)
                                          ...+.+.++++|+.+++++.+.+++. +.++++.||+||+++.+..+....         
T Consensus       294 --------------------~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~  352 (545)
T PRK08162        294 --------------------GIDHPVHAMVAGAAPPAAVIAKMEEI-GFDLTHVYGLTETYGPATVCAWQPEWDALPLDE  352 (545)
T ss_pred             --------------------CCccceEEEECCCCCCHHHHHHHHHh-CCceeecccccccCcceeecccccccccCCccc
Confidence                                00145667889999999999998875 999999999999876555432211         


Q ss_pred             -ccccCccCCCCCC-eeEEEeecCCCCCCCCC-CC-CCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCC
Q 008787          432 -MCMVGTAGPVSVY-SELRLEEVPEMGYSPLD-DP-PCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG  507 (553)
Q Consensus       432 -~~~~~~~G~~~~~-~~v~i~~~~~~~~~~~~-~~-~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG  507 (553)
                       .....+.|.+.+. ..++++| ++++ .+++ .| +.|||+++|+.++.||+++++.+...|.+|||+|||+|++|+||
T Consensus       353 ~~~~~~~~g~~~~~~~~~~i~d-~~~~-~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg  430 (545)
T PRK08162        353 RAQLKARQGVRYPLQEGVTVLD-PDTM-QPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDG  430 (545)
T ss_pred             hhhccCCCCcccCCcceEEEEc-CCCC-cccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcCCc
Confidence             0112345655543 3567777 4333 2332 23 47999999999999999999999999999999999999999999


Q ss_pred             cEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +++++||.+|+|++ +|++++|.+||+.|.+||+|.+|+|+|.++
T Consensus       431 ~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~  474 (545)
T PRK08162        431 YIKIKDRSKDIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPD  474 (545)
T ss_pred             cEEEEecccceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeec
Confidence            99999999999996 899999999999999999999999999764

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-53  Score=448.64  Aligned_cols=427  Identities=18%  Similarity=0.200  Sum_probs=330.4

Q ss_pred             HHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEe
Q 008787           50 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV  129 (553)
Q Consensus        50 ~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v  129 (553)
                      .+++++|+++|+.+.   +.  +  +.+||+||.++++++|..|.++|+++||+|+++++|++++++++|||+++|++++
T Consensus         5 ~~a~~~p~~~a~~~~---~~--~--~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~   77 (501)
T PRK13390          5 THAQIAPDRPAVIVA---ET--G--EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT   77 (501)
T ss_pred             hhhhhCCCCcEEEec---CC--C--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence            467889999999864   21  1  5899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccc
Q 008787          130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  209 (553)
Q Consensus       130 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  209 (553)
                      |+++..+++++.++++++++++++++.......... .   ......+.+.....           ....+++...... 
T Consensus        78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~---~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-  141 (501)
T PRK13390         78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAKV-G---ADLPLRLSFGGEID-----------GFGSFEAALAGAG-  141 (501)
T ss_pred             ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHh-h---hccceEEEecCccc-----------ccccHHHHhcccC-
Confidence            999999999999999999999999977543322111 0   01111122211100           1122333322110 


Q ss_pred             cccccCCCCCCCeEEEEecCCCCCCCceEEe--ccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHH
Q 008787          210 NEMEILPPQPFNICTIMYTSGTSGDPKGVVL--THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF  287 (553)
Q Consensus       210 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~--th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~  287 (553)
                         + .....++.++|+|||||||.||+|++  +|.++.......... ......+..++++++.+|++|.+++......
T Consensus       142 ---~-~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~  216 (501)
T PRK13390        142 ---P-RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAI-ARAFYDISESDIYYSSAPIYHAAPLRWCSMV  216 (501)
T ss_pred             ---C-CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhh-HHHHhCCCCCCeEEecccchhhhHHHHHHHH
Confidence               0 01122357999999999999999995  455544321111000 0001256788999999999999988665556


Q ss_pred             HHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcc
Q 008787          288 FRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS  366 (553)
Q Consensus       288 l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (553)
                      +..|+++++.+. ++..+++.|+++++|++.++|+++..+.+......                                
T Consensus       217 ~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------------  264 (501)
T PRK13390        217 HALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR--------------------------------  264 (501)
T ss_pred             HhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc--------------------------------
Confidence            678999888776 89999999999999999999999988864211000                                


Q ss_pred             hHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCCCCee
Q 008787          367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE  446 (553)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~  446 (553)
                         ...++        +++|.+++||+++++++.+.+++.++.++++.||+||+++++...........+++|+|+++ +
T Consensus       265 ---~~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~  332 (501)
T PRK13390        265 ---TRYDV--------SSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-D  332 (501)
T ss_pred             ---ccCCh--------hhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcccc-e
Confidence               00011        37899999999999999999999889999999999999876554433222334789999999 7


Q ss_pred             EEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhcc---CCccccCceEEEccCCcEEEEecccCceecCC
Q 008787          447 LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ  523 (553)
Q Consensus       447 v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~---~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~  523 (553)
                      +++++ +++  .++++|+.|||+++|++++.||+++++.+.+.+.   ++|++|||+|++|+||++++.||.+|+|++ +
T Consensus       333 ~~i~d-~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~-~  408 (501)
T PRK13390        333 LHICD-DDG--NELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIIS-G  408 (501)
T ss_pred             EEEEC-CCC--CCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeE-C
Confidence            99988 554  3456789999999999999999999999988762   679999999999999999999999999996 8


Q ss_pred             ceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          524 GEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       524 G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |++|+|.+||++|.+||.|.+|+|+|.++
T Consensus       409 G~~v~p~eIE~~l~~~~~v~~~~v~~~~~  437 (501)
T PRK13390        409 GVNIYPQETENALTMHPAVHDVAVIGVPD  437 (501)
T ss_pred             CeeeCHHHHHHHHHhCCCeeEEEEEeccC
Confidence            99999999999999999999999999865

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2.2e-54  Score=537.19  Aligned_cols=419  Identities=19%  Similarity=0.256  Sum_probs=354.1

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|..+++++|+++|+++.   +      +++||+||.++++++|+.|+++|+++|++|+++++|++++++++||
T Consensus      3094 ~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~la 3164 (3956)
T PRK12467       3094 ERLVHQLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLA 3164 (3956)
T ss_pred             cccHHHHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999875   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++.++.+++.++++.+++++++++......+...      ....++.++...                 
T Consensus      3165 vl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~------~~~~~~~~~~~~----------------- 3221 (3956)
T PRK12467       3165 VLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP------AGDTALTLDRLD----------------- 3221 (3956)
T ss_pred             HHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc------cCCceeeecchh-----------------
Confidence            999999999999999999999999999999999988765443111      011122222110                 


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                          ........+.....++++++++|||||||.||||+++|+++.+.+......+     ++..+|+++.+.|++|..+
T Consensus      3222 ----~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 3292 (3956)
T PRK12467       3222 ----LNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-----ELDANDRVLLFMSFSFDGA 3292 (3956)
T ss_pred             ----hcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-----CCCcCCEEEEecCccHhHH
Confidence                0011112223345788999999999999999999999999999988877666     7889999999999999988


Q ss_pred             HHHHHHHHHcCcEEEEecC---ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 008787          281 RVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (553)
Q Consensus       281 ~~~~~~~l~~g~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (553)
                      ....+.++..|+++++.+.   ++..+++.|+++++|++.++|+++..|++...                          
T Consensus      3293 ~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~-------------------------- 3346 (3956)
T PRK12467       3293 QERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG-------------------------- 3346 (3956)
T ss_pred             HHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc--------------------------
Confidence            8778889999999999874   78999999999999999999999988764210                          


Q ss_pred             ccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCCc----
Q 008787          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEM----  432 (553)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~~----  432 (553)
                                           ....++||.+++||+++++++.+.|.+.+ +..+++.||+||++..++.......    
T Consensus      3347 ---------------------~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 3405 (3956)
T PRK12467       3347 ---------------------GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCE 3405 (3956)
T ss_pred             ---------------------ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccC
Confidence                                 00114899999999999999999998877 6789999999999876664332211    


Q ss_pred             cccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCC-------ccccCceEEEc
Q 008787          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDG-------WFHTGDIGQIL  504 (553)
Q Consensus       433 ~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g-------~~~TGD~g~~~  504 (553)
                      ....++|+|++|++++|+| +++  .+++.|+.|||+|+|+.+++||+++|+.|++.| .++       ||+|||+|+++
T Consensus      3406 ~~~~~iG~p~~~~~~~v~d-~~~--~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~ 3482 (3956)
T PRK12467       3406 APYAPIGRPVAGRSIYVLD-GQL--NPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYR 3482 (3956)
T ss_pred             CCCCCCccccCCCEEEEEC-CCC--CCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheec
Confidence            1236799999999999998 554  456677999999999999999999999999998 443       69999999999


Q ss_pred             cCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecC
Q 008787          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSS  551 (553)
Q Consensus       505 ~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~  551 (553)
                      +||+|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++..
T Consensus      3483 ~dG~l~~~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~ 3528 (3956)
T PRK12467       3483 ADGVIEYLGRIDHQVKI-RGFRIELGEIEARLLQHPSVREAVVLARD 3528 (3956)
T ss_pred             CCCcEEEeccccceEee-ceEeecHHHHHHHHhhCcccceEEEEEec
Confidence            99999999999999998 79999999999999999999999999864

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=6.9e-54  Score=499.62  Aligned_cols=420  Identities=21%  Similarity=0.268  Sum_probs=349.5

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|.++++++|+++|+++.   +      +++||+||.++++++|+.|.+.|+++|++|+++++++.+++++++|
T Consensus       457 ~~~l~~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la  527 (1296)
T PRK10252        457 ETTLSALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA  527 (1296)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            368999999999999999999864   2      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++..+.+++.++++.+++++++++......+...     ... .++...                    
T Consensus       528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~-~~~~~~--------------------  581 (1296)
T PRK10252        528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDL-TSLCYN--------------------  581 (1296)
T ss_pred             HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCc-eeeecc--------------------
Confidence            999999999999999999999999999999999988765443111     011 111111                    


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                       ......  ...+.....++++++++|||||||.||||+++|+++.+.+......+     ++..+|++++..|++|..+
T Consensus       582 -~~~~~~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~  653 (1296)
T PRK10252        582 -APLAPQ--GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-----PLTADDVVLQKTPCSFDVS  653 (1296)
T ss_pred             -cccccc--cCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcchhhh
Confidence             100000  01111223578999999999999999999999999999888877666     7889999999999999888


Q ss_pred             HHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (553)
Q Consensus       281 ~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (553)
                      +...+.++..|+++++.+.    ++..+++.++++++|++.++|+++..+++.......                     
T Consensus       654 ~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~---------------------  712 (1296)
T PRK10252        654 VWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGA---------------------  712 (1296)
T ss_pred             HHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccc---------------------
Confidence            8778889999999998763    899999999999999999999999887653211100                     


Q ss_pred             hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC-----
Q 008787          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----  431 (553)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-----  431 (553)
                                            ....+++|.+++||+++++++.+.|.+.++.++++.||+||++..++......     
T Consensus       713 ----------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~  770 (1296)
T PRK10252        713 ----------------------RQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAA  770 (1296)
T ss_pred             ----------------------cccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccc
Confidence                                  00013799999999999999999999888999999999999987665443221     


Q ss_pred             -ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cC------CccccCceEEE
Q 008787          432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID------GWFHTGDIGQI  503 (553)
Q Consensus       432 -~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~------g~~~TGD~g~~  503 (553)
                       .....++|+|+++++++|+| +.+  .+++.|+.|||+|+|+.++.||+++|+.+.+.| .+      +||+|||+|++
T Consensus       771 ~~~~~~~iG~p~~~~~~~i~d-~~~--~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~  847 (1296)
T PRK10252        771 VRGSSVPIGYPVWNTGLRILD-ARM--RPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARW  847 (1296)
T ss_pred             cCCCCCCcccccCCCEEEEEC-CCC--CCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEE
Confidence             12235799999999999998 544  455677999999999999999999999999888 32      39999999999


Q ss_pred             ccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEec
Q 008787          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYS  550 (553)
Q Consensus       504 ~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~  550 (553)
                      ++||+++++||.|++|++ +|++|+|.|||++|.+||+|.+|+|++.
T Consensus       848 ~~~G~l~~~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~  893 (1296)
T PRK10252        848 LDDGAVEYLGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVTHAC  893 (1296)
T ss_pred             cCCCcEEEecccCCeEEE-eeEEecHHHHHHHHHhCccccceEEEEE
Confidence            999999999999999998 7999999999999999999999987754

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-53  Score=443.21  Aligned_cols=395  Identities=26%  Similarity=0.302  Sum_probs=325.4

Q ss_pred             HcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCC
Q 008787           53 QKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLY  132 (553)
Q Consensus        53 ~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~  132 (553)
                      ...++++|+++.    +     +++||.||.++++++|..|+     ++|+|+++++|++++++++|||+++|++++|++
T Consensus        11 ~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~   76 (471)
T PRK07787         11 AAADIADAVRIG----G-----RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVP   76 (471)
T ss_pred             cccCCceEEEeC----C-----cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecC
Confidence            456888998763    3     58999999999999999996     579999999999999999999999999999999


Q ss_pred             CCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHHHHHhccccccc
Q 008787          133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM  212 (553)
Q Consensus       133 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  212 (553)
                      +..+.+++.++++.+++++++++.....          ....... +...              ...+           .
T Consensus        77 ~~~~~~~l~~~l~~~~~~~il~~~~~~~----------~~~~~~~-~~~~--------------~~~~-----------~  120 (471)
T PRK07787         77 PDSGVAERRHILADSGAQAWLGPAPDDP----------AGLPHVP-VRLH--------------ARSW-----------H  120 (471)
T ss_pred             CCCChHHHHHHHHhcCCCEEEecCCccc----------cccccee-eecc--------------cccc-----------c
Confidence            9999999999999999999999763110          0011000 0000              0000           0


Q ss_pred             ccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcC
Q 008787          213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRG  291 (553)
Q Consensus       213 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~g  291 (553)
                      ......++++++++|||||||.||+|.+||+++...+..+...+     ++..++++++.+|++|.+|+.. .+.++..|
T Consensus       121 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G  195 (471)
T PRK07787        121 RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-----QWTADDVLVHGLPLFHVHGLVLGVLGPLRIG  195 (471)
T ss_pred             cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-----CCCccceeEeccCCeeechhHHHHHHHHhcC
Confidence            11124568999999999999999999999999998877766555     6778899999999999999886 56679999


Q ss_pred             cEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHH
Q 008787          292 ASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD  370 (553)
Q Consensus       292 ~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (553)
                      +++++.+. ++..+++.++ +++|++.++|.++..|.+.....                                     
T Consensus       196 ~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------  237 (471)
T PRK07787        196 NRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEAA-------------------------------------  237 (471)
T ss_pred             CEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcccc-------------------------------------
Confidence            99988776 8999999999 99999999999998886411000                                     


Q ss_pred             HHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEe
Q 008787          371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLE  450 (553)
Q Consensus       371 ~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~  450 (553)
                               ..++++|.+++||+++++++.+++.+.++.++++.||+||++...+.... ....++++|+|+++++++|+
T Consensus       238 ---------~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~vG~~~~g~~~~i~  307 (471)
T PRK07787        238 ---------RALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRAD-GERRPGWVGLPLAGVETRLV  307 (471)
T ss_pred             ---------ccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCC-CcccCCcccccCCCcEEEEE
Confidence                     00137999999999999999999999899999999999999865444332 23334789999999999999


Q ss_pred             ecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEEEecc-cCceecCCceeec
Q 008787          451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRK-KNLIKISQGEYVA  528 (553)
Q Consensus       451 ~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~GR~-~d~i~~~~G~~~~  528 (553)
                      + +++...+.+.++.|||+++|++++.||+++++.+.+.| .+|||+|||+|++++||+++++||. +++++. +|++++
T Consensus       308 d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~-~G~~v~  385 (471)
T PRK07787        308 D-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKS-GGYRIG  385 (471)
T ss_pred             C-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEee-CCEEEC
Confidence            9 65554432223489999999999999999999999888 5899999999999999999999996 789996 899999


Q ss_pred             chhHHHHHhcCcCcceEEEEecCC
Q 008787          529 LEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       529 ~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |.+||++|..+|.|.+++|+|.++
T Consensus       386 ~~eIE~~l~~~~~v~~~~v~~~~~  409 (471)
T PRK07787        386 AGEIETALLGHPGVREAAVVGVPD  409 (471)
T ss_pred             HHHHHHHHHhCCCcceEEEEcccc
Confidence            999999999999999999999864

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=2.3e-53  Score=447.81  Aligned_cols=416  Identities=17%  Similarity=0.216  Sum_probs=340.6

Q ss_pred             cHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 008787           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (553)
Q Consensus        43 ~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~  122 (553)
                      ++.+.|.+.++.+|+++|+...    +     +++||.||.+++.++|..|.+.|+++|++|+++++|+.++++++|||+
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~   71 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQ----G-----QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI   71 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcC----C-----cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence            5789999999999999999754    2     489999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHHH
Q 008787          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (553)
Q Consensus       123 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (553)
                      ++|++++|+++.++.+++.++++..+++.++++.........        .. ++.++.                  ...
T Consensus        72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--------~~-~~~~~~------------------~~~  124 (502)
T TIGR01734        72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--------TQ-IITLSA------------------LEQ  124 (502)
T ss_pred             HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC--------Cc-eEEchH------------------hhh
Confidence            999999999999999999999999999999998765332211        11 111111                  111


Q ss_pred             HHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHH
Q 008787          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  282 (553)
Q Consensus       203 l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~  282 (553)
                      +..... .........++++++++|||||||.||+|.++|.++..........+     ....++++++..|++|..++.
T Consensus       125 ~~~~~~-~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~  198 (502)
T TIGR01734       125 AETSGG-PVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-----PLSEGKQFLNQAPFSFDLSVM  198 (502)
T ss_pred             hhhhcC-CccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-----CCCCCceEEeecCceechhHH
Confidence            111110 11111234678899999999999999999999999998877665544     677889999999999999888


Q ss_pred             HHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 008787          283 IEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (553)
Q Consensus       283 ~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (553)
                      .++.++..|+++++.+.    ++..+++.+++++++.+.++|.++..++.....                          
T Consensus       199 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~--------------------------  252 (502)
T TIGR01734       199 DLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNF--------------------------  252 (502)
T ss_pred             HHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccc--------------------------
Confidence            78889999999988764    789999999999999999999998776431100                          


Q ss_pred             cCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccC-C---Ccc
Q 008787          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-D---EMC  433 (553)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~-~---~~~  433 (553)
                                 ..        ...++++.++++|+++++++.+.+.+.+ ++++++.||+||++........ .   ...
T Consensus       253 -----------~~--------~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  313 (502)
T TIGR01734       253 -----------NQ--------ENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQY  313 (502)
T ss_pred             -----------cc--------ccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccC
Confidence                       00        0114899999999999999999998887 7899999999998764443221 1   122


Q ss_pred             ccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhcc--C--CccccCceEEEccCCcE
Q 008787          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTGDIGQILPNGVV  509 (553)
Q Consensus       434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~--~--g~~~TGD~g~~~~dG~l  509 (553)
                      ...++|.+.|+++++|++ +++  .++++|+.|||+++|++++.||+++++.+.+.|.  +  +||+|||+|++|++ ++
T Consensus       314 ~~~~vg~~~~~~~~~i~~-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l  389 (502)
T TIGR01734       314 PRLPIGFAKPDMNLFIMD-EEG--EPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QL  389 (502)
T ss_pred             CccccccccCCCEEEEEC-CCC--CCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EE
Confidence            235789999999999999 554  4455678999999999999999999999888762  3  59999999999966 99


Q ss_pred             EEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEec
Q 008787          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYS  550 (553)
Q Consensus       510 ~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~  550 (553)
                      +++||.+|+|++ +|++|+|.+||+.+.+||.|.+|+|++.
T Consensus       390 ~i~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~  429 (502)
T TIGR01734       390 FYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPK  429 (502)
T ss_pred             EEeccccCeEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEE
Confidence            999999999997 8999999999999999999999999984

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=1.2e-52  Score=442.74  Aligned_cols=417  Identities=18%  Similarity=0.204  Sum_probs=343.4

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ++++.++|.++++.+|+++++...    +     ..+||.||.+.+.++|..|.+.|+++|++|+++++|+.++++++||
T Consensus         1 ~~~~~~~l~~~a~~~p~~~~~~~~----~-----~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a   71 (503)
T PRK04813          1 IMDIIETIEEFAQTQPDFPAYDYL----G-----EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLG   71 (503)
T ss_pred             CchHHHHHHHHHHhCCCceEEEeC----C-----cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            467899999999999999998753    2     4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++..+.+++.++++.+++++++++.......        ... ..                     +.+
T Consensus        72 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~---------------------~~~  121 (503)
T PRK04813         72 AVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------LGI-PV---------------------ITL  121 (503)
T ss_pred             HHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------cCC-cE---------------------Eeh
Confidence            999999999999999999999999999999999987641100        001 11                     111


Q ss_pred             HHHHhcc--cccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHH
Q 008787          201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (553)
Q Consensus       201 ~~l~~~~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  278 (553)
                      +++....  ...........++++++++|||||||.||+|.+||+++..........+     .+..+++++...|++|.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~  196 (503)
T PRK04813        122 DELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-----ALPEGPQFLNQAPYSFD  196 (503)
T ss_pred             HHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-----CCCcCceeeecCCcchh
Confidence            1111110  0111112234678899999999999999999999999998877665554     67788999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 008787          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (553)
Q Consensus       279 ~g~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (553)
                      .++..++.++..|+++++.+.    ++..+++.+++++++++.++|+++..++......                     
T Consensus       197 ~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~---------------------  255 (503)
T PRK04813        197 LSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFN---------------------  255 (503)
T ss_pred             HhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccC---------------------
Confidence            988777788999999988774    7899999999999999999999998764321100                     


Q ss_pred             HHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCC---
Q 008787          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD---  430 (553)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~---  430 (553)
                                              +...+++|.++++|+++++.+.+++.+.+ +..+++.||+||++...+.....   
T Consensus       256 ------------------------~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~  311 (503)
T PRK04813        256 ------------------------EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEM  311 (503)
T ss_pred             ------------------------cccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccc
Confidence                                    01114899999999999999999999988 78899999999997655432211   


Q ss_pred             -CccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhcc--CC--ccccCceEEEcc
Q 008787          431 -EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--DG--WFHTGDIGQILP  505 (553)
Q Consensus       431 -~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~--~g--~~~TGD~g~~~~  505 (553)
                       ......++|++.++.++++++ +++.  +++.++.|||+++|+.++.||+++++.+...|.  +|  ||+|||+|++ +
T Consensus       312 ~~~~~~~~~g~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~  387 (503)
T PRK04813        312 LDQYKRLPIGYAKPDSPLLIID-EEGT--KLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-E  387 (503)
T ss_pred             cccCCCCcccccCCCCEEEEEC-CCCC--CCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-e
Confidence             122335789999999999999 5554  445678999999999999999999999988872  44  9999999999 8


Q ss_pred             CCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecC
Q 008787          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSS  551 (553)
Q Consensus       506 dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~  551 (553)
                      ||++++.||.+|+|++ +|++++|.+||+.+.+||+|.+++|+|.+
T Consensus       388 ~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~  432 (503)
T PRK04813        388 DGLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYN  432 (503)
T ss_pred             CCeEEEeccccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEee
Confidence            9999999999999997 89999999999999999999999999854

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.5e-52  Score=440.46  Aligned_cols=429  Identities=20%  Similarity=0.193  Sum_probs=338.8

Q ss_pred             HHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEE
Q 008787           49 SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC  128 (553)
Q Consensus        49 ~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  128 (553)
                      ..+++++|+++|+++.   ++.    +.+||.||.+++.++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus         4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~   76 (511)
T PRK13391          4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY   76 (511)
T ss_pred             hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence            4677889999999864   221    579999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHHHHHhccc
Q 008787          129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  208 (553)
Q Consensus       129 v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  208 (553)
                      +++++..+.+++.++++.++++.++++........+... ........+.......         ......+.+......
T Consensus        77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  146 (511)
T PRK13391         77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLK-QCPGVRHRLVLDGDGE---------LEGFVGYAEAVAGLP  146 (511)
T ss_pred             eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHh-cCCCceEEEEecCCCC---------CcccccHHHHhcCCC
Confidence            999999999999999999999999999876654433222 1122333333332110         001223333332211


Q ss_pred             ccccccCCCCCCCeEEEEecCCCCCCCceEEe--ccHhHHHHH---hhchhhhccccCCCCCCcEEEEecChHHHHHHHH
Q 008787          209 VNEMEILPPQPFNICTIMYTSGTSGDPKGVVL--THETIATFV---SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  283 (553)
Q Consensus       209 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~--th~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~  283 (553)
                      .    ......++.++++|||||||.||+|.+  +|.++....   ......+     .+..++++++..|++|.+++..
T Consensus       147 ~----~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~  217 (511)
T PRK13391        147 A----TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-----GFRSDMVYLSPAPLYHSAPQRA  217 (511)
T ss_pred             C----CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-----CCCCCCeEEEcCCHHHHHHHHH
Confidence            1    111234567899999999999999995  465553322   2222222     5677899999999999999887


Q ss_pred             HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCc
Q 008787          284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ  362 (553)
Q Consensus       284 ~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (553)
                      .+.++..|+++++.+. +++.+++.++++++|++.++|.++..+++......                            
T Consensus       218 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------------  269 (511)
T PRK13391        218 VMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR----------------------------  269 (511)
T ss_pred             HHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc----------------------------
Confidence            7788999999988876 99999999999999999999999988764211100                            


Q ss_pred             CCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCC
Q 008787          363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS  442 (553)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~  442 (553)
                             +..        ..+++|.+++||+++++++.+++++.+|..+++.||+||++.++...........+++|++.
T Consensus       270 -------~~~--------~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~  334 (511)
T PRK13391        270 -------DKY--------DLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAM  334 (511)
T ss_pred             -------ccC--------CccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcc
Confidence                   000        11389999999999999999999998999999999999998876554433333447899999


Q ss_pred             CCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-c-CCccccCceEEEccCCcEEEEecccCcee
Q 008787          443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I-DGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (553)
Q Consensus       443 ~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~-~g~~~TGD~g~~~~dG~l~~~GR~~d~i~  520 (553)
                      ++ .+++++ +++  .+++.|+.|||+++|+ ++.||+++++.+.+.+ . ++||+|||+|++++||.+++.||.+|+|+
T Consensus       335 ~g-~~~i~d-~~~--~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~  409 (511)
T PRK13391        335 FG-DLHILD-DDG--AELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMII  409 (511)
T ss_pred             cc-eEEEEC-CCC--CCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEE
Confidence            99 688888 544  4445678999999999 8889999999998887 3 48999999999999999999999999999


Q ss_pred             cCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          521 ISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       521 ~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      + +|++++|.+||++|.+||.|.+|+|+|.++
T Consensus       410 ~-~G~~v~~~eie~~l~~~~~v~~~~v~~~~~  440 (511)
T PRK13391        410 S-GGVNIYPQEAENLLITHPKVADAAVFGVPN  440 (511)
T ss_pred             e-CCEEECHHHHHHHHHhCCCcceEEEEecCC
Confidence            6 899999999999999999999999998864

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.2e-53  Score=452.33  Aligned_cols=438  Identities=21%  Similarity=0.270  Sum_probs=338.8

Q ss_pred             CCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 008787           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC  111 (553)
Q Consensus        32 ~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~  111 (553)
                      ..+|..-.++.++.++|...++++|+..++ .     ...+.++.+||.||..++.++|.+|.++|+++||+|+++++|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~   84 (579)
T PRK09192         11 SSLPRRYADFPTLVEALDYAALGEAGMNFY-D-----RRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETD   84 (579)
T ss_pred             ccccccccchhhHHHHHHHhhccCCceEEE-e-----cCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence            345666667899999999999988865543 2     2223347899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCCEEeeCCCCCC-------hhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCch
Q 008787          112 PQWVEAMEACNALSLICVPLYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA  184 (553)
Q Consensus       112 ~~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (553)
                      ++++++++||+++|++++|+++...       .+++.++++.+++++++++......+.+....    .....       
T Consensus        85 ~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~----~~~~~-------  153 (579)
T PRK09192         85 GDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHG----NPLLH-------  153 (579)
T ss_pred             hhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcc----ccccc-------
Confidence            9999999999999999999976432       57899999999999999998766544332110    00000       


Q ss_pred             HHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchh-hhccccCCC
Q 008787          185 EQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKM  263 (553)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~-~~~~~~~~~  263 (553)
                                  ..++.++.... ..........++++++++|||||||.||+|.++|+++...+..... .+     ++
T Consensus       154 ------------~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-----~~  215 (579)
T PRK09192        154 ------------VLSHAWFKALP-EADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-----KV  215 (579)
T ss_pred             ------------eeehhhhcccC-CCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-----cC
Confidence                        11222222211 1112223356789999999999999999999999999988776554 34     67


Q ss_pred             CCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhh
Q 008787          264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (553)
Q Consensus       264 ~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~  337 (553)
                      ..+|+++.++|++|.+|+.. ++.++..|+++++.+.     ++..+++.+.++++++++.+|..+..+.......    
T Consensus       216 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~----  291 (579)
T PRK09192        216 RPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK----  291 (579)
T ss_pred             CCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc----
Confidence            88999999999999999875 4556888988877652     6889999999999987776555444432211000    


Q ss_pred             chHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC------Cce
Q 008787          338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFL  411 (553)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~i  411 (553)
                                                    .....++        +++|.+++||+++++++.+.+.+.++      ..+
T Consensus       292 ------------------------------~~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~  333 (579)
T PRK09192        292 ------------------------------DLAELDL--------SCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAF  333 (579)
T ss_pred             ------------------------------cccccch--------hhhheeEecCccCCHHHHHHHHHHHHhcCCChhhc
Confidence                                          0011122        38999999999999999999888763      248


Q ss_pred             EeeeccccCCCceeeccCCCc---------------------------cccCccCCCCCCeeEEEeecCCCCCCCCCCCC
Q 008787          412 VQGYGLTETCGPTTVCFPDEM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPP  464 (553)
Q Consensus       412 ~~~YG~tE~g~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~  464 (553)
                      ++.||+||+++..+.......                           ....++|.++|++++++++ +++.  .++.++
T Consensus       334 ~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~--~~~~g~  410 (579)
T PRK09192        334 MPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGM--PLPERV  410 (579)
T ss_pred             ccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCC--CCCCCC
Confidence            999999999876554322110                           0124789999999999999 5543  445678


Q ss_pred             CCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcc
Q 008787          465 CGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE  543 (553)
Q Consensus       465 ~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~  543 (553)
                      .|||+++|+.++.||+++ +.+.+.+ .+|||+|||+|++ ++|+++++||.+|+|++ +|++|+|.+||++|.+||+|.
T Consensus       411 ~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~  487 (579)
T PRK09192        411 VGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEPELR  487 (579)
T ss_pred             EEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcCCcc
Confidence            999999999999999999 5566555 7899999999999 89999999999999997 899999999999999999998


Q ss_pred             --eEEEEecCC
Q 008787          544 --DVSISYSSV  552 (553)
Q Consensus       544 --~~~V~g~~~  552 (553)
                        +|+|+|.++
T Consensus       488 ~~~~~v~~~~~  498 (579)
T PRK09192        488 SGDAAAFSIAQ  498 (579)
T ss_pred             CCcEEEEEecc
Confidence              899999765

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=5.2e-53  Score=439.38  Aligned_cols=387  Identities=25%  Similarity=0.297  Sum_probs=322.6

Q ss_pred             ccHHHHH-HHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           42 NTAWDIF-SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        42 ~~l~~~l-~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      +++.+.+ +++++++|+++|+.+.    +     +.+||.||.++++++|..|.+.|+++||+|+++++|+++++++++|
T Consensus         2 ~~~~~~~~~~~a~~~~~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la   72 (458)
T PRK09029          2 MIFSDWPWRHWAQVRPQAIALRLN----D-----EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLA   72 (458)
T ss_pred             chhhcChHHHHHHhCCCceeeecC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence            3444444 5668999999999753    3     4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++..+.+++..+++.+++++++++.+... ..        .....                      .+
T Consensus        73 ~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--------~~~~~----------------------~~  121 (458)
T PRK09029         73 LLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FS--------ALTSL----------------------HL  121 (458)
T ss_pred             HHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hh--------hcccc----------------------cc
Confidence            9999999999999999999999999999999998766422 10        00000                      00


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                      ..      ..........++++++++|||||||.||+|.+||++++..+......+     ++..+++++..+|++|.+|
T Consensus       122 ~~------~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~g  190 (458)
T PRK09029        122 QL------VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-----PFTAQDSWLLSLPLFHVSG  190 (458)
T ss_pred             cc------ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-----CCCccceEEEecCcHhhhh
Confidence            00      001112234678899999999999999999999999999888766655     6778899999999999999


Q ss_pred             HHHHHHHHHcCcEEEEecCChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccC
Q 008787          281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (553)
Q Consensus       281 ~~~~~~~l~~g~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (553)
                      +...+.++..|+++++.+.  ..+++.+  .++|.+..+|+++..+......                            
T Consensus       191 ~~~~~~~l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----------------------------  238 (458)
T PRK09029        191 QGIVWRWLYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----------------------------  238 (458)
T ss_pred             hHHHHHHHhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc----------------------------
Confidence            8777778999999988764  4566666  4789999999999887542110                            


Q ss_pred             CcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCC
Q 008787          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (553)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~  440 (553)
                                           ..++|.+++||+++++.+.+++... |.++++.||+||++...+....+.   ..++|+
T Consensus       239 ---------------------~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~---~~~~G~  293 (458)
T PRK09029        239 ---------------------PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVCAKRADG---LAGVGS  293 (458)
T ss_pred             ---------------------CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCcceeccCCCC---CCCCCC
Confidence                                 0279999999999999999998875 999999999999987655433221   256999


Q ss_pred             CCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEecccCcee
Q 008787          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (553)
Q Consensus       441 ~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~  520 (553)
                      |++++++++++              |||+++|+.++.||+++++.+.....+|||+|||+|++| ||++++.||.+|+|+
T Consensus       294 ~~~~~~~~i~~--------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~  358 (458)
T PRK09029        294 PLPGREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFF  358 (458)
T ss_pred             CCCCCEEEEeC--------------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCEEEEeccccccee
Confidence            99999999876              899999999999999998887665578999999999999 999999999999999


Q ss_pred             cCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          521 ISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       521 ~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      + +|++++|.+||++|.+||+|.+|+|+|.++
T Consensus       359 ~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~  389 (458)
T PRK09029        359 S-GGEGIQPEEIERVINQHPLVQQVFVVPVAD  389 (458)
T ss_pred             e-CCEEeCHHHHHHHHhcCCCcceEEEEccCC
Confidence            6 899999999999999999999999999875

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=3.1e-53  Score=534.87  Aligned_cols=422  Identities=19%  Similarity=0.245  Sum_probs=351.9

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|.++++++|+++|+++.   +      +.+||+||.++++++|+.|++.|+++|++|++++++++++++++||
T Consensus      2002 ~~~~~~~~~~~a~~~p~~~A~~~~---~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lA 2072 (5163)
T PRK12316       2002 GPGVHQRIAEQAARAPEAIAVVFG---D------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLA 2072 (5163)
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEcC---C------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            458999999999999999999865   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|++|.++.+++.++++++++++++++......+...     .... .+.++..                  
T Consensus      2073 il~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~-~~~~~~~------------------ 2128 (5163)
T PRK12316       2073 VLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AGVA-RLPLDRD------------------ 2128 (5163)
T ss_pred             HHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----cccc-eEeccch------------------
Confidence            999999999999999999999999999999999988765433110     0111 1111110                  


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                      ..+...  ....+.....++++++|+|||||||.||||+++|+++.+.+......+     ++..+++++.+.|++|..+
T Consensus      2129 ~~~~~~--~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 2201 (5163)
T PRK12316       2129 AEWADY--PDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-----ELSPADCELQFMSFSFDGA 2201 (5163)
T ss_pred             hhhhcc--CccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-----CCCCcceEEEecCchHHHH
Confidence            000000  111122345789999999999999999999999999999988877666     7888999999999999988


Q ss_pred             HHHHHHHHHcCcEEEEecC---ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 008787          281 RVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (553)
Q Consensus       281 ~~~~~~~l~~g~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (553)
                      +..++.++..|+++++.+.   ++..+++.++++++|++.++|+++..|.+.....                        
T Consensus      2202 ~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------------------ 2257 (5163)
T PRK12316       2202 HEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD------------------------ 2257 (5163)
T ss_pred             HHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcc------------------------
Confidence            8778889999999977654   7899999999999999999999999886532110                        


Q ss_pred             ccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCC-cc--
Q 008787          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MC--  433 (553)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~-~~--  433 (553)
                                            ....+||.+++||+++++++.+.|.+.+ +..+++.||+||++..++...... ..  
T Consensus      2258 ----------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 2315 (5163)
T PRK12316       2258 ----------------------GRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCG 2315 (5163)
T ss_pred             ----------------------cCCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccccccC
Confidence                                  0013799999999999999999998766 678999999999987665432221 11  


Q ss_pred             -ccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-c-------CCccccCceEEEc
Q 008787          434 -MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I-------DGWFHTGDIGQIL  504 (553)
Q Consensus       434 -~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~-------~g~~~TGD~g~~~  504 (553)
                       ...++|+|+++++++|+| +++  .+++.|+.|||+|+|+.+++||+++|+.|++.| .       ++||+|||+|+++
T Consensus      2316 ~~~~~iG~p~~~~~~~i~d-~~~--~~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~ 2392 (5163)
T PRK12316       2316 AAYVPIGRALGNRRAYILD-ADL--NLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYR 2392 (5163)
T ss_pred             CCcCCcccccCCCEEEEEC-CCC--CCCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEEc
Confidence             125799999999999999 554  355677999999999999999999999999988 2       2499999999999


Q ss_pred             cCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       505 ~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +||.|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++
T Consensus      2393 ~dG~l~~~GR~d~~iki-~G~rie~~eIE~~l~~~~~v~~a~v~~~~~ 2439 (5163)
T PRK12316       2393 ADGVVEYLGRIDHQVKI-RGFRIELGEIEARLQAHPAVREAVVVAQDG 2439 (5163)
T ss_pred             CCCcEEEecCCCCeEEE-cCccCChHHHHHHHhhCcccceEEEEEEec
Confidence            99999999999999998 799999999999999999999999998653

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=1.1e-52  Score=482.78  Aligned_cols=433  Identities=19%  Similarity=0.201  Sum_probs=340.6

Q ss_pred             cccHHHHHHHHHHcCC-CCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYP-GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p-~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ..++.+.|.++++++| ++.++.+.   ++     +++||+||.++++++|+.|++ |+++||+|+++++|+++++++++
T Consensus       630 ~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~l  700 (1140)
T PRK06814        630 DRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFF  700 (1140)
T ss_pred             cCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHH
Confidence            4667888888888886 55666532   22     479999999999999999975 99999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhh-ccccccccCccEEEEecCCchHHHHHHhhCCceee
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (553)
                      ||+++|++++|+++..+.+++.+++++++++++++++....... ............++.+++.....        ....
T Consensus       701 a~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~  772 (1140)
T PRK06814        701 ALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQI--------GLAD  772 (1140)
T ss_pred             HHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccC--------ChHH
Confidence            99999999999999999999999999999999999876543221 00001111222344433211000        0000


Q ss_pred             eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHH
Q 008787          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (553)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  278 (553)
                      .+........ ...+.+...++++++++|||||||.||+|.+||+++...+......+     ++..+|++++.+|++|.
T Consensus       773 ~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~  846 (1140)
T PRK06814        773 KIKGLLAGRF-PLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-----DFSPEDKVFNALPVFHS  846 (1140)
T ss_pred             HHHHHhhccC-CccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-----CCCCcCEEEEecchHHH
Confidence            1111111110 11111235678999999999999999999999999998887766655     67889999999999999


Q ss_pred             HHHHH-HHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 008787          279 LDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (553)
Q Consensus       279 ~g~~~-~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (553)
                      +++.. .+.++..|+++++.+.  +...+.+.++++++|++.++|+++..+.+...                        
T Consensus       847 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~------------------------  902 (1140)
T PRK06814        847 FGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH------------------------  902 (1140)
T ss_pred             HHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc------------------------
Confidence            99854 6668999999988764  66788899999999999999999987754210                        


Q ss_pred             HhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCcccc
Q 008787          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (553)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~  435 (553)
                                     ..        ..+++|.+++||+++++++.+.+.+.++.++++.||+||++.....+.+.. ...
T Consensus       903 ---------------~~--------~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~  958 (1140)
T PRK06814        903 ---------------PY--------DFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMH-NKA  958 (1140)
T ss_pred             ---------------cc--------cccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCC-CCC
Confidence                           00        013899999999999999999999989999999999999988766554332 334


Q ss_pred             CccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhh-hhccCCccccCceEEEccCCcEEEEec
Q 008787          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR-ESIIDGWFHTGDIGQILPNGVVKIIDR  514 (553)
Q Consensus       436 ~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~-~~~~~g~~~TGD~g~~~~dG~l~~~GR  514 (553)
                      +++|+|.|++++++.+ .++      .++.|||+++|++++.||+++++... +...+|||+|||+|++|+||++++.||
T Consensus       959 ~~vG~p~~g~~~~~~~-~~~------~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR 1031 (1140)
T PRK06814        959 GTVGRLLPGIEYRLEP-VPG------IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGR 1031 (1140)
T ss_pred             CcCCccCCCCeEEEee-cCC------CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEec
Confidence            7899999999999987 321      24689999999999999998764332 123689999999999999999999999


Q ss_pred             ccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          515 KKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       515 ~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      .||+|++ +|++++|.|||+++.+||.|.+|+|+|.++
T Consensus      1032 ~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~ 1068 (1140)
T PRK06814       1032 AKRFAKI-AGEMISLAAVEELAAELWPDALHAAVSIPD 1068 (1140)
T ss_pred             ccCeeee-CCEEECHHHHHHHHHhcCCcccEEEEEccc
Confidence            9999996 899999999999999999999999999875

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=8.1e-53  Score=523.23  Aligned_cols=422  Identities=20%  Similarity=0.226  Sum_probs=352.2

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|.++++++|+++|+++.   +      +.+||+||.++++++|+.|.++|+++|++|++++++++++++++||
T Consensus      1573 ~~~~~~~~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~la 1643 (3956)
T PRK12467       1573 ARLVHQLIEDQAAATPEAVALVFG---E------QELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLA 1643 (3956)
T ss_pred             cccHHHHHHHHHHhCCCCeEEEeC---C------cEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHH
Confidence            467999999999999999999864   3      4899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|++|.++.+++.++++++++++++++......+...     ... .++.++...                 
T Consensus      1644 vlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~-----~~~-~~~~~~~~~----------------- 1700 (3956)
T PRK12467       1644 ILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLP-----DGL-RSLVLDQED----------------- 1700 (3956)
T ss_pred             hhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccc-----cCC-cEEEecccc-----------------
Confidence            999999999999999999999999999999999987655433110     111 222222211                 


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                       .+.... ....+.....++++++++|||||||.||||+++|+++.+.+......+     ++..+++++...|+.|..+
T Consensus      1701 -~~~~~~-~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 1773 (3956)
T PRK12467       1701 -DWLEGY-SDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAY-----QLSAADVVLQFTSFAFDVS 1773 (3956)
T ss_pred             -chhccC-CCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc-----CCCcccEEEEecCccHHHH
Confidence             000111 111222345678999999999999999999999999999888776665     7888999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (553)
Q Consensus       281 ~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (553)
                      +..++.++..|+++++.+.    +++.+++.|+++++|++.++|+++..|.+.... .                      
T Consensus      1774 ~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-~---------------------- 1830 (3956)
T PRK12467       1774 VWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQ-V---------------------- 1830 (3956)
T ss_pred             HHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhccc-c----------------------
Confidence            8878889999999999764    789999999999999999999999988652100 0                      


Q ss_pred             hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCC----C
Q 008787          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD----E  431 (553)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~----~  431 (553)
                                             ...+++|.+++||+++++++.+.|.+.+ +..+++.||+||++..++.....    .
T Consensus      1831 -----------------------~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~ 1887 (3956)
T PRK12467       1831 -----------------------EHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLE 1887 (3956)
T ss_pred             -----------------------ccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccc
Confidence                                   0014899999999999999999888776 57799999999998766543321    1


Q ss_pred             ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhcc--------CCccccCceEEE
Q 008787          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQI  503 (553)
Q Consensus       432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~--------~g~~~TGD~g~~  503 (553)
                      .....++|+|+++++++|.| +++  .+++.|+.|||+|+|+.+++||+++|+.|++.|.        ++||+|||+|++
T Consensus      1888 ~~~~~~iG~p~~~~~~~vld-~~~--~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~ 1964 (3956)
T PRK12467       1888 GRDSVPIGQPIANLSTYILD-ASL--NPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARY 1964 (3956)
T ss_pred             cCCCCCcccccCCCEEEEEC-CCC--CCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceEEE
Confidence            12236899999999999998 544  4566779999999999999999999999999882        249999999999


Q ss_pred             ccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecC
Q 008787          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSS  551 (553)
Q Consensus       504 ~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~  551 (553)
                      ++||.|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+
T Consensus      1965 ~~dG~l~~~GR~D~qVki-~G~rIel~eIE~~l~~~p~V~~a~vv~~~ 2011 (3956)
T PRK12467       1965 RADGVIEYLGRIDHQVKI-RGFRIELGEIEARLREQGGVREAVVIAQD 2011 (3956)
T ss_pred             CCCCCEEEecccCceEEe-CeEEechHHHHHHHHhCCCcceEEEEEec
Confidence            999999999999999998 79999999999999999999999999875

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=9.5e-53  Score=434.24  Aligned_cols=361  Identities=19%  Similarity=0.213  Sum_probs=295.9

Q ss_pred             EeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEE
Q 008787           76 WKTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (553)
Q Consensus        76 ~~Ty~el~~~v~~la~~L~~~gl-~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~  154 (553)
                      -+.|+||.+++.++|++|.+.|+ ++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++++
T Consensus        19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~   98 (452)
T PRK07445         19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG   98 (452)
T ss_pred             ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence            37899999999999999999988 57999999999999999999999999999999999999999999999999999998


Q ss_pred             cchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCC
Q 008787          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD  234 (553)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  234 (553)
                      +.......                ....                .         .   ......++++++++|||||||.
T Consensus        99 ~~~~~~~~----------------~~~~----------------~---------~---~~~~~~~~~~~~i~~TSGTTG~  134 (452)
T PRK07445         99 LDQLKLSH----------------PPPL----------------P---------S---QGILPNLETGWIMIPTGGSSGQ  134 (452)
T ss_pred             cCcccccc----------------CCCC----------------C---------c---cccCCCCCCcEEEEeCCCCCCC
Confidence            76532100                0000                0         0   0011346789999999999999


Q ss_pred             CceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcC
Q 008787          235 PKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKP  313 (553)
Q Consensus       235 pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~  313 (553)
                      ||+|++||+++...+......+     ++.. ++.++.+|++|.+|+...+.++..|+++++.+. ..........++++
T Consensus       135 PKgV~~t~~~l~~~~~~~~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~  208 (452)
T PRK07445        135 IRFAIHTWETLTASVQGFQRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSD  208 (452)
T ss_pred             CcEEEechHHHHHHHHHHHHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCc
Confidence            9999999999988777665544     3433 467889999999999877788999999988764 23333344457889


Q ss_pred             cEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCC
Q 008787          314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA  393 (553)
Q Consensus       314 t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~  393 (553)
                      +++.++|+++..+++..   ..                                     .+        +++|.+++||+
T Consensus       209 t~~~~vP~~l~~l~~~~---~~-------------------------------------~l--------~~l~~i~~gG~  240 (452)
T PRK07445        209 FFLSLVPTQLQRLLQLR---PQ-------------------------------------WL--------AQFRTILLGGA  240 (452)
T ss_pred             eEEEehHHHHHHHHhhC---hh-------------------------------------hh--------hcceEEEECCc
Confidence            99999999999876410   00                                     01        38999999999


Q ss_pred             CCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC-ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEec
Q 008787          394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG  472 (553)
Q Consensus       394 ~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~  472 (553)
                      ++++++.+.++.. +.++++.||+||++...+...+.. .....++|+|+|++++++++           ++.|||+|+|
T Consensus       241 ~l~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~-----------g~~Gel~v~g  308 (452)
T PRK07445        241 PAWPSLLEQARQL-QLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA-----------NQTGNITIQA  308 (452)
T ss_pred             cCCHHHHHHHHhc-CCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC-----------CCcceEEEeC
Confidence            9999999988764 899999999999886554433322 22346899999999999872           3579999999


Q ss_pred             CCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          473 KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       473 ~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +.++.||++++..     .+|||+|||+|++|+||+|++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus       309 ~~~~~gY~~~~~~-----~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~  382 (452)
T PRK07445        309 QSLALGYYPQILD-----SQGIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPD  382 (452)
T ss_pred             CccchhhcCCccC-----CCCEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccC
Confidence            9999999976421     4789999999999999999999999999996 899999999999999999999999999865

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=5.1e-53  Score=427.26  Aligned_cols=448  Identities=20%  Similarity=0.249  Sum_probs=358.4

Q ss_pred             CCcccHHHHH-HHHHHc-CCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 008787           39 SDLNTAWDIF-SMSVQK-YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (553)
Q Consensus        39 ~~~~~l~~~l-~~~a~~-~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~  116 (553)
                      +.+.|+...+ .++... .++.+++++.   +...+....+||.|+.+++.++|..|.+.|+++||+|++.+|+.++.++
T Consensus        60 g~~ln~~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~i  136 (626)
T KOG1175|consen   60 GAFLNACYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVI  136 (626)
T ss_pred             cchhhhhHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHH
Confidence            4455555444 444333 4899999887   4444444559999999999999999998899999999999999999999


Q ss_pred             HHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccc------------cccccCccEEEEecCCch
Q 008787          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD------------CRSAQRLRVMVCFTSLTA  184 (553)
Q Consensus       117 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~  184 (553)
                      +++||.++|++..++....++.++...++.++++++++.+..........            ..........+.+.... 
T Consensus       137 a~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-  215 (626)
T KOG1175|consen  137 AMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRN-  215 (626)
T ss_pred             HHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEeccc-
Confidence            99999999999999999999999999999999999998875332211110            00000111111111111 


Q ss_pred             HHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhh-chhhhccccCCC
Q 008787          185 EQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKM  263 (553)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~  263 (553)
                                 ....|+.+..... ...+....+.+|+.+|+|||||||.||++.+|+......... ....+     ++
T Consensus       216 -----------~d~~~~~~~~~a~-~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~-----d~  278 (626)
T KOG1175|consen  216 -----------RDLFWSLELKKAS-PEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHF-----DL  278 (626)
T ss_pred             -----------ccccHHHHhhhcC-CCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceec-----cC
Confidence                       1235555555443 333467789999999999999999999999998866544443 33333     78


Q ss_pred             CCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC---ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhch
Q 008787          264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP  339 (553)
Q Consensus       264 ~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~  339 (553)
                      .++|+++++..+.|+.|.++ ++.+++.|+++++.++   ++..+++.+.++++|.+++.|+.++.|.+...+...    
T Consensus       279 q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~----  354 (626)
T KOG1175|consen  279 QPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVT----  354 (626)
T ss_pred             CCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcccccc----
Confidence            89999999999999999987 5569999999999876   789999999999999999999999987543222211    


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceEeeeccc
Q 008787          340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLT  418 (553)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~i~~~YG~t  418 (553)
                                                     ..++        ++||.+.++|+++.++..+++.+.++. +|++.||+|
T Consensus       355 -------------------------------~~~~--------~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qt  395 (626)
T KOG1175|consen  355 -------------------------------SYSL--------KSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQT  395 (626)
T ss_pred             -------------------------------cccc--------ceEEEEeecCccCCcchHHHHHHhcCccchhhceeee
Confidence                                           1111        279999999999999999999999987 699999999


