Citrus Sinensis ID: 008788

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550---
Protein Sequence
MAVEDEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSLGKFLK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEEcccccccccccEEEEcccccHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccEEEEEEEEEEccccccccccccEEEEEEccccccccccccEEEEEEEEEEccccEEEcccccccEEEEEccccccccHHHHHcccccccEEEEEEcccccccccccccccccccEEEEEEEEEEHHHccccccccEEEEEEEcccccccccccccccEEEEEEEEEEEcccccEEEccccccccccEEEEEcccccHHHHHHHHHccccccEEEEEEcccccccccccccccccccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEcccccEEEEEEEccccccccccccEEEEEEEEEEccccEEccccccccccccEEEEEEccccEHHHHHHHHHHcccccEEEEEEcccHcccccccccccccccccccEEEEEEEEEEccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEcccccccEEEEEEcccccHHHHHHHHHHcccccEEEEEEccccccccccccccccccEEEEEEEEEEccccccccccccEEEEEEEcccccccccccccccEEEEEEEEEEccccccEEEcccccccccEEEEEEccccccHHHHHHHHHcccccEEEEEEccHccccccccccccccccEEEEEEEEEEccccccccEEcccccHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mavededinpqkkkapseddkrrmkivpgslmkavmrpgggdstpsdgdqvayhctvrtldgvivestrseyggkgipirhvLGKSKILLGLlegiptmlkgevsmfkmkpqmhygeddcpvaapstfpkdeelhFEIEMIDFAKAKIIADDFGVVKKVINegqgwetprapyeVKAWISaktgdgklilshregepyfftfgksevpkglemgigtmtREEKAVIYVTsqyltpsplmpvvegceEVHFEVELVHLIQVRDMLGDGRLIKRRIrdgkgefpmdcplhdsllcvhykgmllneeKKVFYdtrvdndgqplefssgeglvpeGFEMCVRLMLpgeialvtcppdyaydkflrpanvpegaHIQWEIELlgfekpkdwtglsfdgIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDfnhvnpqddeegkvfvgkrNLLHLNVAACLLKLGECRKSIEACNKVLdanpahvkgLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSLGKFLK
Flexible Loop (DISEMBL)
mavededinpqkkkapseddkrrmkIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVrtldgvivestrseyggkgipirhvLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVInegqgwetprapYEVKAWISAKTGDGKLILSHREGEPYfftfgksevpkGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIqvrdmlgdgrLIKRRIRdgkgefpmdcPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTgnrlfkegkFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKvldanpahvkGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALsklkkqrrklkvrlenslkgcltrslgkflk
Low Complexity Region (SEG)
MAVEDEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRpgggdstpsdgdQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCeevhfevelvhlIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSklkkqrrklkvrlENSLKGCLTRSLGKFLK
Disordered region (IsUnstruct)
**************************************************VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE*******************************************************
Disordered Region (DISOPRED)
****************************GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCP*****TFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVIN****WETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP***E*GKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ*********NSL*GCLTRSLGKF**
Disordered Region (DISEMBL)
**********************RMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSLGKFLK
Disordered Region (DISPRO)
*********************RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVEDEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSLGKFLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	553	2.2.26 [Sep-21-2011]
Q7DMA9	635	Peptidyl-prolyl cis-trans	yes	no	0.994	0.866	0.749	0.0
Q38931	551	Peptidyl-prolyl cis-trans	no	no	0.851	0.854	0.298	2e-54
Q9FJL3	578	Peptidyl-prolyl cis-trans	no	no	0.915	0.875	0.297	6e-54
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.815	0.806	0.313	7e-53
Q95L05	457	Peptidyl-prolyl cis-trans	N/A	no	0.658	0.796	0.291	1e-30
Q9XSI2	457	Peptidyl-prolyl cis-trans	N/A	no	0.625	0.757	0.295	2e-30
Q9XSH5	457	Peptidyl-prolyl cis-trans	N/A	no	0.625	0.757	0.295	2e-30
Q9XT11	457	Peptidyl-prolyl cis-trans	N/A	no	0.625	0.757	0.292	3e-30
Q13451	457	Peptidyl-prolyl cis-trans	yes	no	0.658	0.796	0.286	7e-30
Q9TRY0	459	Peptidyl-prolyl cis-trans	yes	no	0.656	0.790	0.297	1e-29

>sp|Q7DMA9|PAS1_ARATH Peptidyl-prolyl cis-trans isomerase PASTICCINO1 OS=Arabidopsis thaliana GN=PAS1 PE=1 SV=2

 Score =  872 bits (2253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/554 (74%), Positives = 479/554 (86%), Gaps = 4/554 (0%)

Query: 1   MAVEDE---DINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTV 57
           MAV D+   +  P+KKK+ +EDDKRR KIVPGSL+KAV+RPGGGDS+P DGDQV YHCTV
Sbjct: 1   MAVGDQTEQNYLPKKKKSETEDDKRRKKIVPGSLLKAVVRPGGGDSSPVDGDQVIYHCTV 60

Query: 58  RTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGE 117
           RTLDGV+VESTRSE GG+G+PIR VLG SK++LGLLEGIPTM KGE++MFKMKP+MHY E
Sbjct: 61  RTLDGVVVESTRSESGGRGVPIRDVLGNSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAE 120

Query: 118 DDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKA 177
            DCPV+AP  FPKD+ELHFEIE++DF+KAKI +DD GV+KK++NEG+GWE+PR PYEVKA
Sbjct: 121 IDCPVSAPENFPKDDELHFEIELLDFSKAKIASDDLGVIKKILNEGEGWESPREPYEVKA 180

Query: 178 WISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSP 237
            ISAK+GDG +I SH E EPYFFTFGKSEVPKGLE+GIGTM R+EKAVIYV  QYLT SP
Sbjct: 181 RISAKSGDGHVIFSHTE-EPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRKQYLTESP 239

Query: 238 LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYK 297
           L+ + +  EEVHFEVELVH IQVRDMLGDGRLIKRRIRDG+GEFPMDCPL DS L VHYK
Sbjct: 240 LLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYK 299

Query: 298 GMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYD 357
           GMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEGFEMC RLMLPGEIALVTCPPDYAYD
Sbjct: 300 GMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYD 359

Query: 358 KFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELA 417
           KF RP  V EGAH+QWEIELLGFE P+DWTGL+F  IMDEA+KIR TGNRLFKEGKFELA
Sbjct: 360 KFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQSIMDEADKIRSTGNRLFKEGKFELA 419

Query: 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477
           KAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLNVAACLLK+GE RKSIE CNKVL+A 
Sbjct: 420 KAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAK 479

Query: 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLE 537
           P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDKSSE DATAAL KLK++ ++ + +  
Sbjct: 480 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKEQEAESKAR 539

Query: 538 NSLKGCLTRSLGKF 551
              KG   +  G+ 
Sbjct: 540 KQFKGLFDKRPGEI 553

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Essential protein regulating cell division, adhesion and elongation throughout the plant development and embryogenesis. Required for the spatial organization of apical meristems. Involved in the hormonal control of cell division and differentiation mediated by cytokinins and auxin. Regulates the function of NAC089 transcription factor by controlling its targeting to the nucleus upon plant cell division. Interacts with enzymes of the fatty acid elongase complex and favors the generation of very-long-chain fatty acids (VLCFAs) required for polar auxin transport and tissue patterning during plant development.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score =  213 bits (543), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 148/496 (29%), Positives = 246/496 (49%), Gaps = 25/496 (5%)

Query: 25  KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLG 84
           K +   L K +++ G G  TP +GD+V  H T   LDG   +S+R     +  P +  LG
Sbjct: 34  KEIQQGLKKKLLKEGEGYETPENGDEVEVHYTGTLLDGTKFDSSRD----RATPFKFTLG 89

Query: 85  KSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144
           + +++ G   GI TM KGE ++F +  ++ YGE      +P T P +  L F++E++ + 
Sbjct: 90  QGQVIKGWDIGIKTMKKGENAVFTIPAELAYGES----GSPPTIPANATLQFDVELLKWD 145

Query: 145 KAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGK 204
             K I  D GV KK++  G+ WE P+   EV     AK  DG ++      E   FT   
Sbjct: 146 SVKDICKDGGVFKKILAVGEKWENPKDLDEVLVKFEAKLEDGTVVGKSDGVE---FTVKD 202

Query: 205 SEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEG------CEEVHFEVELVHLI 258
                 L   + TM + EK ++ V  QY       P   G         +   +ELV   
Sbjct: 203 GHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWK 262

Query: 259 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQ 318
            V ++  D +++K+ +++G G    + P   +++ V   G L  ++  VF       + +
Sbjct: 263 TVSEVTDDNKVVKKVLKEGDG---YERPNEGAVVKVKLIGKL--QDGTVFLKKGHGENEE 317

Query: 319 PLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY---DKFLRPANVPEGAHIQWEI 375
           P EF + E  V +G +  V  M  GE+ALVT  P+YA+   +     A VP  + + +E+
Sbjct: 318 PFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEV 377

Query: 376 ELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD 435
           +LL F+K ++   ++ +  ++ A K +  GN  FK GK+ LA  +YEK ++   +     
Sbjct: 378 DLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFS 437

Query: 436 DEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG 495
           +EE K     +   +LN AAC LKL + +++ + C KVL+    +VK LYRR  AYM L 
Sbjct: 438 EEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELS 497

Query: 496 EFEEAQRDFEMMMKVD 511
           + + A+ D +  +++D
Sbjct: 498 DLDLAEFDVKKALEID 513

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score =  212 bits (540), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 159/535 (29%), Positives = 263/535 (49%), Gaps = 29/535 (5%)

Query: 9   NPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVEST 68
           N +   AP       M+I    L K +++      TP +GD+V  H T   LDG   +S+
Sbjct: 26  NDEADSAPYLKIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDGTKFDSS 85

Query: 69  RSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTF 128
           R     +G P +  LG+  ++ G   GI TM KGE ++F + P++ YGE      +P T 
Sbjct: 86  RD----RGTPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGE----TGSPPTI 137

Query: 129 PKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKL 188
           P +  L F++E+I +   K I  D GV KK+I EG+ WE P+   EV     A+  DG +
Sbjct: 138 PPNATLQFDVELIAWRSVKDICGDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGTI 197

Query: 189 ILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE-- 246
           +      E   FT  +      L   + TM R EK ++ V  QY       P  +G +  
Sbjct: 198 VGKSDGVE---FTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPASDGLQAA 254

Query: 247 -----EVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLL 301
                 +  ++ELV    V ++  D ++IK+ +++G+G    + P   +++ +   G L 
Sbjct: 255 IPPNATLQIDLELVSWKTVVEVTDDRKVIKKILKEGEG---YERPNEGAIVKLKLIGKL- 310

Query: 302 NEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY---DK 358
            +   VF     + D +P EF   E  V EG E  V  M  GE+AL+T  P+YA+   + 
Sbjct: 311 QDGTTVFVKKGHEEDEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYAFGSSES 370

Query: 359 FLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAK 418
               A +P  + + +E+EL+ F K K+   ++    ++ A K +  GN LFK GK+  A 
Sbjct: 371 KQELAVIPPNSTVYYEVELVSFIKEKESWDMNTQERIEAAGKKKEEGNVLFKAGKYARAS 430

Query: 419 AKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478
            +YE+ ++   + +  D+EE K     +   +LN AAC LKL + +++ +   KVL+ + 
Sbjct: 431 KRYERGVKYIEYDSTFDEEEKKKSKDLKIACNLNDAACKLKLKDYKEAAKLSTKVLEMDS 490

Query: 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLK 533
            +VK +YRR  AY+   + + A+ D +  +++D    PD      + KK + K+K
Sbjct: 491 RNVKAMYRRAHAYLETADLDLAELDIKKALEID----PDNKEVKIEYKKLKEKVK 541

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score =  208 bits (530), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 149/476 (31%), Positives = 243/476 (51%), Gaps = 25/476 (5%)

Query: 44  TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGE 103
           TP  GD+V  H T   LDG   +S+R     +    +  LG+ +++ G  +GI TM KGE
Sbjct: 56  TPEVGDEVEVHYTGTLLDGKKFDSSRD----RDDTFKFKLGQGQVIKGWDQGIKTMKKGE 111

Query: 104 VSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEG 163
            ++F + P++ YGE      +P T P +  L F++E++ +   + IA D G+ KK++ EG
Sbjct: 112 NALFTIPPELAYGES----GSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEG 167

Query: 164 QGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEK 223
             WE P+ P EV     A+  DG  ++S  EG    FT     +   L   + TM + EK
Sbjct: 168 DKWENPKDPDEVFVKYEARLEDG-TVVSKSEG--VEFTVKDGHLCPALAKAVKTMKKGEK 224

Query: 224 AVIYVTSQYLTPSPLMPVV-EG-----CEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDG 277
            ++ V  QY       P   EG        +  ++ELV    V ++  D +++K+ +++ 
Sbjct: 225 VLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEX 284

Query: 278 KGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCV 337
           +G    + P   +++ V   G L  ++  VF     D + +P EF + E  V EG +  V
Sbjct: 285 EG---YERPNEGAVVTVKITGKL--QDGTVFLKKGHD-EQEPFEFKTDEEAVIEGLDRAV 338

Query: 338 RLMLPGEIALVTCPPDYAY--DKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIM 395
             M  GE+ALVT PP+YAY   +  + A VP  + + +E+EL+ F K K+   L+    +
Sbjct: 339 LNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKDKESWDLNNSEKI 398

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           + A   +  GN LFK GK+  A  +YEK  +   +     ++E K     +   +LN AA
Sbjct: 399 EAAGTKKEEGNALFKSGKYARASKRYEKAAKFIEYDTSFSEDEKKQSKQLKITCNLNNAA 458

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
           C LKL + +++ + C KVL+ +  +VK LYRR  AY  L + E A+ D +  +++D
Sbjct: 459 CKLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYTQLADLELAEVDIKKALEID 514

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q95L05|FKBP5_CHLAE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Chlorocebus aethiops GN=FKBP5 PE=2 SV=1

 Score =  135 bits (339), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 187/388 (48%), Gaps = 24/388 (6%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGK-LILSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V      K  +GK    SH   EP+ F+ GKS+V K 
Sbjct: 30  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFNSSHDRNEPFVFSLGKSQVIKA 89

Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRL 269
            ++G+ TM + E   +    +Y   S   +P +     + FE+EL+   +  D+L DG +
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGSAGSVPKIPSNATLFFEIELLDF-KGEDLLEDGGI 148

Query: 270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL- 328
           I+R  R G+G      P   + + +H +G      +++F       D + + F+ GEG  
Sbjct: 149 IRRTKRKGEG---YSNPNEGATVEIHLEGRC---GERMF-------DCRDVAFTVGEGED 195

Query: 329 --VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
             +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct: 196 HDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query: 386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
              +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMRAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct: 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 506 MMMKVDKSSEPDATAALSKLKKQRRKLK 533
            +++V+    P   AA  ++   ++K K
Sbjct: 376 KVLEVN----PQNKAARLQISMCQKKAK 399

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP. Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Chlorocebus aethiops (taxid: 9534)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSI2|FKBP5_SAGOE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2

 Score =  134 bits (338), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 178/366 (48%), Gaps = 20/366 (5%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V    + K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNGKKFDSSHDRNEPFVFSIGKGQVIKA 89

Query: 211 LEMGIGTMTREEKAVIYVTSQY-LTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRL 269
            ++G+ TM + E   +    +Y    +  +P +     + FEVEL++  +  D+L DG +
Sbjct: 90  WDIGVSTMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLNF-KGEDLLEDGGI 148

Query: 270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL- 328
           I+R  R G+G      P   + + +H +G       +VF       D + + F+ GEG  
Sbjct: 149 IRRTKRRGEG---YSNPNEGARVQIHLEGRCGG---RVF-------DCRDVAFTVGEGED 195

Query: 329 --VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
             +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct: 196 HDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query: 386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
              +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct: 256 SWEMDTKEKLEQAAIVKEEGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct: 316 LLAAFLNLAMCYLKLREYAKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 506 MMMKVD 511
            +++V+
Sbjct: 376 KVLEVN 381

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saguinus oedipus (taxid: 9490)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSH5|FKBP5_SAIBB Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saimiri boliviensis boliviensis GN=FKBP5 PE=1 SV=1

 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 176/366 (48%), Gaps = 20/366 (5%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP     V    + K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 89

Query: 211 LEMGIGTMTREEKAVIYVTSQY-LTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRL 269
            ++G+ TM + E   +    +Y    +  +P +     + FEVEL+   +  D+L DG +
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF-KGEDLLEDGGI 148

Query: 270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL- 328
           I+R  R G+G      P   + + +H +G       +VF       D + + F+ GEG  
Sbjct: 149 IRRTKRRGEG---YSNPNEGARVQIHLEGRCGG---RVF-------DCRDVAFTVGEGED 195

Query: 329 --VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
             +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct: 196 HDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query: 386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
              +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct: 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 506 MMMKVD 511
            +++V+
Sbjct: 376 KVLEVN 381

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saimiri boliviensis boliviensis (taxid: 39432)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XT11|FKBP5_AOTNA Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Aotus nancymaae GN=FKBP5 PE=2 SV=2

 Score =  133 bits (335), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 177/366 (48%), Gaps = 20/366 (5%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V    + K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNGKKFDSSHDRNEPFVFSIGKGQVIKA 89

Query: 211 LEMGIGTMTREEKAVIYVTSQY-LTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRL 269
            ++G+ TM + E   +    +Y    +  +P +     + FE+EL+   +  D+L DG +
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEIELLDF-KGEDLLEDGGI 148

Query: 270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL- 328
           I+R  R G+G      P   + + +H +G       +VF       D + + F+ GEG  
Sbjct: 149 IRRTKRRGEG---YSNPNEGARVQIHLEGRCGG---RVF-------DCRDVAFTVGEGED 195

Query: 329 --VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
             +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct: 196 HDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query: 386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
              +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTLYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct: 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 506 MMMKVD 511
            +++V+
Sbjct: 376 KVLEVN 381

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Aotus nancymaae (taxid: 37293)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q13451|FKBP5_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Homo sapiens GN=FKBP5 PE=1 SV=2

 Score =  132 bits (332), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 182/388 (46%), Gaps = 24/388 (6%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V      K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 89

Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRL 269
            ++G+ TM + E   +    +Y   S   +P +     + FE+EL+   +  D+  DG +
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF-KGEDLFEDGGI 148

Query: 270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL- 328
           I+R  R G+G      P   + + +H +G          +D R       + F+ GEG  
Sbjct: 149 IRRTKRKGEG---YSNPNEGATVEIHLEGRCGGR----MFDCR------DVAFTVGEGED 195

Query: 329 --VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
             +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct: 196 HDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query: 386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
              +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct: 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 506 MMMKVDKSSEPDATAALSKLKKQRRKLK 533
            +++V+    P   AA  ++   ++K K
Sbjct: 376 KVLEVN----PQNKAARLQISMCQKKAK 399

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TRY0|FKBP4_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Bos taurus GN=FKBP4 PE=1 SV=4

 Score =  131 bits (330), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 121/407 (29%), Positives = 198/407 (48%), Gaps = 44/407 (10%)

Query: 152 DFGVVKKVINEGQGWETP----RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
           D GV+K +  EG G ETP    R       W+   T   K   S    + + F  GK EV
Sbjct: 30  DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGT---KFDSSLDRKDRFSFDLGKGEV 86

Query: 208 PKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELVHLIQVRDML 264
            K  ++ + TM   E   I    +Y   L  SP  P +     + FEVEL    +  D+ 
Sbjct: 87  IKAWDIAVATMKVGEVCHITCKPEYAYGLAGSP--PKIPPNATLVFEVELFEF-KGEDLT 143

Query: 265 G--DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEF 322
              DG +I+R    G+G      P   +L+ V  +G   ++   VF       D + L F
Sbjct: 144 EEEDGGIIRRIRTRGEG---YAKPNEGALVEVALEGYFKDQ---VF-------DRRELRF 190

Query: 323 SSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQWE 374
             GEG    +P G E  ++ M  GE ++V   P YA+     +KF     +P  A +++E
Sbjct: 191 EVGEGESMDLPCGLEKAIQRMEKGEHSIVYLKPRYAFGSAGKEKF----QIPPNAELKYE 246

Query: 375 IELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQ 434
           I L  FEK K+   +S +  ++++  ++  G   FKEGK++ A  +Y+K++    + +  
Sbjct: 247 IHLKSFEKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSF 306

Query: 435 DDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL 494
            DE+ +     R   HLN+A C LKL     +IE CNK L+ +  + KGL+RRG A++A+
Sbjct: 307 SDEDAEKAQALRLASHLNLAMCHLKLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAV 366

Query: 495 GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLK 541
            +F+ A+ DF+ ++++     P   AA ++L   +++++ +LE   K
Sbjct: 367 NDFDLARADFQKVLQL----YPSNKAAKAQLVVCQQRIRKQLEKEKK 409

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	553
356504332	635	PREDICTED: peptidyl-prolyl isomerase PAS	0.976	0.850	0.814	0.0
225440540	620	PREDICTED: peptidyl-prolyl isomerase PAS	0.976	0.870	0.801	0.0
255574548	618	fk506 binding protein, putative [Ricinus	0.989	0.885	0.789	0.0
224138922	621	predicted protein [Populus trichocarpa]	0.958	0.853	0.807	0.0
312282321	635	unnamed protein product [Thellungiella h	0.994	0.866	0.754	0.0
3080740	634	pasticcino 1-D [Arabidopsis thaliana]	0.994	0.867	0.750	0.0
449460353	589	PREDICTED: peptidyl-prolyl cis-trans iso	0.936	0.879	0.797	0.0
18409970	635	peptidyl-prolyl isomerase PASTICCINO1 [A	0.994	0.866	0.749	0.0
7630021	634	pasticcino 1 [Arabidopsis thaliana]	0.992	0.865	0.747	0.0
357112059	629	PREDICTED: peptidyl-prolyl isomerase PAS	0.978	0.860	0.716	0.0

>gi|356504332|ref|XP_003520950.1| PREDICTED: peptidyl-prolyl isomerase PASTICCINO1-like [Glycine max]

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/540 (81%), Positives = 483/540 (89%)

Query: 12  KKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSE 71
           KKK PSED+KR+ KIVPGSLMKA+MRPGGGD+ PSDGDQ+ YHCT+RTLDGV+VESTRS+
Sbjct: 14  KKKPPSEDEKRKKKIVPGSLMKALMRPGGGDAGPSDGDQIIYHCTIRTLDGVLVESTRSD 73

Query: 72  YGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKD 131
           YGGKGIPIRHVLGKSK+LLGLLEGIP+MLKGEV+MFKMKPQ+HYGEDDCPV+AP  FPKD
Sbjct: 74  YGGKGIPIRHVLGKSKMLLGLLEGIPSMLKGEVAMFKMKPQLHYGEDDCPVSAPDGFPKD 133

Query: 132 EELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILS 191
           +ELHFEIE+I+F KAK++ DD GVVKKV  EGQGWE+PR PYEVKA ISAKT  GKLI+S
Sbjct: 134 DELHFEIELIEFFKAKVVTDDLGVVKKVECEGQGWESPREPYEVKALISAKTVTGKLIMS 193

Query: 192 HREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFE 251
           H EGEPYFFTFGKSEVPKGLEM IGTM REEKAVIYVTSQYLT SPLMPV+EG +EVHFE
Sbjct: 194 HMEGEPYFFTFGKSEVPKGLEMAIGTMVREEKAVIYVTSQYLTESPLMPVIEGYDEVHFE 253

Query: 252 VELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDT 311
           VELVH IQVRDMLGDGRLIKRRIRDGKG+FPMDCPLHDSLL VHYKG +LNEEK+VFYDT
Sbjct: 254 VELVHFIQVRDMLGDGRLIKRRIRDGKGDFPMDCPLHDSLLRVHYKGTVLNEEKRVFYDT 313

Query: 312 RVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHI 371
           RVDND QPLEF SGEGLVPEGFEM VRLMLPGEIALVTCPPDYAYDKF RP NVPEGAHI
Sbjct: 314 RVDNDSQPLEFCSGEGLVPEGFEMSVRLMLPGEIALVTCPPDYAYDKFPRPLNVPEGAHI 373

Query: 372 QWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV 431
           QWEIELLGFE PKDWTGL F  IM+EAE IR TGNRLFKEGK+ELAKAKYEKVLR+FNHV
Sbjct: 374 QWEIELLGFETPKDWTGLDFKSIMNEAENIRNTGNRLFKEGKYELAKAKYEKVLREFNHV 433

Query: 432 NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491
           NPQDDEEGKVF   RNLLHLNVAAC LKLGEC+KSIE CNKVL+ANPAHVKGLYRRGMAY
Sbjct: 434 NPQDDEEGKVFADTRNLLHLNVAACHLKLGECKKSIETCNKVLEANPAHVKGLYRRGMAY 493

Query: 492 MALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSLGKF 551
           MA G+FEEA+ DF++MMKVDKS+E DATAAL KLK++ + ++ +     KG   +  G+ 
Sbjct: 494 MAAGDFEEARADFKVMMKVDKSTESDATAALQKLKQKEQDVEKKARKQFKGLFDKKPGEI 553

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440540|ref|XP_002273173.1| PREDICTED: peptidyl-prolyl isomerase PASTICCINO1 [Vitis vinifera] gi|297740281|emb|CBI30463.3| unnamed protein product [Vitis vinifera]

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/540 (80%), Positives = 484/540 (89%)

Query: 10  PQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTR 69
           PQKKK  SE +KR+ KIVPGSLMKAV+RPGGGDSTPSDGDQV YHCTVRTLDGV+VESTR
Sbjct: 13  PQKKKPLSEAEKRKKKIVPGSLMKAVIRPGGGDSTPSDGDQVIYHCTVRTLDGVVVESTR 72

Query: 70  SEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFP 129
           SE GGKG PIRHVLGKSK++LGLLEG+PTMLKGEV+M KMK ++HYGE +CP+  P  FP
Sbjct: 73  SECGGKGTPIRHVLGKSKMILGLLEGMPTMLKGEVAMLKMKAELHYGEANCPLMVPDNFP 132

Query: 130 KDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI 189
           KD+ELHFEIEM+DF K K+I+DD GV+KKVINEGQGWE+PR PYEVKAWISAKTG+GK I
Sbjct: 133 KDDELHFEIEMLDFFKVKVISDDLGVLKKVINEGQGWESPREPYEVKAWISAKTGEGKEI 192

Query: 190 LSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVH 249
           LSH +GEPYFFTFGKSEVPKGLEMG GTMTR EKAV+YVT+QY+T SPLMP++EG EEV 
Sbjct: 193 LSHTKGEPYFFTFGKSEVPKGLEMGTGTMTRGEKAVLYVTNQYITQSPLMPIIEGVEEVL 252

Query: 250 FEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFY 309
           FEVELVH IQVRDMLGDGRLIKRRI DG+G+FPMDCPLHDSLL VHYKGMLLNEEK VFY
Sbjct: 253 FEVELVHFIQVRDMLGDGRLIKRRIHDGRGDFPMDCPLHDSLLRVHYKGMLLNEEKTVFY 312

Query: 310 DTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGA 369
           +TRVDN+GQPLEF SGEGLVPEG EMCVRLMLPGEIALVTCPPDYAYDKF RPANVPEGA
Sbjct: 313 NTRVDNNGQPLEFGSGEGLVPEGLEMCVRLMLPGEIALVTCPPDYAYDKFPRPANVPEGA 372

Query: 370 HIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 429
           H+QWEIELLGFE PKDWTGL+F+ IMDEA+KIR TGNRLFKEGKFELAKAKYEKVLR+FN
Sbjct: 373 HVQWEIELLGFEMPKDWTGLNFEAIMDEADKIRGTGNRLFKEGKFELAKAKYEKVLREFN 432

Query: 430 HVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 489
           HVNPQDDEEGKVF+  RN LHLNVAAC LK+GECRKSIEACNKVLDA+PAHVK LYRRGM
Sbjct: 433 HVNPQDDEEGKVFLNARNSLHLNVAACYLKMGECRKSIEACNKVLDASPAHVKALYRRGM 492

Query: 490 AYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSLG 549
           AYM+ G+FEEA+ DF+MMM +DKS EPDATAAL KLK++ ++++ +  +  KG   +  G
Sbjct: 493 AYMSAGDFEEARNDFKMMMSIDKSCEPDATAALVKLKQKEQEVERKARSQFKGLFDKKPG 552

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574548|ref|XP_002528185.1| fk506 binding protein, putative [Ricinus communis] gi|223532397|gb|EEF34192.1| fk506 binding protein, putative [Ricinus communis]

 Score =  890 bits (2299), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/547 (78%), Positives = 487/547 (89%)

Query: 5   DEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVI 64
           +ED  P+KKK P+E DKRR KIVPGSLMKA MRPGGGD+ PSD DQV YHCTVRTLDGV+
Sbjct: 4   NEDFAPKKKKEPTESDKRRKKIVPGSLMKAEMRPGGGDAKPSDDDQVIYHCTVRTLDGVV 63

Query: 65  VESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124
           V+S++ EYGGKG PIR VLGKSK+LLGLLEG+ TMLKGEV+MFKMKP++HYGED CPV+ 
Sbjct: 64  VQSSKLEYGGKGTPIRQVLGKSKMLLGLLEGLTTMLKGEVAMFKMKPEVHYGEDGCPVSP 123

Query: 125 PSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTG 184
           PS+FPK++ELHFEIEM++F+K K++++D G++K+VINEGQGWE+PR PYEVKA ISAKTG
Sbjct: 124 PSSFPKEDELHFEIEMMNFSKVKVVSEDLGIIKQVINEGQGWESPREPYEVKARISAKTG 183

Query: 185 DGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEG 244
           DGK+ILS  +GEPYFFTFGKSEVPKGLEM IGTMTREEKAVIYVTS+YLT SPLM V EG
Sbjct: 184 DGKVILSCPQGEPYFFTFGKSEVPKGLEMAIGTMTREEKAVIYVTSEYLTESPLMSVAEG 243

Query: 245 CEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEE 304
           C+EVHFEVELVH  QVRDMLGDGRLIKRR+ DG+GEFPMDCPLHDSLL VHYKGMLL+EE
Sbjct: 244 CDEVHFEVELVHFTQVRDMLGDGRLIKRRLCDGRGEFPMDCPLHDSLLRVHYKGMLLDEE 303

Query: 305 KKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPAN 364
            KVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKF RPAN
Sbjct: 304 NKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFQRPAN 363

Query: 365 VPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKV 424
           VPEGAHIQWEIELLGFE PKDWTG+ F  IM EAEKIR TGNRL+KEGKFELAKAKYEKV
Sbjct: 364 VPEGAHIQWEIELLGFEMPKDWTGMDFPTIMGEAEKIRNTGNRLYKEGKFELAKAKYEKV 423

Query: 425 LRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL 484
           LR+FNHVNPQDDEEGKVFV  RNLL+LN+AAC LK+GEC+KSIE CNKVLDANPAH K L
Sbjct: 424 LREFNHVNPQDDEEGKVFVDTRNLLNLNLAACYLKMGECKKSIEYCNKVLDANPAHAKAL 483

Query: 485 YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCL 544
           YRRGMAYM  G+FEEA+RDFEMMMK DKSSE DA AAL KLK+++++++ ++    KG  
Sbjct: 484 YRRGMAYMTDGDFEEARRDFEMMMKGDKSSEADAMAALQKLKQKKQEVERKVRKQFKGLF 543

Query: 545 TRSLGKF 551
            +  G+ 
Sbjct: 544 DKKPGEI 550

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138922|ref|XP_002322935.1| predicted protein [Populus trichocarpa] gi|222867565|gb|EEF04696.1| predicted protein [Populus trichocarpa]

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/546 (80%), Positives = 482/546 (88%), Gaps = 16/546 (2%)

Query: 1   MAVED---EDINPQKK-KAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCT 56
           MA ED   ++  PQKK K P+E +KRR KIVPGSLMKA +RPGGGD+ PSDGDQV YHCT
Sbjct: 1   MAAEDGTAQEYVPQKKNKEPTETEKRRKKIVPGSLMKAEIRPGGGDARPSDGDQVIYHCT 60

Query: 57  VRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYG 116
           VRTL GV+VESTRSEYGG+G PIR VLGKSK+LLGLLEG+PTML GEV+MFKMKPQMHY 
Sbjct: 61  VRTLAGVVVESTRSEYGGEGTPIRQVLGKSKMLLGLLEGLPTMLSGEVAMFKMKPQMHYS 120

Query: 117 EDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVK 176
           E DCPV+ PS+FP+D+ELHFEIEMIDF+K  +++DD GV+KKVI+EGQGWE+PR PYEVK
Sbjct: 121 EADCPVSPPSSFPRDDELHFEIEMIDFSK--VVSDDLGVIKKVIDEGQGWESPREPYEVK 178

Query: 177 AWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPS 236
           AWISAKTGD K+ILS ++GEPYFFT GKSEVPKGLEMGIGTMTREEKAVIYVT+QYLT S
Sbjct: 179 AWISAKTGDDKVILSPKQGEPYFFTIGKSEVPKGLEMGIGTMTREEKAVIYVTNQYLTES 238

Query: 237 PLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHY 296
           PLM VV G EEV FEVEL+H  QVRDMLGDGRLIKRR+RDGKGEFPMDCPL DSLL VHY
Sbjct: 239 PLMSVV-GLEEVQFEVELIHFTQVRDMLGDGRLIKRRLRDGKGEFPMDCPLQDSLLRVHY 297

Query: 297 KGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY 356
           KGMLLNEEK V  DTR+DNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE+ALVTCPPDYAY
Sbjct: 298 KGMLLNEEKTVVIDTRIDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEVALVTCPPDYAY 357

Query: 357 DKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFEL 416
           DKF RPANVPEGAHI+WEIELLGFE PKDWTGL F G+MDEAEKIR TGNRLFKEGKFEL
Sbjct: 358 DKFTRPANVPEGAHIEWEIELLGFEMPKDWTGLDFQGVMDEAEKIRTTGNRLFKEGKFEL 417

Query: 417 AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476
           AKAKYEKVLR+FNHVNPQDDEEGKVF+  RNLL+LNVAAC LKLGECRKSIE CNKVL+A
Sbjct: 418 AKAKYEKVLREFNHVNPQDDEEGKVFLNTRNLLNLNVAACHLKLGECRKSIETCNKVLEA 477

Query: 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL---------KK 527
           NPAHVK LYRRGMAYM +G+FEEA+ DFEMM+KVDKSSE DATAAL KL         KK
Sbjct: 478 NPAHVKALYRRGMAYMEVGDFEEARSDFEMMLKVDKSSELDATAALKKLKQKQQQDVEKK 537

Query: 528 QRRKLK 533
            RR+ K
Sbjct: 538 ARRQFK 543

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282321|dbj|BAJ34026.1| unnamed protein product [Thellungiella halophila]

 Score =  875 bits (2260), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/551 (75%), Positives = 476/551 (86%), Gaps = 1/551 (0%)

Query: 1   MAVEDEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL 60
           M   +++  P+KKK+ +ED+KRR KIVPGSL+KAV+RPGGG+S+P DGDQV YHCTVRTL
Sbjct: 1   MDATEQNYLPKKKKSETEDEKRRKKIVPGSLLKAVVRPGGGESSPVDGDQVVYHCTVRTL 60

Query: 61  DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDC 120
           DGV+VESTRSE GG+G+PIR VLGKSK++LGLLEGIPTM KGE++MFKMKP+MHY E DC
Sbjct: 61  DGVVVESTRSECGGRGVPIRDVLGKSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAEKDC 120

Query: 121 PVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWIS 180
           PV+A   FPKD+ELHFEIE++DFAKAKI +DD GVVKK++ EG+GWE+PR PYEVKA IS
Sbjct: 121 PVSAQVNFPKDDELHFEIELLDFAKAKIASDDLGVVKKILIEGEGWESPREPYEVKARIS 180

Query: 181 AKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP 240
           AK+GDG++I SH E EPYFFTFGKSEVPKGLE+GIGTM R+EKAVIYV  QYLT SPLM 
Sbjct: 181 AKSGDGQVIFSHTE-EPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRKQYLTESPLMH 239

Query: 241 VVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGML 300
           +V+  EEVHFEVELVH IQVRDMLGDGRLIKRRIRDG+GEFPMDCPL DS L VHYKGML
Sbjct: 240 IVQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYKGML 299

Query: 301 LNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFL 360
           LNEEK VFYD+R+DN+ QPLEFSSGEGLVPEGFEMC RLMLPGE+ALV+CPPDYAYDKF 
Sbjct: 300 LNEEKTVFYDSRIDNNDQPLEFSSGEGLVPEGFEMCTRLMLPGELALVSCPPDYAYDKFP 359

Query: 361 RPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAK 420
           RP  VPEGAHIQWEIELLGFE P+DWTGL+F  IM+EAE IR TGNRLFKEGKFELAKAK
Sbjct: 360 RPPGVPEGAHIQWEIELLGFETPRDWTGLNFQSIMNEAENIRSTGNRLFKEGKFELAKAK 419

Query: 421 YEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480
           YEKVLR+FNHVNPQDDEEGKVF   RN+LHLNVAACLLK GE RKS+E CNKVL+A P H
Sbjct: 420 YEKVLREFNHVNPQDDEEGKVFGDARNMLHLNVAACLLKTGEWRKSVETCNKVLEAKPGH 479

Query: 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSL 540
           VKGLYRRGMAYMA  E+E+A+ DF MM+KVDKSSE DATAAL KLK++ ++ + +     
Sbjct: 480 VKGLYRRGMAYMAGAEYEDARNDFNMMIKVDKSSESDATAALLKLKQKEQEAESKARKQF 539

Query: 541 KGCLTRSLGKF 551
           KG   +  G+ 
Sbjct: 540 KGLFDKKPGEI 550

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3080740|gb|AAC39445.1| pasticcino 1-D [Arabidopsis thaliana]

 Score =  874 bits (2257), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/554 (75%), Positives = 480/554 (86%), Gaps = 4/554 (0%)

Query: 1   MAVEDE---DINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTV 57
           MAV D+   +  P+KKK+ +EDDKRR KIVPGSL+KAV+RPGGGDS+P DGDQV YHCTV
Sbjct: 1   MAVGDQTEQNYLPKKKKSETEDDKRRKKIVPGSLLKAVVRPGGGDSSPVDGDQVIYHCTV 60

Query: 58  RTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGE 117
           RTLDGV+VESTRSE GG+G+PIR VLGKSK++LGLLEGIPTM KGE++MFKMKP+MHY E
Sbjct: 61  RTLDGVVVESTRSESGGRGVPIRDVLGKSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAE 120

Query: 118 DDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKA 177
            DCPV+AP  FPKD+ELHFEIE++DF+KAKI +DD GV+KK++NEG+GWE+PR PYEVKA
Sbjct: 121 IDCPVSAPENFPKDDELHFEIELLDFSKAKIASDDLGVIKKILNEGEGWESPREPYEVKA 180

Query: 178 WISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSP 237
            ISAK+GDG +I SH E EPYFFTFGKSEVPKGLE+GIGTM R+EKAVIYV  QYLT SP
Sbjct: 181 RISAKSGDGHVIFSHTE-EPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRKQYLTESP 239

Query: 238 LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYK 297
           L+ + +  EEVHFEVELVH IQVRDMLGDGRLIKRRIRDG+GEFPMDCPL DS L VHYK
Sbjct: 240 LLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYK 299

Query: 298 GMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYD 357
           GMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEGFEMC RLMLPGEIALVTCPPDYAYD
Sbjct: 300 GMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYD 359

Query: 358 KFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELA 417
           KF RP  V EGAH+QWEIELLGFE P+DWTGL+F  IMDEA+KIR TGNRLFKEGKFELA
Sbjct: 360 KFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQSIMDEADKIRSTGNRLFKEGKFELA 419

Query: 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477
           KAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLNVAACLLK+GE RKSIE CNKVL+A 
Sbjct: 420 KAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAK 479

Query: 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLE 537
           P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDKSSE DATAAL KLK++ ++ + +  
Sbjct: 480 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKEQEAESKAR 539

Query: 538 NSLKGCLTRSLGKF 551
              KG   +  G+ 
Sbjct: 540 KQFKGLFDKRPGEI 553

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460353|ref|XP_004147910.1| PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1-like [Cucumis sativus] gi|449519521|ref|XP_004166783.1| PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1-like [Cucumis sativus]

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/519 (79%), Positives = 462/519 (89%), Gaps = 1/519 (0%)

Query: 32  MKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLG 91
           MKAVMRPGGG++TPS+GDQV YHCT+RTLDG +V+STRSE+GGKGIP RHVLGKSK++LG
Sbjct: 1   MKAVMRPGGGEATPSEGDQVVYHCTIRTLDGFVVQSTRSEFGGKGIPTRHVLGKSKMILG 60

Query: 92  LLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIAD 151
           LLEGIPTMLKGEV+MFKMKPQMHYGE+DCPV+  S+FPK +ELHFEIEMIDF KAK++ +
Sbjct: 61  LLEGIPTMLKGEVAMFKMKPQMHYGEEDCPVSVSSSFPKGDELHFEIEMIDFFKAKVVCN 120

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGL 211
           DFGVVKKVI+EGQGWE+PR PYE+KAWISA+TGDGK+ILSH  GEPYFFTFGKSEVPKGL
Sbjct: 121 DFGVVKKVISEGQGWESPREPYEIKAWISARTGDGKVILSHATGEPYFFTFGKSEVPKGL 180

Query: 212 EMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIK 271
           EMGIGTMTR EKAVI+VTSQYLTPSPL+ V +G EEV FEVELVH IQVRDMLGDGRLIK
Sbjct: 181 EMGIGTMTRGEKAVIFVTSQYLTPSPLITVEDGVEEVQFEVELVHFIQVRDMLGDGRLIK 240

Query: 272 RRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPE 331
           RRI DGKG+FPMDCPLHDSLL VHYK ML+ E+KK FYDT+VDNDGQPLEF SGEGLVPE
Sbjct: 241 RRIHDGKGDFPMDCPLHDSLLRVHYKAMLV-EDKKAFYDTKVDNDGQPLEFRSGEGLVPE 299

Query: 332 GFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSF 391
           GFEM VRLMLPGEIALVTCPPDYAYDKF RPANVP GAH+QWEIELLGFE PK+W GL F
Sbjct: 300 GFEMSVRLMLPGEIALVTCPPDYAYDKFPRPANVPAGAHVQWEIELLGFEMPKEWDGLDF 359

Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHL 451
             IMDEAEKIR TGNRLFKEGKFELAKAKYEKVLR+FNHVNPQDDEEGKVF   RN+L+L
Sbjct: 360 KSIMDEAEKIRNTGNRLFKEGKFELAKAKYEKVLREFNHVNPQDDEEGKVFSNTRNMLNL 419

Query: 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
           NVAAC LKLGECRKSIE CNKV++ANPA+ K LYRRGMAYM LG+FEEA+ DFEMM K D
Sbjct: 420 NVAACYLKLGECRKSIETCNKVIEANPANAKALYRRGMAYMTLGDFEEARNDFEMMKKAD 479

Query: 512 KSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSLGK 550
           KSSE DATAAL KLK++ ++++ +     KG   +  G+
Sbjct: 480 KSSETDATAALLKLKQKEQEVEKKARKQFKGLFDKKPGE 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409970|ref|NP_566993.1| peptidyl-prolyl isomerase PASTICCINO1 [Arabidopsis thaliana] gi|73921623|sp|Q7DMA9.2|PAS1_ARATH RecName: Full=Peptidyl-prolyl cis-trans isomerase PASTICCINO1; AltName: Full=70 kDa peptidyl-prolyl isomerase; AltName: Full=FK506-binding protein 72; Short=AtFKBP72; AltName: Full=Immunophilin FKBP72; AltName: Full=Peptidyl-prolyl cis-trans isomerase FKBP72; Short=PPIase FKBP72; AltName: Full=Rotamase gi|15810453|gb|AAL07114.1| putative pasticcino 1 protein [Arabidopsis thaliana] gi|20465605|gb|AAM20285.1| putative pasticcino 1 protein [Arabidopsis thaliana] gi|332645653|gb|AEE79174.1| peptidyl-prolyl isomerase PASTICCINO1 [Arabidopsis thaliana]

 Score =  872 bits (2253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/554 (74%), Positives = 479/554 (86%), Gaps = 4/554 (0%)

Query: 1   MAVEDE---DINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTV 57
           MAV D+   +  P+KKK+ +EDDKRR KIVPGSL+KAV+RPGGGDS+P DGDQV YHCTV
Sbjct: 1   MAVGDQTEQNYLPKKKKSETEDDKRRKKIVPGSLLKAVVRPGGGDSSPVDGDQVIYHCTV 60

Query: 58  RTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGE 117
           RTLDGV+VESTRSE GG+G+PIR VLG SK++LGLLEGIPTM KGE++MFKMKP+MHY E
Sbjct: 61  RTLDGVVVESTRSESGGRGVPIRDVLGNSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAE 120

Query: 118 DDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKA 177
            DCPV+AP  FPKD+ELHFEIE++DF+KAKI +DD GV+KK++NEG+GWE+PR PYEVKA
Sbjct: 121 IDCPVSAPENFPKDDELHFEIELLDFSKAKIASDDLGVIKKILNEGEGWESPREPYEVKA 180

Query: 178 WISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSP 237
            ISAK+GDG +I SH E EPYFFTFGKSEVPKGLE+GIGTM R+EKAVIYV  QYLT SP
Sbjct: 181 RISAKSGDGHVIFSHTE-EPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRKQYLTESP 239

Query: 238 LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYK 297
           L+ + +  EEVHFEVELVH IQVRDMLGDGRLIKRRIRDG+GEFPMDCPL DS L VHYK
Sbjct: 240 LLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYK 299

Query: 298 GMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYD 357
           GMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEGFEMC RLMLPGEIALVTCPPDYAYD
Sbjct: 300 GMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYD 359

Query: 358 KFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELA 417
           KF RP  V EGAH+QWEIELLGFE P+DWTGL+F  IMDEA+KIR TGNRLFKEGKFELA
Sbjct: 360 KFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQSIMDEADKIRSTGNRLFKEGKFELA 419

Query: 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477
           KAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLNVAACLLK+GE RKSIE CNKVL+A 
Sbjct: 420 KAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAK 479

Query: 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLE 537
           P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDKSSE DATAAL KLK++ ++ + +  
Sbjct: 480 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKEQEAESKAR 539

Query: 538 NSLKGCLTRSLGKF 551
              KG   +  G+ 
Sbjct: 540 KQFKGLFDKRPGEI 553

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7630021|emb|CAB88363.1| pasticcino 1 [Arabidopsis thaliana]

 Score =  867 bits (2239), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/554 (74%), Positives = 479/554 (86%), Gaps = 5/554 (0%)

Query: 1   MAVEDE---DINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTV 57
           MAV D+   +  P+KKK+ +EDDKR+ KIVPGSL+KAV+RPGGGDS+P DGDQV YHCTV
Sbjct: 1   MAVGDQTEQNYLPKKKKSETEDDKRK-KIVPGSLLKAVVRPGGGDSSPVDGDQVIYHCTV 59

Query: 58  RTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGE 117
           RTLDGV+VESTRSE GG+G+PIR VLG SK++LGLLEGIPTM KGE++MFKMKP+MHY E
Sbjct: 60  RTLDGVVVESTRSESGGRGVPIRDVLGNSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAE 119

Query: 118 DDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKA 177
            DCPV+AP  FPKD+ELHFEIE++DF+KAKI +DD GV+KK++NEG+GWE+PR PYEVKA
Sbjct: 120 IDCPVSAPENFPKDDELHFEIELLDFSKAKIASDDLGVIKKILNEGEGWESPREPYEVKA 179

Query: 178 WISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSP 237
            ISAK+GDG +I SH E EPYFFTFGKSEVPKGLE+GIGTM R+EKAVIYV  QYLT SP
Sbjct: 180 RISAKSGDGHVIFSHTE-EPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRKQYLTESP 238

Query: 238 LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYK 297
           L+ + +  EEVHFEVELVH IQVRDMLGDGRLIKRRIRDG+GEFPMDCPL DS L VHYK
Sbjct: 239 LLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYK 298

Query: 298 GMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYD 357
           GMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEGFEMC RLMLPGEIALVTCPPDYAYD
Sbjct: 299 GMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYD 358

Query: 358 KFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELA 417
           KF RP  V EGAH+QWEIELLGFE P+DWTGL+F  IMDEA+KIR TGNRLFKEGKFELA
Sbjct: 359 KFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQSIMDEADKIRSTGNRLFKEGKFELA 418

Query: 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477
           KAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLNVAACLLK+GE RKSIE CNKVL+A 
Sbjct: 419 KAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAK 478

Query: 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLE 537
           P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDKSSE DATAAL KLK++ ++ + +  
Sbjct: 479 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKEQEAESKAR 538

Query: 538 NSLKGCLTRSLGKF 551
              KG   +  G+ 
Sbjct: 539 KQFKGLFDKRPGEI 552

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357112059|ref|XP_003557827.1| PREDICTED: peptidyl-prolyl isomerase PASTICCINO1-like [Brachypodium distachyon]

 Score =  824 bits (2128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/544 (71%), Positives = 462/544 (84%), Gaps = 3/544 (0%)

Query: 10  PQKKKAPSED--DKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVES 67
           P+KKK+P+E+  +KRR K+ PGSLMKAV+R G GD TP+DG QV  HCT RT+DG++V S
Sbjct: 13  PEKKKSPAEEAAEKRREKLTPGSLMKAVIRSGSGDLTPADGHQVVLHCTTRTMDGIVVNS 72

Query: 68  TRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPST 127
           TR E+GGKGIP+R VLGKSK++LG  EG PTMLKGE++MFKM+PQ+HY EDDCPV AP+ 
Sbjct: 73  TRREHGGKGIPLRFVLGKSKMILGFAEGFPTMLKGEIAMFKMEPQIHYAEDDCPVTAPNG 132

Query: 128 FPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGK 187
           FPKD EL FEIEM+DF KAK++A+D GVVKK++ EG+GWETPR PYEV A I+A+TGDGK
Sbjct: 133 FPKDAELQFEIEMLDFFKAKVVAEDLGVVKKIVEEGKGWETPREPYEVTARITARTGDGK 192

Query: 188 LILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE 247
            IL H +  PYFFT GKSEVPKGLEMGIGTM R+EKA IYV+  YLT S LMP VEG EE
Sbjct: 193 EIL-HSKEVPYFFTLGKSEVPKGLEMGIGTMVRKEKATIYVSCTYLTESSLMPQVEGLEE 251

Query: 248 VHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKV 307
           VHFEVELV  IQVRDMLGDGRLIKRR+ DG+GEFPMDCPLHDSLL VHYKGMLL+E K V
Sbjct: 252 VHFEVELVQFIQVRDMLGDGRLIKRRVVDGRGEFPMDCPLHDSLLRVHYKGMLLDEPKSV 311

Query: 308 FYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPE 367
           FYDT++DNDG+PLEF SGEGLVPEGFEMCVRLMLPGE ++VTCPPD+AYDKF RPANVPE
Sbjct: 312 FYDTQIDNDGEPLEFCSGEGLVPEGFEMCVRLMLPGEKSVVTCPPDFAYDKFPRPANVPE 371

Query: 368 GAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427
           GAH++WEIELLGFE PKDWTGL+F  IM+EA+KI+ TGNRLFKEGKFELAKAKYEK+LR+
Sbjct: 372 GAHVRWEIELLGFEVPKDWTGLTFKEIMEEADKIKNTGNRLFKEGKFELAKAKYEKLLRE 431

Query: 428 FNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 487
           +NHV+PQDDEEGK+F   R+ LHLNVAAC  K+GE RKSIEACNKV+D+NP HVK LYRR
Sbjct: 432 YNHVHPQDDEEGKIFANSRSSLHLNVAACYQKMGEYRKSIEACNKVVDSNPVHVKALYRR 491

Query: 488 GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRS 547
           GM+YM  G+F++A++DFE M+ VDKSSEPDATAAL KLK++ ++++ +     KG   + 
Sbjct: 492 GMSYMLGGDFDDAKKDFEKMVTVDKSSEPDATAALLKLKQKEQEIEKKARKQFKGLFDKK 551

Query: 548 LGKF 551
            G+ 
Sbjct: 552 PGEI 555

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	553
TAIR|locus:2084435	635	PAS1 "AT3G54010" [Arabidopsis	0.992	0.864	0.708	2.9e-213
UNIPROTKB|Q10KX6	632	Os03g0367000 "Peptidylprolyl i	0.974	0.852	0.680	1.6e-205
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.793	0.750	0.320	5.8e-50
UNIPROTKB|Q6K5Q1	682	P0579G08.8 "Putative peptidylp	0.802	0.651	0.302	7.4e-50
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.896	0.858	0.282	5.2e-49
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.857	0.843	0.278	1.4e-48
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.802	0.765	0.305	4.7e-48
UNIPROTKB|Q95L05	457	FKBP5 "Peptidyl-prolyl cis-tra	0.632	0.765	0.281	2.9e-31
UNIPROTKB|F1NIM4	442	FKBP4 "Uncharacterized protein	0.629	0.787	0.291	3.8e-31
UNIPROTKB|F1NP08	464	FKBP4 "Uncharacterized protein	0.629	0.75	0.291	3.8e-31

TAIR|locus:2084435 PAS1 "AT3G54010" [Arabidopsis thaliana (taxid:3702)]

 Score = 2061 (730.6 bits), Expect = 2.9e-213, P = 2.9e-213
 Identities = 392/553 (70%), Positives = 449/553 (81%)

Query:     1 MAVEDE-DIN--PQKKKAPSEDDKRRMKIVPGSLMKAVMRXXXXXXXXXXXXQVAYHCTV 57
             MAV D+ + N  P+KKK+ +EDDKRR KIVPGSL+KAV+R            QV YHCTV
Sbjct:     1 MAVGDQTEQNYLPKKKKSETEDDKRRKKIVPGSLLKAVVRPGGGDSSPVDGDQVIYHCTV 60

Query:    58 RTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGE 117
             RTLDGV+VESTRSE GG+G+PIR VLG SK++LGLLEGIPTM KGE++MFKMKP+MHY E
Sbjct:    61 RTLDGVVVESTRSESGGRGVPIRDVLGNSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAE 120

Query:   118 DDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKA 177
              DCPV+AP  FPKD+ELHFEIE++DF+KAKI +DD GV+KK++NEG+GWE+PR PYEVKA
Sbjct:   121 IDCPVSAPENFPKDDELHFEIELLDFSKAKIASDDLGVIKKILNEGEGWESPREPYEVKA 180

Query:   178 WISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSP 237
              ISAK+GDG +I SH E EPYFFTFGKSEVPKGLE+GIGTM R+EKAVIYV  QYLT SP
Sbjct:   181 RISAKSGDGHVIFSHTE-EPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRKQYLTESP 239

Query:   238 LMPVVEGCXXXXXXXXXXXXIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYK 297
             L+ + +              IQVRDMLGDGRLIKRRIRDG+GEFPMDCPL DS L VHYK
Sbjct:   240 LLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYK 299

Query:   298 GMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYD 357
             GMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEGFEMC RLMLPGEIALVTCPPDYAYD
Sbjct:   300 GMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYD 359

Query:   358 KFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELA 417
             KF RP  V EGAH+QWEIELLGFE P+DWTGL+F  IMDEA+KIR TGNRLFKEGKFELA
Sbjct:   360 KFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQSIMDEADKIRSTGNRLFKEGKFELA 419

Query:   418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477
             KAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLNVAACLLK+GE RKSIE CNKVL+A 
Sbjct:   420 KAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAK 479

Query:   478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSXXXXXXXXXXXXXE 537
             P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDKSSE DATAAL               
Sbjct:   480 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKEQEAESKAR 539

Query:   538 NSLKGCLTRSLGK 550
                KG   +  G+
Sbjct:   540 KQFKGLFDKRPGE 552

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006457 "protein folding" evidence=IEA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0042761 "very long-chain fatty acid biosynthetic process" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0009735 "response to cytokinin stimulus" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0030154 "cell differentiation" evidence=IMP

GO:0048364 "root development" evidence=IMP

UNIPROTKB|Q10KX6 Os03g0367000 "Peptidylprolyl isomerase PASTICCINO1, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1988 (704.9 bits), Expect = 1.6e-205, P = 1.6e-205
 Identities = 369/542 (68%), Positives = 434/542 (80%)

Query:    11 QKKKAPSEDD--KRRMKIVPGSLMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVEST 68
             +KKK+P+E++  KRR K+ PGSLMK ++R            QV  HCT RT+DG+IV ST
Sbjct:    17 KKKKSPTEEEAEKRRKKLTPGSLMKGLIRSGGGDATPAEGDQVIVHCTTRTIDGIIVNST 76

Query:    69 RSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTF 128
             R E+GGKG+P+R VLGKSK++LG  EG PTML GE++MFKMKPQ+HY E+DCPV AP  F
Sbjct:    77 RREHGGKGVPLRFVLGKSKMILGFAEGFPTMLMGEIAMFKMKPQIHYAEEDCPVTAPDGF 136

Query:   129 PKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKL 188
             PKD+EL FEIEM+DF KAKI+A+D GVVKK+I+EG+GWETPR PYEV A I+A+TGDGK 
Sbjct:   137 PKDDELQFEIEMLDFFKAKIVAEDLGVVKKIIDEGKGWETPREPYEVTARITARTGDGKE 196

Query:   189 ILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCXXX 248
             +L  +E EPYFFT GKSEVPKGLEMGIG+M REEKA+IYVTS YLT S L+P +EG    
Sbjct:   197 LLPSKE-EPYFFTIGKSEVPKGLEMGIGSMAREEKAIIYVTSAYLTNSSLIPQLEGIEEV 255

Query:   249 XXXXXXXXXIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVF 308
                      +QVRDMLGDGRLIKRR+ DGKGEFPMDCPLHDSLL VHYKGMLL+E K +F
Sbjct:   256 QFEVELVQFVQVRDMLGDGRLIKRRVVDGKGEFPMDCPLHDSLLRVHYKGMLLDEPKSIF 315

Query:   309 YDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEG 368
             YDTRVDN G+PLEF SGEGLVPEGFEMCVRLMLPGE ++VTCPPD+AYDKF RPANVPEG
Sbjct:   316 YDTRVDNHGEPLEFCSGEGLVPEGFEMCVRLMLPGEKSIVTCPPDFAYDKFPRPANVPEG 375

Query:   369 AHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDF 428
             AH+QWEIELLGFE PKDWTG +F  IMD+AEKI+ TGNRLFKEGKFELAKAKYEKVLR++
Sbjct:   376 AHVQWEIELLGFEMPKDWTGFTFQEIMDDAEKIKTTGNRLFKEGKFELAKAKYEKVLREY 435

Query:   429 NHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRG 488
             NHV+PQDD+EGK+F   R+ LHLNVAAC  K+GE RKSI+ CNKVL+ANP HVK LYRRG
Sbjct:   436 NHVHPQDDDEGKIFANSRSSLHLNVAACYQKMGEYRKSIDTCNKVLEANPVHVKALYRRG 495

Query:   489 MAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSXXXXXXXXXXXXXENSLKGCLTRSL 548
             M+YM LG+F++A++DFE M+ VDKSSEPDATAAL+                 KG   +  
Sbjct:   496 MSYMLLGDFDDAKKDFEKMIAVDKSSEPDATAALNKLKQTIQETEKKARKQFKGLFDKKP 555

Query:   549 GK 550
             G+
Sbjct:   556 GE 557

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 153/478 (32%), Positives = 236/478 (49%)

Query:    50 QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
             +V  H T   LDG   +S+R     +G P +  LG+ +++ G  EGI TM KGE ++F +
Sbjct:    70 EVQVHYTGTLLDGTKFDSSRD----RGTPFKFSLGQGEVIKGWDEGIKTMKKGEQAVFTV 125

Query:   110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
              P++ YGE      +P   P +  L F++E++ +A  K I  D G+ KKV+ EG  WE P
Sbjct:   126 PPELAYGE----AGSPPAIPPNATLRFDVELLSWASVKDICKDGGIFKKVLAEGHKWENP 181

Query:   170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
             +   EV     A+  DG ++ S  +G  +    G    P  L   + TM + EK ++ V 
Sbjct:   182 KDLDEVLVKYEARLEDGTVV-SKSDGVEFAVKDGYF-CP-ALSKAVKTMKKGEKVLLTVK 238

Query:   230 SQYLTPSPLMPVVEGCXXXXXXXXXXXXIQVRD-----MLGDG-RLIKRRIRDGKG-EFP 282
              QY       P                 +++       ++GD  R++K+ +++G+G E P
Sbjct:   239 PQYGFGEQGKPASGAEAAVPPNATLYVDLELLSWKTVTLIGDDKRILKKVLKEGEGYERP 298

Query:   283 MDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLP 342
              D     +++ V + G L  E+  VF     D D +P EF + E  V EG +  V  M  
Sbjct:   299 ND----GAVVRVRFIGKL--EDGTVFSKKGHDGD-EPFEFRTDEEQVIEGLDRTVVTMKK 351

Query:   343 GEIALVTCPPDYAYDKFLRP---ANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAE 399
             GE+ALV  PP +A+         A VP  + + +E+EL+ FEK K+    S+D + D AE
Sbjct:   352 GEVALVRLPPQHAFGSTETKQDLAVVPANSTVWYEVELVSFEKEKE----SWD-LKDNAE 406

Query:   400 KIRVT------GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNV 453
             KI         GN  FK GK+  A  +YEK  +   + +   D+E K     +    LN 
Sbjct:   407 KIEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDEKKQSKALKVSCKLNN 466

Query:   454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
             AAC LKL E R++ + C KVL+    +VK LYRR  AY+ L + E A+ D +  +++D
Sbjct:   467 AACKLKLKEYREAEKLCTKVLELESTNVKALYRRTQAYIELADLELAELDVKKALEID 524

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 143/473 (30%), Positives = 233/473 (49%)

Query:    50 QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
             +V  H T   LDG   +S+R     +  P +  LG+ +++ G   GI TM KGE ++F +
Sbjct:   115 EVQVHYTGTLLDGTKFDSSRD----RDAPFKFTLGQGQVIKGWDLGIKTMKKGENAIFTI 170

Query:   110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
              P++ YGED     +P   P +  L F++E+I +   K I  D G++KKV+ EG  WE P
Sbjct:   171 PPELAYGED----GSPPVIPPNATLQFDVELISWESVKDICKDGGILKKVLAEGTKWENP 226

Query:   170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
             R   EV      +  DG ++    E +   FT         +   + TM + EKA++ V 
Sbjct:   227 RDRDEVFVKYEVRLEDGTVVA---ESDGVEFTVKDGHFCPAISKAVKTMKKNEKALLTVK 283

Query:   230 SQYLTPSPLMPVVEGCXXXXXXXXXXXXIQ------VRDMLGDGRLIKRRIRDGKG-EFP 282
              QY       P                 ++      V ++  D +++K+ + +G+G E P
Sbjct:   284 PQYGFGEQGRPAARDEAAIPPNATLHINLELVSWKAVTEIGNDKKILKKILHEGEGYERP 343

Query:   283 MDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLP 342
              DC    +L+ V   G L  E+  +F     D D +P EF + E  V EG +  V  M  
Sbjct:   344 SDC----TLVRVKLIGKL--EDGTIFVTRGHDGD-EPFEFKTDEDQVVEGLDKAVLSMKK 396

Query:   343 GEIALVTCPPDYAY--DKFLRPANV-PEGAHIQWEIELLGFEKPKD-WTGLSFDGIMDEA 398
             GE+ALVT PP+YA+  D+  +  +V P  + + +E+EL+ F+K K+ W        ++ A
Sbjct:   397 GEVALVTIPPEYAFGSDETRQDLSVVPPNSTVYYEVELVSFDKEKESWDMKENTEKIEAA 456

Query:   399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL 458
              K +  GN  FK  K+  A  +Y K L    + +   +EE ++    +    LN AAC L
Sbjct:   457 AKKKDEGNAWFKMEKYARASKRYGKALNFIQYDSSFSEEEKQLSKPLKVSCKLNNAACKL 516

Query:   459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
             KL + +++ E C +VL+ +  +VK  YRR  A+M L +F+ A+ D +  +++D
Sbjct:   517 KLKDYKEAKELCTEVLELDSMNVKAFYRRAQAHMYLVDFDLAELDIKKALEID 569

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 148/523 (28%), Positives = 250/523 (47%)

Query:     5 DEDI--NPQKKKAPSEDDKRRMKIVPGSLMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDG 62
             D D+  N +   AP       M+I    L K +++            +V  H T   LDG
Sbjct:    20 DMDLPDNDEADSAPYLKIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDG 79

Query:    63 VIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPV 122
                +S+R     +G P +  LG+  ++ G   GI TM KGE ++F + P++ YGE     
Sbjct:    80 TKFDSSRD----RGTPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGE----T 131

Query:   123 AAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAK 182
              +P T P +  L F++E+I +   K I  D GV KK+I EG+ WE P+   EV     A+
Sbjct:   132 GSPPTIPPNATLQFDVELIAWRSVKDICGDGGVSKKIIVEGEKWEKPKDLDEVYVKYEAR 191

Query:   183 TGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVV 242
               DG ++    +G    FT  +      L   + TM R EK ++ V  QY       P  
Sbjct:   192 LEDGTIV-GKSDGVE--FTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPAS 248

Query:   243 EGCXXXXX-XXXXXXXIQ------VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVH 295
             +G              ++      V ++  D ++IK+ +++G+G    + P   +++ + 
Sbjct:   249 DGLQAAIPPNATLQIDLELVSWKTVVEVTDDRKVIKKILKEGEG---YERPNEGAIVKLK 305

Query:   296 YKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYA 355
               G L  +   VF     + D +P EF   E  V EG E  V  M  GE+AL+T  P+YA
Sbjct:   306 LIGKL-QDGTTVFVKKGHEEDEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYA 364

Query:   356 Y---DKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEG 412
             +   +     A +P  + + +E+EL+ F K K+   ++    ++ A K +  GN LFK G
Sbjct:   365 FGSSESKQELAVIPPNSTVYYEVELVSFIKEKESWDMNTQERIEAAGKKKEEGNVLFKAG 424

Query:   413 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472
             K+  A  +YE+ ++   + +  D+EE K     +   +LN AAC LKL + +++ +   K
Sbjct:   425 KYARASKRYERGVKYIEYDSTFDEEEKKKSKDLKIACNLNDAACKLKLKDYKEAAKLSTK 484

Query:   473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
             VL+ +  +VK +YRR  AY+   + + A+ D +  +++D  ++
Sbjct:   485 VLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNK 527

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 139/499 (27%), Positives = 239/499 (47%)

Query:    25 KIVPGSLMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLG 84
             K +   L K +++            +V  H T   LDG   +S+R     +  P +  LG
Sbjct:    34 KEIQQGLKKKLLKEGEGYETPENGDEVEVHYTGTLLDGTKFDSSRD----RATPFKFTLG 89

Query:    85 KSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144
             + +++ G   GI TM KGE ++F +  ++ YGE      +P T P +  L F++E++ + 
Sbjct:    90 QGQVIKGWDIGIKTMKKGENAVFTIPAELAYGES----GSPPTIPANATLQFDVELLKWD 145

Query:   145 KAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGK 204
               K I  D GV KK++  G+ WE P+   EV     AK  DG ++    +G    FT   
Sbjct:   146 SVKDICKDGGVFKKILAVGEKWENPKDLDEVLVKFEAKLEDGTVV-GKSDGVE--FTVKD 202

Query:   205 SEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCXXXXXXXXXXXXIQ----- 259
                   L   + TM + EK ++ V  QY       P   G             ++     
Sbjct:   203 GHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWK 262

Query:   260 -VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQ 318
              V ++  D +++K+ +++G G    + P   +++ V   G L  ++  VF       + +
Sbjct:   263 TVSEVTDDNKVVKKVLKEGDG---YERPNEGAVVKVKLIGKL--QDGTVFLKKGHGENEE 317

Query:   319 PLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY---DKFLRPANVPEGAHIQWEI 375
             P EF + E  V +G +  V  M  GE+ALVT  P+YA+   +     A VP  + + +E+
Sbjct:   318 PFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEV 377

Query:   376 ELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD 435
             +LL F+K ++   ++ +  ++ A K +  GN  FK GK+ LA  +YEK ++   +     
Sbjct:   378 DLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFS 437

Query:   436 DEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG 495
             +EE K     +   +LN AAC LKL + +++ + C KVL+    +VK LYRR  AYM L 
Sbjct:   438 EEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELS 497

Query:   496 EFEEAQRDFEMMMKVDKSS 514
             + + A+ D +  +++D ++
Sbjct:   498 DLDLAEFDVKKALEIDPNN 516

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 144/472 (30%), Positives = 232/472 (49%)

Query:    50 QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
             +V  H T   LDG   +S+R     +G P +  LG+ +++ G   GI TM KGE ++F +
Sbjct:    66 EVEVHYTGTLLDGKKFDSSRD----RGTPFKFKLGQGQVIKGWDLGIKTMKKGENAVFTI 121

Query:   110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
              P + YGE      +P T P    L F++E++ +   K I  D G+ KK++ EG+ WE P
Sbjct:   122 PPDLAYGES----GSPPTIPASATLQFDVELLSWTSVKDICQDGGIFKKILKEGEKWENP 177

Query:   170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
             +   EV     A+  DG +I S  EG    FT         L   + TM + EK ++ V 
Sbjct:   178 KDLDEVFVKYEARLEDGTVI-SKSEGAE--FTVKDGFFCPALAKAVKTMKKAEKVLLTVK 234

Query:   230 SQYLTPSPLMPVV--EGCXXXXXXXXXXXXI----QVRDMLGDGRLIKRRIRDGKGEFPM 283
              QY       P    EG             +     V ++  D +++K+ + +G G    
Sbjct:   235 PQYGFGENGRPAAGEEGAVPPNATLLVNLELVSWKTVTEIGDDKKILKKVLTEGTG---Y 291

Query:   284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDG-QPLEFSSGEGLVPEGFEMCVRLMLP 342
             + P   +++ V   G L  ++  +F  T+  +D  +P EF + E  V +G +  V  M  
Sbjct:   292 ERPNEGAVVKVKITGKL--QDGTIF--TKKGHDEPEPFEFKTDEEEVIDGIDRAVLNMKN 347

Query:   343 GEIALVTCPPDYAYDKFLRP---ANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAE 399
             GE+ALVT PP+YA+         A VP  + + +E+EL+ F K K+   L+    ++ A 
Sbjct:   348 GEVALVTIPPEYAFGSTESKQDLAVVPPNSTVIYEVELVSFVKDKESWDLNNTEKIETAG 407

Query:   400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK 459
               +  GN LFK GK+  A  +YEK  +   + +   ++E K     +   +LN AAC LK
Sbjct:   408 AKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQLKVTCNLNNAACKLK 467

Query:   460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
             L + +++ + C KVL+ +  +VK LYRR  AYM L + E A+ D +  +++D
Sbjct:   468 LKDYKQAEKLCTKVLELDSQNVKALYRRAQAYMQLADLELAEVDIKKALEID 519

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q95L05 FKBP5 "Peptidyl-prolyl cis-trans isomerase FKBP5" [Chlorocebus aethiops (taxid:9534)]

 Score = 345 (126.5 bits), Expect = 2.9e-31, P = 2.9e-31
 Identities = 104/370 (28%), Positives = 173/370 (46%)

Query:   152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
             D GV+K V   G G ETP    +V      K  +GK    SH   EP+ F+ GKS+V K 
Sbjct:    30 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFNSSHDRNEPFVFSLGKSQVIKA 89

Query:   211 LEMGIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCXXXXXXXXXXXXIQVRDMLGDGRL 269
              ++G+ TM + E   +    +Y   S   +P +                +  D+L DG +
Sbjct:    90 WDIGVATMKKGEICHLLCKPEYAYGSAGSVPKIPS-NATLFFEIELLDFKGEDLLEDGGI 148

Query:   270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL- 328
             I+R  R G+G      P   + + +H +G      +++F       D + + F+ GEG  
Sbjct:   149 IRRTKRKGEG---YSNPNEGATVEIHLEGRC---GERMF-------DCRDVAFTVGEGED 195

Query:   329 --VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
               +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct:   196 HDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query:   386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
                +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct:   256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMRAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query:   446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                  LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct:   316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query:   506 MMMKVDKSSE 515
              +++V+  ++
Sbjct:   376 KVLEVNPQNK 385

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

UNIPROTKB|F1NIM4 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 344 (126.2 bits), Expect = 3.8e-31, P = 3.8e-31
 Identities = 109/374 (29%), Positives = 184/374 (49%)

Query:   152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDG-KLILSHREGEPYFFTFGKSEVPKG 210
             D GV+K V  EG G E+P    +V    +    DG K   S    + + F  GK EV K 
Sbjct:    23 DEGVLKVVKREGTGTESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKFSFDLGKGEVIKA 82

Query:   211 LEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLGD- 266
              ++ + TM   E   I    +Y   L  SP  P +                +  D+  D 
Sbjct:    83 WDIAVATMKVGEICQITCKPEYAYGLAGSP--PKIPP-NATLIFEIELFEFKGEDLTDDE 139

Query:   267 -GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
              G +I RRIR  KGE  +  P   +L+ + ++G   +   + F       D + L F  G
Sbjct:   140 DGGII-RRIRK-KGEGYLK-PNEGALVEIQFEGRYRD---RAF-------DKRELRFEIG 186

Query:   326 EGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFE 381
             EG    +P G E  ++ M   E ++    P+Y +    +    +P  A +Q+E++L  FE
Sbjct:   187 EGDNYDLPHGLEKAIQKMEKSEESIFYLKPNYGFGSTGKEKFQIPPDAELQYEVKLKSFE 246

Query:   382 KPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV 441
             K K+   ++ +  ++++  ++  G + FKEGK++ A  +Y+K++    H +   DEE   
Sbjct:   247 KAKESWEMNTEEKLEQSCMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTK 306

Query:   442 FVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ 501
                 R   HLN+A C LKL E  +++E CNK L+ + ++ KGL+RRG A++A+ +FE A+
Sbjct:   307 AKSLRLAAHLNLAMCHLKLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELAR 366

Query:   502 RDFEMMMKVDKSSE 515
              DF+ ++++  S++
Sbjct:   367 GDFQKVIQLYPSNK 380

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1NP08 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 344 (126.2 bits), Expect = 3.8e-31, P = 3.8e-31
 Identities = 109/374 (29%), Positives = 184/374 (49%)

Query:   152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDG-KLILSHREGEPYFFTFGKSEVPKG 210
             D GV+K V  EG G E+P    +V    +    DG K   S    + + F  GK EV K 
Sbjct:    23 DEGVLKVVKREGTGTESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKFSFDLGKGEVIKA 82

Query:   211 LEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLGD- 266
              ++ + TM   E   I    +Y   L  SP  P +                +  D+  D 
Sbjct:    83 WDIAVATMKVGEICQITCKPEYAYGLAGSP--PKIPP-NATLIFEIELFEFKGEDLTDDE 139

Query:   267 -GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
              G +I RRIR  KGE  +  P   +L+ + ++G   +   + F       D + L F  G
Sbjct:   140 DGGII-RRIRK-KGEGYLK-PNEGALVEIQFEGRYRD---RAF-------DKRELRFEIG 186

Query:   326 EGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFE 381
             EG    +P G E  ++ M   E ++    P+Y +    +    +P  A +Q+E++L  FE
Sbjct:   187 EGDNYDLPHGLEKAIQKMEKSEESIFYLKPNYGFGSTGKEKFQIPPDAELQYEVKLKSFE 246

Query:   382 KPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV 441
             K K+   ++ +  ++++  ++  G + FKEGK++ A  +Y+K++    H +   DEE   
Sbjct:   247 KAKESWEMNTEEKLEQSCMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTK 306

Query:   442 FVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ 501
                 R   HLN+A C LKL E  +++E CNK L+ + ++ KGL+RRG A++A+ +FE A+
Sbjct:   307 AKSLRLAAHLNLAMCHLKLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELAR 366

Query:   502 RDFEMMMKVDKSSE 515
              DF+ ++++  S++
Sbjct:   367 GDFQKVIQLYPSNK 380

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7DMA9	PAS1_ARATH	5, ., 2, ., 1, ., 8	0.7490	0.9945	0.8661	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.976
4th Layer	5.2.1.8	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	553
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-17
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	8e-17
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	2e-16
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	8e-08
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	3e-07
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	2e-06
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	5e-06
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	9e-06
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	1e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	6e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.001
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.001
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.002
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	0.002

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 76.6 bits (189), Expect = 4e-17
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 15/109 (13%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  +K G ++ A   YEK L     ++P + +            + N+AA   KLG+  
Sbjct: 7   GNLYYKLGDYDEALEYYEKAL----ELDPDNAD-----------AYYNLAAAYYKLGKYE 51

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513
           +++E   K L+ +P + K  Y  G+AY  LG++EEA   +E  +++D +
Sbjct: 52  EALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 75.4 bits (186), Expect = 8e-17
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 294 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 353
           VHY G L +    VF  ++  + G+P EF+ G G V  G++  +  M  GE   +T PP+
Sbjct: 13  VHYTGKLED--GTVFDSSK--DRGKPFEFTLGSGQVIPGWDEGLLGMKVGEKRKLTIPPE 68

Query: 354 YAY-DKFLRPANVPEGAHIQWEIELL 378
            AY ++ L    +P  A + +E+ELL
Sbjct: 69  LAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 74.2 bits (183), Expect = 2e-16
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 41  GDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML 100
           G      GD V  H T +  DG + +S++        P    LG  +++ G  EG+  M 
Sbjct: 1   GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGK----PFEFTLGSGQVIPGWDEGLLGMK 56

Query: 101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMI 141
            GE     + P++ YGE+     A    P +  L FE+E++
Sbjct: 57  VGEKRKLTIPPELAYGEEG---LAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
           LN+     KLG+  +++E   K L+ +P +    Y    AY  LG++EEA  D+E  +++
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 511 DKSSEPDATAALSKLKKQRRKLK 533
           D  +   A   L     +  K +
Sbjct: 64  DPDN-AKAYYNLGLAYYKLGKYE 85

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE-FEEAQRDFEM 506
               N+   L KLG+  ++IEA  K L+ +P + +  Y   +AY+ LG+ +EEA  D E 
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 507 MMKVDK 512
            +++D 
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 48.8 bits (117), Expect = 8e-08
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 16/84 (19%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D AE ++  GN LFK G ++ A   YEK L     ++P + E            + N+A 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALE----LDPDNAE-----------AYYNLAL 45