Q ss_pred             cCCCceeeccCCC-ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEec--C-CccccccCChhhhhhhc---c
Q 008787          419 ETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--K-TLFSGYYKNPDLTRESI---I  491 (553)
Q Consensus       419 E~g~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~--~-~~~~gy~~~~~~~~~~~---~  491 (553)
                      |+|+.+....... ..++++.+.|.+|+.+.|.| +++...+..+ +.|+|+++.  | ..+++|++|++....++   .
T Consensus       396 EtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~  473 (626)
T KOG1175|consen  396 ETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKF  473 (626)
T ss_pred             ccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhcccC
Confidence            9999999888777 67779999999999999999 6666555544 889999998  3 77899999999555554   3


Q ss_pred             CCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCCC
Q 008787          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSVS  553 (553)
Q Consensus       492 ~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~~  553 (553)
                      .|+|.|||.|++|+||++++.||.||+|++ +|.++.+.|||+++.+||.|.|++|||.++.
T Consensus       474 pg~y~tGD~~~rd~dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~  534 (626)
T KOG1175|consen  474 PGYYFTGDGGRRDEDGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDP  534 (626)
T ss_pred             CceEEecCceEEcCCceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCC
Confidence            799999999999999999999999999997 7999999999999999999999999999873

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.3e-52  Score=529.33  Aligned_cols=421  Identities=19%  Similarity=0.227  Sum_probs=352.7

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|.++++++|+++|+++.   +      +++||+||.++++++|+.|.+.|+++|++|+++++|++++++++||
T Consensus       510 ~~~~~~~~~~~a~~~p~~~A~~~~---~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la  580 (5163)
T PRK12316        510 QRGVHRLFEEQVERTPEAPALAFG---E------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLA  580 (5163)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            467999999999999999999864   3      4899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|++|.++.+++.++++.+++++++++......+..      .....++.++....                
T Consensus       581 ~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~----------------  638 (5163)
T PRK12316        581 ILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL------AAGVQVLDLDRPAA----------------  638 (5163)
T ss_pred             HHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc------ccCceEEEecCcch----------------
Confidence            99999999999999999999999999999999998765443211      11112233322110                


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                        ..... ....+.....++++++++|||||||.||||+++|+++.+.+......+     ++..+++++...|++|..+
T Consensus       639 --~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~fd~~  710 (5163)
T PRK12316        639 --WLEGY-SEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-----GLGVGDTVLQKTPFSFDVS  710 (5163)
T ss_pred             --hhccC-CCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-----CCCCCCEEEeeCCeehHHH
Confidence              00000 111222345678999999999999999999999999999988877666     7888999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (553)
Q Consensus       281 ~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (553)
                      +...+.++..|+++++.+.    ++..+++.++++++|++.++|++++.|++....                        
T Consensus       711 ~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~------------------------  766 (5163)
T PRK12316        711 VWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDV------------------------  766 (5163)
T ss_pred             HHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcccc------------------------
Confidence            8888889999999999752    899999999999999999999999988641100                        


Q ss_pred             hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeecc-CCCccc
Q 008787          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCF-PDEMCM  434 (553)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~-~~~~~~  434 (553)
                                             ...+++|.+++||+++++++.+.+.+.+ +.++++.||+||++..++... ......
T Consensus       767 -----------------------~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~  823 (5163)
T PRK12316        767 -----------------------ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGD  823 (5163)
T ss_pred             -----------------------ccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCC
Confidence                                   0013899999999999999999987665 788999999999986544332 222233


Q ss_pred             cCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhcc-------CCccccCceEEEccCC
Q 008787          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG  507 (553)
Q Consensus       435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~-------~g~~~TGD~g~~~~dG  507 (553)
                      ..++|+|++|++++|+| +++  .+++.|+.|||+|+|+.++.||+++|+.|++.|.       ++||+|||+|++++||
T Consensus       824 ~~~iG~p~~~~~~~i~d-~~~--~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG  900 (5163)
T PRK12316        824 SVPIGRPIANLACYILD-ANL--EPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADG  900 (5163)
T ss_pred             CCCCccccCCCEEEEEC-CCC--CCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCC
Confidence            46899999999999999 554  4566779999999999999999999999998872       2499999999999999


Q ss_pred             cEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecC
Q 008787          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSS  551 (553)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~  551 (553)
                      .|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+
T Consensus       901 ~l~~~GR~d~~ik~-~G~rI~~~EIE~~l~~~p~V~~a~V~~~~  943 (5163)
T PRK12316        901 VIEYAGRIDHQVKL-RGLRIELGEIEARLLEHPWVREAAVLAVD  943 (5163)
T ss_pred             CEEeecccCCEEEE-ceEEcChHHHHHHHHhCCCcceEEEEEcC
Confidence            99999999999998 79999999999999999999999999874

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.3e-52  Score=447.30  Aligned_cols=435  Identities=18%  Similarity=0.204  Sum_probs=325.3

Q ss_pred             cHHHHHHHHHHcCCCCCceeeecccCC---CCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           43 TAWDIFSMSVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        43 ~l~~~l~~~a~~~p~~~al~~~~~~d~---~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ++.++|.+++..+|+++|+++.   +.   ..+..+.+||.||.+++.++|++|.+.| .+||+|+++++|++++++++|
T Consensus         2 s~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~l   77 (578)
T PRK05850          2 SVPSLLRERASLQPDDAAFTFI---DYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFL   77 (578)
T ss_pred             cHHHHHHHHHhcCCCceEEEEE---ccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHH
Confidence            6789999999999999999875   31   1223468999999999999999999999 689999999999999999999


Q ss_pred             HHHhcCCEEeeCCC---CCChhHHHHHHhhcCceEEEEcchhhhhhhcccccc-ccCccEEEEecCCchHHHHHHhhCCc
Q 008787          120 ACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS-AQRLRVMVCFTSLTAEQKEMAVQTGI  195 (553)
Q Consensus       120 A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (553)
                      ||+++|++++|+++   ..+.+++.+++++++++++++++.....+.+..... ......++.++..             
T Consensus        78 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  144 (578)
T PRK05850         78 GALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL-------------  144 (578)
T ss_pred             HHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc-------------
Confidence            99999999999987   456789999999999999999987665543221100 0011112211110             


Q ss_pred             eeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhh-ccccCCCCCCcEEEEecC
Q 008787          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL-DQFEDKMTVDDVYLSFLP  274 (553)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p  274 (553)
                         .   +..   ...........+++++++|||||||.||+|.+||++++..+....... .........++++++++|
T Consensus       145 ---~---~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  215 (578)
T PRK05850        145 ---D---LDS---PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLP  215 (578)
T ss_pred             ---c---ccc---CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECC
Confidence               0   000   000112234668999999999999999999999999988766543321 100001345789999999


Q ss_pred             hHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHH-HHHHHHHhhchHHHHHHHH
Q 008787          275 LAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHE-GIKKALEELRPLRRRIFDA  347 (553)
Q Consensus       275 ~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~-~~~~~~~~~~~~~~~~~~~  347 (553)
                      ++|.+|+.. .+.+++.|+++++.+.     ++..+++.+.+++++.. .+|..+..++. .....              
T Consensus       216 l~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~--------------  280 (578)
T PRK05850        216 FYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD--------------  280 (578)
T ss_pred             CCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh--------------
Confidence            999999875 6678999999988763     68999999999999855 56655443321 11000              


Q ss_pred             HHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC------CceEeeeccccCC
Q 008787          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETC  421 (553)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~i~~~YG~tE~g  421 (553)
                                          .....++        +++|.+++||+++++++.++|.+.|+      ..+++.||+||++
T Consensus       281 --------------------~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  332 (578)
T PRK05850        281 --------------------DMAGLDL--------GGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEAT  332 (578)
T ss_pred             --------------------hhcCcch--------hhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhh
Confidence                                0000111        37999999999999999999988763      3689999999987


Q ss_pred             CceeeccCCCc------------------------cccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccc
Q 008787          422 GPTTVCFPDEM------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS  477 (553)
Q Consensus       422 ~~~~~~~~~~~------------------------~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~  477 (553)
                      ..+........                        ....+.|.|. +.++++++ ++++ .+++.|+.|||+|+|++++.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd-~~~~-~~~~~g~~Gel~v~g~~~~~  409 (578)
T PRK05850        333 VYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVD-PDTC-IECPAGTVGEIWVHGDNVAA  409 (578)
T ss_pred             hheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEc-CCCC-cCCCCCCEEEEEEecCcccc
Confidence            65443221100                        0011334443 57899988 4433 45667899999999999999


Q ss_pred             cccCChhhhhhhcc------------CCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceE
Q 008787          478 GYYKNPDLTRESII------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDV  545 (553)
Q Consensus       478 gy~~~~~~~~~~~~------------~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~  545 (553)
                      ||+++++.+++.|.            +|||+|||+|+++ ||+|+++||.+|+|++ +|++|+|.|||++|.+||.+ +|
T Consensus       410 gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~~-~~  486 (578)
T PRK05850        410 GYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGRNHYPDDIEATIQEITGG-RV  486 (578)
T ss_pred             cccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCeecCHHHHHHHHHHhcCC-cE
Confidence            99999999998883            4799999999998 9999999999999997 89999999999999999995 48


Q ss_pred             EEEecCC
Q 008787          546 SISYSSV  552 (553)
Q Consensus       546 ~V~g~~~  552 (553)
                      +|+++++
T Consensus       487 ~v~~v~~  493 (578)
T PRK05850        487 AAISVPD  493 (578)
T ss_pred             EEEEecC
Confidence            8888764

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=3.5e-52  Score=427.19  Aligned_cols=389  Identities=25%  Similarity=0.323  Sum_probs=323.8

Q ss_pred             eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcc
Q 008787           78 TYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD  156 (553)
Q Consensus        78 Ty~el~~~v~~la~~L~~-~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~  156 (553)
                      ||.||.+.+.++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCc
Q 008787          157 KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPK  236 (553)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK  236 (553)
                      .....+.....       ..+.....                 +...................+++++++|||||||.||
T Consensus        81 ~~~~~~~~~~~-------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK  136 (408)
T TIGR01733        81 ALASRLAGLVL-------PIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK  136 (408)
T ss_pred             chhhhccccCC-------ceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence            76654422211       11111111                 0000000000011111145788999999999999999


Q ss_pred             eEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhc
Q 008787          237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELK  312 (553)
Q Consensus       237 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~  312 (553)
                      +|.+||+++...+..+...+     .+..++++++..|++|.+++..++.++..|+++++.+.    .+..+.+.+++++
T Consensus       137 ~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~  211 (408)
T TIGR01733       137 GVVVTHRSLVNLLAWLARRY-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHP  211 (408)
T ss_pred             EEEeccHHHHHHHHHHHHhc-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcC
Confidence            99999999999888877655     67788999999999999998888889999999998876    2688999999999


Q ss_pred             CcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcC
Q 008787          313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  392 (553)
Q Consensus       313 ~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG  392 (553)
                      +|.+.++|.+++.|.+...                                                ...+++|.+++||
T Consensus       212 ~t~l~~~p~~~~~l~~~~~------------------------------------------------~~~~~l~~v~~~g  243 (408)
T TIGR01733       212 VTVLNLTPSLLALLAAALP------------------------------------------------PALASLRLVILGG  243 (408)
T ss_pred             ceEEEeCHHHHHHHHHhhh------------------------------------------------hcccCceEEEEeC
Confidence            9999999999999875322                                                0114899999999


Q ss_pred             CCCCHHHHHHHHHhcC-CceEeeeccccCCCceeeccCCC--cc--ccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCe
Q 008787          393 APLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDE--MC--MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE  467 (553)
Q Consensus       393 ~~l~~~~~~~~~~~~~-~~i~~~YG~tE~g~~~~~~~~~~--~~--~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Ge  467 (553)
                      +++++++.+.+.+.++ ..+++.||+||+++++.......  ..  ...++|.|+++++++|++ +++  .++++|+.||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~--~~~~~g~~Ge  320 (408)
T TIGR01733       244 EALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DDL--RPVPVGVVGE  320 (408)
T ss_pred             ccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CCC--CCCCCCCceE
Confidence            9999999999999997 89999999999998775332221  11  157899999999999999 553  4556779999


Q ss_pred             EEEecCCccccccCChhhhhhhccC-------C--ccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhc
Q 008787          468 VCVRGKTLFSGYYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV  538 (553)
Q Consensus       468 i~v~~~~~~~gy~~~~~~~~~~~~~-------g--~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~  538 (553)
                      |+++|++++.||+++++.+.+.|..       |  ||+|||+|++|++|++++.||.+|+|++ +|++++|.+||++|..
T Consensus       321 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~  399 (408)
T TIGR01733       321 LYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIEAALLR  399 (408)
T ss_pred             EEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHHHHHhc
Confidence            9999999999999999999887722       2  9999999999999999999999999996 8999999999999999


Q ss_pred             CcCcceEEE
Q 008787          539 APIIEDVSI  547 (553)
Q Consensus       539 ~p~V~~~~V  547 (553)
                      ||.|.+|+|
T Consensus       400 ~~~v~~~~v  408 (408)
T TIGR01733       400 HPGVREAVV  408 (408)
T ss_pred             CcchhhhcC
Confidence            999999986

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.4e-51  Score=433.90  Aligned_cols=441  Identities=20%  Similarity=0.215  Sum_probs=344.6

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~  121 (553)
                      .++.++|.++++++|+++|+.+.    +     +.+||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||
T Consensus         3 ~~l~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~   73 (533)
T PRK07798          3 WNIADLFEAVADAVPDRVALVCG----D-----RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGA   73 (533)
T ss_pred             ccHHHHHHHHHHhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            37899999999999999999863    3     58999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHH
Q 008787          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (553)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (553)
                      +++|++++++++.++.+++.++++.+++++++++......+.+.. ...+....++.+++....      ....+.++++
T Consensus        74 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  146 (533)
T PRK07798         74 FKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVL-PRLPKLRTLVVVEDGSGN------DLLPGAVDYE  146 (533)
T ss_pred             HhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHh-ccCCCccEEEEecCCccc------ccCCccccHH
Confidence            999999999999999999999999999999999987666554432 223444555555543210      0011244677


Q ss_pred             HHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhcc----ccCCC------CCCcEEEE
Q 008787          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ----FEDKM------TVDDVYLS  271 (553)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~----~~~~~------~~~~~~~~  271 (553)
                      +++...... ..... ...+.++++|||||||.||+|+++|+++..........+..    ....+      ..+++++.
T Consensus       147 ~~~~~~~~~-~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (533)
T PRK07798        147 DALAAGSPE-RDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFP  224 (533)
T ss_pred             HHHhccCCc-CCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEE
Confidence            766543221 11112 23345789999999999999999999987655432221100    00011      46789999


Q ss_pred             ecChHHHHHHHHHHHHHHcCcEEEEec--C-ChHHHHHHhhhhcCcEEeechHHHHH-HHHHHHHHHHhhchHHHHHHHH
Q 008787          272 FLPLAHILDRVIEEYFFRRGASVGYYH--G-DLNALRDDLMELKPTLLAGVPRVFEK-IHEGIKKALEELRPLRRRIFDA  347 (553)
Q Consensus       272 ~~p~~~~~g~~~~~~~l~~g~~~~~~~--~-~~~~~~~~i~~~~~t~l~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~  347 (553)
                      .+|++|..++...+.++..|+++++.+  . ++..+++.++++++|.+.++|..+.. +.+.+. ..             
T Consensus       225 ~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~~-------------  290 (533)
T PRK07798        225 APPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-AR-------------  290 (533)
T ss_pred             ecchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-cc-------------
Confidence            999999999988888999999999988  4 89999999999999999999877643 322111 00             


Q ss_pred             HHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceee
Q 008787          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTV  426 (553)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~  426 (553)
                                                    ....++++|.+++||+++++++.+++++.+ +..+++.||+||++.....
T Consensus       291 ------------------------------~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~  340 (533)
T PRK07798        291 ------------------------------GPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSG  340 (533)
T ss_pred             ------------------------------ccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeeccccccccccc
Confidence                                          001124899999999999999999999988 7889999999999765554


Q ss_pred             ccCCCccccCccC--CCCCCeeEEEeecCCCCCCCCCCCCC--CeEEEecCCccccccCChhhhhhhcc--C--CccccC
Q 008787          427 CFPDEMCMVGTAG--PVSVYSELRLEEVPEMGYSPLDDPPC--GEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTG  498 (553)
Q Consensus       427 ~~~~~~~~~~~~G--~~~~~~~v~i~~~~~~~~~~~~~~~~--Gei~v~~~~~~~gy~~~~~~~~~~~~--~--g~~~TG  498 (553)
                      ......   ...|  .+.++..+++++ +++...  +.|+.  |+|+ +++.++.||++++..+++.|.  +  +||+||
T Consensus       341 ~~~~~~---~~~g~~~~~~~~~~~i~~-~~~~~~--~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TG  413 (533)
T PRK07798        341 TVAKGA---VHTGGPRFTIGPRTVVLD-EDGNPV--EPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPG  413 (533)
T ss_pred             CCCCCC---ccCCCCccCCCceEEEEC-CCCCCC--CCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcC
Confidence            322211   2233  788899999998 655533  34444  6665 566899999999999988873  3  499999


Q ss_pred             ceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       499 D~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |+|++|+||++++.||.+|+|+. +|++++|.+||++|.++|.|.+|+|+|.++
T Consensus       414 D~~~~~~~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~  466 (533)
T PRK07798        414 DRARVEADGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPD  466 (533)
T ss_pred             cEEEEcCCCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccC
Confidence            99999999999999999999996 899999999999999999999999999764

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.2e-51  Score=435.13  Aligned_cols=418  Identities=21%  Similarity=0.225  Sum_probs=331.6

Q ss_pred             eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEE
Q 008787           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (553)
Q Consensus        75 ~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~  154 (553)
                      +.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++++++..+.+++.++++.++++++++
T Consensus        10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhccccccccCccEEEEecCCchHHHHH-----HhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecC
Q 008787          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM-----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS  229 (553)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TS  229 (553)
                      +......+.+....    ...++............     .........+|+++.....    .......+++++++|||
T Consensus        90 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TS  161 (509)
T PRK12406         90 HADLLHGLASALPA----GVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTS  161 (509)
T ss_pred             ccchhhhhhhhhhc----ccceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECC
Confidence            88766544332211    11111111110000000     0001122345555543321    12234568999999999


Q ss_pred             CCCCCCceEEeccHhHHHHH---hhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC-ChHHHH
Q 008787          230 GTSGDPKGVVLTHETIATFV---SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALR  305 (553)
Q Consensus       230 GtTG~pK~v~~th~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~-~~~~~~  305 (553)
                      ||||.||+|.++|.+.....   ......+     ++..++++++.+|++|..+....+.++..|+++++.+. +++.++
T Consensus       162 GtTG~PK~v~~s~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  236 (509)
T PRK12406        162 GTTGHPKGVRRAAPTPEQAAAAEQMRALIY-----GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELL  236 (509)
T ss_pred             CCCCCCceEEEechhHHHHHHHHHhhhhhc-----CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHH
Confidence            99999999998776543332   2222233     56788999999999999887776677888999888765 899999


Q ss_pred             HHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCce
Q 008787          306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL  385 (553)
Q Consensus       306 ~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  385 (553)
                      +.++++++|++.++|+++..|++......                                   ..++        .+++
T Consensus       237 ~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------------------~~~~--------~~~l  273 (509)
T PRK12406        237 QLIERHRITHMHMVPTMFIRLLKLPEEVR-----------------------------------AKYD--------VSSL  273 (509)
T ss_pred             HHHHHcCCeEEEccHHHHHHHHhCchhhc-----------------------------------ccCC--------CCce
Confidence            99999999999999999998864211100                                   0011        1489


Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCC
Q 008787          386 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC  465 (553)
Q Consensus       386 r~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~  465 (553)
                      |.+++||+++++++.+++.+.++..+++.||+||++.+++.........++++|.+.++.++++++ +++  .+++.|+.
T Consensus       274 ~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~--~~~~~g~~  350 (509)
T PRK12406        274 RHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDG--RPLPQGEI  350 (509)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCC--CCCCCCCc
Confidence            999999999999999999999999999999999999876655444444557899999999999999 554  34556789


Q ss_pred             CeEEEecCCccc-cccCChhhhhhhccCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcce
Q 008787          466 GEVCVRGKTLFS-GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED  544 (553)
Q Consensus       466 Gei~v~~~~~~~-gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~  544 (553)
                      |||+++|+.++. +|++++..+...+.+|||+|||+|++++||++++.||.+|+|++ +|.+++|.+||++|.++|+|.+
T Consensus       351 Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~  429 (509)
T PRK12406        351 GEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHD  429 (509)
T ss_pred             eEEEEECCccccccccCCchhcccccCCCCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeE
Confidence            999999998875 89999988888778999999999999999999999999999996 8999999999999999999999


Q ss_pred             EEEEecCC
Q 008787          545 VSISYSSV  552 (553)
Q Consensus       545 ~~V~g~~~  552 (553)
                      |+|+|.++
T Consensus       430 ~~v~~~~~  437 (509)
T PRK12406        430 CAVFGIPD  437 (509)
T ss_pred             EEEEeeec
Confidence            99998765

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=1.8e-50  Score=450.67  Aligned_cols=465  Identities=19%  Similarity=0.262  Sum_probs=370.3

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      +...++.++|.+.++++|+++|+...   . ..+.++++||+|+.+++.++|.+|.++|+++||+|+|+++|+++|+++.
T Consensus       424 ~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~  499 (1452)
T PTZ00297        424 AGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILE  499 (1452)
T ss_pred             ccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            34469999999999999999999642   1 1244678999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHH-HHHHhhCCcee
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ-KEMAVQTGIKP  197 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  197 (553)
                      +||+++|++++|+++  +.+++.+++++++++++|++.+....+.+...   ..++.++++++..... .......+...
T Consensus       500 lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~Lr~IIv~d~~~~~~~~~~~~~~~i~~  574 (1452)
T PTZ00297        500 VACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RKLETVVYTHSFYDEDDHAVARDLNITL  574 (1452)
T ss_pred             HHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cCCcEEEEECCCcccccccccccCCcce
Confidence            999999999999975  46789999999999999999888776655432   3677888886421100 00000112346


Q ss_pred             eeHHHHHhccccccc-ccCCCCCCCeEEEEe---cCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEec
Q 008787          198 YSWDEFLHLGKVNEM-EILPPQPFNICTIMY---TSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (553)
Q Consensus       198 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~---TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (553)
                      ++|++++..+..... ......++|++.|+|   ||||||.||||++||+|++..+........  ......+|++++++
T Consensus       575 ~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~--~~~~~~~D~~Ls~L  652 (1452)
T PTZ00297        575 IPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGV--LPSSFKKHLMVHFT  652 (1452)
T ss_pred             eeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhcc--ccCCCCCCEEEEec
Confidence            789999887642111 122346788999986   999999999999999999999887643210  01245679999999


Q ss_pred             ChHHHHHHHHHHHHHHcCcEEEEecCChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 008787          274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (553)
Q Consensus       274 p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      |++|+++....+.+++.|+++..  .+++.+++.|++++||+++++|.+|+++.+.+.+.....+.+...+++++.+.+.
T Consensus       653 PLaHI~er~~~~~~l~~G~~I~~--~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~  730 (1452)
T PTZ00297        653 PFAMLFNRVFVLGLFAHGSAVAT--VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRS  730 (1452)
T ss_pred             hHHHHHHHHHHHHHHHcCCEEEe--CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            99999997767778899999864  3789999999999999999999999999998888888888899999999999887


Q ss_pred             HHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCC--CCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC
Q 008787          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA--PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (553)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~--~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~  431 (553)
                      ..+..+   .....+++++.|+++++.+|.++|.+++||+  +++..+..      +++++.+||.||..   +.+....
T Consensus       731 ~~~~~g---~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~~~~~~~  798 (1452)
T PTZ00297        731 RLINIH---RRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---FLPSEGV  798 (1452)
T ss_pred             HHHhcC---CCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---eecCCCC
Confidence            665543   2345688999999999999999999999984  55544433      67789999999942   3333333


Q ss_pred             ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEE
Q 008787          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI  511 (553)
Q Consensus       432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~  511 (553)
                      ..   ..|.|+|++++|+.++++.+..    +..|||++++       .++|+.|++. .+||+         +||+|+|
T Consensus       799 ~~---~~G~PlpgvEvKI~~~~E~~~~----~~~GEIlvr~-------~kdpe~T~e~-~~gW~---------~dG~L~I  854 (1452)
T PTZ00297        799 FC---VDGTPAPSLQVDLEPFDEPSDG----AGIGQLVLAK-------KGEPRRTLPI-AAQWK---------RDRTLRL  854 (1452)
T ss_pred             cc---cCCeecCceEEEEcccccccCC----CCCCeEEEEE-------CCChHHHHHh-hCcCc---------cCCeEEE
Confidence            22   2399999999999984443321    2369999964       4889988874 46775         6999999


Q ss_pred             EecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       512 ~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      .||.+|+|++++|++|.|..||+.+..+|.|.+++|+|++.
T Consensus       855 idRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~  895 (1452)
T PTZ00297        855 LGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPS  895 (1452)
T ss_pred             EeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCC
Confidence            99999999999999999999999999999999999999874

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.3e-51  Score=438.57  Aligned_cols=426  Identities=18%  Similarity=0.222  Sum_probs=335.2

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      |.++.+.|..++..+|+.+++...   ++    .+.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la   73 (545)
T PRK07768          1 MSRFTEKMYANARTSPRGMVTGEP---DA----PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQG   73 (545)
T ss_pred             CchHHHHHHHHhhCCCcceEEecC---CC----ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHH
Confidence            457889999999999999998765   43    26899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHH-------HHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhC
Q 008787          121 CNALSLICVPLYDTLGPGAV-------NFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l-------~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (553)
                      |+++|++++++++..+.+++       ..+++.++++.+++++........ ....                        
T Consensus        74 ~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~------------------------  128 (545)
T PRK07768         74 LWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPV-LEEK------------------------  128 (545)
T ss_pred             HHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhh-hccc------------------------
Confidence            99999999999988776544       456777899999988765432211 1000                        


Q ss_pred             CceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCC-cEEEEe
Q 008787          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVD-DVYLSF  272 (553)
Q Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~  272 (553)
                      ....++++++.....   .......++++++++|||||||.||+|+++|+++...+......+     ++..+ |++++.
T Consensus       129 ~~~~~~~~~l~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~d~~~~~  200 (545)
T PRK07768        129 GIRVLTVADLLAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-----EFDVETDVMVSW  200 (545)
T ss_pred             CCceeehhhhcccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-----CCCCCCceeEEe
Confidence            011334455443221   122344678999999999999999999999999998877665554     55655 899999


Q ss_pred             cChHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 008787          273 LPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (553)
Q Consensus       273 ~p~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (553)
                      +|++|.+++.. +..++..|++++++..     ++..+.+.+++++++++.++|..+..+.+.+.+....          
T Consensus       201 ~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------  270 (545)
T PRK07768        201 LPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP----------  270 (545)
T ss_pred             CCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc----------
Confidence            99999999875 5557899999888753     6788999999999999888777776655432111000          


Q ss_pred             HHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHh---cCC---ceEeeeccccC
Q 008787          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTET  420 (553)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~---~~~---~i~~~YG~tE~  420 (553)
                                             ...++        +++|.+++||+++++++.+++.+.   +|.   .+++.||+||+
T Consensus       271 -----------------------~~~~~--------~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~  319 (545)
T PRK07768        271 -----------------------GAFDL--------SSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEA  319 (545)
T ss_pred             -----------------------cCCCc--------hheeeEEeccCCCCHHHHHHHHHHHHhcCCCccccccccccccc
Confidence                                   00111        389999999999999999998774   555   49999999999


Q ss_pred             CCceeeccCCC-------------------------ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCc
Q 008787          421 CGPTTVCFPDE-------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL  475 (553)
Q Consensus       421 g~~~~~~~~~~-------------------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~  475 (553)
                      +..+.......                         .....++|+|++++++++++ +++.  ++++++.|||+++|+.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~--~~~~g~~Gel~v~~~~~  396 (545)
T PRK07768        320 TLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQ--VLPPRGVGVIELRGESV  396 (545)
T ss_pred             ceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCC--CCCCCCEEEEEEccCcc
Confidence            87554332210                         11235899999999999999 5554  45567899999999999


Q ss_pred             cccccCChhhhhhhccCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecC
Q 008787          476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSS  551 (553)
Q Consensus       476 ~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~  551 (553)
                      +.||++++........+|||+|||+|++++||+++++||.+|+|++ +|++++|.+||+.|.+||+|.+++|+|.+
T Consensus       397 ~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~  471 (545)
T PRK07768        397 TPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVRPGNAVAVR  471 (545)
T ss_pred             cccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEE-CCEecCHHHHHHHHHhCcccccceEEEEE
Confidence            9999986655444446889999999999999999999999999997 89999999999999999999998888754

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.2e-51  Score=430.42  Aligned_cols=414  Identities=21%  Similarity=0.243  Sum_probs=330.9

Q ss_pred             eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEE
Q 008787           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (553)
Q Consensus        75 ~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~  154 (553)
                      +.+||.||.+.+.++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++++
T Consensus        10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~   89 (502)
T PRK08276         10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV   89 (502)
T ss_pred             cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCC
Q 008787          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD  234 (553)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  234 (553)
                      +......+.+...........+.......           .....|.+......    .......++.++++|||||||.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG~  154 (502)
T PRK08276         90 SAALADTAAELAAELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP----DTPIADETAGADMLYSSGTTGR  154 (502)
T ss_pred             ccchhhHHHHHhhhccccccEEEEeCCCC-----------CccccHHHHHhcCC----CCCCCCCCcceEEEECCCCCCC
Confidence            98766554332211111334444432211           11234444433221    1112355678999999999999


Q ss_pred             CceEEeccHhHHHHHh--hchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC-ChHHHHHHhhhh
Q 008787          235 PKGVVLTHETIATFVS--GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMEL  311 (553)
Q Consensus       235 pK~v~~th~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~  311 (553)
                      ||+|.++|.++.....  ....... .......++++++..|++|.+++...+.++..|+++++.+. ++..+++.++++
T Consensus       155 PK~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~  233 (502)
T PRK08276        155 PKGIKRPLPGLDPDEAPGMMLALLG-FGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERY  233 (502)
T ss_pred             CceEEEccCCcchhhhhHHhhhhhh-hcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHh
Confidence            9999999877654322  1111110 00122467899999999999998887788999999988876 899999999999


Q ss_pred             cCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEc
Q 008787          312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG  391 (553)
Q Consensus       312 ~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~g  391 (553)
                      ++|++.++|+++..+++.....                                   .+.+++        +++|.+++|
T Consensus       234 ~~t~~~~~P~~~~~l~~~~~~~-----------------------------------~~~~~~--------~~lr~i~~~  270 (502)
T PRK08276        234 RVTHSQLVPTMFVRMLKLPEEV-----------------------------------RARYDV--------SSLRVAIHA  270 (502)
T ss_pred             CCeEEEehHHHHHHHHhCcccc-----------------------------------CCCCCc--------ccceEEEec
Confidence            9999999999998886421100                                   011112        389999999


Q ss_pred             CCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEe
Q 008787          392 GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR  471 (553)
Q Consensus       392 G~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~  471 (553)
                      |++++.++.+++.+.++..+++.||+||++.+++..........+++|.|+ +..+++++ +++.  +++.|+.|||+++
T Consensus       271 g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~--~~~~g~~Gel~v~  346 (502)
T PRK08276        271 AAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGN--ELPPGEIGTVYFE  346 (502)
T ss_pred             CCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCC--CCcCCCceEEEEE
Confidence            999999999999998899999999999999876665443334447899999 78999998 5543  4556789999999


Q ss_pred             cCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEec
Q 008787          472 GKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYS  550 (553)
Q Consensus       472 ~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~  550 (553)
                      |++++.||+++++.+...+ .+|||+|||+|+++++|.+++.||.+|+|++ +|.++++.+||.+|.+||+|.+|+|+|.
T Consensus       347 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~~  425 (502)
T PRK08276        347 MDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFGV  425 (502)
T ss_pred             CCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeC
Confidence            9999999999999999988 4599999999999999999999999999996 8999999999999999999999999987


Q ss_pred             CC
Q 008787          551 SV  552 (553)
Q Consensus       551 ~~  552 (553)
                      .+
T Consensus       426 ~~  427 (502)
T PRK08276        426 PD  427 (502)
T ss_pred             CC
Confidence            64

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=8.6e-52  Score=433.98  Aligned_cols=387  Identities=18%  Similarity=0.138  Sum_probs=286.5

Q ss_pred             eCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchh------hhhhhccccccccCccEEEEecC
Q 008787          108 GANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK------VKELLSPDCRSAQRLRVMVCFTS  181 (553)
Q Consensus       108 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  181 (553)
                      ++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++..      ...+.+... . .....++....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~   78 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVE-A-APAKAIVLPAA   78 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhh-c-ccceEEEEecc
Confidence            589999999999999999999999999999999999999999999998642      111111111 0 11122222111


Q ss_pred             CchHHHHHHhhCCceeeeHHHHHhcccc------cccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhh
Q 008787          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKV------NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF  255 (553)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~  255 (553)
                      ....    .........+|.+++.....      .........++++++|+|||||||.||+|++||.+++.........
T Consensus        79 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~  154 (499)
T PLN03051         79 GEPV----AVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH  154 (499)
T ss_pred             Cccc----CCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence            1000    00000112356665532110      0111112356899999999999999999999999987765443333


Q ss_pred             hccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHH
Q 008787          256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA  333 (553)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~  333 (553)
                      +     ++..+|++++.+|++|.+++...+.++..|+++++.+.  ++..+++.|+++++|++.++|+++..|++.... 
T Consensus       155 ~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~-  228 (499)
T PLN03051        155 M-----DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAF-  228 (499)
T ss_pred             c-----CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcc-
Confidence            3     57788999999999999997766778999999998864  788999999999999999999999988642100 


Q ss_pred             HHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc--CCce
Q 008787          334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFL  411 (553)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~~~i  411 (553)
                                                        .....++        ++||.+++||+++++++.+++++.+  +.++
T Consensus       229 ----------------------------------~~~~~~~--------~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~  266 (499)
T PLN03051        229 ----------------------------------AMEGLDW--------SKLRVFASTGEASAVDDVLWLSSVRGYYKPV  266 (499)
T ss_pred             ----------------------------------ccccCCc--------hhheEEEecCCCCCHHHHHHHHHhcccccee
Confidence                                              0000111        3899999999999999998887743  4789


Q ss_pred             EeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCc--cccccCChhhhhhh
Q 008787          412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL--FSGYYKNPDLTRES  489 (553)
Q Consensus       412 ~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~--~~gy~~~~~~~~~~  489 (553)
                      ++.||+||++..............+++|+|.++++++|+| +++...+.+.++.|||+++||.+  +.||++++ .+ +.
T Consensus       267 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~-~~  343 (499)
T PLN03051        267 IEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HD-KV  343 (499)
T ss_pred             EeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCc-cc-ce
Confidence            9999999987543332222222347899999999999999 66655544433689999999976  57999765 33 33


Q ss_pred             ccCC----------ccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhc-CcCcceEEEEecCC
Q 008787          490 IIDG----------WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV-APIIEDVSISYSSV  552 (553)
Q Consensus       490 ~~~g----------~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~-~p~V~~~~V~g~~~  552 (553)
                      +.+|          ||+|||+|++|+||+|+++||.+|+|++ +|++|+|.|||++|.+ ||+|.+|+|+|.++
T Consensus       344 ~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d  416 (499)
T PLN03051        344 YYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAP  416 (499)
T ss_pred             eeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecC
Confidence            4344          6899999999999999999999999996 8999999999999986 99999999999876

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=5.5e-51  Score=421.94  Aligned_cols=378  Identities=25%  Similarity=0.342  Sum_probs=315.5

Q ss_pred             eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcch
Q 008787           78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK  157 (553)
Q Consensus        78 Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~  157 (553)
                      ||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++++++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCce
Q 008787          158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKG  237 (553)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~  237 (553)
                      ......              .                  ...+..+................+++++++|||||||.||+
T Consensus        81 ~~~~~~--------------~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~  128 (436)
T TIGR01923        81 LEEKDF--------------Q------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA  128 (436)
T ss_pred             ccccce--------------e------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence            321100              0                  00111111111111111223456789999999999999999


Q ss_pred             EEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCChHHHHHHhhhhcCcEEe
Q 008787          238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA  317 (553)
Q Consensus       238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~i~~~~~t~l~  317 (553)
                      |.++|.++...+......+     ++..+|++++..|++|.+++...+.++..|+++++.+.. ..+++.++++++|++.
T Consensus       129 v~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~  202 (436)
T TIGR01923       129 VPHTFRNHYASAVGSKENL-----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHIS  202 (436)
T ss_pred             EEEehHHHHHHHHHHHhhc-----CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEE
Confidence            9999999998888776665     778899999999999999987777889999999888653 3899999999999999


Q ss_pred             echHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCH
Q 008787          318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST  397 (553)
Q Consensus       318 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~  397 (553)
                      ++|.++..+.+....                                                 ..++|.+++||+++++
T Consensus       203 ~~P~~l~~l~~~~~~-------------------------------------------------~~~l~~~~~~G~~~~~  233 (436)
T TIGR01923       203 LVPTQLNRLLDEGGH-------------------------------------------------NENLRKILLGGSAIPA  233 (436)
T ss_pred             eHHHHHHHHHhCcCC-------------------------------------------------CCceEEEEECCCCCCH
Confidence            999999887642100                                                 0279999999999999


Q ss_pred             HHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccc
Q 008787          398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS  477 (553)
Q Consensus       398 ~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~  477 (553)
                      ++.++++.. +.++++.||+||++...+...........++|.+++++++++.. ++.       ++.|||+++|+.++.
T Consensus       234 ~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~-------~~~Gel~v~~~~~~~  304 (436)
T TIGR01923       234 PLIEEAQQY-GLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKV-DNK-------EGHGEIMVKGANLMK  304 (436)
T ss_pred             HHHHHHHHh-CCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEe-CCC-------CCceEEEEECCccch
Confidence            999988764 99999999999998866654433322223589999999999854 222       167999999999999


Q ss_pred             cccCChhhhhhhccCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          478 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       478 gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ||+++++.+...+.+|||+|||+|++++||++++.||.+|+|++ +|+++++.+||++|.++|.|.+++|++...
T Consensus       305 gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~  378 (436)
T TIGR01923       305 GYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPD  378 (436)
T ss_pred             hhCCChhhhhhhhcCCCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcc
Confidence            99998888877778899999999999999999999999999997 899999999999999999999999998753

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.6e-51  Score=516.03  Aligned_cols=422  Identities=17%  Similarity=0.173  Sum_probs=350.3

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|.+.++++|+++|+++.   ++      .+||+||.++++++|+.|.++|+++|++|+|+++++++++++++|
T Consensus      3719 ~~~~~~~~~~~~~~~p~~~Av~~~---~~------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~la 3789 (4334)
T PRK05691       3719 EQSYVRLFEAQVAAHPQRIAASCL---DQ------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVG 3789 (4334)
T ss_pred             ccCHHHHHHHHHHhCCCceEEEcC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999976   43      799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccc-cCccEEEEecCCchHHHHHHhhCCceeee
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (553)
                      ++++|++++|++|.++.+++.++++++++++++++............... .....++..++.                 
T Consensus      3790 vlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 3852 (4334)
T PRK05691       3790 SFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEEV----------------- 3852 (4334)
T ss_pred             HHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeeccc-----------------
Confidence            99999999999999999999999999999999999876543221111000 001111111111                 


Q ss_pred             HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHH
Q 008787          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (553)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  279 (553)
                          .........+.....+++.++++|||||||.||||+++|+++++.+......+     ++..+++++...++.+..
T Consensus      3853 ----~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~fd~ 3923 (4334)
T PRK05691       3853 ----QAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-----ALSEADVIAQTASQSFDI 3923 (4334)
T ss_pred             ----ccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-----CCCccceEEEecCCchhH
Confidence                00010111222345678999999999999999999999999999988877666     788999999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 008787          280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (553)
Q Consensus       280 g~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (553)
                      +....+.++..|+++++++.    ++..+++.++++++|++..+|+++..++.....                       
T Consensus      3924 s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~----------------------- 3980 (4334)
T PRK05691       3924 SVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ----------------------- 3980 (4334)
T ss_pred             HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc-----------------------
Confidence            98888889999999998764    788999999999999999999999887532100                       


Q ss_pred             HhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCC---
Q 008787          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---  431 (553)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~---  431 (553)
                                               ..++||.+++||+++++++.+.|.+.+ ++++++.||+||++..++......   
T Consensus      3981 -------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~ 4035 (4334)
T PRK05691       3981 -------------------------ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLAST 4035 (4334)
T ss_pred             -------------------------cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccc
Confidence                                     013899999999999999999887765 788999999999988665443221   


Q ss_pred             ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-c-------CCccccCceEEE
Q 008787          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I-------DGWFHTGDIGQI  503 (553)
Q Consensus       432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~-------~g~~~TGD~g~~  503 (553)
                      ......+|+|+++.++.|+| +.+.  +++.|..|||+|+|+.+++||+++|+.|+++| .       ++||+|||+|++
T Consensus      4036 ~~~~~~iG~p~~~~~~~v~d-~~~~--~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~ 4112 (4334)
T PRK05691       4036 RGSYLPIGSPTDNNRLYLLD-EALE--LVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARR 4112 (4334)
T ss_pred             cCCcCCCCCccCCCEEEEEC-CCCC--CCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceee
Confidence            11224699999999999998 5444  45566899999999999999999999999998 2       359999999999


Q ss_pred             ccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEe
Q 008787          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISY  549 (553)
Q Consensus       504 ~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g  549 (553)
                      ++||.|+++||.|+.||+ +|++|.+.|||++|.++|+|.+|+|+.
T Consensus      4113 ~~dG~l~~~GR~d~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~ 4157 (4334)
T PRK05691       4113 RSDGVLEYVGRIDHQVKI-RGYRIELGEIEARLHEQAEVREAAVAV 4157 (4334)
T ss_pred             cCCCcEEEecccCCcEEe-ceEEecHHHHHHHHHhCCCccEEEEEE
Confidence            999999999999999998 799999999999999999999998864

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2.3e-51  Score=514.75  Aligned_cols=419  Identities=21%  Similarity=0.255  Sum_probs=350.4

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|.++++++|+++|+++.   +      ..+||+||.++++++|+.|++.|+++|++|+++++++.++++++||
T Consensus      1130 ~~~l~~~~~~~a~~~p~~~Al~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~la 1200 (4334)
T PRK05691       1130 QAWLPELLNEQARQTPERIALVWD---G------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLA 1200 (4334)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEEC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            467999999999999999999875   3      3799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      ++++|++++|+++..+.+++.++++++++++++++......+...     ... ..+.++...                .
T Consensus      1201 ilkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~-----~~~-~~~~~~~~~----------------~ 1258 (4334)
T PRK05691       1201 ILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA-----EGV-SAIALDSLH----------------L 1258 (4334)
T ss_pred             HHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc-----cCc-eEEeecccc----------------c
Confidence            999999999999999999999999999999999988765433111     011 111111110                0


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                      ..     .....+.....++++++++|||||||.||||+++|+++.+.+......+     ++..+++++...|+.|..+
T Consensus      1259 ~~-----~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~s 1328 (4334)
T PRK05691       1259 DS-----WPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-----ALDDSDVLMQKAPISFDVS 1328 (4334)
T ss_pred             cc-----cCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHH
Confidence            00     0011122234678999999999999999999999999999888766665     7889999999999999888


Q ss_pred             HHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (553)
Q Consensus       281 ~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (553)
                      +..++.++..|+++++.+.    ++..+++.++++++|++.++|+++..|.+....                        
T Consensus      1329 ~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~------------------------ 1384 (4334)
T PRK05691       1329 VWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA------------------------ 1384 (4334)
T ss_pred             HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc------------------------
Confidence            8778889999999999753    789999999999999999999999987541100                        


Q ss_pred             hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccC-CCccc
Q 008787          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-DEMCM  434 (553)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~-~~~~~  434 (553)
                                             ...++||.+++||+++++++.+.|.+.+ ++.+++.||+||++..++.... .....
T Consensus      1385 -----------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 1441 (4334)
T PRK05691       1385 -----------------------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGE 1441 (4334)
T ss_pred             -----------------------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCC
Confidence                                   0014899999999999999999998877 6889999999999876654321 22233


Q ss_pred             cCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhcc------C--CccccCceEEEccC
Q 008787          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------D--GWFHTGDIGQILPN  506 (553)
Q Consensus       435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~------~--g~~~TGD~g~~~~d  506 (553)
                      ..++|+|+++++++|+| +++  .+++.|+.|||+|+|+.+++||+++|+.+.+.|.      +  +||+|||+|++++|
T Consensus      1442 ~~~iG~p~~~~~~~i~d-~~~--~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~d 1518 (4334)
T PRK05691       1442 RSPIGRPLGNVLCRVLD-AEL--NLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNAD 1518 (4334)
T ss_pred             CCcccceeCCCEEEEEC-CCC--CCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCC
Confidence            46899999999999999 554  4456679999999999999999999999999882      1  39999999999999


Q ss_pred             CcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecC
Q 008787          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSS  551 (553)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~  551 (553)
                      |.++++||.|++||+ +|++|.|.|||++|.+||+|.+|+|++..
T Consensus      1519 G~l~~~GR~d~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~~ 1562 (4334)
T PRK05691       1519 GALEYLGRLDQQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVRE 1562 (4334)
T ss_pred             CCEEEecccCcEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEee
Confidence            999999999999998 79999999999999999999999999754

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-50  Score=453.41  Aligned_cols=431  Identities=14%  Similarity=0.131  Sum_probs=317.4

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      ....++.++|.++++++|+++|+++.    +     +.+||+||.++++++|+.|++.|+++||+|+|+++|++++++++
T Consensus       444 ~~~~sl~~ll~~~a~~~pd~~Al~~~----~-----~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~  514 (994)
T PRK07868        444 HTRISLGRIIAEQARDAPKGEFLLFD----G-----RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI  514 (994)
T ss_pred             CCCccHHHHHHHHHHHCCCCeEEEeC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            34568999999999999999999864    3     47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceee
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (553)
                      +||+++|++++|++|.   .++.++++.++++++|++......+...       ...+++++.........  .......
T Consensus       515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------~~~iiv~~~~~~~~~~~--~~~~~~~  582 (994)
T PRK07868        515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------PGRVLVLGGGESRDLDL--PDDADVI  582 (994)
T ss_pred             HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------CceEEEecCCccccccC--Ccchhhh
Confidence            9999999999999984   6799999999999999987766544221       12344443211000000  0000011


Q ss_pred             eHHHHHhcccccc--cccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChH
Q 008787          199 SWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (553)
Q Consensus       199 ~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  276 (553)
                      .++++.......+  ....+..++++++|+|| ||||.||++.++|.++..........+     .+..+|++++.+|++
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-----~l~~~d~~L~~~Pl~  656 (994)
T PRK07868        583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-----ALDRRDTVYCLTPLH  656 (994)
T ss_pred             hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-----CCCCCCeEEEecChH
Confidence            1111110000000  01112236889999999 577777887788877655443333333     677899999999999


Q ss_pred             HHHHHHHHHH-HHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 008787          277 HILDRVIEEY-FFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (553)
Q Consensus       277 ~~~g~~~~~~-~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (553)
                      |.+++...+. ++..|+++++.+. +++.+++.|+++++|+++++|+++..|++....                      
T Consensus       657 h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~----------------------  714 (994)
T PRK07868        657 HESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAF----------------------  714 (994)
T ss_pred             HHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCC----------------------
Confidence            9999976555 4555666666655 999999999999999999999999988642000                      


Q ss_pred             HHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC-CceEeeeccccCCCceeeccCCCcc
Q 008787          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMC  433 (553)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~i~~~YG~tE~g~~~~~~~~~~~~  433 (553)
                                     ...        ..+++|.++.  +.+++++.+.+.+.++ +++++.||+||++..... ..  ..
T Consensus       715 ---------------~~~--------~~~slr~~~g--~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~-~~--~~  766 (994)
T PRK07868        715 ---------------VLH--------GNHPVRLFIG--SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLAN-VS--GA  766 (994)
T ss_pred             ---------------ccC--------CCCceEEEec--CCCCHHHHHHHHHHhCchheeeeeecccccccccc-cC--CC
Confidence                           000        0137898763  3499999999999886 789999999998754432 21  12


Q ss_pred             ccCccCCCCCCe-eEEEeec---------CCCC-CCCCCCCCCCeEEEecCCccccccCChhhhhh--hc--cCCccccC
Q 008787          434 MVGTAGPVSVYS-ELRLEEV---------PEMG-YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE--SI--IDGWFHTG  498 (553)
Q Consensus       434 ~~~~~G~~~~~~-~v~i~~~---------~~~~-~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~--~~--~~g~~~TG  498 (553)
                      ..+++|+|+|++ ++++...         ++++ ...++.|+.|||+++++...     +|+.+..  .|  .+|||+||
T Consensus       767 ~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~~-----~p~~t~~~~~~~~~dgw~~TG  841 (994)
T PRK07868        767 KIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGPI-----DPTASVKRGVFAPADTWISTE  841 (994)
T ss_pred             CCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCCC-----ChhhhhHhcccccCCEEEecc
Confidence            347899999998 6776521         1122 13355689999999998532     3443322  24  37999999


Q ss_pred             ceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       499 D~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |+|++|+||+|+|+||.+|+|++ +|.+|+|.|||++|.+||.|.+|+|+|.++
T Consensus       842 Dlg~~d~dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d  894 (994)
T PRK07868        842 YLFRRDDDGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEV  894 (994)
T ss_pred             ceEEEcCCCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecC
Confidence            99999999999999999999996 788999999999999999999999999875

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-48  Score=378.48  Aligned_cols=439  Identities=19%  Similarity=0.185  Sum_probs=341.8

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ...++.+++...++++|+++|+++.   +.    .+++||+|+.+.++++|+.|+.+|++.||.|+++++|.++|+..+|
T Consensus        75 ~~~ti~~~F~~~vrr~p~k~aii~~---~~----~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWl  147 (649)
T KOG1179|consen   75 ERRTIAELFLSQVRRQPDKPAIIYE---GP----FQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWL  147 (649)
T ss_pred             cCCcHHHHHHHHHHhCCCccEEEEe---CC----CceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHH
Confidence            4589999999999999999999986   32    2589999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeee
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (553)
                      +++++|++.+.||++...+.|.|-++.++++++|++.+..+.+.+...........+...+....         ..+..+
T Consensus       148 GLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~---------~~g~~~  218 (649)
T KOG1179|consen  148 GLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSV---------PDGIES  218 (649)
T ss_pred             hHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCC---------CchHHH
Confidence            99999999999999999999999999999999999999888777764333222233333332221         111223


Q ss_pred             HHHHHhcccccc---cccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChH
Q 008787          200 WDEFLHLGKVNE---MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (553)
Q Consensus       200 ~~~l~~~~~~~~---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  276 (553)
                      +...++.....+   .......-.++++.+|||||||.||+.++||.-+...+..+...+     ++.++|+++..+|++
T Consensus       219 L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-----g~~~~DvvY~~lPLY  293 (649)
T KOG1179|consen  219 LLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-----GMTADDVVYTTLPLY  293 (649)
T ss_pred             HHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-----CCCccceEEEcchhH
Confidence            333333322222   122334677899999999999999999999999988888766666     899999999999999


Q ss_pred             HHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 008787          277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (553)
Q Consensus       277 ~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (553)
                      |+.|... ...++..|+|+++-.+ ++..+++.-.+|++|++...-.+.+-|+......-++.                 
T Consensus       294 Hsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~-----------------  356 (649)
T KOG1179|consen  294 HSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQ-----------------  356 (649)
T ss_pred             HHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcC-----------------
Confidence            9999887 5568999999999887 99999999999999999999998888875322211111                 


Q ss_pred             HHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCc-eEeeeccccCCCceeeccCCCcc
Q 008787          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFPDEMC  433 (553)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~-i~~~YG~tE~g~~~~~~~~~~~~  433 (553)
                                                  .++|..+  |.-+.++.++.|.++||.. |.+.||+||.... +.+.+... 
T Consensus       357 ----------------------------HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~-~~N~d~~v-  404 (649)
T KOG1179|consen  357 ----------------------------HKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSN-LVNYDGRV-  404 (649)
T ss_pred             ----------------------------ceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcce-eeeecCcc-
Confidence                                        3678777  6669999999999999876 9999999996544 33333221 


Q ss_pred             ccCccCC-------CCCCeeEEEeecC--------CCCCCCCCCCCCCeEEEe--cCCc---cccccCChhhhhhh----
Q 008787          434 MVGTAGP-------VSVYSELRLEEVP--------EMGYSPLDDPPCGEVCVR--GKTL---FSGYYKNPDLTRES----  489 (553)
Q Consensus       434 ~~~~~G~-------~~~~~~v~i~~~~--------~~~~~~~~~~~~Gei~v~--~~~~---~~gy~~~~~~~~~~----  489 (553)
                        +.+|+       ..|-.-+| +|+.        ++--.++++||.|.+.-+  ..+.   +.||.++.+.+++.    
T Consensus       405 --GA~G~~~~~~~~l~p~~LIk-~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rD  481 (649)
T KOG1179|consen  405 --GACGFMSRLLKLLYPFRLIK-VDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRD  481 (649)
T ss_pred             --ccccchhhhhhhccceEEEE-ecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHh
Confidence              33332       12222222 2211        122235678899966432  2233   78999977766553    


Q ss_pred             -cc--CCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          490 -II--DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       490 -~~--~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                       |.  |-||.|||+-.+|+.|+|||.+|..|.... +|++|+..|||++|....+++||.|+|+..
T Consensus       482 VFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~dv~VYGV~V  546 (649)
T KOG1179|consen  482 VFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQDVNVYGVTV  546 (649)
T ss_pred             hhccCcEEEeeCcEEEEecCCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccceeEEEEec
Confidence             43  349999999999999999999999999998 799999999999999999999999999864

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.2e-48  Score=396.87  Aligned_cols=341  Identities=14%  Similarity=0.116  Sum_probs=291.2

Q ss_pred             eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEE
Q 008787           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (553)
Q Consensus        75 ~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~  154 (553)
                      +++||.||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+++..+++.++++++++
T Consensus         7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~   85 (414)
T PRK08308          7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY   85 (414)
T ss_pred             ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence            48999999999999999985 68999999999999999999999999999999999999999999999999999999998


Q ss_pred             cchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCC
Q 008787          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD  234 (553)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  234 (553)
                      ++.....                                    ..              .....++++++++|||||||.
T Consensus        86 ~~~~~~~------------------------------------~~--------------~~~~~~~~~~~i~~TSGtTG~  115 (414)
T PRK08308         86 GESDFTK------------------------------------LE--------------AVNYLAEEPSLLQYSSGTTGE  115 (414)
T ss_pred             cCccccc------------------------------------cc--------------CCCCCCCCceEEEECCCCCCC
Confidence            7531100                                    00              001345788999999999999


Q ss_pred             CceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhc
Q 008787          235 PKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELK  312 (553)
Q Consensus       235 pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~  312 (553)
                      ||+|.+||+++...+..+...+     ....+++++..+|++|.+|+.. ++.++..|+++++.+. ++..+++.+++++
T Consensus       116 PKgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~  190 (414)
T PRK08308        116 PKLIRRSWTEIDREIEAYNEAL-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTP  190 (414)
T ss_pred             CcEEEEehHhHHHHHHHHHHhh-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhC
Confidence            9999999999998877766555     5677899999999999999865 6678999999988776 9999999999999


Q ss_pred             CcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcC
Q 008787          313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  392 (553)
Q Consensus       313 ~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG  392 (553)
                      +|+++++|.++..|.+....                                                 ..+++.+++||
T Consensus       191 ~t~~~~~P~~~~~l~~~~~~-------------------------------------------------~~~l~~~~~~G  221 (414)
T PRK08308        191 QHILYAVPLMLHILGRLLPG-------------------------------------------------TFQFHAVMTSG  221 (414)
T ss_pred             CeEEEcCHHHHHHHHhcCCc-------------------------------------------------cccccEEEEcc
Confidence            99999999999887642100                                                 02688899999


Q ss_pred             CCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEec
Q 008787          393 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG  472 (553)
Q Consensus       393 ~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~  472 (553)
                      +++++++.+.+++. +.++++.||+||++.+.... .  .....++|+|+|++++++.+ +        .++.|||++++
T Consensus       222 ~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~-~--~~~~~~~G~p~~~~~~~~~~-~--------~~~~gel~v~~  288 (414)
T PRK08308        222 TPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICP-D--MKSHLDLGNPLPHVSVSAGS-D--------ENAPEEIVVKM  288 (414)
T ss_pred             CCCCHHHHHHHHHh-CChhhhccCccccCCeeecC-C--CCCCCccCccCCCeEEEEec-C--------CCCCceEEEEc
Confidence            99999999999887 67899999999998644322 1  12336899999999999875 2        23579999975


Q ss_pred             CCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          473 KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       473 ~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      .                  ++||+|||+|++|+||++++.||.+|+|++ +|++++|.+||+++.++|+|.+|+|++.++
T Consensus       289 ~------------------~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~  349 (414)
T PRK08308        289 G------------------DKEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKD  349 (414)
T ss_pred             C------------------CceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccC
Confidence            2                  689999999999999999999999999997 899999999999999999999999998764

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1e-35  Score=322.50  Aligned_cols=409  Identities=22%  Similarity=0.255  Sum_probs=326.5

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.+.|...+.+.|+++|+...    +     ..+||.++..+++++|+.|.+.|+.+++.|+++.+.+.+++++++|
T Consensus       226 ~~~i~~~f~~~a~~~p~~~a~~~~----~-----~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~  296 (642)
T COG1020         226 RLTIHLLFEEQAATTPDAVALVRG----G-----QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLA  296 (642)
T ss_pred             cchHHHHHHHHHHhCCCceeEecC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHH
Confidence            378999999999999999888753    2     4799999999999999999999999999999999889999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      ++++|+..+|+++.++.+.+.++++.+++..+++..........        ... +..+...                +
T Consensus       297 ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~----------------~  351 (642)
T COG1020         297 VLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVG--------LPG-LALDDAL----------------S  351 (642)
T ss_pred             HHhcCCeEecCCCCChHHHHHHHHhhcCccEEEecccccccccc--------CCc-ccccccc----------------c
Confidence            99999999999999999999999999999999988332211100        000 1111100                0


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                          ......+. .....+++.++++|||||||.||||..+|+++.+........+     .....|+++...++.....
T Consensus       352 ----~~~~~~~~-~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-----~~~~~d~~l~~~s~~fD~~  421 (642)
T COG1020         352 ----EIPDTDPI-PQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-----GLDADDRVLALASLSFDAS  421 (642)
T ss_pred             ----cCCccCcc-cccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-----CCCcccEEeecCCcccchh
Confidence                00000000 1233568899999999999999999999999998666665555     7788889999999866666


Q ss_pred             HHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (553)
Q Consensus       281 ~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (553)
                      ....+.++..|+++++.+.    ++..+.+.+.++++|++..+|..+..+........ ...                  
T Consensus       422 ~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~-~~~------------------  482 (642)
T COG1020         422 VFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPD-LIS------------------  482 (642)
T ss_pred             HHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcc-ccC------------------
Confidence            6678889999999998875    89999999999999999999999988865300000 000                  


Q ss_pred             hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc--CCceEeeeccccCCCceeeccCCC-cc
Q 008787          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPTTVCFPDE-MC  433 (553)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~~~i~~~YG~tE~g~~~~~~~~~~-~~  433 (553)
                                              ..+.+|.+++||+.++.++...+....  ...+.+.||.||+........... ..
T Consensus       483 ------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~  538 (642)
T COG1020         483 ------------------------PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELE  538 (642)
T ss_pred             ------------------------CcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccC
Confidence                                    002489999999999999999877665  467999999999655444332222 11


Q ss_pred             ccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccC-CccccCceEEEccCCcEEEE
Q 008787          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKII  512 (553)
Q Consensus       434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~-g~~~TGD~g~~~~dG~l~~~  512 (553)
                      ....+|+|+++..+++.+ ...  .+++.+..||+++.|..+..||+++|+.+.+.|.. .+|+|||++++..||.+.++
T Consensus       539 ~~~piG~p~~n~~~~ild-~~~--~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~l  615 (642)
T COG1020         539 SRVPIGRPVANTQLYILD-QGL--RPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYL  615 (642)
T ss_pred             CCCCcceeeCCCeEEEEC-CCC--CcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEe
Confidence            136899999999999998 433  55556688999999999999999999999999955 49999999999999999999


Q ss_pred             ecccCceecCCceeecchhHHHHHhcCc
Q 008787          513 DRKKNLIKISQGEYVALEYLENVYCVAP  540 (553)
Q Consensus       513 GR~~d~i~~~~G~~~~~~~iE~~l~~~p  540 (553)
                      ||.|+.+|+ .|+++.+.+||..+.++|
T Consensus       616 gr~D~qvki-~g~Riel~eie~~l~~~~  642 (642)
T COG1020         616 GRKDSQVKI-RGFRIELGEIEAALAEQP  642 (642)
T ss_pred             ccccceeEe-ceEecCcHHHHHHHhcCC
Confidence            999999998 699999999999998875

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.1e-36  Score=304.12  Aligned_cols=254  Identities=25%  Similarity=0.326  Sum_probs=209.7

Q ss_pred             CCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEE
Q 008787          216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG  295 (553)
Q Consensus       216 ~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~  295 (553)
                      ...++++++++|||||||.||+|.++|.++..........+       ...++++..+|++|.+|+...+.++..|++++
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-------~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v  103 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL-------GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPV  103 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc-------CCCCeEEEECChHHHHHHHHHHHHHHcCCeEE
Confidence            34568999999999999999999999999988776544332       34568899999999999887778888999887


Q ss_pred             Eec----CChHHHHHHhhhhc--CcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHH
Q 008787          296 YYH----GDLNALRDDLMELK--PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  369 (553)
Q Consensus       296 ~~~----~~~~~~~~~i~~~~--~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (553)
                      +..    .++..+++.+++++  .++...+|..+..++.....                                     
T Consensus       104 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-------------------------------------  146 (358)
T PRK07824        104 ELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-------------------------------------  146 (358)
T ss_pred             ecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-------------------------------------
Confidence            732    28999999999998  45566678776655321000                                     


Q ss_pred             HHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCCCCeeEEE
Q 008787          370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL  449 (553)
Q Consensus       370 ~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i  449 (553)
                       .        ...+++|.+++||+++++++.+++.+. ++++++.||+||++..+           ...|.|++++++++
T Consensus       147 -~--------~~~~~l~~i~~gG~~l~~~~~~~~~~~-~~~v~~~YG~TE~~~~~-----------~~~G~~~~g~~v~i  205 (358)
T PRK07824        147 -T--------AALAELDAVLVGGGPAPAPVLDAAAAA-GINVVRTYGMSETSGGC-----------VYDGVPLDGVRVRV  205 (358)
T ss_pred             -c--------CCcccceEEEECCCCCCHHHHHHHHhc-CCcEEecccCCccCCCc-----------CcCceeCCCCEEEe
Confidence             0        001389999999999999999998864 99999999999987543           23588999999998


Q ss_pred             eecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEEEecccCceecCCceeec
Q 008787          450 EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA  528 (553)
Q Consensus       450 ~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~  528 (553)
                      .+              |||+++|+.++.||+++++..  .+ .+|||+|||+|++ ++|++++.||.+|+|++ +|++|+
T Consensus       206 ~~--------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~-~G~~v~  267 (358)
T PRK07824        206 ED--------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAIST-GGLTVL  267 (358)
T ss_pred             cC--------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEE-CCEEEC
Confidence            43              999999999999999988643  34 6789999999999 89999999999999997 899999


Q ss_pred             chhHHHHHhcCcCcceEEEEecCC
Q 008787          529 LEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       529 ~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |.+||++|.+||+|.+|+|+|.++
T Consensus       268 p~eIE~~l~~~~~V~~~~vv~~~~  291 (358)
T PRK07824        268 PQVVEAALATHPAVADCAVFGLPD  291 (358)
T ss_pred             HHHHHHHHHhCCCcceEEEEecCC
Confidence            999999999999999999999765

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=100.00  E-value=2.3e-31  Score=273.91  Aligned_cols=446  Identities=15%  Similarity=0.131  Sum_probs=316.8

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~-gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      .+|.++|+.++.++|+.+|+...   ++.+.+.+++||++|.+++.+++..|.+. -+++||.|++++++++|++++++|
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~  846 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA  846 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence            78999999999999999999987   77777779999999999999999999977 789999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCCh------hHHHHHHhhcCceEEEEcchhhhhhhccccccc---cCccEEEEecCCchHHHHHHh
Q 008787          121 CNALSLICVPLYDTLGP------GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA---QRLRVMVCFTSLTAEQKEMAV  191 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~------~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  191 (553)
                      |+.+|.+++|++|....      ..+..+++..++.+|+++.+....+.+......   ..+..+++.++...       
T Consensus       847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~-------  919 (1363)
T KOG3628|consen  847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPE-------  919 (1363)
T ss_pred             HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccch-------
Confidence            99999999999876533      458889999999999999887655543222111   11222233222211       


Q ss_pred             hCCceeeeHHHHHhcccc--cccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEE
Q 008787          192 QTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (553)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~  269 (553)
                             +|..-..+...  ...+..-.....+|++-+.--++|.--++.++|.++++.+...+..+     .+.....+
T Consensus       920 -------t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~-----~l~~~rpl  987 (1363)
T KOG3628|consen  920 -------TIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC-----QLYKSRPL  987 (1363)
T ss_pred             -------hhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH-----ccccCCce
Confidence                   11111111111  12223334677899999999999999999999999999999999988     67777778


Q ss_pred             EEecChHHHHHHH-HHHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHH
Q 008787          270 LSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (553)
Q Consensus       270 ~~~~p~~~~~g~~-~~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~  343 (553)
                      +...+.+.+.|+. +++..+++|.+.++++.     ++..|+..|+++++.-++.+-..++.+.+.+....+..+...  
T Consensus       988 ~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~g-- 1065 (1363)
T KOG3628|consen  988 LGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRG-- 1065 (1363)
T ss_pred             EEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhh--
Confidence            8888888888876 57788999999888764     899999999999999999999998888765554433222100  


Q ss_pred             HHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc---CCc---e------
Q 008787          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CAF---L------  411 (553)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~---~~~---i------  411 (553)
                                                  .+.         +...++..-+.....+.+-+.+.+   |..   +      
T Consensus      1066 ----------------------------nn~---------s~s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~ 1108 (1363)
T KOG3628|consen 1066 ----------------------------NNT---------SSSIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSS 1108 (1363)
T ss_pred             ----------------------------ccc---------ccceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccc
Confidence                                        000         112222223333333444343333   111   1      


Q ss_pred             -------EeeeccccCCCceeec---cCC----------CccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEe
Q 008787          412 -------VQGYGLTETCGPTTVC---FPD----------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR  471 (553)
Q Consensus       412 -------~~~YG~tE~g~~~~~~---~~~----------~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~  471 (553)
                             .+.|...|....-.-.   +.+          ........|...+++++.|++ ++. ..++.+|+.||||+.
T Consensus      1109 r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~Ivn-PEt-k~pc~dge~GEIW~~ 1186 (1363)
T KOG3628|consen 1109 RVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVN-PET-KGPCRDGELGEIWVN 1186 (1363)
T ss_pred             cCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeC-Ccc-ccccccCCcceEEec
Confidence                   2223222222110000   000          001113458888999999999 543 478889999999999


Q ss_pred             cCCccccccCChhh-hhhhc----------cCCccccCceEEEcc------C----CcEEEEecccCceecCCceeecch
Q 008787          472 GKTLFSGYYKNPDL-TRESI----------IDGWFHTGDIGQILP------N----GVVKIIDRKKNLIKISQGEYVALE  530 (553)
Q Consensus       472 ~~~~~~gy~~~~~~-~~~~~----------~~g~~~TGD~g~~~~------d----G~l~~~GR~~d~i~~~~G~~~~~~  530 (553)
                      |.+.+.+|+.-.+. ....|          ..+|.||||+|++..      +    .-||++|-.++.+.+ +|.+++|.
T Consensus      1187 S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~ 1265 (1363)
T KOG3628|consen 1187 SAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPS 1265 (1363)
T ss_pred             cccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCcc
Confidence            99998887753221 11111          134999999999842      2    358999999999998 79999999


Q ss_pred             hHHHHHh-cCcCcceEEEEecC
Q 008787          531 YLENVYC-VAPIIEDVSISYSS  551 (553)
Q Consensus       531 ~iE~~l~-~~p~V~~~~V~g~~  551 (553)
                      +||+.+. .||.|..|+||--+
T Consensus      1266 DIE~TV~~vH~~I~~cavF~~~ 1287 (1363)
T KOG3628|consen 1266 DIETTVERVHPSIGGCAVFQAT 1287 (1363)
T ss_pred             hHHHHHHHhcccccceeeEeeC
Confidence            9999995 69999999998643

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.97  E-value=9e-31  Score=262.02  Aligned_cols=232  Identities=17%  Similarity=0.158  Sum_probs=182.1

Q ss_pred             CCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCC--CCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEE
Q 008787          220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGY  296 (553)
Q Consensus       220 ~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~  296 (553)
                      +..++++|||||||.||+|.+||+++.+.+..+...+     ++  ...+++++.+|++|.+|+.+ .+.++..|+++++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~  169 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ  169 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence            3568999999999999999999999998887666554     34  33468999999999999864 5667888999988


Q ss_pred             ecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHH
Q 008787          297 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR  375 (553)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (553)
                      ... ++..+++.++.+  |+++++|.+++.|.+..    .                                        
T Consensus       170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~----------------------------------------  203 (386)
T TIGR02372       170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD----Y----------------------------------------  203 (386)
T ss_pred             cCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC----c----------------------------------------
Confidence            765 778888887654  89999999998875410    0                                        


Q ss_pred             HHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceEeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEeecCC
Q 008787          376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE  454 (553)
Q Consensus       376 ~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~  454 (553)
                           ..+++|. ++||+++++++.+.+++. +. .+++.||+||++++++....      ...|++.|+.++++ +  +
T Consensus       204 -----~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~~------~~~~~~~p~~~~~~-~--~  267 (386)
T TIGR02372       204 -----RLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREAP------DDPFRLLPDLACFA-D--T  267 (386)
T ss_pred             -----CCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccCC------CCCcccCCCccccC-C--C
Confidence                 0136775 678999999999999886 64 69999999999876554321      34567777766543 1  1


Q ss_pred             CCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHH
Q 008787          455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN  534 (553)
Q Consensus       455 ~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~  534 (553)
                      +.          +   .|+                  ..|++|||+|++|++|+|++.||.+|+|++ +|++|+|.+||+
T Consensus       268 ~~----------~---~g~------------------~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~  315 (386)
T TIGR02372       268 LS----------S---AGL------------------ARRLDLQDRLAWDKDGGFTILGRKDEILQV-GGVNVSPGHVRD  315 (386)
T ss_pred             cc----------C---CCc------------------cceeecCceEEEcCCCcEEEecccCCEEEE-CCEEEcHHHHHH
Confidence            10          0   011                  125899999999999999999999999997 899999999999


Q ss_pred             HHhcCcCcceEEEEec
Q 008787          535 VYCVAPIIEDVSISYS  550 (553)
Q Consensus       535 ~l~~~p~V~~~~V~g~  550 (553)
                      +|.+||+|.+|+|+..
T Consensus       316 ~l~~~p~V~~~~v~~~  331 (386)
T TIGR02372       316 ILERNPRVRAAAVRLD  331 (386)
T ss_pred             HHHcCCCceEEEEEcC
Confidence            9999999999998754

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.97  E-value=8e-31  Score=269.02  Aligned_cols=266  Identities=19%  Similarity=0.183  Sum_probs=197.0

Q ss_pred             CCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH-HHHHHHHHHcCcEEEE
Q 008787          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD-RVIEEYFFRRGASVGY  296 (553)
Q Consensus       218 ~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g-~~~~~~~l~~g~~~~~  296 (553)
                      ..++++.+++||||||.||++.+||.++..........+...  ++..+|++++..++.+..+ +...+.+...|++++.
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~--g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  150 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAA--GGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP  150 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHc--CCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence            456788899999999999999999999876644433322211  5677888887766544333 2234456778888877


Q ss_pred             ecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHH
Q 008787          297 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR  375 (553)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (553)
                      ++. +++.+++.|++++||+++++|+++..|++.+........                                     
T Consensus       151 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~-------------------------------------  193 (422)
T TIGR02155       151 ISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPA-------------------------------------  193 (422)
T ss_pred             cCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcc-------------------------------------
Confidence            654 789999999999999999999999998764332100000                                     


Q ss_pred             HHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCC-ceeeccCCCccccCccCCCC--CCeeEEEeec
Q 008787          376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG-PTTVCFPDEMCMVGTAGPVS--VYSELRLEEV  452 (553)
Q Consensus       376 ~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~-~~~~~~~~~~~~~~~~G~~~--~~~~v~i~~~  452 (553)
                            ..++|.+++||+++++++.+.+++.||+++++.||+||+++ ........     ...|.++  ++..++|+| 
T Consensus       194 ------~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~-----~~~g~~~~~~~~~~eivd-  261 (422)
T TIGR02155       194 ------QTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE-----TQDGLHIWEDHFYPEIID-  261 (422)
T ss_pred             ------cCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc-----cCCCceEecCeeEEEEEC-
Confidence                  02799999999999999999999999999999999999853 22221111     1123333  356677888 


Q ss_pred             CCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccC-C-----cEEEEecccCceecCCcee
Q 008787          453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-G-----VVKIIDRKKNLIKISQGEY  526 (553)
Q Consensus       453 ~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~d-G-----~l~~~GR~~d~i~~~~G~~  526 (553)
                      ++++ .++++|+.|||++++.            +...+..+||+|||+|+++++ |     .+++.||.+|+|++ .|.+
T Consensus       262 ~~~g-~~v~~Ge~Gelvvt~~------------~~~~~p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~-~G~~  327 (422)
T TIGR02155       262 PHTG-EVLPDGEEGELVFTTL------------TKEALPVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLII-RGVN  327 (422)
T ss_pred             CCCC-CCCCCCCeeEEEEecC------------CccccceeeEEcCcEEEEECCCCCcccccccccCccCCeEEE-CCEE
Confidence            4333 4557789999999974            223345789999999999875 4     47899999999997 7999


Q ss_pred             ecchhHHHHHhcCcCcceEEEE
Q 008787          527 VALEYLENVYCVAPIIEDVSIS  548 (553)
Q Consensus       527 ~~~~~iE~~l~~~p~V~~~~V~  548 (553)
                      |+|.+||++|.+||+|.....+
T Consensus       328 v~p~eie~~l~~~~~v~~~~q~  349 (422)
T TIGR02155       328 VFPTQLEEVILKMDELSPHYQL  349 (422)
T ss_pred             ECHHHHHHHHHhCcCcCCCEEE
Confidence            9999999999999999843333

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.94  E-value=1.7e-25  Score=229.76  Aligned_cols=252  Identities=19%  Similarity=0.166  Sum_probs=184.2

Q ss_pred             CCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEE
Q 008787          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGY  296 (553)
Q Consensus       218 ~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~  296 (553)
                      +.++++.+.+||||||.||++.+||.++..........+..  .++..+|+++...++.+..+... ...+...|++++.
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~--~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~  161 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVS--QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP  161 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHH--cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc
Confidence            45678899999999999999999999988766554433221  15778899998888877655443 4456777887643


Q ss_pred             ecCChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHH
Q 008787          297 YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRK  376 (553)
Q Consensus       297 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (553)
                       .+.....++.|++++++.+.++|+.+..|.+.+........                                      
T Consensus       162 -~~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~--------------------------------------  202 (445)
T TIGR03335       162 -EGKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPA--------------------------------------  202 (445)
T ss_pred             -CCchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcc--------------------------------------
Confidence             33455678999999999999999998887654332110000                                      


Q ss_pred             HHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCC--CCeeEEEeecCC
Q 008787          377 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS--VYSELRLEEVPE  454 (553)
Q Consensus       377 ~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~--~~~~v~i~~~~~  454 (553)
                           ..++|.+++||+++++++.+++++.||+++++.||+||++ ++..+..       ..|..+  +...+.|+| ++
T Consensus       203 -----~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~-~~~~c~~-------~~g~h~~~d~~~vEIvD-p~  268 (445)
T TIGR03335       203 -----ESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGT-MCGECQA-------VAGLHVPEDLVHLDVYD-PR  268 (445)
T ss_pred             -----cCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhh-heEEecC-------CCCccccCCceEEEEEc-CC
Confidence                 0279999999999999999999999999999999999986 3332211       123333  457788888 54


Q ss_pred             CCCCCCCCCCCCeEEEecCCcc-----ccccCChhhhhhhccCCccccCceEEEcc-C----C----cEEEEecccCcee
Q 008787          455 MGYSPLDDPPCGEVCVRGKTLF-----SGYYKNPDLTRESIIDGWFHTGDIGQILP-N----G----VVKIIDRKKNLIK  520 (553)
Q Consensus       455 ~~~~~~~~~~~Gei~v~~~~~~-----~gy~~~~~~~~~~~~~g~~~TGD~g~~~~-d----G----~l~~~GR~~d~i~  520 (553)
                      ++ .++++|+.|||++++-...     ...+             -|+|||++.+.. +    |    ++...||.+|+++
T Consensus       269 ~~-~~vp~Ge~GELvvT~L~~~~~r~~~Pli-------------RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~  334 (445)
T TIGR03335       269 HQ-RFLPDGECGRIVLTTLLKPGERCGSLLI-------------NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIW  334 (445)
T ss_pred             CC-CCCcCCCceEEEEEecCCCCccCCceEE-------------EeecCceEEEecCCCCCCCCCcceeCCCcccCceEE
Confidence            43 5667889999999875321     1111             289999998632 2    2    2445699999999


Q ss_pred             cCCceeecchhHHHHHhcC
Q 008787          521 ISQGEYVALEYLENVYCVA  539 (553)
Q Consensus       521 ~~~G~~~~~~~iE~~l~~~  539 (553)
                      + .|.+++|.+||++|.++
T Consensus       335 ~-~g~~~~p~~ie~~l~~~  352 (445)
T TIGR03335       335 I-SGVPFNRVDVERAVFQR  352 (445)
T ss_pred             E-CCEEeCHHHHHHHHhcc
Confidence            9 79999999999999984

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.93  E-value=1.4e-24  Score=201.25  Aligned_cols=221  Identities=15%  Similarity=0.036  Sum_probs=162.3

Q ss_pred             HHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHHHHhcCC
Q 008787           48 FSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSL  126 (553)
Q Consensus        48 l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~-~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~  126 (553)
                      |...++++|+++|+++.   ++.+++.+++||+||.+++.++|+.|++ .|+++||+|+++++|+++++++++||+++|+
T Consensus         2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~   78 (227)
T TIGR03089         2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV   78 (227)
T ss_pred             hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence            46778889999999864   3322123579999999999999999998 6999999999999999999999999999999


Q ss_pred             EEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecC--CchHHHHHHhhCCceeeeHHHHH
Q 008787          127 ICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS--LTAEQKEMAVQTGIKPYSWDEFL  204 (553)
Q Consensus       127 ~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~  204 (553)
                      +++|++             .++++++++++.....+. .     .  ..++.+..  ..... .  .....+..+|...+
T Consensus        79 v~vp~n-------------~s~a~~~v~~~~~~~~~~-~-----~--~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~  134 (227)
T TIGR03089        79 EVVLAG-------------DPDADVVVTGPDRLAAAA-G-----S--GEVVALSLDPLGRRV-A--GELPPGVIDFAPEV  134 (227)
T ss_pred             EEEeCC-------------CCCCCEEEeCcchhhhcc-c-----C--CceEEEeccccccCC-C--CCCCCcccchhhhh
Confidence            999995             678999999987766532 1     1  12222211  00000 0  00011234666655


Q ss_pred             hcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHH-
Q 008787          205 HLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-  283 (553)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-  283 (553)
                      ........+.....++|+++++||||+         +|.+++...    ..+     ++..+|+++ .+|++|.+|+.. 
T Consensus       135 ~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-----~l~~~D~~l-~~Pl~H~~gl~~~  195 (227)
T TIGR03089       135 RVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-----GLPPGDRVL-VLAWTDLEDFLAT  195 (227)
T ss_pred             hccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-----CCCCCCeEE-ecCCCchHHHHHH
Confidence            432222112213466899999999975         666665554    222     678899999 999999999975 


Q ss_pred             HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCc
Q 008787          284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPT  314 (553)
Q Consensus       284 ~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t  314 (553)
                      ++.++..|+++++.+. +++.+++.|+++|+|
T Consensus       196 ~~~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       196 LLAPLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             HHHHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            6678999999888876 999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.90  E-value=6.5e-22  Score=192.80  Aligned_cols=272  Identities=21%  Similarity=0.205  Sum_probs=199.6

Q ss_pred             cCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChH-HHHHHHHHHHHHHcCc
Q 008787          214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA-HILDRVIEEYFFRRGA  292 (553)
Q Consensus       214 ~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~g~~~~~~~l~~g~  292 (553)
                      ......++...|-.||||||+|+.+.+|+..+...+..+.+.+...  +...+|++....-+. +..|+.....+-..|+
T Consensus        84 ~~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~--g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~  161 (438)
T COG1541          84 DFAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSA--GVRKGDKVQNAYGYGLFTGGLGLHYGAERIGA  161 (438)
T ss_pred             cccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeeeccccCCchhHHHHHhhCE
Confidence            3344566777799999999999999999999988888877766433  567777765554421 2222333444445666


Q ss_pred             EEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHH
Q 008787          293 SVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL  371 (553)
Q Consensus       293 ~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (553)
                      +++-..+ +.+..++.|+.+++|++.++|+.+..|++.+.+....                                .+.
T Consensus       162 ~vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~--------------------------------~~~  209 (438)
T COG1541         162 TVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGID--------------------------------PDK  209 (438)
T ss_pred             EEEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCC--------------------------------hhh
Confidence            6554444 8999999999999999999999999999877665310                                000


Q ss_pred             HHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEee
Q 008787          372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEE  451 (553)
Q Consensus       372 ~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~  451 (553)
                                 .++|.+++|+++++++..+.+.+.||+..++.||+||..+.....+...    ......-+...+.++|
T Consensus       210 -----------~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~----~glhi~eD~~~~Ei~d  274 (438)
T COG1541         210 -----------LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTER----NGLHIWEDHFIFEIVD  274 (438)
T ss_pred             -----------cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCcccccccc----cCCCcchhhceeeeec
Confidence                       2899999999999999999999999999999999999977742222111    1111233456677788


Q ss_pred             cCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccC----Cc-----EEEEecccCceecC
Q 008787          452 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GV-----VKIIDRKKNLIKIS  522 (553)
Q Consensus       452 ~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~d----G~-----l~~~GR~~d~i~~~  522 (553)
                       |+.+ ..+++|+.|||+++.-+-  ..          +.==-|+|||+..+.++    |.     -.+.||.+|++++ 
T Consensus       275 -P~t~-e~l~dge~GelV~T~L~~--~~----------~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~-  339 (438)
T COG1541         275 -PETG-EQLPDGERGELVITTLTK--EG----------MPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIV-  339 (438)
T ss_pred             -CCcC-ccCCCCCeeEEEEEeccc--cC----------cceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEE-
Confidence             4433 566788999999987431  10          11113899999999763    32     4789999999998 


Q ss_pred             CceeecchhHHHHHhcCcCcc---eEEEEe
Q 008787          523 QGEYVALEYLENVYCVAPIIE---DVSISY  549 (553)
Q Consensus       523 ~G~~~~~~~iE~~l~~~p~V~---~~~V~g  549 (553)
                      .|.+|+|..||.+|.+.+.+.   +..+.+
T Consensus       340 ~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~  369 (438)
T COG1541         340 RGVNVFPSQIERVLLQIPEVTPHYQIILTR  369 (438)
T ss_pred             CCEEeCHHHHHHHHhcccCCCceEEEEEec
Confidence            599999999999999999998   555544

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.86  E-value=2e-20  Score=200.02  Aligned_cols=463  Identities=19%  Similarity=0.114  Sum_probs=275.8

Q ss_pred             ceeccccCCCCCCCC------CCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcC
Q 008787           24 VYRNLLASNGFPSVD------SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG   97 (553)
Q Consensus        24 ~~r~~~~~~~~~~~~------~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~g   97 (553)
                      -+++...-+.+|...      ..+.++...+.+.+...|+.++..+... ...++.....||......++.+++.|.+.|
T Consensus        12 ~~~~~~~~d~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~   90 (1032)
T KOG1178|consen   12 SLITYRQEDSLPDETKQIGFEQFMGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSLG   90 (1032)
T ss_pred             eeeccccccccCChhhhhhhhhhhcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhcc
Confidence            344444445555322      2356777788999999999998776432 334566678999999999999999999999


Q ss_pred             CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCC----hhHHH---HHHhhcCceEEEEcchhhhhhhccccccc
Q 008787           98 AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG----PGAVN---FILDHAEIDFVFVQDKKVKELLSPDCRSA  170 (553)
Q Consensus        98 l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~----~~~l~---~~l~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (553)
                      ...|+.|++++..+.++++..+++++.|..+++++|.++    ++.+.   +.+......+  ......-   ....+..
T Consensus        91 ~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i--~~~l~i~---~~~~~~~  165 (1032)
T KOG1178|consen   91 SLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEI--VRRLNII---DILLNSL  165 (1032)
T ss_pred             cccCceEEEeccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheecccee--hhhhhhH---HHHhhcc
Confidence            999999999999999999999999999999999999998    22111   1111111111  1111000   0000000


Q ss_pred             cCccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHh
Q 008787          171 QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS  250 (553)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~  250 (553)
                      .....+..                 ..-.+..+.....  .....-.-++..+++.||||+||.||+|..+|..+.+...
T Consensus       166 ~~~~sv~~-----------------~~~~f~~~~~~~~--~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fd  226 (1032)
T KOG1178|consen  166 FPKLSVET-----------------IADSFQMVLHNED--TREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFD  226 (1032)
T ss_pred             ccccchhh-----------------ccchhhhhhccCC--CcceeeecccccceEeecccccccccccchhHHHHHhhhh
Confidence            00000000                 0011222221111  1112233566688999999999999999999999999888


Q ss_pred             hchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHc-CcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHH
Q 008787          251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR-GASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEK  325 (553)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~-g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~  325 (553)
                      .....+     .....+++-.....+..-.......+++. |..+..+-.    ++..+...+.+++++....+|++.++
T Consensus       227 w~~~~f-----~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~  301 (1032)
T KOG1178|consen  227 WMFTTF-----PPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQL  301 (1032)
T ss_pred             hccccC-----CcCccchhhhhheeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhh
Confidence            766655     45555554111112111112234445444 444444322    48899999999999999999999888


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHH
Q 008787          326 IHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRV  405 (553)
Q Consensus       326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~  405 (553)
                      ++.........+.             ....++         .+...          .+.|+....+|++....+...+..
T Consensus       302 l~~~~~~~~~~l~-------------~~~~~~---------dl~~~----------~~~Lkl~~~~~ep~~v~l~~s~~~  349 (1032)
T KOG1178|consen  302 LLAILTTSLPLLE-------------HAFSLS---------DLLTK----------RSCLKLVVLGGEPLLVSLYTSTFD  349 (1032)
T ss_pred             hhhhcCcchhhhh-------------hhhhcc---------ccccc----------chhheeeeecCCccchhhhhhhhh
Confidence            7653322100000             000000         00000          037899999999999998885555


Q ss_pred             hc-CCceEeeeccccCCCceeeccCCCc---cccCccCCCCCC-------eeEEEeecCCCCC--CCCCCCCCCeEEEec
Q 008787          406 TC-CAFLVQGYGLTETCGPTTVCFPDEM---CMVGTAGPVSVY-------SELRLEEVPEMGY--SPLDDPPCGEVCVRG  472 (553)
Q Consensus       406 ~~-~~~i~~~YG~tE~g~~~~~~~~~~~---~~~~~~G~~~~~-------~~v~i~~~~~~~~--~~~~~~~~Gei~v~~  472 (553)
                      .+ -.-...-|++++..+......-...   -....++.+...       .-+.+.. ..+++  ..++.++.|..+..+
T Consensus       350 ~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~  428 (1032)
T KOG1178|consen  350 LLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLY-RAGGEGEGGVGKGCLGAEQNLS  428 (1032)
T ss_pred             cccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeee-ccCcccCCcccceeeccccccc
Confidence            44 1122333888887765553321110   000011111111       1111111 11111  111122233333334


Q ss_pred             CCccccccCChhhhhhhc--c----CCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEE
Q 008787          473 KTLFSGYYKNPDLTRESI--I----DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVS  546 (553)
Q Consensus       473 ~~~~~gy~~~~~~~~~~~--~----~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~  546 (553)
                      ..+..|| ..++.....+  .    +..|+|||+|+.-++|.+.++||.++.|++ +|.++...+|+.++..||.|.++.
T Consensus       429 ~~~~~g~-~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~~i  506 (1032)
T KOG1178|consen  429 SWVVDGY-STPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKEAI  506 (1032)
T ss_pred             ceeeccc-cchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhhhh
Confidence            4455552 3333222111  2    348999999988889999999999999998 799999999999999999999998


Q ss_pred             EEecC
Q 008787          547 ISYSS  551 (553)
Q Consensus       547 V~g~~  551 (553)
                      +.+.-
T Consensus       507 tl~~~  511 (1032)
T KOG1178|consen  507 TLARE  511 (1032)
T ss_pred             eeeee
Confidence            87653

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.82  E-value=7.1e-19  Score=182.54  Aligned_cols=446  Identities=15%  Similarity=0.115  Sum_probs=301.9

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEeCCc--hhHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVS-ALRASGAEPGCRVGIYGANC--PQWVEA  117 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~-~L~~~gl~~gd~V~l~~~n~--~~~~~~  117 (553)
                      +.++..+++++-.+++..+|.++.   |.++. ...+||..+..++.+.|+ .|.+.|+.++|+|.++...+  .++++.
T Consensus        93 ~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~is  168 (1363)
T KOG3628|consen   93 LTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLIS  168 (1363)
T ss_pred             hcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhh
Confidence            566778888888889999999998   66555 789999999999999999 67777999999999998776  899999


Q ss_pred             HHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCce-
Q 008787          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK-  196 (553)
Q Consensus       118 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  196 (553)
                      .++|..+|.+++|+.+..+.+++...++....++++..............+.            .......++...... 
T Consensus       169 l~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~------------s~~k~v~~w~t~~~k~  236 (1363)
T KOG3628|consen  169 LFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPV------------SLAKAVAWWKTNDFKG  236 (1363)
T ss_pred             hccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcc------------cHHHHHHhhhcccccc
Confidence            9999999999999999999999999999999999998877665543322100            001111111111111 


Q ss_pred             eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhcc---------------ccC
Q 008787          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ---------------FED  261 (553)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~---------------~~~  261 (553)
                      .+.+++         ...+..... ..+|-||.+++|.--+++++|. ++.+.+.+......               .-.
T Consensus       237 ~~~~~k---------~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~  305 (1363)
T KOG3628|consen  237 NYTKDK---------IKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVF  305 (1363)
T ss_pred             eeehhh---------ccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhcc
Confidence            122111         111222333 7899999999999999999998 65555544333211               011


Q ss_pred             CCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHh
Q 008787          262 KMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE  336 (553)
Q Consensus       262 ~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~  336 (553)
                      ..+..+.++....+....|+.+ .+.++++|.+...++.    .+..+.+.+.+++++++..-...+.+.......    
T Consensus       306 ~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~----  381 (1363)
T KOG3628|consen  306 PVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQE----  381 (1363)
T ss_pred             ccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccC----
Confidence            3456677788888888888876 6668999999888775    788999999999999999877776665432221    


Q ss_pred             hchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc----CC---
Q 008787          337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC----CA---  409 (553)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~----~~---  409 (553)
                                                   .+.. .+.+++-....++++|.+.+.-..+..+..+...+.+    |.   
T Consensus       382 -----------------------------~p~a-~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~  431 (1363)
T KOG3628|consen  382 -----------------------------DPKA-TLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNV  431 (1363)
T ss_pred             -----------------------------Cccc-ccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCc
Confidence                                         1100 0111112222336999999999888888766554433    21   


Q ss_pred             ---------------ceEeeeccccCCCceeeccCCCc-----------------------------cccCccCCCCCC-
Q 008787          410 ---------------FLVQGYGLTETCGPTTVCFPDEM-----------------------------CMVGTAGPVSVY-  444 (553)
Q Consensus       410 ---------------~i~~~YG~tE~g~~~~~~~~~~~-----------------------------~~~~~~G~~~~~-  444 (553)
                                     -....=++.|.+......+....                             .....+|...|| 
T Consensus       432 ~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~  511 (1363)
T KOG3628|consen  432 KVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGD  511 (1363)
T ss_pred             ceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccc
Confidence                           12222244566555444333100                             112234556666 


Q ss_pred             eeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhcc-------------CCccccCceEEEccCCcEEE
Q 008787          445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------------DGWFHTGDIGQILPNGVVKI  511 (553)
Q Consensus       445 ~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~-------------~g~~~TGD~g~~~~dG~l~~  511 (553)
                      +.+.++  +++....+.++++|||||.++....+|+.-+..+...|.             .-|.|||-+|+++ +|.+||
T Consensus       512 ~t~~vv--~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~v  588 (1363)
T KOG3628|consen  512 ATLAVV--NPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIYV  588 (1363)
T ss_pred             eEEEEe--CCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEEE
Confidence            333334  456667778889999999999999999987776666551             1289999999997 556666


Q ss_pred             EecccCceecCCceeecchh----------HHHHHhcCcCcceEEEEec
Q 008787          512 IDRKKNLIKISQGEYVALEY----------LENVYCVAPIIEDVSISYS  550 (553)
Q Consensus       512 ~GR~~d~i~~~~G~~~~~~~----------iE~~l~~~p~V~~~~V~g~  550 (553)
                      +|-.+|.+.--.|..++..+          |+-+.+..+.|.+++||-.
T Consensus       589 l~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~~  637 (1363)
T KOG3628|consen  589 LGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFED  637 (1363)
T ss_pred             EEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeeec
Confidence            66666665422355544333          4555577899999988753

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.66  E-value=1.8e-14  Score=144.76  Aligned_cols=243  Identities=16%  Similarity=0.156  Sum_probs=156.0

Q ss_pred             EEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEe--cChHHHHHHHHHHHHHHc-CcEEEEec-
Q 008787          223 CTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF--LPLAHILDRVIEEYFFRR-GASVGYYH-  298 (553)
Q Consensus       223 ~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~g~~~~~~~l~~-g~~~~~~~-  298 (553)
                      ..+..||||||.|-.+..+..................  ++..++++...  .+. +.+..      +.. ...+..++ 
T Consensus       102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~--g~~~g~r~a~~~~~~~-~ly~~------~~~~~~~~~~~~l  172 (430)
T TIGR02304       102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPD--GLFAKHRIAFFLRADN-NLYQS------VNNRWISLDFFDL  172 (430)
T ss_pred             EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCcc--ccccCCcEEEEEccCh-hHHHH------HHhccceeeecCC
Confidence            4567899999999999999987755444333222111  34444444333  222 11111      111 11122222 


Q ss_pred             -CChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHH
Q 008787          299 -GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV  377 (553)
Q Consensus       299 -~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (553)
                       .+.+.+++.|++++|+++.++|+.+..|++.+.....  .                                       
T Consensus       173 ~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l--~---------------------------------------  211 (430)
T TIGR02304       173 LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL--T---------------------------------------  211 (430)
T ss_pred             CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC--C---------------------------------------
Confidence             3789999999999999999999999999875543210  0                                       


Q ss_pred             HHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCCCCe--eEEEeecCCC
Q 008787          378 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS--ELRLEEVPEM  455 (553)
Q Consensus       378 ~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~--~v~i~~~~~~  455 (553)
                           .+++.++++|+.++++..+.+++.||+++++.||+|| |.+++.+..+.      .....+.+  |..++| +++
T Consensus       212 -----~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~g~------lHl~ed~~~vE~~ivD-~~~  278 (430)
T TIGR02304       212 -----IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRCGT------LHLNEDLVHIEKQYLD-EHK  278 (430)
T ss_pred             -----CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCCCC------EEEccccEEEEeeEEC-CCC
Confidence                 1689999999999999999999999999999999999 66655553221      11111122  222556 322


Q ss_pred             CCCCCCCCCCCeEEEecCCc-cccccCChhhhhhhccCCccccCceEEEccC----Cc----E-EEEecccCceec--CC
Q 008787          456 GYSPLDDPPCGEVCVRGKTL-FSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GV----V-KIIDRKKNLIKI--SQ  523 (553)
Q Consensus       456 ~~~~~~~~~~Gei~v~~~~~-~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~d----G~----l-~~~GR~~d~i~~--~~  523 (553)
                               .+..+|++-.. +...+             -|+|||++.+.++    |.    | .+.||.+|++++  .+
T Consensus       279 ---------~~~~ViT~L~n~~~PlI-------------RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~  336 (430)
T TIGR02304       279 ---------RFVPIITDFTRTTQPIV-------------RYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRS  336 (430)
T ss_pred             ---------ceEEEEecCCCccceEE-------------eeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCC
Confidence                     13445554211 11111             2899999988543    32    3 488999999984  34


Q ss_pred             cee--ecchhHHHHH-hcCcCcceEEEEec
Q 008787          524 GEY--VALEYLENVY-CVAPIIEDVSISYS  550 (553)
Q Consensus       524 G~~--~~~~~iE~~l-~~~p~V~~~~V~g~  550 (553)
                      |..  ++|..++.+| ...++|.+.-|+..
T Consensus       337 G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~  366 (430)
T TIGR02304       337 GDEQTVFPDFIRRVILFTLPLIVEYRVLQT  366 (430)
T ss_pred             CCeEEeCHHHHHHHHHhcCCCCceEEEEEc
Confidence            555  4888899885 46789988877653

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.19  E-value=2e-11  Score=120.07  Aligned_cols=56  Identities=21%  Similarity=0.298  Sum_probs=52.2

Q ss_pred             ccCCccccCceEEE-ccCCcEEEEecccCceecCCc---eeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          490 IIDGWFHTGDIGQI-LPNGVVKIIDRKKNLIKISQG---EYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       490 ~~~g~~~TGD~g~~-~~dG~l~~~GR~~d~i~~~~G---~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +.||||+|||+|++ |+||+|+|+||.+      +|   ++|+|. ||++|.+||+|.||+|+|+++
T Consensus       206 ~~dgW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd  265 (365)
T PRK09188        206 PSRIWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSL  265 (365)
T ss_pred             ccCcEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEc
Confidence            46899999999998 7999999999997      57   799999 999999999999999999876

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=99.12  E-value=1.2e-08  Score=100.66  Aligned_cols=237  Identities=18%  Similarity=0.196  Sum_probs=141.2

Q ss_pred             CCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHH---HHHH--HHHHHHHcCc
Q 008787          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI---LDRV--IEEYFFRRGA  292 (553)
Q Consensus       218 ~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~g~~--~~~~~l~~g~  292 (553)
                      ..+++...+.||||||.+--+.+.+..+......+...+..........-.++...|-...   .+..  ........+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            4556778899999999987777777666666655554443221111122233444443211   1111  1222333455


Q ss_pred             EEEEecC--ChHHHHHHhh----hhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcc
Q 008787          293 SVGYYHG--DLNALRDDLM----ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS  366 (553)
Q Consensus       293 ~~~~~~~--~~~~~~~~i~----~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (553)
                      ...+-..  +.+.++..+.    ..++..+++.|.++..+++.+++......                            
T Consensus       167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~----------------------------  218 (365)
T PF04443_consen  167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFR----------------------------  218 (365)
T ss_pred             eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCccc----------------------------
Confidence            5333222  5666665554    56788899999888877765544422111                            


Q ss_pred             hHHHHHHHHHHHHHhCCceeEEEEcC------CCCCH-HHHHHHHHhcCC----ceEeeeccccCCCceeeccCCCcccc
Q 008787          367 PLADLLAFRKVKARLGGRLRLVISGG------APLST-EVEEFLRVTCCA----FLVQGYGLTETCGPTTVCFPDEMCMV  435 (553)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~lr~i~~gG------~~l~~-~~~~~~~~~~~~----~i~~~YG~tE~g~~~~~~~~~~~~~~  435 (553)
                                    +.+..+.+..||      +.+++ +..+.+++.||+    .+++.||+||.....+.+....    
T Consensus       219 --------------L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~----  280 (365)
T PF04443_consen  219 --------------LPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGH----  280 (365)
T ss_pred             --------------CCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCCc----
Confidence                          002345555565      44654 567778888888    5999999999877666552211    


Q ss_pred             CccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccC--------C
Q 008787          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN--------G  507 (553)
Q Consensus       436 ~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~d--------G  507 (553)
                          .++|-. +.+.| + .+..+++.|+.|-|.+-++... .|            -+..-|.|+|.+..+        .
T Consensus       281 ----~~~p~w-V~iRD-p-~tl~~~~~Ge~Gli~vidl~~~-s~------------p~~IlTeDlGvl~~~~~c~cr~g~  340 (365)
T PF04443_consen  281 ----FHVPPW-VIIRD-P-ETLEPLPPGETGLIQVIDLANT-SY------------PGFILTEDLGVLHGDDDCGCRKGK  340 (365)
T ss_pred             ----ccCCCe-EEEEC-C-CCCcCCCCCCeeEEEEEccccc-CC------------CcEEEEcceeeecCCCCCCCccCC
Confidence                122222 55556 4 3467888899999998776433 12            233679999988654        2


Q ss_pred             cEEEEecccCcee
Q 008787          508 VVKIIDRKKNLIK  520 (553)
Q Consensus       508 ~l~~~GR~~d~i~  520 (553)
                      ++.++||.+..=.
T Consensus       341 ~f~vlGR~~~ae~  353 (365)
T PF04443_consen  341 YFEVLGRADGAEI  353 (365)
T ss_pred             EEEEEeCCCCCcc
Confidence            7999999886543

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.27  E-value=4.8e-06  Score=87.10  Aligned_cols=145  Identities=19%  Similarity=0.238  Sum_probs=81.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHHhcCC--ceEeeeccccCCCceeeccCCCccccCccCCCCCCee-EEEeecCCCC---
Q 008787          383 GRLRLVISGGAPLSTEVEEFLRVTCCA--FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE-LRLEEVPEMG---  456 (553)
Q Consensus       383 ~~lr~i~~gG~~l~~~~~~~~~~~~~~--~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~-v~i~~~~~~~---  456 (553)
                      ++|+++.+-+..-.......+++.++-  .+...|++||+ .++....++.     ..+.+.++.. ...++.++..   
T Consensus       267 P~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg-~i~i~~~~~~-----~~~~l~~~~~ffEFip~~~~~~~~  340 (528)
T PF03321_consen  267 PNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEG-FIGIPLDPED-----PGYVLAPDSGFFEFIPVDEDEQNP  340 (528)
T ss_dssp             TT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTE-EEEEES-CCC-------EEE-TTSSEEEEEE-STT----
T ss_pred             CCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccce-EEEEecCCCC-----CceEeecCCeEEEEEeccCCcccc
Confidence            689977776655555667777777753  35579999994 3333322211     1122222222 2233322211   


Q ss_pred             ---CC-----CCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEcc--CC--cEEEEecccCceecCCc
Q 008787          457 ---YS-----PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP--NG--VVKIIDRKKNLIKISQG  524 (553)
Q Consensus       457 ---~~-----~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~--dG--~l~~~GR~~d~i~~~~G  524 (553)
                         ..     .+..|+..||+|+..   .|.|+             |+.||+.++..  ++  .+.|+||.+.++.+ .|
T Consensus       341 ~~~~~~l~~~ele~G~~YelviTt~---~GLyR-------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l-~g  403 (528)
T PF03321_consen  341 SEQPKTLLLHELEVGEEYELVITTN---SGLYR-------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL-FG  403 (528)
T ss_dssp             ---SSSEEGGG--TT-EEEEEEEST---TS-SS-------------EEECEEEEEEEEETTEEEEEEEEETTEEE-S-SS
T ss_pred             cCCCceecHHHhcCCCeEEEEEecc---cceee-------------eecCCEEEEeeccCCCcEEEEeccCCceeec-ce
Confidence               11     122456677888764   34443             89999999852  45  79999999999998 79