Query: 456 CLLKLGECRKS-IEACNKVLDANP 478
             LKLG+  +  +E   K L+ +P
Sbjct: 46  AYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 165 GWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEK 223
           G E  +    V    + K  DG +  S +  G+P+ FT G  +V  G + G+  M   EK
Sbjct: 1   GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 224 AVIYVTSQYLTPS--PLMPVVEGCEEVHFEVELV 255
             + +  +           V+     + FEVEL+
Sbjct: 61  RKLTIPPELAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 10/114 (8%)

Query: 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 326
             L  + ++ G G  P         + VHY G L++    VF D+  D  GQP EF  G 
Sbjct: 101 SGLQYKVLKAGDGAAPKK----GDTVTVHYTGTLID--GTVF-DSSYDR-GQPAEFPLGG 152

Query: 327 GLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
             V  G++  ++ M  G    +T PP+ AY +   P  +P  + + +E+ELL  
Sbjct: 153 --VIPGWDEGLQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDV 204

Length = 205

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 49.2 bits (117), Expect = 5e-06
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 18/143 (12%)

Query: 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 457
           A K++  GN+ ++   F  A   Y K +         + +   V+       + N AAC 
Sbjct: 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAI---------ECKPDPVY-------YSNRAACH 170

Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD 517
             LG+  K +E     L+ +P + K L RR  AY  LG++ +A  D      +D      
Sbjct: 171 NALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ 230

Query: 518 ATAALSK-LKKQ-RRKLKVRLEN 538
           +  A+ + LKK    K K  LE 
Sbjct: 231 SAQAVERLLKKFAESKAKEILET 253

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 13/137 (9%)

Query: 9   NPQKKKAPSEDDKRRMKIV--PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVE 66
           N  + KA  E + +   +   P  L   V++ G G   P  GD V  H T   +DG + +
Sbjct: 79  NAAEGKAFLEKNAKEKGVKTLPSGLQYKVLKAGDGA-APKKGDTVTVHYTGTLIDGTVFD 137

Query: 67  STRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPS 126
           S+      +G P    LG   ++ G  EG+  M  G      + P++ YGE       P 
Sbjct: 138 SSYD----RGQPAEFPLGG--VIPGWDEGLQGMKVGGKRKLTIPPELAYGERG----VPG 187

Query: 127 TFPKDEELHFEIEMIDF 143
             P +  L FE+E++D 
Sbjct: 188 VIPPNSTLVFEVELLDV 204

Length = 205

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
            L+ G+  +++ A    L   P   + L   G A +  G   EA       +  D
Sbjct: 7   ALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Length = 65

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 25/154 (16%)

Query: 410 KEGKFELAKAKYEKVLR-DFNHVN-----------PQDDEEGKVFVGKRNLLH------- 450
           +EG  + A  ++EKVL  D  ++              ++EE   ++ K   L+       
Sbjct: 511 QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA 570

Query: 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
           L +A   L  G+ +K++   N+  DA P   +     G A +A G+  +A   F+ ++ +
Sbjct: 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL 630

Query: 511 DKSSEP------DATAALSKLKKQRRKLKVRLEN 538
              S        DA A +    K    LK  LE 
Sbjct: 631 QPDSALALLLLADAYAVMKNYAKAITSLKRALEL 664

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 449 LHLNVAACLLKLGECRKSIEACNKVL-------DANPAHVKGLYRRGMAYMALGEFEEAQ 501
              N+A  L +LG+  +++E   K L       + +P   + L      Y+ALG+++EA 
Sbjct: 7   ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 502 RDFE 505
              E
Sbjct: 67  EYLE 70

Length = 78

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 41.8 bits (96), Expect = 6e-04
 Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 14/137 (10%)

Query: 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL 448
           L      D A  + +    L K G+ E A    EK L      N                
Sbjct: 50  LELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPN-------------LAE 96

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM-AYMALGEFEEAQRDFEMM 507
             LN+   L  LG+  +++E   K L  +P          + A   LG++EEA   +E  
Sbjct: 97  ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKA 156

Query: 508 MKVDKSSEPDATAALSK 524
           +++D      A A L+ 
Sbjct: 157 LELDPELNELAEALLAL 173

Length = 291

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 36.6 bits (86), Expect = 0.001
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513
            K LY  G AY+ LG+++EA   +E  ++++ +
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 481 VKGLYRRGMAYMALGEFEEAQRDFE 505
            + LY  G+AY  LG++EEA   +E
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYE 25

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 447 NLLHLNVAACLLKLGECRKSI-EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           N +   +A   L  G+ ++ + E   K L  +    + L  RG+AY+ LG+ E AQ+ +E
Sbjct: 90  NQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYE 149

Query: 506 MMMKVDKSSEPDATAALSKLKKQRRKLK 533
             + +D  S   A   L++L     +  
Sbjct: 150 QALAIDPRS-LYAKLGLAQLALAENRFD 176

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502
              K L+ +P + +  Y   +  + LG+++EA +
Sbjct: 1   LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34

Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	553
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	100.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.96
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.96
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.94
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.94
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.93
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.89
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.88
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.88
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.86
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.83
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.83
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.81
KOG0553	304	consensus TPR repeat-containing protein [General f	99.81
KOG4234	271	consensus TPR repeat-containing protein [General f	99.8
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.78
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.78
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.74
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.72
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	99.65
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.65
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.63
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.63
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.63
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.58
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.54
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.53
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.53
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.51
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.51
PRK15359	144	type III secretion system chaperone protein SscB;	99.44
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.44
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.42
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.42
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.38
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.35
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.3
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.28
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.27
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.2
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.15
PRK11189	296	lipoprotein NlpI; Provisional	99.14
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.99
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.98
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.98
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.98
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.96
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.96
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.94
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.91
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.91
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.91
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.91
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.89
KOG4555	175	consensus TPR repeat-containing protein [Function	98.89
KOG1126	638	consensus DNA-binding cell division cycle control	98.89
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.89
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.84
PRK15331	165	chaperone protein SicA; Provisional	98.81
PRK15359	144	type III secretion system chaperone protein SscB;	98.79
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.78
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.77
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.77
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.77
KOG1125	579	consensus TPR repeat-containing protein [General f	98.74
PRK12370	553	invasion protein regulator; Provisional	98.73
PRK12370	553	invasion protein regulator; Provisional	98.73
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.73
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.72
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.72
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.71
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.68
PF13371	73	TPR_9: Tetratricopeptide repeat	98.68
PLN02789	320	farnesyltranstransferase	98.66
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.66
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.66
PRK11189	296	lipoprotein NlpI; Provisional	98.66
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.65
PRK01490	435	tig trigger factor; Provisional	98.64
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.64
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.63
PRK10803	263	tol-pal system protein YbgF; Provisional	98.62
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.61
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.61
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.59
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.58
KOG1310	758	consensus WD40 repeat protein [General function pr	98.56
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.56
KOG1126	638	consensus DNA-binding cell division cycle control	98.56
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.55
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.54
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.53
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.53
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.52
PF13512	142	TPR_18: Tetratricopeptide repeat	98.52
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.52
PLN02789	320	farnesyltranstransferase	98.51
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.51
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.5
KOG0553	304	consensus TPR repeat-containing protein [General f	98.5
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.5
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.48
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.46
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.43
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.43
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.43
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.42
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.41
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.4
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.39
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.38
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.38
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.37
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.36
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.35
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.35
KOG2076	895	consensus RNA polymerase III transcription factor	98.34
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.34
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.32
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.31
PRK01490	435	tig trigger factor; Provisional	98.27
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.27
PF12688	120	TPR_5: Tetratrico peptide repeat	98.25
KOG2003	840	consensus TPR repeat-containing protein [General f	98.23
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.21
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.21
PF13371	73	TPR_9: Tetratricopeptide repeat	98.21
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.2
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	98.2
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.18
KOG1129	478	consensus TPR repeat-containing protein [General f	98.17
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.16
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.15
KOG2076	895	consensus RNA polymerase III transcription factor	98.12
KOG2003	840	consensus TPR repeat-containing protein [General f	98.11
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.11
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.1
PRK14574	822	hmsH outer membrane protein; Provisional	98.09
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.08
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.07
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.06
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.04
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.04
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.99
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.99
PRK14574	822	hmsH outer membrane protein; Provisional	97.98
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.97
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.97
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.96
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.96
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.95
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.94
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.94
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.92
PRK10803	263	tol-pal system protein YbgF; Provisional	97.9
PF13431	34	TPR_17: Tetratricopeptide repeat	97.89
KOG1125	579	consensus TPR repeat-containing protein [General f	97.89
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.85
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.82
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.81
PRK11906	458	transcriptional regulator; Provisional	97.79
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.78
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.76
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.75
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.74
PRK11906	458	transcriptional regulator; Provisional	97.73
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.71
KOG1129	478	consensus TPR repeat-containing protein [General f	97.7
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.68
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.67
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.66
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.65
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.65
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.64
PF13428	44	TPR_14: Tetratricopeptide repeat	97.62
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.61
PF13428	44	TPR_14: Tetratricopeptide repeat	97.6
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.6
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.59
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.57
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.55
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.54
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.53
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.5
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.49
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.47
PF12688	120	TPR_5: Tetratrico peptide repeat	97.47
KOG4555	175	consensus TPR repeat-containing protein [Function	97.41
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.4
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.39
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.38
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.34
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.33
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.33
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.3
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.29
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.27
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.21
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.21
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.21
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.18
PRK10941	269	hypothetical protein; Provisional	97.16
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.15
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.07
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.05
PF13512	142	TPR_18: Tetratricopeptide repeat	97.03
KOG3364	149	consensus Membrane protein involved in organellar	97.03
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.02
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.95
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.95
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.94
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.9
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.9
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.89
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.86
PRK15331	165	chaperone protein SicA; Provisional	96.86
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.84
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.82
KOG1586	288	consensus Protein required for fusion of vesicles	96.8
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.79
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.76
KOG4234	271	consensus TPR repeat-containing protein [General f	96.76
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	96.73
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.72
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.69
PF13431	34	TPR_17: Tetratricopeptide repeat	96.66
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.62
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.59
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.56
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.51
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.43
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.41
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.37
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.19
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.14
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.12
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.11
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.1
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.09
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.06
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.02
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.0
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.98
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.95
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.92
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.91
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.87
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.8
KOG1585	308	consensus Protein required for fusion of vesicles	95.78
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.72
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.69
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	95.5
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.39
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.38
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	95.36
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.3
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.15
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	95.04
PRK04841	903	transcriptional regulator MalT; Provisional	94.95
KOG4340	459	consensus Uncharacterized conserved protein [Funct	94.94
KOG1586	288	consensus Protein required for fusion of vesicles	94.9
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.81
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	94.76
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	94.74
COG2912	269	Uncharacterized conserved protein [Function unknow	94.67
KOG4507	886	consensus Uncharacterized conserved protein, conta	94.62
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.59
PRK04841	903	transcriptional regulator MalT; Provisional	94.58
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	94.58
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.54
KOG2471	696	consensus TPR repeat-containing protein [General f	94.43
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.39
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.34
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.26
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	94.25
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	94.24
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.19
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.06
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.05
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	93.86
COG3947	361	Response regulator containing CheY-like receiver a	93.78
KOG3364	149	consensus Membrane protein involved in organellar	93.38
PLN03218	1060	maturation of RBCL 1; Provisional	93.34
KOG1585	308	consensus Protein required for fusion of vesicles	93.34
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	93.03
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.91
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.88
KOG2471	696	consensus TPR repeat-containing protein [General f	92.8
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.73
PLN03218	1060	maturation of RBCL 1; Provisional	92.72
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	92.57
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.46
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.1
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.04
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	91.98
PLN03077	857	Protein ECB2; Provisional	91.7
PHA02537	230	M terminase endonuclease subunit; Provisional	91.66
KOG2300	629	consensus Uncharacterized conserved protein [Funct	91.4
PF03704	146	BTAD: Bacterial transcriptional activator domain;	91.09
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	91.02
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	90.91
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	90.55
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	90.55
KOG4814	872	consensus Uncharacterized conserved protein [Funct	90.48
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	90.42
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	90.41
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	90.3
KOG2422	665	consensus Uncharacterized conserved protein [Funct	90.06
KOG2610	491	consensus Uncharacterized conserved protein [Funct	90.0
COG4700	251	Uncharacterized protein conserved in bacteria cont	89.93
PRK10941	269	hypothetical protein; Provisional	89.76
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	89.72
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	89.63
COG4976	287	Predicted methyltransferase (contains TPR repeat)	89.53
COG5191	435	Uncharacterized conserved protein, contains HAT (H	89.4
COG3898	531	Uncharacterized membrane-bound protein [Function u	89.04
PLN03077	857	Protein ECB2; Provisional	88.77
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	88.68
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.48
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	88.47
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	88.17
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	88.15
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	88.12
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	88.12
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	87.78
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	87.43
KOG2796	366	consensus Uncharacterized conserved protein [Funct	87.38
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.21
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	86.55
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	86.37
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	86.06
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	86.04
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	85.94
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	85.9
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	85.69
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	85.38
KOG2422	665	consensus Uncharacterized conserved protein [Funct	85.3
cd02656	75	MIT MIT: domain contained within Microtubule Inter	84.72
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	84.38
PF04212	69	MIT: MIT (microtubule interacting and transport) d	84.37
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	84.11
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	84.07
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	83.81
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	83.09
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	82.62
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	81.97
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	81.96
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	81.74
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	80.95
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	80.91
COG3118	304	Thioredoxin domain-containing protein [Posttransla	80.33
KOG1550	552	consensus Extracellular protein SEL-1 and related	80.23
KOG1463	411	consensus 26S proteasome regulatory complex, subun	80.05

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-68  Score=525.05  Aligned_cols=355  Identities=38%  Similarity=0.604  Sum_probs=332.2

Q ss_pred             ecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCC
Q 008788          161 NEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP  240 (553)
Q Consensus       161 ~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~  240 (553)
                      .+|.|+++|..||.|.+||++++.||+.|+||.++.|+.|.+|.++++.||..++.+|+.|+.             ..++
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~g~~-------------~~pp   67 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKKGEA-------------GSPP   67 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCcccccccccccccccccc-------------CCCC
Confidence            379999999999999999999999999999998899999999999999999999999998442             4678


Q ss_pred             CCCCCceEEEEEEEeeeeeeeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCe
Q 008788          241 VVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPL  320 (553)
Q Consensus       241 ~i~~~~~l~~~v~l~~~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~  320 (553)
                      .||++++|.|+|+|+          ||+|+|+|+++|.|+  ..+|..|..|+|||.|++.+  + +|+++.     ..|
T Consensus        68 ~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd--~~~P~~g~~V~v~~~G~~~~--~-~f~~~~-----~~f  127 (397)
T KOG0543|consen   68 KIPSNATLLFEVELL----------DGGIIKRIIREGEGD--YSRPNKGAVVKVHLEGELED--G-VFDQRE-----LRF  127 (397)
T ss_pred             CCCCCcceeeeeccc----------CCceEEeeeecCCCC--CCCCCCCcEEEEEEEEEECC--c-ceeccc-----cce
Confidence            899999999999998          999999999999996  35789999999999999976  4 675443     348


Q ss_pred             EEEeCC-CCchhHHHHHHhcCCCCcEEEEEeCCCCccc-CCCCCCCCCCCCeEEEEEEEeeee-cCCCCCCCChhhHHHH
Q 008788          321 EFSSGE-GLVPEGFEMCVRLMLPGEIALVTCPPDYAYD-KFLRPANVPEGAHIQWEIELLGFE-KPKDWTGLSFDGIMDE  397 (553)
Q Consensus       321 ~f~lG~-~~v~~g~e~~l~~M~~GE~~~~~~~~~~~yg-~~g~~~~ip~~~~l~~~ieL~~~~-~~~~~~~~~~~e~~~~  397 (553)
                      +|.+|+ ..||.||+.||+.|++||++.|+|+|+|+|| ..++++.|||++++.|+|+|+++. .....|.|..++++..
T Consensus       128 e~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~  207 (397)
T KOG0543|consen  128 EFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEA  207 (397)
T ss_pred             EEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHH
Confidence            899998 5899999999999999999999999999999 667888999999999999999999 6666777888889999


Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      |...|++||.+|+.|+|..|...|.+|+++|++..+.++++.++...++..||+|+|+||+|+++|.+|+.+|+++|+++
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~  287 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD  287 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSLG  549 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~  549 (553)
                      |+|+|||||+|+|+..+++|+.|+.+|++|++++|+| .+++.+|..|++++++++.+++++|+|||++.+.
T Consensus       288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~  358 (397)
T KOG0543|consen  288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKLKQKIREYEEKEKKMYANMFAKLAE  358 (397)
T ss_pred             CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            9999999999999999999999999999999999998 5799999999999999999999999999999774

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-38  Score=289.34  Aligned_cols=277  Identities=26%  Similarity=0.347  Sum_probs=243.6

Q ss_pred             CCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHhcCCCCc
Q 008788          265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE  344 (553)
Q Consensus       265 ~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~~M~~GE  344 (553)
                      .-.+|.|+||..|.|..|..+  .|.+|++||.....++.+++++||+.  .|+|+++++|.-.-++-||.+|.+|+++|
T Consensus         8 ~~~gv~Kril~~G~g~l~e~~--dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~E   83 (329)
T KOG0545|consen    8 NVEGVKKRILHGGTGELPEFI--DGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHE   83 (329)
T ss_pred             cchhhhHhhccCCCccCcccc--CCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhh
Confidence            446789999999999988664  69999999999999988999999986  59999999999999999999999999999


Q ss_pred             EEEEEeCCCC--------------cccCCCCC-------CC--C--------------CCCCeEEEEEEEeeeecCC---
Q 008788          345 IALVTCPPDY--------------AYDKFLRP-------AN--V--------------PEGAHIQWEIELLGFEKPK---  384 (553)
Q Consensus       345 ~~~~~~~~~~--------------~yg~~g~~-------~~--i--------------p~~~~l~~~ieL~~~~~~~---  384 (553)
                      ++.|+|.-..              +-|+....       ..  +              ..-.+|+|.++|+.++.|.   
T Consensus        84 vaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq  163 (329)
T KOG0545|consen   84 VAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQ  163 (329)
T ss_pred             HHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhc
Confidence            9999995421              11221100       00  0              0015799999999998874   


Q ss_pred             -CCCCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc----CCCChhHHHHHhhhhhHHHHHHHHHHHH
Q 008788          385 -DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLK  459 (553)
Q Consensus       385 -~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~----~~~~~ee~~~~~~~~~~~~~nla~~~~k  459 (553)
                       +.|.|+.++++.....++++||.+|+.|+|.+|..+|+.|+..+..+    .|.+ .||.++......+++|.|+|+++
T Consensus       164 ~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e-~eW~eLdk~~tpLllNy~QC~L~  242 (329)
T KOG0545|consen  164 RETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGE-PEWLELDKMITPLLLNYCQCLLK  242 (329)
T ss_pred             cccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCC-hHHHHHHHhhhHHHHhHHHHHhh
Confidence             45789999999999999999999999999999999999999988765    3443 67888888889999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008788          460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENS  539 (553)
Q Consensus       460 l~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~  539 (553)
                      .++|.+++++|+.+|..+|.|+|||||||+|+....+.++|.++|.++|+++|+-.+.+.++|+.+..++++.+..+|-.
T Consensus       243 ~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~  322 (329)
T KOG0545|consen  243 KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLR  322 (329)
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988889999999999999999999999


Q ss_pred             HHhhccc
Q 008788          540 LKGCLTR  546 (553)
Q Consensus       540 ~~~mf~~  546 (553)
                      |.+||+.
T Consensus       323 ~~kmfs~  329 (329)
T KOG0545|consen  323 CRKMFSQ  329 (329)
T ss_pred             HHHhcCC
Confidence            9999974

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.1e-35  Score=288.36  Aligned_cols=347  Identities=24%  Similarity=0.359  Sum_probs=266.0

Q ss_pred             ecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccC
Q 008788           37 RPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYG  116 (553)
Q Consensus        37 ~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g  116 (553)
                      ++|.|..+|..||.|.+||++++.||+.||||.+     +.|+.|.+|.|+++.||..++..|+.              |
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-----~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g   61 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-----GDPFKFDLGKGSVIKGWDLGVATMKK--------------G   61 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecCCeecccccC-----CCceeeecCCCccccccccccccccc--------------c
Confidence            4799998899999999999999999999999985     78999999999999999999999998              5


Q ss_pred             CCCCCCCCCCCCCCCCeEEEEEEEEeeeccccccCCCCeEEEEEecCCC-cCCCCCCceEEEEEEEEeCCCcEEeecCCC
Q 008788          117 EDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTGDGKLILSHREG  195 (553)
Q Consensus       117 ~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~~~~~~d~g~~~~i~~~g~g-~~~~~~gd~V~v~y~~~~~~g~~~~s~~~~  195 (553)
                      +.+.|    +.||++++|+|+|++.          |.+++++|+++|.| ..+|..|..|+|||.+++.++ +|+++.- 
T Consensus        62 ~~~~p----p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~-  125 (397)
T KOG0543|consen   62 EAGSP----PKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQREL-  125 (397)
T ss_pred             ccCCC----CCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecccc-
Confidence            55554    7899999999999998          78999999999999 899999999999999998888 6665432 


Q ss_pred             CceEEEcCC-CCccchHHHhhccCCcCcEEEEEEeCCccCCC--CCCCCCCCCceEEEEEEEeeeeeeeeccCCCceEEE
Q 008788          196 EPYFFTFGK-SEVPKGLEMGIGTMTREEKAVIYVTSQYLTPS--PLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKR  272 (553)
Q Consensus       196 ~p~~~~~g~-~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~--~~~~~i~~~~~l~~~v~l~~~~~~~d~~~dg~l~k~  272 (553)
                       .|.|..|+ ..++.||+.+|..|++||.+.|+|+|+|+||+  ..++.||||++|.|+|+|++|.-..+.+        
T Consensus       126 -~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s--------  196 (397)
T KOG0543|consen  126 -RFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDES--------  196 (397)
T ss_pred             -ceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccc--------
Confidence             37777777 47999999999999999999999999999995  4678999999999999999995211111        


Q ss_pred             EEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCC-chhHHHHHHhcCCCCcEEEEEeC
Q 008788          273 RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL-VPEGFEMCVRLMLPGEIALVTCP  351 (553)
Q Consensus       273 il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~-v~~g~e~~l~~M~~GE~~~~~~~  351 (553)
                            +.       .....++.+..+. .+.|+.+             |.-|.-. -..-++.|+..|.          
T Consensus       197 ------~~-------~~~~e~l~~A~~~-ke~Gn~~-------------fK~gk~~~A~~~Yerav~~l~----------  239 (397)
T KOG0543|consen  197 ------WK-------MFAEERLEAADRK-KERGNVL-------------FKEGKFKLAKKRYERAVSFLE----------  239 (397)
T ss_pred             ------cc-------cchHHHHHHHHHH-HHhhhHH-------------HhhchHHHHHHHHHHHHHHhh----------
Confidence                  00       0000000000000 0012221             2222211 2333444443331          


Q ss_pred             CCCcccCCCCCCCCCCCCeEEEEEEEeeeecCCCCCCCChh-hHHH---HHHHHHhhhccccccCCHHHHHHHHHHHHHH
Q 008788          352 PDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFD-GIMD---EAEKIRVTGNRLFKEGKFELAKAKYEKVLRD  427 (553)
Q Consensus       352 ~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~-e~~~---~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~  427 (553)
                          |..     .                        .+.+ +...   ....+.+.+-.+.+.++|..|+...+++|. 
T Consensus       240 ----~~~-----~------------------------~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe-  285 (397)
T KOG0543|consen  240 ----YRR-----S------------------------FDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE-  285 (397)
T ss_pred             ----ccc-----c------------------------CCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence                000     0                        0111 1111   233466888889999999999999999999 


Q ss_pred             hhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 008788          428 FNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA-QRDFEM  506 (553)
Q Consensus       428 l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A-~~~l~~  506 (553)
                         ++|.+           +.+++.+|.|++.+++|+.|+.++++|++++|+|..+.-.+..+.....++.+. .+.|.+
T Consensus       286 ---~~~~N-----------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~  351 (397)
T KOG0543|consen  286 ---LDPNN-----------VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN  351 (397)
T ss_pred             ---cCCCc-----------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               78887           789999999999999999999999999999999988888888888887776665 777887


Q ss_pred             HHHhCC
Q 008788          507 MMKVDK  512 (553)
Q Consensus       507 al~l~P  512 (553)
                      .+..-+
T Consensus       352 mF~k~~  357 (397)
T KOG0543|consen  352 MFAKLA  357 (397)
T ss_pred             Hhhccc
Confidence            776544

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=9.1e-29  Score=216.51  Aligned_cols=171  Identities=21%  Similarity=0.295  Sum_probs=140.5

Q ss_pred             EEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeeccccc---cCCCCeEE
Q 008788           81 HVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKII---ADDFGVVK  157 (553)
Q Consensus        81 ~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~~~~---~~d~g~~~  157 (553)
                      |.+|.+.+++|++.++.+|+.|+++.+.+||+++||..+..        .-..++|.+.++.+..+...   ..+..+..
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I   72 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG--------DLNILVITILLVLLFRASAAEKWNPDEELQI   72 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc--------cccceEEEeeeeehhhhhhhhhcCCCCceeE
Confidence            35788999999999999999999999999999999965542        13456777777665433211   13344444


Q ss_pred             EEEecCC-CcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCC
Q 008788          158 KVINEGQ-GWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTP  235 (553)
Q Consensus       158 ~i~~~g~-g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g  235 (553)
                      .++..-. .....+.||.|.+||++.+.||++||||. ++.|++|.||.+++|+||+.||.+|++||++.++|||+++||
T Consensus        73 ~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG  152 (188)
T KOG0549|consen   73 GVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYG  152 (188)
T ss_pred             EEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCc
Confidence            4444311 34778899999999999999999999996 578999999999999999999999999999999999999999


Q ss_pred             CCC-CCCCCCCceEEEEEEEeeeee
Q 008788          236 SPL-MPVVEGCEEVHFEVELVHLIQ  259 (553)
Q Consensus       236 ~~~-~~~i~~~~~l~~~v~l~~~~~  259 (553)
                      +++ ++.||++++|+|||||+++.+
T Consensus       153 ~~G~~~~IP~~A~LiFdiELv~i~~  177 (188)
T KOG0549|consen  153 ERGAPPKIPGDAVLIFDIELVKIER  177 (188)
T ss_pred             cCCCCCCCCCCeeEEEEEEEEEeec
Confidence            965 566999999999999999964

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.6e-28  Score=214.95  Aligned_cols=175  Identities=23%  Similarity=0.323  Sum_probs=145.9

Q ss_pred             EEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCceEEEEEEEeeeeee---eeccCCCceEEEEEec
Q 008788          200 FTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQV---RDMLGDGRLIKRRIRD  276 (553)
Q Consensus       200 ~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~~l~~~v~l~~~~~~---~d~~~dg~l~k~il~~  276 (553)
                      +++|.+.++||++.+|.+|+.||++.+++||+++||....   ..--.++|.+.++.+...   ..+..+..+.-.++++
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~~   77 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR---GDLNILVITILLVLLFRASAAEKWNPDEELQIGVLKK   77 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCccccccccc---ccccceEEEeeeeehhhhhhhhhcCCCCceeEEEEEC
Confidence            3578899999999999999999999999999999994321   122346777777776643   3455667777777777


Q ss_pred             CCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHhcCCCCcEEEEEeCCCCcc
Q 008788          277 GKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY  356 (553)
Q Consensus       277 G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~~M~~GE~~~~~~~~~~~y  356 (553)
                      -....  .....||.+.+||++.++|  |++|+ |++. +++|++|.||.++||+|||.+|.+|++||+..++|||+++|
T Consensus        78 p~~C~--~kak~GD~l~~HY~g~leD--Gt~fd-SS~~-rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgY  151 (188)
T KOG0549|consen   78 PEECP--EKAKKGDTLHVHYTGSLED--GTKFD-SSYS-RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGY  151 (188)
T ss_pred             Ccccc--ccccCCCEEEEEEEEEecC--CCEEe-eecc-CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccC
Confidence            33221  2347899999999999987  99985 5554 68999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCeEEEEEEEeeeecC
Q 008788          357 DKFLRPANVPEGAHIQWEIELLGFEKP  383 (553)
Q Consensus       357 g~~g~~~~ip~~~~l~~~ieL~~~~~~  383 (553)
                      |+.|.++.||+++.|.|+|||+++...
T Consensus       152 G~~G~~~~IP~~A~LiFdiELv~i~~~  178 (188)
T KOG0549|consen  152 GERGAPPKIPGDAVLIFDIELVKIERG  178 (188)
T ss_pred             ccCCCCCCCCCCeeEEEEEEEEEeecC
Confidence            999999899999999999999999874

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=6.9e-27  Score=179.79  Aligned_cols=106  Identities=30%  Similarity=0.608  Sum_probs=102.3

Q ss_pred             ceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEE
Q 008788           30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM  109 (553)
Q Consensus        30 g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~i  109 (553)
                      |+.++++++|+|...|++||+|++||++.+.||+.||||.+    ++.|+.|.+|.|++|.||++++..|.+|+++.++|
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~d----r~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti   77 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRD----RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTI   77 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccc----cCCCeeEEecCcceeechhhcchhccccccceeee
Confidence            68999999999998899999999999999999999999999    89999999999999999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788          110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       110 p~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~  143 (553)
                      .|++|||..|.|    ..||||++|+|+|||+++
T Consensus        78 ~pd~aYG~~G~p----~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   78 SPDYAYGPRGHP----GGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ccccccCCCCCC----CccCCCcEEEEEEEEEec
Confidence            999999999965    789999999999999986

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.5e-26  Score=207.61  Aligned_cols=112  Identities=31%  Similarity=0.633  Sum_probs=106.1

Q ss_pred             hhccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCC
Q 008788           21 KRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML  100 (553)
Q Consensus        21 ~~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~  100 (553)
                      +..+.++++||.|++++.|+|.. |..+|.|.+||+|++.||++|||+++    +++|+.|.+|  ++|+||.++|.+|+
T Consensus        93 ~~~v~~~~sgl~y~~~~~G~G~~-~~~~~~V~vhY~G~l~~G~vFDsS~~----rg~p~~f~l~--~vI~Gw~egl~~M~  165 (205)
T COG0545          93 EKGVKTLPSGLQYKVLKAGDGAA-PKKGDTVTVHYTGTLIDGTVFDSSYD----RGQPAEFPLG--GVIPGWDEGLQGMK  165 (205)
T ss_pred             cCCceECCCCcEEEEEeccCCCC-CCCCCEEEEEEEEecCCCCccccccc----cCCCceeecC--CeeehHHHHHhhCC
Confidence            45677899999999999999998 99999999999999999999999998    9999999996  99999999999999


Q ss_pred             CCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788          101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       101 ~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~  143 (553)
                      +|+++.++|||++|||.+|.+    ..||||++|+|+|+|+++
T Consensus       166 vG~k~~l~IP~~laYG~~g~~----g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         166 VGGKRKLTIPPELAYGERGVP----GVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             CCceEEEEeCchhccCcCCCC----CCCCCCCeEEEEEEEEec
Confidence            999999999999999999975    459999999999999987

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.4e-25  Score=171.36  Aligned_cols=107  Identities=36%  Similarity=0.597  Sum_probs=98.6

Q ss_pred             ceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHhcCCCCcEEE
Q 008788          268 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIAL  347 (553)
Q Consensus       268 ~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~~M~~GE~~~  347 (553)
                      ++.+.+|..|+|.+   .|++|++|++||+|.|.|  |+.| ||+.+ +++||.|.+|.|+||.||+.++..|.+||++.
T Consensus         2 Gv~~~~i~~Gdg~t---fpK~Gqtvt~hYtg~L~d--G~kf-DSs~d-r~kPfkf~IGkgeVIkGwdegv~qmsvGekak   74 (108)
T KOG0544|consen    2 GVEKQVISPGDGRT---FPKKGQTVTVHYTGTLQD--GKKF-DSSRD-RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAK   74 (108)
T ss_pred             CceeEEeeCCCCcc---cCCCCCEEEEEEEeEecC--CcEe-ecccc-cCCCeeEEecCcceeechhhcchhccccccce
Confidence            37789999999963   358999999999999987  9998 66666 68999999999999999999999999999999


Q ss_pred             EEeCCCCcccCCCCCCCCCCCCeEEEEEEEeeee
Q 008788          348 VTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  381 (553)
Q Consensus       348 ~~~~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~  381 (553)
                      ++|+|+||||..|.+..||||++|.|+|||++++
T Consensus        75 Lti~pd~aYG~~G~p~~IppNatL~FdVEll~v~  108 (108)
T KOG0544|consen   75 LTISPDYAYGPRGHPGGIPPNATLVFDVELLKVN  108 (108)
T ss_pred             eeeccccccCCCCCCCccCCCcEEEEEEEEEecC
Confidence            9999999999999999999999999999999763

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=3.6e-23  Score=185.90  Aligned_cols=104  Identities=24%  Similarity=0.333  Sum_probs=98.4

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeec-CCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSH-REGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (553)
Q Consensus       151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~-~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~  229 (553)
                      ..+|+.+.++..|.| ..|+.++.|+|||+|++.||++|||| .+|.|+.|.+|  ++|+||.+||.+|++|++++++||
T Consensus        99 ~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~IP  175 (205)
T COG0545          99 LPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTIP  175 (205)
T ss_pred             CCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEeC
Confidence            567999999999999 88999999999999999999999999 57999999998  999999999999999999999999


Q ss_pred             CCccCCCCCC-CCCCCCceEEEEEEEeee
Q 008788          230 SQYLTPSPLM-PVVEGCEEVHFEVELVHL  257 (553)
Q Consensus       230 ~~~~~g~~~~-~~i~~~~~l~~~v~l~~~  257 (553)
                      |++|||.++. ..||||++|+|+|+|+++
T Consensus       176 ~~laYG~~g~~g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         176 PELAYGERGVPGVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             chhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence            9999999874 449999999999999986

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.88  E-value=2.1e-22  Score=188.07  Aligned_cols=112  Identities=24%  Similarity=0.453  Sum_probs=105.4

Q ss_pred             hhccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCC
Q 008788           21 KRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML  100 (553)
Q Consensus        21 ~~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~  100 (553)
                      +.....+++|++|+|+++|+|.. |..||.|.+||++++.||++|+||+.    ++.|+.|.+|  .+++||+++|.+|+
T Consensus        94 ~~gv~~t~sGl~y~vi~~G~G~~-p~~~d~V~v~Y~g~l~dG~vfdss~~----~g~P~~f~l~--~vipG~~eaL~~M~  166 (206)
T PRK11570         94 KEGVNSTESGLQFRVLTQGEGAI-PARTDRVRVHYTGKLIDGTVFDSSVA----RGEPAEFPVN--GVIPGWIEALTLMP  166 (206)
T ss_pred             cCCcEECCCCcEEEEEeCCCCCC-CCCCCEEEEEEEEEECCCCEEEeccC----CCCCeEEEee--chhhHHHHHHcCCC
Confidence            45778899999999999999997 99999999999999999999999997    7889999995  69999999999999


Q ss_pred             CCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788          101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       101 ~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~  143 (553)
                      +|+++.|+|||++|||..+.+    +.|||+++|+|+|+|++|
T Consensus       167 ~G~k~~~~IP~~lAYG~~g~~----~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        167 VGSKWELTIPHELAYGERGAG----ASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             CCCEEEEEECHHHcCCCCCCC----CCcCCCCeEEEEEEEEEE
Confidence            999999999999999999875    689999999999999987

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=2e-22  Score=186.07  Aligned_cols=118  Identities=24%  Similarity=0.473  Sum_probs=108.2

Q ss_pred             CCChhhhhccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEec-CCcEEEeccccCCCCCcceE-EEcCCCccchhH
Q 008788           15 APSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIR-HVLGKSKILLGL   92 (553)
Q Consensus        15 ~~~~~~~~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~-~g~~~~st~~~~~~~~~p~~-~~~G~~~~~~g~   92 (553)
                      .-.++..+..++.++||.|+.++.|+|.. |..|+.|.+||.+++. +|++|++++.     +.|+. |.+|.+++|+||
T Consensus       106 ~~~ek~~~~~~tl~~Gl~y~D~~vG~G~~-a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-----~kp~~~f~lg~g~VIkG~  179 (226)
T KOG0552|consen  106 KEVEKQKPKSRTLPGGLRYEDLRVGSGPS-AKKGKRVSVRYIGKLKGNGKVFDSNFG-----GKPFKLFRLGSGEVIKGW  179 (226)
T ss_pred             ccccccCccceecCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEecCCCeEeecccC-----CCCccccccCCCCCCchH
Confidence            33455555557889999999999999998 9999999999999998 9999999984     77888 999999999999


Q ss_pred             HhhcCCCCCCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788           93 LEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus        93 ~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~  143 (553)
                      +.+|.||++|.+++|+|||++|||..+.     +.||||++|+|+|+|+.+
T Consensus       180 d~gv~GMkvGGkRrviIPp~lgYg~~g~-----~~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  180 DVGVEGMKVGGKRRVIIPPELGYGKKGV-----PEIPPNSTLVFDVELLSV  225 (226)
T ss_pred             HHhhhhhccCCeeEEEeCccccccccCc-----CcCCCCCcEEEEEEEEec
Confidence            9999999999999999999999999987     489999999999999986

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.86  E-value=4.4e-21  Score=174.88  Aligned_cols=111  Identities=19%  Similarity=0.326  Sum_probs=101.3

Q ss_pred             cccCCCceEEEEEec--CCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCC
Q 008788           24 MKIVPGSLMKAVMRP--GGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (553)
Q Consensus        24 ~~~~~~g~~~~i~~~--G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~  101 (553)
                      ...+++|++|.+++.  |+|.. |+.||.|.+||++++.||++|+|++.     ..|+.|.+|.+++++||+++|.+|++
T Consensus        64 ~~~t~sGl~Y~v~~~~~g~g~~-p~~gd~V~v~Y~~~~~dG~v~~ss~~-----~~P~~f~vg~~~vi~Gl~e~L~~Mk~  137 (177)
T TIGR03516        64 YETSQNGFWYYYNQKDTGEGTT-PEFGDLVTFEYDIRALDGDVIYSEEE-----LGPQTYKVDQQDLFSGLRDGLKLMKE  137 (177)
T ss_pred             ceECCCccEEEEEEecCCCCCc-CCCCCEEEEEEEEEeCCCCEEEeCCC-----CCCEEEEeCCcchhHHHHHHHcCCCC
Confidence            367899999999987  55555 89999999999999999999999985     45999999999999999999999999


Q ss_pred             CcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 008788          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (553)
Q Consensus       102 G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~  144 (553)
                      ||+++|+|||++|||..|.+    ..||+|++|+|+|+|++|.
T Consensus       138 Ge~~~~~iP~~~AYG~~g~~----~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       138 GETATFLFPSHKAYGYYGDQ----NKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             CCEEEEEECHHHcCCCCCCC----CCcCcCCcEEEEEEEEEec
Confidence            99999999999999998865    6799999999999999985

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.83  E-value=4.3e-20  Score=178.78  Aligned_cols=114  Identities=25%  Similarity=0.509  Sum_probs=104.9

Q ss_pred             hhccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCC
Q 008788           21 KRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML  100 (553)
Q Consensus        21 ~~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~  100 (553)
                      +.+...+++||+|+|+++|+|.. |+.||.|.|||++++.||++|+|++.    ++.|+.|.+  +.++|||+++|.+|+
T Consensus       138 ~~gv~~t~sGl~y~Vi~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~----~g~p~~f~l--~~vipG~~EaL~~Mk  210 (269)
T PRK10902        138 EKGVKTTSTGLLYKVEKEGTGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRL--DGVIPGWTEGLKNIK  210 (269)
T ss_pred             CCCcEECCCccEEEEEeCCCCCC-CCCCCEEEEEEEEEeCCCCEeecccc----CCCceEEec--CCcchHHHHHHhcCC
Confidence            34567889999999999999997 89999999999999999999999997    788999998  469999999999999