Q ss_pred             eeecchhHHHHHhcC-----cCcceEEEEec
Q 008787          525 EYVALEYLENVYCVA-----PIIEDVSISYS  550 (553)
Q Consensus       525 ~~~~~~~iE~~l~~~-----p~V~~~~V~g~  550 (553)
                      ++++..+|+++|.+.     -.+.+..+...
T Consensus       404 Ekl~e~~v~~av~~~~~~~~~~~~~f~~~~~  434 (528)
T PF03321_consen  404 EKLSEEQVQEAVARALQETGLELRDFTVAPD  434 (528)
T ss_dssp             --EEHHHHHHHHHHHHHCTT-EEEEEEEEEE
T ss_pred             eecCHHHHHHHHHHHHHhcCCceeeEEEEee
Confidence            999999999999754     34556555544

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.94  E-value=0.0013  Score=68.69  Aligned_cols=141  Identities=14%  Similarity=0.057  Sum_probs=83.5

Q ss_pred             HHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceE-eeeccccCCCceeeccCCCccccCccCCCCCCeeE-EEeecCCC
Q 008787          379 ARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL-RLEEVPEM  455 (553)
Q Consensus       379 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~-~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v-~i~~~~~~  455 (553)
                      .++=+++++|.+-..--.......++..+ |+++. ..|++||+ .+ ..+...........+...|+... ..++.+++
T Consensus       289 ~rLWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~-~~-ginl~p~~~p~~~sy~L~p~~~yFEFip~~~~  366 (606)
T PLN02247        289 KRLWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSEC-YF-GINLKPLSDPSDVSYTLLPNMAYFEFLPVDKN  366 (606)
T ss_pred             HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccce-EE-EeccCcCCCccCCceeecCCcEEEEEeecCCC
Confidence            34448999998865555666667777666 55544 49999994 22 32221111110112233343322 12221111


Q ss_pred             C------------------------CC---CCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEc----
Q 008787          456 G------------------------YS---PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL----  504 (553)
Q Consensus       456 ~------------------------~~---~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~----  504 (553)
                      .                        .+   .+..|+.-||+|+..   .|.|+             ||.||+.++.    
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt~---~GLYR-------------YrlGDvv~V~GF~n  430 (606)
T PLN02247        367 NGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTF---TGLYR-------------YRVGDILMVTGFYN  430 (606)
T ss_pred             cccccccccccccccccccccccCceecHHHccCCCeEEEEEEec---CceEE-------------EecCCEEEEeeecC
Confidence            1                        00   122456677877652   33332             8999998874    


Q ss_pred             cCCcEEEEecccCceecCCceeecchhHHHHHhc
Q 008787          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV  538 (553)
Q Consensus       505 ~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~  538 (553)
                      ..-.|.|++|.+.+..+ .|+|.+-.++-.++.+
T Consensus       431 ~~P~~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~  463 (606)
T PLN02247        431 NAPQFRFVQRRNVVLSI-DTDKTNEEDLLKAVTQ  463 (606)
T ss_pred             CCceEEEEecCCceeec-ccccCCHHHHHHHHHH
Confidence            23469999999999998 7999999999888854

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.88  E-value=0.00024  Score=74.79  Aligned_cols=136  Identities=15%  Similarity=0.142  Sum_probs=77.7

Q ss_pred             HhCCc---eeEEEEcCCCCCHHHHHHHHHhc-CC-ceEeeeccccCCCceeeccCCCccccCccC-CCCC-CeeEEEeec
Q 008787          380 RLGGR---LRLVISGGAPLSTEVEEFLRVTC-CA-FLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV-YSELRLEEV  452 (553)
Q Consensus       380 ~~~~~---lr~i~~gG~~l~~~~~~~~~~~~-~~-~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G-~~~~-~~~v~i~~~  452 (553)
                      ++=++   +..+.+||..   .-...++..+ +. .+...|++||+ .++....+..  .+...+ ..++ +.-...++.
T Consensus       299 ~lWPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg-~~gi~~~~~~--~p~~~~~~l~~~~~ffEFiP~  372 (597)
T PLN02249        299 KIWPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSES-YFGINLNPMC--KPSEVSYTIMPNMAYFEFLPH  372 (597)
T ss_pred             HhCCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccce-EEEeecCCCC--CCCCcceEecCCcEEEEeeec
Confidence            33367   5555566644   4555666665 33 36779999994 3333221110  001111 1112 222233321


Q ss_pred             CCCC--------CC---CCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccC----CcEEEEecccC
Q 008787          453 PEMG--------YS---PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GVVKIIDRKKN  517 (553)
Q Consensus       453 ~~~~--------~~---~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~d----G~l~~~GR~~d  517 (553)
                      ++.+        ..   .+..|+.-|++|+..   .|.|+             |+.||+.++..-    =.|.|+||.+.
T Consensus       373 ~~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT~---~GLyR-------------Y~iGDvVrvtgf~~~~P~i~F~gR~~~  436 (597)
T PLN02249        373 NHDGDGALDETSLVELADVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFKFIRRKNV  436 (597)
T ss_pred             ccCCcccCCCCcEecHHHcCCCCeEEEEEEcc---cceeE-------------eecCCEEEEeeccCCCcEEEEEccCCc
Confidence            1111        11   122345667777652   33332             899999998532    36899999999


Q ss_pred             ceecCCceeecchhHHHHHhc
Q 008787          518 LIKISQGEYVALEYLENVYCV  538 (553)
Q Consensus       518 ~i~~~~G~~~~~~~iE~~l~~  538 (553)
                      ++.+ .|+++...+++.+|.+
T Consensus       437 ~ls~-~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        437 LLSI-ESDKTDEADLQKAVEN  456 (597)
T ss_pred             ceec-ccccCCHHHHHHHHHH
Confidence            9997 7999999999998865

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.82  E-value=0.004  Score=65.07  Aligned_cols=141  Identities=15%  Similarity=0.017  Sum_probs=82.8

Q ss_pred             HHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCc-eEeeeccccCCCceeeccCCCccccCccCCCCCCeeEE-EeecCC-
Q 008787          379 ARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAF-LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR-LEEVPE-  454 (553)
Q Consensus       379 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~-i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~-i~~~~~-  454 (553)
                      .++=+++++|.+-...-.......++..+ |++ +-..|++||+ .+...-.+.. ......+...|+...- .+++++ 
T Consensus       300 ~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~-~~ginl~P~~-~p~~~sy~L~p~~~yFEFip~~~~  377 (612)
T PLN02620        300 TRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSEC-YFGVNLNPLC-KPSEVSYTLIPTMAYFEFLPVHRN  377 (612)
T ss_pred             HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccce-EEEeccCCCC-CcccceeeecCCcEEEEEeeccCc
Confidence            44448999988865555555666666665 565 4559999994 3322211111 1101122333333221 221111 


Q ss_pred             CC------------------CC---CCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEc----cCCcE
Q 008787          455 MG------------------YS---PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL----PNGVV  509 (553)
Q Consensus       455 ~~------------------~~---~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~----~dG~l  509 (553)
                      ++                  .+   .+..|+.-||+|+..   .|.|+             |+.||+.++.    ..-.+
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~---~GLyR-------------YrlGDvv~V~Gf~n~~P~~  441 (612)
T PLN02620        378 NGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTY---AGLYR-------------YRVGDVLRVAGFKNKAPQF  441 (612)
T ss_pred             ccccccccccccccccccCccccHHHccCCCeEEEEEEec---CceEE-------------EecCCEEEEeeecCCCceE
Confidence            00                  01   123456677887652   33332             8999998874    23469


Q ss_pred             EEEecccCceecCCceeecchhHHHHHhc
Q 008787          510 KIIDRKKNLIKISQGEYVALEYLENVYCV  538 (553)
Q Consensus       510 ~~~GR~~d~i~~~~G~~~~~~~iE~~l~~  538 (553)
                      .|++|.+.+..+ .|+|.+-.++-.++.+
T Consensus       442 ~Fv~R~~~~lsi-~gEK~tE~~l~~Av~~  469 (612)
T PLN02620        442 SFICRKNVVLSI-DSDKTDEVELQNAVKN  469 (612)
T ss_pred             EEEeecCceeec-ccccCCHHHHHHHHHH
Confidence            999999999998 8999999998888753

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=93.69  E-value=0.36  Score=48.56  Aligned_cols=97  Identities=10%  Similarity=0.004  Sum_probs=77.0

Q ss_pred             CCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch--hHHHHHHHHHhcCCEEeeCCCCCChhHHHHHH
Q 008787           69 GKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVPLYDTLGPGAVNFIL  144 (553)
Q Consensus        69 ~~~~~~--~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l  144 (553)
                      |.+|..  .-+|+.|....+..+|+.|...|..+||+|.+...-+.  .-+-..+|+.++|+.++|+.+.. -+....++
T Consensus       100 GTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~-~~~~~~l~  178 (438)
T COG1541         100 GTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGN-TERQLELM  178 (438)
T ss_pred             CCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCcc-HHHHHHHH
Confidence            344433  36899999999999999999999999999998776221  12668899999999999998843 45567889


Q ss_pred             hhcCceEEEEcchhhhhhhccc
Q 008787          145 DHAEIDFVFVQDKKVKELLSPD  166 (553)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~~~~  166 (553)
                      ++.++.+|.+.+..+-.+.+..
T Consensus       179 ~df~~tvI~~tps~~l~lae~~  200 (438)
T COG1541         179 KDFKPTVIAATPSYLLYLAEEA  200 (438)
T ss_pred             HhcCCcEEEEChHHHHHHHHHH
Confidence            9999999999998766554444

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=86.04  E-value=7.9  Score=40.06  Aligned_cols=91  Identities=12%  Similarity=0.030  Sum_probs=67.2

Q ss_pred             CCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh--HHHHHHHHHhcCCEEeeCCCCCChhHHHHH
Q 008787           68 DGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ--WVEAMEACNALSLICVPLYDTLGPGAVNFI  143 (553)
Q Consensus        68 d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~  143 (553)
                      .|.+|..+  .+|..++...+...+..+...|+++||++.+..+.+..  ....++++..+|+.+++...   ......+
T Consensus        95 SGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~  171 (445)
T TIGR03335        95 SGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRI  171 (445)
T ss_pred             CCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHH
Confidence            45556554  57888998888888888888899999999998876543  23446788899998876643   2345678


Q ss_pred             HhhcCceEEEEcchhhhh
Q 008787          144 LDHAEIDFVFVQDKKVKE  161 (553)
Q Consensus       144 l~~~~~~~i~~~~~~~~~  161 (553)
                      ++..++.+++......-.
T Consensus       172 i~~~~~t~l~~~ps~ll~  189 (445)
T TIGR03335       172 IESYRPTGIVASVFKLLR  189 (445)
T ss_pred             HHHhCCCEEEECHHHHHH
Confidence            899999998877665433

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=85.82  E-value=7.1  Score=40.05  Aligned_cols=96  Identities=17%  Similarity=0.143  Sum_probs=70.4

Q ss_pred             CCCCCCceE--eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch--hHHHHHHHHHhcCCEEeeCCCCCChhHHHHH
Q 008787           68 DGKFGPYVW--KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVPLYDTLGPGAVNFI  143 (553)
Q Consensus        68 d~~~~~~~~--~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~  143 (553)
                      .|.+|..+.  +|..++......++..+...|+++||++....+...  ......+++...|+.+++++... .+.+-..
T Consensus        84 SGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~  162 (422)
T TIGR02155        84 SGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQL  162 (422)
T ss_pred             CCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHH
Confidence            566776654  466666666666777777789999999887665443  22334677889999999887654 5778899


Q ss_pred             HhhcCceEEEEcchhhhhhhc
Q 008787          144 LDHAEIDFVFVQDKKVKELLS  164 (553)
Q Consensus       144 l~~~~~~~i~~~~~~~~~~~~  164 (553)
                      ++..++.+++..+.....+.+
T Consensus       163 i~~~~~t~l~~~Ps~l~~L~~  183 (422)
T TIGR02155       163 IQDFKPDIIMVTPSYMLNLLE  183 (422)
T ss_pred             HHHHCCCEEEEcHHHHHHHHH
Confidence            999999999999887665543

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=80.48  E-value=32  Score=36.11  Aligned_cols=119  Identities=9%  Similarity=-0.029  Sum_probs=79.0

Q ss_pred             CCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEeeCCC
Q 008787           57 GNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPLYD  133 (553)
Q Consensus        57 ~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l~~  133 (553)
                      +.++++..  ..+.+|..+  .+|+..+...+.....   ..+++++|++....+....+ +...++++..|+..+..+.
T Consensus       167 ~~~~~i~~--TSGtTG~PK~v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~  241 (521)
T PRK06187        167 NDAAAMLY--TSGTTGHPKGVVLSHRNLFLHSLAVCA---WLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRR  241 (521)
T ss_pred             cceEEEEE--CCCCCCCCceEEeehHHHHHHHHHHHH---hhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCC
Confidence            44555433  145566554  5688887766655544   44789999998887755333 3345568889999887766


Q ss_pred             CCChhHHHHHHhhcCceEEEEcchhhhhhhccccc---cccCccEEEEecC
Q 008787          134 TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR---SAQRLRVMVCFTS  181 (553)
Q Consensus       134 ~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  181 (553)
                      . +.+.+...+++.++..+++.+.....+......   ....++.++.-++
T Consensus       242 ~-~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge  291 (521)
T PRK06187        242 F-DPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGA  291 (521)
T ss_pred             C-CHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCc
Confidence            4 888999999999999999988877666543322   2234455444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	553
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		9e-22
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		4e-20
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		8e-20
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		7e-18
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		3e-17
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		1e-15
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		2e-15
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-15
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-15
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-15
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		5e-15
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		3e-14
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		4e-14
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		4e-14
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		5e-14
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		2e-13
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		3e-13
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		3e-13
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		9e-13
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		2e-12
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		6e-12
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		3e-11
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		4e-11
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		9e-11
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		1e-10
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		1e-09
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		2e-09
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		8e-09
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		1e-08
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		6e-07
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		2e-06
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		2e-06
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		3e-06
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		3e-06
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		1e-05
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		3e-05
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		1e-04
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		4e-04
4gr4_A	469	Crystal Structure Of Slgn1deltaasub Length = 469		5e-04

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score =  101 bits (252), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 142/548 (25%), Positives = 221/548 (40%), Gaps = 121/548 (22%)
Query: 32  NGFPS--VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKT-YKEVYEEVLQ 88
           N FPS  +D +LN  WD    +        + G +  V       V +T Y EVY+   +
Sbjct: 7   NAFPSTMMDEELNL-WDFLERAAA------LFGRKEVVSRLHTGEVHRTTYAEVYQRARR 59
Query: 89  IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAE 148
           ++  LRA G   G RV   G N  + +EA  A   +  +       L P  + +IL+HAE
Sbjct: 60  LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE 119
Query: 149 IDFVFVQDKKV---KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH 205
            D V + D  +    E +  + ++ Q   VM       A +  +A +             
Sbjct: 120 -DKVLLFDPNLLPLVEAIRGELKTVQHFVVM----DEKAPEGYLAYEEA----------- 163
Query: 206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI------ATFVSGVDLFLDQF 259
           LG+  +   +P +    C + YT+GT+G PKGVV +H  +      A+ V G  L     
Sbjct: 164 LGEEADPVRVPER--AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTAL----- 216
Query: 260 EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD---LMEL----K 312
               +  DV L  +P+ H+       +     A++      L   R D   L+EL     
Sbjct: 217 ----SEKDVVLPVVPMFHV-----NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEG 267
Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
            T  AGVP V+  + + ++     L+ LRR                              
Sbjct: 268 VTFTAGVPTVWLALADYLESTGHRLKTLRR------------------------------ 297
Query: 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF---- 428
                         LV+ G A   + +  F R+     + QGYGLTET       F    
Sbjct: 298 --------------LVVGGSAAPRSLIARFERMGVE--VRQGYGLTETSPVVVQNFVKSH 341
Query: 429 ------PDEMCMVGTAG-PVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYY 480
                  +++ +    G P+ +   +RL    E G   P D    GEV ++G  +  GYY
Sbjct: 342 LESLSEEEKLTLKAKTGLPIPL---VRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYY 398
Query: 481 KNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA 539
            N + TR ++  DG+F TGDI      G V+I DR K+LIK S GE+++   LEN     
Sbjct: 399 GNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWISSVDLENALMGH 457
Query: 540 PIIEDVSI 547
           P +++ ++
Sbjct: 458 PKVKEAAV 465

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 138/331 (41%), Gaps = 60/331 (18%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G PKG V+    +AT +   D   D ++   T +DV +  LPL H+   V+ 
Sbjct: 160 VVYTSGTTGPPKGAVIPRRALATTL---DALADAWQ--WTGEDVLVQGLPLFHVHGLVLG 214
Query: 285 EYF-FRRGASVGYY-----HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                RRG SV +       G    L D       T+L GVP ++ +I E +    E   
Sbjct: 215 ILGPLRRGGSVRHLGRFSTEGAARELNDGA-----TMLFGVPTMYHRIAETLPADPE--- 266
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                                        LA  LA            RL++SG A L   
Sbjct: 267 -----------------------------LAKALAG----------ARLLVSGSAALPVH 287
Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
             E +       +++ YG+TET   T+V   D     GT G      ELRL E      +
Sbjct: 288 DHERIAAATGRRVIERYGMTETLMNTSVRA-DGEPRAGTVGVPLPGVELRLVEEDGTPIA 346
Query: 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKN 517
            LD    GE+ VRG  LF+ Y   PD T  +   DG+F TGD+    P+G V+I+ RK  
Sbjct: 347 ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKAT 406
Query: 518 LIKISQGEYVALEYLENVYCVAPIIEDVSIS 548
            +  S G  +    +EN     P + + +++
Sbjct: 407 DLIKSGGYKIGAGEIENALLEHPEVREAAVT 437

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 146/332 (43%), Gaps = 72/332 (21%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVI 283
           IMYTSGT+G PKGVV THE++ +  S     +D ++ D++      L  LP+ H+     
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL------LLPLPMFHVAALTT 228
Query: 284 EEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
             +   RG + +     D   +   ++E +  +   VP +   +                
Sbjct: 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM---------------- 272
Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
                               R+    A+L A            R  I+GGAP+    E  
Sbjct: 273 --------------------RQVPEFAELDA---------PDFRYFITGGAPMP---EAL 300
Query: 403 LRVTCCAFL--VQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEE----VPEM 455
           +++     +  VQGY LTE+CG  T+    D +   G+AG  ++++++ +      + E 
Sbjct: 301 IKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREH 360
Query: 456 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK 515
           G         GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + I DR 
Sbjct: 361 GE--------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRL 412
Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           K++I IS GE V    +E+V    P + +V++
Sbjct: 413 KDMI-ISGGENVYPAEIESVIIGVPGVSEVAV 443

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 155/345 (44%), Gaps = 71/345 (20%)
Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVS------GVDLFLDQFEDKMTVDDVYLS 271
            P ++  + Y+SGT+G PKGV+LTH+ + T V+        +L+          DDV L 
Sbjct: 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS-------DDVILC 275
Query: 272 FLPLAHILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
            LP+ HI     I     R GA++      ++N L + +   K T+   VP +   I + 
Sbjct: 276 VLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS 335
Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
            +                  KY L+                              +R+V 
Sbjct: 336 SETE----------------KYDLS-----------------------------SIRVVK 350
Query: 390 SGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPT---TVCFPDEMCMV--GTAGPVSV 443
           SG APL  E+E+ +      A L QGYG+TE  GP    ++ F  E   V  G  G V  
Sbjct: 351 SGAAPLGKELEDAVNAKFPNAKLGQGYGMTE-AGPVLAMSLGFAKEPFPVKSGACGTVVR 409
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 502
            +E+++ + P+ G S   + P GE+C+RG  +  GY  NP  T E+I  DGW HTGDIG 
Sbjct: 410 NAEMKIVD-PDTGDSLSRNQP-GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGL 467
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           I  +  + I+DR K LIK  +G  VA   LE +    P I DV++
Sbjct: 468 IDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAV 511

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 120/484 (24%), Positives = 194/484 (40%), Gaps = 78/484 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E +E  +++  A++  G     R+ +   N  Q+   +     + +   P  D    
Sbjct: 57  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCR--SAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             +   ++ ++   VFV  K ++++L+   +    Q++ +M   T     Q      T  
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 250
            P  ++E+  +          P+ F+    I  IM +SG++G PKGV L H  +A  F  
Sbjct: 177 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSH 226
Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
             D     F +++  D   LS +P           + F    ++GY              
Sbjct: 227 ARDPI---FGNQIAPDTAILSVVPF---------HHGFGMFTTLGY-------------- 260
Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
               L++G   V                 L  R  + L+   L      YK + A  +  
Sbjct: 261 ----LISGFRVV-----------------LMYRFEEELFLRSL----QDYKIQSALLVPT 295
Query: 371 LLAFRKVKARLG----GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 425
           L +F      +       L  + SGGAPLS EV E   +      + QGYGLTET     
Sbjct: 296 LFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 355
Query: 426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
           +  P      G  G V  + E ++ ++ + G + L     GE+ VRG  + SGY  NP+ 
Sbjct: 356 IT-PKGDDKPGAVGKVVPFFEAKVVDL-DTGKT-LGVNQRGELSVRGPMIMSGYVNNPEA 412
Query: 486 TRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           T   I  DGW H+GDI     +    I+DR K+LIK  +G  VA   LE++    P I D
Sbjct: 413 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGCQVAPAELESILLQHPNIFD 471
Query: 545 VSIS 548
             ++
Sbjct: 472 AGVA 475

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 128/304 (42%), Gaps = 62/304 (20%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G  KG  L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G  RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTKETTGHXRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAKTGHAVLERYGXTETNXNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGK 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V+G  +F GY++ P+ T+    D G+F TGD+G+I   G V I+ R 
Sbjct: 341 ELPRGD--IGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRG 398
Query: 516 KNLI 519
           K+L+
Sbjct: 399 KDLV 402

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 126/298 (42%), Gaps = 71/298 (23%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVI 283
           IMYTSGT+G PKGVV THE++ +  S     +D ++ D++      L  LP+ H+     
Sbjct: 161 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL------LLPLPMFHVAALTT 214
Query: 284 EEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
             +   RG + +     D   +   ++E +  +   VP +   +                
Sbjct: 215 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM---------------- 258
Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
                               R+    A+L A            R  I+GGAP+    E  
Sbjct: 259 --------------------RQVPEFAELDA---------PDFRYFITGGAPMP---EAL 286
Query: 403 LRVTCCAFL--VQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEE----VPEM 455
           +++     +  VQGY LTE+CG  T+    D +   G+AG  ++++++ +      + E 
Sbjct: 287 IKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREH 346
Query: 456 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513
           G         GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + I D
Sbjct: 347 GE--------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKD 396

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 135/332 (40%), Gaps = 56/332 (16%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS--------- 300
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 399 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 517 NLIKISQGEYVALEYLENVYCVAPIIEDVSIS 548
           +LIK  +G  V    LE+V    P I D  ++
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVA 472

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 135/332 (40%), Gaps = 56/332 (16%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS--------- 300
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 399 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 517 NLIKISQGEYVALEYLENVYCVAPIIEDVSIS 548
           +LIK  +G  V    LE+V    P I D  ++
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVA 472

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 135/332 (40%), Gaps = 56/332 (16%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKS--------- 300
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 399 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 517 NLIKISQGEYVALEYLENVYCVAPIIEDVSIS 548
           +LIK  +G  V    LE+V    P I D  ++
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVA 472

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 94/176 (53%), Gaps = 23/176 (13%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMV-------- 435
           LR++ SGGAPL  E+E+ +R     A L QGYG+TE  GP        MC+         
Sbjct: 299 LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE-AGPVLA-----MCLAFAKEPFDI 352
Query: 436 --GTAGPVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I 491
             G  G V   +E+++ + PE G S P + P  GE+C+RG  +  GY  +P+ T  +I  
Sbjct: 353 KPGACGTVVRNAEMKIVD-PETGASLPRNQP--GEICIRGDQIMKGYLNDPEATSRTIDK 409
Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           +GW HTGDIG I  +  + I+DR K LIK  +G  VA   LE +    P I D ++
Sbjct: 410 EGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAV 464

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 366
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 501
            + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T   I  DGW H+GDI 
Sbjct: 367 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 424
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSIS 548
               +    I+DR K+LIK  +G  VA   LE++    P I D  ++
Sbjct: 425 YWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVA 470

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 313 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 371
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 501
            + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T   I  DGW H+GDI 
Sbjct: 372 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 429
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSIS 548
               +    I+DR K+LIK  +G  VA   LE++    P I D  ++
Sbjct: 430 YWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVA 475

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 366
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 501
            + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T   I  DGW H+GDI 
Sbjct: 367 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 424
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSIS 548
               +    I+DR K+LIK  +G  VA   LE++    P I D  ++
Sbjct: 425 YWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVA 470

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 175/476 (36%), Gaps = 84/476 (17%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+++      ++ S L   G   G RV I   NC + +E + A   +  I +P       
Sbjct: 33  THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLP------- 85
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             VN+ L+  EI FV         +   D R      V     SL   +K  A+  G  P
Sbjct: 86  --VNYRLNADEIAFVLGDGAPSVVVAGTDYRDI----VAGVLPSLGGVKKAYAIGDGSGP 139
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
           ++   F  L              +   I++T+   G P+G +++   +    S +   +D
Sbjct: 140 FA--PFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSL---VD 194
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRG-ASVGYYHGDLNALRDDLMELKPTLL 316
            +  ++T  DV L  LPL H+    +     + G ASV     D      D+   K T++
Sbjct: 195 AW--RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVM 252
Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRK 376
           A                  E  P+   I D                 +A+P A L + R 
Sbjct: 253 A------------------EFAPMLGNILD-----------------QAAP-AQLASLRA 276
Query: 377 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMV 435
           V              G      +E F      A     +G +ET G +T   + D     
Sbjct: 277 VT-------------GLDTPETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR---- 319
Query: 436 GTAGPVSVYSEL--RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
               P S    L  R   V +    PL     GE+ +RG T+F GY+ N   T+ +  +G
Sbjct: 320 ----PKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNG 375
Query: 494 WFHTGDIGQILPNGVVKIIDR--KKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           W HTGD+G+   +G +    R  +K LIK + GE V    +E      P I D  +
Sbjct: 376 WHHTGDMGRFDADGYLFYAGRAPEKELIK-TGGENVYPAEVEGALKQHPAIADAVV 430

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R 
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 516 KNLI 519
            +L+
Sbjct: 399 XDLV 402

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R 
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 516 KNLI 519
            +L+
Sbjct: 399 XDLV 402

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R 
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 516 KNLI 519
            +L+
Sbjct: 399 XDLV 402

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 81/167 (48%), Gaps = 5/167 (2%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPL+ EV E   +      + QGYGLTET     +         G  G V 
Sbjct: 342 NLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVV 401
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 501
            +   ++ ++ + G + L     GE+CV+G  +  GY  NP+ T   I  DGW H+GDI 
Sbjct: 402 PFFSAKIVDL-DTGKT-LGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIA 459
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSIS 548
               +G   I+DR K+LIK  +G  V    LE++    P I D  ++
Sbjct: 460 YYDKDGYFFIVDRLKSLIKY-KGYQVPPAELESILLQHPFIFDAGVA 505

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 112/482 (23%), Positives = 178/482 (36%), Gaps = 93/482 (19%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ EE  +I   L+  GA  G  V +Y     + V  +          +P+   L  
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPE 550
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             ++++L           D     LL+      Q   +    T+L  + +    +    P
Sbjct: 551 DRISYML----------ADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDP 600
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            +              I P  P     IMYTSGT+G PKG + TH  I   V  VD    
Sbjct: 601 AT-------------AIDPNDP---AYIMYTSGTTGKPKGNITTHANIQGLVKHVDYM-- 642
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            F D+    D +LS           +  Y F    +  +Y   LNA R  + + + TLL 
Sbjct: 643 AFSDQ----DTFLS-----------VSNYAFD-AFTFDFYASMLNAARLIIAD-EHTLLD 685
Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 377
                 E++ + I +    +      +F+ L      WM                     
Sbjct: 686 T-----ERLTDLILQENVNVMFATTALFNLLTDAGEDWMK-------------------- 720
Query: 378 KARLGGRLRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEM 432
                  LR ++ GG   S   V + LR+     L+  YG TE     T       PD +
Sbjct: 721 ------GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSI 774
Query: 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID 492
             +    P+S  S   L E  ++   P      GE+C+ G  +  GY    DLT+E  I+
Sbjct: 775 SSLPIGKPISNASVYILNEQSQL--QPFG--AVGELCISGMGVSKGYVNRADLTKEKFIE 830
Query: 493 GWF-------HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDV 545
             F        TGD+ + LP+G ++   R  + +KI +G  + LE +E      P ++D 
Sbjct: 831 NPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDA 889
Query: 546 SI 547
            +
Sbjct: 890 VV 891

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 109/473 (23%), Positives = 175/473 (36%), Gaps = 74/473 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+    ++    L        V+ G +
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR----IIFLGDL--------VRDG-E 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V GYG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNGYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + +V +
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVV 432

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 108/473 (22%), Positives = 174/473 (36%), Gaps = 74/473 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+    ++    L        V+ G +
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR----IIFLGDL--------VRDG-E 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNAYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + +V +
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVV 432

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 108/473 (22%), Positives = 175/473 (36%), Gaps = 74/473 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+    ++    L        V+ G +
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR----IIFLGDL--------VRDG-E 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVIEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P+ T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPEATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + +V +
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVV 432

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 108/473 (22%), Positives = 174/473 (36%), Gaps = 74/473 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+    ++    L        V+ G +
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR----IIFLGDL--------VRDG-E 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + +V +
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVV 432

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 108/473 (22%), Positives = 174/473 (36%), Gaps = 74/473 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+    ++    L        V+ G +
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR----IIFLGDL--------VRDG-E 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + +V +
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVPDMI-ISGGENIHPSEIERVLGTAPGVTEVVV 432

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 14/163 (8%)
Query: 384 RLRLVISGGAPLS-TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAGPV 441
            L+ ++ GGA LS T +E  L+     +    +G+TETC       P+ +     T G  
Sbjct: 275 NLQKILLGGAKLSATMIETALQYNLPIY--NSFGMTETCSQFLTATPEMLHARPDTVGMP 332
Query: 442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
           S   +++++   + G+        GE+ ++G  + +GY    DLT  +  +G+F+TGDI 
Sbjct: 333 SANVDVKIKNPNKEGH--------GELMIKGANVMNGYLYPTDLTG-TFENGYFNTGDIA 383
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           +I   G V I DR+K+LI IS GE +    +E V    P I D
Sbjct: 384 EIDHEGYVMIYDRRKDLI-ISGGENIYPYQIETVAKQFPGISD 425

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 6/165 (3%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 443
           L+++  GGA  S E    ++      L Q +G+ E     T     E  +V T G P+S 
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSP 359
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQ 502
           Y E R+ +  +    P +    G +  RG     GYYK  +    S   DG++ TGDI +
Sbjct: 360 YDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR 416
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           +  +G + +  R K+ I    GE VA E +EN     P + D ++
Sbjct: 417 LTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHDAAM 460

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 108/473 (22%), Positives = 168/473 (35%), Gaps = 74/473 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E    V    ++V + +      A+    ++    L        V+ G +
Sbjct: 91  AELAELIKRGEXTAAVIAVGRQVADAIFQSGSGAR----IIFLGDL--------VRDG-E 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF 
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFX 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L   PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLXPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA     V E +        V  YG TE         P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNIYGTTEAXNSLYXRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           + T D+    P G V+I+ R  + I IS GE +    +E V   AP + +V +
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDXI-ISGGENIHPSEIERVLGTAPGVTEVVV 432

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 6/164 (3%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 443
           L+++  GGA  S E    ++      L Q +G  E     T     E  +V T G P S 
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGXAEGLVNYTRLDDPEEIIVNTQGKPXSP 359
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQ 502
           Y E R+ +  +    P +    G +  RG     GYYK  +    S   DG++ TGDI +
Sbjct: 360 YDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR 416
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVS 546
           +  +G + +  R K+ I    GE VA E +EN     P + D +
Sbjct: 417 LTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHDAA 459

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVS 442
           L+  +  G PL+ EV   FL  T    L++G+G TET   T   FP      G+ G P  
Sbjct: 343 LKYAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETV-VTIATFPWMEPKPGSIGKPTP 400
Query: 443 VYS------ELRLEEVPEMG---YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
            Y       + RL EV E G    + ++  P G        LF  Y K+P+ T E+  DG
Sbjct: 401 GYKIELMDRDGRLCEVGEEGEIVINTMEGKPVG--------LFVHYGKDPERTEETWHDG 452
Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           ++HTGD+  +  +G +  + R  ++IK S
Sbjct: 453 YYHTGDMAWMDEDGYLWFVGRADDIIKTS 481

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/473 (19%), Positives = 180/473 (38%), Gaps = 80/473 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+++ +    I + L+A GA+PG RV +  A     ++A   C     I VP+Y    P
Sbjct: 42  TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY----P 97
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            A   +LD A             + +  + +    L +       TA++     +    P
Sbjct: 98  PAQEKLLDKA-------------QRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIP 144
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               E + L + +  +    +  +I  + YTSG++  PKGV ++H  +   +  ++    
Sbjct: 145 AIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNL---LDNLNKIFT 201
Query: 258 QFEDKMTVDDVYLSFLPLAH-------ILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
            F      + +  S+LP  H       IL  +         +   +    L+ L+  + +
Sbjct: 202 SFH--XNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLK-HITK 258
Query: 311 LKPTLLAG--------VPRVFEKIHEGIK-----KALEELRPLRRRIFDALYKYKLAWMN 357
            K T+           V R+ E+  EG+       A     P+R    +  Y+   A+  
Sbjct: 259 YKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQ---AFKE 315
Query: 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 417
            G+++    P   L               L+++GG P S+    +  +T      Q + +
Sbjct: 316 FGFRKEAFYPCYGL-----------AEATLLVTGGTPGSS----YKTLTLAKEQFQDHRV 360
Query: 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477
                 +    P    +V +  P+    E+++ +   +   P D    GE+ V+  ++  
Sbjct: 361 HFADDNS----PGSYKLVSSGNPI---QEVKIIDPDTL--IPCDFDQVGEIWVQSNSVAK 411
Query: 478 GYYKNPDLTRESIIDG---------WFHTGDIGQILPNGVVKIIDRKKNLIKI 521
           GY+  P+ TR +             +  TGD+G +  N +  +  R K+LI I
Sbjct: 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELY-VTGRIKDLIII 463

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 385 LRLVISGGAP----LSTEVEEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAG 439
           L+L+  GGA     L+ +V E L       L Q +G+ E     T +   DE        
Sbjct: 309 LKLLQVGGASFPESLARQVPEVLNCK----LQQVFGMAEGLVNYTRLDDSDEQIFTTQGR 364
Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
           P+S   E++   + +  Y  + +   G +  RG   F GYY++P+   +    D ++++G
Sbjct: 365 PISSDDEIK---IVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG 421
Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           D+ Q  P+G ++++ R K+ I    GE +A E +E +  + P
Sbjct: 422 DLVQRTPDGNLRVVGRIKDQIN-RGGEKIASEEIEKLILLHP 462

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 27/153 (17%)
Query: 412 VQGYGLTET--CGPTTVCFPDEMCM-VGTAGPVS------VYSELRLEEVPEMGYSPLDD 462
           +  YG TET  C  T V   + +   V    P+       V   L+L+ V E        
Sbjct: 320 INAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGE-------- 371
Query: 463 PPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF-------HTGDIGQILPNGVVKIIDRK 515
              GE+C+ G+ L  GY+K P+LT +  +D  F        TGD  + L +G ++ + R 
Sbjct: 372 --AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 429
Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDVSIS 548
            N +KI +G  V LE +E++      I + ++S
Sbjct: 430 DNQVKI-RGHRVELEEVESILLKHMYISETAVS 461

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 7/167 (4%)
Query: 378 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437
           +A+L   L+L+  GGA LS  +   +       L Q +G+ E     T        ++ T
Sbjct: 298 RAQLAS-LKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHT 356
Query: 438 AG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF 495
            G P+    E+    V +   +PL     G +  RG   F GYYK+P     +   +G++
Sbjct: 357 QGYPMCPDDEVW---VADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFY 413
Query: 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
            +GD+  I P G + +  R+K+ I    GE +A E +EN+    P +
Sbjct: 414 CSGDLISIDPEGYITVQGREKDQIN-RGGEKIAAEEIENLLLRHPAV 459

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 385 LRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
           +R  I+GG P S   V +  R      L  GYG  E+ G TT        + GTA P+ V
Sbjct: 328 VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---------DGW 494
               +   V +    P  +   GE+ V G  L  GY   P LT E  +         +  
Sbjct: 388 PLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERM 447
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKI 521
           + TGD+ +   +GV++ + R  + +KI
Sbjct: 448 YRTGDLARRRADGVLEYVGRADDQVKI 474

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 119/311 (38%), Gaps = 57/311 (18%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +I   +Y+SG++G PKG V TH   A      +L+       +  +DV  S   L     
Sbjct: 184 DIAFWLYSSGSTGKPKGTVHTH---ANLYWTAELYAKPILG-IAENDVVFSAAKL----- 234
Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                 FF  G   G            LM  +PT  A   R+ E             RP 
Sbjct: 235 ------FFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEH------------RPT 276
Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
                  LY                   A++L    + AR    +R+  S G  L  E+ 
Sbjct: 277 VFYGVPTLY-------------------ANMLVSPNLPARADVAIRICTSAGEALPREIG 317
Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV--GTAG-PVSVYSELRLEEVPEMGY 457
           E         ++ G G TE      +   +    V  GT G PV  Y E+ L +  E G+
Sbjct: 318 ERFTAHFGCEILDGIGSTEML---HIFLSNRAGAVEYGTTGRPVPGY-EIELRD--EAGH 371
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
           + + D   G++ ++G +    Y+ N + +R + +  W  +GD    LPNG      R  +
Sbjct: 372 A-VPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDD 430
Query: 518 LIKISQGEYVA 528
           ++K+S G+YV+
Sbjct: 431 MLKVS-GQYVS 440

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 413 QGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR---LEEVPEMGYSPLDDPPCGEVC 469
           Q +G TE C   T   P  +    T G      EL+   LE+  E+G         GE+ 
Sbjct: 333 QIWGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGE-----SGEIV 387
Query: 470 VRGKTLFSGYYKNPDLTRESII-----DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
           +RG  +F GY+K     +E          +F TGD+G I   G +   DR K +IK  +G
Sbjct: 388 IRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KG 446
Query: 525 EYVALEYLENVYCVAPIIEDVSI 547
             +A   LE +      + DV++
Sbjct: 447 YTIAPFELEALLXKHEAVXDVAV 469

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 510
           E+      P+ +   G +C+ G +L SGY+ +     E    GW  TGD+G +L +G + 
Sbjct: 396 EIRNEAGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLL-DGYLY 454
Query: 511 IIDRKKNLIKI 521
           +  R K+LI I
Sbjct: 455 VTGRIKDLIII 465

>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 10/140 (7%)
Query: 385 LRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
           +R  I+GG P S   V +  R      L  GYG  E+ G TT        + GTA P+ V
Sbjct: 328 VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---------DGW 494
               +   V +    P  +   GE+ V G  L  GY   P LT E  +         +  
Sbjct: 388 PLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERM 447
Query: 495 FHTGDIGQILPNGVVKIIDR 514
           + TGD+ +   +GV++ + R
Sbjct: 448 YRTGDLARRRADGVLEYVGR 467

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	553
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	8e-71
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	6e-68
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	8e-67
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	1e-65
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	8e-65
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	4e-62
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	2e-61
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	7e-60
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	8e-60
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	2e-58
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	4e-58
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	2e-56
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	9e-55
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	7e-53
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-52
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	5e-46
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-32
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	7e-29
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	9e-28
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	2e-27
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-14
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-10
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	6e-11
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	1e-09
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	2e-08
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	7e-08
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-07
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-07
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	7e-07
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	3e-04

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  234 bits (600), Expect = 8e-71
 Identities = 109/515 (21%), Positives = 172/515 (33%), Gaps = 102/515 (19%)

Query: 38  DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG 97
           D  +     +        P                     TY ++     +    L A G
Sbjct: 12  DDKMKNIGWMLRQRATVSPR------LQAYVEPSTDVRM-TYAQMNALANRCADVLTALG 64

Query: 98  AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157
              G RV +   N  ++         L  + VP+   L    V+FIL  +    V     
Sbjct: 65  IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGA- 123

Query: 158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP 217
                          +R                V   I   S  E L     +E   +  
Sbjct: 124 ---PSAP----VIDAIR--------AQADPPGTVTDWIGADSLAERLRSAAADE-PAVEC 167

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
              +   IMYTSGT+G PKGVV THE++ +  S     +D     +   D  L  LP+ H
Sbjct: 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID-----VRYRDRLLLPLPMFH 222

Query: 278 ILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
           +       +   RG ++      D   +   ++E +  +   VP +              
Sbjct: 223 VAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAIL------------- 269

Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
                               N             +    +         R  I+GGAP+ 
Sbjct: 270 --------------------NF------------MRQVPEFAELDAPDFRYFITGGAPMP 297

Query: 397 TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRL-----E 450
             + +          VQGY LTE+CG  T+   ++ +   G+AG  ++++++ +      
Sbjct: 298 EALIKIYAAKNIEV-VQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV 356

Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 510
                          GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + 
Sbjct: 357 IRE---------HGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLY 407

Query: 511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDV 545
           I DR K++I IS G        ENVY     IE V
Sbjct: 408 IKDRLKDMI-ISGG--------ENVYPAE--IESV 431

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  227 bits (580), Expect = 6e-68
 Identities = 98/510 (19%), Positives = 150/510 (29%), Gaps = 105/510 (20%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           ++   +  + P +  L                T+ E+   V  + + L A G  P  RV 
Sbjct: 6   EMLRRAATRAPDHCAL-----AVP-ARGLRL-THAELRARVEAVAARLHADGLRPQQRVA 58

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +   N    V A+ A + L  +            +N  L  AE+  +             
Sbjct: 59  VVAPNSADVVIAILALHRLGAVPAL---------LNPRLKSAELAELIK----------- 98

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ----PFN 221
                      V               +G +     + +  G+              P  
Sbjct: 99  RGEM----TAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQ 154

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--L 279
              I YTSGT+G PK  ++      + V  +     Q   +    +V L  +PL H+   
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFM---STQVGLRHGRHNVVLGLMPLYHVVGF 211

Query: 280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
             V+       G  V             + + + T L   P                   
Sbjct: 212 FAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHL---------------- 255

Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
                                       LA   A      +L   LR V   GA +   V
Sbjct: 256 ---------------DA-----------LAAAAAHAGSSLKL-DSLRHVTFAGATMPDAV 288

Query: 400 -EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
            E   +       V  YG TE      +  P      GT      +SE+R+  V   G  
Sbjct: 289 LETVHQHLPGEK-VNIYGTTEAMNSLYMRQPK----TGTEMAPGFFSEVRI--VRIGGGV 341

Query: 459 PLDDPP--CGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK 515
                    GE+ V    + F GY   P  T E + DGW+ T D+    P G V+I+ R 
Sbjct: 342 DEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRV 401

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDV 545
            ++I IS G        EN++     IE V
Sbjct: 402 DDMI-ISGG--------ENIHPSE--IERV 420

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  223 bits (572), Expect = 8e-67
 Identities = 94/505 (18%), Positives = 164/505 (32%), Gaps = 98/505 (19%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
                  Q+            +    G   + TY+ +Y E   +   L    A    RVG
Sbjct: 5   FWLYKQAQQNGH------HIAI--TDGQESY-TYQNLYCEASLLAKRL---KAYQQSRVG 52

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +Y  N  Q +  + AC   ++    +   L P  +   +   ++  +F        L   
Sbjct: 53  LYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL----PLELR 108

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
             +      +      +T               S +  +     + +        +I +I
Sbjct: 109 GFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASI 168

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           M+TSGT+G  K V  T         G    L         D  +LS LP+ HI    +  
Sbjct: 169 MFTSGTTGPQKAVPQTFRNHYASAIGCKESLG-----FDRDTNWLSVLPIYHISGLSVLL 223

Query: 286 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                G +V      +   +   +   + T ++ VP+    +          ++      
Sbjct: 224 RAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWL----------MQQGLHEP 273

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFL 403
           ++                                      L+ ++ GGA LS  + E  L
Sbjct: 274 YN--------------------------------------LQKILLGGAKLSATMIETAL 295

Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRL--EEVPEMGYSPL 460
           +      +   +G+TETC       P+       T G  S   ++++             
Sbjct: 296 QYNLP--IYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH----- 348

Query: 461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
                GE+ ++G  + +GY    D    +  +G+F+TGDI +I   G V I DR+K+LI 
Sbjct: 349 -----GELMIKGANVMNGYLYPTD-LTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLI- 401

Query: 521 ISQGEYVALEYLENVYCVAPIIEDV 545
           IS G        EN+Y     IE V
Sbjct: 402 ISGG--------ENIYPYQ--IETV 416

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  221 bits (565), Expect = 1e-65
 Identities = 94/510 (18%), Positives = 166/510 (32%), Gaps = 111/510 (21%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           D++  +   +P       R             T+++      ++ S L   G   G RV 
Sbjct: 10  DVYRRNAALFPD------RTAF--MVDGVRL-THRDYLARAERLASGLLRDGVHTGDRVA 60

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           I   NC + +E + A   +  I +P+   L    + F+L       V       +++++ 
Sbjct: 61  ILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVA-GTDYRDIVAG 119

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
              S   ++                   G     +  F  L              +   I
Sbjct: 120 VLPSLGGVKKAYA--------------IGDGSGPFAPFKDLASDTPFSAPEFGAADGFVI 165

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           ++T+   G P+G +++   +    S +          +T  DV L  LPL H+    +  
Sbjct: 166 IHTAAVGGRPRGALISQGNLLIAQSSLVDAWR-----LTEADVNLGMLPLFHVTGLGLML 220

Query: 286 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
              + G +       D      D+   K T++A    +   I       L++  P     
Sbjct: 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNI-------LDQAAP----- 268

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR 404
                                   A L             LR V     P +  +E F  
Sbjct: 269 ------------------------AQL-----------ASLRAVTGLDTPET--IERFEA 291

Query: 405 VTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-----EEVP--EMGY 457
               A     +G +ET G +T     +     +AG    +  + +       +P  E+G 
Sbjct: 292 TCPNATFWATFGQSETSGLSTFAPYRDR--PKSAGRPLFWRTVAVVDAEDRPLPPGEVG- 348

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR--K 515
                    E+ +RG T+F GY+ N   T+ +  +GW HTGD+G+   +G +    R  +
Sbjct: 349 ---------EIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE 399

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDV 545
           K LI  + G        ENVY     +E  
Sbjct: 400 KELI-KTGG--------ENVYPAE--VEGA 418

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  218 bits (558), Expect = 8e-65
 Identities = 113/482 (23%), Positives = 175/482 (36%), Gaps = 108/482 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+     ++ + L A G + G RV        + +    A      + +PL      
Sbjct: 30  SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL------ 83

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
              N      E+D+              D       +++VC  S       +A + G   
Sbjct: 84  ---NTAYTLHELDYFIT-----------DAEP----KIVVCDPSKRDGIAAIAAKVGATV 125

Query: 198 Y--------SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
                    S  +            +     ++  I+YTSGT+G  KG +L+H+ +A+  
Sbjct: 126 ETLGPDGRGSLTDAAAGAS-EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNS 184

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDD 307
             +  +        T DDV +  LP+ H   L        F RG+ +     D + +  D
Sbjct: 185 LTLVDYWR-----FTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL-D 238

Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
           LM  + T+L GVP  +                                            
Sbjct: 239 LMA-RATVLMGVPTFY-------------------------------------------- 253

Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTV 426
              LL   ++     G +RL ISG APL  +   E+   T  A L + YG+TET    T 
Sbjct: 254 -TRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVL-ERYGMTETN-MNTS 310

Query: 427 CFPDEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
              D   + G  GP       R+    PE G   L     G + V+G  +F GY++ P+ 
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARV--TDPETG-KELPRGDIGMIEVKGPNVFKGYWRMPEK 367

Query: 486 TRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI-IE 543
           T+     DG+F TGD+G+I   G V I+ R K+L+ I+ G         NVY   P  IE
Sbjct: 368 TKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLV-ITGG--------FNVY---PKEIE 415

Query: 544 DV 545
             
Sbjct: 416 SE 417

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  212 bits (543), Expect = 4e-62
 Identities = 94/518 (18%), Positives = 173/518 (33%), Gaps = 110/518 (21%)

Query: 33  GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRP-FVDGKFGPYVWK----TYKEVYEEVL 87
           GFPS+     +  D    + +K+        +   +  +            + E+ E   
Sbjct: 10  GFPSLYYPKISLADRIDAAAEKFGE------KTAIISAEPKFPSEFPESMNFLEICEVTK 63

Query: 88  QIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHA 147
           ++ S +   G   G  VG+   N   +V  + A   ++   VP         +N +    
Sbjct: 64  KLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVP---------INPMYKSF 114

Query: 148 EIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK--------PYS 199
           E++ +             D  +      +V  + L    K +  +TG++          S
Sbjct: 115 ELEHILN-----------DSEA----TTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNS 159

Query: 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259
             E +  G  +   +      ++  I YT GT+G PKGV+LTH  +A     + +     
Sbjct: 160 LSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATG-- 217

Query: 260 EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAG 318
              ++  D  +  +P+ H  +  +       G   V     +   L +++ + K T    
Sbjct: 218 ---LSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWA 274

Query: 319 VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378
           VP                  P      + L                         +    
Sbjct: 275 VP------------------P----ALNVLVNTL-------------ESSNKTYDWS--- 296

Query: 379 ARLGGRLRLVISGGAPLSTEVEE-FLRVTCC------AFLVQGYGLTETCGPTTVCFPDE 431
                 L++  +G  P++  + E  L++             Q +G+TE C   T   P  
Sbjct: 297 -----YLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR 351

Query: 432 MCMVGTAGPVSVYSELRLEEV-PEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
           +    T G      EL++  +  E G    + +   GE+ +RG  +F GY+K     +E 
Sbjct: 352 LDKSTTQGVPMSDIELKV--ISLEDGRELGVGES--GEIVIRGPNIFKGYWKREKENQEC 407

Query: 490 II-----DGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
                    +F TGD+G I   G +   DR K +IK  
Sbjct: 408 WWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYK 445

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  210 bits (538), Expect = 2e-61
 Identities = 113/502 (22%), Positives = 179/502 (35%), Gaps = 86/502 (17%)

Query: 34  FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
            P    +  +A       +++Y     +    F +   G     +Y E  E+   +  AL
Sbjct: 15  KPFYPIEEGSAGTQLRKYMERYAKLGAI---AFTNAVTGVDY--SYAEYLEKSCCLGKAL 69

Query: 94  RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
           +  G     R+ +   NC ++   + A   + +   P  +      +   L  ++   VF
Sbjct: 70  QNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129

Query: 154 VQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
                  KV  +     ++   ++ +V   S    +              D F+      
Sbjct: 130 SSKKGLDKVITV----QKTVTTIKTIVILDSKVDYRG---------YQCLDTFIKRNTPP 176

Query: 211 EMEI--LPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264
             +         +    +  IM +SG++G PKGV LTHE I T  S     +  + ++++
Sbjct: 177 GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI--YGNQVS 234

Query: 265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVF 323
                L+ +P  H         +   G  V      D       L + K T +  VP   
Sbjct: 235 PGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVP--- 291

Query: 324 EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGG 383
                               +F  L K +L        +       DL            
Sbjct: 292 ---------------T----LFAILNKSELL------NKY------DL-----------S 309

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   R      + QGYGLTET     +  P+     G +G V 
Sbjct: 310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETT-SAIIITPEGDDKPGASGKVV 368

Query: 443 VYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
              + ++  +  +     L   P   GEVCV+G  L  GY  NP+ T+E I  +GW HTG
Sbjct: 369 PLFKAKV--IDLDTK-KSL--GPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423

Query: 499 DIGQILPNGVVKIIDRKKNLIK 520
           DIG         I+DR K+LIK
Sbjct: 424 DIGYYDEEKHFFIVDRLKSLIK 445

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  205 bits (524), Expect = 7e-60
 Identities = 102/473 (21%), Positives = 150/473 (31%), Gaps = 109/473 (23%)

Query: 83  YEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNF 142
           Y E+     A  A       RV ++     +   A+ A     +  VPL    G   +  
Sbjct: 51  YAELAAAAGAT-AGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAH 109

Query: 143 ILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202
           IL  +    V            PD      L  +         +  +             
Sbjct: 110 ILSDSAPSLVLA---------PPDAELPPALGALERVDVDVRARGAVPED---------- 150

Query: 203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK 262
                             +   ++YTSGT+G PKG V+    +AT +  +          
Sbjct: 151 -------------GADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ----- 192

Query: 263 MTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP 320
            T +DV +  LPL H+  L   I     R G+                +    T+L GVP
Sbjct: 193 WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAR-ELNDGATMLFGVP 251

Query: 321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKAR 380
            ++ +                                          +A+ L      A+
Sbjct: 252 TMYHR------------------------------------------IAETLPADPELAK 269

Query: 381 LGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG 439
                RL++SG A L     E     T    + + YG+TET    T    D     GT G
Sbjct: 270 ALAGARLLVSGSAALPVHDHERIAAATGRRVI-ERYGMTETL-MNTSVRADGEPRAGTVG 327

Query: 440 PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
                 ELRL       +       LD    GE+ VRG  LF+ Y   PD T  +   DG
Sbjct: 328 VPLPGVELRLVEEDGTPIA-----ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDG 382

Query: 494 WFHTGDIGQILPNGVVKIIDRK-KNLIKISQGEYVALEYLENVYCVAPIIEDV 545
           +F TGD+    P+G V+I+ RK  +LI  S G          +      IE+ 
Sbjct: 383 FFRTGDMAVRDPDGYVRIVGRKATDLI-KSGG--------YKIGAGE--IENA 424

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  206 bits (526), Expect = 8e-60
 Identities = 116/502 (23%), Positives = 181/502 (36%), Gaps = 85/502 (16%)

Query: 34  FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
            P    +  TA +    ++++Y      G   F D      +  TY E +E  +++  A+
Sbjct: 12  APFYPLEDGTAGEQLHKAMKRYALVP--GTIAFTDAHIEVNI--TYAEYFEMSVRLAEAM 67

Query: 94  RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
           +  G     R+ +   N  Q+   +     + +   P  D      +   ++ ++   VF
Sbjct: 68  KRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 127

Query: 154 VQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL--HLGK 208
           V     +K+  +     +    ++ ++   S T  Q            S   F+  HL  
Sbjct: 128 VSKKGLQKILNVQ----KKLPIIQKIIIMDSKTDYQG---------FQSMYTFVTSHLPP 174

Query: 209 VNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264
                   P+ F+    I  IM +SG++G PKGV L H T     S     +  F +++ 
Sbjct: 175 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQII 232

Query: 265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVF 323
            D   LS +P  H         +   G  V   +  +       L + K      VP   
Sbjct: 233 PDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVP--- 289

Query: 324 EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGG 383
                               +F    K  L        +       DL            
Sbjct: 290 ---------------T----LFSFFAKSTLI------DKY------DL-----------S 307

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT-SAILITPEGDDKPGAVGKVV 366

Query: 443 VYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
            + E ++  V  + G   L       GE+CVRG  + SGY  NP+ T   I  DGW H+G
Sbjct: 367 PFFEAKV--VDLDTG-KTL--GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 421

Query: 499 DIGQILPNGVVKIIDRKKNLIK 520
           DI     +    I+DR K+LIK
Sbjct: 422 DIAYWDEDEHFFIVDRLKSLIK 443

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  202 bits (515), Expect = 2e-58
 Identities = 96/463 (20%), Positives = 161/463 (34%), Gaps = 84/463 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   +  SALR  G  P  R+ +   +      A        ++ V     L P
Sbjct: 50  TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               ++L H+    V      + + ++    SA+     +  +     +  +A       
Sbjct: 110 ADYVYMLTHSHARAVIA-SGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAP------ 162

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
             ++E +        +       +I   +Y+SG++G PKG V TH   A      +L+  
Sbjct: 163 -LFEELID-AAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH---ANLYWTAELYAK 217

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPT 314
                +  +DV  S   L           F    GA+          +A+   L+E +PT
Sbjct: 218 PILG-IAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPT 276

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
           +  GVP                           LY                     +L  
Sbjct: 277 VFYGVP--------------------------TLYAN-------------------MLVS 291

Query: 375 RKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
             + AR    +R+  S G  L  E+ E F     C  ++ G G TE      +       
Sbjct: 292 PNLPARADVAIRICTSAGEALPREIGERFTAHFGCE-ILDGIGSTEM-LHIFLSNRAGAV 349

Query: 434 MVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
             GT G PV  Y E+ L       VP  E+G          ++ ++G +    Y+ N + 
Sbjct: 350 EYGTTGRPVPGY-EIELRDEAGHAVPDGEVG----------DLYIKGPSAAVMYWNNREK 398

Query: 486 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
           +R + +  W  +GD    LPNG      R  +++K+S G+YV+
Sbjct: 399 SRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVS-GQYVS 440

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  203 bits (518), Expect = 4e-58
 Identities = 86/499 (17%), Positives = 159/499 (31%), Gaps = 115/499 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ +    +  +LR  G +PG    +   N  +      A   L +  V        
Sbjct: 52  SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL------- 104

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ---KEMAVQTG 194
               F    +E++  +    +   L++    +       +   +   E    + + +   
Sbjct: 105 --ALFSHQRSELNA-YASQIEPALLIADRQHALFSGDDFL--NTFVTEHSSIRVVQLLND 159

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA--TFVSGV 252
              ++  + ++     +    P     +     + GT+G PK +  TH         S  
Sbjct: 160 SGEHNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE 218

Query: 253 DLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF----------FRRGASVGYYHGDLN 302
                    + T    YL  +P AH         +          F  G +V     D +
Sbjct: 219 IC-------QFTQQTRYLCAIPAAHN--------YAMSSPGSLGVFLAGGTV-VLAADPS 262

Query: 303 ALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
           A       L    +  + A VP                                  W+  
Sbjct: 263 A--TLCFPLIEKHQVNVTALVP--------------------------PAV---SLWLQA 291

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGL 417
             +    + LA               L+L+  GGA LS  +         C  L Q +G+
Sbjct: 292 LIEGESRAQLA--------------SLKLLQVGGARLSATLAARIPAEIGCQ-LQQVFGM 336

Query: 418 TETCGPTTVCFPDEMCMVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVC 469
            E     T        ++ T G P+    E+ +       +P  E+G           + 
Sbjct: 337 AEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVG----------RLM 386

Query: 470 VRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
            RG   F GYYK+P     +   +G++ +GD+  I P G + +  R+K+ I    GE +A
Sbjct: 387 TRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQI-NRGGEKIA 445

Query: 529 LEYLENVYCVAPIIEDVSI 547
            E +EN+    P +   ++
Sbjct: 446 AEEIENLLLRHPAVIYAAL 464

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  197 bits (502), Expect = 2e-56
 Identities = 113/501 (22%), Positives = 191/501 (38%), Gaps = 89/501 (17%)

Query: 34  FPSVD--SDLNTAWDIFSMSVQKYPGNRMLGWRP-FVDGKFGPYVWKTYKEVYEEVLQIV 90
            P +    +L         ++  +        +P  ++G  G     TY +V     ++ 
Sbjct: 13  LPDIYIPKNLPL-HSYVLENLSNHSS------KPCLINGANGDVY--TYADVELTARRVA 63

Query: 91  SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEID 150
           S L   G + G  + ++  + P++V A    +    I         P  +      +   
Sbjct: 64  SGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAK 123

Query: 151 FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
            +  Q    +++   D      ++V +C  S                  + E     + N
Sbjct: 124 LLITQACYYEKVK--DFARESDVKV-MCVDSAPDGCL-----------HFSELTQADE-N 168

Query: 211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270
           E   +   P ++  + Y+SGT+G PKGV+LTH+ + T V+      +        +DV L
Sbjct: 169 EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP-NLYFHSEDVIL 227

Query: 271 SFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
             LP+ HI  L+ ++          +     ++ +L   + + K ++   VP        
Sbjct: 228 CVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVP-------- 279

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
                     P    +  ++ K               SP  D       K  L   LR++
Sbjct: 280 ----------P----VMMSIAK---------------SPDLD-------KHDLS-SLRMI 302

Query: 389 ISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSV 443
            SGGAPL  E+ +        A L QGYG+TE      +C            G  G V  
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362

Query: 444 YSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGD 499
            +E+++  V PE G + L  P    GE+C+RG  +  GY  +P+ T  +I  +GW HTGD
Sbjct: 363 NAEMKI--VDPETG-ASL--PRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGD 417

Query: 500 IGQILPNGVVKIIDRKKNLIK 520
           IG I  +  + I+DR K LIK
Sbjct: 418 IGYIDDDDELFIVDRLKELIK 438

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  192 bits (491), Expect = 9e-55
 Identities = 77/534 (14%), Positives = 161/534 (30%), Gaps = 124/534 (23%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
               I ++ VQ +P          +    G     +Y E+      + + L   G   G 
Sbjct: 31  PLTRILTVGVQSHPH------SLAI--ICGERQL-SYIELDRLSTNLATRLAEKGLGKGD 81

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
              +   N  ++     A     ++ +            +     E++  F++  + K L
Sbjct: 82  TALVQLPNVAEFYIVFFALLKAGVVVLN---------ALYSHRQYELNA-FIKQIQPKLL 131

Query: 163 LSPDCRSAQRLRVMV--CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
           +             +        + +  + +      +   +++       ++       
Sbjct: 132 IGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPAD 191

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            +     + G++G PK +  TH         S            +  +   L  LP  H 
Sbjct: 192 EVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-------GLNSNTRLLCALPAPHN 244

Query: 279 LDRVIEEYF----------FRRGASVGYYHGDLNALRDDLMEL----KPTLLAGVPRVFE 324
                   F             G  V     +      +   +    +  + + VP    
Sbjct: 245 --------FMLSSPGALGVLHAGGCV-VMAPNPEP--LNCFSIIQRHQVNMASLVPSAV- 292

Query: 325 KIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR 384
                                       + W+      +    +  L             
Sbjct: 293 ----------------------------IMWLE--KAAQYKDQIQSL------------- 309

Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAG-PV 441
            +L+  GGA     +  +   V  C  L Q +G+ E          D    +  T G P+
Sbjct: 310 -KLLQVGGASFPESLARQVPEVLNCK-LQQVFGMAEGL-VNYTRLDDSDEQIFTTQGRPI 366

Query: 442 SVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
           S   E+++      EVP  E+          G +  RG   F GYY++P+   +    D 
Sbjct: 367 SSDDEIKIVDEQYREVPEGEI----------GMLATRGPYTFCGYYQSPEHNSQVFDEDN 416

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           ++++GD+ Q  P+G ++++ R K+ I    GE +A E +E +  + P +   ++
Sbjct: 417 YYYSGDLVQRTPDGNLRVVGRIKDQI-NRGGEKIASEEIEKLILLHPEVMHAAL 469

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  187 bits (477), Expect = 7e-53
 Identities = 105/530 (19%), Positives = 178/530 (33%), Gaps = 120/530 (22%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T  D+      KY        R  +    G   W +Y+E+     ++ +  +  G +   
Sbjct: 26  TFGDLLRDRAAKYGD------RIAI--TCGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
           RV +   N  ++ E + A   L  + V                 +EI + F +  +    
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVF---------ALPSHRSSEITY-FCEFAEAAAY 126

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPF 220
           + PD  S    R +     + ++     ++  I     +EFL L  ++   +++   +  
Sbjct: 127 IIPDAYSGFDYRSLA--RQVQSKLP--TLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
           ++  +  + G++G  K +  TH+        S            +    VYL+ LP+AH 
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-------WLDHSTVYLAALPMAHN 235

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALR-------------DDLMEL----KPTLLAGVPR 321
                   +     S     G L  L              DD   L    K T+ A VP 
Sbjct: 236 --------Y---PLSSP---GVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPP 281

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
           +                              + WM+          L+ L        ++
Sbjct: 282 LA-----------------------------MVWMD--AASSRRDDLSSL--------QV 302

Query: 382 GGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAG 439
                    GGA  S E       V  C  L Q +G+ E          D    +V T G
Sbjct: 303 L------QVGGAKFSAEAARRVKAVFGCT-LQQVFGMAEGL-VNYTRLDDPEEIIVNTQG 354

Query: 440 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHT 497
            P+S Y E R+    +     +     G +  RG     GYYK  +    S   DG++ T
Sbjct: 355 KPMSPYDESRV--WDDHD-RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRT 411

Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           GDI ++  +G + +  R K+ I    GE VA E +EN     P + D ++
Sbjct: 412 GDIVRLTRDGYIVVEGRAKDQI-NRGGEKVAAEEVENHLLAHPAVHDAAM 460

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  192 bits (489), Expect = 1e-52
 Identities = 115/507 (22%), Positives = 189/507 (37%), Gaps = 93/507 (18%)

Query: 34  FPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSA 92
            P +   +  +  D    ++ ++     L     ++G  G     TY +V+    QI + 
Sbjct: 52  LPDIYIPNHLSLHDYIFQNISEFATKPCL-----INGPTGHVY--TYSDVHVISRQIAAN 104

Query: 93  LRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152
               G      V +   NCP++V +  A +              P  +      +    +
Sbjct: 105 FHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLI 164

Query: 153 FVQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV 209
             +     K+K L     ++   + ++    + +    E  +        + E       
Sbjct: 165 ITEARYVDKIKPL-----QNDDGVVIVCIDDNESVPIPEGCL-------RFTELTQSTT- 211

Query: 210 NEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV- 265
              E++     +   +  + Y+SGT+G PKGV+LTH+ +   V+ V   +D     +   
Sbjct: 212 EASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGL---VTSVAQQVDGENPNLYFH 268

Query: 266 -DDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRV 322
            DDV L  LP+ HI  L+ ++        A +     ++N L + +   K T+   VP  
Sbjct: 269 SDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP-- 326

Query: 323 FEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLG 382
                           P    I  A+ K               S   +       K  L 
Sbjct: 327 ----------------P----IVLAIAK---------------SSETE-------KYDLS 344

Query: 383 GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF----PDEMCMVGT 437
             +R+V SG APL  E+ +        A L QGYG+TE      +             G 
Sbjct: 345 -SIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGA 403

Query: 438 AGPVSVYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
            G V   +E+++  V P+ G   L       GE+C+RG  +  GY  NP  T E+I  DG
Sbjct: 404 CGTVVRNAEMKI--VDPDTG-DSL--SRNQPGEICIRGHQIMKGYLNNPAATAETIDKDG 458

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIK 520
           W HTGDIG I  +  + I+DR K LIK
Sbjct: 459 WLHTGDIGLIDDDDELFIVDRLKELIK 485

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  168 bits (429), Expect = 5e-46
 Identities = 124/500 (24%), Positives = 179/500 (35%), Gaps = 125/500 (25%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G     TY EVY+   +++  LRA G   G RV   G N  + +EA  A   +  +    
Sbjct: 43  GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK---E 188
              L P  + +IL+HAE   +   D  +  L+       + ++  V       E     E
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLF-DPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYE 161

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI--- 245
            A+     P    E                    C + YT+GT+G PKGVV +H  +   
Sbjct: 162 EALGEEADPVRVPE-------RAA----------CGMAYTTGTTGLPKGVVYSHRALVLH 204

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------LDRVIEEYFFRRGASVG 295
           +   S VD         ++  DV L  +P+ H+          L           GA   
Sbjct: 205 SLAASLVDGT------ALSEKDVVLPVVPMFHVNAWCLPYAATL----------VGAKQV 248

Query: 296 YYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351
                L+     L+EL      T  AGVP V                             
Sbjct: 249 LPGPRLDP--ASLVELFDGEGVTFTAGVPTV----------------------------- 277

Query: 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP---LSTEVEEF-LRVTC 407
              W+ +                     RL    RLV+ G A    L    E   + V  
Sbjct: 278 ---WLAL------------ADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVR- 321

Query: 408 CAFLVQGYGLTETCGPTTVCFP----------DEMCMVGTAGPVSVYSELRLEEVPEMGY 457
                QGYGLTET       F           +++ +    G       LR+ +  E   
Sbjct: 322 -----QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRP 375

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
            P D    GEV ++G  +  GYY N + TR ++  DG+F TGDI      G V+I DR K
Sbjct: 376 VPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLK 435

Query: 517 NLIKISQGEYVA-LEYLENV 535
           +LIK S GE+++ ++ LEN 
Sbjct: 436 DLIK-SGGEWISSVD-LENA 453

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  119 bits (301), Expect = 7e-29
 Identities = 83/442 (18%), Positives = 149/442 (33%), Gaps = 93/442 (21%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            ++E+ E   Q  + L  + G + G RV +     P+W   +  C    LI +P    + 
Sbjct: 75  NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKEL--LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
              + + L  ++   +   D+ ++E+  ++ +C S   LR+ +  +  + +         
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS---LRIKLLVSEKSCD--------- 182

Query: 195 IKPYSWDEFLHL--GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV 252
                W  F  L          +         I +TSGTSG PK    ++ ++       
Sbjct: 183 ----GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD 238

Query: 253 DLFLDQFEDKMTVDDVYLSFLPLA---HILDRVIEEYFFRRGASVGYYHG---DLNALRD 306
             +       +   D+  +        +IL  ++E +    GA    +     D   +  
Sbjct: 239 AGWTG-----LQASDIMWTISDTGWILNILCSLMEPWAL--GACTFVHLLPKFDPLVILK 291

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
            L       + G P V+              R L +     L  YK              
Sbjct: 292 TLSSYPIKSMMGAPIVY--------------RMLLQ---QDLSSYKF------------- 321

Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 425
                             L+  ++ G  L  E  E +   T    + + YG TET G T 
Sbjct: 322 ----------------PHLQNCVTVGESLLPETLENWRAQTGLD-IRESYGQTET-GLTC 363

Query: 426 VCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGY 479
           +         G  G   S Y    ++ + + G + L     G++ +R K      +FSGY
Sbjct: 364 MVSKTMKIKPGYMGTAASCY---DVQIIDDKG-NVLPPGTEGDIGIRVKPIRPIGIFSGY 419

Query: 480 YKNPDLTRESIIDGWFHTGDIG 501
             NPD T  +I   ++  GD G
Sbjct: 420 VDNPDKTAANIRGDFWLLGDRG 441

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  115 bits (290), Expect = 9e-28
 Identities = 84/507 (16%), Positives = 144/507 (28%), Gaps = 129/507 (25%)

Query: 52  VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111
            +  P +    +  +     G  +  T+ ++Y   L +   L   G+  G RV I     
Sbjct: 34  ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG 92

Query: 112 PQWVEAMEACNALSLICVPLYDTLGPGAVN---FILDHAEIDFVFVQDKKVKELLSPDCR 168
            ++V A         I VPL    G         +L  +    +      V ++      
Sbjct: 93  LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDV------ 146

Query: 169 SAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW--DEFLHLGKVNEMEILPPQPFNICTIM 226
                             + +A + G  P S    + L L   N       +  +   + 
Sbjct: 147 -----------------VQHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQ 189

Query: 227 YTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           YTSG++  P GVV++H+ +       +  +    +     +   +S+LP  H        
Sbjct: 190 YTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD------- 242

Query: 286 YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345
                   V                  P +L G P V       ++      RP   R  
Sbjct: 243 -----MGLVIGI-------------CAP-ILGGYPAVLTSPVSFLQ------RPA--RWM 275

Query: 346 DALYKYK--LAWM-NMGYKQREASPLADLLAFRKVKARLGG----RLRLVISGGAPLSTE 398
             +       +   N  +         +L A R     + G     +  ++SG   +   
Sbjct: 276 HLMASDFHAFSAAPNFAF---------ELAARRTTDDDMAGRDLGNILTILSGSERVQAA 326

Query: 399 -VEEFLRVTCCAF---------LVQGYGLTETC----------GPTTVCFPDEMCMVGTA 438
            ++ F       F         +   Y L E             P TV F  E    G A
Sbjct: 327 TIKRFAD----RFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHA 382

Query: 439 GPVSVYSELRLEEV------------PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486
            P +      L                +       D   GE+ V G  + +GY++ PD +
Sbjct: 383 KPCAGGGATSLISYMLPRSPIVRIVDSDTC-IECPDGTVGEIWVHGDNVANGYWQKPDES 441

Query: 487 RESII------------DGWFHTGDIG 501
             +                W  TGD G
Sbjct: 442 ERTFGGKIVTPSPGTPEGPWLRTGDSG 468

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  115 bits (290), Expect = 2e-27
 Identities = 90/496 (18%), Positives = 161/496 (32%), Gaps = 126/496 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+++ +    I + L+A GA+PG RV +  A     ++A   C     I VP+Y     
Sbjct: 42  TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQE 101

Query: 138 GA---VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
                   I+ +++   V +    +K+  + +  +  +   +     +  E  E+   + 
Sbjct: 102 KLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPA---IALESIELNRSSS 158

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
            +P                    +  +I  + YTSG++  PKGV+++H  +   ++ +  
Sbjct: 159 WQPT-----------------SIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT 201

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
                   M  + +  S+LP  H +           G            ++  +M     
Sbjct: 202 SFH-----MNDETIIFSWLPPHHDM-----------GLIGCILTPIYGGIQAIMMS---- 241

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK--LAWM-NMGYKQREASPLADL 371
                P  F +             PL       + KYK  ++   N  Y         D 
Sbjct: 242 -----PFSFLQ------------NPL--SWLKHITKYKATISGSPNFAY---------DY 273

Query: 372 LAFRKVKARLGG----RLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG---------YGL 417
              R  + +  G          +G  P+  E +E F +    AF   G         YGL
Sbjct: 274 CVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQ----AFKEFGFRKEAFYPCYGL 329

Query: 418 TETC----------GPTTVCFPDEMCMVGTAGPVSVYSELRLEEV-------------PE 454
            E               T+    E             S    + V             P+
Sbjct: 330 AEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPD 389

Query: 455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---------IDGWFHTGDIGQILP 505
               P D    GE+ V+  ++  GY+  P+ TR +             +  TGD+G  L 
Sbjct: 390 TL-IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLG-FLH 447

Query: 506 NGVVKIIDRKKNLIKI 521
              + +  R K+LI I
Sbjct: 448 ENELYVTGRIKDLIII 463

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 76.1 bits (188), Expect = 1e-14
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 33/218 (15%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
           V  + N A+D+  +  +  P    + W    D      ++ T+K++     +  +     
Sbjct: 51  VPENFNFAYDVVDVYARDSPEKLAMIW---CDDYGNEKIF-TFKDLKYYSDKAANFFVKH 106

Query: 97  GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
           G   G  V +   +   +   M   + L  I VP    L    + + ++ A +  +    
Sbjct: 107 GIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA 166

Query: 157 -----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211
                ++V E    +C      +  V                G     W +F    +   
Sbjct: 167 EDDVPEQVDEAH-AECGDIPLKKAKV---------------GGDVLEGWIDFRKELE-ES 209

Query: 212 MEILPPQPFNICT-------IMYTSGTSGDPKGVVLTH 242
             I       + T       + ++SGT+G PK V   +
Sbjct: 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDN 247

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 19/128 (14%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET---CGPTTVCFPDEMCMVGTAG 439
            L+  +  G PL+ EV   FL  T    L++G+G TET          FP      G+ G
Sbjct: 342 TLKYAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETVVTIAT----FPWMEPKPGSIG 396

Query: 440 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGYYKNPDLTRESIIDG 493
            P   Y   ++E +   G    +    GE+ +         LF  Y K+P+ T E+  DG
Sbjct: 397 KPTPGY---KIELMDRDG-RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDG 452

Query: 494 WFHTGDIG 501
           ++HTGD+ 
Sbjct: 453 YYHTGDMA 460

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 74.0 bits (181), Expect = 2e-14
 Identities = 54/373 (14%), Positives = 102/373 (27%), Gaps = 53/373 (14%)

Query: 150 DFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--KEMAVQTGIKPY----SWDEF 203
           D+    D  +K     D  +  +  +   F+  T       M  Q    P     + ++ 
Sbjct: 6   DYSLEIDAVMKAAQINDTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDL 65

Query: 204 LHLG-KVNEMEILPPQPF--------NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
                  + +   P            +   +  + GT+G PK VV     I   +S    
Sbjct: 66  RQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMS 125

Query: 255 FLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
                          L+ +P   HI+  + +E   R G        D    R     L  
Sbjct: 126 GYQHRP--GRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDID---PRWVKRSLSE 180

Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP--LADL 371
              A V +    + + ++  L       R +                     +P  L +L
Sbjct: 181 GDTATVRKYTHHLVDQVQNTLMNQDI--RFLV-------------------TTPPVLREL 219

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQGYGLTETCGPTTVCFP 429
           L   +V  ++   L  +  GG  L+ +  +F+   +         YG T   G +     
Sbjct: 220 LKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI 279

Query: 430 DEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKT---LFSGYYKNPDL 485
                       S +    +  V        ++    G V V   +    +    +    
Sbjct: 280 TSESQQVIYDSFSPFITYDV--VDSITA-QTVEYGERGNVIVTHLSPWAFYPRVAERDTA 336

Query: 486 TRESIIDGWFHTG 498
            R   + G+    
Sbjct: 337 IRLPGVSGFAGDR 349

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.0 bits (165), Expect = 5e-12
 Identities = 68/431 (15%), Positives = 119/431 (27%), Gaps = 116/431 (26%)

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD-PKGVVLTHE---- 243
           M  +TG   Y + + L    V E   +    F+   +        D PK ++   E    
Sbjct: 7   MDFETGEHQYQYKDILS---VFEDAFV--DNFDCKDVQ-------DMPKSILSKEEIDHI 54

Query: 244 -TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------ILDRVIEEYFFRRGASVGY 296
                 VSG          K    ++   F+          ++  +  E    R  S+  
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSMMT 109

Query: 297 --YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP--------------- 339
             Y    + L +D           V R+ +   + +++AL ELRP               
Sbjct: 110 RMYIEQRDRLYNDNQVFAKY---NVSRL-QPYLK-LRQALLELRPAKNVLIDGVLGSGKT 164

Query: 340 ------LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
                            +K+ W+N+       + L  L      +       R   S   
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNI 223

Query: 394 PLSTE-VEEFLRVTCC------AFLVQGYGLTETCGPTTV-CFPDEMC--MVGT------ 437
            L    ++  LR            LV    L           F +  C  ++ T      
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLV----LLNVQNAKAWNAF-NLSCKILLTTRFKQVT 278

Query: 438 -AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY--YKNPDLTRESIIDGW 494
                +  + + L+       +P       E     K+L   Y   +  DL RE +    
Sbjct: 279 DFLSAATTTHISLDHHSM-TLTP------DE----VKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 495 FHTGDIGQILPNGVVKI-------IDRKKNLIKISQGEYVALEYLE-----NVY---CVA 539
                I + + +G+           D+   +I+ S      L  LE      ++    V 
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS------LNVLEPAEYRKMFDRLSVF 381

Query: 540 PIIEDVSISYS 550
           P      I   
Sbjct: 382 P--PSAHIPTI 390

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 7e-10
 Identities = 56/444 (12%), Positives = 117/444 (26%), Gaps = 157/444 (35%)

Query: 71  FGPYVWKTYKEVY--EEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS-LI 127
           F  + W   K     E VL+++  L             + +N    + +++    L  L+
Sbjct: 182 FKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLL 238

Query: 128 CVPLY-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC--FTSLT- 183
               Y + L       +L +       VQ+ K     +  C      ++++   F  +T 
Sbjct: 239 KSKPYENCL------LVLLN-------VQNAKAWNAFNLSC------KILLTTRFKQVTD 279

Query: 184 ----AEQKEMAVQTGIKPYSWDEFLHL-GKVNEMEI--LPPQ-----PF----------- 220
               A    +++       + DE   L  K  +     LP +     P            
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 221 NICTIMYTSGTSGD----------------------------PKGVVLTHETIATF---- 248
            + T       + D                            P    +    ++      
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 249 -VSGVDLFLDQFEDK-----------MTVDDVYLSFLPLA------HILDRVIEEYFFRR 290
             S V + +++               +++  +YL            H    +++ Y   +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIPK 457

Query: 291 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKI--HEGIKKA-LEELRPLRRRIF-D 346
                +   DL     D               +  I  H  +K     E   L R +F D
Sbjct: 458 ----TFDSDDLIPPYLD------------QYFYSHIGHH--LKNIEHPERMTLFRMVFLD 499

Query: 347 ALYKYKLAWM-----NMGYKQREASPLADLLA-FRKVKARLGGRLRLVISGGAP----LS 396
                   ++     +       +  + + L   +  K          I    P    L 
Sbjct: 500 ------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--------ICDNDPKYERLV 545

Query: 397 TEVEEFLR-----VTCCAF--LVQ 413
             + +FL      + C  +  L++
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLR 569

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 64.1 bits (157), Expect = 6e-11
 Identities = 59/326 (18%), Positives = 99/326 (30%), Gaps = 106/326 (32%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSGT+G PKGV ++H+ + +F +     ++     +      L+  P +   D    
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNW---MIEDAAFDVPKQPQMLAQPPYS--FD---- 200

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 339
                   SV              M   PTL  G     +P+             E +  
Sbjct: 201 -------LSV--------------MYWAPTLALGGTLFALPK-------------ELVAD 226

Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE- 398
            ++ +F  + +  +            S     +            L      G  L+   
Sbjct: 227 FKQ-LFTTIAQLPVGIWTS-----TPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVST 280

Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
             +       A ++  YG TE     TV              +S   E+  E V      
Sbjct: 281 ARKLFERFPSAKIINAYGPTEA----TVA-------------LSAI-EITREMVDNYTRL 322

Query: 459 P------------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWF---- 495
           P            +D+          GE+ V G  +  GY  NP+ T E+          
Sbjct: 323 PIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAY 382

Query: 496 HTGDIGQILPNGV----------VKI 511
           HTGDIG +  + +          +K 
Sbjct: 383 HTGDIGSLTEDNILLYGGRLDFQIKY 408

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 60.3 bits (147), Expect = 1e-09
 Identities = 87/485 (17%), Positives = 158/485 (32%), Gaps = 150/485 (30%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI------CVPL 131
           +Y+E+ EE  +I   L+  GA  G  V +Y     + V  +        +       +P+
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG------VLKAGAAYLPV 544

Query: 132 YDTLGPGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
            D   P   ++++L  +    +    +++KE  +    +   L +               
Sbjct: 545 -DPKLPEDRISYMLADSAAACLLTH-QEMKEQAAELPYTGTTLFI--------------- 587

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
                              +    + P   +   IMYTSGT+G PKG + TH  I   V 
Sbjct: 588 --------DDQTRFEEQASDPATAIDPN--DPAYIMYTSGTTGKPKGNITTHANIQGLVK 637

Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV----GYYHGDLNAL 304
            VD          +  D +LS    A   D    +++      A +     +   D   L
Sbjct: 638 HVDYM------AFSDQDTFLSVSNYA--FDAFTFDFYASMLNAARLIIADEHTLLDTERL 689

Query: 305 RDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
            D +++    ++     +F  + +      + ++ LR                       
Sbjct: 690 TDLILQENVNVMFATTALFNLLTD---AGEDWMKGLRC---------------------- 724

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGP 423
                                  ++ GG   S   V + LR+     L+  YG TE    
Sbjct: 725 -----------------------ILFGGERASVPHVRKALRIMGPGKLINCYGPTE---- 757

Query: 424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP-------------LDD-----PP- 464
            TV               + +    + ++P+   S              L++     P  
Sbjct: 758 GTVF-------------ATAH---VVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFG 801

Query: 465 -CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH-------TGDIGQILPNGVVKIIDRKK 516
             GE+C+ G  +  GY    DLT+E  I+  F        TGD+ + LP+G ++   R  
Sbjct: 802 AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRID 861

Query: 517 NLIKI 521
           + +KI
Sbjct: 862 DQVKI 866

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 58/322 (18%), Positives = 95/322 (29%), Gaps = 104/322 (32%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLSFLPLAHILDR 281
           ++YTSG++G PKGV ++   +++F       +     K   +     +L     A   D 
Sbjct: 180 LLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRA--FDV 237

Query: 282 VIEEYF--FRRGAS--VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
            I E F  +R G     G     L+ L     EL  T    VP + ++         E+ 
Sbjct: 238 HIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----VPEDA 293

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
             L                                               +  GG  ++ 
Sbjct: 294 PHLVY---------------------------------------------LGVGGEKMTP 308

Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
             ++    +    LV  YG TE     T+               S    L   +   +G 
Sbjct: 309 RTQQIWSSSDRVALVNVYGPTE----VTIG-------------CSAGRILPDSDTRCIG- 350

Query: 458 SP--------LDD------PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGW--FHTGD 499
            P        L             GE+ + G  + +GY   PD      I+G   + TGD
Sbjct: 351 HPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGD 410

Query: 500 IGQILPNGV----------VKI 511
           I ++  +            VK+
Sbjct: 411 IVRMDADSSILFLGRKDEQVKV 432

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 54.0 bits (131), Expect = 7e-08
 Identities = 53/284 (18%), Positives = 91/284 (32%), Gaps = 84/284 (29%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I+YTSG++G+PKGV ++   + +F   +      F   ++   ++L+  P +   D    
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWIC---ADFP--VSGGKIFLNQAPFS--FD---- 196

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                   SV              M+L P L +G         + + K         + +
Sbjct: 197 -------LSV--------------MDLYPCLQSGGTLHCVT-KDAVNKP--------KVL 226

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFL 403
           F+ L K  L            S +   L        L       +  G  L     +  L
Sbjct: 227 FEELKKSGLNVWTS-----TPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALL 281

Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP---- 459
                A +   YG TE     TV              V+   E+  + +      P    
Sbjct: 282 ERFPKAKIFNTYGPTEA----TVA-------------VTSV-EITNDVISRSESLPVGFA 323

Query: 460 --------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 488
                   +D+     P    GE+ + G ++  GY   P+LT +
Sbjct: 324 KPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEK 367

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 57/322 (17%), Positives = 87/322 (27%), Gaps = 101/322 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I ++SGT+G PK +  TH  I        L L Q          +L   PL+   D    
Sbjct: 169 INFSSGTTGRPKAIACTHAGI------TRLCLGQSFLAFAPQMRFLVNSPLS--FDAATL 220

Query: 285 EYF--FRRGASV---GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
           E +     G           D   LR  + E           +F  + +      + L  
Sbjct: 221 EIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVD---LDPDCLGG 277

Query: 340 LRRRIF--DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
           LR+ +   D L                      +   R+   R                 
Sbjct: 278 LRQLLTGGDIL---------------------SVPHVRRALLRHPRLH------------ 304

Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV-------SVY---SEL 447
                        LV GYG TE    T      +  +     P+       +V       
Sbjct: 305 -------------LVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHG 351

Query: 448 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--------TGD 499
           +   + E   +       GE+   G  L  GY  +   TR S ++  +         TGD
Sbjct: 352 QE--IAEPDRA-------GEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGD 402

Query: 500 IGQILPNGV----------VKI 511
             +    G           VK+
Sbjct: 403 RARYDEQGRLRFIGRGDGQVKL 424

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 51.7 bits (125), Expect = 4e-07
 Identities = 50/284 (17%), Positives = 95/284 (33%), Gaps = 84/284 (29%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I+YTSG++G+PKGV +T+  + +F        + F   +    V+L+  P +   D    
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAV---EDFN--LQTGQVFLNQAPFS--FD---- 197

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                   SV              M++ P+L+ G         + I +         + +
Sbjct: 198 -------LSV--------------MDIYPSLVTGGTLWAID-KDMIARP--------KDL 227

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFL 403
           F +L +  +            S     L        +   ++  +  G  L  E   + +
Sbjct: 228 FASLEQSDIQVWTS-----TPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLI 282

Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP---- 459
                A ++  YG TE     TV              V+    +  E + +    P    
Sbjct: 283 ERFPKATIMNTYGPTEA----TVA-------------VTGI-HVTEEVLDQYKSLPVGYC 324

Query: 460 --------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 488
                   + +     P    GE+ + G ++  GY  +P+LT +
Sbjct: 325 KSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEK 368

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 50.9 bits (123), Expect = 7e-07
 Identities = 60/330 (18%), Positives = 103/330 (31%), Gaps = 124/330 (37%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G+PKG +L H+ I+        F +     +T  D    F  ++   D  + 
Sbjct: 187 VIYTSGTTGNPKGTMLEHKGISNLKVF---FENSLN--VTEKDRIGQFASIS--FDASVW 239

Query: 285 EYF--FRRGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
           E F     GAS+         D       + + + T++   P     +        E + 
Sbjct: 240 EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP------ERIL 293

Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
            ++                                              +I+ G+  S  
Sbjct: 294 SIQT---------------------------------------------LITAGSATSPS 308

Query: 399 -VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
            V ++         +  YG TE    TT+C              + +      +      
Sbjct: 309 LVNKWKEKVT---YINAYGPTE----TTIC-------------ATTW---VATKETIGHS 345

Query: 458 SP------------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH-- 496
            P            +D+          GE+C+ G+ L  GY+K P+LT +  +D  F   
Sbjct: 346 VPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPG 405

Query: 497 -----TGDIGQILPNGV----------VKI 511
                TGD  + L +G           VKI
Sbjct: 406 EKLYKTGDQARWLSDGNIEYLGRIDNQVKI 435

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           +Y+E++ +V +  + L   G + G  V IY    P+   AM AC
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	553
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.96
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.8
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.69
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.52
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	98.24
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	98.09
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	93.14
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	93.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	92.97
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	87.99
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	87.25
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	82.91
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	82.35
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	80.19

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=9.1e-69  Score=568.25  Aligned_cols=450  Identities=22%  Similarity=0.259  Sum_probs=367.8

Q ss_pred             CCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCC--CCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Q 008787           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG--KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA  109 (553)
Q Consensus        32 ~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~--~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~  109 (553)
                      .++|..+.+..++.++|.++++++|+++|+++.   +.  ..+..+++||+||.++++++|+.|+++|+++||+|+++++
T Consensus         9 ~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~   85 (549)
T 3g7s_A            9 IGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIP   85 (549)
T ss_dssp             CCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             cCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence            345555556789999999999999999999987   42  1334468999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHH
Q 008787          110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM  189 (553)
Q Consensus       110 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (553)
                      |++++++++|||+++|++++|+++.++.+++.+++++++++++|++......+......  .....++..+..       
T Consensus        86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------  156 (549)
T 3g7s_A           86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK--TGVERVFVVGGE-------  156 (549)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTT--SCCCEEEEETCS-------
T ss_pred             CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhh--CCCcEEEEeCCC-------
Confidence            99999999999999999999999999999999999999999999998876665443322  124455554432       


Q ss_pred             HhhCCceeeeHHHHHhcccccccccCCCC-CCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcE
Q 008787          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV  268 (553)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~  268 (553)
                             ..++.++....... ....... ++++++|+|||||||.||+|++||+++.+.+......+     ++..+|+
T Consensus       157 -------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~  223 (549)
T 3g7s_A          157 -------VNSLSEVMDSGSED-FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDT  223 (549)
T ss_dssp             -------SSCHHHHHHHSCSC-CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCE
T ss_pred             -------CcCHHHHHhcCccc-cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCE
Confidence                   23566666544322 1222333 48999999999999999999999999999988877766     7889999


Q ss_pred             EEEecChHHHHHHHHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 008787          269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (553)
Q Consensus       269 ~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (553)
                      +++.+|++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|++........           
T Consensus       224 ~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-----------  292 (549)
T 3g7s_A          224 IVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT-----------  292 (549)
T ss_dssp             EECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC-----------
T ss_pred             EEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc-----------
Confidence            9999999999998887778999999998876 9999999999999999999999999987643221000           


Q ss_pred             HHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHh----cC---CceEeeeccccC
Q 008787          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTET  420 (553)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~----~~---~~i~~~YG~tE~  420 (553)
                                              .        ..+++|.+++||+++++++.+++.+.    ++   +.+++.||+||+
T Consensus       293 ------------------------~--------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~  340 (549)
T 3g7s_A          293 ------------------------Y--------DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEA  340 (549)
T ss_dssp             ------------------------C--------CCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGG
T ss_pred             ------------------------C--------CccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEecccc
Confidence                                    0        11489999999999999999999887    66   889999999999


Q ss_pred             CCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc---cCC--cc
Q 008787          421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--WF  495 (553)
Q Consensus       421 g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~---~~g--~~  495 (553)
                      +.+++...........++|+|+++++++|+| ++++ .+++.|+.|||+|+||+++.||+++|+.+++.|   .+|  ||
T Consensus       341 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~g-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~  418 (549)
T 3g7s_A          341 CPMVTTNPPLRLDKSTTQGVPMSDIELKVIS-LEDG-RELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFF  418 (549)
T ss_dssp             SSEEEECCGGGGGGTTSCCEECTTCEEEEEC-SSSC-CEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEE
T ss_pred             chhhhcCCccccCcCCCccccCCCCEEEEEe-CCCC-cCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceE
Confidence            9888776655545558899999999999999 3333 456678999999999999999999999999998   678  99


Q ss_pred             ccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       496 ~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|||+|++|+||+|+++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus       419 ~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~  474 (549)
T 3g7s_A          419 RTGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPD  474 (549)
T ss_dssp             EEEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC
T ss_pred             ccCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEc
Confidence            99999999999999999999999997 899999999999999999999999999875

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=1e-68  Score=566.20  Aligned_cols=458  Identities=26%  Similarity=0.335  Sum_probs=379.2

Q ss_pred             CCCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCC
Q 008787           20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE   99 (553)
Q Consensus        20 ~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~   99 (553)
                      .+..+|++......+|.    ..++.++|.++++++|+++|+++.   ++  +  +++||+||.++++++|++|+++|++
T Consensus         4 ~~~~i~~~~~~~~~~p~----~~~l~~~l~~~a~~~p~~~a~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~Gv~   72 (536)
T 3ni2_A            4 QEEFIFRSKLPDIYIPK----NLPLHSYVLENLSNHSSKPCLING---AN--G--DVYTYADVELTARRVASGLNKIGIQ   72 (536)
T ss_dssp             -CCCCBCCSSCCCCCCS----SCCHHHHHTTTGGGSTTSEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccceEEecCCCCCCCCC----CCcHHHHHHHHhhcCCCceEEEEC---CC--C--CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence            44567777766555553    578999999999999999999864   22  2  5899999999999999999999999


Q ss_pred             CCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEe
Q 008787          100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCF  179 (553)
Q Consensus       100 ~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (553)
                      +||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++......+.......  .. .++.+
T Consensus        73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~  149 (536)
T 3ni2_A           73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCV  149 (536)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEES
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEe
Confidence            9999999999999999999999999999999999999999999999999999999988766554433211  12 34444


Q ss_pred             cCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccc
Q 008787          180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF  259 (553)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~  259 (553)
                      +...           .....+.++..... ...+.....++++++|+|||||||.||+|++||+++++.+........ .
T Consensus       150 ~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-~  216 (536)
T 3ni2_A          150 DSAP-----------DGCLHFSELTQADE-NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN-P  216 (536)
T ss_dssp             SCCC-----------TTCEETHHHHTSCG-GGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS-C
T ss_pred             cCCC-----------CCccCHHHHhhccc-cccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc-c
Confidence            4321           13456666665442 223344567899999999999999999999999999887765433211 0


Q ss_pred             cCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhh
Q 008787          260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (553)
Q Consensus       260 ~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~  337 (553)
                      ...+..++++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..|++..       
T Consensus       217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------  289 (536)
T 3ni2_A          217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP-------  289 (536)
T ss_dssp             SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS-------
T ss_pred             cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc-------
Confidence            125678899999999999999865 6678999999999876 9999999999999999999999999886411       


Q ss_pred             chHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeec
Q 008787          338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYG  416 (553)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG  416 (553)
                                                    ..+..+        +++||.+++||+++++++.+++++.+ ++++++.||
T Consensus       290 ------------------------------~~~~~~--------l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG  331 (536)
T 3ni2_A          290 ------------------------------DLDKHD--------LSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYG  331 (536)
T ss_dssp             ------------------------------CGGGSC--------CTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEE
T ss_pred             ------------------------------ccccCC--------CccceEEEECCCCCCHHHHHHHHHHCCCCCcccccc
Confidence                                          111111        24899999999999999999999998 899999999


Q ss_pred             cccCCCceeecc----CCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-c
Q 008787          417 LTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I  491 (553)
Q Consensus       417 ~tE~g~~~~~~~----~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~  491 (553)
                      +||++.+++.+.    .......+++|+|+++++++|+| ++++ .+++.|+.|||+|+|+.++.||+++|+.+.+.| .
T Consensus       332 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~  409 (536)
T 3ni2_A          332 MTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVD-PETG-ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDK  409 (536)
T ss_dssp             CGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred             ccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEe-CCCC-cCCCCCCccEEEEeCcccchhhcCChhHHHhhccC
Confidence            999998766542    12233457899999999999999 4433 556678999999999999999999999999999 7


Q ss_pred             CCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       492 ~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|||+|||+|++|+||+|+++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus       410 ~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~  469 (536)
T 3ni2_A          410 EGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKD  469 (536)
T ss_dssp             TSCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred             CCceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeec
Confidence            999999999999999999999999999998 899999999999999999999999999754

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=6.9e-68  Score=560.17  Aligned_cols=439  Identities=25%  Similarity=0.318  Sum_probs=356.8

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|.++++++|+++|+++.   ++  +..+++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus        17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA   91 (541)
T 1v25_A           17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA   91 (541)
T ss_dssp             CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            368999999999999999999864   22  2347899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++.++.+++.++++.++++++|++......+.... ...+....++.++....          ....++
T Consensus        92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~  160 (541)
T 1v25_A           92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAP----------EGYLAY  160 (541)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCC----------TTCEEH
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCC----------cccccH
Confidence            9999999999999999999999999999999999987765543322 22334455665554311          023456


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhc--hhhhccccCCCCCCcEEEEecChHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAHI  278 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~  278 (553)
                      .+++.....    .....++++++|+|||||||.||+|++||+++.......  ...+     ++..+|++++.+|++|.
T Consensus       161 ~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~  231 (541)
T 1v25_A          161 EEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHV  231 (541)
T ss_dssp             HHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSH
T ss_pred             HHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhh
Confidence            665433211    134567899999999999999999999999998766542  2222     57789999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787          279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (553)
Q Consensus       279 ~g~~~~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (553)
                      +++...+.+++.|+++++.+.  ++..+++.++++++|+++++|+++..|++......                      
T Consensus       232 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------  289 (541)
T 1v25_A          232 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG----------------------  289 (541)
T ss_dssp             HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT----------------------
T ss_pred             hHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC----------------------
Confidence            998767778999999999864  89999999999999999999999999876433211                      


Q ss_pred             hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC-----
Q 008787          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----  431 (553)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-----  431 (553)
                                             ..++++|.+++||+++++++.+++ +.+|+++++.||+||++.+++......     
T Consensus       290 -----------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~  345 (541)
T 1v25_A          290 -----------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESL  345 (541)
T ss_dssp             -----------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred             -----------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceeccccccccccc
Confidence                                   011489999999999999999999 557999999999999998777654321     


Q ss_pred             -----ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEcc
Q 008787          432 -----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP  505 (553)
Q Consensus       432 -----~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~  505 (553)
                           .....++|+|+|+++++|+| +++...+.+.++.|||+|+||.++.||+++|+.+++.| .+|||+|||+|++|+
T Consensus       346 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~  424 (541)
T 1v25_A          346 SEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE  424 (541)
T ss_dssp             CHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT
T ss_pred             CccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC
Confidence                 12347899999999999999 66655554445789999999999999999999999999 499999999999999


Q ss_pred             CCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       506 dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ||+|+++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus       425 dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~  470 (541)
T 1v25_A          425 EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPH  470 (541)
T ss_dssp             TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEEC
T ss_pred             CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecC
Confidence            9999999999999996 899999999999999999999999999865

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=3.7e-68  Score=563.69  Aligned_cols=453  Identities=25%  Similarity=0.307  Sum_probs=332.7

Q ss_pred             CCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 008787           35 PSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW  114 (553)
Q Consensus        35 ~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~  114 (553)
                      |..+....|+.++|.++++++|+++|++...  ++..+  +++||+||.++++++|++|+++|+++||+|+++++|++++
T Consensus        13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~   88 (550)
T 3rix_A           13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF   88 (550)
T ss_dssp             CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT
T ss_pred             CCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH
Confidence            4444556899999999999999999986320  22122  5899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCC
Q 008787          115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (553)
Q Consensus       115 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (553)
                      ++++|||+++|++++|+++.++.+++.++++.++++++|++......+..... ..+....++.++....         .
T Consensus        89 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~  158 (550)
T 3rix_A           89 FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTD---------Y  158 (550)
T ss_dssp             HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSC---------B
T ss_pred             HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHh-hCCCcceEEEEcCCcc---------c
Confidence            99999999999999999999999999999999999999999987766544332 3344556666554321         1


Q ss_pred             ceeeeHHHHHhcccccc------cccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcE
Q 008787          195 IKPYSWDEFLHLGKVNE------MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV  268 (553)
Q Consensus       195 ~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~  268 (553)
                      ....++.++........      .+.....++++++|+|||||||.||+|++||+++...+......+  ...++..+++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~  236 (550)
T 3rix_A          159 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTA  236 (550)
T ss_dssp             TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCE
T ss_pred             cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcE
Confidence            12345555554322211      111222457899999999999999999999999988876654431  1125678899


Q ss_pred             EEEecChHHHHHHHHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 008787          269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (553)
Q Consensus       269 ~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (553)
                      +++.+|++|.+|+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|++..                 
T Consensus       237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-----------------  299 (550)
T 3rix_A          237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST-----------------  299 (550)
T ss_dssp             EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC-----------------
T ss_pred             EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc-----------------
Confidence            9999999999999877888999999999876 9999999999999999999999999886421                 


Q ss_pred             HHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCc-eEeeeccccCCCceee
Q 008787          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTV  426 (553)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~-i~~~YG~tE~g~~~~~  426 (553)
                                          ..+..++        ++||.+++||+++++++.+++.+.++.. +++.||+||++..++.
T Consensus       300 --------------------~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~  351 (550)
T 3rix_A          300 --------------------LIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI  351 (550)
T ss_dssp             --------------------GGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred             --------------------cccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence                                1111112        4899999999999999999999999875 9999999999987776


Q ss_pred             ccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEcc
Q 008787          427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP  505 (553)
Q Consensus       427 ~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~  505 (553)
                      ..... ...+++|+|+|+++++|+| ++++ .+++.|+.|||+|+|++++.||+++|+.+.+.| .+|||+|||+|++|+
T Consensus       352 ~~~~~-~~~~~vG~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~  428 (550)
T 3rix_A          352 TPEGD-DKPGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE  428 (550)
T ss_dssp             CCTTC-CCTTEEEEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT
T ss_pred             CCCCC-CCCCCcccccCCcEEEEEe-CCCC-cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC
Confidence            65543 3448999999999999999 4433 556678999999999999999999999999999 899999999999999


Q ss_pred             CCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       506 dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ||+|+++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus       429 dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~  474 (550)
T 3rix_A          429 DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPD  474 (550)
T ss_dssp             TCCEEEC----------------------------------------
T ss_pred             CceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeec
Confidence            9999999999999997 899999999999999999999999999875

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=4e-67  Score=557.59  Aligned_cols=443  Identities=17%  Similarity=0.162  Sum_probs=368.1

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      ..++.+.++|+++|+++|+++|+++.   +. .+..+++||+||.++++++|++|+++|+++||+|+++++|++++++++
T Consensus        53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~  128 (580)
T 3etc_A           53 ENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM  128 (580)
T ss_dssp             SSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred             ccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            45667779999999999999999986   33 344579999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhh--hhhhccccccccCc-cEEEEecCCchHHHHHHhhCCc
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGI  195 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  195 (553)
                      |||+++|++++|+++.++.+++.+++++++++++|++.+..  ..+.+... ..+.. ..++.++...          ..
T Consensus       129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~  197 (580)
T 3etc_A          129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHA-ECGDIPLKKAKVGGDV----------LE  197 (580)
T ss_dssp             HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHH-HHCSCCCEEEEESSSC----------CT
T ss_pred             HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhh-hCCCcceEEEEeCCcc----------cc
Confidence            99999999999999999999999999999999999987653  33322221 22232 3444444321          12