Q ss_pred             CCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeecc
Q 008788          101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA  146 (553)
Q Consensus       101 ~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~  146 (553)
                      +|+++.|+||++++||..+.     ++||+|++|+|+|+|+++.+.
T Consensus       211 ~Gek~~l~IP~~laYG~~g~-----~gIppns~LvfeVeLl~V~~~  251 (269)
T PRK10902        211 KGGKIKLVIPPELAYGKAGV-----PGIPANSTLVFDVELLDVKPA  251 (269)
T ss_pred             CCcEEEEEECchhhCCCCCC-----CCCCCCCcEEEEEEEEEeccC
Confidence            99999999999999999875     479999999999999999754

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=4.1e-20  Score=170.77  Aligned_cols=106  Identities=23%  Similarity=0.329  Sum_probs=101.9

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeC-CCcEEeecCCCCceE-EEcCCCCccchHHHhhccCCcCcEEEEEE
Q 008788          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTG-DGKLILSHREGEPYF-FTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (553)
Q Consensus       151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~-~g~~~~s~~~~~p~~-~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v  228 (553)
                      ...|+++.-++.|.| +.+..|+.|.|||.+++. +|.+|+++..+.|+. |.+|.+++|+||+.++.+|++|.+++|+|
T Consensus       118 l~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrviI  196 (226)
T KOG0552|consen  118 LPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRVII  196 (226)
T ss_pred             cCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEEEe
Confidence            457999999999999 999999999999999998 999999999999999 99999999999999999999999999999


Q ss_pred             eCCccCCCCCCCCCCCCceEEEEEEEeee
Q 008788          229 TSQYLTPSPLMPVVEGCEEVHFEVELVHL  257 (553)
Q Consensus       229 ~~~~~~g~~~~~~i~~~~~l~~~v~l~~~  257 (553)
                      ||++|||.++.+.||+|++|+|+|+|+.+
T Consensus       197 Pp~lgYg~~g~~~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  197 PPELGYGKKGVPEIPPNSTLVFDVELLSV  225 (226)
T ss_pred             CccccccccCcCcCCCCCcEEEEEEEEec
Confidence            99999999999999999999999999986

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.81  E-value=2.1e-19  Score=163.90  Aligned_cols=107  Identities=20%  Similarity=0.164  Sum_probs=98.1

Q ss_pred             CCCCeEEEEEec--CCCcCCCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEE
Q 008788          151 DDFGVVKKVINE--GQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (553)
Q Consensus       151 ~d~g~~~~i~~~--g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v  228 (553)
                      ...|+.+.++.+  |.| ..|+.||.|++||++++.||++|+|+....|+.|.+|.+++++||+++|.+|++||+++|+|
T Consensus        67 t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~i  145 (177)
T TIGR03516        67 SQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLF  145 (177)
T ss_pred             CCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEE
Confidence            456899988876  555 78999999999999999999999999877899999999999999999999999999999999


Q ss_pred             eCCccCCCCC-CCCCCCCceEEEEEEEeeee
Q 008788          229 TSQYLTPSPL-MPVVEGCEEVHFEVELVHLI  258 (553)
Q Consensus       229 ~~~~~~g~~~-~~~i~~~~~l~~~v~l~~~~  258 (553)
                      ||++|||..+ ...||+|++|+|+|+|+++.
T Consensus       146 P~~~AYG~~g~~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       146 PSHKAYGYYGDQNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             CHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence            9999999864 46799999999999999984

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.81  E-value=1.9e-19  Score=171.25  Aligned_cols=125  Identities=28%  Similarity=0.478  Sum_probs=117.3

Q ss_pred             hHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (553)
Q Consensus       393 e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  472 (553)
                      +....|+.+|.+||.+++.++|.+|+.+|.+||.    +.|.+           ..+|+|+|++|.++|+|..|+++|..
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~----l~P~n-----------AVyycNRAAAy~~Lg~~~~AVkDce~  140 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIE----LDPTN-----------AVYYCNRAAAYSKLGEYEDAVKDCES  140 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh----cCCCc-----------chHHHHHHHHHHHhcchHHHHHHHHH
Confidence            6778899999999999999999999999999999    88888           78999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 008788          473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLK  533 (553)
Q Consensus       473 al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~  533 (553)
                      ||.+||+..|+|-|+|.||..+|+|++|++.|++||.|||+|+ ..+..|+.+++++.+..
T Consensus       141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne-~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE-SYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999999985 68888888887776554

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.80  E-value=6.5e-19  Score=156.99  Aligned_cols=135  Identities=31%  Similarity=0.554  Sum_probs=120.0

Q ss_pred             hhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  471 (553)
Q Consensus       392 ~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  471 (553)
                      +..+..+..+|..||.+|+.|+|.+|...|..||..+..+   .       .+.+..||.|+|.|++|++.|+.|+..|.
T Consensus        89 ~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~---~-------~e~rsIly~Nraaa~iKl~k~e~aI~dcs  158 (271)
T KOG4234|consen   89 DKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPST---S-------TEERSILYSNRAAALIKLRKWESAIEDCS  158 (271)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc---c-------HHHHHHHHhhhHHHHHHhhhHHHHHHHHH
Confidence            3446789999999999999999999999999999964332   2       23457799999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008788          472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLE  537 (553)
Q Consensus       472 ~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~  537 (553)
                      +||+++|.+.||+-|||.+|..+..|++|+.+|++.++++|.+. .+++.+.+|-.++.+.+++.+
T Consensus       159 Kaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~-ear~~i~rl~~~i~ernEkmK  223 (271)
T KOG4234|consen  159 KAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR-EAREAIARLPPKINERNEKMK  223 (271)
T ss_pred             hhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH-HHHHHHHhcCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999974 788888888888877776654

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.78  E-value=2.1e-18  Score=161.18  Aligned_cols=105  Identities=22%  Similarity=0.279  Sum_probs=97.4

Q ss_pred             cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEE
Q 008788          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (553)
Q Consensus       150 ~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v  228 (553)
                      ..++|+.++++++|.| ..|+.+|.|.|||++++.||++|+|+. ++.|+.|.++  +++|||+++|.+|++|+++.|+|
T Consensus        99 ~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~I  175 (206)
T PRK11570         99 STESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTI  175 (206)
T ss_pred             ECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEE
Confidence            3567999999999999 789999999999999999999999986 5789999996  79999999999999999999999


Q ss_pred             eCCccCCCCC-CCCCCCCceEEEEEEEeee
Q 008788          229 TSQYLTPSPL-MPVVEGCEEVHFEVELVHL  257 (553)
Q Consensus       229 ~~~~~~g~~~-~~~i~~~~~l~~~v~l~~~  257 (553)
                      ||+++||..+ ++.|||+++|+|+|+|+++
T Consensus       176 P~~lAYG~~g~~~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        176 PHELAYGERGAGASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             CHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence            9999999964 4689999999999999987

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.78  E-value=2.6e-18  Score=141.75  Aligned_cols=94  Identities=35%  Similarity=0.606  Sum_probs=86.5

Q ss_pred             CCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCC
Q 008788           41 GDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDC  120 (553)
Q Consensus        41 g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~  120 (553)
                      |...|+.||.|.+||++++.+|++|++++.    .+.|+.|.+|.+++++||+.+|.+|++|+++.|.||++++||..+.
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~----~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~   76 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQ----EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGL   76 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETTT----TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTB
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEeee----cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCcccc
Confidence            455689999999999999999999999986    6789999999999999999999999999999999999999999886


Q ss_pred             CCCCCCCCCCCCeEEEEEEEE
Q 008788          121 PVAAPSTFPKDEELHFEIEMI  141 (553)
Q Consensus       121 ~~~~~~~i~~~~~l~~~v~l~  141 (553)
                      ..   ..||++++|+|+|+|+
T Consensus        77 ~~---~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   77 EP---PKIPPNSTLVFEIELL   94 (94)
T ss_dssp             CT---TTBTTTSEEEEEEEEE
T ss_pred             CC---CCcCCCCeEEEEEEEC
Confidence            42   4699999999999986

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.74  E-value=2.1e-17  Score=136.34  Aligned_cols=91  Identities=31%  Similarity=0.439  Sum_probs=83.8

Q ss_pred             CcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCC--CC
Q 008788          165 GWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM--PV  241 (553)
Q Consensus       165 g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~--~~  241 (553)
                      |.+.|+.||.|++||++++.+|+.|+++. .+.|+.|.+|.+++++||+++|.+|++||++.|+|||+++||..+.  ..
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~   80 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK   80 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence            34679999999999999999999999984 6789999999999999999999999999999999999999998654  45


Q ss_pred             CCCCceEEEEEEEe
Q 008788          242 VEGCEEVHFEVELV  255 (553)
Q Consensus       242 i~~~~~l~~~v~l~  255 (553)
                      ||++++|+|+|+|+
T Consensus        81 ip~~~~l~f~Iell   94 (94)
T PF00254_consen   81 IPPNSTLVFEIELL   94 (94)
T ss_dssp             BTTTSEEEEEEEEE
T ss_pred             cCCCCeEEEEEEEC
Confidence            99999999999985

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.72  E-value=5.7e-17  Score=157.15  Aligned_cols=106  Identities=24%  Similarity=0.344  Sum_probs=98.7

Q ss_pred             cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEE
Q 008788          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (553)
Q Consensus       150 ~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v  228 (553)
                      ..++|+.++++.+|.| ..|+.||.|+|||.+++.||++|+++. ++.|+.|.++  +++|||+++|.+|++|+++.|+|
T Consensus       143 ~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~I  219 (269)
T PRK10902        143 TTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVI  219 (269)
T ss_pred             ECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEEE
Confidence            3568999999999999 789999999999999999999999985 5789999885  69999999999999999999999


Q ss_pred             eCCccCCCCCCCCCCCCceEEEEEEEeeee
Q 008788          229 TSQYLTPSPLMPVVEGCEEVHFEVELVHLI  258 (553)
Q Consensus       229 ~~~~~~g~~~~~~i~~~~~l~~~v~l~~~~  258 (553)
                      |++++||..+.+.||+|++|+|+|+|+++.
T Consensus       220 P~~laYG~~g~~gIppns~LvfeVeLl~V~  249 (269)
T PRK10902        220 PPELAYGKAGVPGIPANSTLVFDVELLDVK  249 (269)
T ss_pred             CchhhCCCCCCCCCCCCCcEEEEEEEEEec
Confidence            999999998777899999999999999985

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=4.4e-16  Score=150.98  Aligned_cols=243  Identities=24%  Similarity=0.354  Sum_probs=176.3

Q ss_pred             EEEEEEEEEEecCCCcEEEeccCCC---CCCCeEEEeCCCCchhHHHHH--HhcCCCCcEE----EEEe--CCCCcccC-
Q 008788          291 LLCVHYKGMLLNEEKKVFYDTRVDN---DGQPLEFSSGEGLVPEGFEMC--VRLMLPGEIA----LVTC--PPDYAYDK-  358 (553)
Q Consensus       291 ~V~v~y~~~~~~~~g~~~~~s~~~~---~~~~~~f~lG~~~v~~g~e~~--l~~M~~GE~~----~~~~--~~~~~yg~-  358 (553)
                      ++++...|  +|++|+.||.|+...   +|..++|    |+||.|.+.+  |...+..+..    .|.|  ..++.-+. 
T Consensus       110 lLSMAN~G--pNTNgSQFFITT~p~PHLdGkHVVF----GqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~~~  183 (372)
T KOG0546|consen  110 LLSMANRG--PNTNGSQFFITTVPTPHLDGKHVVF----GQVIKGKEVVREIENLETDEESKPLADVVISDCGELVKKSK  183 (372)
T ss_pred             hhhhhcCC--CCCCCcceEEeCCCCCCcCCceeEE----eeEeechhHHHHHhccccccCCCCccceEeccccccccccc
Confidence            45566666  678899999998754   5677777    5688777654  4444444332    2222  12221110 


Q ss_pred             --CCCCCCCCCCCeEEEEEEEeeeec-CCCCCCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCC
Q 008788          359 --FLRPANVPEGAHIQWEIELLGFEK-PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD  435 (553)
Q Consensus       359 --~g~~~~ip~~~~l~~~ieL~~~~~-~~~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~  435 (553)
                        ....+.-+....-.++    ++.. ...|...+....+..++..++.|+..|+.++|..|...|.++++++.. .+.+
T Consensus       184 ~~~~~~a~~~~~sgd~~~----d~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~-~s~~  258 (372)
T KOG0546|consen  184 VKEDAGASEPDETGDSYE----DYPKDDRSWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSE-QSRD  258 (372)
T ss_pred             ccccccCCCCCCCCCccc----ccccccccccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcc-cccc
Confidence              0000000111111111    1110 112223345666778889999999999999999999999999999875 2222


Q ss_pred             h-hH----HHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          436 D-EE----GKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       436 ~-ee----~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      . .+    ...+..++..++.|++.|-++++.|..|+..|..+++.++++.+||||+++++..+.++++|+++++.|...
T Consensus       259 ~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~  338 (372)
T KOG0546|consen  259 REKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK  338 (372)
T ss_pred             cccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence            1 11    233666777899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008788          511 DKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLT  545 (553)
Q Consensus       511 ~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (553)
                      +|++ ..+.+++...+++..+++.++++.+++||+
T Consensus       339 ~p~d-~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s  372 (372)
T KOG0546|consen  339 APND-KAIEEELENVRQKKKQYNRKQKKALSKMFS  372 (372)
T ss_pred             Ccch-HHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence            9996 579999999999999999999999999995

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=1.4e-15  Score=152.28  Aligned_cols=109  Identities=31%  Similarity=0.536  Sum_probs=100.3

Q ss_pred             CCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 008788          387 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  466 (553)
Q Consensus       387 ~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A  466 (553)
                      ..++.+++++.|..+|.+||.+|+.|+|++||.+|++||+    +.|..           ...|.|+|.||..+|+|++.
T Consensus       104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~----l~p~e-----------piFYsNraAcY~~lgd~~~V  168 (606)
T KOG0547|consen  104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIE----LCPDE-----------PIFYSNRAACYESLGDWEKV  168 (606)
T ss_pred             hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHh----cCCCC-----------chhhhhHHHHHHHHhhHHHH
Confidence            3578889999999999999999999999999999999999    56653           56899999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       467 ~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      +++|.+||+++|+.+|||+||+.||..||++++|+.|+....-+
T Consensus       169 ied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~  212 (606)
T KOG0547|consen  169 IEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCIL  212 (606)
T ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHh
Confidence            99999999999999999999999999999999999998854433

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.63  E-value=9.3e-16  Score=147.16  Aligned_cols=121  Identities=26%  Similarity=0.432  Sum_probs=110.0

Q ss_pred             hhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 008788          391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  470 (553)
Q Consensus       391 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  470 (553)
                      .++.+..+..++++||.+|++|+|++|+.||.+++.    +.|.+           ..++.|+|++|++++.|..|..+|
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia----~~P~N-----------pV~~~NRA~AYlk~K~FA~AE~DC  154 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA----VYPHN-----------PVYHINRALAYLKQKSFAQAEEDC  154 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc----cCCCC-----------ccchhhHHHHHHHHHHHHHHHHhH
Confidence            566788888999999999999999999999999999    77766           568999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788          471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       471 ~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~  527 (553)
                      +.|+.+|....|||-||+.|...||+..+|.++++.+|+|+|++ .+.++.+..+..
T Consensus       155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~-~ELkK~~a~i~S  210 (536)
T KOG4648|consen  155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN-IELKKSLARINS  210 (536)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc-HHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999996 456666555543

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.63  E-value=5e-15  Score=132.60  Aligned_cols=83  Identities=27%  Similarity=0.397  Sum_probs=74.4

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~  124 (553)
                      ++.||.|.+||++++.||++|+||+.    .+.|+.|.+|.+++++||+++|.+|++|+++.|.|||+.|||..      
T Consensus         5 i~~~~~V~v~Y~~~~~dG~v~dst~~----~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~------   74 (156)
T PRK15095          5 VQSNSAVLVHFTLKLDDGSTAESTRN----NGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP------   74 (156)
T ss_pred             cCCCCEEEEEEEEEeCCCCEEEECCC----CCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC------
Confidence            78999999999999999999999986    67899999999999999999999999999999999999999975      


Q ss_pred             CCCCCCCCeEEEEEEEEee
Q 008788          125 PSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       125 ~~~i~~~~~l~~~v~l~~~  143 (553)
                            +..++..+....+
T Consensus        75 ------d~~~v~~vp~~~f   87 (156)
T PRK15095         75 ------SPDLIQYFSRRDF   87 (156)
T ss_pred             ------ChHHEEEecHHHC
Confidence                  4556666655555

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=2.3e-15  Score=152.81  Aligned_cols=117  Identities=29%  Similarity=0.542  Sum_probs=108.9

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+...|+.||.+|+.|+|..|+..|.+||.    .+|.+           ..+|.|+|+||++++++..|+.+|+.++++
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIk----r~P~D-----------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL  421 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIK----RDPED-----------ARLYSNRAACYLKLGEYPEALKDAKKCIEL  421 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHh----cCCch-----------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            377788999999999999999999999999    78887           789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      ||++.|+|+|.|.|+..+.+|+.|++.|+.++++||++ .++...+.+|-..+
T Consensus       422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~-~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN-AEAIDGYRRCVEAQ  473 (539)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999997 46777777777654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=7e-15  Score=144.66  Aligned_cols=129  Identities=27%  Similarity=0.414  Sum_probs=114.0

Q ss_pred             hhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 008788          391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  470 (553)
Q Consensus       391 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  470 (553)
                      ..-..+..+.+++.||.+|+.|+|..|-++|..||.    ++|.+       .+..+.||.|+|.+..++|+..+|+.+|
T Consensus       242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~----idP~n-------~~~naklY~nra~v~~rLgrl~eaisdc  310 (486)
T KOG0550|consen  242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN----IDPSN-------KKTNAKLYGNRALVNIRLGRLREAISDC  310 (486)
T ss_pred             HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc----CCccc-------cchhHHHHHHhHhhhcccCCchhhhhhh
Confidence            344566788999999999999999999999999999    88876       3445789999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 008788          471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKL  532 (553)
Q Consensus       471 ~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~  532 (553)
                      +.|+.+|+...|||.+||.||..|++|++|+++|++|++++-+  .++++.|.+.+..+++.
T Consensus       311 ~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s--~e~r~~l~~A~~aLkkS  370 (486)
T KOG0550|consen  311 NEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD--CEIRRTLREAQLALKKS  370 (486)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999876  35777776666655543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.54  E-value=8.5e-14  Score=143.04  Aligned_cols=119  Identities=21%  Similarity=0.367  Sum_probs=110.1

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..++..|+.+|..++|..|+..|++||+    ..|.+           ..+|+++|.||+++++|.+|+.++++|+.++
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~----~~P~~-----------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~   66 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAID----LDPNN-----------AELYADRAQANIKLGNFTEAVADANKAIELD   66 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34578899999999999999999999999    77776           6789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKL  532 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~  532 (553)
                      |+++.+|+++|.+|+.+|+|++|+..|++|++++|++ ..+...+..|..+++..
T Consensus        67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~-~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD-SRFTKLIKECDEKIAEE  120 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999997 56888899998888654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=5.2e-14  Score=135.11  Aligned_cols=104  Identities=30%  Similarity=0.442  Sum_probs=94.7

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .|..+|+.||.+|+.++|..|+..|.++|+    ....+       .++.+.+|+|+|+|++-+++|..|+.+|.+|+.+
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk----~kc~D-------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~  148 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLK----KKCAD-------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL  148 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHh----hcCCC-------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999999    55555       3455789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~  511 (553)
                      +|.+.||+||-|+|++.|..+.+|..+++..+.++
T Consensus       149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence            99999999999999999999888888887766654

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=2.1e-13  Score=121.05  Aligned_cols=71  Identities=28%  Similarity=0.468  Sum_probs=66.8

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCC
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDD  119 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~  119 (553)
                      +++||.|.++|++++.||++||+|..    ...|+.|.+|.+++++||+++|.+|.+|++.+|.|||+.|||.+.
T Consensus         3 i~k~~~V~i~Y~~~~~dg~v~Dtt~e----~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~   73 (174)
T COG1047           3 IEKGDVVSLHYTLKVEDGEVVDTTDE----NYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD   73 (174)
T ss_pred             ccCCCEEEEEEEEEecCCcEEEcccc----cCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence            68999999999999999999999975    477999999999999999999999999999999999999999763

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.51  E-value=3.1e-13  Score=149.84  Aligned_cols=135  Identities=27%  Similarity=0.393  Sum_probs=116.7

Q ss_pred             CCCCCCeEEEEEEEeeeecCCCCCCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHh
Q 008788          364 NVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFV  443 (553)
Q Consensus       364 ~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~  443 (553)
                      ..|+...+....++..++. .+.+.++.+++...+..+++.|+.+|+.|+|.+|+..|++||.    +.|.         
T Consensus        94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~----~~p~---------  159 (615)
T TIGR00990        94 TAPKNAPVEPADELPEIDE-SSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIE----CKPD---------  159 (615)
T ss_pred             CCCCCCCCCccccccccch-hhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCc---------
Confidence            3455555556655555444 4456789999999999999999999999999999999999998    5553         


Q ss_pred             hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       444 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                         ..+|+|+|.||+++++|++|+.+|++||+++|++.++|+++|.+|..+|+|++|+.+|..++.+++.+.
T Consensus       160 ---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~  228 (615)
T TIGR00990       160 ---PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN  228 (615)
T ss_pred             ---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence               247999999999999999999999999999999999999999999999999999999999988877654

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.51  E-value=2.2e-13  Score=125.08  Aligned_cols=82  Identities=23%  Similarity=0.302  Sum_probs=72.7

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~  124 (553)
                      +++++.|+|+|++++.||++|++|+.     ..|+.|.+|.++++|+|+++|.+|++|++++|+|||+.|||.+      
T Consensus         3 I~~~~vV~l~Y~l~~~dG~v~dst~~-----~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~------   71 (196)
T PRK10737          3 VAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY------   71 (196)
T ss_pred             cCCCCEEEEEEEEEeCCCCEEEecCC-----CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCC------
Confidence            67899999999999999999999974     6799999999999999999999999999999999999999976      


Q ss_pred             CCCCCCCCeEEEEEEEEee
Q 008788          125 PSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       125 ~~~i~~~~~l~~~v~l~~~  143 (553)
                            +..++..|....|
T Consensus        72 ------d~~lV~~vpr~~F   84 (196)
T PRK10737         72 ------DENLVQRVPKDVF   84 (196)
T ss_pred             ------ChHHEEEecHHHC
Confidence                  4556666654444

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.44  E-value=2.3e-12  Score=114.88  Aligned_cols=109  Identities=17%  Similarity=0.294  Sum_probs=98.8

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      +...|..+++.|+|.+|+..|++++.    .+|.+           ..+++++|.++.++|+|.+|+..++++++++|++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~   91 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVM----AQPWS-----------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASH   91 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            55679999999999999999999999    78877           6799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      +.+++++|.++..+|++++|+..|++|++++|++ ..........
T Consensus        92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~-~~~~~~~~~~  135 (144)
T PRK15359         92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD-ASWSEIRQNA  135 (144)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHH
Confidence            9999999999999999999999999999999997 4454444333

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=5.3e-13  Score=135.90  Aligned_cols=113  Identities=27%  Similarity=0.462  Sum_probs=104.0

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..++++||..|..|+|+.|+..|..||.    ++|.+           +.+|.|++.||.++++|.+|+.+..+..+++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~----l~p~n-----------hvlySnrsaa~a~~~~~~~al~da~k~~~l~   66 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIM----LSPTN-----------HVLYSNRSAAYASLGSYEKALKDATKTRRLN   66 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHc----cCCCc-----------cchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            56788999999999999999999999999    78877           7899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      |.++|+|+|+|.+++.||+|++|+..|...|+.+|+|+ ....-|....
T Consensus        67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~-~L~~gl~~a~  114 (539)
T KOG0548|consen   67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNK-QLKTGLAQAY  114 (539)
T ss_pred             CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchH-HHHHhHHHhh
Confidence            99999999999999999999999999999999999984 3555555544

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.42  E-value=2.9e-13  Score=121.23  Aligned_cols=72  Identities=21%  Similarity=0.304  Sum_probs=67.6

Q ss_pred             CCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCC
Q 008788          168 TPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM  239 (553)
Q Consensus       168 ~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~  239 (553)
                      .++.|+.|++||++++.||++|+||.. ++|+.|.+|.+++++||+++|.+|++|+++.|.|||+.+||..++
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d~   76 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPSP   76 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence            578899999999999999999999974 799999999999999999999999999999999999999997754

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=9.3e-13  Score=121.15  Aligned_cols=118  Identities=25%  Similarity=0.360  Sum_probs=105.6

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+++.||.+|...+|..|+.+|.+||.    ++|..           +..|.|+|+||+++++|+.+..+|.+|++
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~----~nP~~-----------~~Y~tnralchlk~~~~~~v~~dcrralq   72 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAIC----INPTV-----------ASYYTNRALCHLKLKHWEPVEEDCRRALQ   72 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHh----cCCCc-----------chhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence            3588899999999999999999999999999    78766           67899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHH
Q 008788          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD----KSSEPDATAALSKLKKQ  528 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~----P~~~~~~~~~l~~l~~~  528 (553)
                      ++|+.+|++|-+|.+++....|++|+..|++|..+-    +.+..++.++|...+.+
T Consensus        73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~  129 (284)
T KOG4642|consen   73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK  129 (284)
T ss_pred             cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence            999999999999999999999999999999997762    22334688888777654

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.38  E-value=2.8e-12  Score=117.88  Aligned_cols=73  Identities=16%  Similarity=0.097  Sum_probs=68.6

Q ss_pred             CCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCC
Q 008788          168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP  240 (553)
Q Consensus       168 ~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~  240 (553)
                      +++.++.|+++|++++.+|++|++|...+|+.|.+|.++++|+|+++|.+|++|++.+|.|||+.|||.+.+.
T Consensus         2 kI~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~~   74 (196)
T PRK10737          2 KVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDEN   74 (196)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence            3577899999999999999999999888999999999999999999999999999999999999999987653

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=1.9e-12  Score=115.02  Aligned_cols=74  Identities=16%  Similarity=0.113  Sum_probs=69.3

Q ss_pred             CCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCC
Q 008788          168 TPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPV  241 (553)
Q Consensus       168 ~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~  241 (553)
                      .++.||.|++||++++.||++|++|.. ..|+.|.+|.+++++||+++|.+|.+|++.++.|||+.|||.+++..
T Consensus         2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~~l   76 (174)
T COG1047           2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDPDL   76 (174)
T ss_pred             cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCChHH
Confidence            467899999999999999999999987 89999999999999999999999999999999999999999886643

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.30  E-value=3e-12  Score=129.48  Aligned_cols=122  Identities=30%  Similarity=0.452  Sum_probs=113.0

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .|+.+++++|.+|+.+.|+.|+..|.+||+    ++|..           +.++.|+|++++|.+.|..|+.++.+|+++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~----ldpnc-----------a~~~anRa~a~lK~e~~~~Al~Da~kaie~   67 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIE----LDPNC-----------AIYFANRALAHLKVESFGGALHDALKAIEL   67 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHh----cCCcc-----------eeeechhhhhheeechhhhHHHHHHhhhhc
Confidence            467889999999999999999999999999    67755           668899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKV  534 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~  534 (553)
                      +|...|+|+|+|.+++.+++|.+|+.+|+...++.|+. ..+.+.+..|.+...+++.
T Consensus        68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd-~~~~r~~~Ec~~~vs~~~f  124 (476)
T KOG0376|consen   68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPND-PDATRKIDECNKIVSEEKF  124 (476)
T ss_pred             CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCc-HHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999985 6799999999988876543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.28  E-value=7.7e-11  Score=103.81  Aligned_cols=114  Identities=18%  Similarity=0.346  Sum_probs=101.0

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +......|..+++.|++.+|+..|++++.    ..|.+           ..++.++|.|+++++++.+|+..+++++..+
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAA----YDPYN-----------SRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45577899999999999999999999988    66766           5789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~  527 (553)
                      |.++..++.+|.++..+|++++|+..|+++++++|++. ......+.+..
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~  130 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENP-EYSELKERAEA  130 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-hHHHHHHHHHH
Confidence            99999999999999999999999999999999999873 34444444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.27  E-value=1.1e-10  Score=102.98  Aligned_cols=100  Identities=9%  Similarity=0.096  Sum_probs=94.2

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      ..+.+...|..++..|++++|...|+-.+.    .+|.+           ...|+|||.|+..+++|.+|+..|.+|+.+
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~----~Dp~~-----------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L   98 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI----YDAWS-----------FDYWFRLGECCQAQKHWGEAIYAYGRAAQI   98 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            456788999999999999999999998888    67776           679999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~  511 (553)
                      +|+++.++++.|.|++.+|+.+.|++.|+.|+.+-
T Consensus        99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363         99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999886

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.20  E-value=6.4e-11  Score=91.34  Aligned_cols=66  Identities=32%  Similarity=0.605  Sum_probs=64.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDK  512 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg-~~~~A~~~l~~al~l~P  512 (553)
                      +.+|.++|.+++.+++|++|+.+++++++++|+++.+|+++|.|+..+| ++++|+++|++|++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            5689999999999999999999999999999999999999999999999 79999999999999998

...

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.15  E-value=9.1e-10  Score=103.60  Aligned_cols=103  Identities=15%  Similarity=0.250  Sum_probs=95.0

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHH-HHcCC--HHHHHHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL-LKLGE--CRKSIEACNKVL  474 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~-~kl~~--~~~A~~~~~~al  474 (553)
                      ++.+...|..+...|+++.|+..|++|++    +.|.+           ..+++++|.|+ ...++  +.+|+..+++++
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~----l~P~~-----------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al  137 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQ----LRGEN-----------AELYAALATVLYYQAGQHMTPQTREMIDKAL  137 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            55678899999999999999999999999    78877           67899999985 67787  599999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       475 ~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      +.+|+++.+++.+|.+++.+|+|++|+..++++++++|.+.
T Consensus       138 ~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        138 ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            99999999999999999999999999999999999999864

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.14  E-value=1.1e-09  Score=110.10  Aligned_cols=104  Identities=22%  Similarity=0.240  Sum_probs=98.2

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+.++|..+...|++.+|+..|++|++    .+|.+           ..+|+++|.++..+++|++|+..+++++++
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l  127 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALA----LRPDM-----------ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL  127 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            466688999999999999999999999999    78876           679999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      +|++..+|+++|.++...|++++|+++|+++++++|++.
T Consensus       128 ~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        128 DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999999999999999873

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.00  E-value=7.4e-09  Score=95.38  Aligned_cols=116  Identities=21%  Similarity=0.318  Sum_probs=97.7

Q ss_pred             HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (553)
Q Consensus       394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (553)
                      ....+..+...|..++..|++++|+..|++|++    ..+...+        ...++.++|.++.++|+|++|+.++.++
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a   98 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALK----LEEDPND--------RSYILYNMGIIYASNGEHDKALEYYHQA   98 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----Hhhccch--------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            445677889999999999999999999999998    3332211        1468899999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCChHHHHHH
Q 008788          474 LDANPAHVKGLYRRGMAYMALGE--------------FEEAQRDFEMMMKVDKSSEPDATAA  521 (553)
Q Consensus       474 l~~dp~n~ka~~r~g~a~~~lg~--------------~~~A~~~l~~al~l~P~~~~~~~~~  521 (553)
                      +.++|.+..+++.+|.++..+++              +++|++.+++++.++|++-.++...
T Consensus        99 l~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~  160 (172)
T PRK02603         99 LELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNW  160 (172)
T ss_pred             HHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHH
Confidence            99999999999999999999988              6888899999999999864333333

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.99  E-value=6.5e-09  Score=115.43  Aligned_cols=103  Identities=25%  Similarity=0.324  Sum_probs=73.1

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..++..|++++|+..|++|+.    .+|..           ..+|+++|.+++.++++++|+.++++++++
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~----l~P~~-----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~  394 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIE----LDPRV-----------TQSYIKRASMNLELGDPDKAEEDFDKALKL  394 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            345567788888889999999999999988    56654           345666666666666666666666666666


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      +|+++.+|+.+|.++..+|+|++|+.+|+++++++|++
T Consensus       395 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~  432 (615)
T TIGR00990       395 NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF  432 (615)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence            66666666666666666666666666666666666664

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.98  E-value=7.9e-09  Score=88.34  Aligned_cols=105  Identities=19%  Similarity=0.261  Sum_probs=92.0

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp  478 (553)
                      +.+...|..+++.|+|.+|+..|.+++.    ..|.+.        ....+++++|.++++.++|.+|+..+.+++..+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p   70 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLK----KYPKST--------YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP   70 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcc--------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence            4566889999999999999999999998    444331        1145788999999999999999999999999998


Q ss_pred             CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          479 AH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       479 ~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      ++   ..+++.+|.++..++++++|+..|+++++..|++.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence            75   67899999999999999999999999999999973

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=4.2e-09  Score=106.38  Aligned_cols=117  Identities=25%  Similarity=0.312  Sum_probs=105.1

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..|..+.-+|..+|-.|++-.|...++++|+    ++|.+           ..+|..+|..|+..++..+-..++++|..
T Consensus       324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~----l~~~~-----------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~  388 (606)
T KOG0547|consen  324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIK----LDPAF-----------NSLYIKRAAAYADENQSEKMWKDFNKAED  388 (606)
T ss_pred             HHHHHHHHhhhhhhhcCCchhhhhhHHHHHh----cCccc-----------chHHHHHHHHHhhhhccHHHHHHHHHHHh
Confidence            4588899999999999999999999999999    67765           56799999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008788          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRR  530 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~  530 (553)
                      +||.|+..||.||+.++-|++|++|+++|++|++|+|+|   +...++.|-...+
T Consensus       389 ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~---~~~~iQl~~a~Yr  440 (606)
T KOG0547|consen  389 LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN---AYAYIQLCCALYR  440 (606)
T ss_pred             cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh---hHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999997   4555555555444

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.98  E-value=4.5e-10  Score=108.97  Aligned_cols=119  Identities=28%  Similarity=0.473  Sum_probs=107.6

Q ss_pred             ChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 008788          390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA  469 (553)
Q Consensus       390 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  469 (553)
                      ..++.++++...+..+...+..|.++.|+..|.+||.    ++|..           ..+|.+++.++++++++..|+++
T Consensus       106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~----lnp~~-----------a~l~~kr~sv~lkl~kp~~airD  170 (377)
T KOG1308|consen  106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIE----LNPPL-----------AILYAKRASVFLKLKKPNAAIRD  170 (377)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccc----cCCch-----------hhhcccccceeeeccCCchhhhh
Confidence            4678889999999999999999999999999999999    78876           67899999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       470 ~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      |+.|++++|+.++.|-.|+.|+..||+|++|..+|..|++++-+-  ++...|+.+
T Consensus       171 ~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE--~~~a~lKeV  224 (377)
T KOG1308|consen  171 CDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDE--ANSATLKEV  224 (377)
T ss_pred             hhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccH--HHHHHHHHh
Confidence            999999999999999999999999999999999999999998762  344444443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.96  E-value=5.2e-09  Score=108.23  Aligned_cols=113  Identities=23%  Similarity=0.308  Sum_probs=96.6

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .|..+-+.|..++.+|..+.|+..|++||+    +.|..           ..+|+|+|.++-..|+..+|.+++++||.+
T Consensus       285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~----~~P~F-----------~~Ay~NlanALkd~G~V~ea~~cYnkaL~l  349 (966)
T KOG4626|consen  285 HAVAHGNLACIYYEQGLLDLAIDTYKRALE----LQPNF-----------PDAYNNLANALKDKGSVTEAVDCYNKALRL  349 (966)
T ss_pred             chhhccceEEEEeccccHHHHHHHHHHHHh----cCCCc-----------hHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence            466777888889999999999999999999    77765           568999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      .|+.+.+++++|.++.+.+.+++|...|++|++..|... .+.+.|..+
T Consensus       350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a-aa~nNLa~i  397 (966)
T KOG4626|consen  350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA-AAHNNLASI  397 (966)
T ss_pred             CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh-hhhhhHHHH
Confidence            999999999999999999999999999999999999853 344444433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.96  E-value=2.3e-09  Score=103.73  Aligned_cols=132  Identities=21%  Similarity=0.350  Sum_probs=109.5

Q ss_pred             CCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 008788          388 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  467 (553)
Q Consensus       388 ~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~  467 (553)
                      ..++-.+++.+.+..+.+......++|.+++..+++.++    ..|..       ...+...+--++.|+..-+++-+||
T Consensus       259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk----~ep~~-------~~ir~~~~r~~c~C~~~d~~~~eAi  327 (504)
T KOG0624|consen  259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK----NEPEE-------TMIRYNGFRVLCTCYREDEQFGEAI  327 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----cCCcc-------cceeeeeeheeeecccccCCHHHHH
Confidence            345666777788888888899999999999999999888    45432       1112334556789999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 008788          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRK  531 (553)
Q Consensus       468 ~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~  531 (553)
                      +.|+++|+++|+++.+|..||.||+.-.+|+.|+.+|++|++++++|. .++.-+.+.++..++
T Consensus       328 qqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~-~~reGle~Akrlkkq  390 (504)
T KOG0624|consen  328 QQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT-RAREGLERAKRLKKQ  390 (504)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999984 588777776665443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.94  E-value=2.5e-09  Score=85.90  Aligned_cols=83  Identities=29%  Similarity=0.514  Sum_probs=71.3

Q ss_pred             cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008788          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (553)
Q Consensus       411 ~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a  490 (553)
                      .++|+.|+..|+++++    ..|.+.         ....++++|.||+++++|++|+..+++ +..++.+...++.+|+|
T Consensus         2 ~~~y~~Ai~~~~k~~~----~~~~~~---------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~   67 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLE----LDPTNP---------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC   67 (84)
T ss_dssp             TT-HHHHHHHHHHHHH----HHCGTH---------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHH----HCCCCh---------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence            5899999999999999    344221         145788899999999999999999999 99999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHH
Q 008788          491 YMALGEFEEAQRDFEMM  507 (553)
Q Consensus       491 ~~~lg~~~~A~~~l~~a  507 (553)
                      +..+|+|++|+..|++|
T Consensus        68 ~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   68 LLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHTT-HHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHhcC
Confidence            99999999999999875

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.91  E-value=3.3e-08  Score=90.69  Aligned_cols=116  Identities=20%  Similarity=0.219  Sum_probs=94.2

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (553)
                      ...+..+...|..++..++|++|+..|++|+.    +.+...        ....+++|+|.++.+++++++|+..|.+|+
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----l~~~~~--------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al   99 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMR----LEIDPY--------DRSYILYNIGLIHTSNGEHTKALEYYFQAL   99 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----ccccch--------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34678888999999999999999999999998    333221        124589999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCChHHHHHHH
Q 008788          475 DANPAHVKGLYRRGMAYM-------ALGEFE-------EAQRDFEMMMKVDKSSEPDATAAL  522 (553)
Q Consensus       475 ~~dp~n~ka~~r~g~a~~-------~lg~~~-------~A~~~l~~al~l~P~~~~~~~~~l  522 (553)
                      .++|.+..+++.+|.++.       .+|+++       +|+..|++++.++|.+...+...+
T Consensus       100 ~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~  161 (168)
T CHL00033        100 ERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWL  161 (168)
T ss_pred             HhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            999999999999999999       777876       556666677888998654444333

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.91  E-value=4.8e-09  Score=108.45  Aligned_cols=109  Identities=23%  Similarity=0.362  Sum_probs=59.6

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp  478 (553)
                      ..+.+.||.+...|.++.|.+.|.+|++++    |           ..+.+++|||..|-..|++++|+.+++.||+++|
T Consensus       355 dam~NLgni~~E~~~~e~A~~ly~~al~v~----p-----------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P  419 (966)
T KOG4626|consen  355 DAMNNLGNIYREQGKIEEATRLYLKALEVF----P-----------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP  419 (966)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHhhC----h-----------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence            334444444444455555555555554421    1           1244556666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (553)
Q Consensus       479 ~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~  523 (553)
                      ..+.||.++|..|..+|+.+.|+.+|.+|+.++|.. +++...|.
T Consensus       420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~-AeAhsNLa  463 (966)
T KOG4626|consen  420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF-AEAHSNLA  463 (966)
T ss_pred             hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH-HHHHhhHH
Confidence            666666666666666666666666666666666553 33443333

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.91  E-value=4.8e-09  Score=79.74  Aligned_cols=64  Identities=22%  Similarity=0.416  Sum_probs=60.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       451 ~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      +.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            3678999999999999999999999999999999999999999999999999999999999986

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.91  E-value=1.1e-08  Score=99.11  Aligned_cols=105  Identities=22%  Similarity=0.437  Sum_probs=98.8

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+++..+.|+.++.+|+|..|+..|..|++    .+|.+           -.+++.+|.+|+.||+-+.|+.+++++|+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~-----------Y~aifrRaT~yLAmGksk~al~Dl~rVle  100 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNN-----------YQAIFRRATVYLAMGKSKAALQDLSRVLE  100 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchh-----------HHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence            4577888999999999999999999999999    77766           56889999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      +.|+..-|...||.+++..|+++.|.++|+.+|+-+|++.
T Consensus       101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~  140 (504)
T KOG0624|consen  101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG  140 (504)
T ss_pred             cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc
Confidence            9999999999999999999999999999999999999764

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.89  E-value=1.3e-08  Score=81.65  Aligned_cols=98  Identities=33%  Similarity=0.587  Sum_probs=87.9

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      +...|..++..|++.+|+..+.++++    ..|.+           ..++.++|.|+...+++++|+..+++++...|.+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   67 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALE----LDPDN-----------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN   67 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHh----cCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            45678888899999999999999998    55544           3578899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      ..+++.+|.++...++++.|...+.++++++|+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          68 AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            999999999999999999999999999998874

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.89  E-value=6.7e-08  Score=81.15  Aligned_cols=115  Identities=21%  Similarity=0.321  Sum_probs=98.3

Q ss_pred             hHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (553)
Q Consensus       393 e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  472 (553)
                      .-++....+-.+|..+-..|+.+.|++.|.+||.    +-|..           .++|+|+|+++.-.++.++|+++.++
T Consensus        38 ~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~----l~P~r-----------aSayNNRAQa~RLq~~~e~ALdDLn~  102 (175)
T KOG4555|consen   38 QAIKASRELELKAIALAEAGDLDGALELFGQALC----LAPER-----------ASAYNNRAQALRLQGDDEEALDDLNK  102 (175)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH----hcccc-----------hHhhccHHHHHHHcCChHHHHHHHHH
Confidence            4466777788899999999999999999999999    55554           78999999999999999999999999


Q ss_pred             HHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          473 VLDANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       473 al~~dp~n----~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      |+++--..    ..+|..||..|..+|+-+.|+.+|..|.+|-...   ++.+|-.+
T Consensus       103 AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F---Ar~QLV~l  156 (175)
T KOG4555|consen  103 ALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF---AREQLVEL  156 (175)
T ss_pred             HHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH---HHHHHHhc
Confidence            99996543    4579999999999999999999999999998653   55555444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.89  E-value=3.8e-09  Score=110.61  Aligned_cols=113  Identities=17%  Similarity=0.165  Sum_probs=67.2

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCCh-------------hHH-HHHhhh---------hhHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD-------------EEG-KVFVGK---------RNLLHLNVA  454 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~-------------ee~-~~~~~~---------~~~~~~nla  454 (553)
                      -+.+...||.+--+++++.|+++|++|+.    ++|...             +|. +.....         --.+|+-+|
T Consensus       421 PesWca~GNcfSLQkdh~~Aik~f~RAiQ----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG  496 (638)
T KOG1126|consen  421 PESWCALGNCFSLQKDHDTAIKCFKRAIQ----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG  496 (638)
T ss_pred             cHHHHHhcchhhhhhHHHHHHHHHHHhhc----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence            45688999999999999999999999999    666441             010 000000         012445555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ++|+|+++++.|.-++.+|++++|.|.-.+...|..+.++|+.++|+..|++|+.+||.|
T Consensus       497 ~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn  556 (638)
T KOG1126|consen  497 TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN  556 (638)
T ss_pred             hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence            555555555555555555555555555555555555555555555555555555555554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.89  E-value=3.3e-08  Score=113.29  Aligned_cols=110  Identities=10%  Similarity=0.082  Sum_probs=91.7

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~  479 (553)
                      .+...|..+.+.|++++|+..|++|+.    ..|.+           ..+++|+|.++..+|++++|+..+.+|++++|+
T Consensus       611 a~~~LA~~l~~lG~~deA~~~l~~AL~----l~Pd~-----------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~  675 (987)
T PRK09782        611 AYVARATIYRQRHNVPAAVSDLRAALE----LEPNN-----------SNYQAALGYALWDSGDIAQSREMLERAHKGLPD  675 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            445667777777888888888888777    66766           568899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      ++.+++.+|.++..+|++++|+..|++|++++|++ ..+......+
T Consensus       676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~-a~i~~~~g~~  720 (987)
T PRK09782        676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ-ALITPLTPEQ  720 (987)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-chhhhhhhHH
Confidence            99999999999999999999999999999999986 3455444333

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.84  E-value=6.5e-09  Score=80.00  Aligned_cols=66  Identities=29%  Similarity=0.499  Sum_probs=61.5

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDA  476 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~  476 (553)
                      +..+...|..++..++|++|+..|++|++    .+|.+           ..+++|+|.||.+++ ++.+|+.++++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~----~~p~~-----------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE----LDPNN-----------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHH----HSTTH-----------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            67788999999999999999999999999    67765           679999999999999 799999999999999


Q ss_pred             CC
Q 008788          477 NP  478 (553)
Q Consensus       477 dp  478 (553)
                      +|
T Consensus        68 ~P   69 (69)
T PF13414_consen   68 DP   69 (69)
T ss_dssp             ST
T ss_pred             Cc
Confidence            98

...

>PRK15331 chaperone protein SicA; Provisional

Probab=98.81  E-value=7.4e-08  Score=85.45  Aligned_cols=102  Identities=9%  Similarity=0.149  Sum_probs=91.6

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      ..+.....|-.+|..|+|++|...|+-...    .++.+           ...++.||.|+..+++|.+|+..+..|..+
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~----~d~~n-----------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l  100 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCI----YDFYN-----------PDYTMGLAAVCQLKKQFQKACDLYAVAFTL  100 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            456778899999999999999999986555    56666           567899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      +++++...|+.|.|++.+|+.+.|+..|..|+. .|.+
T Consensus       101 ~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~  137 (165)
T PRK15331        101 LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTED  137 (165)
T ss_pred             ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence            999999999999999999999999999999998 4553

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.79  E-value=4.8e-08  Score=87.08  Aligned_cols=93  Identities=15%  Similarity=0.185  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 008788          418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF  497 (553)
Q Consensus       418 ~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~  497 (553)
                      ...|++|++    ++|.              .+.++|.++..+|+|++|+.+|.+++.++|.+..+|+.+|.++..+|++
T Consensus        13 ~~~~~~al~----~~p~--------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~   74 (144)
T PRK15359         13 EDILKQLLS----VDPE--------------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY   74 (144)
T ss_pred             HHHHHHHHH----cCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence            345778887    5542              2567899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          498 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       498 ~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      ++|+..|++|+.++|++ ..+...+..+....
T Consensus        75 ~~A~~~y~~Al~l~p~~-~~a~~~lg~~l~~~  105 (144)
T PRK15359         75 TTAINFYGHALMLDASH-PEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHc
Confidence            99999999999999987 45666565554443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.78  E-value=1.7e-07  Score=90.91  Aligned_cols=107  Identities=21%  Similarity=0.318  Sum_probs=94.7

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..+++.|+|++|+..|++++.    ..|.+..        ...+++++|.+++++++|++|+..++++++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----~~p~~~~--------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~   99 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALES----RYPFSPY--------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRL   99 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCchh--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            366778999999999999999999999998    5665421        1357899999999999999999999999999


Q ss_pred             CCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCh
Q 008788          477 NPAHVK---GLYRRGMAYMAL--------GEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       477 dp~n~k---a~~r~g~a~~~l--------g~~~~A~~~l~~al~l~P~~~  515 (553)
                      +|++..   ++|.+|.++..+        +++++|++.|+++++.+|++.
T Consensus       100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  149 (235)
T TIGR03302       100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE  149 (235)
T ss_pred             CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence            998887   799999999987        889999999999999999974

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.77  E-value=1.4e-07  Score=88.68  Aligned_cols=119  Identities=11%  Similarity=0.079  Sum_probs=96.5

Q ss_pred             ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008788          410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  489 (553)
Q Consensus       410 ~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~  489 (553)
                      ..++.++++..|+++++    .+|.+           ...|.++|.+|+.++++++|+..+.+|++++|+++.+++.+|.
T Consensus        51 ~~~~~~~~i~~l~~~L~----~~P~~-----------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~  115 (198)
T PRK10370         51 SQQTPEAQLQALQDKIR----ANPQN-----------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT  115 (198)
T ss_pred             CchhHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            46788999999999999    78887           6799999999999999999999999999999999999999999


Q ss_pred             HH-HHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008788          490 AY-MALGE--FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLT  545 (553)
Q Consensus       490 a~-~~lg~--~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (553)
                      ++ ...|+  +++|++.|+++++++|++ ..+...+..........+ +-...|.++..
T Consensus       116 aL~~~~g~~~~~~A~~~l~~al~~dP~~-~~al~~LA~~~~~~g~~~-~Ai~~~~~aL~  172 (198)
T PRK10370        116 VLYYQAGQHMTPQTREMIDKALALDANE-VTALMLLASDAFMQADYA-QAIELWQKVLD  172 (198)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHH-HHHHHHHHHHh
Confidence            86 67787  599999999999999997 456666655544433322 23334444443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=6.5e-08  Score=97.39  Aligned_cols=125  Identities=17%  Similarity=0.206  Sum_probs=106.6

Q ss_pred             HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008788          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (553)
Q Consensus       402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~  481 (553)
                      .-.||-+--+++.+.|+..|++||+    ++|..           ..+|.-+|.-|+.|++-+.|+..+++|++++|.+.
T Consensus       334 CiIaNYYSlr~eHEKAv~YFkRALk----LNp~~-----------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy  398 (559)
T KOG1155|consen  334 CIIANYYSLRSEHEKAVMYFKRALK----LNPKY-----------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY  398 (559)
T ss_pred             eeehhHHHHHHhHHHHHHHHHHHHh----cCcch-----------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH
Confidence            3568888888999999999999999    78876           67899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008788          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGC  543 (553)
Q Consensus       482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~m  543 (553)
                      +|||-+|++|..++.+.-|+-+|++|+.+-|++ +.++..|..|-.++..... ..+.|++.
T Consensus       399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD-sRlw~aLG~CY~kl~~~~e-AiKCykra  458 (559)
T KOG1155|consen  399 RAWYGLGQAYEIMKMHFYALYYFQKALELKPND-SRLWVALGECYEKLNRLEE-AIKCYKRA  458 (559)
T ss_pred             HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHhccHHH-HHHHHHHH
Confidence            999999999999999999999999999999986 5588888888766543322 23455543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=6.7e-08  Score=99.53  Aligned_cols=116  Identities=16%  Similarity=0.167  Sum_probs=99.4

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      +.+.|...|..+.|.+|...+++++..+....+...        .-.+.++|+|..+.|++.|.+|+..+++||.+.|.+
T Consensus       417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~--------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~  488 (611)
T KOG1173|consen  417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI--------FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD  488 (611)
T ss_pred             hhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc--------chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence            568899999999999999999999976555443221        125789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      +.+|--.|.+|..+|+++.|++.|.+||-++|+|. -+...|+.+
T Consensus       489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~-~~~~lL~~a  532 (611)
T KOG1173|consen  489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI-FISELLKLA  532 (611)
T ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH-HHHHHHHHH
Confidence            99999999999999999999999999999999973 455555543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.74  E-value=1.9e-08  Score=103.84  Aligned_cols=98  Identities=27%  Similarity=0.399  Sum_probs=91.7

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      .-..|..++-.++|++|+.+|+.||.    .+|.+           ..+|+.||+.+..-.+..+|+..|++||++.|..
T Consensus       433 Q~~LGVLy~ls~efdraiDcf~~AL~----v~Pnd-----------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y  497 (579)
T KOG1125|consen  433 QSGLGVLYNLSGEFDRAVDCFEAALQ----VKPND-----------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGY  497 (579)
T ss_pred             HhhhHHHHhcchHHHHHHHHHHHHHh----cCCch-----------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence            33567888889999999999999999    88988           6799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      +.+.|++|.+++.+|.|.+|..+|-.||.+.+.
T Consensus       498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999775

>PRK12370 invasion protein regulator; Provisional

Probab=98.73  E-value=1.2e-07  Score=103.66  Aligned_cols=91  Identities=15%  Similarity=0.076  Sum_probs=85.5

Q ss_pred             ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008788          410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  489 (553)
Q Consensus       410 ~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~  489 (553)
                      ..+++.+|+..+++|++    ++|.+           ..++.++|.++..++++++|+..+++|++++|+++.+|+.+|.
T Consensus       316 ~~~~~~~A~~~~~~Al~----ldP~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  380 (553)
T PRK12370        316 KQNAMIKAKEHAIKATE----LDHNN-----------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGW  380 (553)
T ss_pred             cchHHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            55679999999999999    78877           5688999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          490 AYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       490 a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      ++..+|++++|+..|+++++++|.+.
T Consensus       381 ~l~~~G~~~eAi~~~~~Al~l~P~~~  406 (553)
T PRK12370        381 NLFMAGQLEEALQTINECLKLDPTRA  406 (553)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence            99999999999999999999999863

>PRK12370 invasion protein regulator; Provisional

Probab=98.73  E-value=1.5e-07  Score=102.90  Aligned_cols=110  Identities=9%  Similarity=0.087  Sum_probs=94.2

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~  479 (553)
                      .+...|..+...|++++|+..|++|++    ++|.+           ..+++++|.++..+|++++|+.+++++++++|.
T Consensus       340 a~~~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~  404 (553)
T PRK12370        340 ALGLLGLINTIHSEYIVGSLLFKQANL----LSPIS-----------ADIKYYYGWNLFMAGQLEEALQTINECLKLDPT  404 (553)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            455678888899999999999999999    78877           568999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Q 008788          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD-KSSEPDATAALSKL  525 (553)
Q Consensus       480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~-P~~~~~~~~~l~~l  525 (553)
                      ++.+++.++.+++.+|++++|++.++++++.. |++ +.+...+..+
T Consensus       405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~-~~~~~~la~~  450 (553)
T PRK12370        405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDN-PILLSMQVMF  450 (553)
T ss_pred             ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccC-HHHHHHHHHH
Confidence            99888888888999999999999999999886 544 4444444433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.73  E-value=1.2e-07  Score=104.88  Aligned_cols=112  Identities=7%  Similarity=0.061  Sum_probs=98.3

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .++.++..|....+.|++++|...|..++.    ..|++           ..++.|+|.++.+++++++|+..|+++|..
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~----~~Pd~-----------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~  149 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ----RFPDS-----------SEAFILMLRGVKRQQGIEAGRAEIELYFSG  149 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hCCCc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence            366788889999999999999999999999    78877           778999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~  524 (553)
                      +|+|+.+++.+|.++.++|+|++|++.|++++.-+|++ ..++-.+..
T Consensus       150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-~~~~~~~a~  196 (694)
T PRK15179        150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-ENGYVGWAQ  196 (694)
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-HHHHHHHHH
Confidence            99999999999999999999999999999999988875 334433333

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.72  E-value=4.1e-07  Score=86.68  Aligned_cols=112  Identities=19%  Similarity=0.293  Sum_probs=86.1

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      +...|..++..|++++|+..|.+++..    ...         ......+.++|.|+..++++.+|+..+.+++..+|.+
T Consensus       102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  168 (234)
T TIGR02521       102 LNNYGTFLCQQGKYEQAMQQFEQAIED----PLY---------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR  168 (234)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhc----ccc---------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            344566666667777777777776651    110         0124578899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      ..+++.+|.++...|++++|+..+++++++.|.+ ......+..+.
T Consensus       169 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~  213 (234)
T TIGR02521       169 PESLLELAELYYLRGQYKDARAYLERYQQTYNQT-AESLWLGIRIA  213 (234)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            9999999999999999999999999999998775 33433333333

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR00115 tig trigger factor

Probab=98.72  E-value=3.3e-08  Score=103.99  Aligned_cols=95  Identities=19%  Similarity=0.259  Sum_probs=80.2

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~  124 (553)
                      ++.||.|.++|+++. +|+.|+++.      ..++.|.+|.+.+++||+.+|.||++|++++|.+++...|+.....   
T Consensus       147 ~~~gD~V~v~~~~~~-dg~~~~~~~------~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~~---  216 (408)
T TIGR00115       147 AEKGDRVTIDFEGFI-DGEAFEGGK------AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEELA---  216 (408)
T ss_pred             cCCCCEEEEEEEEEE-CCEECcCCC------CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccCC---
Confidence            689999999999985 899888653      4689999999999999999999999999999999988889876543   


Q ss_pred             CCCCCCCCeEEEEEEEEeeeccccccCCCCe
Q 008788          125 PSTFPKDEELHFEIEMIDFAKAKIIADDFGV  155 (553)
Q Consensus       125 ~~~i~~~~~l~~~v~l~~~~~~~~~~~d~g~  155 (553)
                            |.++.|.|+|.++.....+.-|..+
T Consensus       217 ------gk~~~f~v~i~~I~~~~~peldDef  241 (408)
T TIGR00115       217 ------GKEATFKVTVKEVKEKELPELDDEF  241 (408)
T ss_pred             ------CCeEEEEEEEEEeccCCCCCCCHHH
Confidence                  8999999999999765443333333

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.71  E-value=3.1e-07  Score=85.04  Aligned_cols=105  Identities=25%  Similarity=0.336  Sum_probs=71.6

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+....+.|-.++..|++..|....++||+    .+|.+           ..+|.-+|..|.++|+.+.|-+.|++||.
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~----~DPs~-----------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls   97 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALE----HDPSY-----------YLAHLVRAHYYQKLGENDLADESYRKALS   97 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHcCChhhHHHHHHHHHh
Confidence            4566777889999999999999999999998    66665           34455555555555555555555555555


Q ss_pred             hCCCC------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          476 ANPAH------------------------------------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       476 ~dp~n------------------------------------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      ++|+|                                    ...|-+.|.|.++.|+++.|.++|+++|+++|++.
T Consensus        98 l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~  173 (250)
T COG3063          98 LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP  173 (250)
T ss_pred             cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence            55554                                    44555666666666666666677777777777653

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=3.2e-08  Score=103.13  Aligned_cols=95  Identities=22%  Similarity=0.336  Sum_probs=79.5

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~  124 (553)
                      ++.||.|+|+|.|+ .||..|.      |+....+.+.+|+|++||||+.+|.||++|++..|.|.....|....+.   
T Consensus       158 a~~gD~v~IDf~g~-iDg~~fe------gg~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~La---  227 (441)
T COG0544         158 AENGDRVTIDFEGS-VDGEEFE------GGKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEELA---  227 (441)
T ss_pred             cccCCEEEEEEEEE-EcCeecc------CccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHhC---
Confidence            68999999999997 5999888      4456789999999999999999999999999999877766777766654   


Q ss_pred             CCCCCCCCeEEEEEEEEeeeccccccCCCCe
Q 008788          125 PSTFPKDEELHFEIEMIDFAKAKIIADDFGV  155 (553)
Q Consensus       125 ~~~i~~~~~l~~~v~l~~~~~~~~~~~d~g~  155 (553)
                            |.+..|.|+|..+.....+.-|..+
T Consensus       228 ------GK~a~F~V~vkeVk~~elpEldDEf  252 (441)
T COG0544         228 ------GKEATFKVKVKEVKKRELPELDDEF  252 (441)
T ss_pred             ------CCceEEEEEEEEEeecCCCCCCHHH
Confidence                  8999999999999876554443333

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.68  E-value=1.1e-07  Score=73.93  Aligned_cols=66  Identities=24%  Similarity=0.443  Sum_probs=60.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 008788          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA  520 (553)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~  520 (553)
                      ...|+..++|.+|+..+++++.++|+++.+++.+|.++..+|+|++|+++|++++++.|++ .++..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~-~~~~~   67 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD-PDARA   67 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc-HHHHH
Confidence            4578899999999999999999999999999999999999999999999999999999986 33443

>PLN02789 farnesyltranstransferase

Probab=98.66  E-value=5.1e-07  Score=91.06  Aligned_cols=111  Identities=17%  Similarity=0.110  Sum_probs=90.8

Q ss_pred             HHHHhhhccccccC-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCH--HHHHHHHHHHHh
Q 008788          399 EKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC--RKSIEACNKVLD  475 (553)
Q Consensus       399 ~~~k~~G~~~~~~g-~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~--~~A~~~~~~al~  475 (553)
                      ..+..+|..+...+ ++.+|+..+.+++.    .+|.+           ..++++++.++.+++..  .+++.+++++|+
T Consensus        72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~----~npkn-----------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~  136 (320)
T PLN02789         72 TVWHFRRLCLEALDADLEEELDFAEDVAE----DNPKN-----------YQIWHHRRWLAEKLGPDAANKELEFTRKILS  136 (320)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHH----HCCcc-----------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence            34445666666666 57888888888887    66666           56899999999888874  788999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      +||.|..||+.|+.++..+++|++|++++.+++++||+|.. ++.....+
T Consensus       137 ~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s-AW~~R~~v  185 (320)
T PLN02789        137 LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS-AWNQRYFV  185 (320)
T ss_pred             hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh-HHHHHHHH
Confidence            99999999999999999999999999999999999999854 55544443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.66  E-value=6.8e-07  Score=85.12  Aligned_cols=113  Identities=17%  Similarity=0.318  Sum_probs=59.1

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhH-----------------HH------HHhhhhhHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE-----------------GK------VFVGKRNLLHLNVA  454 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee-----------------~~------~~~~~~~~~~~nla  454 (553)
                      +..+...|..++..|++++|+..|+++++    ..|.+..-                 .+      ........++.+++
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  106 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALE----HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG  106 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            44555666666777777777777777665    33332100                 00      00000123455555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          455 ACLLKLGECRKSIEACNKVLDAN--PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~d--p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      .++..++++++|+..+.+++...  +....+++.+|.++..+|++++|...|.++++.+|++
T Consensus       107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  168 (234)
T TIGR02521       107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR  168 (234)
T ss_pred             HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            55555555555555555555432  3344455555666666666666666666666665554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.66  E-value=4.1e-07  Score=104.41  Aligned_cols=101  Identities=16%  Similarity=0.180  Sum_probs=83.6

Q ss_pred             cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008788          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (553)
Q Consensus       411 ~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a  490 (553)
                      .|++++|+..|++|++    ..|.            ..++.|+|.++.++|++++|+..+.++++++|+++.+++.+|.+
T Consensus       589 ~Gr~~eAl~~~~~AL~----l~P~------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~a  652 (987)
T PRK09782        589 PGQPELALNDLTRSLN----IAPS------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA  652 (987)
T ss_pred             CCCHHHHHHHHHHHHH----hCCC------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3666666666666665    3441            35789999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          491 YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       491 ~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      +..+|++++|++.|++|++++|++ ..+...+..+...
T Consensus       653 L~~~G~~eeAi~~l~~AL~l~P~~-~~a~~nLA~al~~  689 (987)
T PRK09782        653 LWDSGDIAQSREMLERAHKGLPDD-PALIRQLAYVNQR  689 (987)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence            999999999999999999999987 4566555555444

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.66  E-value=4.6e-07  Score=91.05  Aligned_cols=94  Identities=19%  Similarity=0.271  Sum_probs=81.9

Q ss_pred             cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008788          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (553)
Q Consensus       411 ~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a  490 (553)
                      ..+.+.++..+.++|.    ..+.+++       .....|+++|.++..+|++.+|+..++++++++|+++.+|+.+|.+
T Consensus        39 ~~~~e~~i~~~~~~l~----~~~~~~~-------~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  107 (296)
T PRK11189         39 TLQQEVILARLNQILA----SRDLTDE-------ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIY  107 (296)
T ss_pred             chHHHHHHHHHHHHHc----cccCCcH-------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3567889999999886    2232211       2356899999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          491 YMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       491 ~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      +..+|++++|++.|+++++++|++.
T Consensus       108 ~~~~g~~~~A~~~~~~Al~l~P~~~  132 (296)
T PRK11189        108 LTQAGNFDAAYEAFDSVLELDPTYN  132 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999974

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.65  E-value=4.3e-07  Score=100.44  Aligned_cols=117  Identities=12%  Similarity=0.098  Sum_probs=101.5

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+......+..+++.+++++|+..+++++.    ..|++           ...++++|.|+.++|+|++|+..|++++..
T Consensus       119 ~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~-----------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~  183 (694)
T PRK15179        119 SSEAFILMLRGVKRQQGIEAGRAEIELYFS----GGSSS-----------AREILLEAKSWDEIGQSEQADACFERLSRQ  183 (694)
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHhh----cCCCC-----------HHHHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence            466677999999999999999999999999    78877           678999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      +|++++++..+|.++..+|+.++|...|++|+.+...-.....+.+.++.+.
T Consensus       184 ~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  235 (694)
T PRK15179        184 HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNAD  235 (694)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998654322233444444443

>PRK01490 tig trigger factor; Provisional

Probab=98.64  E-value=7.8e-08  Score=101.98  Aligned_cols=90  Identities=19%  Similarity=0.309  Sum_probs=77.9

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~  124 (553)
                      ++.||.|+++|+++. ||+.|+++.      ..++.|.+|.+.+++||+.+|.||++|+++.|.++....|+.....   
T Consensus       158 ~~~gD~V~vd~~~~~-~g~~~~~~~------~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~la---  227 (435)
T PRK01490        158 AENGDRVTIDFVGSI-DGEEFEGGK------AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDLA---  227 (435)
T ss_pred             CCCCCEEEEEEEEEE-CCEECcCCC------CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccCC---
Confidence            689999999999996 898887553      4689999999999999999999999999999999988888766543   


Q ss_pred             CCCCCCCCeEEEEEEEEeeecccccc
Q 008788          125 PSTFPKDEELHFEIEMIDFAKAKIIA  150 (553)
Q Consensus       125 ~~~i~~~~~l~~~v~l~~~~~~~~~~  150 (553)
                            |.++.|.|+|.++.....+.
T Consensus       228 ------gk~~~f~v~v~~V~~~~~pe  247 (435)
T PRK01490        228 ------GKEATFKVTVKEVKEKELPE  247 (435)
T ss_pred             ------CCeEEEEEEEEEeccCCCCC
Confidence                  89999999999997654433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.64  E-value=3.9e-07  Score=101.62  Aligned_cols=106  Identities=18%  Similarity=0.177  Sum_probs=74.9

Q ss_pred             hhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCC
Q 008788          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK----SIEACNKVLDANPA  479 (553)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~----A~~~~~~al~~dp~  479 (553)
                      .+..++..|++++|+..|++++.    ..|.+           ..+++++|.++..+|++.+    |+..|+++++++|+
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~----~~p~~-----------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~  282 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALA----RGLDG-----------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD  282 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence            35566778888888888888887    55554           4566777777777777764    67777777777777


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      ++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~-~~a~~~La~~  327 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL-PYVRAMYARA  327 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence            77777777777777777777777777777777775 3344444433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.63  E-value=3.7e-07  Score=80.16  Aligned_cols=94  Identities=13%  Similarity=0.155  Sum_probs=80.6

Q ss_pred             HHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 008788          420 KYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEE  499 (553)
Q Consensus       420 ~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~  499 (553)
                      .|++++.    .+|.+           .....++|.++++.+++.+|+..+.+++..+|.+..+++++|.++..++++++
T Consensus         5 ~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~   69 (135)
T TIGR02552         5 TLKDLLG----LDSEQ-----------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEE   69 (135)
T ss_pred             hHHHHHc----CChhh-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            4677777    66655           45788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          500 AQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       500 A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      |+..|+++++++|++ ......+..+....
T Consensus        70 A~~~~~~~~~~~p~~-~~~~~~la~~~~~~   98 (135)
T TIGR02552        70 AIDAYALAAALDPDD-PRPYFHAAECLLAL   98 (135)
T ss_pred             HHHHHHHHHhcCCCC-hHHHHHHHHHHHHc
Confidence            999999999999986 44655555554444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.62  E-value=8.2e-07  Score=86.97  Aligned_cols=104  Identities=10%  Similarity=0.141  Sum_probs=88.6

Q ss_pred             HHHhhhccc-cccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788          400 KIRVTGNRL-FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (553)
Q Consensus       400 ~~k~~G~~~-~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp  478 (553)
                      .....+..+ ++.|+|.+|+..|++.++    ..|.+.        ....+++-+|.+|+..++|++|+..+.+++...|
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~----~yP~s~--------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP  211 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVK----KYPDST--------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP  211 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            334555555 567999999999999999    566542        1245789999999999999999999999999988


Q ss_pred             C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          479 A---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       479 ~---n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      +   .+.|+|.+|.++..+|+++.|+..|+++++..|++.
T Consensus       212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            7   477899999999999999999999999999999974

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.61  E-value=1.2e-07  Score=72.60  Aligned_cols=67  Identities=28%  Similarity=0.489  Sum_probs=59.6

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008788          457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (553)
Q Consensus       457 ~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~  524 (553)
                      +++.|+|.+|+..+++++..+|+|..+++.+|.|+...|++++|+..+++++..+|++ +.++..+.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~-~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN-PEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH-HHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH-HHHHHHHhc
Confidence            3578999999999999999999999999999999999999999999999999999985 556655543

...

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=1e-06  Score=89.01  Aligned_cols=130  Identities=15%  Similarity=0.203  Sum_probs=106.8

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      ...+--.|.++...++-..|+..|++|++    ++|.|           ..+|+-+|++|--|+..-=|+-++++|+.+.
T Consensus       364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvd----i~p~D-----------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k  428 (559)
T KOG1155|consen  364 LSAWTLMGHEYVEMKNTHAAIESYRRAVD----INPRD-----------YRAWYGLGQAYEIMKMHFYALYYFQKALELK  428 (559)
T ss_pred             hHHHHHhhHHHHHhcccHHHHHHHHHHHh----cCchh-----------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence            44566789999999999999999999999    88877           6789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCL  544 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf  544 (553)
                      |++...|-.+|.||.++++.++|+.+|++|+.+.-.+ ..+...|.++-+++...++ ..+.|.+..
T Consensus       429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte-~~~l~~LakLye~l~d~~e-Aa~~yek~v  493 (559)
T KOG1155|consen  429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE-GSALVRLAKLYEELKDLNE-AAQYYEKYV  493 (559)
T ss_pred             CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHhHHH-HHHHHHHHH
Confidence            9999999999999999999999999999999987654 3455566666666654333 334444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.59  E-value=1.8e-06  Score=83.86  Aligned_cols=124  Identities=25%  Similarity=0.335  Sum_probs=99.8

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..++..|+|.+|+..|++.+.    ..|....        ...+.+++|.+|+++++|.+|+..+++.++.+
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP~s~~--------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDN----RYPFGPY--------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCChH--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            44566788899999999999999999988    6665521        24567899999999999999999999999999


Q ss_pred             CCCH---HHHHHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHH
Q 008788          478 PAHV---KGLYRRGMAYMALGE------------------FEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRRKLK  533 (553)
Q Consensus       478 p~n~---ka~~r~g~a~~~lg~------------------~~~A~~~l~~al~l~P~~~--~~~~~~l~~l~~~~~~~~  533 (553)
                      |+++   -|+|.+|.++..++.                  ...|+..|++.++.-|++.  .+++..+..|+.++.+.+
T Consensus       100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e  178 (243)
T PRK10866        100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE  178 (243)
T ss_pred             cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence            8775   479999999876651                  2578899999999999864  456666777777766544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.58  E-value=9.6e-07  Score=83.49  Aligned_cols=114  Identities=19%  Similarity=0.230  Sum_probs=100.5

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      ...+...|..+++.|+|.+|+..+++|..    ..|.+           ..+|+-+|.||.++|+++.|...+.+++++.
T Consensus       100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~----l~p~d-----------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~  164 (257)
T COG5010         100 RELLAAQGKNQIRNGNFGEAVSVLRKAAR----LAPTD-----------WEAWNLLGAALDQLGRFDEARRAYRQALELA  164 (257)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHhc----cCCCC-----------hhhhhHHHHHHHHccChhHHHHHHHHHHHhc
Confidence            34455699999999999999999999999    78877           5789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~  527 (553)
                      |+++.++-++|..+.-.|+++.|...+..+...-+.+ ..+...|..+..
T Consensus       165 ~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad-~~v~~NLAl~~~  213 (257)
T COG5010         165 PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD-SRVRQNLALVVG  213 (257)
T ss_pred             cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHh
Confidence            9999999999999999999999999999998777755 346665655543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.56  E-value=2.2e-07  Score=94.82  Aligned_cols=109  Identities=24%  Similarity=0.283  Sum_probs=97.4

Q ss_pred             hhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc---CCHHHHH
Q 008788          391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL---GECRKSI  467 (553)
Q Consensus       391 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl---~~~~~A~  467 (553)
                      ..+..+.++..+++||..|..+....|+..|.+|+.    ..|..           +.+|.|+|.+++|.   ++-..|+
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q----~~~~~-----------~~~l~nraa~lmkRkW~~d~~~Al  431 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQ----YVPDA-----------IYLLENRAAALMKRKWRGDSYLAL  431 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhh----hccch-----------hHHHHhHHHHHHhhhccccHHHHH
Confidence            456778899999999999999999999999999998    34433           67999999999986   4788999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       468 ~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      .+|..|+++||...||+|+++.|+..++++.+|+.+...+....|.+
T Consensus       432 rDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  432 RDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             HhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence            99999999999999999999999999999999999988887778864

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.56  E-value=9.6e-07  Score=98.45  Aligned_cols=101  Identities=17%  Similarity=0.231  Sum_probs=84.2

Q ss_pred             HHHHhhhccccccCCHHH----HHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          399 EKIRVTGNRLFKEGKFEL----AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~----A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (553)
                      ..+...|..++..|++.+    |+..|++|+.    ..|.+           ..++.++|.++.++|++++|+..+++++
T Consensus       247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~l~~~g~~~eA~~~l~~al  311 (656)
T PRK15174        247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ----FNSDN-----------VRIVTLYADALIRTGQNEKAIPLLQQSL  311 (656)
T ss_pred             HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344567888888888885    7888888888    67765           5678888888888888888888888888


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       475 ~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      +++|+++.+++.+|.++..+|++++|++.|++++..+|++
T Consensus       312 ~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        312 ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT  351 (656)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            8888888888888888888888888888888888888875

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.56  E-value=7.1e-07  Score=93.88  Aligned_cols=121  Identities=19%  Similarity=0.317  Sum_probs=106.0

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .=.++.-.|..+.++++|+.|.-.|++|++    ++|.+           ..+..-++..+.++++.++|+..+++|+.+
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~----INP~n-----------svi~~~~g~~~~~~k~~d~AL~~~~~A~~l  552 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE----INPSN-----------SVILCHIGRIQHQLKRKDKALQLYEKAIHL  552 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhc----CCccc-----------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence            345677889999999999999999999999    88877           556677889999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLK  533 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~  533 (553)
                      ||.|+-+.|.+|..++.+++|++|+..|+...++-|++ ..+..++.++-+++....
T Consensus       553 d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e-s~v~~llgki~k~~~~~~  608 (638)
T KOG1126|consen  553 DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE-SSVFALLGKIYKRLGNTD  608 (638)
T ss_pred             CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHccch
Confidence            99999999999999999999999999999999999996 557777777766665443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.55  E-value=3e-07  Score=94.08  Aligned_cols=64  Identities=14%  Similarity=0.197  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG---LYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka---~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      ...|+|+|.+|.++++|++|+..|++||+++|++..+   ||++|.||..+|++++|+++|++|+++
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            6789999999999999999999999999999999865   999999999999999999999999998

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.54  E-value=1.4e-06  Score=91.04  Aligned_cols=68  Identities=21%  Similarity=0.206  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      .++.++|.++++.+++++|+..++++++.+|++..+++.+|.++...|++++|++.|+++++.+|.+.
T Consensus       181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  248 (389)
T PRK11788        181 HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL  248 (389)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence            35677888888888888888888888888888888888888888888888888888888888888753

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.53  E-value=2.7e-06  Score=80.45  Aligned_cols=125  Identities=23%  Similarity=0.348  Sum_probs=97.0

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..++..|+|.+|+..|++.+.    ..|.+.        ....+.+.+|.++++.++|.+|+..+++.++..
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~----~~P~s~--------~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y   72 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLID----RYPNSP--------YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY   72 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHH----H-TTST--------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCCCh--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            66788999999999999999999999988    445432        224678899999999999999999999999999


Q ss_pred             CCCHH---HHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHH
Q 008788          478 PAHVK---GLYRRGMAYMALG-----------EFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRRKLKV  534 (553)
Q Consensus       478 p~n~k---a~~r~g~a~~~lg-----------~~~~A~~~l~~al~l~P~~~--~~~~~~l~~l~~~~~~~~~  534 (553)
                      |++..   |+|.+|.+++.+.           ...+|+..|+..++.-|++.  .+++..+..|+.++.+.+=
T Consensus        73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~  145 (203)
T PF13525_consen   73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL  145 (203)
T ss_dssp             TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence            98754   8999999987764           24589999999999999864  3566667777776665543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.53  E-value=1.2e-06  Score=81.16  Aligned_cols=105  Identities=20%  Similarity=0.284  Sum_probs=91.8

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .++.+.+.|-.++.+|+|++|...|.+|+.     .|.-.+        ....+.|++.|.+++|++..|..++.++|++
T Consensus       102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-----~P~Y~~--------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~  168 (250)
T COG3063         102 NGDVLNNYGAFLCAQGRPEEAMQQFERALA-----DPAYGE--------PSDTLENLGLCALKAGQFDQAEEYLKRALEL  168 (250)
T ss_pred             ccchhhhhhHHHHhCCChHHHHHHHHHHHh-----CCCCCC--------cchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence            356678899999999999999999999998     332211        2457899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ||+++-++..++.-++..|+|-.|+..+++...--+.+
T Consensus       169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~  206 (250)
T COG3063         169 DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQ  206 (250)
T ss_pred             CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccccc
Confidence            99999999999999999999999999999988876654