Q ss_pred             eeeeHHHHHhccccccccc---CCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEe
Q 008787          196 KPYSWDEFLHLGKVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (553)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (553)
                      +..++.+.+..........   ....++++++|+|||||||.||+|.++|.+++..+......+     ++..++++++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  272 (580)
T 3etc_A          198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYTV  272 (580)
T ss_dssp             TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEEC
T ss_pred             ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEEe
Confidence            3556776665443221111   245789999999999999999999999999887776644433     67888999999


Q ss_pred             cChHHHHHHHH-HHHHHHcCcEEEEec---CChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 008787          273 LPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (553)
Q Consensus       273 ~p~~~~~g~~~-~~~~l~~g~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (553)
                      .|+.|..++.. ++.++..|+++++.+   .++..+++.|+++++|+++++|+++..|.+..                  
T Consensus       273 ~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------  334 (580)
T 3etc_A          273 ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------  334 (580)
T ss_dssp             CCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC------------------
T ss_pred             CChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc------------------
Confidence            99999888775 566789999998874   28999999999999999999999999886410                  


Q ss_pred             HHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeecc
Q 008787          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF  428 (553)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~  428 (553)
                                          ...        ..+++||.+++||+++++++.+++.+.+|+++++.||+||++..++...
T Consensus       335 --------------------~~~--------~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~  386 (580)
T 3etc_A          335 --------------------LSH--------YNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFP  386 (580)
T ss_dssp             --------------------C-----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCT
T ss_pred             --------------------ccc--------CCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCC
Confidence                                011        1124899999999999999999999989999999999999987666544


Q ss_pred             CCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEec-----CCccccccCChhhhhhhccCCccccCceEEE
Q 008787          429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTGDIGQI  503 (553)
Q Consensus       429 ~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~-----~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~  503 (553)
                      .. ....+++|+|+|+++++|+| +++.  +++.|+.|||+|+|     +.++.||+++|+.+++.|.+|||+|||+|++
T Consensus       387 ~~-~~~~~~~G~p~~~~~v~ivd-~~g~--~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~  462 (580)
T 3etc_A          387 WM-EPKPGSIGKPTPGYKIELMD-RDGR--LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWM  462 (580)
T ss_dssp             TS-CCCTTCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEE
T ss_pred             CC-CCCCCccccCCCCCEEEEEC-CCCC--CCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEE
Confidence            33 34458999999999999999 6554  55677999999997     7899999999999999999999999999999


Q ss_pred             ccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       504 ~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |+||+|+|+||.||+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus       463 d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~  510 (580)
T 3etc_A          463 DEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPD  510 (580)
T ss_dssp             CTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred             CCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeec
Confidence            999999999999999997 799999999999999999999999999865

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=1.2e-67  Score=558.81  Aligned_cols=437  Identities=15%  Similarity=0.168  Sum_probs=333.2

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|.++++++|+++|+++.    +     +++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus        29 ~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   99 (544)
T 3o83_A           29 DQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA   99 (544)
T ss_dssp             CCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence            478999999999999999999864    3     6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhh----hhhccccccccCccEEEEecCCchHHHHHHhhCCce
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (553)
                      |+++|++++|+++.++.+++.+++++++++++|++.....    ...............++..+....            
T Consensus       100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  167 (544)
T 3o83_A          100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------  167 (544)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred             HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence            9999999999999999999999999999999999876431    111111222234445555544311            


Q ss_pred             eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChH
Q 008787          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (553)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  276 (553)
                      ...+.++...............++++++|+|||||||.||+|++||+++.+.+......+     ++..+|++++.+|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~  242 (544)
T 3o83_A          168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP  242 (544)
T ss_dssp             SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred             ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence            223444444433222233456789999999999999999999999999999988877766     788999999999999


Q ss_pred             HHHHHHH--HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 008787          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (553)
Q Consensus       277 ~~~g~~~--~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      |.+++..  .+.++..|+++++.+. ++..+++.++++++|++.++|+++..|++......                   
T Consensus       243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------  303 (544)
T 3o83_A          243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK-------------------  303 (544)
T ss_dssp             SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-------------------
T ss_pred             eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-------------------
Confidence            9999874  6678999999999876 99999999999999999999999999876432111                   


Q ss_pred             HHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCcc
Q 008787          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (553)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~  433 (553)
                                        .++        ++||.+++||+++++++.+++.+.+++++++.||+||++............
T Consensus       304 ------------------~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  357 (544)
T 3o83_A          304 ------------------DQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ  357 (544)
T ss_dssp             ------------------HHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred             ------------------ccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence                              111        389999999999999999999999999999999999987554443333334


Q ss_pred             ccCccCCCC-CCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEE
Q 008787          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (553)
Q Consensus       434 ~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~  511 (553)
                      ...++|+|+ ++.+++|+| +++.  ++++|+.|||+|+||+++.||+++|+.+.+.| .+|||+|||+|++|+||+|++
T Consensus       358 ~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~  434 (544)
T 3o83_A          358 IFTTQGRPISSDDEIKIVD-EQYR--EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV  434 (544)
T ss_dssp             HHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEE
T ss_pred             ccCCCceecCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEE
Confidence            447899996 899999999 5554  55677999999999999999999999999999 799999999999999999999


Q ss_pred             EecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       512 ~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus       435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~  474 (544)
T 3o83_A          435 VGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVD  474 (544)
T ss_dssp             EEEEC------------------------------------
T ss_pred             EeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccC
Confidence            9999999996 899999999999999999999999999865

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=2.9e-67  Score=552.32  Aligned_cols=434  Identities=23%  Similarity=0.317  Sum_probs=360.8

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      +.+.|+.++|.++++++|+++|+++.   +.    .+++||+||.++++++|++|+++|+++||+|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~   85 (517)
T 3r44_A           13 DKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF   85 (517)
T ss_dssp             GGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence            34789999999999999999999875   22    258999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceee
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (553)
                      |||+++|++++|+++.++.+++.+++++++++++|++......+....... .....++....               ..
T Consensus        86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~  149 (517)
T 3r44_A           86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------AD  149 (517)
T ss_dssp             HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HH
T ss_pred             HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------cc
Confidence            999999999999999999999999999999999999987665543322111 11111111110               01


Q ss_pred             eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHH
Q 008787          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (553)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  278 (553)
                      .+.+.+... ....+.....++++++|+|||||||.||+|++||+++.+.+......+     ++..+|++++.+|++|.
T Consensus       150 ~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~  223 (517)
T 3r44_A          150 SLAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHV  223 (517)
T ss_dssp             HHHHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSH
T ss_pred             cHHHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHH
Confidence            233333322 122234456789999999999999999999999999999988877666     78899999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 008787          279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (553)
Q Consensus       279 ~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (553)
                      +++...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..|.+.....                        
T Consensus       224 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------  279 (517)
T 3r44_A          224 AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA------------------------  279 (517)
T ss_dssp             HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH------------------------
T ss_pred             HHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc------------------------
Confidence            999876666569999998876 9999999999999999999999999886522111                        


Q ss_pred             ccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC-ccccC
Q 008787          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVG  436 (553)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-~~~~~  436 (553)
                                           ...++++|.+++||+++++++.+.+.+. ++++++.||+||+++.++...... ....+
T Consensus       280 ---------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  337 (517)
T 3r44_A          280 ---------------------ELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAG  337 (517)
T ss_dssp             ---------------------HCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTT
T ss_pred             ---------------------cCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCC
Confidence                                 1122489999999999999999999987 999999999999988776554332 34458


Q ss_pred             ccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEeccc
Q 008787          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  516 (553)
Q Consensus       437 ~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~  516 (553)
                      ++|+|.++.++++++ +++.  +++.| .|||+|+|+.++.||+++|+.+.+.|.+|||+|||+|++|+||+|+++||.+
T Consensus       338 ~~G~~~~~~~~~i~d-~~~~--~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d  413 (517)
T 3r44_A          338 SAGRATMFTDVAVRG-DDGV--IREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLK  413 (517)
T ss_dssp             CCBEECTTEEEEEEC-TTSC--EESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGG
T ss_pred             CCCcCCCCeEEEEEC-CCCC--CCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCc
Confidence            899999999999999 5543  33344 7999999999999999999999999999999999999999999999999999


Q ss_pred             CceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          517 NLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       517 d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus       414 d~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~  448 (517)
T 3r44_A          414 DMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPD  448 (517)
T ss_dssp             GCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred             CEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccc
Confidence            99997 899999999999999999999999999764

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=2.3e-67  Score=555.94  Aligned_cols=433  Identities=19%  Similarity=0.190  Sum_probs=357.6

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|.++++++|+++|+++.    +     +++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus        24 ~~tl~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   94 (539)
T 1mdb_A           24 GETFGDLLRDRAAKYGDRIAITCG----N-----THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA   94 (539)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            468999999999999999999864    2     5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhh----hhhccccccccCccEEEEecCCchHHHHHHhhCCce
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (553)
                      |+++|++++|+++.++.+++.++++.++++++|+++....    ..........+....++..++..             
T Consensus        95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  161 (539)
T 1mdb_A           95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE-------------  161 (539)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred             HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence            9999999999999999999999999999999999875321    11111111223344444433221             


Q ss_pred             eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChH
Q 008787          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (553)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  276 (553)
                        .+.++.... ..........++++++++|||||||.||+|++||+++.+.+......+     ++..++++++.+|++
T Consensus       162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~  233 (539)
T 1mdb_A          162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA  233 (539)
T ss_dssp             --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred             --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence              111111111 111122345778999999999999999999999999999888776666     788899999999999


Q ss_pred             HHHHHHH--HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 008787          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (553)
Q Consensus       277 ~~~g~~~--~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      |.+++..  .+.++..|+++++.+. ++..+++.++++++|++.++|+++..|++......                   
T Consensus       234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------  294 (539)
T 1mdb_A          234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR-------------------  294 (539)
T ss_dssp             SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------
T ss_pred             ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-------------------
Confidence            9999874  6778999999999876 99999999999999999999999999875322110                   


Q ss_pred             HHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCcc
Q 008787          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (553)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~  433 (553)
                                                ..+++||.+++||+++++++.+++++.+|+++++.||+||++............
T Consensus       295 --------------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  348 (539)
T 1mdb_A          295 --------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI  348 (539)
T ss_dssp             --------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred             --------------------------CCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence                                      011489999999999999999999998999999999999965333222111123


Q ss_pred             ccCccCCCCCC-eeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEE
Q 008787          434 MVGTAGPVSVY-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (553)
Q Consensus       434 ~~~~~G~~~~~-~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~  511 (553)
                      ..+++|+|+++ .+++|+| +++  .+++.|+.|||+|+||+++.||+++|+.+++.| .+|||+|||+|++|+||+|++
T Consensus       349 ~~~~~G~p~~~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~  425 (539)
T 1mdb_A          349 IVNTQGKPMSPYDESRVWD-DHD--RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV  425 (539)
T ss_dssp             HHHCCCEESSTTCEEEEEC-TTS--CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred             cCCCCCcccCCCceEEEEC-CCC--CCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEE
Confidence            34789999975 5899999 554  455677999999999999999999999999999 799999999999999999999


Q ss_pred             EecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       512 ~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      .||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus       426 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~  465 (539)
T 1mdb_A          426 EGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPD  465 (539)
T ss_dssp             EEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred             eccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccc
Confidence            9999999996 899999999999999999999999999764

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=2.1e-66  Score=544.61  Aligned_cols=426  Identities=21%  Similarity=0.258  Sum_probs=349.6

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      |+++.++|.++++++|+++|+++.   +.  +  +++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus         1 M~tl~~~l~~~a~~~p~~~a~~~~---~~--~--~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   73 (504)
T 1t5h_X            1 MQTVNEMLRRAATRAPDHCALAVP---AR--G--LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (504)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEEET---TT--T--EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEc---CC--C--ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            578999999999999999999864   21  1  6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEE--cchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceee
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (553)
                      |+++|++++|+++.++.+++.+++++++++++++  +......+....    .... ++                     
T Consensus        74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~---------------------  127 (504)
T 1t5h_X           74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-II---------------------  127 (504)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EE---------------------
T ss_pred             HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eE---------------------
Confidence            9999999999999999999999999999999999  665443331111    1111 11                     


Q ss_pred             eHHHHHhccc----ccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCC--CCCcEEEEe
Q 008787          199 SWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF  272 (553)
Q Consensus       199 ~~~~l~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~  272 (553)
                      .+.++.....    ..........++++++++|||||||.||+|++||+++.+.+......+     ++  ..++++++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~  202 (504)
T 1t5h_X          128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL  202 (504)
T ss_dssp             EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred             EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence            1222221110    111112345678999999999999999999999999998887765554     55  778999999


Q ss_pred             cChHHHHHHH-HHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 008787          273 LPLAHILDRV-IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (553)
Q Consensus       273 ~p~~~~~g~~-~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (553)
                      +|++|.+|+. ..+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+......                
T Consensus       203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------  266 (504)
T 1t5h_X          203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG----------------  266 (504)
T ss_dssp             SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------
T ss_pred             cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------
Confidence            9999999985 46778999999999876 99999999999999999999999999875321000                


Q ss_pred             HHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCC
Q 008787          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (553)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~  430 (553)
                                         ..        ..+++||.+++||+++++++.+.+++.++..+++.||+||++ .+....  
T Consensus       267 -------------------~~--------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~--  316 (504)
T 1t5h_X          267 -------------------SS--------LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-NSLYMR--  316 (504)
T ss_dssp             -------------------CC--------CCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-EEEEEE--
T ss_pred             -------------------cc--------ccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-cccccc--
Confidence                               00        011489999999999999999999999999999999999983 333222  


Q ss_pred             CccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEe-cCCccccccCChhhhhhhccCCccccCceEEEccCCcE
Q 008787          431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV  509 (553)
Q Consensus       431 ~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~-~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l  509 (553)
                       ....+++|.|.++.++++++.+++...+++.|+.|||+|+ |+.++.||+++|+.+.+.|.+|||+|||+|++|+||+|
T Consensus       317 -~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l  395 (504)
T 1t5h_X          317 -QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTV  395 (504)
T ss_dssp             -SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCE
T ss_pred             -CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceE
Confidence             1234789999999999999933322356677899999999 99999999999999999999999999999999999999


Q ss_pred             EEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       510 ~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus       396 ~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~  437 (504)
T 1t5h_X          396 RILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLAD  437 (504)
T ss_dssp             EEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEC
T ss_pred             EEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeec
Confidence            999999999997 899999999999999999999999999865

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=2.5e-66  Score=548.81  Aligned_cols=442  Identities=26%  Similarity=0.309  Sum_probs=361.2

Q ss_pred             cccHHH-HHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           41 LNTAWD-IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        41 ~~~l~~-~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      +.++.+ +|.++++++ +++|+++.   +.  +  +++||+||.++++++|+.|++.|+++||+|+++++|++++++++|
T Consensus        24 ~~~l~~~~l~~~~~~~-~~~A~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l   95 (548)
T 2d1s_A           24 SAGTQLRKYMERYAKL-GAIAFTNA---VT--G--VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVI   95 (548)
T ss_dssp             CHHHHHHHHHHHHHHH-TCEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred             cCcHHHHHHHhhhccc-CCceEEEc---CC--C--CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Confidence            468999 898999999 99999863   21  1  589999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeee
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (553)
                      ||+++|++++|+++.++.+++.+++++++++++|++......+..... ..+....++.++....         .....+
T Consensus        96 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~  165 (548)
T 2d1s_A           96 AGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQK-TVTTIKTIVILDSKVD---------YRGYQC  165 (548)
T ss_dssp             HHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHH-HSTTCCEEEETTCSSC---------BTTBCB
T ss_pred             HHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhc-CCCCCCEEEEeCCccc---------cccccc
Confidence            999999999999999999999999999999999999887655433221 1122334555443210         001234


Q ss_pred             HHHHHhcccccccccCCC------CCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEec
Q 008787          200 WDEFLHLGKVNEMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (553)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~------~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (553)
                      |+++.........+....      .++++++++|||||||.||+|++||+++.+.+......+.  ..++..+|++++.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~  243 (548)
T 2d1s_A          166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVV  243 (548)
T ss_dssp             HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECS
T ss_pred             HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEec
Confidence            666654431110111111      2389999999999999999999999999988776654411  12567889999999


Q ss_pred             ChHHHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 008787          274 PLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (553)
Q Consensus       274 p~~~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (553)
                      |++|.+|+.. ++.++ .|+++++.+. +++.+++.|+++++|+++++|+++..|.+..                     
T Consensus       244 p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------------  301 (548)
T 2d1s_A          244 PFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE---------------------  301 (548)
T ss_dssp             CTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCS---------------------
T ss_pred             cHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCc---------------------
Confidence            9999999876 44456 9999998876 9999999999999999999999999886410                     


Q ss_pred             HHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCC
Q 008787          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD  430 (553)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~  430 (553)
                                      ..+..+        ++++|.+++||+++++++.+++++.+ +..+++.||+||++..++.....
T Consensus       302 ----------------~~~~~~--------l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~  357 (548)
T 2d1s_A          302 ----------------LLNKYD--------LSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG  357 (548)
T ss_dssp             ----------------CGGGSC--------CTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT
T ss_pred             ----------------cccccc--------ccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc
Confidence                            011111        14899999999999999999999998 67899999999998877664333


Q ss_pred             CccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcE
Q 008787          431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV  509 (553)
Q Consensus       431 ~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l  509 (553)
                       ....+++|+|+|+++++|+| ++++ .+++.|+.|||+|+|++++.||+++|+.+.+.| .+|||+|||+|++|+||+|
T Consensus       358 -~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l  434 (548)
T 2d1s_A          358 -DDKPGASGKVVPLFKAKVID-LDTK-KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHF  434 (548)
T ss_dssp             -CCCTTCCBEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCE
T ss_pred             -cCCCCCCCccCCCceEEEEe-CCcC-ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeE
Confidence             33457899999999999999 4333 455678999999999999999999999999999 7999999999999999999


Q ss_pred             EEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       510 ~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +++||.+|+|++ +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus       435 ~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~  476 (548)
T 2d1s_A          435 FIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPD  476 (548)
T ss_dssp             EEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred             EEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEc
Confidence            999999999997 899999999999999999999999999864

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.5e-66  Score=544.97  Aligned_cols=428  Identities=23%  Similarity=0.331  Sum_probs=353.1

Q ss_pred             HHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcC
Q 008787           46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS  125 (553)
Q Consensus        46 ~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G  125 (553)
                      ++|.+.++++|+++++...   +.. +  +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|
T Consensus         4 ~l~~~~a~~~p~~~a~~~~---~~~-~--~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   77 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIE---TAA-G--DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG   77 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEE---ETT-C--CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHhCCCCceEEEe---cCC-C--cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence            4688899999999999864   211 1  589999999999999999999999999999999999999999999999999


Q ss_pred             CEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHHHHHh
Q 008787          126 LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH  205 (553)
Q Consensus       126 ~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  205 (553)
                      ++++|+++.++.+++.+++++++++++|++......+....... .  ..+..++....             ..+.+...
T Consensus        78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~  141 (503)
T 4fuq_A           78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA  141 (503)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred             cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence            99999999999999999999999999999987655443222111 1  13333332211             11222111


Q ss_pred             cccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHH-H
Q 008787          206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E  284 (553)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~  284 (553)
                      .. ..........++++++|+|||||||.||+|++||+++.+.+......+     ++..+|++++.+|++|.+|+.. .
T Consensus       142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~  215 (503)
T 4fuq_A          142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS  215 (503)
T ss_dssp             TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred             cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence            11 122233355789999999999999999999999999999988877766     7889999999999999999764 6


Q ss_pred             HHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcC
Q 008787          285 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  363 (553)
Q Consensus       285 ~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (553)
                      +.+++.|+++++.+. +++.+++.++  ++|+++++|+++..|++...                                
T Consensus       216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~--------------------------------  261 (503)
T 4fuq_A          216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--------------------------------  261 (503)
T ss_dssp             HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred             HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence            678889999888876 9999999998  89999999999998864210                                


Q ss_pred             CcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCCC
Q 008787          364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV  443 (553)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~  443 (553)
                           ...        ...+++|.+++||+++++++.+.+.+.++.++++.||+||++..+.... ......+++|+|+|
T Consensus       262 -----~~~--------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~  327 (503)
T 4fuq_A          262 -----LTK--------ETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP  327 (503)
T ss_dssp             -----CST--------TTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred             -----ccc--------cchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence                 000        1124899999999999999999999999999999999999987654332 33444578999999


Q ss_pred             CeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEEEecccCceecC
Q 008787          444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS  522 (553)
Q Consensus       444 ~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~  522 (553)
                      +++++|+| ++++ .+++.|+.|||+|+|++++.||+++|+.+.+.| .+|||+|||+|++|+||+|+++||.||+|++ 
T Consensus       328 ~~~~~i~d-~~~g-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-  404 (503)
T 4fuq_A          328 GVSARVTD-PETG-KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-  404 (503)
T ss_dssp             TCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-
T ss_pred             CeEEEEEE-CCCC-CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-
Confidence            99999999 4433 456678999999999999999999999999999 6999999999999999999999999999997 


Q ss_pred             CceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          523 QGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       523 ~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus       405 ~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~  434 (503)
T 4fuq_A          405 GGFNVYPKEIESEIDAMPGVVESAVIGVPH  434 (503)
T ss_dssp             TTEEECHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred             CCEEECHHHHHHHHHhCCCeeEEEEEEeEc
Confidence            899999999999999999999999999764

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=3.1e-65  Score=542.25  Aligned_cols=440  Identities=19%  Similarity=0.227  Sum_probs=365.6

Q ss_pred             CCcccHHHHHHHHHHc-----CCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCch
Q 008787           39 SDLNTAWDIFSMSVQK-----YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCP  112 (553)
Q Consensus        39 ~~~~~l~~~l~~~a~~-----~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~-gl~~gd~V~l~~~n~~  112 (553)
                      ..++++.++|.+++++     +|+++|+++.   +. ++..+++||+||.++++++|++|.+. |+++||+|+++++|++
T Consensus        35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~  110 (570)
T 3c5e_A           35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP  110 (570)
T ss_dssp             SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred             ccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence            3467788999999998     9999999975   32 23347899999999999999999999 9999999999999999


Q ss_pred             hHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhh
Q 008787          113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (553)
Q Consensus       113 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (553)
                      ++++++|||+++|++++|+++.++.+++.++++.++++++|++......+..... ..+.+..++.++....        
T Consensus       111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------  181 (570)
T 3c5e_A          111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVAS-ECPSLRIKLLVSEKSC--------  181 (570)
T ss_dssp             HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGG-GCTTCCEEEEESSSCC--------
T ss_pred             HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhh-cCCceeEEEEecccCc--------
Confidence            9999999999999999999999999999999999999999999877665533222 2344455555543210        


Q ss_pred             CCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHH--HHhhchhhhccccCCCCCCcEEE
Q 008787          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVYL  270 (553)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~--~~~~~~~~~~~~~~~~~~~~~~~  270 (553)
                        .....+.+++..... ..+.....++++++|+|||||||.||+|++||+ ++.  ..... ..+     ++..+|+++
T Consensus       182 --~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~~  251 (570)
T 3c5e_A          182 --DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIMW  251 (570)
T ss_dssp             --TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEEE
T ss_pred             --cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceEE
Confidence              123456666654322 122234568899999999999999999999999 444  33332 333     678899999


Q ss_pred             EecChHHHHHHHH-HHHHHHcCcEEEEec---CChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 008787          271 SFLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (553)
Q Consensus       271 ~~~p~~~~~g~~~-~~~~l~~g~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (553)
                      +..|++|.+++.. ++.++..|+++++.+   .++..+++.++++++|+++++|+++..|.+..                
T Consensus       252 ~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------  315 (570)
T 3c5e_A          252 TISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD----------------  315 (570)
T ss_dssp             ECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC----------------
T ss_pred             EcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc----------------
Confidence            9999999999874 677899999999885   38999999999999999999999999886410                


Q ss_pred             HHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceee
Q 008787          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV  426 (553)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~  426 (553)
                                            ...        ..++++|.+++||+++++++.+.+.+.+|+++++.||+||++..++.
T Consensus       316 ----------------------~~~--------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~  365 (570)
T 3c5e_A          316 ----------------------LSS--------YKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMV  365 (570)
T ss_dssp             ----------------------TTT--------CCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEEC
T ss_pred             ----------------------ccc--------cccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceec
Confidence                                  000        01248999999999999999999999889999999999999866554


Q ss_pred             ccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEe-----cCCccccccCChhhhhhhccCCccccCceE
Q 008787          427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLTRESIIDGWFHTGDIG  501 (553)
Q Consensus       427 ~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~-----~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g  501 (553)
                      ... .....+++|+|+++++++|+| +++  .+++.|+.|||+|+     |++++.||+++|+.+.+.|.+|||+|||+|
T Consensus       366 ~~~-~~~~~~~vG~p~~~~~v~i~d-~~g--~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg  441 (570)
T 3c5e_A          366 SKT-MKIKPGYMGTAASCYDVQIID-DKG--NVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRG  441 (570)
T ss_dssp             CTT-SCCCTTCCCEECTTCCEEEEC-TTS--CBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEE
T ss_pred             Ccc-cccCCCcccccCCCceEEEEC-CCC--CCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeE
Confidence            432 233458999999999999999 655  45567799999999     999999999999999999999999999999


Q ss_pred             EEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       502 ~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ++|+||+|++.||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus       442 ~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~  491 (570)
T 3c5e_A          442 IKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPD  491 (570)
T ss_dssp             EECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred             EEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeC
Confidence            99999999999999999997 899999999999999999999999999764

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=7.2e-66  Score=541.46  Aligned_cols=428  Identities=23%  Similarity=0.305  Sum_probs=325.2

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ...|+.++|+++++++||++|+++.    +     +++||+||.++++++|++|+++|+++||+|+++++|++++++++|
T Consensus         4 ~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l   74 (509)
T 3ivr_A            4 HDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG   74 (509)
T ss_dssp             TCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4589999999999999999999864    3     689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeee
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (553)
                      ||+++|++++|+++.++.+++.+++++++++++|++......+.... ........++.+++..              ..
T Consensus        75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~~  139 (509)
T 3ivr_A           75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGS--------------GP  139 (509)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCC--------------SS
T ss_pred             HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCC--------------cC
Confidence            99999999999999999999999999999999999988766543333 2334555666655421              12


Q ss_pred             HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHH
Q 008787          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (553)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  279 (553)
                      +.++.........+.....++++++|+|||||||.||+|++||+++.+.+......+     ++..+|++++.+|++|.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  214 (509)
T 3ivr_A          140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT  214 (509)
T ss_dssp             CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred             hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence            222222111223334456789999999999999999999999999999988877766     788999999999999999


Q ss_pred             HHHHHHHHHHc-CcEEEEecCChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 008787          280 DRVIEEYFFRR-GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (553)
Q Consensus       280 g~~~~~~~l~~-g~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (553)
                      |+...+.++.. |+++++...++..+++.++++++|++.++|+++..|++...                           
T Consensus       215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~---------------------------  267 (509)
T 3ivr_A          215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA---------------------------  267 (509)
T ss_dssp             HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------
T ss_pred             HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------
Confidence            99876665544 44455444599999999999999999999999999875320                           


Q ss_pred             cCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCCccccCc
Q 008787          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGT  437 (553)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~  437 (553)
                                  ..++        +++|.++.+|++   ++.+.+.+.+ ++++++.||+||++++++.......  ..+
T Consensus       268 ------------~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~  322 (509)
T 3ivr_A          268 ------------PAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS  322 (509)
T ss_dssp             ------------GGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred             ------------ccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence                        0011        389999999987   8888888888 9999999999999987766543322  245


Q ss_pred             cCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEecc--
Q 008787          438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK--  515 (553)
Q Consensus       438 ~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~--  515 (553)
                      +|+|+++++++|+| +++  .+++.|+.|||+|+|++++.||+++|+.+.+.|.+|||+|||+|++|+||+|++.||.  
T Consensus       323 ~G~p~~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~  399 (509)
T 3ivr_A          323 AGRPLFWRTVAVVD-AED--RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE  399 (509)
T ss_dssp             CCEECTTCEEEEEC-TTS--CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC--
T ss_pred             ccccCCCcEEEEEC-CCC--CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCc
Confidence            89999999999999 554  4566779999999999999999999999999999999999999999999999999999  


Q ss_pred             cCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          516 KNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       516 ~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|+|++ +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus       400 ~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~  435 (509)
T 3ivr_A          400 KELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPD  435 (509)
T ss_dssp             -------------------------------------
T ss_pred             ceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccc
Confidence            999996 899999999999999999999999999875

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=7.6e-66  Score=548.04  Aligned_cols=417  Identities=20%  Similarity=0.206  Sum_probs=315.0

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      ....++.++|.++++++|+++|+++.    +     +++||+||.++++++|++|+++|+++||+|+++++|++++++++
T Consensus        72 ~~~~~l~~~l~~~a~~~pd~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~  142 (570)
T 4gr5_A           72 PAGACVHELFEAQAARAPDAVALLHE----A-----DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL  142 (570)
T ss_dssp             CCSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CccCCHHHHHHHHHHHCCCCeEEECC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            34679999999999999999999864    3     58999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceee
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (553)
                      |||+++|++++|+++.++.+++.+++++++++++|++......+        .....+...+...               
T Consensus       143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~---------------  199 (570)
T 4gr5_A          143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEAA---------------  199 (570)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC------------------
T ss_pred             HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeecccc---------------
Confidence            99999999999999999999999999999999999997654432        1111221111100               


Q ss_pred             eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHH
Q 008787          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (553)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  278 (553)
                             .............++++++|+|||||||.||+|++||+++.+.+... ..+     ++..++++++.+|++|.
T Consensus       200 -------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~~~  266 (570)
T 4gr5_A          200 -------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVSWD  266 (570)
T ss_dssp             -----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTTSS
T ss_pred             -------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCccHH
Confidence                   00011122334578899999999999999999999999998776542 222     67889999999999987


Q ss_pred             HHHHHHHHHHHcCcEEEEecC---ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 008787          279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (553)
Q Consensus       279 ~g~~~~~~~l~~g~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (553)
                      .+...++.+++.|+++++.+.   ++..+++.++++++|++.++|+++..|++....                       
T Consensus       267 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----------------------  323 (570)
T 4gr5_A          267 AFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE-----------------------  323 (570)
T ss_dssp             THHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----------------------
T ss_pred             HHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----------------------
Confidence            666667778999999998763   899999999999999999999999998652110                       


Q ss_pred             HhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCC---
Q 008787          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---  431 (553)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~---  431 (553)
                                               ..++||.+++||+++++++.+.+.+.+ ++++++.||+||++++++......   
T Consensus       324 -------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~  378 (570)
T 4gr5_A          324 -------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDL  378 (570)
T ss_dssp             -------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGT
T ss_pred             -------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeeccccc
Confidence                                     014899999999999999998888877 889999999999988776543322   


Q ss_pred             ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cC--------CccccCceEE
Q 008787          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID--------GWFHTGDIGQ  502 (553)
Q Consensus       432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~--------g~~~TGD~g~  502 (553)
                      .....++|+|+++++++|+| +++  .+++.|+.|||+|+|++++.||+++|+.+.+.| .+        |||+|||+|+
T Consensus       379 ~~~~~~iG~p~~~~~v~i~d-~~~--~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~  455 (570)
T 4gr5_A          379 SGTALPIGVPLAGKRAYVLD-DDL--KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLAR  455 (570)
T ss_dssp             TSSSCCCBEECTTEEEEEEC-TTS--CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEE
T ss_pred             CCCccccceeeCCCEEEEEC-CCC--CCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEE
Confidence            22335689999999999999 554  455677999999999999999999999999998 33        6999999999


Q ss_pred             EccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       503 ~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|+||+|+|+||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus       456 ~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~  504 (570)
T 4gr5_A          456 RRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDS  504 (570)
T ss_dssp             ECTTSCEEEEEC--------------------------------------
T ss_pred             ECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeC
Confidence            9999999999999999997 899999999999999999999999999764

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=1.9e-65  Score=552.16  Aligned_cols=453  Identities=17%  Similarity=0.210  Sum_probs=367.0

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ..+++.++|+++++++|+++|+++.   +...+..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++|
T Consensus        74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l  150 (652)
T 1pg4_A           74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML  150 (652)
T ss_dssp             EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3567889999999999999999985   3333455799999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhh---------hhhcccccc-ccCccEEEEecCCchHHHHH
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRS-AQRLRVMVCFTSLTAEQKEM  189 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  189 (553)
                      ||+++|++++|+++.++++++.+++++++++++|+++....         .+.+..... ...+..+++++......   
T Consensus       151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---  227 (652)
T 1pg4_A          151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI---  227 (652)
T ss_dssp             HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC---
T ss_pred             HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc---
Confidence            99999999999999999999999999999999999876422         111111110 01344556554321000   


Q ss_pred             HhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHh-hchhhhccccCCCCCCcE
Q 008787          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS-GVDLFLDQFEDKMTVDDV  268 (553)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~-~~~~~~~~~~~~~~~~~~  268 (553)
                       .........|++++..... ..+.....++++++|+|||||||.||||++||++++.... .....+     ++..+|+
T Consensus       228 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~  300 (652)
T 1pg4_A          228 -DWQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDI  300 (652)
T ss_dssp             -CCCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCE
T ss_pred             -cccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCE
Confidence             0000123567777654321 1233345678999999999999999999999999886653 333334     6788999


Q ss_pred             EEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHH
Q 008787          269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (553)
Q Consensus       269 ~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~  342 (553)
                      +++..|++|..|+.. ++.++..|+++++.++     ++..+++.++++++|+++++|+++..|.+.....         
T Consensus       301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------  371 (652)
T 1pg4_A          301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA---------  371 (652)
T ss_dssp             EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG---------
T ss_pred             EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc---------
Confidence            999999999999854 6778999999999864     7899999999999999999999999886421100         


Q ss_pred             HHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC---CceEeeecccc
Q 008787          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE  419 (553)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~i~~~YG~tE  419 (553)
                                                ....        .+++||.+++||+++++++.+++.+.+|   +++++.||+||
T Consensus       372 --------------------------~~~~--------~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE  417 (652)
T 1pg4_A          372 --------------------------IEGT--------DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE  417 (652)
T ss_dssp             --------------------------TTTC--------CCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGG
T ss_pred             --------------------------cccC--------CcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcc
Confidence                                      0011        1248999999999999999999999888   89999999999


Q ss_pred             CCCceeeccCC-CccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEec--CCccccccCChhhhhhhc---cCC
Q 008787          420 TCGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDG  493 (553)
Q Consensus       420 ~g~~~~~~~~~-~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~--~~~~~gy~~~~~~~~~~~---~~g  493 (553)
                      +++.++..... .....+++|+|++|++++|+| +++.  +++.|+.|||+|+|  |.++.||+++++.+.+.+   .+|
T Consensus       418 ~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~--~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g  494 (652)
T 1pg4_A          418 TGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGH--PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN  494 (652)
T ss_dssp             GSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCC--BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTT
T ss_pred             cccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCC--CcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCC
Confidence            99876655432 234558999999999999999 6554  45567899999999  789999999999988876   389


Q ss_pred             ccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       494 ~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ||+|||+|++|+||+|+|+||.||+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus       495 ~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~  552 (652)
T 1pg4_A          495 MYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPH  552 (652)
T ss_dssp             SEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEE
T ss_pred             EEECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEc
Confidence            9999999999999999999999999998 799999999999999999999999999764

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=7e-65  Score=536.51  Aligned_cols=437  Identities=21%  Similarity=0.245  Sum_probs=350.5

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      ..++++.++|.++++ +|+++|+++.    +     +++||+||.++++++|++|+++|+++||+|+++++|++++++++
T Consensus        21 ~~~~~~~~~l~~~~~-~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~   90 (529)
T 2v7b_A           21 ALFNFAAYLFRLNET-RAGKTAYIDD----T-----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF   90 (529)
T ss_dssp             -CCCHHHHHHHHTGG-GTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred             cceeHHHHHHHhhhc-cCCceEEEeC----C-----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence            456779999999999 9999999853    2     48999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCc-cEEEEecCCchHHHHHHhhCCcee
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGIKP  197 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  197 (553)
                      |||+++|++++|+++.++.+++.+++++++++++|++......+..... ..... ..++.++.....        ....
T Consensus        91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~  161 (529)
T 2v7b_A           91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRESE--------PRLA  161 (529)
T ss_dssp             HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC--------------CC
T ss_pred             HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEecccccc--------cccc
Confidence            9999999999999999999999999999999999999876654433221 11122 334443332110        0012


Q ss_pred             eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhH-HHHHhhchhhhccccCCCCCCcEEEEecChH
Q 008787          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (553)
Q Consensus       198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  276 (553)
                      ..++++..... .........++++++++|||||||.||+|++||+++ ..........+     ++..+|++++.+|++
T Consensus       162 ~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~~  235 (529)
T 2v7b_A          162 PLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLF  235 (529)
T ss_dssp             CBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCTT
T ss_pred             cchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecHH
Confidence            24666654321 122233457889999999999999999999999999 56555544333     678899999999999


Q ss_pred             HHHHHHH-HHHHHHcCcEEEEec-C-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 008787          277 HILDRVI-EEYFFRRGASVGYYH-G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (553)
Q Consensus       277 ~~~g~~~-~~~~l~~g~~~~~~~-~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      |.+++.. .+.++..|+++++.+ . ++..+++.++++++|+++++|+++..+++...     .                
T Consensus       236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----~----------------  294 (529)
T 2v7b_A          236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN-----L----------------  294 (529)
T ss_dssp             SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-----C----------------
T ss_pred             HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-----c----------------
Confidence            9999875 556899999998873 3 89999999999999999999999988753100     0                


Q ss_pred             HHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCcc
Q 008787          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (553)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~  433 (553)
                                  ....            ..++|.+++||+++++++.+.+++.+|+++++.||+||++.+.+...... .
T Consensus       295 ------------~~~~------------~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~  349 (529)
T 2v7b_A          295 ------------PARA------------DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-V  349 (529)
T ss_dssp             ------------CCGG------------GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-C
T ss_pred             ------------cccc------------CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-C
Confidence                        0000            02799999999999999999999989999999999999977666554433 3


Q ss_pred             ccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEe
Q 008787          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (553)
Q Consensus       434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~G  513 (553)
                      ..+++|+|+++++++|+| +++.  ++++|+.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+||+|++.|
T Consensus       350 ~~~~~G~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~G  426 (529)
T 2v7b_A          350 EYGTTGRPVPGYEIELRD-EAGH--AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAG  426 (529)
T ss_dssp             CTTSCCEECTTCEEEEEC-TTSC--BCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEE
T ss_pred             ccCCcccCCCCCEEEEEC-CCCC--CCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeC
Confidence            447899999999999999 6554  5567799999999999999999999999999999999999999999999999999


Q ss_pred             cccCceecCCceeecchhHHHHHhcCcCcceEEEEec
Q 008787          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYS  550 (553)
Q Consensus       514 R~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~  550 (553)
                      |.+|+|++ +|++|+|.+||++|.+||+|.+|+|+|.
T Consensus       427 R~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~  462 (529)
T 2v7b_A          427 RSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGV  462 (529)
T ss_dssp             EGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEE
T ss_pred             ccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEe
Confidence            99999997 8999999999999999999999999986

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=3.8e-65  Score=549.89  Aligned_cols=453  Identities=17%  Similarity=0.210  Sum_probs=366.7

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAM  118 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~-~~gl~~gd~V~l~~~n~~~~~~~~  118 (553)
                      ..+++.++|+++++++|+++|+++.   +...+..+++||+||.+++.++|+.|+ ++|+++||+|+++++|++++++++
T Consensus        80 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~  156 (663)
T 1ry2_A           80 QLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITL  156 (663)
T ss_dssp             EECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHH
T ss_pred             CccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Confidence            3578999999999999999999985   333345579999999999999999999 999999999999999999999999


Q ss_pred             HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhh---------hhhccccccccCccEEEEecCCchHHHHH
Q 008787          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEM  189 (553)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (553)
                      |||+++|++++|+++.++.+++.+++++++++++|+++....         .+.+.. ...+.+..+++++......   
T Consensus       157 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vi~~~~~~~~~---  232 (663)
T 1ry2_A          157 LAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDAL-RETPGVRHVLVYRKTNNPS---  232 (663)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHT-TSCTTCCEEEEECSSCCSS---
T ss_pred             HHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHH-HhCCCCceEEEEecCCCCc---
Confidence            999999999999999999999999999999999999876432         111111 1223445566654321000   


Q ss_pred             HhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhh-chhhhccccCCCCCCcE
Q 008787          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDV  268 (553)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~  268 (553)
                      ..........|.++..... ...+.....++++++|+|||||||.||||++||.+++..... ....+     ++..+|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~  306 (663)
T 1ry2_A          233 VAFHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDV  306 (663)
T ss_dssp             CCCCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCE
T ss_pred             cccCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcE
Confidence            0000112456777765432 222334457889999999999999999999999998766543 33333     6788999


Q ss_pred             EEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHH
Q 008787          269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (553)
Q Consensus       269 ~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~  342 (553)
                      +++..|++|..|+.. ++.++..|+++++.++     ++..+++.|+++++|+++++|++++.|.+....          
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----------  376 (663)
T 1ry2_A          307 FFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS----------  376 (663)
T ss_dssp             EEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT----------
T ss_pred             EEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc----------
Confidence            999999999999854 6778999999999864     789999999999999999999999887531100          


Q ss_pred             HHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC---CceEeeecccc
Q 008787          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE  419 (553)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~i~~~YG~tE  419 (553)
                                               ..+..        .+++||.+++||+++++++.+++.+.+|   +++++.||+||
T Consensus       377 -------------------------~~~~~--------~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE  423 (663)
T 1ry2_A          377 -------------------------YIENH--------SLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTE  423 (663)
T ss_dssp             -------------------------SSSSC--------CCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTT
T ss_pred             -------------------------ccccC--------CcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCcc
Confidence                                     00011        1248999999999999999999999887   89999999999


Q ss_pred             CCCceeeccC--CCccccCccCCCCCCeeEEEeecC-CCCCCCCCC-CCCCeEEEec--CCccccccCChhhhhhhc---
Q 008787          420 TCGPTTVCFP--DEMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDD-PPCGEVCVRG--KTLFSGYYKNPDLTRESI---  490 (553)
Q Consensus       420 ~g~~~~~~~~--~~~~~~~~~G~~~~~~~v~i~~~~-~~~~~~~~~-~~~Gei~v~~--~~~~~gy~~~~~~~~~~~---  490 (553)
                      +++.++....  ......+++|+|++|++++|+| + ++.  +++. |+.|||+|+|  |+++.||+++++.+.+.|   
T Consensus       424 ~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~--~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~  500 (663)
T 1ry2_A          424 SGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGE--ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNP  500 (663)
T ss_dssp             TCSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTT--CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSS
T ss_pred             ccCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCC--cCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcC
Confidence            9877666543  2234558999999999999999 5 443  3334 7899999999  589999999999998876   


Q ss_pred             cCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       491 ~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      .+|||+|||+|++|+||+|+|+||.||+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus       501 ~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~  561 (663)
T 1ry2_A          501 YPGYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFND  561 (663)
T ss_dssp             STTSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCC
T ss_pred             CCCEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEec
Confidence            3799999999999999999999999999997 799999999999999999999999999875

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=1.8e-64  Score=540.14  Aligned_cols=414  Identities=19%  Similarity=0.161  Sum_probs=347.5

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|.++++++|+++|+++.   +      +++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus        26 ~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~la   96 (620)
T 4dg8_A           26 HPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLA   96 (620)
T ss_dssp             SCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            578999999999999999999874   3      5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++.++.+++.++++++++++++++........        .....                      .+
T Consensus        97 ilkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--------~~~~~----------------------~~  146 (620)
T 4dg8_A           97 ILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--------GLPCV----------------------PV  146 (620)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--------TSCEE----------------------EG
T ss_pred             HHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--------CCcee----------------------ee
Confidence            9999999999999999999999999999999997654332110        11110                      00


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                      ..+.  ............++++++++|||||||.||||+++|+++.+.+.. ...+     .+..+++++...|++|..+
T Consensus       147 ~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~~  218 (620)
T 4dg8_A          147 RHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDAA  218 (620)
T ss_dssp             GGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTHH
T ss_pred             ccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHHH
Confidence            0000  001111223346889999999999999999999999999887765 2333     6788999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEecC---ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 008787          281 RVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (553)
Q Consensus       281 ~~~~~~~l~~g~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (553)
                      +...+.++..|+++++.+.   ++..+++.++++++|+++++|+++..|++...                          
T Consensus       219 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------------------  272 (620)
T 4dg8_A          219 TLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP--------------------------  272 (620)
T ss_dssp             HHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG--------------------------
T ss_pred             HHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh--------------------------
Confidence            8888889999999998752   89999999999999999999999998864100                          


Q ss_pred             ccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCC---cc
Q 008787          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---MC  433 (553)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~---~~  433 (553)
                                            ..+++||.+++||+++++++.+.+.+.+ ++++++.||+||++..++......   ..
T Consensus       273 ----------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~  330 (620)
T 4dg8_A          273 ----------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEE  330 (620)
T ss_dssp             ----------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGS
T ss_pred             ----------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCC
Confidence                                  0014899999999999988888776665 889999999999998766543222   23


Q ss_pred             ccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccC--------CccccCceEEEcc
Q 008787          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQILP  505 (553)
Q Consensus       434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~--------g~~~TGD~g~~~~  505 (553)
                      ...++|+|+++++++|+| +++. ..++.|+.|||+|+|+.++.||+++|+.|++.|.+        +||+|||+|++++
T Consensus       331 ~~~~iG~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~  408 (620)
T 4dg8_A          331 DDIPIGKAIAGTAVLLLD-EHGQ-EIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDE  408 (620)
T ss_dssp             SSCCCBEECTTEEEEEEC-TTSC-BCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECT
T ss_pred             CCCCceecccCcEEEEEC-ccCC-CCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECC
Confidence            346899999999999999 5544 33556799999999999999999999999999943        7999999999999


Q ss_pred             CCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       506 dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ||+|+|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++
T Consensus       409 dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~  454 (620)
T 4dg8_A          409 QGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRER  454 (620)
T ss_dssp             TSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred             CCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeC
Confidence            9999999999999998 899999999999999999999999998753

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=3.2e-64  Score=533.78  Aligned_cols=415  Identities=20%  Similarity=0.255  Sum_probs=345.6

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|.++++++|+++|+++.    +     +++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus        38 ~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA  108 (563)
T 1amu_A           38 DKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILA  108 (563)
T ss_dssp             TCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            478999999999999999999864    3     5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++.++.+++.+++++++++++|++......+....     ....+..+....                +
T Consensus       109 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~----------------~  167 (563)
T 1amu_A          109 VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDT----------------I  167 (563)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCST----------------T
T ss_pred             HHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchh----------------h
Confidence            9999999999999999999999999999999999987654432211     111222222110                0


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                          ... .......+..++++++|+|||||||.||+|++||+++.+.+......+     ++..+|++++..|++|..+
T Consensus       168 ----~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  237 (563)
T 1amu_A          168 ----KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDAS  237 (563)
T ss_dssp             ----TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHH
T ss_pred             ----ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHH
Confidence                000 011112334678999999999999999999999999998877766555     7788999999999999998


Q ss_pred             HHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (553)
Q Consensus       281 ~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (553)
                      +...+.+++.|+++++.+.    ++..+++.++++++|++.++|+++..|.+.                           
T Consensus       238 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---------------------------  290 (563)
T 1amu_A          238 VWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE---------------------------  290 (563)
T ss_dssp             HHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT---------------------------
T ss_pred             HHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc---------------------------
Confidence            8777788999999998764    889999999999999999999998765310                           


Q ss_pred             hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC--ccc
Q 008787          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MCM  434 (553)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~--~~~  434 (553)
                                              ..+++|.+++||+++++++.+.+.+  .+++++.||+||++..++......  ...
T Consensus       291 ------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~  344 (563)
T 1amu_A          291 ------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGH  344 (563)
T ss_dssp             ------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCS
T ss_pred             ------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCC
Confidence                                    0148999999999999999999877  478999999999987766543322  223


Q ss_pred             cCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhcc-------CCccccCceEEEccCC
Q 008787          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG  507 (553)
Q Consensus       435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~-------~g~~~TGD~g~~~~dG  507 (553)
                      ..++|+|+|+++++|+| +++.  +++.|+.|||+|+|++++.||+++|+.|++.|.       ++||+|||+|++|+||
T Consensus       345 ~~~vG~p~~~~~v~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG  421 (563)
T 1amu_A          345 SVPIGAPIQNTQIYIVD-ENLQ--LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDG  421 (563)
T ss_dssp             SCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTS
T ss_pred             CCcccceeCCCEEEEEC-CCcC--CCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCC
Confidence            46899999999999999 5554  556679999999999999999999999999883       2499999999999999


Q ss_pred             cEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|+++||.+|+|++ +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus       422 ~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~  465 (563)
T 1amu_A          422 NIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKD  465 (563)
T ss_dssp             CEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEC
T ss_pred             eEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeec
Confidence            99999999999997 899999999999999999999999999864

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=2.3e-64  Score=530.10  Aligned_cols=419  Identities=17%  Similarity=0.214  Sum_probs=355.0

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~-gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      +|+.++|+++++++|+++|+++.    +     +++||+||.++++++|++|.++ |.++|++|+++++|++++++++||
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA   71 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG   71 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence            47899999999999999999864    3     6899999999999999999986 889999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++.++.+++.++++.++++++|++.........       .                     .....++
T Consensus        72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~-------~---------------------~~~~~~~  123 (511)
T 3e7w_A           72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG-------Q---------------------QIQTVSA  123 (511)
T ss_dssp             HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC-------C---------------------SSCEEEH
T ss_pred             HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc-------c---------------------ccceecH
Confidence            99999999999999999999999999999999987653221100       0                     0113345


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                      .++...............++++++|+|||||||.||+|++||+++.+.+......+     ++..++++++.+|++|.++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  198 (511)
T 3e7w_A          124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS  198 (511)
T ss_dssp             HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred             hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence            55554433322333445788999999999999999999999999999888776666     7888999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (553)
Q Consensus       281 ~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (553)
                      +...+.++..|+++++.+.    ++..+++.++++++|++.++|+++..+++...                         
T Consensus       199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------  253 (511)
T 3e7w_A          199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG-------------------------  253 (511)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred             HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence            8778889999999998764    89999999999999999999999988753110                         


Q ss_pred             hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCC----
Q 008787          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----  431 (553)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~----  431 (553)
                                  ...        ..++++|.+++||+++++++.+.+.+.+ ++++++.||+||++..++......    
T Consensus       254 ------------~~~--------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  313 (511)
T 3e7w_A          254 ------------FSQ--------DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS  313 (511)
T ss_dssp             ------------CST--------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred             ------------ccc--------ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence                        000        1124899999999999999999999998 899999999999988766543221    


Q ss_pred             ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc--cCC--ccccCceEEEccCC
Q 008787          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNG  507 (553)
Q Consensus       432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~--~~g--~~~TGD~g~~~~dG  507 (553)
                      .....++|+|+|+++++|+| +++  .++++|+.|||+|+||+++.||+++|+.+++.|  .+|  ||+|||+|++ +||
T Consensus       314 ~~~~~~~G~~~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG  389 (511)
T 3e7w_A          314 RSESLPVGFAKPDMNIFIMD-EEG--QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDG  389 (511)
T ss_dssp             TCSSCCCBEECTTCEEEEEC-TTS--CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETT
T ss_pred             cCCcCCCcceeCCCEEEEEC-CCC--CCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCC
Confidence            12235799999999999999 554  456678999999999999999999999999998  344  7999999999 599


Q ss_pred             cEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|+++||.+|+|++ +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus       390 ~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~  433 (511)
T 3e7w_A          390 QIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQP  433 (511)
T ss_dssp             EEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECS
T ss_pred             eEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcC
Confidence            99999999999997 899999999999999999999999999764

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=1.6e-64  Score=569.99  Aligned_cols=474  Identities=26%  Similarity=0.342  Sum_probs=346.1