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.52  E-value=5.3e-07  Score=96.10  Aligned_cols=103  Identities=23%  Similarity=0.328  Sum_probs=95.5

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHH--HHHHHHh
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE--ACNKVLD  475 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~--~~~~al~  475 (553)
                      +..++..|..+-.+|++.+|...|..|+.    ++|++           ..+...+|.|+++.|+..-|..  ....|++
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~----ldP~h-----------v~s~~Ala~~lle~G~~~la~~~~~L~dalr  748 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALA----LDPDH-----------VPSMTALAELLLELGSPRLAEKRSLLSDALR  748 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHh----cCCCC-----------cHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence            45578889999999999999999999999    89988           7788899999999998888888  9999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      +||.|.+|||.+|.++..+|+.+.|.++|..|++|++++.
T Consensus       749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            9999999999999999999999999999999999999863

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.52  E-value=1.6e-06  Score=75.31  Aligned_cols=106  Identities=24%  Similarity=0.413  Sum_probs=90.0

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+.+.|...++.|+|.+|++.++....    ..|...        ....+.+.++-+|++.++|.+|+..+++-++++
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~----ryP~g~--------ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh   77 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDT----RYPFGE--------YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH   77 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCCc--------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            45567888889999999999998887655    555441        124578899999999999999999999999999


Q ss_pred             CCCHH---HHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCh
Q 008788          478 PAHVK---GLYRRGMAYMALGE---------------FEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       478 p~n~k---a~~r~g~a~~~lg~---------------~~~A~~~l~~al~l~P~~~  515 (553)
                      |.+++   |+|++|.+++.+..               ...|..+|++.++.-|++.
T Consensus        78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence            98876   79999999999987               8899999999999999873

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.52  E-value=2.2e-07  Score=70.51  Aligned_cols=64  Identities=17%  Similarity=0.400  Sum_probs=57.3

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~  481 (553)
                      ..|..+++.|+|++|+..|+++++    ..|.+           ..+++.+|.|++.+|++++|+..++++++.+|+|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK----QDPDN-----------PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC----CSTTH-----------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            578889999999999999999999    67765           67999999999999999999999999999999885

>PLN02789 farnesyltranstransferase

Probab=98.51  E-value=2.1e-06  Score=86.60  Aligned_cols=121  Identities=14%  Similarity=0.098  Sum_probs=97.4

Q ss_pred             ccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHH
Q 008788          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDANPAHVKGLYR  486 (553)
Q Consensus       408 ~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~dp~n~ka~~r  486 (553)
                      +...+++.+|+..+.++|.    ++|.+           ..++++++.|+.+++ .+++++..+++++..+|.|..+|+.
T Consensus        47 l~~~e~serAL~lt~~aI~----lnP~~-----------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~  111 (320)
T PLN02789         47 YASDERSPRALDLTADVIR----LNPGN-----------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH  111 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHH----HCchh-----------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence            4456789999999999999    78877           679999999999998 6899999999999999999999999


Q ss_pred             HHHHHHHcCCH--HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008788          487 RGMAYMALGEF--EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLT  545 (553)
Q Consensus       487 ~g~a~~~lg~~--~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (553)
                      |+.++..+++.  ++++..+.++++++|.|. .++....-+-......+ ++-..+.++..
T Consensus       112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy-~AW~~R~w~l~~l~~~~-eeL~~~~~~I~  170 (320)
T PLN02789        112 RRWLAEKLGPDAANKELEFTRKILSLDAKNY-HAWSHRQWVLRTLGGWE-DELEYCHQLLE  170 (320)
T ss_pred             HHHHHHHcCchhhHHHHHHHHHHHHhCcccH-HHHHHHHHHHHHhhhHH-HHHHHHHHHHH
Confidence            99999999974  788999999999999974 46655555544443322 23344444443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.51  E-value=1.8e-07  Score=85.44  Aligned_cols=132  Identities=21%  Similarity=0.235  Sum_probs=108.3

Q ss_pred             CCCCCeEEEEEEEeeeecCCCCCCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhh
Q 008788          365 VPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG  444 (553)
Q Consensus       365 ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~  444 (553)
                      +|-..++.-+|-+..+.+.-....++.+++   |.-+.++|+.+-..|-+..|...+.+|+.    +.|.-         
T Consensus        35 ~~~qp~lqqEV~iarlsqlL~~~~l~~eeR---A~l~fERGvlYDSlGL~~LAR~DftQaLa----i~P~m---------   98 (297)
T COG4785          35 VPLQPTLQQEVILARMSQILASRALTDEER---AQLLFERGVLYDSLGLRALARNDFSQALA----IRPDM---------   98 (297)
T ss_pred             ccCCccHHHHHHHHHHHHHHHhccCChHHH---HHHHHHhcchhhhhhHHHHHhhhhhhhhh----cCCCc---------
Confidence            344444443433333333222234555554   77889999999999999999999999999    77765         


Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       445 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                        ..+++.+|..+...++|+.|.+.++.++++||.+--|+.+||.++.--|+|..|.+++.+-.+-||++
T Consensus        99 --~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D  166 (297)
T COG4785          99 --PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND  166 (297)
T ss_pred             --HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCC
Confidence              67899999999999999999999999999999999999999999999999999999999999999986

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.50  E-value=2e-06  Score=102.23  Aligned_cols=122  Identities=17%  Similarity=0.276  Sum_probs=96.6

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhH--H-HHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE--G-KVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee--~-~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (553)
                      +..+...|..+++.|++++|+..|++|++    ..|.+...  + ..+......++.+++.++++.+++++|+..+.+++
T Consensus       303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~----~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al  378 (1157)
T PRK11447        303 SEALGALGQAYSQQGDRARAVAQFEKALA----LDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR  378 (1157)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44566788889999999999999999998    55544211  1 11111122344577889999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008788          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (553)
Q Consensus       475 ~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~  524 (553)
                      +++|+++.+++.+|.++..+|++++|++.|+++++++|++. .+...+..
T Consensus       379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~-~a~~~L~~  427 (1157)
T PRK11447        379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT-NAVRGLAN  427 (1157)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHH
Confidence            99999999999999999999999999999999999999974 34444433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.50  E-value=7.8e-07  Score=85.64  Aligned_cols=77  Identities=22%  Similarity=0.338  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788          450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       450 ~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~  527 (553)
                      +-+-|.-+++.++|.+|+..|++||+++|.|+--|.+||.||.+||+|+.|+++++.|+++||+. ..++-.|-.+..
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~  160 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHH
Confidence            34567778899999999999999999999999999999999999999999999999999999985 334433433333

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.50  E-value=1.8e-06  Score=98.28  Aligned_cols=111  Identities=11%  Similarity=0.188  Sum_probs=98.0

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..+.+.|++.+|+..|++++.    ..|.+           ..++.+++.+++..+++.+|+..+.++++.+
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~  113 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALS----LEPQN-----------DDYQRGLILTLADAGQYDEALVKAKQLVSGA  113 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            33467788899999999999999999999    77876           4577899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      |+++. ++.+|.++...|++++|+..|+++++++|++. .+...+..+
T Consensus       114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~-~~~~~la~~  159 (765)
T PRK10049        114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ-QYPTEYVQA  159 (765)
T ss_pred             CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Confidence            99999 99999999999999999999999999999974 454444433

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=1.9e-06  Score=85.88  Aligned_cols=113  Identities=23%  Similarity=0.348  Sum_probs=97.1

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhh-hhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK-RNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~-~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      .+.+++-+|..++...+.+.|+..|+++|+    ++|+..+........ ....+-+.|.-.++.|.|..|-+.|..||.
T Consensus       202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~----ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~  277 (486)
T KOG0550|consen  202 NAEALYVRGLCLYYNDNADKAINHFQQALR----LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN  277 (486)
T ss_pred             hhHHHHhcccccccccchHHHHHHHhhhhc----cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence            477889999999999999999999999999    788765443222211 234567888889999999999999999999


Q ss_pred             hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          476 ANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       476 ~dp~n----~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      +||+|    ++.|++||.++.+||+..+|+.+.+.|++|||.
T Consensus       278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s  319 (486)
T KOG0550|consen  278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS  319 (486)
T ss_pred             CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence            99975    678999999999999999999999999999986

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.46  E-value=6.5e-07  Score=89.28  Aligned_cols=116  Identities=24%  Similarity=0.277  Sum_probs=93.9

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      ...+...|..+.+.|++++|+..|++|++    ..|.+           ..+..+++.+++.++++.++...+.......
T Consensus       146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~P~~-----------~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~  210 (280)
T PF13429_consen  146 ARFWLALAEIYEQLGDPDKALRDYRKALE----LDPDD-----------PDARNALAWLLIDMGDYDEAREALKRLLKAA  210 (280)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHH----H-TT------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence            44567888999999999999999999999    78887           4577788888999999999999998888888


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      |.++..+..+|.++..+|++++|+..|+++++.+|+| +.+...+..+-...
T Consensus       211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-~~~~~~~a~~l~~~  261 (280)
T PF13429_consen  211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-PLWLLAYADALEQA  261 (280)
T ss_dssp             HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT--
T ss_pred             cCHHHHHHHHHHHhccccccccccccccccccccccc-cccccccccccccc
Confidence            8899999999999999999999999999999999987 44655555544433

>TIGR00115 tig trigger factor

Probab=98.43  E-value=1.1e-06  Score=92.56  Aligned_cols=86  Identities=17%  Similarity=0.150  Sum_probs=72.9

Q ss_pred             CCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCce
Q 008788          168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE  247 (553)
Q Consensus       168 ~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~~  247 (553)
                      .++.||.|+++|+++. +|..++++. +.++.|.+|.+.+++||+++|.||++|+++.|.++....|+...    -++.+
T Consensus       146 ~~~~gD~V~v~~~~~~-dg~~~~~~~-~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~----~~gk~  219 (408)
T TIGR00115       146 AAEKGDRVTIDFEGFI-DGEAFEGGK-AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEE----LAGKE  219 (408)
T ss_pred             ccCCCCEEEEEEEEEE-CCEECcCCC-CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCccc----CCCCe
Confidence            5788999999999965 888877653 57899999999999999999999999999999998766665432    25789


Q ss_pred             EEEEEEEeeeee
Q 008788          248 VHFEVELVHLIQ  259 (553)
Q Consensus       248 l~~~v~l~~~~~  259 (553)
                      +.|.|+|+++.+
T Consensus       220 ~~f~v~i~~I~~  231 (408)
T TIGR00115       220 ATFKVTVKEVKE  231 (408)
T ss_pred             EEEEEEEEEecc
Confidence            999999999953

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.43  E-value=3.8e-06  Score=99.93  Aligned_cols=113  Identities=16%  Similarity=0.164  Sum_probs=93.2

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHH-------------------------------Hhhhhh
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV-------------------------------FVGKRN  447 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~-------------------------------~~~~~~  447 (553)
                      ..+...|..++..|++++|+..|++|++    .+|.+......                               ...+..
T Consensus       386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~----~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~  461 (1157)
T PRK11447        386 YAVLGLGDVAMARKDYAAAERYYQQALR----MDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN  461 (1157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence            3456788999999999999999999998    45554321100                               011123


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      ..+.++|.++...+++.+|+..++++++++|+++.+++++|.++..+|++++|+..|+++++++|++.
T Consensus       462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~  529 (1157)
T PRK11447        462 DRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP  529 (1157)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            45667899999999999999999999999999999999999999999999999999999999999873

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.43  E-value=2.9e-06  Score=76.14  Aligned_cols=98  Identities=30%  Similarity=0.343  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhCCCCHHH
Q 008788          414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG----------ECRKSIEACNKVLDANPAHVKG  483 (553)
Q Consensus       414 ~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~----------~~~~A~~~~~~al~~dp~n~ka  483 (553)
                      |+.|.+.|..+..    .+|.+           ...++|-|.+++.+.          .+++|+.-+++||.++|+...|
T Consensus         7 FE~ark~aea~y~----~nP~D-----------adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA   71 (186)
T PF06552_consen    7 FEHARKKAEAAYA----KNPLD-----------ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA   71 (186)
T ss_dssp             HHHHHHHHHHHHH----H-TT------------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHHHHHH----hCcHh-----------HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            6778888888777    67877           456667776666653          3678999999999999999999


Q ss_pred             HHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788          484 LYRRGMAYMALGE-----------FEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       484 ~~r~g~a~~~lg~-----------~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~  527 (553)
                      ++.+|.||..++.           |+.|..+|++|..++|+|. ..++.|....+
T Consensus        72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~~k  125 (186)
T PF06552_consen   72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEMAAK  125 (186)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHh
Confidence            9999999998776           7899999999999999984 46776766654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.42  E-value=5.6e-07  Score=70.96  Aligned_cols=65  Identities=25%  Similarity=0.409  Sum_probs=57.4

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDAN-------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d-------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      ...+++|+|.+|..+++|++|+.++++++++.       |.-+.+++++|.++..+|++++|++.+++|+++
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            36789999999999999999999999999772       223778999999999999999999999999876

...

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.41  E-value=3.6e-06  Score=96.93  Aligned_cols=104  Identities=24%  Similarity=0.393  Sum_probs=89.7

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..++..|++++|+..|+++++    ..|.+           ..+++.+|.+++..++|.+|+..+++++..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  188 (899)
T TIGR02917       124 AAELLALRGLAYLGLGQLELAQKSYEQALA----IDPRS-----------LYAKLGLAQLALAENRFDEARALIDEVLTA  188 (899)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------hhhHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            456677899999999999999999999998    56655           457788888888889999999999999888


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      +|.+..+++.+|.++...|++++|+..|+++++++|++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~  227 (899)
T TIGR02917       189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNP  227 (899)
T ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Confidence            888888999999999999999999999999998888763

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.40  E-value=6e-06  Score=75.64  Aligned_cols=111  Identities=13%  Similarity=0.127  Sum_probs=85.7

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH--  480 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n--  480 (553)
                      ...+.+|-...|..+...+...++    ....         .....+++++|.++..+++|++|+..+.+++.+.|+.  
T Consensus         4 ~~~~~~~~~~~~~~~~~~l~~~~~----~~~~---------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~   70 (168)
T CHL00033          4 SQRNDNFIDKTFTIVADILLRILP----TTSG---------EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD   70 (168)
T ss_pred             ccccccccccccccchhhhhHhcc----CCch---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh
Confidence            355677777777777777755443    2221         1236789999999999999999999999999997653  


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788          481 -VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       481 -~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~  527 (553)
                       +-+|+.+|.++..+|++++|++.|++|++++|.+. .....+..+..
T Consensus        71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~-~~~~~la~i~~  117 (168)
T CHL00033         71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP-QALNNMAVICH  117 (168)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHH
Confidence             45899999999999999999999999999999863 34444443333

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.39  E-value=4.9e-06  Score=95.82  Aligned_cols=98  Identities=15%  Similarity=0.313  Sum_probs=74.8

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      +...|..+++.|+|++|+..|++++.    ..|.+            ..+.+++.++.++|++++|+..+.++++.+|++
T Consensus       706 ~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~  769 (899)
T TIGR02917       706 FELEGDLYLRQKDYPAAIQAYRKALK----RAPSS------------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND  769 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCc------------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            44577888889999999999999888    44433            345667777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ..+++.+|.++..+|++++|+..|+++++.+|++
T Consensus       770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  803 (899)
T TIGR02917       770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN  803 (899)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence            7777777777777777777777777777777765

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.38  E-value=7.3e-06  Score=85.59  Aligned_cols=99  Identities=20%  Similarity=0.231  Sum_probs=63.0

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      +...|..+++.+++++|+..|+++++    ..|.+           ..+++.+|.++.++|++++|+..+.+++..+|.+
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALA----ADPQC-----------VRASILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHh----HCcCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            44566667777888888888888777    33333           3355566666666666666666666666666654


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          481 -VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       481 -~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                       ..++..++.+|..+|++++|+..++++++++|++
T Consensus       248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~  282 (389)
T PRK11788        248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA  282 (389)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence             2345566666666666666666666666666654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.38  E-value=6.5e-06  Score=79.72  Aligned_cols=104  Identities=14%  Similarity=0.210  Sum_probs=87.6

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc--------CCHHHHHHHH
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--------GECRKSIEAC  470 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl--------~~~~~A~~~~  470 (553)
                      ..+...|..+++.+++++|+..|+++++    ..|.+..        ...+++++|.|+..+        +++.+|+..+
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~~~--------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~  138 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIR----LHPNHPD--------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF  138 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCCc--------hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence            3456789999999999999999999999    5665421        123678899999876        7899999999


Q ss_pred             HHHHhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          471 NKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       471 ~~al~~dp~n~ka~-----------------~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      +++++.+|++..++                 +.+|.+++..|++++|+..|+++++..|++
T Consensus       139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  199 (235)
T TIGR03302       139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT  199 (235)
T ss_pred             HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence            99999999986542                 467889999999999999999999998875

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.37  E-value=8.3e-07  Score=67.88  Aligned_cols=67  Identities=27%  Similarity=0.397  Sum_probs=58.8

Q ss_pred             ccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008788          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR  487 (553)
Q Consensus       408 ~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~  487 (553)
                      +++.|+|++|+..|++++.    ..|.+           ..+++++|.||++.|++++|...+.+++..+|+++..+.-+
T Consensus         1 ll~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQ----RNPDN-----------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHH----HTTTS-----------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            3678999999999999999    78877           67889999999999999999999999999999987777666


Q ss_pred             HH
Q 008788          488 GM  489 (553)
Q Consensus       488 g~  489 (553)
                      ++
T Consensus        66 a~   67 (68)
T PF14559_consen   66 AQ   67 (68)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

...

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.36  E-value=5.5e-06  Score=94.28  Aligned_cols=102  Identities=11%  Similarity=0.078  Sum_probs=94.2

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp  478 (553)
                      ......+..+...|++++|+..+++++.    ..|.+           ..+++++|.++..++++.+|+..+++++.++|
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~----~~P~n-----------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P  424 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAY----NAPGN-----------QGLRIDYASVLQARGWPRAAENELKKAEVLEP  424 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence            3445677788899999999999999999    67877           56899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       479 ~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      ++..+++.+|.++..+++|++|...++++++.+|++.
T Consensus       425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~  461 (765)
T PRK10049        425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP  461 (765)
T ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999999999999973

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.35  E-value=4.6e-06  Score=73.85  Aligned_cols=80  Identities=13%  Similarity=0.021  Sum_probs=69.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      ....+.+|.-+...|++++|...++.+..+||.|+..||.+|.|+..+|+|++|+..|.+|+.++|++. .....+..|.
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp-~~~~~ag~c~  113 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP-QAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-hHHHHHHHHH
Confidence            445677888889999999999999999999999999999999999999999999999999999999864 3444444443


Q ss_pred             H
Q 008788          527 K  527 (553)
Q Consensus       527 ~  527 (553)
                      .
T Consensus       114 L  114 (157)
T PRK15363        114 L  114 (157)
T ss_pred             H
Confidence            3

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.35  E-value=7.3e-06  Score=65.31  Aligned_cols=80  Identities=28%  Similarity=0.444  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      +++++|.++...+++.+|+..+.++++..|.+..+++.+|.++...+++++|+..|++++++.|.+. .+...+..+...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~   80 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA-KAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-hHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999999999999999864 344444444443


Q ss_pred             H
Q 008788          529 R  529 (553)
Q Consensus       529 ~  529 (553)
                      .
T Consensus        81 ~   81 (100)
T cd00189          81 L   81 (100)
T ss_pred             H
Confidence            3

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.34  E-value=1.1e-05  Score=87.55  Aligned_cols=113  Identities=21%  Similarity=0.333  Sum_probs=73.3

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHH--------------H---------HhhhhhHHHHHH
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK--------------V---------FVGKRNLLHLNV  453 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~--------------~---------~~~~~~~~~~nl  453 (553)
                      .+..+...+|.+|-+|++++|.+...++|+    .+|.+.....              .         +...-...|..+
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIk----qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l  213 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIK----QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL  213 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            477888999999999999999999999998    5665532110              0         000001234444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      |....+++.+.+|+-++++||..+|.|.+.+++++..|.++|++..|...|.+++.+.|.
T Consensus       214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~  273 (895)
T KOG2076|consen  214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP  273 (895)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence            555555566666666666666666666666666666666666666666666666666663

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=6.8e-06  Score=79.72  Aligned_cols=105  Identities=21%  Similarity=0.334  Sum_probs=91.4

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHH
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKV  473 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~a  473 (553)
                      .++.+.-.|..++..+++..|...|.+|++    +.|++           ..++.-+|.++....   .-.++...+++|
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r----L~g~n-----------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a  219 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALR----LAGDN-----------PEILLGLAEALYYQAGQQMTAKARALLRQA  219 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence            356677899999999999999999999999    77877           445666666655543   467899999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 008788          474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP  516 (553)
Q Consensus       474 l~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~  516 (553)
                      |..||.|+.+++.+|..+++.|+|.+|...++..|++.|.+.+
T Consensus       220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            9999999999999999999999999999999999999998743

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.32  E-value=8.4e-06  Score=69.38  Aligned_cols=100  Identities=24%  Similarity=0.313  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHH
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAAL  522 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~--~~~~~~l  522 (553)
                      ..++++|..+++.++|++|+..|.+++..+|++   ..+++.+|.++...+++++|+..|++++..+|++.  ..+...+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            467899999999999999999999999999876   67999999999999999999999999999999863  2344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccc
Q 008788          523 SKLKKQRRKLKVRLENSLKGCLTRSL  548 (553)
Q Consensus       523 ~~l~~~~~~~~~~~~~~~~~mf~~~~  548 (553)
                      ..+....... .+-.+.|..+....+
T Consensus        83 ~~~~~~~~~~-~~A~~~~~~~~~~~p  107 (119)
T TIGR02795        83 GMSLQELGDK-EKAKATLQQVIKRYP  107 (119)
T ss_pred             HHHHHHhCCh-HHHHHHHHHHHHHCc
Confidence            4443333222 223345555544433

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.31  E-value=6.1e-06  Score=85.05  Aligned_cols=78  Identities=18%  Similarity=0.183  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       450 ~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      +...|..++..++|.+|+..+++||+++|+++.+|+.+|.+|..+|+|++|+.++++|++++|++ ..+...+..+...
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~   82 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999987 3455444444333

>PRK01490 tig trigger factor; Provisional

Probab=98.27  E-value=4.2e-06  Score=88.81  Aligned_cols=86  Identities=17%  Similarity=0.141  Sum_probs=71.4

Q ss_pred             CCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCce
Q 008788          168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE  247 (553)
Q Consensus       168 ~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~~  247 (553)
                      .++.||.|+++|++.. +|..++++ ...++.|.+|.+++++||+++|.||++|+++.|.++....|+...    -++.+
T Consensus       157 ~~~~gD~V~vd~~~~~-~g~~~~~~-~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~----lagk~  230 (435)
T PRK01490        157 PAENGDRVTIDFVGSI-DGEEFEGG-KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAED----LAGKE  230 (435)
T ss_pred             cCCCCCEEEEEEEEEE-CCEECcCC-CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccccc----CCCCe
Confidence            4789999999999975 88877654 456899999999999999999999999999999887655554322    15689


Q ss_pred             EEEEEEEeeeee
Q 008788          248 VHFEVELVHLIQ  259 (553)
Q Consensus       248 l~~~v~l~~~~~  259 (553)
                      +.|.|+|+++.+
T Consensus       231 ~~f~v~v~~V~~  242 (435)
T PRK01490        231 ATFKVTVKEVKE  242 (435)
T ss_pred             EEEEEEEEEecc
Confidence            999999999953

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.27  E-value=6.6e-06  Score=73.38  Aligned_cols=97  Identities=21%  Similarity=0.350  Sum_probs=65.7

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp  478 (553)
                      ......|..++..|+|++|+..|++++.    ..+++        .+...+.+++|.|++.+++|++|+..++. +.-.+
T Consensus        49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~----~~~d~--------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~  115 (145)
T PF09976_consen   49 LAALQLAKAAYEQGDYDEAKAALEKALA----NAPDP--------ELKPLARLRLARILLQQGQYDEALATLQQ-IPDEA  115 (145)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCH--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcc
Confidence            3445677777777888888888887777    22211        12244667778888888888888887755 33334


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMM  508 (553)
Q Consensus       479 ~n~ka~~r~g~a~~~lg~~~~A~~~l~~al  508 (553)
                      -.+.++..+|.++...|++++|+..|++||
T Consensus       116 ~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  116 FKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            455667777888888888888888877764

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.25  E-value=1.6e-05  Score=67.86  Aligned_cols=98  Identities=17%  Similarity=0.133  Sum_probs=83.6

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~  479 (553)
                      .+.+.+..+-..|+.++|+..|++|+.    .....+        ....++.++|.++..+|++++|+..+++++...|+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~----~gL~~~--------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALA----AGLSGA--------DRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCch--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            355677788889999999999999998    333221        13568899999999999999999999999999887


Q ss_pred             ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788          480 ---HVKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (553)
Q Consensus       480 ---n~ka~~r~g~a~~~lg~~~~A~~~l~~al~  509 (553)
                         +.....-++.++..+|++++|+..+-.++.
T Consensus        71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   71 DELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence               888888899999999999999999988774

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.23  E-value=9.7e-06  Score=81.50  Aligned_cols=112  Identities=17%  Similarity=0.184  Sum_probs=96.7

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+-++||..|..|++++|...|++||+    -+           .-...+++|+++.+-++++.++|++++-+.-.+-
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~----nd-----------asc~ealfniglt~e~~~~ldeald~f~klh~il  554 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALN----ND-----------ASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL  554 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHc----Cc-----------hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999998    11           1235689999999999999999999999988888


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      -+|+..++.++.+|..+.+...|+++|.++..+-|++ +.+...|..|
T Consensus       555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~d-p~ilskl~dl  601 (840)
T KOG2003|consen  555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND-PAILSKLADL  601 (840)
T ss_pred             HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC-HHHHHHHHHH
Confidence            8899999999999999999999999999999999986 4455445444

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=3.8e-06  Score=87.81  Aligned_cols=82  Identities=17%  Similarity=0.206  Sum_probs=66.4

Q ss_pred             CCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEE--EEeCCccCCCCCCCCCCCCc
Q 008788          169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVI--YVTSQYLTPSPLMPVVEGCE  246 (553)
Q Consensus       169 ~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~--~v~~~~~~g~~~~~~i~~~~  246 (553)
                      ++.||.|+|+|.| ..||..|... ..+.+.+.+|+++++|||+.+|.||+.|+...|  +.|.+|.-++.      .++
T Consensus       158 a~~gD~v~IDf~g-~iDg~~fegg-~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------aGK  229 (441)
T COG0544         158 AENGDRVTIDFEG-SVDGEEFEGG-KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------AGK  229 (441)
T ss_pred             cccCCEEEEEEEE-EEcCeeccCc-cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh------CCC
Confidence            8889999999999 6788877643 446789999999999999999999999999875  44444433222      567


Q ss_pred             eEEEEEEEeeee
Q 008788          247 EVHFEVELVHLI  258 (553)
Q Consensus       247 ~l~~~v~l~~~~  258 (553)
                      +..|.|+|+.+.
T Consensus       230 ~a~F~V~vkeVk  241 (441)
T COG0544         230 EATFKVKVKEVK  241 (441)
T ss_pred             ceEEEEEEEEEe
Confidence            889999999985

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.21  E-value=4.6e-06  Score=65.69  Aligned_cols=74  Identities=22%  Similarity=0.274  Sum_probs=60.9

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+...|..++..|+|++|+..|++|++......+.        ....+.++.|+|.|+..+|++++|+.+++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--------HPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            356778899999999999999999999999974444331        122367899999999999999999999999998


Q ss_pred             hC
Q 008788          476 AN  477 (553)
Q Consensus       476 ~d  477 (553)
                      +.
T Consensus        75 i~   76 (78)
T PF13424_consen   75 IF   76 (78)
T ss_dssp             HH
T ss_pred             hh
Confidence            63

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.21  E-value=6.7e-06  Score=63.75  Aligned_cols=69  Identities=26%  Similarity=0.467  Sum_probs=61.8

Q ss_pred             ccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008788          406 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLY  485 (553)
Q Consensus       406 ~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~  485 (553)
                      +.+++.++|++|+..+++++.    ++|.+           ..++.++|.|+.++|+|.+|+..++++++.+|++..+..
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALE----LDPDD-----------PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHH----hCccc-----------chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            457889999999999999999    77776           678999999999999999999999999999999988776


Q ss_pred             HHHH
Q 008788          486 RRGM  489 (553)
Q Consensus       486 r~g~  489 (553)
                      -++.
T Consensus        68 ~~a~   71 (73)
T PF13371_consen   68 LRAM   71 (73)
T ss_pred             HHHh
Confidence            6554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.20  E-value=1.4e-05  Score=82.03  Aligned_cols=71  Identities=28%  Similarity=0.376  Sum_probs=62.5

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (553)
                      ...+..+.+.|..|++.|+|++|+..|++||+    ++|.+.+.        ..+|+|+|.||.++|++++|+.++.+|+
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe----L~Pd~aeA--------~~A~yNLAcaya~LGr~dEAla~LrrAL  139 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE----LNPNPDEA--------QAAYYNKACCHAYREEGKKAADCLRTAL  139 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCchHH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44678888999999999999999999999999    78877320        1469999999999999999999999999


Q ss_pred             hhC
Q 008788          475 DAN  477 (553)
Q Consensus       475 ~~d  477 (553)
                      ++.
T Consensus       140 els  142 (453)
T PLN03098        140 RDY  142 (453)
T ss_pred             Hhc
Confidence            983

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=98.20  E-value=1.7e-05  Score=79.34  Aligned_cols=137  Identities=11%  Similarity=0.217  Sum_probs=103.5

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc----CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~----~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  472 (553)
                      +.......|..+|++++|..|...|+.||+++..-    .|...+ ...+-....-+...+..||+++++.+.|+.+..+
T Consensus       175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~-~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr  253 (569)
T PF15015_consen  175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKAS-AEDISSVASFIETKLVTCYLRMRKPDLALNHSHR  253 (569)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCC-hhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence            44555678899999999999999999999988653    222211 1223333345677899999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHHHHHH
Q 008788          473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV---DKSSEPDATAALSKLKKQRRKLKV  534 (553)
Q Consensus       473 al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l---~P~~~~~~~~~l~~l~~~~~~~~~  534 (553)
                      .+.++|.+..-+.|+|.|+..|.+|.+|-+.+-.|.-+   .-.+..-+.+.++...+.+-+..-
T Consensus       254 sI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWqamiEeAi  318 (569)
T PF15015_consen  254 SINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQAMIEEAI  318 (569)
T ss_pred             hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999887766543   333333455666666665544433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.18  E-value=2.3e-05  Score=75.17  Aligned_cols=106  Identities=18%  Similarity=0.287  Sum_probs=92.6

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +...++.+-.+++.|+|..|...|..-++    .-|.+.        ....+++=|+.|++.+|+|.+|...+..+.+-.
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~----~YP~s~--------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~  208 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIK----KYPNST--------YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY  208 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCc--------ccchhHHHHHHHHHhcccchHHHHHHHHHHHhC
Confidence            34488999999999999999999999888    344331        124688889999999999999999999999998


Q ss_pred             CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          478 PAHVK---GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       478 p~n~k---a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      |.++|   ++|.+|.+...+|+.++|...|+++++--|+..
T Consensus       209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            87765   599999999999999999999999999999964

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.17  E-value=7.1e-06  Score=79.55  Aligned_cols=110  Identities=20%  Similarity=0.339  Sum_probs=88.8

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---C
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP---A  479 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp---~  479 (553)
                      ..|..+|-.++.+.|+..|++.|.    +.-.+           ..+++|+|+|.+-.++++-++..+.+|+..-.   .
T Consensus       329 cia~~yfY~~~PE~AlryYRRiLq----mG~~s-----------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~  393 (478)
T KOG1129|consen  329 CIAVGYFYDNNPEMALRYYRRILQ----MGAQS-----------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ  393 (478)
T ss_pred             eeeeccccCCChHHHHHHHHHHHH----hcCCC-----------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch
Confidence            445566667777777777777776    33333           46899999999999999999999999997743   3


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      -+..||++|.+..-.|++..|.++|+-||.-||+| .++.+.|..|+.+
T Consensus       394 aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-~ealnNLavL~~r  441 (478)
T KOG1129|consen  394 AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-GEALNNLAVLAAR  441 (478)
T ss_pred             hhhhhhccceeEEeccchHHHHHHHHHHhccCcch-HHHHHhHHHHHhh
Confidence            56789999999999999999999999999999997 4566666666543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.16  E-value=2.1e-05  Score=72.38  Aligned_cols=78  Identities=15%  Similarity=0.252  Sum_probs=67.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~  523 (553)
                      ..+++++|.++..++++++|+.+|.+++.+.|+.   ..+++.+|.++..+|+|++|+..|+++++++|++. .....+.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg  113 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP-SALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-HHHHHHH
Confidence            6689999999999999999999999999987653   57999999999999999999999999999999863 3443333


Q ss_pred             HH
Q 008788          524 KL  525 (553)
Q Consensus       524 ~l  525 (553)
                      .+
T Consensus       114 ~~  115 (172)
T PRK02603        114 VI  115 (172)
T ss_pred             HH
Confidence            33

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.15  E-value=5.6e-05  Score=77.48  Aligned_cols=109  Identities=28%  Similarity=0.328  Sum_probs=83.2

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k  482 (553)
                      ..+..+++.++..+|.+.+++|+.    ..|..           ..+..|+|.++++.|++.+|+...+..+..+|+++.
T Consensus       345 ~~~~i~~~~nk~~~A~e~~~kal~----l~P~~-----------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~  409 (484)
T COG4783         345 LAGDILLEANKAKEAIERLKKALA----LDPNS-----------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN  409 (484)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHh----cCCCc-----------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence            456667777888888888888888    56654           567889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       483 a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~  527 (553)
                      .|..+|++|..+|+-.+|...+...+.+.-.-+ .+...+...++
T Consensus       410 ~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~-~A~~~l~~A~~  453 (484)
T COG4783         410 GWDLLAQAYAELGNRAEALLARAEGYALAGRLE-QAIIFLMRASQ  453 (484)
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHH-HHHHHHHHHHH
Confidence            999988888888888777777777777765532 24434443333

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.12  E-value=2.6e-05  Score=84.92  Aligned_cols=102  Identities=23%  Similarity=0.340  Sum_probs=89.2

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      +.+.-+.+.+..+...|+|.+|+..|..++.    ..+..          ...+|+++|.||+.++.|++|+.++.+||.
T Consensus       412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~----~~~~~----------~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~  477 (895)
T KOG2076|consen  412 DDVDLYLDLADALTNIGKYKEALRLLSPITN----REGYQ----------NAFVWYKLARCYMELGEYEEAIEFYEKVLI  477 (895)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHHHhc----Ccccc----------chhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3466788889999999999999999999877    22222          156899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~  511 (553)
                      ++|+|..+...++..+.++|++++|.+.+.....-|
T Consensus       478 ~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D  513 (895)
T KOG2076|consen  478 LAPDNLDARITLASLYQQLGNHEKALETLEQIINPD  513 (895)
T ss_pred             cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence            999999999999999999999999999998876444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.11  E-value=8.3e-06  Score=81.99  Aligned_cols=98  Identities=17%  Similarity=0.310  Sum_probs=87.8

Q ss_pred             HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008788          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (553)
Q Consensus       402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~  481 (553)
                      .+.||.+|++.+|.+|++.|+.||+....+          .++.+..+++|++..+.++|+|+.|+..++..++..| |.
T Consensus       241 mnigni~~kkr~fskaikfyrmaldqvpsi----------nk~~rikil~nigvtfiq~gqy~dainsfdh~m~~~p-n~  309 (840)
T KOG2003|consen  241 MNIGNIHFKKREFSKAIKFYRMALDQVPSI----------NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAP-NF  309 (840)
T ss_pred             eeecceeeehhhHHHHHHHHHHHHhhcccc----------chhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCc-cH
Confidence            378999999999999999999999944333          2445688999999999999999999999999999999 77


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      ++-+++-.|++..|+-+..++.|++.+.+
T Consensus       310 ~a~~nl~i~~f~i~d~ekmkeaf~kli~i  338 (840)
T KOG2003|consen  310 IAALNLIICAFAIGDAEKMKEAFQKLIDI  338 (840)
T ss_pred             HhhhhhhhhheecCcHHHHHHHHHHHhcC
Confidence            88889999999999999999999999875

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.11  E-value=0.00013  Score=65.06  Aligned_cols=111  Identities=18%  Similarity=0.104  Sum_probs=85.2

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccC-------CCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-------PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  471 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~-------~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  471 (553)
                      ..+...|......++...++..|.+|+..+..--       ++-......+......+...++.++...+++.+|+..|.
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            3344556666677889999999999999654311       111233455666677888899999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788          472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (553)
Q Consensus       472 ~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~  509 (553)
                      +++..||.+..+|..+-.+|...|++.+|++.|+++.+
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.10  E-value=3.6e-05  Score=81.63  Aligned_cols=109  Identities=21%  Similarity=0.248  Sum_probs=91.5

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (553)
                      +..+..++..|+.+...++|.+|+..|++|+..+....-.+       ....+..+.|||..|.+.|+|.+|..+|.+|+
T Consensus       238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al  310 (508)
T KOG1840|consen  238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL  310 (508)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            34455666799999999999999999999999877543332       22346789999999999999999999999999


Q ss_pred             hhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          475 DAN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       475 ~~d--------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      ++-        |.-...+-..+..+...+++++|...|++++++
T Consensus       311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  311 EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            874        334567888999999999999999999999987

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.09  E-value=4.4e-05  Score=86.26  Aligned_cols=146  Identities=10%  Similarity=0.018  Sum_probs=105.8

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCCh-h---------------H-HHHHhh------hhhHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD-E---------------E-GKVFVG------KRNLLHLNVA  454 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~-e---------------e-~~~~~~------~~~~~~~nla  454 (553)
                      +...+..+...++.|+|..|+..|+++++    .+|.+. .               + ...++.      .-...+..+|
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~----~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA  109 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESK----AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA  109 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHh----hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence            44667888899999999999999999998    455442 0               0 011111      1122344447


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q 008788          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKV  534 (553)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~  534 (553)
                      .++..+++|++|++.++++++.+|+|+.+++.++.++..++++++|++.++++.+++|.+. .. ..+..+...... ..
T Consensus       110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~-~~-l~layL~~~~~~-~~  186 (822)
T PRK14574        110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ-NY-MTLSYLNRATDR-NY  186 (822)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH-HH-HHHHHHHHhcch-HH
Confidence            7999999999999999999999999999999999999999999999999999999999853 22 334444333222 22


Q ss_pred             HHHHHHHhhcccccCC
Q 008788          535 RLENSLKGCLTRSLGK  550 (553)
Q Consensus       535 ~~~~~~~~mf~~~~~~  550 (553)
                      +.-..|++++...+++
T Consensus       187 ~AL~~~ekll~~~P~n  202 (822)
T PRK14574        187 DALQASSEAVRLAPTS  202 (822)
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            3677788887776654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.08  E-value=5.5e-05  Score=71.75  Aligned_cols=68  Identities=18%  Similarity=0.283  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 008788          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP  516 (553)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~  516 (553)
                      ++.-++..++..|+|.+|+..++++..++|++.++|.-+|.+|.++|++++|+..|.+|++|.|++..
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~  169 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS  169 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch
Confidence            44458888999999999999999999999999999999999999999999999999999999998654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.07  E-value=6e-06  Score=53.61  Aligned_cols=33  Identities=30%  Similarity=0.632  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      +++|+++|.++..+++|++|+.+|++|++++|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            467777777777777777777777777777775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.06  E-value=8.8e-05  Score=76.07  Aligned_cols=114  Identities=16%  Similarity=0.170  Sum_probs=92.1