Q ss_pred             ccccCCCCCCCCCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHH
Q 008787           10 EGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQI   89 (553)
Q Consensus        10 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~l   89 (553)
                      +.-+..++++....+|++......+|    ...++.++|.++++++|+++|+++.   +.  +  +++||+||.++++++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~tl~~~l~~~a~~~pd~~Al~~~---~~--~--~~~TY~eL~~~~~~l  101 (979)
T 3tsy_A           33 QVMEKQSNNNNSDVIFRSKLPDIYIP----NHLSLHDYIFQNISEFATKPCLING---PT--G--HVYTYSDVHVISRQI  101 (979)
T ss_dssp             ------------CCCBCCSSCCCCCC----TTSCHHHHHTTTGGGTTTSEEEEET---TT--C--CEEEHHHHHHHHHHH
T ss_pred             HhhhhcccCCCCCceeecCCCCCCCC----CCCCHHHHHHHHHHhCCCCeEEEEC---CC--C--cEEEHHHHHHHHHHH
Confidence            33344555666778888876554444    3589999999999999999999864   21  2  589999999999999


Q ss_pred             HHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhcccccc
Q 008787           90 VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS  169 (553)
Q Consensus        90 a~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~  169 (553)
                      |+.|+++|+++||+|+++++|++++++++|||+++|++++|++|.++++++.+++++++++++|++......+.......
T Consensus       102 A~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~  181 (979)
T 3tsy_A          102 AANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD  181 (979)
T ss_dssp             HHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS
T ss_pred             HHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999987765543332211


Q ss_pred             ccCccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccc--cccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHH
Q 008787          170 AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT  247 (553)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~  247 (553)
                         ...++.+++...      ........++.++......  ...+.....++++++|+|||||||.||+|++||+++++
T Consensus       182 ---~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~  252 (979)
T 3tsy_A          182 ---GVVIVCIDDNES------VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVT  252 (979)
T ss_dssp             ---CCEEEECCCCTT------SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHH
T ss_pred             ---CceEEEeCCccc------ccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHH
Confidence               123444443211      0111234556655543322  12233456789999999999999999999999999998


Q ss_pred             HHhhchhhhccccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHH
Q 008787          248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEK  325 (553)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~  325 (553)
                      .+........ ....+..++++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..
T Consensus       253 ~~~~~~~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~  331 (979)
T 3tsy_A          253 SVAQQVDGEN-PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLA  331 (979)
T ss_dssp             HHHHHHCSSS-CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHH
T ss_pred             HHHHHHHhhc-ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHH
Confidence            8765433211 0125678999999999999999965 5668999999999876 99999999999999999999999998


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHH
Q 008787          326 IHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRV  405 (553)
Q Consensus       326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~  405 (553)
                      |++...                                     ....+        +++||.+++||+++++++.+++.+
T Consensus       332 l~~~~~-------------------------------------~~~~~--------l~~lr~~~~gg~~l~~~~~~~~~~  366 (979)
T 3tsy_A          332 IAKSSE-------------------------------------TEKYD--------LSSIRVVKSGAAPLGKELEDAVNA  366 (979)
T ss_dssp             HHHCGG-------------------------------------GGTSC--------CTTCCEEEESSCCCCSSHHHHHHH
T ss_pred             HHhCcc-------------------------------------ccCCC--------ccceEEEEEcCCCCCHHHHHHHHH
Confidence            865211                                     11111        248999999999999999999999


Q ss_pred             hc-CCceEeeeccccCCCceeecc----CCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCcccccc
Q 008787          406 TC-CAFLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY  480 (553)
Q Consensus       406 ~~-~~~i~~~YG~tE~g~~~~~~~----~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~  480 (553)
                      .+ ++++++.||+||++.+++...    .......+++|+|+++++++|+| ++++ .+++.|+.|||+|+|+.++.||+
T Consensus       367 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~g~~v~~GY~  444 (979)
T 3tsy_A          367 KFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKGYL  444 (979)
T ss_dssp             HCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTSC-CBCCTTCCEEEEEESTTSCSEET
T ss_pred             HCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEe-CCCC-CCCCCCCccEEEEECCCcccccc
Confidence            88 899999999999998766542    12233457899999999999999 4433 45667899999999999999999


Q ss_pred             CChhhhhhhc-cCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          481 KNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       481 ~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ++|+.+.+.| .+|||+|||+|++|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus       445 ~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~  516 (979)
T 3tsy_A          445 NNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKE  516 (979)
T ss_dssp             TCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-----------------------------------
T ss_pred             CChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecc
Confidence            9999999999 7999999999999999999999999999997 799999999999999999999999999764

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=9.6e-65  Score=533.32  Aligned_cols=420  Identities=18%  Similarity=0.191  Sum_probs=349.1

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~  121 (553)
                      +|+.++|+++++++|+++|+++.    +     +++||+||.++++++|++|.++|+++||+|+++++|++++++++|||
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~   71 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWR----D-----AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC   71 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCceEEEeC----C-----ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            47899999999999999999874    3     58999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHH
Q 008787          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (553)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (553)
                      +++|++++|+++.++.+++.++++.+++++++++.......        .. ..++...                  .+.
T Consensus        72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~-~~~~~~~------------------~~~  124 (512)
T 3fce_A           72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LP-VRIVSED------------------NLK  124 (512)
T ss_dssp             HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CS-SEEEETH------------------HHH
T ss_pred             HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------cc-cceechh------------------hhh
Confidence            99999999999999999999999999999999875432110        00 1111110                  111


Q ss_pred             HHHh-cccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          202 EFLH-LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       202 ~l~~-~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                      .+.. .......+.....++++++++|||||||.||+|++||+++.+.+......+     ++..+|++++.+|++|.++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  199 (512)
T 3fce_A          125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS  199 (512)
T ss_dssp             HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred             hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence            1111 111122233445789999999999999999999999999999888877666     7889999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (553)
Q Consensus       281 ~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (553)
                      +...+.+++.|+++++.+.    ++..+++.++++++|++.++|+++..++....                         
T Consensus       200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------  254 (512)
T 3fce_A          200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS-------------------------  254 (512)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred             HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence            8878889999999999874    89999999999999999999999988753110                         


Q ss_pred             hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCC----
Q 008787          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----  431 (553)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~----  431 (553)
                                  ...        ..++++|.+++||+++++++.+++.+.+ ++++++.||+||++..++......    
T Consensus       255 ------------~~~--------~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  314 (512)
T 3fce_A          255 ------------FSE--------SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD  314 (512)
T ss_dssp             ------------CST--------TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred             ------------ccc--------hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence                        000        1124899999999999999999999988 889999999999988776544322    


Q ss_pred             ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhcc----CCccccCceEEEccCC
Q 008787          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNG  507 (553)
Q Consensus       432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~----~g~~~TGD~g~~~~dG  507 (553)
                      .....++|+|.++++++++| +++.  ++++|+.|||+|+||+++.||+++|+.+.+.|.    +|||+|||+|++ +||
T Consensus       315 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG  390 (512)
T 3fce_A          315 QYKSLPVGYCKSDCRLLIMK-EDGT--IAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG  390 (512)
T ss_dssp             HCSSCCCEEECTTCEEEEEC-SSSC--BCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred             ccCCCccccccCCcEEEEEC-CCCC--CCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence            12346789999999999999 5554  555679999999999999999999999999983    459999999999 799


Q ss_pred             cEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus       391 ~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~  434 (512)
T 3fce_A          391 LLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKK  434 (512)
T ss_dssp             EEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEE
T ss_pred             EEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEec
Confidence            99999999999997 899999999999999999999999998753

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=4.9e-64  Score=538.84  Aligned_cols=435  Identities=19%  Similarity=0.204  Sum_probs=362.1

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|.++++  ||++|+++.    +     +++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus        26 ~~~l~~~~~~~a~--pd~~Av~~~----~-----~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA   94 (617)
T 3rg2_A           26 DLPLTDILTRHAA--SDSIAVIDG----E-----RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFA   94 (617)
T ss_dssp             CCCTTHHHHTTTT--CCSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             cCCHHHHHHHhhC--CCCeEEecC----C-----ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence            5789999999887  999999864    3     6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhh----hhhccccccccCccEEEEecCCchHHHHHHhhCCce
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (553)
                      |+++|++++|+++..+.+++.++++++++++++++.....    ...............+........            
T Consensus        95 ~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  162 (617)
T 3rg2_A           95 LLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE------------  162 (617)
T ss_dssp             HHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST------------
T ss_pred             HHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc------------
Confidence            9999999999999999999999999999999999876531    111111112234444444443321            


Q ss_pred             eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChH
Q 008787          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (553)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  276 (553)
                       ..+.+...... ......+..++++++++|||||||.||+|+++|+++.+.+......+     ++..++++++.+|++
T Consensus       163 -~~~~~~~~~~~-~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~  235 (617)
T 3rg2_A          163 -HNLQDAINHPA-EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPAA  235 (617)
T ss_dssp             -TBHHHHHHSCC-SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred             -cchhhhhcccc-cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccch
Confidence             13333333321 22233445788999999999999999999999999999988877776     788999999999999


Q ss_pred             HHHHHHH--HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 008787          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (553)
Q Consensus       277 ~~~g~~~--~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (553)
                      |.+++..  .+.++..|+++++.+. ++..++..++++++|++.++|+++..+++........                 
T Consensus       236 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-----------------  298 (617)
T 3rg2_A          236 HNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR-----------------  298 (617)
T ss_dssp             SHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT-----------------
T ss_pred             hhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc-----------------
Confidence            9999874  6678999999999876 8999999999999999999999999987643221100                 


Q ss_pred             HHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCcc
Q 008787          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (553)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~  433 (553)
                                                ...+++|.+++||+++++++.+.+.+.+++++++.||+||++...+........
T Consensus       299 --------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~  352 (617)
T 3rg2_A          299 --------------------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEK  352 (617)
T ss_dssp             --------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHH
T ss_pred             --------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccc
Confidence                                      011489999999999999999999999999999999999987655443333333


Q ss_pred             ccCccCCCC-CCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEE
Q 008787          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (553)
Q Consensus       434 ~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~  511 (553)
                      ...++|.|+ ++.+++|+| +++  .+++.|+.|||+|+|+.++.||+++|+.|++.| .++||+|||+|++++||+|++
T Consensus       353 ~~~~~G~p~~~~~~~~i~d-~~~--~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~  429 (617)
T 3rg2_A          353 IIHTQGYPMCPDDEVWVAD-AEG--NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITV  429 (617)
T ss_dssp             HHHCCCEESCTTCEEEEEC-TTS--CBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred             cccCCCccCCCCceEEEEC-CCC--CCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEE
Confidence            346789887 788999999 555  456677999999999999999999999999999 799999999999999999999


Q ss_pred             EecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       512 ~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++
T Consensus       430 ~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~  469 (617)
T 3rg2_A          430 QGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMED  469 (617)
T ss_dssp             EEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred             EeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccC
Confidence            9999999997 799999999999999999999999998653

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=5.6e-64  Score=528.85  Aligned_cols=421  Identities=17%  Similarity=0.152  Sum_probs=344.3

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      +.++.+.|+++++++|+++|+.+.    +     +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus         3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA   73 (521)
T 3l8c_A            3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA   73 (521)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            578999999999999999999864    3     5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++.++.+++.++++.++++++|++.+....+.        .. .                     ...+
T Consensus        74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~~  123 (521)
T 3l8c_A           74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVSL  123 (521)
T ss_dssp             HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEEH
T ss_pred             HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccch
Confidence            9999999999999999999999999999999999876432211        11 1                     1122


Q ss_pred             HHHHhcc--cccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHH
Q 008787          201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (553)
Q Consensus       201 ~~l~~~~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  278 (553)
                      .++....  ...........++++++|+|||||||.||+|++||+++.+.+.......   ......++++++..|++|.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~  200 (521)
T 3l8c_A          124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD  200 (521)
T ss_dssp             HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred             hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence            2221110  0112223445789999999999999999999999999998776554331   1256788999999999998


Q ss_pred             HHHHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 008787          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (553)
Q Consensus       279 ~g~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (553)
                      .++..++.++..|+++++.+.    ++..+++.+.++++|++.++|+++..+.....                       
T Consensus       201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------------  257 (521)
T 3l8c_A          201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD-----------------------  257 (521)
T ss_dssp             GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----------------------
T ss_pred             HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----------------------
Confidence            888777888999999988764    89999999999999999999999987753100                       


Q ss_pred             HHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCC--
Q 008787          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--  431 (553)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~--  431 (553)
                                    ....        ..+++|.+++||+++++++.+.+.+.+ ++++++.||+||++..++......  
T Consensus       258 --------------~~~~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~  315 (521)
T 3l8c_A          258 --------------FCQA--------KMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM  315 (521)
T ss_dssp             --------------CSTT--------TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred             --------------cccc--------cCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence                          0000        114899999999999999999999888 899999999999988766543221  


Q ss_pred             --ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc----cCCccccCceEEEcc
Q 008787          432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTGDIGQILP  505 (553)
Q Consensus       432 --~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~----~~g~~~TGD~g~~~~  505 (553)
                        .....++|+|+|+++++|+| +++.  +++.|+.|||+|+||+++.||+++|+.+++.|    .+|||+|||+|++|+
T Consensus       316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~  392 (521)
T 3l8c_A          316 VDNYTRLPIGYPKPDSPTYIID-EDGK--ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE  392 (521)
T ss_dssp             HHHCSSCEEEEECTTSCEEEEC-TTSC--BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred             ccCCCccccccccCCCEEEEEC-CCcC--CCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence              12336799999999999999 6554  45667999999999999999999999999988    356999999999999


Q ss_pred             CCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       506 dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ||+|++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus       393 dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~  438 (521)
T 3l8c_A          393 DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYN  438 (521)
T ss_dssp             SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCS
T ss_pred             CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeec
Confidence            9999999999999997 799999999999999999999999998753

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2.4e-64  Score=529.04  Aligned_cols=429  Identities=22%  Similarity=0.232  Sum_probs=344.5

Q ss_pred             cHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 008787           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (553)
Q Consensus        43 ~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~  122 (553)
                      |+.++|.++++++|+++|+++.   +      +++||+||.++++++|++|++.   +||+|+++++|++++++++|||+
T Consensus         2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~   69 (501)
T 3ipl_A            2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW   69 (501)
T ss_dssp             -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence            5678899999999999999864   2      4899999999999999999986   89999999999999999999999


Q ss_pred             hcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCcee-eeHH
Q 008787          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-YSWD  201 (553)
Q Consensus       123 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  201 (553)
                      ++|++++|+++.++.+++.++++.++++++|++............  ..................   ....... ....
T Consensus        70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  144 (501)
T 3ipl_A           70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGLLD---NTMGIQYDTSNE  144 (501)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC------------------------------
T ss_pred             HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeecccccccc---cccccccccchh
Confidence            999999999999999999999999999999999876543322111  011111110000000000   0000000 0011


Q ss_pred             HHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHH
Q 008787          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (553)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~  281 (553)
                      .+...............++++++++|||||||.||+|++||+++.+.+..+...+     ++..++++++.+|++|.+|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~  219 (501)
T 3ipl_A          145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL  219 (501)
T ss_dssp             -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred             hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence            1111111111223345789999999999999999999999999999988877666     78899999999999999999


Q ss_pred             HHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccC
Q 008787          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (553)
Q Consensus       282 ~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (553)
                      ...+.++..|+++++.+. +++.+++.++++++|++.++|+++..|.+....                            
T Consensus       220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------  271 (501)
T 3ipl_A          220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH----------------------------  271 (501)
T ss_dssp             HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------
T ss_pred             HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------
Confidence            888889999999999876 999999999999999999999999988652100                            


Q ss_pred             CcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC-ccccCccC
Q 008787          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAG  439 (553)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-~~~~~~~G  439 (553)
                                          ...++|.+++||+++++++.+.+.+ +++++++.||+||+++.++...... .....++|
T Consensus       272 --------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G  330 (501)
T 3ipl_A          272 --------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG  330 (501)
T ss_dssp             --------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred             --------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence                                0027999999999999999999987 4999999999999987655443322 33457899


Q ss_pred             CCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEecccCce
Q 008787          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI  519 (553)
Q Consensus       440 ~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i  519 (553)
                      +|+++++++++| ++       .++.|||+|+|+.++.||+++++.+.+ |.+|||+|||+|++|+||+|+++||.+|+|
T Consensus       331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~i  401 (501)
T 3ipl_A          331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLI  401 (501)
T ss_dssp             EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCE
T ss_pred             CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceE
Confidence            999999999999 43       346899999999999999999999887 889999999999999999999999999999


Q ss_pred             ecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          520 KISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       520 ~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ++ +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus       402 k~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~  433 (501)
T 3ipl_A          402 IS-GGENIYPYQIETVAKQFPGISDAVCVGHPD  433 (501)
T ss_dssp             EC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred             EE-CCEEECHHHHHHHHHhCCCccEEEEEEEec
Confidence            96 899999999999999999999999999764

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=6.6e-64  Score=524.98  Aligned_cols=417  Identities=26%  Similarity=0.312  Sum_probs=340.3

Q ss_pred             CCcccHHHHHHHHHHcCCC-CCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 008787           39 SDLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (553)
Q Consensus        39 ~~~~~l~~~l~~~a~~~p~-~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~  117 (553)
                      .+|.++.+.|.++++++|+ ++|+++.    +     +++||+||.++++++|..|.     .|++|+++++|+++++++
T Consensus        19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~   84 (505)
T 3nyq_A           19 SHMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA   84 (505)
T ss_dssp             -----CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred             cccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence            4578999999999999887 9999864    3     68999999999999998774     488999999999999999


Q ss_pred             HHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCcee
Q 008787          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (553)
Q Consensus       118 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (553)
                      +|||+++|++++|+++.++.+++.+++++++++++|++.....      ......... +.++..               
T Consensus        85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~-~~~~~~---------------  142 (505)
T 3nyq_A           85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALER-VDVDVR---------------  142 (505)
T ss_dssp             HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEE-EECCTT---------------
T ss_pred             HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhccccc-cccccc---------------
Confidence            9999999999999999999999999999999999999865211      000111111 111110               


Q ss_pred             eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHH
Q 008787          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (553)
Q Consensus       198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  277 (553)
                                .....+.....++++++++|||||||.||+|++||+++.+.+......+     ++..+|++++.+|++|
T Consensus       143 ----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~  207 (505)
T 3nyq_A          143 ----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFH  207 (505)
T ss_dssp             ----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTS
T ss_pred             ----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHH
Confidence                      0111223345778999999999999999999999999999988877776     7889999999999999


Q ss_pred             HHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 008787          278 ILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (553)
Q Consensus       278 ~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (553)
                      ..|+.. .+.++..|+++++.+. ++..+++.+ ++++|+++++|+++..|++.+.....                    
T Consensus       208 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------  266 (505)
T 3nyq_A          208 VHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE--------------------  266 (505)
T ss_dssp             HHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH--------------------
T ss_pred             HHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch--------------------
Confidence            999875 6778999999998876 899999999 88999999999999998764321110                    


Q ss_pred             HhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCcccc
Q 008787          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (553)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~  435 (553)
                                    ....+        +++|.+++||+++++++.+++.+.++.++++.||+||++..++..... ....
T Consensus       267 --------------~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~  323 (505)
T 3nyq_A          267 --------------LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADG-EPRA  323 (505)
T ss_dssp             --------------HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS-CCCT
T ss_pred             --------------hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCC-CCCC
Confidence                          01112        279999999999999999999998999999999999998766654433 3344


Q ss_pred             CccCCCCCCeeEEEeecCCCCCCCC-CCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEEEe
Q 008787          436 GTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIID  513 (553)
Q Consensus       436 ~~~G~~~~~~~v~i~~~~~~~~~~~-~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~G  513 (553)
                      +++|+|+++++++|+| +++...+. +.|+.|||+|+|+.++.||+++|+.+++.| .+|||+|||+|++|+||+|+++|
T Consensus       324 ~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~G  402 (505)
T 3nyq_A          324 GTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVG  402 (505)
T ss_dssp             TCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEE
T ss_pred             CCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeC
Confidence            7899999999999999 66655443 447899999999999999999999999999 69999999999999999999999


Q ss_pred             cc-cCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          514 RK-KNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       514 R~-~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |. +|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus       403 R~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~  441 (505)
T 3nyq_A          403 RKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPD  441 (505)
T ss_dssp             ESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred             CccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeEC
Confidence            98 589997 899999999999999999999999999764

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=2.3e-63  Score=532.51  Aligned_cols=435  Identities=17%  Similarity=0.224  Sum_probs=353.7

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ...++.++|.++++++|+++|+++.   ++  +..+++||+||.++++++|++|+++|+++||+|+++++|++++++++|
T Consensus         9 ~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   83 (590)
T 3kxw_A            9 QCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFL   83 (590)
T ss_dssp             TCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHH
Confidence            4689999999999999999999986   42  233799999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCC---hhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCce
Q 008787          120 ACNALSLICVPLYDTLG---PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~---~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (553)
                      ||+++|++++|+++..+   .+++.++++.+++++++++......+........+....+..                  
T Consensus        84 A~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~------------------  145 (590)
T 3kxw_A           84 GCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPA------------------  145 (590)
T ss_dssp             HHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEE------------------
T ss_pred             HHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccce------------------
Confidence            99999999999999874   578999999999999999988766553322111111111111                  


Q ss_pred             eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChH
Q 008787          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (553)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  276 (553)
                       ...+.+.... ..........++++++|+|||||||.||+|++||+++++.+......+     ++..++++++++|++
T Consensus       146 -~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~  218 (590)
T 3kxw_A          146 -IALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPPH  218 (590)
T ss_dssp             -EEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred             -eechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCCC
Confidence             1111111111 112233456789999999999999999999999999999998877766     788999999999999


Q ss_pred             HHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 008787          277 HILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (553)
Q Consensus       277 ~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (553)
                      |.+|+.. ++.+++.|+++++.+.     ++..+++.|+++++|++.++|.++..+++.+....                
T Consensus       219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------------  282 (590)
T 3kxw_A          219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK----------------  282 (590)
T ss_dssp             SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG----------------
T ss_pred             cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh----------------
Confidence            9999986 7778999999998764     79999999999999999999999988865321110                


Q ss_pred             HHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC------CceEeeeccccCCCce
Q 008787          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGPT  424 (553)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~i~~~YG~tE~g~~~  424 (553)
                                        ....        .++++|.+++||+++++++.+.+.+.++      .++++.||+||++.++
T Consensus       283 ------------------~~~~--------~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~  336 (590)
T 3kxw_A          283 ------------------KEGL--------DLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLV  336 (590)
T ss_dssp             ------------------GTTC--------CCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEE
T ss_pred             ------------------ccCC--------CchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccccccccccee
Confidence                              0111        1248999999999999999999998873      4699999999999877


Q ss_pred             eeccCC--------------------------CccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCcccc
Q 008787          425 TVCFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG  478 (553)
Q Consensus       425 ~~~~~~--------------------------~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~g  478 (553)
                      +.....                          ......++|+|+++  ++|+| +++ ..+++.|+.|||+|+||+++.|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~G  412 (590)
T 3kxw_A          337 TGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDT-LIPCDFDQVGEIWVQSNSVAKG  412 (590)
T ss_dssp             EECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTT-CCBCCTTBCEEEEEESTTSCCC
T ss_pred             ecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCC-CcCCCCCCEEEEEEeCCccccc
Confidence            754321                          12234678999988  78888 443 3566778999999999999999


Q ss_pred             ccCChhhhhhhccC-------C--ccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHH-hcCcCcc--eEE
Q 008787          479 YYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIE--DVS  546 (553)
Q Consensus       479 y~~~~~~~~~~~~~-------g--~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l-~~~p~V~--~~~  546 (553)
                      |+++|+.+++.|.+       |  ||+|||+|++| ||+|+|+||.+|+|++ +|++|+|.|||++| ..||.|.  +|+
T Consensus       413 Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~  490 (590)
T 3kxw_A          413 YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCA  490 (590)
T ss_dssp             BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEE
T ss_pred             ccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEE
Confidence            99999999999843       5  99999999999 9999999999999997 89999999999999 8899999  899


Q ss_pred             EEecCC
Q 008787          547 ISYSSV  552 (553)
Q Consensus       547 V~g~~~  552 (553)
                      |+|.++
T Consensus       491 v~~~~~  496 (590)
T 3kxw_A          491 AFVIQE  496 (590)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            998754

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=5.6e-63  Score=525.87  Aligned_cols=435  Identities=17%  Similarity=0.149  Sum_probs=317.3

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeecccCC----CCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 008787           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG----KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW  114 (553)
Q Consensus        39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~----~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~  114 (553)
                      ....++.++|+++++++|+++|+++.   ++    ..+..+++||+||.++++++|+.|.+.|+ +||+|+++++|++++
T Consensus        17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~   92 (562)
T 3ite_A           17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA   92 (562)
T ss_dssp             -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred             cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence            34688999999999999999999875   32    12234789999999999999999999999 799999999999999


Q ss_pred             HHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCC
Q 008787          115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (553)
Q Consensus       115 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (553)
                      ++++|||+++|++++|+++.++.+++.+++++++++++|++......+.      ......++....             
T Consensus        93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~-------------  153 (562)
T 3ite_A           93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKN-------------  153 (562)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTC-------------
T ss_pred             HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccc-------------
Confidence            9999999999999999999999999999999999999999876543321      111122222111             


Q ss_pred             ceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhc---cccCCCCCCcEEEE
Q 008787          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---QFEDKMTVDDVYLS  271 (553)
Q Consensus       195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~  271 (553)
                         ..+.+...... .........++++++|+|||||||.||+|++||+++.+.+..+...+.   .....+...+++++
T Consensus       154 ---~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (562)
T 3ite_A          154 ---QSFIENLSTQD-TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLC  229 (562)
T ss_dssp             ---HHHHHHHHHSC-CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEEC
T ss_pred             ---hhhhhhccccc-ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEE
Confidence               11222222211 111223446788999999999999999999999999888766544321   11124677899999


Q ss_pred             ecChHHHHHHHHHHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 008787          272 FLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY  349 (553)
Q Consensus       272 ~~p~~~~~g~~~~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (553)
                      ..|+.|..++...+.++..|+++++.+.  .++.+.+.++++++|++.++|+++..+..                     
T Consensus       230 ~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~---------------------  288 (562)
T 3ite_A          230 LASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL---------------------  288 (562)
T ss_dssp             CSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC---------------------
T ss_pred             ecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc---------------------
Confidence            9999998888777788999999888765  46788999999999999999998776421                     


Q ss_pred             HHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccC
Q 008787          350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP  429 (553)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~  429 (553)
                                      .+            ...++||.+++||+++++++.+.+++.+++++++.||+||++..++....
T Consensus       289 ----------------~~------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~  340 (562)
T 3ite_A          289 ----------------VP------------EDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRI  340 (562)
T ss_dssp             ----------------CG------------GGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEEC
T ss_pred             ----------------Cc------------cccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeee
Confidence                            00            01148999999999999999999999889999999999999887776554


Q ss_pred             CCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCC--ccccCceEEEccCC
Q 008787          430 DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQILPNG  507 (553)
Q Consensus       430 ~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g--~~~TGD~g~~~~dG  507 (553)
                      .......++|+|++++++++++ ++++ .+++.|+.|||+|+|+.++.||+++|+.+...+.+|  ||+|||+|++|+||
T Consensus       341 ~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG  418 (562)
T 3ite_A          341 LPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADS  418 (562)
T ss_dssp             CTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTS
T ss_pred             cCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCC
Confidence            4444457899999999999999 4433 456678999999999999999999999988777777  99999999999999


Q ss_pred             cEEEEecccCceecCCceeecchhHHHHHhcC-cCcceEEEEecCC
Q 008787          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVA-PIIEDVSISYSSV  552 (553)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~-p~V~~~~V~g~~~  552 (553)
                      +|+++||.+|+|++ +|++|+|.|||++|.+| |.|.+++|++.++
T Consensus       419 ~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~  463 (562)
T 3ite_A          419 SILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNH  463 (562)
T ss_dssp             CEEEEEEC--------------------------------------
T ss_pred             eEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecC
Confidence            99999999999997 89999999999999998 8899999887654

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=3.8e-59  Score=539.10  Aligned_cols=419  Identities=20%  Similarity=0.242  Sum_probs=350.4

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      ..++.++|.++++++|+++|+++.   +      +++||+||.++++++|+.|++.|+++|++|+|+++|++++++++||
T Consensus       463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la  533 (1304)
T 2vsq_A          463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG  533 (1304)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence            378999999999999999999864   3      4899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|++|.++.+++.++++++++++++++......+..     .+.....+.+++..               .+
T Consensus       534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~---------------~~  593 (1304)
T 2vsq_A          534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQT---------------RF  593 (1304)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGG---------------GG
T ss_pred             HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEecccc---------------cc
Confidence            99999999999999999999999999999999998875443211     11122333333210               00


Q ss_pred             HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (553)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  280 (553)
                          ..  ....+.....++++++++|||||||.||||+++|+++.+... ....+     ++..+++++...|+.+..+
T Consensus       594 ----~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~~-~~~~~-----~~~~~d~~l~~~~~~fd~~  661 (1304)
T 2vsq_A          594 ----EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVK-HVDYM-----AFSDQDTFLSVSNYAFDAF  661 (1304)
T ss_dssp             ----GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHS-SCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred             ----cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHHH-HHHhc-----CCCCCCEEEEECCccHHHH
Confidence                00  111222345788999999999999999999999999987633 33333     6788999999999998888


Q ss_pred             HHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (553)
Q Consensus       281 ~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (553)
                      ...++.++..|+++++.+.    ++..+.+.|+++++|+++++|+++..|.+....                        
T Consensus       662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------  717 (1304)
T 2vsq_A          662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------  717 (1304)
T ss_dssp             HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------
T ss_pred             HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------
Confidence            7778889999999999874    899999999999999999999999988642100                        


Q ss_pred             hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCC---c
Q 008787          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M  432 (553)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~---~  432 (553)
                                      .+        +++|.+++||+++++++.+.+.+.+ +.++++.||+||++..++......   .
T Consensus       718 ----------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~  773 (1304)
T 2vsq_A          718 ----------------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS  773 (1304)
T ss_dssp             ----------------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred             ----------------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence                            01        2799999999999999999888877 468999999999998766543221   2


Q ss_pred             cccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-c------CCccccCceEEEcc
Q 008787          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I------DGWFHTGDIGQILP  505 (553)
Q Consensus       433 ~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~------~g~~~TGD~g~~~~  505 (553)
                      ....++|+|+++++++|+| +++  .+++.|+.|||+|+|+.+++||+++|+.|++.| .      ++||+|||+|++++
T Consensus       774 ~~~~~iG~p~~~~~~~i~d-~~~--~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~  850 (1304)
T 2vsq_A          774 ISSLPIGKPISNASVYILN-EQS--QLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP  850 (1304)
T ss_dssp             CSSCCCBEECTTEEEEEEC-TTS--CBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT
T ss_pred             CCCCCCceeeCCCEEEEEC-CCc--CCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC
Confidence            2336799999999999999 554  455677999999999999999999999999998 2      34999999999999


Q ss_pred             CCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       506 dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      ||.|+|+||.||+||+ +|++|.|.|||++|.+||+|.+|+|++.++
T Consensus       851 dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~  896 (1304)
T 2vsq_A          851 DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRH  896 (1304)
T ss_dssp             TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred             CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEec
Confidence            9999999999999998 799999999999999999999999998754

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=3e-58  Score=480.66  Aligned_cols=401  Identities=16%  Similarity=0.189  Sum_probs=312.0

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      +..++.++|.++++++|+++|+++....++.++..+++||+||.++++++|++|+++|+ +||+|+++++|++++++++|
T Consensus        22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l  100 (480)
T 3t5a_A           22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL  100 (480)
T ss_dssp             --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence            46899999999999999999999871111334555799999999999999999999996 99999999999999999999


Q ss_pred             HHHhcCCEEeeCCC---CCChhHHHHHHhhcCceEEEEcchhhhhhhcccccccc-CccEEEEecCCchHHHHHHhhCCc
Q 008787          120 ACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGI  195 (553)
Q Consensus       120 A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  195 (553)
                      ||+++|++++|+++   .++.+++.++++.++++++|++......+......... ....++.++...            
T Consensus       101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  168 (480)
T 3t5a_A          101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------  168 (480)
T ss_dssp             HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred             HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence            99999999999999   77889999999999999999998877665443321110 111222222110            


Q ss_pred             eeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCC------CcEE
Q 008787          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------DDVY  269 (553)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~------~~~~  269 (553)
                               . ............++++++|+|||||||.||+|++||+++.+.+......+     .+..      ++++
T Consensus       169 ---------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~  233 (480)
T 3t5a_A          169 ---------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSAL  233 (480)
T ss_dssp             ---------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEE
T ss_pred             ---------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeE
Confidence                     0 00111233445778999999999999999999999999998888776665     4444      8999


Q ss_pred             EEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHH
Q 008787          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (553)
Q Consensus       270 ~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~  343 (553)
                      ++.+|++|.+|+.. ++.+++.|+++++.+.     ++..+++.++++++| +..+|+++..++......          
T Consensus       234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~----------  302 (480)
T 3t5a_A          234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD----------  302 (480)
T ss_dssp             EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT----------
T ss_pred             EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc----------
Confidence            99999999999875 6778999999999862     899999999999999 889999988876421100          


Q ss_pred             HHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC------CceEeeecc
Q 008787          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGL  417 (553)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~i~~~YG~  417 (553)
                                             ......        .+++||.+++||+++++++.+++.+.++      ..+++.||+
T Consensus       303 -----------------------~~~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~  351 (480)
T 3t5a_A          303 -----------------------DDMAGR--------DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL  351 (480)
T ss_dssp             -----------------------GGGTTC--------CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred             -----------------------cccccc--------chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence                                   001111        1248999999999999999999999874      369999999


Q ss_pred             ccCCCceeeccCCC------------------------ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecC
Q 008787          418 TETCGPTTVCFPDE------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK  473 (553)
Q Consensus       418 tE~g~~~~~~~~~~------------------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~  473 (553)
                      ||++..++......                        .....++|+|++ ++++|+| ++++ .+++.|+.|||+|+||
T Consensus       352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g-~~~~~g~~GEl~v~g~  428 (480)
T 3t5a_A          352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTC-IECPDGTVGEIWVHGD  428 (480)
T ss_dssp             TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTT-EECCTTBCEEEEEEST
T ss_pred             cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCC-cCCCCCCEEEEEEeCC
Confidence            99998777654332                        123468999999 9999999 5433 4566789999999999


Q ss_pred             CccccccCChhhhhhhc------------cCCccccCceEEEccCCcEEEEec
Q 008787          474 TLFSGYYKNPDLTRESI------------IDGWFHTGDIGQILPNGVVKIIDR  514 (553)
Q Consensus       474 ~~~~gy~~~~~~~~~~~------------~~g~~~TGD~g~~~~dG~l~~~GR  514 (553)
                      +++.||+++|+.|++.|            .+|||+|||+|++| ||+|+|+||
T Consensus       429 ~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          429 NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             ccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            99999999999999998            35699999999997 999999998

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=6.6e-41  Score=334.10  Aligned_cols=247  Identities=18%  Similarity=0.138  Sum_probs=208.2

Q ss_pred             CCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEec
Q 008787          219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH  298 (553)
Q Consensus       219 ~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~  298 (553)
                      .+++++|+|||||||.||+|++||+++.+.+......+     ++.++|++++++|++|.+|+...+.++..|+++++.+
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~  110 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE  110 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence            36889999999999999999999999999988877776     7889999999999999999988888899999988876


Q ss_pred             CChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHH
Q 008787          299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK  378 (553)
Q Consensus       299 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (553)
                      .. ...++.++++++|++.++|+++..|++...                                      ...++    
T Consensus       111 ~~-~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~--------------------------------------~~~~l----  147 (358)
T 4gs5_A          111 PT-ANPLAGLDHADFDFVAMVPMQLQSILENSA--------------------------------------TSGQV----  147 (358)
T ss_dssp             CC-SCTTTTCSSCCCSEEEECHHHHHHHHHCTT--------------------------------------TGGGG----
T ss_pred             cc-ccHHHHHHHhCCeEEEcChHHHHHhhcccc--------------------------------------ccccC----
Confidence            42 234678899999999999999998865211                                      00111    


Q ss_pred             HHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCC
Q 008787          379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS  458 (553)
Q Consensus       379 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~  458 (553)
                          ++||.+++||+++++++.+++++. ++++++.||+||++..++......... +++|.+.||+++.+.+       
T Consensus       148 ----~~lr~v~~gG~~l~~~~~~~~~~~-~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~-------  214 (358)
T 4gs5_A          148 ----DRLGKVLLGGAPVNHALAMQISDL-AMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE-------  214 (358)
T ss_dssp             ----GGGCSEEECSSCCCHHHHHHHHTC-SSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred             ----CcceEEEEcccCCCchheeccccc-CceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence                389999999999999999999874 999999999999998777665544333 7888999999887644       


Q ss_pred             CCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHH--
Q 008787          459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY--  536 (553)
Q Consensus       459 ~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l--  536 (553)
                            .|||+++|+..               .+|||+|||+|++|+|| ++++||.||+|++ +|++|+|.|||++|  
T Consensus       215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~  271 (358)
T 4gs5_A          215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA  271 (358)
T ss_dssp             ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred             ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence                  59999998632               37899999999999888 6677999999997 89999999999887  


Q ss_pred             -hcCcCcceEEEEe
Q 008787          537 -CVAPIIEDVSISY  549 (553)
Q Consensus       537 -~~~p~V~~~~V~g  549 (553)
                       ..||.|.+|+|++
T Consensus       272 ~~~~p~V~~a~vv~  285 (358)
T 4gs5_A          272 VFHHLNIGNAFFCW  285 (358)
T ss_dssp             HHHHHTCCCCEEEE
T ss_pred             hccCCCccEEEEEE
Confidence             4689999998873

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=3.6e-40  Score=339.20  Aligned_cols=273  Identities=17%  Similarity=0.185  Sum_probs=220.6

Q ss_pred             CCCC-CCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHH-HHHHHHHcCcE
Q 008787          216 PPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGAS  293 (553)
Q Consensus       216 ~~~~-~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~l~~g~~  293 (553)
                      ...+ +++++++|||||||.||+|++||+++.+.+..+...+..  .++..+|++++..|+.|..+.. ..+.++..|++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~  158 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL  158 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence            3455 889999999999999999999999998776655333221  2678899999999987655554 46667899999


Q ss_pred             EEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHH
Q 008787          294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL  372 (553)
Q Consensus       294 ~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (553)
                      +++.+. +++.+++.|+++++|+++++|+++..|++.+.......                                   
T Consensus       159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~-----------------------------------  203 (436)
T 3qov_A          159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP-----------------------------------  203 (436)
T ss_dssp             EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred             EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence            988765 99999999999999999999999999876543221000                                   


Q ss_pred             HHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCc-eeeccCCCccccCccCCCCCCeeEEEee
Q 008787          373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEE  451 (553)
Q Consensus       373 ~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~  451 (553)
                              ..+++|.+++||+++++++.+++++.||+++++.||+||+++. ........    ...|.+.+++.++|+|
T Consensus       204 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~----~g~~~~~~~~~v~i~d  271 (436)
T 3qov_A          204 --------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQEQ----NGMHFWEDCYLVEIID  271 (436)
T ss_dssp             --------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTTC----SSEEECTTTEEEEEEC
T ss_pred             --------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCCC----CeeEEccCceEEEEEE
Confidence                    0148999999999999999999999999999999999999654 33332211    2356777899999999


Q ss_pred             cCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCC------c---EEEEecccCceecC
Q 008787          452 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG------V---VKIIDRKKNLIKIS  522 (553)
Q Consensus       452 ~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG------~---l~~~GR~~d~i~~~  522 (553)
                       ++++ .++++|+.|||+|+|..            .+.+.++||+|||+|+++++|      +   +++.||.+|+|++ 
T Consensus       272 -~~~g-~~~~~g~~Gel~v~~~~------------~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-  336 (436)
T 3qov_A          272 -PETG-EPVPEGEIGELVLTTLD------------REMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-  336 (436)
T ss_dssp             -TTTC-SBCSTTCCEEEEEEESS------------CCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-
T ss_pred             -CCCC-CCCCCCCceEEEEeccC------------cCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-
Confidence             4333 55667899999999842            233568999999999999998      5   6999999999998 


Q ss_pred             CceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          523 QGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       523 ~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|++|+|.+||++|.+||+|.+++|++.++
T Consensus       337 ~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~  366 (436)
T 3qov_A          337 KGVNIFPMQVEKILVQFPELGSNYLITLET  366 (436)
T ss_dssp             TTEEECHHHHHHHHTTCTTEEEEEEEEEEE
T ss_pred             CCEEECHHHHHHHHHhCcCcCCcEEEEEEc
Confidence            899999999999999999999999998753

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=1.6e-39  Score=334.47  Aligned_cols=274  Identities=19%  Similarity=0.183  Sum_probs=220.0

Q ss_pred             CCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcE
Q 008787          215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGAS  293 (553)
Q Consensus       215 ~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~g~~  293 (553)
                      ....++++++++|||||||.||+|++||+++...+..+...+..  .++..+|++++.+|+ +|..++...+.++..|++
T Consensus        85 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~  162 (437)
T 2y27_A           85 FAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLT  162 (437)
T ss_dssp             CSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCE
T ss_pred             ccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCE
Confidence            34567889999999999999999999999988766544332211  267889999999998 677777777778999999


Q ss_pred             EEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHH
Q 008787          294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL  372 (553)
Q Consensus       294 ~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (553)
                      +++.+. +++.+++.|+++++|+++++|+++..|++.........                                   
T Consensus       163 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~-----------------------------------  207 (437)
T 2y27_A          163 VIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP-----------------------------------  207 (437)
T ss_dssp             EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------------------------
T ss_pred             EEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence            887766 99999999999999999999999999876433211000                                   


Q ss_pred             HHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCc-eeeccCCCccccCccCCCCCCeeEEEee
Q 008787          373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEE  451 (553)
Q Consensus       373 ~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~  451 (553)
                              ..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. .+.......   ...+.+.+++.++|+|
T Consensus       208 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d  276 (437)
T 2y27_A          208 --------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID  276 (437)
T ss_dssp             --------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC
T ss_pred             --------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc
Confidence                    0138999999999999999999998889999999999998443 333322111   1245677899999999


Q ss_pred             cCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEcc-CCcE-----EEEecccCceecCCce
Q 008787          452 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-NGVV-----KIIDRKKNLIKISQGE  525 (553)
Q Consensus       452 ~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~-dG~l-----~~~GR~~d~i~~~~G~  525 (553)
                       ++++ .++++|+.|||+|+|.            +.+.|.++||+|||+|++++ ||++     ++.||.+|+|++ +|+
T Consensus       277 -~~~g-~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~  341 (437)
T 2y27_A          277 -PETG-EVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGV  341 (437)
T ss_dssp             -TTTC-CBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTE
T ss_pred             -CCCC-CCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCe
Confidence             4432 5566789999999983            23345689999999999998 6985     899999999997 899


Q ss_pred             eecchhHHHHHhcCcCcceEEEEecC
Q 008787          526 YVALEYLENVYCVAPIIEDVSISYSS  551 (553)
Q Consensus       526 ~~~~~~iE~~l~~~p~V~~~~V~g~~  551 (553)
                      +|+|.+||++|.+||+|.+++|++.+
T Consensus       342 ~v~p~eiE~~l~~~p~V~~~~vv~~~  367 (437)
T 2y27_A          342 NVFPTQIEEQLLKQRALAPHYQIVLT  367 (437)
T ss_dssp             EECHHHHHHHHTTCTTBCSCCEEEEE
T ss_pred             EECHHHHHHHHHhCcCcCccEEEEEe
Confidence            99999999999999999999988854

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=3.2e-39  Score=332.78  Aligned_cols=273  Identities=17%  Similarity=0.176  Sum_probs=218.9

Q ss_pred             CCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcEE
Q 008787          216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV  294 (553)
Q Consensus       216 ~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~g~~~  294 (553)
                      ...++++++++|||||||.||+|++||+++......+...+..  .++..+|++++..|+ +|..++...+.++..|+++
T Consensus        88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~  165 (443)
T 2y4o_A           88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV  165 (443)
T ss_dssp             SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred             CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence            4567889999999999999999999999988766544332211  267889999999998 5677776677788899998


Q ss_pred             EEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHH
Q 008787          295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA  373 (553)
Q Consensus       295 ~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (553)
                      ++.+. +++.+++.|+++++|+++++|+++..|++.........                                    
T Consensus       166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------  209 (443)
T 2y4o_A          166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP------------------------------------  209 (443)
T ss_dssp             ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred             EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence            88766 99999999999999999999999999876433211000                                    


Q ss_pred             HHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCc-eeeccCCCccccCccCCCCCCeeEEEeec
Q 008787          374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV  452 (553)
Q Consensus       374 ~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~~  452 (553)
                             ..+++|.+++||+++++++.+++++.+|+++++.||+||+++. .........   ...+.+.+++.++|+| 
T Consensus       210 -------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d-  278 (443)
T 2y4o_A          210 -------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---DGPVIWEDHFYPEIID-  278 (443)
T ss_dssp             -------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---CSEEECTTTEEEEEEC-
T ss_pred             -------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---CceEEccCCeEEEEEc-
Confidence                   0138999999999999999999999889999999999997443 333222111   1244567899999999 


Q ss_pred             CCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccC-CcE-----EEEecccCceecCCcee
Q 008787          453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-GVV-----KIIDRKKNLIKISQGEY  526 (553)
Q Consensus       453 ~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~d-G~l-----~~~GR~~d~i~~~~G~~  526 (553)
                      ++++ .++++|+.|||+|+|.            +.+.|.++||+|||+|+++++ |++     ++.||.+|+|++ +|++
T Consensus       279 ~~~g-~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~  344 (443)
T 2y4o_A          279 PVTG-EVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGVN  344 (443)
T ss_dssp             TTTC-CBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEE-TTEE
T ss_pred             CCCC-CCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEE-CCEE
Confidence            4432 4566789999999983            223356899999999999999 987     899999999997 7999


Q ss_pred             ecchhHHHHHhcCcCcceEEEEecC
Q 008787          527 VALEYLENVYCVAPIIEDVSISYSS  551 (553)
Q Consensus       527 ~~~~~iE~~l~~~p~V~~~~V~g~~  551 (553)
                      |+|.+||++|.+||+|.+++|++.+
T Consensus       345 v~p~eiE~~l~~~p~V~~~~vv~~~  369 (443)
T 2y4o_A          345 VFPSQIEEIVVALPLLSGQFQITLS  369 (443)
T ss_dssp             ECHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred             ECHHHHHHHHHhCcCcCccEEEEEe
Confidence            9999999999999999999998864

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.96  E-value=3.3e-28  Score=244.30  Aligned_cols=237  Identities=17%  Similarity=0.158  Sum_probs=171.8

Q ss_pred             CCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcEEE
Q 008787          217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG  295 (553)
Q Consensus       217 ~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~g~~~~  295 (553)
                      ..++++++++|||||||.||+|.++|+++......+...+..  .++..+|++++.+|+ +|..|+...+.++..|+.++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~  165 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH--RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF  165 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT--STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh--hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence            467889999999999999999999999999888754333221  257789999999999 99999888777788899433


Q ss_pred             EecCChH-----------------------HHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 008787          296 YYHGDLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (553)
Q Consensus       296 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (553)
                      ..+.++.                       .+++.++++++|+++++|+++..|++....                    
T Consensus       166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~--------------------  225 (369)
T 3hgu_A          166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEV--------------------  225 (369)
T ss_dssp             CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHH--------------------
T ss_pred             CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhh--------------------
Confidence            3333666                       778899999999999999999998753211                    


Q ss_pred             HHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHH-Hhc-CCceEeeeccccCCCceeeccCC
Q 008787          353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFPD  430 (553)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~-~~~-~~~i~~~YG~tE~g~~~~~~~~~  430 (553)
                                       ...++        +++|.+++||+++++++.+.++ +.| ++++++.||+||+++++..+.. 
T Consensus       226 -----------------~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-  279 (369)
T 3hgu_A          226 -----------------VLQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-  279 (369)
T ss_dssp             -----------------HHHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred             -----------------hcccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence                             11112        2899999999999999999999 899 8999999999999876644321 


Q ss_pred             CccccCccCCC------CCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEc
Q 008787          431 EMCMVGTAGPV------SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL  504 (553)
Q Consensus       431 ~~~~~~~~G~~------~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~  504 (553)
                           .++|++      .|+++++|+| ++++ .++++|+.|||+|++.....            + --+|+|||++...
T Consensus       280 -----~~~G~~~~~~~~~~~~~v~ivD-~~~g-~~vp~G~~GEl~vt~l~~~~------------~-l~ry~tgD~~~~~  339 (369)
T 3hgu_A          280 -----TSESQQVIYDSFSPFITYDVVD-SITA-QTVEYGERGNVIVTHLSPWA------------F-YPRVAERDTAIRL  339 (369)
T ss_dssp             -----CTTCSSCEEECCTTTEEEEEEC-TTTC-SBCCTTCEEEEEEEEEETTE------------E-EEEEEEEEEEEEE
T ss_pred             -----ccCCCcccccCCCCCeEEEEEC-CCCC-cCCCCCCceEEEEEEcCccc------------c-cccccCCceEEEe
Confidence                 247888      9999999999 5232 46667899999999842211            1 1137899998875


Q ss_pred             cC--C-------cEEEEecccCceec
Q 008787          505 PN--G-------VVKIIDRKKNLIKI  521 (553)
Q Consensus       505 ~d--G-------~l~~~GR~~d~i~~  521 (553)
                      +.  |       .+..++|.++..++
T Consensus       340 ~~~~g~~~d~~~~v~~~~~~~~~~~i  365 (369)
T 3hgu_A          340 PGVSGFAGDRLADIEPLKISEGRKVI  365 (369)
T ss_dssp             CCSTTCSSCEEEEEEECC--------
T ss_pred             cCCCCCcCcccccceeccccCCCcee
Confidence            43  2       23445666666655

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.80  E-value=2.3e-08  Score=103.02  Aligned_cols=134  Identities=18%  Similarity=0.132  Sum_probs=82.3

Q ss_pred             Cc---eeEEEEcCCCCCHHHHHHHHHhc-CCceE-eeeccccCCCceeeccCCCccccCccC-CCCCCe-eEEEeecCCC
Q 008787          383 GR---LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYS-ELRLEEVPEM  455 (553)
Q Consensus       383 ~~---lr~i~~gG~~l~~~~~~~~~~~~-~~~i~-~~YG~tE~g~~~~~~~~~~~~~~~~~G-~~~~~~-~v~i~~~~~~  455 (553)
                      ++   +..+++||.   ..-...++..+ +.+++ ..|++||+ .++....+..  .+...+ ..+|+. -...++.++.
T Consensus       297 Pnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~--~~~~~~~~L~~~~~ffEFip~~~~  370 (581)
T 4eql_A          297 PNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGINLDPLC--KPEDVSYTFMPNMSYFEFIPMDGG  370 (581)
T ss_dssp             TTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEECSCTTS--CGGGCCEEECTTSSEEEEEECSTT
T ss_pred             CCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeeccCCCC--CcccCceeecCCcEEEEEEecccc
Confidence            57   445555663   33334455544 67777 89999994 3333222211  111222 223333 1223331211


Q ss_pred             -CC-----CCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEcc----CCcEEEEecccCceecCCce
Q 008787          456 -GY-----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQGE  525 (553)
Q Consensus       456 -~~-----~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~----dG~l~~~GR~~d~i~~~~G~  525 (553)
                       ..     ..+..|+.+||+++..+   |.|+             |++||+.++..    ..++.|+||.+++|++ .|+
T Consensus       371 ~~~~~v~l~eVe~G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Ge  433 (581)
T 4eql_A          371 DKNDVVDLEDVKLGCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSD  433 (581)
T ss_dssp             CCSSCEEGGGCCTTCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSC
T ss_pred             CCCcEeCHHHcCCCceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eee
Confidence             11     12235688999998753   4333             89999999875    3589999999999997 799


Q ss_pred             eecchhHHHHHhcC
Q 008787          526 YVALEYLENVYCVA  539 (553)
Q Consensus       526 ~~~~~~iE~~l~~~  539 (553)
                      ++++.+||++|.+.
T Consensus       434 kl~~~~v~~al~~a  447 (581)
T 4eql_A          434 KTNEEDLFKAVSQA  447 (581)
T ss_dssp             CEEHHHHHHHHHHC
T ss_pred             ECCHHHHHHHHHHH
Confidence            99999999999743

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.69  E-value=2.8e-07  Score=95.09  Aligned_cols=132  Identities=13%  Similarity=0.124  Sum_probs=81.2

Q ss_pred             Ccee---EEEEcCCCCCHHHHHHHHHhc-CCceE-eeeccccCCCceeeccCCCccccCccC-CCCCCee-EEEeecCCC
Q 008787          383 GRLR---LVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSE-LRLEEVPEM  455 (553)
Q Consensus       383 ~~lr---~i~~gG~~l~~~~~~~~~~~~-~~~i~-~~YG~tE~g~~~~~~~~~~~~~~~~~G-~~~~~~~-v~i~~~~~~  455 (553)
                      +++|   .+++||.   ..-...++..+ +.+++ ..|++||+ .++....+..  .+...+ ..+|+.- ...++.++.
T Consensus       302 Pnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~--~p~~~~~~L~p~~~ffEFIP~~~~  375 (609)
T 4b2g_A          302 PNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSEC-YFGLNLNPMS--KPSEVSYTIMPNMAYFEFLPHEHS  375 (609)
T ss_dssp             TTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSC-EEEECSCTTS--CGGGCCEEECTTSCEEEEEEGGGT
T ss_pred             CCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCcccccce-eeeeecCCCC--CcccCceeecCCcEEEEEEecccc
Confidence            6754   4455663   23334455544 66766 89999995 3333222211  111222 2333331 223332211


Q ss_pred             ------C-------CCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEcc----CCcEEEEecccCc
Q 008787          456 ------G-------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNL  518 (553)
Q Consensus       456 ------~-------~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~----dG~l~~~GR~~d~  518 (553)
                            .       ...+..|+.+||+|+..   .|.|+             |++||+.+++.    ...+.|+||.+++
T Consensus       376 ~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~  439 (609)
T 4b2g_A          376 SIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVL  439 (609)
T ss_dssp             TSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCC
T ss_pred             ccccccCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCe
Confidence                  0       01234568899999764   35554             89999999873    4689999999999


Q ss_pred             eecCCceeecchhHHHHHh
Q 008787          519 IKISQGEYVALEYLENVYC  537 (553)
Q Consensus       519 i~~~~G~~~~~~~iE~~l~  537 (553)
                      |++ .|+++++.+||++|.
T Consensus       440 l~~-~Geki~~~~v~~av~  457 (609)
T 4b2g_A          440 LSI-DSDKTDEAELQKAVD  457 (609)
T ss_dssp             BCS-SSCCBCHHHHHHHHH
T ss_pred             EEc-cccCCCHHHHHHHHH
Confidence            997 799999999999996

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.52  E-value=9.1e-07  Score=90.96  Aligned_cols=137  Identities=20%  Similarity=0.144  Sum_probs=81.5

Q ss_pred             HhCCceeEE--EEcCCCCCHHHHHHHHHhc-CCceE-eeeccccCCCceeeccCCCccccCccC-CCCCCeeE-EEeecC
Q 008787          380 RLGGRLRLV--ISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSEL-RLEEVP  453 (553)
Q Consensus       380 ~~~~~lr~i--~~gG~~l~~~~~~~~~~~~-~~~i~-~~YG~tE~g~~~~~~~~~~~~~~~~~G-~~~~~~~v-~i~~~~  453 (553)
                      ++=+++++|  +.+|. + ..-...++..+ +.+++ ..|++||+ .++....+..  .++..+ ..+|+... ..++.+
T Consensus       299 ~lWPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~--~~~~~~~~L~p~~~ffEFiP~~  373 (581)
T 4epl_A          299 ALFPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANVTPRL--SPEEATFAVIPNLGYFEFLPVS  373 (581)
T ss_dssp             HHCTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTE-EEEECCCTTS--CTTTCCEEECTTSCEEEEEEC-
T ss_pred             HhCCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccce-eeeeecCCCC--CccccceeecCCcEEEEEEecc
Confidence            344788643  23342 2 22334555555 66776 99999994 3333222211  111122 23333311 222211


Q ss_pred             CC-C----C---CCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccC----CcEEEEecccCceec
Q 008787          454 EM-G----Y---SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GVVKIIDRKKNLIKI  521 (553)
Q Consensus       454 ~~-~----~---~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~d----G~l~~~GR~~d~i~~  521 (553)
                      +. .    .   ..+..|+.+||+++...   |.|+             |++||+.++..-    ..+.|+||.+++|++
T Consensus       374 ~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~  437 (581)
T 4epl_A          374 ETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI  437 (581)
T ss_dssp             ------CCCEEGGGCCTTCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS
T ss_pred             cccCCCCceeeHHHcCCCCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe
Confidence            11 1    0   12345688999998753   4333             899999998642    579999999999998


Q ss_pred             CCceeecchhHHHHHhc
Q 008787          522 SQGEYVALEYLENVYCV  538 (553)
Q Consensus       522 ~~G~~~~~~~iE~~l~~  538 (553)
                       .|+++++.+||++|.+
T Consensus       438 -~Ge~~~~~~v~~al~~  453 (581)
T 4epl_A          438 -NIDKNTERDLQLSVES  453 (581)
T ss_dssp             -SSCCBCHHHHHHHHHH
T ss_pred             -eeeECCHHHHHHHHHH
Confidence             7999999999999964

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=98.24  E-value=5.3e-07  Score=72.20  Aligned_cols=39  Identities=8%  Similarity=0.052  Sum_probs=36.1

Q ss_pred             ecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       513 GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      .|.||||++ +|.+++|.+||++|.+||+|.+++|+|.++
T Consensus         1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~   39 (109)
T 3lax_A            1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLET   39 (109)
T ss_dssp             CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEE
T ss_pred             CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEec
Confidence            389999998 799999999999999999999999998763

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=93.14  E-value=0.93  Score=45.27  Aligned_cols=114  Identities=9%  Similarity=-0.053  Sum_probs=86.0

Q ss_pred             CCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEeeCCCCCChhHHHHH
Q 008787           68 DGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLYDTLGPGAVNFI  143 (553)
Q Consensus        68 d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~  143 (553)
                      .|.+|..+  .+|...+...+..++..+...|+.++|++....+-+  ...+..+++++..|+.+++.+. ..++.+...
T Consensus        95 SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~  173 (436)
T 3qov_A           95 SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKF  173 (436)
T ss_dssp             SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHH
T ss_pred             CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHH
Confidence            56666654  679999998888888888888999999999988743  3445567888999999887754 467889999


Q ss_pred             HhhcCceEEEEcchhhhhhhccccc-----cccCccEEEEecCC
Q 008787          144 LDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL  182 (553)
Q Consensus       144 l~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  182 (553)
                      +++.++.+++..+.....+.+....     ....++.++.-++.
T Consensus       174 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~  217 (436)
T 3qov_A          174 ISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP  217 (436)
T ss_dssp             HHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred             HHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence            9999999999988877666543211     13456676666654

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=93.00  E-value=1.2  Score=44.49  Aligned_cols=124  Identities=14%  Similarity=0.053  Sum_probs=89.0

Q ss_pred             CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEeeC
Q 008787           56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPL  131 (553)
Q Consensus        56 p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~l  131 (553)
                      ++.++.+..  ..|.+|..+  .+|...+...+..++..+...|+.++|++....+-.  ...+...++++..|+.++++
T Consensus        89 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  166 (437)
T 2y27_A           89 QDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF  166 (437)
T ss_dssp             GGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred             hhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence            455554432  155666554  678999988888888888788999999999988853  34455678889999998877


Q ss_pred             CCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccc-----cccCccEEEEecCC
Q 008787          132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL  182 (553)
Q Consensus       132 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  182 (553)
                      +. .+++.+...+++.++.+++..+.....+.+....     ....++.++.-++.
T Consensus       167 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~  221 (437)
T 2y27_A          167 GG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP  221 (437)
T ss_dssp             CS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred             CC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence            65 4788899999999999999988877666543211     12456666666554

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=92.97  E-value=1.2  Score=44.62  Aligned_cols=123  Identities=13%  Similarity=0.082  Sum_probs=89.0

Q ss_pred             CCCCcee-eecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEee
Q 008787           56 PGNRMLG-WRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP  130 (553)
Q Consensus        56 p~~~al~-~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~  130 (553)
                      ++.++.+ +-   .|.+|..+  .+|...+...+..++..+...|+.++|++...++-+  ...+...++++..|+.+++
T Consensus        91 ~~~~~~i~~T---SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~  167 (443)
T 2y4o_A           91 REQVVRVHAS---SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP  167 (443)
T ss_dssp             GGGCCEEEEE---CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred             hhheEEEEEC---CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence            3445533 33   56677665  568899888888888878788999999999988853  3345567888899999887


Q ss_pred             CCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccc-----cccCccEEEEecCC
Q 008787          131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL  182 (553)
Q Consensus       131 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  182 (553)
                      ++.. +.+.+...+++.++.+++..+.....+.+....     ....++.++.-++.
T Consensus       168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~  223 (443)
T 2y4o_A          168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEP  223 (443)
T ss_dssp             CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred             CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence            7654 788899999999999999888876665443211     12456666666554

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=87.99  E-value=7  Score=39.58  Aligned_cols=122  Identities=7%  Similarity=0.009  Sum_probs=85.3

Q ss_pred             CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEeeC
Q 008787           55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL  131 (553)
Q Consensus        55 ~p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l  131 (553)
                      .|+.+|++..  -.|.+|..|  .+|...+...+..+..   ..++.++|++...+|-.-.+ +..+++++..|+..+..
T Consensus       161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~  235 (501)
T 3ipl_A          161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV  235 (501)
T ss_dssp             CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred             CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence            4566665543  145666554  6788888776655543   34889999998888765332 33467888899998877


Q ss_pred             CCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCC
Q 008787          132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL  182 (553)
Q Consensus       132 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (553)
                      + ..+++.+...+++.++.+++..+.....+.+........++.++.-++.
T Consensus       236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~  285 (501)
T 3ipl_A          236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAK  285 (501)
T ss_dssp             S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred             C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence            5 4688999999999999999999888777655443333356666665544

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=87.25  E-value=3.1  Score=40.27  Aligned_cols=123  Identities=13%  Similarity=0.026  Sum_probs=78.7

Q ss_pred             CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEeeC
Q 008787           56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPL  131 (553)
Q Consensus        56 p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~l  131 (553)
                      ++.++.+..  ..|.+|..+  .+|...+...+..++..+...|+.++|++...+|-+  .--+...++++..|+.+++.
T Consensus        90 ~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~  167 (369)
T 3hgu_A           90 ADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI  167 (369)
T ss_dssp             TTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred             ccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence            455554433  156677665  558888888777766677777999999999988862  22334455568899855543


Q ss_pred             CCCCChh-----------------------HHHHHHhhcCceEEEEcchhhhhhhcccc---ccccCccEEEEecCC
Q 008787          132 YDTLGPG-----------------------AVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTSL  182 (553)
Q Consensus       132 ~~~~~~~-----------------------~l~~~l~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  182 (553)
                        ..++.                       .+..++++.++.+++..+.....+.+...   .....++.++.-++.
T Consensus       168 --~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~  242 (369)
T 3hgu_A          168 --DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTE  242 (369)
T ss_dssp             --CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSC
T ss_pred             --cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCcc
Confidence              33444                       66668999999999998887766654421   222455666655543

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=82.91  E-value=17  Score=37.05  Aligned_cols=122  Identities=7%  Similarity=-0.081  Sum_probs=83.9

Q ss_pred             CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH--HH-HHHHHHhcCCEEe
Q 008787           55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VE-AMEACNALSLICV  129 (553)
Q Consensus        55 ~p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~--~~-~~lA~~~~G~~~v  129 (553)
                      .|+.+|++..  -.|.+|..|  .+|...+...+.....   ..++.++|++...+|-+-.+  .. .+++++..|+..+
T Consensus       180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v  254 (539)
T 1mdb_A          180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV  254 (539)
T ss_dssp             CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred             CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence            4566665543  145555554  6788888776655544   34788999998888865433  32 4788899999988


Q ss_pred             eCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccc---cccccCccEEEEecCC
Q 008787          130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL  182 (553)
Q Consensus       130 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  182 (553)
                      ..+ ..+++.+...+++.++.+++..+.....+.+..   ......++.++.-++.
T Consensus       255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~  309 (539)
T 1mdb_A          255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK  309 (539)
T ss_dssp             ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred             ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence            765 467888999999999999998887766654432   2234566666666554

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=82.35  E-value=6.2  Score=38.01  Aligned_cols=131  Identities=18%  Similarity=0.113  Sum_probs=82.7

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh-HHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEA  117 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~-~~~~  117 (553)
                      .....+.+..|..   |.+|++..  -.|.+|..|  .+|.+.+...+..++.   ..++.++|++...+|-+-. .+..
T Consensus        24 ~~~~~~~~~~w~~---d~~a~Il~--TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~   95 (358)
T 4gs5_A           24 FAQAYDFMEKWLG---GAREFVLH--TSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMM   95 (358)
T ss_dssp             HHHHHHHHHHHHH---TCSEEEEE--EECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHH
T ss_pred             ccchhhHhhccCC---CCCEEEEE--CCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHH
Confidence            3445556665543   55555432  156777765  7899888776655544   3488999999988876533 2444


Q ss_pred             HHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccc--cccccCccEEEEecCC
Q 008787          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD--CRSAQRLRVMVCFTSL  182 (553)
Q Consensus       118 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  182 (553)
                      ++..+..|+..+...+....   ...+++.++..+...+.....+.+..  ......++.++.-+..
T Consensus        96 ~~~~l~~g~~~~~~~~~~~~---~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~  159 (358)
T 4gs5_A           96 LVRGMELDWELTVTEPTANP---LAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAP  159 (358)
T ss_dssp             HHHHHHHTCEEEEECCCSCT---TTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSC
T ss_pred             HHHHHHhCcEEEecCccccH---HHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccC
Confidence            56667788887777654332   34678889999988887766654432  2234556666665544

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=80.19  E-value=17  Score=37.27  Aligned_cols=121  Identities=11%  Similarity=-0.036  Sum_probs=82.2

Q ss_pred             CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH---HHHHHHhcCCEEee
Q 008787           56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE---AMEACNALSLICVP  130 (553)
Q Consensus        56 p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~---~~lA~~~~G~~~v~  130 (553)
                      ++.+|++..  -.|.+|..|  .+|...+...+..++..   .++.++|++...+|-...+-.   .+++++..|+..+.
T Consensus       190 ~~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~  264 (544)
T 3o83_A          190 ADEVAFFQL--SGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVM  264 (544)
T ss_dssp             TTSEEEEEE--CCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEE
T ss_pred             ccceEEEEE--CCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEE
Confidence            455665543  145566554  67888887776665543   488999999998876544332   47888899999887


Q ss_pred             CCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccc---cccccCccEEEEecCC
Q 008787          131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL  182 (553)
Q Consensus       131 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  182 (553)
                      .+. ..+..+...+++.++..++..+.....+.+..   ......++.++.-++.
T Consensus       265 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~  318 (544)
T 3o83_A          265 APN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGAS  318 (544)
T ss_dssp             CSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSC
T ss_pred             CCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCC
Confidence            654 57888889999999999999887766554432   2233566666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	553
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	7e-66
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	2e-59
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	4e-54
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	5e-46
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	3e-39
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	3e-38
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	8e-32

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  223 bits (570), Expect = 7e-66
 Identities = 85/529 (16%), Positives = 167/529 (31%), Gaps = 74/529 (13%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
            D  LN A +     +Q+      + W      +       +Y+E++ +V +  + L   
Sbjct: 67  EDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHI---SYRELHRDVCRFANTLLDL 123

Query: 97  GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
           G + G  V IY    P+   AM AC  +  +   ++    P AV   +  +    V   D
Sbjct: 124 GIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITAD 183

Query: 157 KKVKELLSPDCRSA-----QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211
           + V+   S   +       +   V      +  ++    +        W   L      E
Sbjct: 184 EGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPE 243

Query: 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
            +       +   I+YTSG++G PKGV+ T      + +    ++  +       D+Y  
Sbjct: 244 HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY----HPGDIYWC 299

Query: 272 FLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEK 325
              +  +       Y     GA+   + G         +   + + +  +L   P     
Sbjct: 300 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR- 358

Query: 326 IHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 385
                                       A M  G K  E +  +               L
Sbjct: 359 ----------------------------ALMAEGDKAIEGTDRS--------------SL 376

Query: 386 RLVISGGAPLSTEVEEFLRVTC---CAFLVQGYGLTETCGPTTVCFPDEMCM-VGTAGPV 441
           R++ S G P++ E  E+           +V  +  TET G      P  + +  G+A   
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRP 436

Query: 442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESII---DGWFH 496
               +  L  V   G  P +    G + +           + + +   ++        + 
Sbjct: 437 FFGVQPAL--VDNEG-HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 493

Query: 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDV 545
           +GD  +   +G   I  R  +++ +S G  +    +E+     P I + 
Sbjct: 494 SGDGARRDEDGYYWITGRVDDVLNVS-GHRLGTAEIESALVAHPKIAEA 541

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  203 bits (518), Expect = 2e-59
 Identities = 119/528 (22%), Positives = 185/528 (35%), Gaps = 87/528 (16%)

Query: 33  GFPSV--DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIV 90
            FPS   D +LN  WD    +   +    ++          G     TY EVY+   +++
Sbjct: 1   AFPSTMMDEELNL-WDFLERAAALFGRKEVV-----SRLHTGEVHRTTYAEVYQRARRLM 54

Query: 91  SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEID 150
             LRA G   G RV   G N  + +EA  A   +  +       L P  + +IL+HAE D
Sbjct: 55  GGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE-D 113

Query: 151 FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
            V + D  +  L+       + ++  V       E                         
Sbjct: 114 KVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE--------------GYLAYEEALGE 159

Query: 211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270
           E + +       C + YT+GT+G PKGVV +H  +                 ++  DV L
Sbjct: 160 EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVL 216

Query: 271 SFLPLAHILDRVIEEYFFRRGASVGYY--HGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
             +P+ H+    +       GA         D  +L +       T  AGVP V+     
Sbjct: 217 PVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW----- 271

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
                                                     L  + +        LR +
Sbjct: 272 ----------------------------------------LALADYLESTGHRLKTLRRL 291

Query: 389 ISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP----------DEMCMVGTA 438
           + GG+     +           + QGYGLTET       F           +++ +    
Sbjct: 292 VVGGSAAPRSLIARFERMGVE-VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKT 350

Query: 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHT 497
           G       LR+ +  E    P D    GEV ++G  +  GYY N + TR ++  DG+F T
Sbjct: 351 GLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 409

Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDV 545
           GDI      G V+I DR K+LIK   GE+++   LEN     P +++ 
Sbjct: 410 GDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHPKVKEA 456

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  191 bits (487), Expect = 4e-54
 Identities = 87/534 (16%), Positives = 173/534 (32%), Gaps = 81/534 (15%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
           ++  LN  ++       K P  + + +     G+       TYKE+ EEV Q+   L  S
Sbjct: 54  LNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSI---TYKELLEEVCQVAQVLTYS 110

Query: 97  -GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ 155
            G   G  V +Y    P+ +  + A + +  I   ++      ++   ++  +   V   
Sbjct: 111 MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT 170

Query: 156 DK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLG 207
           D+        + K ++    R    +R ++ +     +    +V                
Sbjct: 171 DESNRGGKVIETKRIVDDALRETPGVRHVLVYR----KTNNPSVAFHAPRDLDWATEKKK 226

Query: 208 KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD 267
                   P    +   ++YTSG++G PKGV  +            L   ++      +D
Sbjct: 227 YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGA----LLTMRYTFDTHQED 282

Query: 268 VYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPR 321
           V+ +   +  I       Y     G +   + G     + +   D + E K T     P 
Sbjct: 283 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPT 342

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
                           R L+R     +  + L                            
Sbjct: 343 AL--------------RLLKRAGDSYIENHSLK--------------------------- 361

Query: 382 GGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVCFPDEMCMV--G 436
              LR + S G P++ EV E+           +V  Y  TE+           +  +  G
Sbjct: 362 --SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPG 419

Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTRESII--- 491
           +A       +  + + P  G         G + V+    +     +KN D   ++ +   
Sbjct: 420 SASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPY 478

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDV 545
            G++ TGD      +G + I+ R  +++ +S G  ++   +E      PI+ + 
Sbjct: 479 PGYYFTGDGAAKDKDGYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIVAEC 531

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  167 bits (423), Expect = 5e-46
 Identities = 112/512 (21%), Positives = 187/512 (36%), Gaps = 70/512 (13%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRP----FVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA 98
           TA +    ++++Y         P    F D      +  TY E +E  +++  A++  G 
Sbjct: 18  TAGEQLHKAMKRYAL------VPGTIAFTDAHIEVNI--TYAEYFEMSVRLAEAMKRYGL 69

Query: 99  EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK 158
               R+ +   N  Q+   +     + +   P  D      +   ++ ++   VFV  K 
Sbjct: 70  NTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKG 129

Query: 159 VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ 218
           ++++L+      ++L ++     + ++      Q+     +        + + +     +
Sbjct: 130 LQKILN----VQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDR 185

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
              I  IM +SG++G PKGV L H T     S     +  F +++  D   LS +P  H 
Sbjct: 186 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTAILSVVPFHHG 243

Query: 279 LDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
                   +   G   V  Y  +       L + K      VP +F              
Sbjct: 244 FGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFS------------- 290

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                       K  L                               L  + SGGAPLS 
Sbjct: 291 ---------FFAKSTLIDKYDL-----------------------SNLHEIASGGAPLSK 318

Query: 398 E-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
           E  E   +      + QGYGLTET     +  P+     G  G V  + E ++ ++    
Sbjct: 319 EVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGK 377

Query: 457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
              ++    GE+CVRG  + SGY  NP+ T   I  DGW H+GDI     +    I+DR 
Sbjct: 378 TLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRL 435

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDVSI 547
           K+LIK   G  VA   LE++    P I D  +
Sbjct: 436 KSLIKYK-GYQVAPAELESILLQHPNIFDAGV 466

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  147 bits (372), Expect = 3e-39
 Identities = 85/505 (16%), Positives = 144/505 (28%), Gaps = 75/505 (14%)

Query: 41  LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100
           + T  ++   +  + P          +          T+ E+   V  + + L A G  P
Sbjct: 1   MQTVNEMLRRAATRAPD------HCALAVPARGLRL-THAELRARVEAVAARLHADGLRP 53

Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
             RV +   N    V A+ A + L  +   L   L    +  ++   E+    +   +  
Sbjct: 54  QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV 113

Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
                   S  R+  +                    PYS+           +E    +P 
Sbjct: 114 ADAIFQSGSGARIIFLGDLVRDGE------------PYSYGP--------PIEDPQREPA 153

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
               I YTSGT+G PK             S V     Q   +    +V L  +PL H++ 
Sbjct: 154 QPAFIFYTSGTTGLPKAA---IIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG 210

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                              +                                        
Sbjct: 211 FFAVLVAALALDGTYVVVEEFRP------------------------------------- 233

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
                  + + ++  +       +A   A   A   +K      LR V   GA +   V 
Sbjct: 234 -VDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK---LDSLRHVTFAGATMPDAVL 289

Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL 460
           E +        V  YG TE      +  P     +       V     +     +     
Sbjct: 290 ETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVR---IVRIGGGVDEIVA 346

Query: 461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
           +      +     + F GY   P  T E + DGW+ T D+    P G V+I+ R  ++I 
Sbjct: 347 NGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMII 406

Query: 521 ISQGEYVALEYLENVYCVAPIIEDV 545
              GE +    +E V   AP + +V
Sbjct: 407 S-GGENIHPSEIERVLGTAPGVTEV 430

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  145 bits (365), Expect = 3e-38
 Identities = 81/510 (15%), Positives = 160/510 (31%), Gaps = 98/510 (19%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T   +F   V K P N  +      + +       TY E+  +  Q+       G     
Sbjct: 24  TIHQLFEEQVSKRPNNVAIVCE---NEQL------TYHELNVKANQLARIFIEKGIGKDT 74

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
            VGI           + A        VP+        + +ILD ++   +  Q   V  +
Sbjct: 75  LVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI 134

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNI 222
                                       +Q   +   ++E     +      +P +  ++
Sbjct: 135 --------------------------HNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDL 168

Query: 223 CTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV 282
             ++YTSGT+G+PKG +L H+ I+           +    +T  D    F  ++      
Sbjct: 169 AYVIYTSGTTGNPKGTMLEHKGISNLK-----VFFENSLNVTEKDRIGQFASISFDASVW 223

Query: 283 IEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
                   GAS+                                        ++      
Sbjct: 224 EMFMALLTGASLYIIL------------------------------------KDTINDFV 247

Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
           +    + + ++  + +            +L+ +            +I+ G+  S  +   
Sbjct: 248 KFEQYINQKEITVITLPPTYVVHLDPERILSIQT-----------LITAGSATSPSLVNK 296

Query: 403 LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD 462
            +       +  YG TET    T     +  +  +    +     ++  V E        
Sbjct: 297 WKEKVT--YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENL-QLKSV 353

Query: 463 PPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIIDRK 515
              GE+C+ G+ L  GY+K P+LT +  +       +  + TGD  + L +G ++ + R 
Sbjct: 354 GEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 413

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDV 545
            N +KI  G  V LE +E++      I + 
Sbjct: 414 DNQVKIR-GHRVELEEVESILLKHMYISET 442

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  127 bits (318), Expect = 8e-32
 Identities = 86/507 (16%), Positives = 157/507 (30%), Gaps = 78/507 (15%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T  D+      KY        R  +    G   W +Y+E+     ++ +  +  G +   
Sbjct: 26  TFGDLLRDRAAKYGD------RIAIT--CGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
           RV +   N  ++ E + A   L  + V    +     + +  + AE     + D      
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ--PF 220
                R  Q               K   ++  I     +EFL L  ++   +  P+    
Sbjct: 137 YRSLARQVQ--------------SKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           ++  +  + G++G  K +  TH+     +             +    +    +   + L 
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTV---YLAALPMAHNYPLS 239

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                     G  V                                            P 
Sbjct: 240 SPGVLGVLYAGGRVVLSP---------------------------------------SPS 260

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
               F  + + K+    +             +     +      L+++  GGA  S E  
Sbjct: 261 PDDAFPLIEREKVTITALVPPL-----AMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315

Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSP 459
             ++      L Q +G+ E     T     E  +V T G P+S Y E R+    +     
Sbjct: 316 RRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRV--WDDHD-RD 372

Query: 460 LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRKKNL 518
           +     G +  RG     GYYK  +    S  + G++ TGDI ++  +G + +  R K+ 
Sbjct: 373 VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ 432

Query: 519 IKISQGEYVALEYLENVYCVAPIIEDV 545
           I    GE VA E +EN     P + D 
Sbjct: 433 INRG-GEKVAAEEVENHLLAHPAVHDA 458

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	553
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.3e-65  Score=549.47  Aligned_cols=451  Identities=16%  Similarity=0.209  Sum_probs=363.4

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~  121 (553)
                      +-..++|+++++.+||++|+++.   ....+..+++||+||.+++.++|++|+++|+++||+|+++++|++++++++|||
T Consensus        72 N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~  148 (643)
T d1pg4a_          72 NLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC  148 (643)
T ss_dssp             CHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHH
Confidence            44466788899999999999986   444556689999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhh---------hhccc-cccccCccEEEEecCCchHHHHHHh
Q 008787          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE---------LLSPD-CRSAQRLRVMVCFTSLTAEQKEMAV  191 (553)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  191 (553)
                      +++|++++|+++..+++++.+++++++++++|+++.....         ..... ......+..++++.......    .
T Consensus       149 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~----~  224 (643)
T d1pg4a_         149 ARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI----D  224 (643)
T ss_dssp             HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC----C
T ss_pred             HHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccc----c
Confidence            9999999999999999999999999999999987653211         11111 11234555666665432110    0


Q ss_pred             hCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhh-chhhhccccCCCCCCcEEE
Q 008787          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYL  270 (553)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~~~  270 (553)
                      ........+....... .........+++++++|+|||||||.||+|++||++++..... ....+     ++..+|+++
T Consensus       225 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-----~~~~~d~~~  298 (643)
T d1pg4a_         225 WQEGRDLWWRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIYW  298 (643)
T ss_dssp             CCBTTEEEHHHHHTTS-CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEEE
T ss_pred             cccccchhhhhhhccc-CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh-----CCCCCCEEE
Confidence            0011223344444333 2334445568899999999999999999999999997655443 33334     678899999


Q ss_pred             EecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHH
Q 008787          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (553)
Q Consensus       271 ~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~  344 (553)
                      +..|++|.+|+.. ++.+++.|++++++++     ++..+++.++++++|+++++|+++..|++....            
T Consensus       299 ~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~------------  366 (643)
T d1pg4a_         299 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK------------  366 (643)
T ss_dssp             ECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG------------
T ss_pred             EeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcch------------
Confidence            9999999999876 5567999999999764     789999999999999999999999988642111            


Q ss_pred             HHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC---CceEeeeccccCC
Q 008787          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETC  421 (553)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~i~~~YG~tE~g  421 (553)
                                             ..+..+        +++||.+++||+++++++.+++.+.++   +++++.||+||+|
T Consensus       367 -----------------------~~~~~d--------l~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g  415 (643)
T d1pg4a_         367 -----------------------AIEGTD--------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG  415 (643)
T ss_dssp             -----------------------GTTTCC--------CTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGS
T ss_pred             -----------------------hccccC--------CCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhcc
Confidence                                   011111        248999999999999999999999884   6799999999999


Q ss_pred             CceeeccCCC-ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEec--CCccccccCChhhhhhhc---cCCcc
Q 008787          422 GPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWF  495 (553)
Q Consensus       422 ~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~--~~~~~gy~~~~~~~~~~~---~~g~~  495 (553)
                      +.++...+.. ..+.+++|+|++|++++++| +++.  +++.++.|||+|+|  |+++.||+++++.+.+.+   .+|||
T Consensus       416 ~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~--~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~  492 (643)
T d1pg4a_         416 GFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGH--PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY  492 (643)
T ss_dssp             SCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCC--BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSE
T ss_pred             ceEEecCCCccCCCCCccccccCCCEEEEEC-CCCC--CCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeE
Confidence            8777654433 44568999999999999999 6554  45567899999999  568899999999887765   58999


Q ss_pred             ccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       496 ~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      +|||+|++|+||+|+++||.+|+|++ +|++|+|.|||++|.+||+|.||+|+|.++
T Consensus       493 ~TGDl~~~d~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d  548 (643)
T d1pg4a_         493 FSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPH  548 (643)
T ss_dssp             EEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEE
T ss_pred             EcCCEEEECCCceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEC
Confidence            99999999999999999999999997 799999999999999999999999999864

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.8e-64  Score=531.25  Aligned_cols=442  Identities=25%  Similarity=0.334  Sum_probs=360.0

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ...||+++|+++++++||++|+++.     .+++.+++||+||.+++.++|+.|.++|+++||+|+++++|++++++++|
T Consensus         9 ~~~~l~~~l~~~a~~~pd~~av~~~-----~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l   83 (534)
T d1v25a_           9 EELNLWDFLERAAALFGRKEVVSRL-----HTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF   83 (534)
T ss_dssp             CCCCTHHHHHHHHHHSTTCEEEEEC-----TTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHcCCCeEEEEe-----cCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHH
Confidence            4558999999999999999999875     34667889999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeee
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (553)
                      ||+++|++++|+++.++.+++.++++.+++++++++........... .........+........          ....
T Consensus        84 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~  152 (534)
T d1v25a_          84 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAPE----------GYLA  152 (534)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCCT----------TCEE
T ss_pred             HHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHh-hcccccceeEEeeccccc----------cccc
Confidence            99999999999999999999999999999999999988777654433 333445555554443211          0111


Q ss_pred             HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHH
Q 008787          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (553)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  279 (553)
                      ....    ...........++++++++|||||||.||+|.++|.+++..........   .......+++++.+|++|.+
T Consensus       153 ~~~~----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~  225 (534)
T d1v25a_         153 YEEA----LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD---GTALSEKDVVLPVVPMFHVN  225 (534)
T ss_dssp             HHHH----CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTT---TTCCCTTCEEEECSCTTSHH
T ss_pred             cccc----ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhc---ccccccccccccccchhhhc
Confidence            1111    0122334456788999999999999999999999999986654433222   22567889999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 008787          280 DRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (553)
Q Consensus       280 g~~~~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (553)
                      ++...+..+..|+++++...  ++..+...+.++++|.+.++|.++..+++......                       
T Consensus       226 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~-----------------------  282 (534)
T d1v25a_         226 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG-----------------------  282 (534)
T ss_dssp             HHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT-----------------------
T ss_pred             cccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhcccc-----------------------
Confidence            99888888778887777654  89999999999999999999999998876433221                       


Q ss_pred             ccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCc-----
Q 008787          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-----  432 (553)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~-----  432 (553)
                                            ...++||.+++||++++++..+++++. +..+++.||+||++..+........     
T Consensus       283 ----------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~-~~~i~~~yG~te~~~~~~~~~~~~~~~~~~  339 (534)
T d1v25a_         283 ----------------------HRLKTLRRLVVGGSAAPRSLIARFERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLS  339 (534)
T ss_dssp             ----------------------CCCSSCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGSSEEEECCCCGGGTTSC
T ss_pred             ----------------------ccccceeEEEEecCCCCHHHHHHHHHh-CCeeeeeccccccccceeecccCccccccC
Confidence                                  112589999999999999999999865 9999999999999998776543321     


Q ss_pred             -----cccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccC
Q 008787          433 -----CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPN  506 (553)
Q Consensus       433 -----~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~d  506 (553)
                           ...+++|+|+||++++|+| +++...+.+.++.|||+|+|++++.||+++++.+...+ .||||+|||+|++|+|
T Consensus       340 ~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~  418 (534)
T d1v25a_         340 EEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE  418 (534)
T ss_dssp             HHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTT
T ss_pred             ccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCC
Confidence                 2346899999999999999 77877877778999999999999999999999999998 8999999999999999


Q ss_pred             CcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |+|++.||.+|+|++ +|++|+|.+||++|.+||+|.||+|+|.++
T Consensus       419 G~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~  463 (534)
T d1v25a_         419 GYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPH  463 (534)
T ss_dssp             CCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEEC
T ss_pred             ccEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEC
Confidence            999999999999997 899999999999999999999999999765

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.6e-64  Score=538.50  Aligned_cols=455  Identities=17%  Similarity=0.212  Sum_probs=361.9

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~-~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      +...++|+++++++||++|+++.   .+.++..+++||+||.++++++|++|+ ++|+++||+|+++++|++++++++||
T Consensus        59 N~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA  135 (640)
T d1ry2a_          59 NACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLA  135 (640)
T ss_dssp             CHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            45688999999999999999986   445566689999999999999999997 67999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhh--------hhccccccccCccEEEEecCCchHHHHHHhh
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE--------LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (553)
                      |+++|++++|+++.++++++.++++++++++++++......        .........................   ...
T Consensus       136 ~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  212 (640)
T d1ry2a_         136 ISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---VAF  212 (640)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---CCC
T ss_pred             hccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccc---ccc
Confidence            99999999999999999999999999999999988753211        1111112223333333332221100   000


Q ss_pred             CCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEe
Q 008787          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (553)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (553)
                      .......+....... .......+..++++++|+|||||||.||||+++|.+++..........    ..+..+|++++.
T Consensus       213 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~----~~~~~~d~~l~~  287 (640)
T d1ry2a_         213 HAPRDLDWATEKKKY-KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT----FDTHQEDVFFTA  287 (640)
T ss_dssp             CSSSEEEHHHHHTTS-CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH----SCCCSSCEEEEC
T ss_pred             ccccccccccccccc-ccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhh----cCCCcccceeec
Confidence            011122222222222 233344456788999999999999999999999999877655443322    267889999999


Q ss_pred             cChHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 008787          273 LPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (553)
Q Consensus       273 ~p~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (553)
                      +|++|.+|+.. ++.++..|+++++.++     ++..+++.++++++|+++++|+++..|.+...               
T Consensus       288 ~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---------------  352 (640)
T d1ry2a_         288 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD---------------  352 (640)
T ss_dssp             SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT---------------
T ss_pred             cchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccc---------------
Confidence            99999999875 5668999999888764     78999999999999999999999988753110               


Q ss_pred             HHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC---CceEeeeccccCCCc
Q 008787          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCGP  423 (553)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~i~~~YG~tE~g~~  423 (553)
                                          ...+..++        ++||.+++||+++++++.+++.+.+|   .++++.||+||++..
T Consensus       353 --------------------~~~~~~~l--------~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~  404 (640)
T d1ry2a_         353 --------------------SYIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSH  404 (640)
T ss_dssp             --------------------TSSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSC
T ss_pred             --------------------cccccCCC--------CceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccc
Confidence                                00111112        48999999999999999999999885   469999999999987


Q ss_pred             eeeccCCC--ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEec--CCccccccCChhhhhhhc---cCCccc
Q 008787          424 TTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFH  496 (553)
Q Consensus       424 ~~~~~~~~--~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~  496 (553)
                      ........  ....+++|+|+||++++|+| ++++....+.++.|||++++  |+++.||+++++.+.+.|   .+|||+
T Consensus       405 ~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~  483 (640)
T d1ry2a_         405 LVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYF  483 (640)
T ss_dssp             SEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEE
T ss_pred             cccccCCCcCCCCCcccccccCCceEEEEe-CCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEE
Confidence            76654433  34568999999999999999 66665655566779999998  689999999999998887   358999


Q ss_pred             cCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       497 TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |||+|++|+||+|+|+||.+|+|++ +|++|+|.|||++|.+||+|.||+|+|.++
T Consensus       484 TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d  538 (640)
T d1ry2a_         484 TGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFND  538 (640)
T ss_dssp             EEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCC
T ss_pred             cCCceeECCCCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEC
Confidence            9999999999999999999999996 899999999999999999999999999875

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.1e-62  Score=519.79  Aligned_cols=446  Identities=25%  Similarity=0.304  Sum_probs=353.8

Q ss_pred             CCcccHHHHHHHHHHcCC---CCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 008787           39 SDLNTAWDIFSMSVQKYP---GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (553)
Q Consensus        39 ~~~~~l~~~l~~~a~~~p---~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~  115 (553)
                      .+..++.+.|.+++++++   +.+|+++.     ..+  +++||+||.+++.++|..|+++|+++||+|+++++|+++++
T Consensus        14 ~~~~t~~~~l~~~~~~~~~~P~~~a~~d~-----~~~--~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~   86 (541)
T d1lcia_          14 LEDGTAGEQLHKAMKRYALVPGTIAFTDA-----HIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFF   86 (541)
T ss_dssp             CCSSCHHHHHHHHHHHHHTSTTCEEEEET-----TTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTH
T ss_pred             CCCCCHHHHHHHHHHhhCCCCCeEEEEeC-----CCC--eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHH
Confidence            345789999999998884   44555532     222  57999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCc
Q 008787          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (553)
Q Consensus       116 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (553)
                      +++|||+++|++++|+++.++.+++.++++.++++++|++++..+.+.+.. ...+....+++++....         ..
T Consensus        87 v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~  156 (541)
T d1lcia_          87 MPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD---------YQ  156 (541)
T ss_dssp             HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC---------BT
T ss_pred             HHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhcc-ccccccceeeeecCCcc---------cc
Confidence            999999999999999999999999999999999999999998877765544 34466667777655422         11


Q ss_pred             eeeeHHHHHhccc------ccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEE
Q 008787          196 KPYSWDEFLHLGK------VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (553)
Q Consensus       196 ~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~  269 (553)
                      ....+........      ....+.....++++++|+|||||||.||+|++||++++.........+.  ......++++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~--~~~~~~~~~~  234 (541)
T d1lcia_         157 GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--GNQIIPDTAI  234 (541)
T ss_dssp             TBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEE
T ss_pred             ccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcc--cccccccccc
Confidence            2233333332211      1122233446788999999999999999999999999877665544331  1246678999


Q ss_pred             EEecChHHHHHHHHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 008787          270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (553)
Q Consensus       270 ~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (553)
                      ++.+|++|..++...+.++..++..+.... +.......+..+++|.+..+|..+..+++....                
T Consensus       235 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~----------------  298 (541)
T d1lcia_         235 LSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI----------------  298 (541)
T ss_dssp             EECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCG----------------
T ss_pred             cccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccc----------------
Confidence            999999999999888777777777777665 899999999999999999999999887642111                


Q ss_pred             HHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceEeeeccccCCCceeec
Q 008787          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVC  427 (553)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~i~~~YG~tE~g~~~~~~  427 (553)
                                           ...        ..+++|.+++||++++++..+++.+.++. .+++.||+||+++.++..
T Consensus       299 ---------------------~~~--------~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  349 (541)
T d1lcia_         299 ---------------------DKY--------DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT  349 (541)
T ss_dssp             ---------------------GGS--------CCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEEC
T ss_pred             ---------------------ccc--------ccccceEEEecccccccccccccccccCCceeeecCCccccCceEEec
Confidence                                 111        11489999999999999999999998865 589999999999888776


Q ss_pred             cCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccC
Q 008787          428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPN  506 (553)
Q Consensus       428 ~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~d  506 (553)
                      ..... ..+++|+|+||++++|+| ++.+ .+++.|+.|||+|+|+.++.||+++++.+...+ .+|||+|||+|++|+|
T Consensus       350 ~~~~~-~~~svG~p~~~~~~~i~d-~d~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~  426 (541)
T d1lcia_         350 PEGDD-KPGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDED  426 (541)
T ss_dssp             CCC----CCCCBEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTT
T ss_pred             CcccC-CCCccccccCCCEEEEEE-CCCC-cCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCC
Confidence            55543 348999999999999999 4433 566678999999999999999999999988887 6899999999999999


Q ss_pred             CcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |+++++||.+|+|++ +|++|+|.+||++|.+||+|.||+|+|.++
T Consensus       427 G~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~  471 (541)
T d1lcia_         427 EHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPD  471 (541)
T ss_dssp             CCEEEC-----CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred             eEEEEeeeecCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEC
Confidence            999999999999997 799999999999999999999999999754

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=3.3e-59  Score=490.03  Aligned_cols=416  Identities=20%  Similarity=0.251  Sum_probs=346.0

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (553)
Q Consensus        40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l  119 (553)
                      ...||.++|+++|+++||++|+++.    +     +++||+||.++++++|..|+++|+++||+|+++++|++++++++|
T Consensus        21 ~~~tl~~l~~~~a~~~Pd~~Al~~~----~-----~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~l   91 (514)
T d1amua_          21 RDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL   91 (514)
T ss_dssp             TTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhCCCCeEEEEC----C-----eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHH
Confidence            4789999999999999999999974    3     689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeee
Q 008787          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (553)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (553)
                      ||+++|++++|+++.++.+++.++++.++++++|++......+......     .........                 
T Consensus        92 a~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-----~~~~~~~~~-----------------  149 (514)
T d1amua_          92 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFN-----GQVEIFEED-----------------  149 (514)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCC-----SEEEECCCS-----------------
T ss_pred             HHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhccc-----ccccccccc-----------------
Confidence            9999999999999999999999999999999999998877665433211     111111111                 


Q ss_pred             HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHH
Q 008787          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (553)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  279 (553)
                          ............+..++++++|+|||||||.||++.+||.++..........+     .....+++++..|++|.+
T Consensus       150 ----~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  220 (514)
T d1amua_         150 ----TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDA  220 (514)
T ss_dssp             ----TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTH
T ss_pred             ----cccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-----cccccccccceecccccc
Confidence                01111122233445788999999999999999999999999999998877776     788999999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 008787          280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (553)
Q Consensus       280 g~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (553)
                      ++...+.++..|+++++...    +...++..+..+.++.+..+|..+.....                           
T Consensus       221 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  273 (514)
T d1amua_         221 SVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP---------------------------  273 (514)
T ss_dssp             HHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT---------------------------
T ss_pred             ccccccccccccccccccccccccchhhhhhhhhhhhcccccceeeecccccc---------------------------
Confidence            99888888888998888653    67788899999999999998876543100                           


Q ss_pred             HhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC--cc
Q 008787          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MC  433 (553)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~--~~  433 (553)
                                              ..+.+++.+++||+++++++.+++.+  +..+++.||+||++.+++......  ..
T Consensus       274 ------------------------~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~  327 (514)
T d1amua_         274 ------------------------ERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIG  327 (514)
T ss_dssp             ------------------------TTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCC
T ss_pred             ------------------------cccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeeccccccccC
Confidence                                    01248999999999999999887766  778999999999999877655443  23


Q ss_pred             ccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhcc-------CCccccCceEEEccC
Q 008787          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPN  506 (553)
Q Consensus       434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~-------~g~~~TGD~g~~~~d  506 (553)
                      ...+.|.+.++..+.+.| +++.  +++.|+.|||+|+||.++.||+++++.+.+.|.       +|||+|||+|++|+|
T Consensus       328 ~~~~~~~~~~~~~v~~~d-~~~~--~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~  404 (514)
T d1amua_         328 HSVPIGAPIQNTQIYIVD-ENLQ--LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSD  404 (514)
T ss_dssp             SSCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTT
T ss_pred             cccccccceeeeeEeeec-ccce--ecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCC
Confidence            345778899999999998 5554  444568999999999999999999999988772       679999999999999


Q ss_pred             CcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |+|+++||.+|+|++ +|++|+|.+||++|.+||+|.||+|+|.++
T Consensus       405 G~l~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~  449 (514)
T d1amua_         405 GNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKD  449 (514)
T ss_dssp             SCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEC
T ss_pred             CcEEEEecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEC
Confidence            999999999999997 799999999999999999999999999865

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1e-57  Score=481.10  Aligned_cols=433  Identities=18%  Similarity=0.176  Sum_probs=353.8

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 008787           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (553)
Q Consensus        42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~  121 (553)
                      .|+.++|+++|+++||++|+++.   +      +++||+||.+++.++|+.|+++|+++||+|+++++|++++++++|||
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~   95 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFAL   95 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence            69999999999999999999874   3      58999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhc----cccccccCccEEEEecCCchHHHHHHhhCCcee
Q 008787          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS----PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (553)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (553)
                      +++|++++|+++..+.+++.++++.++++++++++........    ......+.....+......            ..
T Consensus        96 ~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~  163 (536)
T d1mdba_          96 FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------EF  163 (536)
T ss_dssp             HHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT------------TS
T ss_pred             HHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccc------------cc
Confidence            9999999999999999999999999999999988654322111    1111111222222221111            11


Q ss_pred             eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHH
Q 008787          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (553)
Q Consensus       198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  277 (553)
                      .++.++.    .......+..++++++|+|||||||.||+|++||.++...+......+     .+..++++++..|++|
T Consensus       164 ~~~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~  234 (536)
T d1mdba_         164 LPLEDLH----TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH  234 (536)
T ss_dssp             EEGGGCC----CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred             cchhhcc----cCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-----cccccccccccccccc
Confidence            2222211    223344566889999999999999999999999999999999888777     7889999999999999


Q ss_pred             HHHHHH-HHH-HHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 008787          278 ILDRVI-EEY-FFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (553)
Q Consensus       278 ~~g~~~-~~~-~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (553)
                      .+++.. ... .+..|.+++..+. ++..++..+++++++.+..+|..+..+........                    
T Consensus       235 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  294 (536)
T d1mdba_         235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR--------------------  294 (536)
T ss_dssp             HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC--------------------
T ss_pred             ccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccc--------------------
Confidence            999864 333 4555676666655 99999999999999999999999988754322111                    


Q ss_pred             HHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccc
Q 008787          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (553)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~  434 (553)
                                               ...++++.+++||+++++...+++.+.++......|+.+|.+.............
T Consensus       295 -------------------------~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (536)
T d1mdba_         295 -------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEII  349 (536)
T ss_dssp             -------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHH
T ss_pred             -------------------------cccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccc
Confidence                                     1124899999999999999999999999999999999999877666655555555


Q ss_pred             cCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEEEe
Q 008787          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIID  513 (553)
Q Consensus       435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~G  513 (553)
                      .+++|.|+++....++..+++  .+++.++.|||+++|+.++.||+++++.+...+ .+|||+|||+|++++||+|++.|
T Consensus       350 ~~~~g~p~~~~~~~~v~~~~g--~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~G  427 (536)
T d1mdba_         350 VNTQGKPMSPYDESRVWDDHD--RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEG  427 (536)
T ss_dssp             HHCCCEESSTTCEEEEECTTS--CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEE
T ss_pred             cCCcccCCCCcceEEEEcCCC--CeecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecCC
Confidence            678999987665555552443  455567999999999999999999999988888 78999999999999999999999


Q ss_pred             cccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       514 R~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |.+|+|++ +|++|+|.+||++|.+||+|.+|+|||.++
T Consensus       428 R~~d~i~~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~  465 (536)
T d1mdba_         428 RAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPD  465 (536)
T ss_dssp             EGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred             CcceEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEc
Confidence            99999997 899999999999999999999999999753

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=1.5e-54  Score=452.58  Aligned_cols=430  Identities=20%  Similarity=0.219  Sum_probs=341.5

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (553)
Q Consensus        41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA  120 (553)
                      |+|+.++|+++|+++||++|+++.   +..    +++||+||.+++.++|++|+++|+++||+|+++++|++++++++||
T Consensus         1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   73 (503)
T d3cw9a1           1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (503)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence            579999999999999999999986   332    6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (553)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (553)
                      |+++|++++|+++.++++++.++++.++++++|++.......  ..... .....++.                     +
T Consensus        74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~--~~~~~-~~~~~~i~---------------------~  129 (503)
T d3cw9a1          74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD--AIFQS-GSGARIIF---------------------L  129 (503)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHH--HHHHT-TCCCEEEE---------------------H
T ss_pred             HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHH--HHhhh-cccccccc---------------------c
Confidence            999999999999999999999999999999999887643211  11111 11222222                     2


Q ss_pred             HHHHhccc----ccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChH
Q 008787          201 DEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (553)
Q Consensus       201 ~~l~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  276 (553)
                      .++.....    ..........++++++++|||||||.||++.++|.++..........+   .......+.+++.+|++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~  206 (503)
T d3cw9a1         130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLY  206 (503)
T ss_dssp             HHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTT
T ss_pred             hhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccc
Confidence            22222111    122333456788999999999999999999999999998887765543   12345668999999998


Q ss_pred             HHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 008787          277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (553)
Q Consensus       277 ~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (553)
                      |..+... .+.+...++.+++.+. ++..+...+..++++.+..+|..+..+..........                  
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  268 (503)
T d3cw9a1         207 HVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS------------------  268 (503)
T ss_dssp             SHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTT------------------
T ss_pred             cccccccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccccc------------------
Confidence            8888775 5556666777666665 9999999999999999999999998876533322111                  


Q ss_pred             HHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccc
Q 008787          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (553)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~  434 (553)
                                               ...++||.+++||++++++...++...++..+.+.||.+|++..+..........
T Consensus       269 -------------------------~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~  323 (503)
T d3cw9a1         269 -------------------------LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE  323 (503)
T ss_dssp             -------------------------CCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSE
T ss_pred             -------------------------ccccceEEEEeccccccccccccccccccccccccccccccceeeeecccccccc
Confidence                                     1114899999999999999999999999999999999999988777655544322


Q ss_pred             cCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEec-CCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEe
Q 008787          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (553)
Q Consensus       435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~-~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~G  513 (553)
                       ...+.+.+.....+.+ .  ....++.|+.|++.+.+ +....+|+++++.+.+.|.+|||+|||+|++|+||+|+++|
T Consensus       324 -~~~~~~~~~~~~~~~~-~--~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~G  399 (503)
T d3cw9a1         324 -MAPGFFSEVRIVRIGG-G--VDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILG  399 (503)
T ss_dssp             -EBCCTTCCEEEECTTS-C--TTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEE
T ss_pred             -ccccccccceeeeeec-c--cCcccCCCccccccccccccccccccCChhhhHHHhcCCceecccccccccCCeEEeCC
Confidence             3333333333333333 2  22344567889887776 56667899999999999999999999999999999999999


Q ss_pred             cccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV  552 (553)
Q Consensus       514 R~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~  552 (553)
                      |.+|+|++ +|++|+|.+||++|.+||+|.||+|+|.++
T Consensus       400 R~~d~ik~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~  437 (503)
T d3cw9a1         400 RVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLAD  437 (503)
T ss_dssp             ESSCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred             CcCCeEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEC
Confidence            99999997 799999999999999999999999999754