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~  479 (553)
                      ..+-++...|..|+++.|...++.-+.    ..|++           .-++.-.+..+++.++.++|++.+.+++.++|+
T Consensus       308 a~YG~A~~~~~~~~~d~A~~~l~~L~~----~~P~N-----------~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~  372 (484)
T COG4783         308 AQYGRALQTYLAGQYDEALKLLQPLIA----AQPDN-----------PYYLELAGDILLEANKAKEAIERLKKALALDPN  372 (484)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Confidence            344455555666666666666665444    56666           456667789999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      +.-..+.+|.++++.|++.+|+..+++.+.-+|++ +..+..|.......
T Consensus       373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-p~~w~~LAqay~~~  421 (484)
T COG4783         373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED-PNGWDLLAQAYAEL  421 (484)
T ss_pred             ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHh
Confidence            99999999999999999999999999999999997 66888777665544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.04  E-value=5.5e-05  Score=82.99  Aligned_cols=118  Identities=16%  Similarity=0.192  Sum_probs=99.5

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp  478 (553)
                      ..+--.+|.+|-.|+|..+...+.-|+..-     .       .....+..++++|.||..+|+|++|..+|.+++..++
T Consensus       271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~-------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~  338 (1018)
T KOG2002|consen  271 VALNHLANHFYFKKDYERVWHLAEHAIKNT-----E-------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN  338 (1018)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----h-------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence            345567889999999999999999998832     1       1233467899999999999999999999999999999


Q ss_pred             CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          479 AH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       479 ~n-~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      +| .=++|.+|+.+++.|+++.|..+|+++++..|++ .+....|..+-...
T Consensus       339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~-~etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN-YETMKILGCLYAHS  389 (1018)
T ss_pred             CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch-HHHHHHHHhHHHhh
Confidence            99 8899999999999999999999999999999997 45666665554444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.04  E-value=9.1e-05  Score=79.72  Aligned_cols=113  Identities=15%  Similarity=0.168  Sum_probs=85.8

Q ss_pred             HHHHHhhhccccccC---CHHHHHHHHHHHHHHhhccCCCCh---------------------hHHHH----H-------
Q 008788          398 AEKIRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVNPQDD---------------------EEGKV----F-------  442 (553)
Q Consensus       398 a~~~k~~G~~~~~~g---~~~~A~~~Y~~Al~~l~~~~~~~~---------------------ee~~~----~-------  442 (553)
                      |-.+.-+|..++.+.   .+.+|+.+|++|++    ++|.+.                     .....    .       
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~----ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~  414 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILK----SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP  414 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence            445556666665443   47889999998887    444331                     11000    0       


Q ss_pred             -hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          443 -VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       443 -~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                       ......+|.-+|..++..+++++|..++++|++++| +.-+|+.+|+++...|++++|.+.|++|+.++|.+.
T Consensus       415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence             111124577788888899999999999999999999 688999999999999999999999999999999864

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.99  E-value=5.7e-05  Score=82.85  Aligned_cols=129  Identities=22%  Similarity=0.306  Sum_probs=106.1

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      .+.+.+.|..+|..|++..|...+.+|+..+......+  +.   ....+.+.+|+|.|+-.++++..|...|..++...
T Consensus       452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d--e~---~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh  526 (1018)
T KOG2002|consen  452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD--EG---KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH  526 (1018)
T ss_pred             HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc--cc---ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence            45577899999999999999999999998643211111  11   22336678999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKL  532 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~  532 (553)
                      |..+.||.|+|......++..+|...++.++.+|..| ++++..+-.+..+..+.
T Consensus       527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n-p~arsl~G~~~l~k~~~  580 (1018)
T KOG2002|consen  527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN-PNARSLLGNLHLKKSEW  580 (1018)
T ss_pred             chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC-cHHHHHHHHHHHhhhhh
Confidence            9999999999977777789999999999999999887 67998888776655443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.99  E-value=0.0001  Score=78.23  Aligned_cols=123  Identities=20%  Similarity=0.262  Sum_probs=93.8

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-  476 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-  476 (553)
                      ...+...+..++.+|+|+.|+..+++|++.+....-..       .........++|..|+.+++|.+|+..|.+||.+ 
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~-------hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~  271 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLK-------HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR  271 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCcc-------CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            44455589999999999999999999999765433211       1122345557999999999999999999999976 


Q ss_pred             -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHH
Q 008788          477 -------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS----SEPDATAALSKLKK  527 (553)
Q Consensus       477 -------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~----~~~~~~~~l~~l~~  527 (553)
                             +|.-+-++.++|.+|...|+|++|..++++|+++--.    +..++...|..+..
T Consensus       272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~  333 (508)
T KOG1840|consen  272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA  333 (508)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence                   3555778999999999999999999999999987321    22345555554433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.98  E-value=7.6e-05  Score=84.35  Aligned_cols=97  Identities=11%  Similarity=0.114  Sum_probs=76.7

Q ss_pred             CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY  491 (553)
Q Consensus       412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~  491 (553)
                      |+|.+|+..|+++++    .+|.+           ..++.-++..+..++++.+|+..+.+++..+|.+.-. ..++..+
T Consensus       116 gdyd~Aiely~kaL~----~dP~n-----------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~  179 (822)
T PRK14574        116 KRWDQALALWQSSLK----KDPTN-----------PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN  179 (822)
T ss_pred             CCHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence            889999999999988    78877           3466678999999999999999999999999985544 3345555


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          492 MALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       492 ~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      ...+++.+|++.|+++++++|++.. +..++-.+
T Consensus       180 ~~~~~~~~AL~~~ekll~~~P~n~e-~~~~~~~~  212 (822)
T PRK14574        180 RATDRNYDALQASSEAVRLAPTSEE-VLKNHLEI  212 (822)
T ss_pred             HhcchHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Confidence            5577777799999999999999854 44333333

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.97  E-value=7.1e-05  Score=77.12  Aligned_cols=110  Identities=20%  Similarity=0.165  Sum_probs=88.6

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhH--------------------HHHH------hhhhhHHHHHH
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE--------------------GKVF------VGKRNLLHLNV  453 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee--------------------~~~~------~~~~~~~~~nl  453 (553)
                      ....++..++..|++.+|+..+.++++    ..|.+...                    .+.+      .......+.++
T Consensus        45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  120 (355)
T cd05804          45 RAHVEALSAWIAGDLPKALALLEQLLD----DYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML  120 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence            344678888999999999999999987    33433211                    0111      01112355688


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      |.++..+|++.+|+..++++++++|+++.++..+|.++..+|++++|+..+++++.+.|.
T Consensus       121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            999999999999999999999999999999999999999999999999999999999875

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.97  E-value=4.3e-05  Score=76.22  Aligned_cols=133  Identities=16%  Similarity=0.183  Sum_probs=96.3

Q ss_pred             HHHHHHhhhcccccc-CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          397 EAEKIRVTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~-g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      .+..+...|..+... +++++|+..|++|++++.....         ......++.++|.++.++++|++|+..+.++..
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---------PHSAAECLLKAADLYARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            467788888888888 9999999999999998765431         112357889999999999999999999999987


Q ss_pred             hCCC------CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008788          476 ANPA------HVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSL  540 (553)
Q Consensus       476 ~dp~------n~k-a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~  540 (553)
                      ..-+      +++ .+++.+.|++..|++..|...|++....+|...  -.++-+.+...+...+......|
T Consensus       184 ~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~--~s~E~~~~~~l~~A~~~~D~e~f  253 (282)
T PF14938_consen  184 KCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA--SSREYKFLEDLLEAYEEGDVEAF  253 (282)
T ss_dssp             TCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST--TSHHHHHHHHHHHHHHTT-CCCH
T ss_pred             HhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC--CcHHHHHHHHHHHHHHhCCHHHH
Confidence            5321      344 456788899999999999999999999999642  12334445555555555443333

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.96  E-value=0.00031  Score=58.29  Aligned_cols=110  Identities=20%  Similarity=0.340  Sum_probs=82.1

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-  476 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-  476 (553)
                      +-.....|...++.|-|.+|...|++|.+.-..+.+...-+   ..-.-.-||.-|+-++..+++|++++....++|.. 
T Consensus         9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFD---h~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF   85 (144)
T PF12968_consen    9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFD---HDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF   85 (144)
T ss_dssp             HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcc---cccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            33445677788889999999999999999766654432111   11122568889999999999999999999999954 


Q ss_pred             ------CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          477 ------NPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       477 ------dp~----n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                            +.+    ++.+.|.||.++..+|..++|+..|+.+-+.
T Consensus        86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                  333    4678899999999999999999999988653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=2.4e-06  Score=79.65  Aligned_cols=85  Identities=24%  Similarity=0.315  Sum_probs=75.0

Q ss_pred             ccccCCCceEEEEEecCCCCC-CCCCCCEEEEEEEEEecC--CcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCC
Q 008788           23 RMKIVPGSLMKAVMRPGGGDS-TPSDGDQVAYHCTVRTLD--GVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM   99 (553)
Q Consensus        23 ~~~~~~~g~~~~i~~~G~g~~-~~~~gd~V~v~y~~~~~~--g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m   99 (553)
                      +..+...|+.++|+..|.|+- ....|..|.+||.....+  ++++|+|+.    .++|+.+++|...-+|-|+..|..|
T Consensus         4 ra~l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk----~gkPmeiiiGkkFkL~VwE~il~tM   79 (329)
T KOG0545|consen    4 RALLNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK----VGKPMEIIIGKKFKLEVWEIILTTM   79 (329)
T ss_pred             hhhccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhh----cCCCeEEeeccccccHHHHHHHHHH
Confidence            445677899999999999984 356899999999988754  689999998    8999999999999999999999999


Q ss_pred             CCCcEEEEEEcC
Q 008788          100 LKGEVSMFKMKP  111 (553)
Q Consensus       100 ~~G~~~~~~ip~  111 (553)
                      +++|.+.|++.-
T Consensus        80 ~v~EvaqF~~d~   91 (329)
T KOG0545|consen   80 RVHEVAQFWCDT   91 (329)
T ss_pred             hhhhHHHhhhhh
Confidence            999999998864

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.95  E-value=2e-05  Score=51.02  Aligned_cols=34  Identities=35%  Similarity=0.612  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      +++|+.+|.+++.+|+|++|+++|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4678888888888888888888888888888864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.94  E-value=2.4e-05  Score=84.43  Aligned_cols=114  Identities=28%  Similarity=0.493  Sum_probs=100.9

Q ss_pred             ChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc--CCHHHHH
Q 008788          390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--GECRKSI  467 (553)
Q Consensus       390 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl--~~~~~A~  467 (553)
                      +.+..+..+..++.+||.+|+.++|..|.-.|..++..+...+..           ...+..|.+.|++.+  ++|..++
T Consensus        45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~-----------~a~~~~~~~s~~m~~~l~~~~~~~  113 (748)
T KOG4151|consen   45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHV-----------VATLRSNQASCYMQLGLGEYPKAI  113 (748)
T ss_pred             chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchh-----------hhhHHHHHHHHHhhcCccchhhhc
Confidence            556677889999999999999999999999999999954432222           267888999998876  5899999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       468 ~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ..|+-|+...|...+++++|+.+|..++.++-|.+++......+|++
T Consensus       114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~  160 (748)
T KOG4151|consen  114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN  160 (748)
T ss_pred             CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            99999999999999999999999999999999999999999999997

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.94  E-value=5.2e-05  Score=80.87  Aligned_cols=101  Identities=18%  Similarity=0.273  Sum_probs=89.9

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +.+.+..|+..+.+++|++|.+.++.+++    ++|..           ...|++++.|+++++++..|..+|.+.+.++
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~----~nplq-----------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~  549 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLE----INPLQ-----------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLE  549 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhh----cCccc-----------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence            44556677778888999999999999998    56544           6789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      |+|..+|.+++.+|..+++-.+|...++.|++-+-+
T Consensus       550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~  585 (777)
T KOG1128|consen  550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ  585 (777)
T ss_pred             CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999999999998754

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.92  E-value=8e-05  Score=76.75  Aligned_cols=99  Identities=17%  Similarity=0.250  Sum_probs=86.1

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp  478 (553)
                      ..+...|..+...|++.+|+..|+++++    ..|.+           ..++.++|.++...|++++|+.++.+++...|
T Consensus       115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         115 YLLGMLAFGLEEAGQYDRAEEAARRALE----LNPDD-----------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCC-----------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            3344677788899999999999999999    67766           56789999999999999999999999999987


Q ss_pred             CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788          479 AHV----KGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (553)
Q Consensus       479 ~n~----ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P  512 (553)
                      .+.    ..++.+|.++..+|++++|+..|++++...|
T Consensus       180 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         180 CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            432    4567899999999999999999999987777

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.90  E-value=0.00014  Score=71.39  Aligned_cols=100  Identities=15%  Similarity=0.138  Sum_probs=74.3

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHH
Q 008788          448 LLHLNVAACL-LKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP--DATAA  521 (553)
Q Consensus       448 ~~~~nla~~~-~kl~~~~~A~~~~~~al~~dp~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~--~~~~~  521 (553)
                      ...++.|.++ ++.++|++|+..|...+...|++   +.|+|.+|.+|+..|+|++|+..|+++++..|++..  ++...
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            5678888887 66799999999999999999988   589999999999999999999999999999998643  22222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccc
Q 008788          522 LSKLKKQRRKLKVRLENSLKGCLTRSL  548 (553)
Q Consensus       522 l~~l~~~~~~~~~~~~~~~~~mf~~~~  548 (553)
                      +..+.... ....+-++.|..+....+
T Consensus       223 lg~~~~~~-g~~~~A~~~~~~vi~~yP  248 (263)
T PRK10803        223 VGVIMQDK-GDTAKAKAVYQQVIKKYP  248 (263)
T ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHHCc
Confidence            22232221 223344555555544443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.89  E-value=1.5e-05  Score=51.75  Aligned_cols=34  Identities=24%  Similarity=0.457  Sum_probs=31.7

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008788          469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR  502 (553)
Q Consensus       469 ~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~  502 (553)
                      .|++||+++|+|+.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999999973

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.89  E-value=0.00017  Score=75.28  Aligned_cols=67  Identities=13%  Similarity=0.157  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      .++.-||..|...++|++|+++++.||..+|+|...|.|+|-++..-.+.++|+..|++||+|.|..
T Consensus       431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y  497 (579)
T KOG1125|consen  431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY  497 (579)
T ss_pred             hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence            4777889999999999999999999999999999999999999999999999999999999999973

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.85  E-value=0.00026  Score=68.93  Aligned_cols=138  Identities=14%  Similarity=0.201  Sum_probs=101.8

Q ss_pred             CCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHH----------HhhccCCCChhHHH---------------HH
Q 008788          388 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR----------DFNHVNPQDDEEGK---------------VF  442 (553)
Q Consensus       388 ~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~----------~l~~~~~~~~ee~~---------------~~  442 (553)
                      +++++++   ...+.+.|..++..|-|++|...|..-.+          .|-.+-... .||+               ..
T Consensus       100 dlT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~~~q~~  175 (389)
T COG2956         100 DLTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQAT-REWEKAIDVAERLVKLGGQTY  175 (389)
T ss_pred             CCchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCCccc
Confidence            3455554   55677888888888888888887765433          110000000 1111               12


Q ss_pred             hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008788          443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  522 (553)
Q Consensus       443 ~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l  522 (553)
                      .-..+.+|+-+|+.++-..+.+.|+....+|+..||.++.|-..+|.++...|+|+.|++.++++++-||+--+++...|
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L  255 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML  255 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            22345689999999999999999999999999999999999999999999999999999999999999998655566556


Q ss_pred             HHHHHHH
Q 008788          523 SKLKKQR  529 (553)
Q Consensus       523 ~~l~~~~  529 (553)
                      ..|-.++
T Consensus       256 ~~~Y~~l  262 (389)
T COG2956         256 YECYAQL  262 (389)
T ss_pred             HHHHHHh
Confidence            5555444

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.00018  Score=72.03  Aligned_cols=62  Identities=11%  Similarity=0.095  Sum_probs=40.9

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (553)
                      ...+.-+|+.+...++.++|+-.|+.|..    +.|-+           ..+|--+-.||+..+.+++|...++.++
T Consensus       334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~----Lap~r-----------L~~Y~GL~hsYLA~~~~kEA~~~An~~~  395 (564)
T KOG1174|consen  334 HEALILKGRLLIALERHTQAVIAFRTAQM----LAPYR-----------LEIYRGLFHSYLAQKRFKEANALANWTI  395 (564)
T ss_pred             chHHHhccHHHHhccchHHHHHHHHHHHh----cchhh-----------HHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence            44567889999999999999999999988    44433           3455555555555555555444444443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.81  E-value=3.3e-05  Score=50.09  Aligned_cols=33  Identities=18%  Similarity=0.430  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      .+|+++|.||+.+++|++|+.+|++||+++|+|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            579999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK11906 transcriptional regulator; Provisional

Probab=97.79  E-value=0.00034  Score=72.21  Aligned_cols=101  Identities=15%  Similarity=0.120  Sum_probs=70.9

Q ss_pred             HhhhccccccC---CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc---------CCHHHHHHH
Q 008788          402 RVTGNRLFKEG---KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL---------GECRKSIEA  469 (553)
Q Consensus       402 k~~G~~~~~~g---~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl---------~~~~~A~~~  469 (553)
                      .-+|...+.++   ..++|+..+.+|++. ..++|..           ..+|.-+|.||+.+         ..-.+|.+.
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-~~ldp~~-----------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~  326 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNK-SDIQTLK-----------TECYCLLAECHMSLALHGKSELELAAQKALEL  326 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhc-ccCCccc-----------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            34444444333   456788888888830 0045544           56777777777664         134567778


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       470 ~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      +.+|+++||.++.|++.+|.++...++++.|...|++|+.++|+.
T Consensus       327 A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~  371 (458)
T PRK11906        327 LDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI  371 (458)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc
Confidence            888888888888888888888888888888888888888888875

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.78  E-value=0.00014  Score=75.20  Aligned_cols=91  Identities=22%  Similarity=0.259  Sum_probs=75.9

Q ss_pred             hhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008788          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  483 (553)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka  483 (553)
                      .+..++..++..+|++..++++.    ..|.+           ..++...|..+++.++++.|+..+.+|.++.|++.++
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~----~~p~d-----------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~  270 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALK----ENPQD-----------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFET  270 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHH
Confidence            34444455677788888888886    55555           5677788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788          484 LYRRGMAYMALGEFEEAQRDFEMMMK  509 (553)
Q Consensus       484 ~~r~g~a~~~lg~~~~A~~~l~~al~  509 (553)
                      |+.++.+|..+|+|+.|+..++.+--
T Consensus       271 W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  271 WYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            99999999999999999988886543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.76  E-value=6e-05  Score=60.27  Aligned_cols=75  Identities=25%  Similarity=0.412  Sum_probs=60.1

Q ss_pred             cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008788          460 LGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRL  536 (553)
Q Consensus       460 l~~~~~A~~~~~~al~~dp~--n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~  536 (553)
                      .++|+.|+..++++++.+|.  +...+|.+|.||+++|+|++|+..+++ ++++|.+ ....-.+.+|-..+.+.++..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHH
Confidence            57899999999999999995  567788899999999999999999999 8888875 456666666666665555443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.75  E-value=0.00034  Score=78.66  Aligned_cols=100  Identities=16%  Similarity=0.075  Sum_probs=52.5

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      ...+......+...+++++|+.....+++    ..|..           ..+|+.+|..++..+++.++...  .++.+-
T Consensus        31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~----~~P~~-----------i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~   93 (906)
T PRK14720         31 FKELDDLIDAYKSENLTDEAKDICEEHLK----EHKKS-----------ISALYISGILSLSRRPLNDSNLL--NLIDSF   93 (906)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCcc-----------eehHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence            33444555566677888888888887777    34433           33344444444444333333222  222222


Q ss_pred             -------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          478 -------------------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       478 -------------------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                                         ++|-.|||.+|.||-++|++++|.+.|+++|+++|+|
T Consensus        94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n  149 (906)
T PRK14720         94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN  149 (906)
T ss_pred             ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc
Confidence                               2223555555555555555555555555555555554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.74  E-value=0.00016  Score=72.11  Aligned_cols=114  Identities=18%  Similarity=0.265  Sum_probs=82.2

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k  482 (553)
                      .....+++.+++.++...+.++.... . .+.+           ..++..+|.++.+.|++++|+..+.+||+++|+|..
T Consensus       115 ~~l~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~-----------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~  181 (280)
T PF13429_consen  115 SALQLYYRLGDYDEAEELLEKLEELP-A-APDS-----------ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD  181 (280)
T ss_dssp             ---H-HHHTT-HHHHHHHHHHHHH-T-----T------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhcc-C-CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            34445667788888888888866510 0 1122           568889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008788          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRR  530 (553)
Q Consensus       483 a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~  530 (553)
                      ++..++.++...|++++|++.++...+..|++. .+...+..+...+.
T Consensus       182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~-~~~~~la~~~~~lg  228 (280)
T PF13429_consen  182 ARNALAWLLIDMGDYDEAREALKRLLKAAPDDP-DLWDALAAAYLQLG  228 (280)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC-CHCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH-HHHHHHHHHhcccc
Confidence            999999999999999999999988888876653 35555555444443

>PRK11906 transcriptional regulator; Provisional

Probab=97.73  E-value=0.00038  Score=71.83  Aligned_cols=89  Identities=12%  Similarity=0.034  Sum_probs=79.4

Q ss_pred             cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008788          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (553)
Q Consensus       411 ~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a  490 (553)
                      ...-.+|.+.-.+|++    +++.|           ..++..+|......+++..|+..+++|+.++|+.+.+||.+|..
T Consensus       317 ~~~~~~a~~~A~rAve----ld~~D-----------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~  381 (458)
T PRK11906        317 ELAAQKALELLDYVSD----ITTVD-----------GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV  381 (458)
T ss_pred             hHHHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence            4455667777777777    67766           67888999988899999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          491 YMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       491 ~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      +...|+.++|++.+++|++|+|.-
T Consensus       382 ~~~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        382 HFHNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             HHHcCCHHHHHHHHHHHhccCchh
Confidence            999999999999999999999973

>TIGR00540 hemY_coli hemY protein

Probab=97.71  E-value=0.0016  Score=68.72  Aligned_cols=116  Identities=17%  Similarity=0.169  Sum_probs=76.2

Q ss_pred             HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCCh----------------hHH-HHH-------hhhhhHH
Q 008788          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD----------------EEG-KVF-------VGKRNLL  449 (553)
Q Consensus       394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~----------------ee~-~~~-------~~~~~~~  449 (553)
                      +...+.....+|-..+..|+|..|.+...++.+.    .|...                +.. +.+       ......+
T Consensus        80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~----~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~  155 (409)
T TIGR00540        80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADH----AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILV  155 (409)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHH
Confidence            4446777788888899999999999999888773    22210                000 000       0001123


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       450 ~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      ...++..++..++++.|+..+++.++..|+++.+++..+.++...|+|++|++.+.+.++....
T Consensus       156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~  219 (409)
T TIGR00540       156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF  219 (409)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            3334666677777777777777777777777777777777777777777777777777766443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.70  E-value=0.00022  Score=69.44  Aligned_cols=97  Identities=15%  Similarity=0.196  Sum_probs=80.0

Q ss_pred             HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008788          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (553)
Q Consensus       402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~  481 (553)
                      .+.|.++++.|-+.+|.+.++.+|.    ..+.            ...++.++-+|.+..++..|+..+...|+.-|.++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~----q~~~------------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V  290 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLT----QFPH------------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV  290 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhh----cCCc------------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh
Confidence            3789999999999999999999998    2222            34567778888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      .-+.-.|.+|..++++++|.+.|+.+++++|.|
T Consensus       291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n  323 (478)
T KOG1129|consen  291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN  323 (478)
T ss_pred             hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence            888888888888888888888888888888754

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.68  E-value=0.0022  Score=61.18  Aligned_cols=124  Identities=21%  Similarity=0.304  Sum_probs=98.0

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+.+.|....+.|+|.+|++.|++...    ..|..+.        ...+.+.++.+++|.++|.+|+...++=+++.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~----~~p~s~~--------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly  101 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDS----RHPFSPY--------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY  101 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCcc--------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            67788999999999999999999998776    6665532        13567789999999999999999999999999


Q ss_pred             CCCHH---HHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHH
Q 008788          478 PAHVK---GLYRRGMAYMALGE--------FEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRRKLK  533 (553)
Q Consensus       478 p~n~k---a~~r~g~a~~~lg~--------~~~A~~~l~~al~l~P~~~--~~~~~~l~~l~~~~~~~~  533 (553)
                      |.++.   ++|.+|.+++..=+        -.+|...|+..+.--|++.  .+++..+..++.++...+
T Consensus       102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E  170 (254)
T COG4105         102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE  170 (254)
T ss_pred             CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence            87765   68889999876432        3568888999999999864  456666666666655443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.67  E-value=0.00028  Score=74.47  Aligned_cols=117  Identities=15%  Similarity=0.133  Sum_probs=86.1

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      +..+.-.+|..++|...++.-+..|+    -.|...           ..+.-.|+.+..+|+-++|...+..+++.|+.+
T Consensus        10 lF~~~lk~yE~kQYkkgLK~~~~iL~----k~~eHg-----------eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S   74 (700)
T KOG1156|consen   10 LFRRALKCYETKQYKKGLKLIKQILK----KFPEHG-----------ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS   74 (700)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHH----hCCccc-----------hhHHhccchhhcccchHHHHHHHHHHhccCccc
Confidence            33455556667777777777766666    445442           233445666667888888999898899988888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 008788          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLK  533 (553)
Q Consensus       481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~  533 (553)
                      .-+|.-+|..+..-.+|++|+++|+.||+++|+| ..+.+-|..|+.+++..+
T Consensus        75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN-~qilrDlslLQ~QmRd~~  126 (700)
T KOG1156|consen   75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN-LQILRDLSLLQIQMRDYE  126 (700)
T ss_pred             chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhhh
Confidence            8888888988888889999999999999999887 456666777766665443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.0016  Score=61.59  Aligned_cols=130  Identities=17%  Similarity=0.150  Sum_probs=93.9

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHH-----------------HHHhh------hhhHHHHHHHHHHHH
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------KVFVG------KRNLLHLNVAACLLK  459 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~-----------------~~~~~------~~~~~~~nla~~~~k  459 (553)
                      -.|-.+-..|+|++|++.|..-|+    -+|.+.--.                 +.+.+      .-..+|.-+|..|+.
T Consensus        91 lkam~lEa~~~~~~A~e~y~~lL~----ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~  166 (289)
T KOG3060|consen   91 LKAMLLEATGNYKEAIEYYESLLE----DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS  166 (289)
T ss_pred             HHHHHHHHhhchhhHHHHHHHHhc----cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            344455556888888888888776    344432110                 00000      113578889999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008788          460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG---EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRL  536 (553)
Q Consensus       460 l~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg---~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~  536 (553)
                      +++|..|+-.+.+++-+.|.|+-.+-|+|..++-+|   +++-|+++|.+|++++|.+ ..+.-.+-.|...+.+.-+.+
T Consensus       167 ~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~-~ral~GI~lc~~~la~~sk~~  245 (289)
T KOG3060|consen  167 EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN-LRALFGIYLCGSALAQISKAE  245 (289)
T ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh-HHHHHHHHHHHHHHHHHhHHH
Confidence            999999999999999999999999999999988765   6788999999999999965 346666777777776554444


Q ss_pred             H
Q 008788          537 E  537 (553)
Q Consensus       537 ~  537 (553)
                      -
T Consensus       246 ~  246 (289)
T KOG3060|consen  246 L  246 (289)
T ss_pred             H
Confidence            3

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.65  E-value=0.00032  Score=50.33  Aligned_cols=48  Identities=19%  Similarity=0.391  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008788          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRR  530 (553)
Q Consensus       482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~  530 (553)
                      ..+|.+|.++.++|+|++|++..+.+|+++|+|. .+..+...+..+++
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~-Qa~~L~~~i~~~i~   49 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR-QAQSLKELIEDKIQ   49 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHHh
Confidence            3678899999999999999999999999999873 46655555555443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.65  E-value=0.003  Score=56.18  Aligned_cols=101  Identities=18%  Similarity=0.229  Sum_probs=79.7

Q ss_pred             HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (553)
Q Consensus       394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (553)
                      ....+..........+..+++..+...+.+.+.    ..|...        ....+.+.+|.+++..|++++|+..++.+
T Consensus         7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~----~~~~s~--------ya~~A~l~lA~~~~~~g~~~~A~~~l~~~   74 (145)
T PF09976_consen    7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAK----DYPSSP--------YAALAALQLAKAAYEQGDYDEAKAALEKA   74 (145)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCCCh--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            344566666777777778888888777777666    344331        12457788999999999999999999999


Q ss_pred             HhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788          474 LDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEM  506 (553)
Q Consensus       474 l~~dp~n---~ka~~r~g~a~~~lg~~~~A~~~l~~  506 (553)
                      +...|+.   ..+.+|+|.++...|+|++|+..|+.
T Consensus        75 ~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   75 LANAPDPELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            9987654   46899999999999999999999976

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.64  E-value=0.0022  Score=67.32  Aligned_cols=106  Identities=12%  Similarity=0.058  Sum_probs=54.9

Q ss_pred             HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (553)
Q Consensus       394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (553)
                      +.+.+......|-..+-.|+|.+|.+...++-+..    +..           ...+...|....++|+++.|..++.++
T Consensus        80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~----~~p-----------~l~~llaA~aA~~~g~~~~A~~~l~~A  144 (398)
T PRK10747         80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHA----EQP-----------VVNYLLAAEAAQQRGDEARANQHLERA  144 (398)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc----cch-----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            44466667778888888888888887666654411    000           111222233334555555555555555


Q ss_pred             HhhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          474 LDANPAHVKG-LYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       474 l~~dp~n~ka-~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      .+.+|++.-+ ..+.+..+...|+++.|++.++++++.+|+|
T Consensus       145 ~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~  186 (398)
T PRK10747        145 AELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRH  186 (398)
T ss_pred             HhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            5555544322 2233455555555555555555555555554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.62  E-value=0.00015  Score=50.05  Aligned_cols=39  Identities=15%  Similarity=0.210  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008788          450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRG  488 (553)
Q Consensus       450 ~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g  488 (553)
                      ++.+|.+|..+|++++|++.++++++.+|+|+.+++.+|
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            444555555555555555555555555555555555444

>TIGR00540 hemY_coli hemY protein

Probab=97.61  E-value=0.00069  Score=71.42  Aligned_cols=130  Identities=16%  Similarity=0.020  Sum_probs=94.4

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      ........+..+...|++++|...++++++    ..|++..         .....-+....+..++...++..++++++.
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~----~~pd~~~---------~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~  328 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLK----KLGDDRA---------ISLPLCLPIPRLKPEDNEKLEKLIEKQAKN  328 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHh----hCCCccc---------chhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence            345566788889999999999999999999    6665521         000112223334467889999999999999


Q ss_pred             CCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008788          477 NPAHV--KGLYRRGMAYMALGEFEEAQRDFE--MMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKG  542 (553)
Q Consensus       477 dp~n~--ka~~r~g~a~~~lg~~~~A~~~l~--~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  542 (553)
                      +|+|+  ..+..+|..+++.|+|++|+++|+  ++++.+|++.  ....+..+..+..+. .+-++.|++
T Consensus       329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~--~~~~La~ll~~~g~~-~~A~~~~~~  395 (409)
T TIGR00540       329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN--DLAMAADAFDQAGDK-AEAAAMRQD  395 (409)
T ss_pred             CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH--HHHHHHHHHHHcCCH-HHHHHHHHH
Confidence            99999  888899999999999999999999  6888999853  344666555544332 222444443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.60  E-value=0.00016  Score=49.90  Aligned_cols=42  Identities=29%  Similarity=0.370  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (553)
Q Consensus       481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~  523 (553)
                      +.+++.+|.+|..+|++++|++.|+++++++|+| .+++..|.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~-~~a~~~La   42 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDD-PEAWRALA   42 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-HHHHHHhh
Confidence            3578999999999999999999999999999997 55666554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.60  E-value=0.00023  Score=76.09  Aligned_cols=77  Identities=17%  Similarity=0.230  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      .+...+|...+..++|.+|.++++..++++|-....||++|.|..++++++.|..+|.+++.++|+| .++++.|...
T Consensus       486 rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~-~eaWnNls~a  562 (777)
T KOG1128|consen  486 RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN-AEAWNNLSTA  562 (777)
T ss_pred             HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc-hhhhhhhhHH
Confidence            3444445555567999999999999999999999999999999999999999999999999999998 4566665543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.59  E-value=0.00024  Score=70.93  Aligned_cols=105  Identities=18%  Similarity=0.227  Sum_probs=75.8

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+..-|+.+-..++|.+|...|.+|.++........         ....+|.+.+.|+.+. ++.+|+.++++|++
T Consensus        33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~---------~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~  102 (282)
T PF14938_consen   33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKF---------EAAKAYEEAANCYKKG-DPDEAIECYEKAIE  102 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HH---------HHHHHHHHHHHHHHHT-THHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHH---------HHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH
Confidence            3466666677777788999999999999988665432211         1256777888887666 88899999888887


Q ss_pred             hC--C----CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 008788          476 AN--P----AHVKGLYRRGMAYMAL-GEFEEAQRDFEMMMKV  510 (553)
Q Consensus       476 ~d--p----~n~ka~~r~g~a~~~l-g~~~~A~~~l~~al~l  510 (553)
                      +-  .    .-++++.++|.+|... ++++.|++.|++|+.+
T Consensus       103 ~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~  144 (282)
T PF14938_consen  103 IYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL  144 (282)
T ss_dssp             HHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            62  1    1266788888888888 8999999999998887

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.57  E-value=0.00022  Score=71.41  Aligned_cols=111  Identities=18%  Similarity=0.233  Sum_probs=86.7

Q ss_pred             hHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (553)
Q Consensus       393 e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  472 (553)
                      .+..+...+-+.||.+|-.|+|++|+..-+.-|.+......         +.....++.|+|.||.-+++++.|+++|.+
T Consensus       190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~  260 (639)
T KOG1130|consen  190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------RAAERRAHSNLGNCHIFLGNFELAIEHYKL  260 (639)
T ss_pred             hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence            34445566778999999999999999988887774332211         111246899999999999999999999998


Q ss_pred             HHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788          473 VLDAN------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (553)
Q Consensus       473 al~~d------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P  512 (553)
                      ++.+-      ...+..-|-+|.+|..+.+|+.|+.++++-|.+..
T Consensus       261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77552      22456689999999999999999999998887654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.55  E-value=0.0026  Score=57.41  Aligned_cols=102  Identities=19%  Similarity=0.304  Sum_probs=87.7

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp  478 (553)
                      ......|+.+...|+|.+|...|.+|+.-   +-..+           ...++.+|.+++..+++.+|....+++.+.+|
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG---~fA~d-----------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p  155 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSG---IFAHD-----------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP  155 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhcc---ccCCC-----------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence            34567889999999999999999999982   11222           46788999999999999999999999999988


Q ss_pred             C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          479 A--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       479 ~--n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      .  .+......|.++..+|.+.+|...|+.++.-.|+-
T Consensus       156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~  193 (251)
T COG4700         156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP  193 (251)
T ss_pred             ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence            4  57778888999999999999999999999999874

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.54  E-value=0.0018  Score=68.04  Aligned_cols=97  Identities=18%  Similarity=0.207  Sum_probs=82.2

Q ss_pred             hccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008788          405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL  484 (553)
Q Consensus       405 G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~  484 (553)
                      +....++|+++.|...|.+|.+    ..|++.          .......+..++..++++.|+..++++++.+|+|+.++
T Consensus       125 A~aA~~~g~~~~A~~~l~~A~~----~~~~~~----------~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al  190 (398)
T PRK10747        125 AEAAQQRGDEARANQHLERAAE----LADNDQ----------LPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVL  190 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHh----cCCcch----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence            4444789999999999999988    555441          12333458889999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          485 YRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       485 ~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      ..++.+|...|+|++|++.+.+..+..+.+.
T Consensus       191 ~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~  221 (398)
T PRK10747        191 RLAEQAYIRTGAWSSLLDILPSMAKAHVGDE  221 (398)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH
Confidence            9999999999999999999999988877653

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.53  E-value=0.0012  Score=70.83  Aligned_cols=68  Identities=18%  Similarity=0.231  Sum_probs=65.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      .-+++.+|++|..+|++.+|+.+.++||+..|..+..|+.+|+++.+.|++.+|.+.+..|-+||+.+
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D  261 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD  261 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence            45778999999999999999999999999999999999999999999999999999999999999986

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.50  E-value=0.00024  Score=45.78  Aligned_cols=33  Identities=21%  Similarity=0.371  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      .+++++|.+++++++|++|+.+++++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            478999999999999999999999999999976

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.49  E-value=0.0027  Score=60.14  Aligned_cols=55  Identities=20%  Similarity=0.297  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008788          447 NLLHLNVAACLLKLG---ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ  501 (553)
Q Consensus       447 ~~~~~nla~~~~kl~---~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~  501 (553)
                      ..++..+|..++-+|   ++.-|..++.++++++|.|..++|-.-.|..++-+...+.
T Consensus       188 ~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~~  245 (289)
T KOG3060|consen  188 PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKAE  245 (289)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHHH
Confidence            456667787777766   6888999999999999999999999988877766554443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.47  E-value=0.00019  Score=46.32  Aligned_cols=32  Identities=31%  Similarity=0.605  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      ++|+.+|.++..+|++++|++.|++|++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            57888888888888888888888888888874

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.47  E-value=0.0023  Score=54.71  Aligned_cols=66  Identities=18%  Similarity=0.168  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~---n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      .+++++|.++-.+|+..+|+..|.++++....   -..++..+|.++..+|++++|+..|++++.-.|+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            36789999999999999999999999997543   3679999999999999999999999999998887

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.41  E-value=0.0005  Score=58.25  Aligned_cols=62  Identities=21%  Similarity=0.250  Sum_probs=57.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       452 nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      .-|.+....++.+.|++.+.++|.+-|.++.||.+|++++...|+.++|++++++|++|.-.
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~  109 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD  109 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence            34666667899999999999999999999999999999999999999999999999999654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.40  E-value=0.0015  Score=65.61  Aligned_cols=103  Identities=22%  Similarity=0.221  Sum_probs=85.0

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-  477 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d-  477 (553)
                      ...-+.||.+.-.|+|+.|++.|++++.+...+.....|         +..++.+|..|.-+++|..||.+..+-|++- 
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE---------AQscYSLgNtytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE---------AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH---------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345688999999999999999999998865544433211         4566789999999999999999999977663 


Q ss_pred             -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          478 -----PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       478 -----p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                           -....|++-+|.+|..+|+.+.|+...++.+++
T Consensus       307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                 346789999999999999999999988888776

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.39  E-value=0.0024  Score=63.79  Aligned_cols=88  Identities=20%  Similarity=0.255  Sum_probs=65.8

Q ss_pred             CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY  491 (553)
Q Consensus       412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~  491 (553)
                      .++..|...|++..+    ..+.+           ..+++.+|.|++.+++|++|...+.+|+..+|+++.++.++..+.
T Consensus       181 e~~~~A~y~f~El~~----~~~~t-----------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~  245 (290)
T PF04733_consen  181 EKYQDAFYIFEELSD----KFGST-----------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS  245 (290)
T ss_dssp             TCCCHHHHHHHHHHC----CS--S-----------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHh----ccCCC-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            356777777776333    11222           456778899999999999999999999999999999999999999


Q ss_pred             HHcCCH-HHHHHHHHHHHHhCCCC
Q 008788          492 MALGEF-EEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       492 ~~lg~~-~~A~~~l~~al~l~P~~  514 (553)
                      ..+|+. +.+.+.+.+....+|++
T Consensus       246 ~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  246 LHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             HHhCCChhHHHHHHHHHHHhCCCC
Confidence            999888 66777888888888887

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.38  E-value=0.0006  Score=66.85  Aligned_cols=63  Identities=21%  Similarity=0.342  Sum_probs=59.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       451 ~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      --.|.-|+|+|.|++||++|.+++..+|.|+-.+-+||.||+++..|..|..++..|+.||-.
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~  163 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL  163 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence            356888999999999999999999999999999999999999999999999999999999853

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.006  Score=59.54  Aligned_cols=120  Identities=15%  Similarity=0.052  Sum_probs=89.8

Q ss_pred             CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY  491 (553)
Q Consensus       412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~  491 (553)
                      .+.+..+...+..|.    .+|.|           ..-|.-||..|+.++++..|...|.+|+++.|+|+..+--.|.++
T Consensus       136 ~~~~~l~a~Le~~L~----~nP~d-----------~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL  200 (287)
T COG4235         136 QEMEALIARLETHLQ----QNPGD-----------AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEAL  200 (287)
T ss_pred             ccHHHHHHHHHHHHH----hCCCC-----------chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            335555666666666    68877           557888999999999999999999999999999999999999998


Q ss_pred             HHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008788          492 MALG---EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSL  548 (553)
Q Consensus       492 ~~lg---~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~  548 (553)
                      +...   .-.+|...|++|+++||+| ..+...|..-. ..+..-++-...+..|++..+
T Consensus       201 ~~~a~~~~ta~a~~ll~~al~~D~~~-iral~lLA~~a-fe~g~~~~A~~~Wq~lL~~lp  258 (287)
T COG4235         201 YYQAGQQMTAKARALLRQALALDPAN-IRALSLLAFAA-FEQGDYAEAAAAWQMLLDLLP  258 (287)
T ss_pred             HHhcCCcccHHHHHHHHHHHhcCCcc-HHHHHHHHHHH-HHcccHHHHHHHHHHHHhcCC
Confidence            8764   4678999999999999997 33444443322 222233444556677766654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.33  E-value=0.002  Score=72.67  Aligned_cols=112  Identities=17%  Similarity=0.226  Sum_probs=90.2

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA--  476 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~--  476 (553)
                      ..++..|.+|-+.|++++|...|+++|+    .+|.+           ..+++|+|..|... +.++|+.++.+|+..  
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~----~D~~n-----------~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVK----ADRDN-----------PEIVKKLATSYEEE-DKEKAITYLKKAIYRFI  180 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHh----cCccc-----------HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999999999    77877           67888888888888 888888888888743  


Q ss_pred             ------------------CCCCHHHHHH--------HH------------HHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 008788          477 ------------------NPAHVKGLYR--------RG------------MAYMALGEFEEAQRDFEMMMKVDKSSEPDA  518 (553)
Q Consensus       477 ------------------dp~n~ka~~r--------~g------------~a~~~lg~~~~A~~~l~~al~l~P~~~~~~  518 (553)
                                        +|.+..-+++        ++            .+|...++|++++..|+.+|+++|.|.. +
T Consensus       181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~-a  259 (906)
T PRK14720        181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK-A  259 (906)
T ss_pred             hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh-h
Confidence                              4555444222        24            7888899999999999999999999854 6


Q ss_pred             HHHHHHHHH
Q 008788          519 TAALSKLKK  527 (553)
Q Consensus       519 ~~~l~~l~~  527 (553)
                      +..|..|-+
T Consensus       260 ~~~l~~~y~  268 (906)
T PRK14720        260 REELIRFYK  268 (906)
T ss_pred             HHHHHHHHH
Confidence            666666655

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.33  E-value=0.006  Score=59.77  Aligned_cols=104  Identities=18%  Similarity=0.214  Sum_probs=88.2

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      +.|.-+.+.+..+....+++.|+....+|+.    .+|..           +.+-.-+|..++..|+|..|++.+..+++
T Consensus       178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq----a~~~c-----------vRAsi~lG~v~~~~g~y~~AV~~~e~v~e  242 (389)
T COG2956         178 EIAQFYCELAQQALASSDVDRARELLKKALQ----ADKKC-----------VRASIILGRVELAKGDYQKAVEALERVLE  242 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh----hCccc-----------eehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence            3455566777777788889999999999988    55544           55667789999999999999999999999


Q ss_pred             hCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          476 ANPAHV-KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       476 ~dp~n~-ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      -||... ..+-.+..||.++|+.++.+..+.++.+..++.
T Consensus       243 Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~  282 (389)
T COG2956         243 QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA  282 (389)
T ss_pred             hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence            999764 567788999999999999999999999998874

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.30  E-value=0.0041  Score=60.49  Aligned_cols=70  Identities=13%  Similarity=0.096  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG---LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP  516 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka---~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~  516 (553)
                      ...++..|.-++..|+|.+|+..+++++...|...-+   .+.+|.+|+++++|++|+..+++.++++|+|..
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~  104 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN  104 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence            4456788888999999999999999999999987654   599999999999999999999999999999753

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.29  E-value=0.0058  Score=57.73  Aligned_cols=69  Identities=23%  Similarity=0.322  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      ...++..|..++..|+|.+|+..+++++...|..   .+|++.+|.+++..++|+.|+..|++.++..|++.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~   76 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP   76 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence            4567889999999999999999999999988754   68999999999999999999999999999999875

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.27  E-value=0.0011  Score=69.26  Aligned_cols=108  Identities=20%  Similarity=0.281  Sum_probs=90.9

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k  482 (553)
                      ..|-.|--.|+-..|+.+..+|+.    ..|...          -.-..|+|..+++-+-.-+|-...+++|.++-..+-
T Consensus       612 ~aglywr~~gn~~~a~~cl~~a~~----~~p~~~----------~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl  677 (886)
T KOG4507|consen  612 EAGLYWRAVGNSTFAIACLQRALN----LAPLQQ----------DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPL  677 (886)
T ss_pred             cccceeeecCCcHHHHHHHHHHhc----cChhhh----------cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCch
Confidence            455556678999999999999988    455321          124579999999999999999999999999988899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       483 a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      .+|-+|.++..|.+.+.|++.|+.|++++|++ ..+.+-|.++
T Consensus       678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~-~~~~~~l~~i  719 (886)
T KOG4507|consen  678 TFLSLGNAYLALKNISGALEAFRQALKLTTKC-PECENSLKLI  719 (886)
T ss_pred             HHHhcchhHHHHhhhHHHHHHHHHHHhcCCCC-hhhHHHHHHH
Confidence            99999999999999999999999999999997 5566655544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.0026  Score=66.50  Aligned_cols=110  Identities=18%  Similarity=0.212  Sum_probs=76.7

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~  479 (553)
                      .+..-|--++.-+++.+|.+.|.+|..    +++..           ..+|...|..+.-+++.++|+..+..|-++-|.
T Consensus       314 sW~aVg~YYl~i~k~seARry~SKat~----lD~~f-----------gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G  378 (611)
T KOG1173|consen  314 SWFAVGCYYLMIGKYSEARRYFSKATT----LDPTF-----------GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG  378 (611)
T ss_pred             chhhHHHHHHHhcCcHHHHHHHHHHhh----cCccc-----------cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence            355667777777888888888888877    55544           566777777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      ...-.+.+|.-|.+++++..|.+.|..|+.+.|++ +-+..++..+
T Consensus       379 ~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D-plv~~Elgvv  423 (611)
T KOG1173|consen  379 CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD-PLVLHELGVV  423 (611)
T ss_pred             CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-chhhhhhhhe
Confidence            77777777777777777777777777777777764 3344444433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.21  E-value=0.004  Score=66.06  Aligned_cols=94  Identities=18%  Similarity=0.251  Sum_probs=79.6

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k  482 (553)
                      ..|-.+-..++|.+|+++|+.|+.    +.+++           ..++..+|..+.+|++|+-....-.+.|+++|.+.-
T Consensus        80 v~gl~~R~dK~Y~eaiKcy~nAl~----~~~dN-----------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra  144 (700)
T KOG1156|consen   80 VLGLLQRSDKKYDEAIKCYRNALK----IEKDN-----------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA  144 (700)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHh----cCCCc-----------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH
Confidence            455555567889999999999999    77777           568888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (553)
Q Consensus       483 a~~r~g~a~~~lg~~~~A~~~l~~al~l~  511 (553)
                      .|+-.|.++..+|+|..|...++.-.+..
T Consensus       145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  145 SWIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999988877666654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.21  E-value=0.0036  Score=60.30  Aligned_cols=99  Identities=22%  Similarity=0.233  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHH
Q 008788          450 HLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP--DATAALSK  524 (553)
Q Consensus       450 ~~nla~~~~kl~~~~~A~~~~~~al~~dp~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~--~~~~~l~~  524 (553)
                      .+|.|.-+++.|+|..|...|..=+..-|++   +.|+|++|.+++.+|+|++|...|..+.+-.|++..  ++.--|..
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7899999999999999999999999998876   679999999999999999999999999999998753  22222223


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccC
Q 008788          525 LKKQRRKLKVRLENSLKGCLTRSLG  549 (553)
Q Consensus       525 l~~~~~~~~~~~~~~~~~mf~~~~~  549 (553)
                      +..++.. ...-+.+|..+-.+.+|
T Consensus       224 ~~~~l~~-~d~A~atl~qv~k~YP~  247 (262)
T COG1729         224 SLGRLGN-TDEACATLQQVIKRYPG  247 (262)
T ss_pred             HHHHhcC-HHHHHHHHHHHHHHCCC
Confidence            3322221 23334555555444443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.18  E-value=0.0037  Score=67.55  Aligned_cols=111  Identities=16%  Similarity=0.166  Sum_probs=91.4

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k  482 (553)
                      ..+..+.+.++-++|..+..+|-.    +.+           +.+..|+-+|.++...+++.+|.+.+..|+.+||+++.
T Consensus       655 laa~~~~~~~~~~~a~~CL~Ea~~----~~~-----------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~  719 (799)
T KOG4162|consen  655 LAADLFLLSGNDDEARSCLLEASK----IDP-----------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP  719 (799)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHh----cch-----------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH
Confidence            344444455666777777777665    222           34778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          483 GLYRRGMAYMALGEFEEAQR--DFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       483 a~~r~g~a~~~lg~~~~A~~--~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      +.--+|.++.++|+-.-|.+  .+..|+++||.| .+++-.|..+-+++
T Consensus       720 s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n-~eaW~~LG~v~k~~  767 (799)
T KOG4162|consen  720 SMTALAELLLELGSPRLAEKRSLLSDALRLDPLN-HEAWYYLGEVFKKL  767 (799)
T ss_pred             HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHc
Confidence            99999999999998888877  999999999998 67888887776554

>PRK10941 hypothetical protein; Provisional

Probab=97.16  E-value=0.0049  Score=60.47  Aligned_cols=70  Identities=17%  Similarity=0.198  Sum_probs=66.2

Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       445 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      .....+.|+=.+|++.++|..|++.++.+|.++|+++--+..||.+|.+++.+..|+.+|+..++.-|+.
T Consensus       179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d  248 (269)
T PRK10941        179 VIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED  248 (269)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence            4467888999999999999999999999999999999999999999999999999999999999999985

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.15  E-value=0.002  Score=46.25  Aligned_cols=42  Identities=21%  Similarity=0.299  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  489 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~  489 (553)
                      .+++.+|..+.++++|.+|.++|+.+|+++|+|..|.--+..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            377889999999999999999999999999999887654443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.07  E-value=0.0044  Score=68.70  Aligned_cols=74  Identities=26%  Similarity=0.350  Sum_probs=63.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE-FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~-~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      |--.+..++|++|++.|.++|+.||+|..|++-+|.|+..++. .++|.+.|..|.+++|+| .-+++-|-.+-.+
T Consensus         9 Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdn-lLAWkGL~nLye~   83 (1238)
T KOG1127|consen    9 AKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDN-LLAWKGLGNLYER   83 (1238)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhh-hHHHHHHHHHHHc
Confidence            3344567899999999999999999999999999999999998 999999999999999997 4566666555443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.0027  Score=61.28  Aligned_cols=93  Identities=22%  Similarity=0.343  Sum_probs=75.6

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      |....+.|..+|+.|+|+.|+++|+.|+.+    ....           ..+-+|+|+|+++.++|..|+++....++.-
T Consensus       144 Ad~~in~gCllykegqyEaAvqkFqaAlqv----sGyq-----------pllAYniALaHy~~~qyasALk~iSEIieRG  208 (459)
T KOG4340|consen  144 ADGQINLGCLLYKEGQYEAAVQKFQAALQV----SGYQ-----------PLLAYNLALAHYSSRQYASALKHISEIIERG  208 (459)
T ss_pred             cchhccchheeeccccHHHHHHHHHHHHhh----cCCC-----------chhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence            556778999999999999999999999993    2222           3466899999999999999999999988652


Q ss_pred             ----CC----------------C---------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788          478 ----PA----------------H---------VKGLYRRGMAYMALGEFEEAQRDFE  505 (553)
Q Consensus       478 ----p~----------------n---------~ka~~r~g~a~~~lg~~~~A~~~l~  505 (553)
                          |.                |         ..|+...+-++++.++++.|++.+.
T Consensus       209 ~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  209 IRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             hhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                11                1         3567777889999999999998764

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.03  E-value=0.015  Score=50.80  Aligned_cols=69  Identities=16%  Similarity=0.233  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~---n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      ..-+++.|...++.++|.+|++.+..+...-|-   ...|.+.++.+|+..++|++|+..+++-++|+|.|.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp   81 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP   81 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence            456788999999999999999999999998775   467899999999999999999999999999999975

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.03  E-value=0.0056  Score=52.33  Aligned_cols=82  Identities=16%  Similarity=0.286  Sum_probs=63.8

Q ss_pred             hHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008788          447 NLLHLNVAACLLKLG---ECRKSIEACNKVLD-ANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA  521 (553)
Q Consensus       447 ~~~~~nla~~~~kl~---~~~~A~~~~~~al~-~dp-~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~  521 (553)
                      ..+.+|+|.|+.+..   +-.+.+..+...++ -.| ..-..+|.+|..|.++++|+.|+.+++..|+.+|+|. .+..+
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~-Qa~~L  110 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR-QALEL  110 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH-HHHHH
Confidence            467889999998876   46778888888886 334 3567899999999999999999999999999999984 35443


Q ss_pred             HHHHHHHH
Q 008788          522 LSKLKKQR  529 (553)
Q Consensus       522 l~~l~~~~  529 (553)
                      -+.++.++
T Consensus       111 k~~ied~i  118 (149)
T KOG3364|consen  111 KETIEDKI  118 (149)
T ss_pred             HHHHHHHH
Confidence            33343333

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=0.0034  Score=61.96  Aligned_cols=86  Identities=21%  Similarity=0.275  Sum_probs=66.8

Q ss_pred             ccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008788          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR  487 (553)
Q Consensus       408 ~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~  487 (553)
                      +..+.+|..|+...+-++.       .++||+       ..+..-+|.|++.+|+|++|+..+.-+.+.+..+.+.+.++
T Consensus        32 fls~rDytGAislLefk~~-------~~~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnL   97 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLN-------LDREEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNL   97 (557)
T ss_pred             HHhcccchhHHHHHHHhhc-------cchhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhH
Confidence            4455677777766554443       222222       23445579999999999999999999999988899999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHH
Q 008788          488 GMAYMALGEFEEAQRDFEMM  507 (553)
Q Consensus       488 g~a~~~lg~~~~A~~~l~~a  507 (553)
                      |.|++-||.|.+|.....+|
T Consensus        98 Acc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   98 ACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999876665

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.95  E-value=0.028  Score=53.38  Aligned_cols=103  Identities=24%  Similarity=0.269  Sum_probs=78.0

Q ss_pred             hhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhh
Q 008788          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-------CRKSIEACNKVLDA  476 (553)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~-------~~~A~~~~~~al~~  476 (553)
                      .+..+-....+++|+..|.-|+-.........        ...+.+++.+|.+|..+++       +..|+..+.+|++.
T Consensus        83 ~~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~~--------s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~  154 (214)
T PF09986_consen   83 KPRDFSGERTLEEAIESYKLALLCAQIKKEKP--------SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN  154 (214)
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            33466677889999999999988655433322        1246789999999999998       45566666666655


Q ss_pred             CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          477 NP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       477 dp------~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ..      +....+|..|..+.++|++++|+.+|.+++..--.+
T Consensus       155 e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  155 EDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             CcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            42      236889999999999999999999999999865443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.95  E-value=0.0089  Score=61.93  Aligned_cols=105  Identities=17%  Similarity=0.149  Sum_probs=85.1

Q ss_pred             CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY  491 (553)
Q Consensus       412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~  491 (553)
                      ++++.|+..+++-..    .+|              ....-+|.+++.+++-.+|++..+++|..+|.+...+.-.|..+
T Consensus       183 ~~~~~ai~lle~L~~----~~p--------------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL  244 (395)
T PF09295_consen  183 QRYDEAIELLEKLRE----RDP--------------EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL  244 (395)
T ss_pred             ccHHHHHHHHHHHHh----cCC--------------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            456667666666444    232              23445788899999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 008788          492 MALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVR  535 (553)
Q Consensus       492 ~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~  535 (553)
                      ...++|+.|+...++|.++.|++ -..+..|.++--...+.+.+
T Consensus       245 l~k~~~~lAL~iAk~av~lsP~~-f~~W~~La~~Yi~~~d~e~A  287 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVELSPSE-FETWYQLAECYIQLGDFENA  287 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhcCCHHHH
Confidence            99999999999999999999996 45777787776666555544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=0.005  Score=65.08  Aligned_cols=104  Identities=17%  Similarity=0.215  Sum_probs=88.5

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      -..+.+.+..+|+..+|..|++.|...+.++..    | ++.    ....++..|++.||+++.+.+.|.+++..|-+.|
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~----D-~~~----~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d  424 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS----D-NYS----DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD  424 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc----h-hhh----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence            345778999999999999999999999996433    2 111    1236788999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      |.++=.-+..-++...-+.-++|+..+.+....
T Consensus       425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            999999999999999999999999988877654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.90  E-value=0.0025  Score=58.86  Aligned_cols=70  Identities=17%  Similarity=0.240  Sum_probs=66.7

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      ++.+++-+|..|-.+|-|.-|.-+++++|.+.|..+.++..+|.-+...|+|+.|.+.|...+++||.++
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~  133 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  133 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence            4678999999999999999999999999999999999999999999999999999999999999999864

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.90  E-value=0.0017  Score=41.80  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      .+|+++|.+|.+++++++|+.++.++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            478999999999999999999999999999964

...

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.89  E-value=0.0044  Score=61.82  Aligned_cols=67  Identities=18%  Similarity=0.242  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHH--cC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          449 LHLNVAACLLK--LG--ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       449 ~~~nla~~~~k--l~--~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      +..++|.+|..  .|  .+.+|...++......+.+++.+..+|.|++.+|+|++|.+.++.|+..+|++.
T Consensus       165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~  235 (290)
T PF04733_consen  165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP  235 (290)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence            44555554444  34  699999999998888788999999999999999999999999999999999863

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.0015  Score=61.14  Aligned_cols=61  Identities=13%  Similarity=0.216  Sum_probs=56.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      +.+++.-+.|..|+..+.+||.++|..+.-|-+++.||+++.+|+.+..+.++|++++|+.
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~   77 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL   77 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH
Confidence            4566677899999999999999999999999999999999999999999999999999974

>PRK15331 chaperone protein SicA; Provisional

Probab=96.86  E-value=0.022  Score=50.93  Aligned_cols=67  Identities=7%  Similarity=-0.109  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ...+..|.-++..|++++|...+.-...+||.|.+-++-+|-|+..+++|+.|+..|..|..+++++
T Consensus        38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d  104 (165)
T PRK15331         38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND  104 (165)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence            3455677788899999999999999999999999999999999999999999999999999997764

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.84  E-value=0.017  Score=61.53  Aligned_cols=124  Identities=15%  Similarity=0.110  Sum_probs=94.9

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHH-------------HHHhhhhh---------HHHHHHHHHHH
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-------------KVFVGKRN---------LLHLNVAACLL  458 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~-------------~~~~~~~~---------~~~~nla~~~~  458 (553)
                      +.-.+...+..|+...|.....+|++    .+|.+++-+             +..+.+..         .+|+..+..-.
T Consensus       587 wlM~ake~w~agdv~~ar~il~~af~----~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er  662 (913)
T KOG0495|consen  587 WLMYAKEKWKAGDVPAARVILDQAFE----ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLER  662 (913)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHH----hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHH
Confidence            44556667788999999999999988    455544321             11222221         35666666666


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       459 kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      -+++.++|++.|+++|+.-|+..|.|..+|+++.+.++.+.|++.|...++.=|... -.+-.|.+|..+.
T Consensus       663 ~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i-pLWllLakleEk~  732 (913)
T KOG0495|consen  663 YLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI-PLWLLLAKLEEKD  732 (913)
T ss_pred             HhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc-hHHHHHHHHHHHh
Confidence            688999999999999999999999999999999999999999999999999999874 3666677666554

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.039  Score=53.78  Aligned_cols=131  Identities=18%  Similarity=0.213  Sum_probs=94.4

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH------
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK------  472 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~------  472 (553)
                      +.....+..+...+++.+|...+..|+.    ..+.+           ..+..-+|.||+.+|+.+.|...+..      
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~----~~~~~-----------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~  199 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQ----AAPEN-----------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQ  199 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHH----hCccc-----------chHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence            3456778899999999999999999999    45544           34666778888888887554443332      


Q ss_pred             ----------------------------HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHH
Q 008788          473 ----------------------------VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-EPDATAALS  523 (553)
Q Consensus       473 ----------------------------al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~-~~~~~~~l~  523 (553)
                                                  .+..||++..+-|.+|..+...|++++|.+.|-..++.|-.. +..+++.|-
T Consensus       200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ll  279 (304)
T COG3118         200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL  279 (304)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence                                        224579999999999999999999999999999999886542 234555555


Q ss_pred             HHHHHHH----HHHHHHHHHHHhhc
Q 008788          524 KLKKQRR----KLKVRLENSLKGCL  544 (553)
Q Consensus       524 ~l~~~~~----~~~~~~~~~~~~mf  544 (553)
                      .+-....    ...+-.|++|+-||
T Consensus       280 e~f~~~g~~Dp~~~~~RRkL~slLy  304 (304)
T COG3118         280 ELFEAFGPADPLVLAYRRKLYSLLY  304 (304)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHhhC
Confidence            4433322    34455666666554

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.80  E-value=0.027  Score=52.87  Aligned_cols=129  Identities=19%  Similarity=0.206  Sum_probs=87.8

Q ss_pred             HHhhhcccccc-CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788          401 IRVTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       401 ~k~~G~~~~~~-g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~  479 (553)
                      +.+.|..+-.. .++++|+..|++|-+++..-..         ...-..|++..|.....+++|.+|++.+.++.+..-+
T Consensus       116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees---------~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~  186 (288)
T KOG1586|consen  116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES---------VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD  186 (288)
T ss_pred             hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33444444444 6788999999999887653211         1223568888888888899999999999998876544


Q ss_pred             C------HHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008788          480 H------VKGL-YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSL  540 (553)
Q Consensus       480 n------~ka~-~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~  540 (553)
                      |      +|-| +..|.||+-..+.-.|...+++-.+++|... +. ++-+.++..+...+++.-.+|
T Consensus       187 n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~-ds-REckflk~L~~aieE~d~e~f  252 (288)
T KOG1586|consen  187 NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT-DS-RECKFLKDLLDAIEEQDIEKF  252 (288)
T ss_pred             chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc-cc-HHHHHHHHHHHHHhhhhHHHH
Confidence            4      4554 4558899988999999999999999999852 22 233444444444444443333

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.79  E-value=0.025  Score=53.98  Aligned_cols=115  Identities=17%  Similarity=0.292  Sum_probs=85.8

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCC-------------CChhHHH-----------HHhh--hhhHHHHHH
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP-------------QDDEEGK-----------VFVG--KRNLLHLNV  453 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~-------------~~~ee~~-----------~~~~--~~~~~~~nl  453 (553)
                      .+....+.+...++|.-.+..|++.++.-...+|             .|.+..+           .+..  .....+.|.
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            3455666777777777777777776663211111             1111000           0111  123467889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      +..|+-.++|..|...+++.++.||.++-|..+.|.|++.+|+..+|++.++.++..+|..
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999984

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.76  E-value=0.011  Score=58.54  Aligned_cols=73  Identities=16%  Similarity=0.228  Sum_probs=56.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       451 ~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      +.+|-.+...-.|.+||+.+.++|.-+|+....-..+|.||.++.-|+-+.+.+.--|+--|++.  +...|+.|
T Consensus       155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt--iA~NLkac  227 (557)
T KOG3785|consen  155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST--IAKNLKAC  227 (557)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH--HHHHHHHH
Confidence            34455555666788999999999988887777777889999999999999999998898888863  44444444

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.76  E-value=0.018  Score=52.77  Aligned_cols=70  Identities=20%  Similarity=0.258  Sum_probs=61.7

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +-.+-++|..+.+.+.++.|+....+||.    ++|..           ..++..+|.+|-++.+|++|+.+|.++++.|
T Consensus       134 sIly~Nraaa~iKl~k~e~aI~dcsKaie----l~pty-----------~kAl~RRAeayek~ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  134 SILYSNRAAALIKLRKWESAIEDCSKAIE----LNPTY-----------EKALERRAEAYEKMEKYEEALEDYKKILESD  198 (271)
T ss_pred             HHHHhhhHHHHHHhhhHHHHHHHHHhhHh----cCchh-----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence            45567899999999999999999999999    77765           5677789999999999999999999999999


Q ss_pred             CCCHH
Q 008788          478 PAHVK  482 (553)
Q Consensus       478 p~n~k  482 (553)
                      |.+-.
T Consensus       199 Ps~~e  203 (271)
T KOG4234|consen  199 PSRRE  203 (271)
T ss_pred             cchHH
Confidence            97653

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.012  Score=59.40  Aligned_cols=100  Identities=20%  Similarity=0.188  Sum_probs=60.5

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~  479 (553)
                      .+.-.|..+|.+++|..|+..-.++|+    .++.+           +..|.--|..++.+++..+|+-+|+.|..+-|.
T Consensus       302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~----~~~r~-----------~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~  366 (564)
T KOG1174|consen  302 HWFVHAQLLYDEKKFERALNFVEKCID----SEPRN-----------HEALILKGRLLIALERHTQAVIAFRTAQMLAPY  366 (564)
T ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHHhc----cCccc-----------chHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence            344455555666666666666666666    44444           445555566666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ....|--+-.+|...+.+.+|...-+.++++-|.+
T Consensus       367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s  401 (564)
T KOG1174|consen  367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS  401 (564)
T ss_pred             hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc
Confidence            66666666666666666666666655555555554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.72  E-value=0.0093  Score=63.80  Aligned_cols=99  Identities=19%  Similarity=0.282  Sum_probs=79.6

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      +...|..+..+|+.++|+..|++|+.    .    ..+   +.++..-+++.++.|++-+.+|++|..++.+.++.+. .
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~----~----q~~---~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-W  337 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIE----S----QSE---WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-W  337 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhcc----c----hhh---HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-c
Confidence            55778888889999999999999885    1    122   3445577899999999999999999999999998654 5


Q ss_pred             HHHHHH--HHHHHHHcCCH-------HHHHHHHHHHHHhC
Q 008788          481 VKGLYR--RGMAYMALGEF-------EEAQRDFEMMMKVD  511 (553)
Q Consensus       481 ~ka~~r--~g~a~~~lg~~-------~~A~~~l~~al~l~  511 (553)
                      .+|+|.  .|.|+.++++.       ++|.+.|.++-.+-
T Consensus       338 Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  338 SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            676554  58999999999       88888888776654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.69  E-value=0.0027  Score=40.34  Aligned_cols=31  Identities=32%  Similarity=0.589  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       483 a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      |+|++|.++..+|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            6777777777777777777777777777775

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.66  E-value=0.002  Score=41.70  Aligned_cols=34  Identities=26%  Similarity=0.434  Sum_probs=30.4

Q ss_pred             HHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 008788          420 KYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE  468 (553)
Q Consensus       420 ~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~  468 (553)
                      +|++||+    ++|.+           ..+|+|+|.+|...|++++|++
T Consensus         1 ~y~kAie----~~P~n-----------~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIE----LNPNN-----------AEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHH----HCCCC-----------HHHHHHHHHHHHHCcCHHhhcC
Confidence            4889999    88988           7899999999999999999863

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.62  E-value=0.027  Score=51.53  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=79.8

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +....+.+..++..+++++|....+.++.     .+.|       ..+...+-.++|.+++.++++++|+...+..-.-+
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~-----~t~D-------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~  156 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALA-----QTKD-------ENLKALAALRLARVQLQQKKADAALKTLDTIKEES  156 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHc-----cchh-------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc
Confidence            33456778888999999999999999987     3444       22345677899999999999999998776543321


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                       -..-.--.+|.++...|+-++|+..|.+|+..+++
T Consensus       157 -w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         157 -WAAIVAELRGDILLAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             -HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence             11222456899999999999999999999999865

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.59  E-value=0.038  Score=58.31  Aligned_cols=127  Identities=14%  Similarity=0.225  Sum_probs=87.8

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-----  477 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d-----  477 (553)
                      +++-++|+.++.++|+..|+       .+++.+           ..+..-.|+.++++++|++|++.|...++.+     
T Consensus        84 EKAYc~Yrlnk~Dealk~~~-------~~~~~~-----------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d  145 (652)
T KOG2376|consen   84 EKAYCEYRLNKLDEALKTLK-------GLDRLD-----------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD  145 (652)
T ss_pred             HHHHHHHHcccHHHHHHHHh-------cccccc-----------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence            55666677777777777666       123333           2356667888889999999999998876332     


Q ss_pred             -------------------------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCChHHHHHHHHH
Q 008788          478 -------------------------P-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-------DKSSEPDATAALSK  524 (553)
Q Consensus       478 -------------------------p-~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l-------~P~~~~~~~~~l~~  524 (553)
                                               | +...-+|+.|.++...|+|.+|++.+++|+++       +-.++.++..+|.-
T Consensus       146 ~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~  225 (652)
T KOG2376|consen  146 EERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP  225 (652)
T ss_pred             HHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence                                     1 24567999999999999999999999999554       22234567777777


Q ss_pred             HHHHHH------HHHHHHHHHHHhhcccc
Q 008788          525 LKKQRR------KLKVRLENSLKGCLTRS  547 (553)
Q Consensus       525 l~~~~~------~~~~~~~~~~~~mf~~~  547 (553)
                      |+-++.      -+.++....|..+..+.
T Consensus       226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~  254 (652)
T KOG2376|consen  226 IRVQLAYVLQLQGQTAEASSIYVDIIKRN  254 (652)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence            765543      23444556677776553

>smart00028 TPR Tetratricopeptide repeats

Probab=96.56  E-value=0.0038  Score=38.57  Aligned_cols=32  Identities=34%  Similarity=0.720  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      .+++++|.++..+++++.|+.+|+++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            45666777777777777777777777766664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.51  E-value=0.038  Score=61.63  Aligned_cols=98  Identities=15%  Similarity=0.248  Sum_probs=85.8

Q ss_pred             HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCC
Q 008788          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEACNKVLDANPAH  480 (553)
Q Consensus       402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~-~~~A~~~~~~al~~dp~n  480 (553)
                      ...+.+....++|++|++.-+++++    .+|++           -.++.-+|.++..+++ .++|-.+|-.|.+++|+|
T Consensus         6 LK~Ak~al~nk~YeealEqskkvLk----~dpdN-----------YnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdn   70 (1238)
T KOG1127|consen    6 LKSAKDALRNKEYEEALEQSKKVLK----EDPDN-----------YNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDN   70 (1238)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHh----cCCCc-----------chhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhh
Confidence            3456667788999999999999999    78877           5688889999999998 999999999999999999


Q ss_pred             HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCC
Q 008788          481 VKGLYRRGMAYMA---LGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       481 ~ka~~r~g~a~~~---lg~~~~A~~~l~~al~l~P~~  514 (553)
                      .=||-.++..|..   .-+++++-..|.+++.+.|+.
T Consensus        71 lLAWkGL~nLye~~~dIl~ld~~~~~yq~~~l~le~q  107 (1238)
T KOG1127|consen   71 LLAWKGLGNLYERYNDILDLDRAAKCYQRAVLILENQ  107 (1238)
T ss_pred             hHHHHHHHHHHHccchhhhhhHhHHHHHHHHHhhhhh
Confidence            9999988888887   456889999999999888874

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.022  Score=56.12  Aligned_cols=68  Identities=16%  Similarity=0.140  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~----n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      .-|---|.-|+|.++|+.|+..|++.|+....    |+-.|.+||-|++.+|+|..|+.+..+|++++|.+-
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~  153 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL  153 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence            34445677889999999999999999988643    566799999999999999999999999999999874

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.41  E-value=0.032  Score=59.52  Aligned_cols=82  Identities=11%  Similarity=-0.014  Sum_probs=72.1

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      ...+|+-+|+.+-.+++.+.|...|..-++..|+.+-.|..+++.-...|+.-.|+..|.++..-+|.|. ..  .|..+
T Consensus       684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~-~l--wle~I  760 (913)
T KOG0495|consen  684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA-LL--WLESI  760 (913)
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc-hh--HHHHH
Confidence            4689999999999999999999999999999999999999999999999999999999999999999973 23  34445


Q ss_pred             HHHHH
Q 008788          526 KKQRR  530 (553)
Q Consensus       526 ~~~~~  530 (553)
                      +-.++
T Consensus       761 r~ElR  765 (913)
T KOG0495|consen  761 RMELR  765 (913)
T ss_pred             HHHHH
Confidence            44444

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.37  E-value=0.16  Score=52.81  Aligned_cols=93  Identities=13%  Similarity=0.002  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 008788          415 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL  494 (553)
Q Consensus       415 ~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~l  494 (553)
                      .+-...|++|+.    .-+.|           ..+|++...-..|.+.+.+.-..|.++|...|+|+..|...|.-.+..
T Consensus        88 ~rIv~lyr~at~----rf~~D-----------~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~  152 (568)
T KOG2396|consen   88 NRIVFLYRRATN----RFNGD-----------VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEI  152 (568)
T ss_pred             HHHHHHHHHHHH----hcCCC-----------HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhh
Confidence            344667888887    33444           678888776666777799999999999999999999999999999988


Q ss_pred             CC-HHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788          495 GE-FEEAQRDFEMMMKVDKSSEPDATAALS  523 (553)
Q Consensus       495 g~-~~~A~~~l~~al~l~P~~~~~~~~~l~  523 (553)
                      +. .+.|++.|.++|+.+|++. .++.+.=
T Consensus       153 n~ni~saRalflrgLR~npdsp-~Lw~eyf  181 (568)
T KOG2396|consen  153 NLNIESARALFLRGLRFNPDSP-KLWKEYF  181 (568)
T ss_pred             ccchHHHHHHHHHHhhcCCCCh-HHHHHHH
Confidence            76 9999999999999999984 4655443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.19  E-value=0.0098  Score=38.93  Aligned_cols=29  Identities=24%  Similarity=0.436  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (553)
Q Consensus       483 a~~r~g~a~~~lg~~~~A~~~l~~al~l~  511 (553)
                      ||.++|.+|..+|+|++|+..|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            57889999999999999999999976553

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.14  E-value=0.0044  Score=63.88  Aligned_cols=65  Identities=18%  Similarity=0.179  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       450 ~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      +-+-|.-+++-+.|+.|+..+.+||+++|+++..+-.|+.|+...++|..|+.|+.+|++++|..
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~   71 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY   71 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence            33556677889999999999999999999999999999999999999999999999999999974

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.12  E-value=0.045  Score=58.90  Aligned_cols=78  Identities=19%  Similarity=0.198  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      .+++..+.++...|++++|+++.......-.+....+-.+|.++..+|++++|...|+..++.+|+|. .-...|..+.
T Consensus         5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~-~Yy~~L~~~~   82 (517)
T PF12569_consen    5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY-DYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHHHHHHHHH
Confidence            45566777888999999999999998888888999999999999999999999999999999999974 4555555554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.11  E-value=0.2  Score=50.76  Aligned_cols=107  Identities=13%  Similarity=0.118  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (553)
Q Consensus       393 e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  472 (553)
                      .+...+......|-.-+-.|+|.+|.+...++-+.    .+..           ..+|+--|.+.-.+|++..|-.+..+
T Consensus        79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~----~e~p-----------~l~~l~aA~AA~qrgd~~~an~yL~e  143 (400)
T COG3071          79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEH----GEQP-----------VLAYLLAAEAAQQRGDEDRANRYLAE  143 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc----Ccch-----------HHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            34556777778888888899999999998886651    1111           22333334444444444444444444


Q ss_pred             HHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          473 VLDAN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       473 al~~d-p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      |-+.. .++.-.+..++..+...++++.|+..+..+++..|.+
T Consensus       144 aae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~  186 (400)
T COG3071         144 AAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRH  186 (400)
T ss_pred             HhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCC
Confidence            44441 1233344444444444444455554444444444444

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.10  E-value=0.084  Score=55.01  Aligned_cols=124  Identities=12%  Similarity=0.093  Sum_probs=86.9

Q ss_pred             CCCCChhhHHHHHHHHHhhhcc----cc-----ccCCHHHHHHHHHHHHHHhhccCCCCh------hHHHH--Hhhh--h
Q 008788          386 WTGLSFDGIMDEAEKIRVTGNR----LF-----KEGKFELAKAKYEKVLRDFNHVNPQDD------EEGKV--FVGK--R  446 (553)
Q Consensus       386 ~~~~~~~e~~~~a~~~k~~G~~----~~-----~~g~~~~A~~~Y~~Al~~l~~~~~~~~------ee~~~--~~~~--~  446 (553)
                      |.+.+...+++.|.+..+.-..    +.     ......+|.+.|++|++.-+..-..+.      ...+.  .++.  .
T Consensus       179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~  258 (539)
T PF04184_consen  179 WRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL  258 (539)
T ss_pred             HhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence            4466778888777665443322    21     124478999999999986543211110      01111  1111  2


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~--n~ka~~r~g~a~~~lg~~~~A~~~l~~al~  509 (553)
                      .-+...+|+|..++|+.++|++.+...++..|.  +...++.+-.|+..++.|.++.+.+.+-=.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            345578999999999999999999999988764  678999999999999999999999888643

The molecular function of this protein is uncertain.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.09  E-value=0.056  Score=57.11  Aligned_cols=111  Identities=18%  Similarity=0.244  Sum_probs=81.4

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHH-H-------------------HHhhhhhHHHHHHHHHHHHc
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-K-------------------VFVGKRNLLHLNVAACLLKL  460 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~-~-------------------~~~~~~~~~~~nla~~~~kl  460 (553)
                      +.-+|..+|+.++|++|+..|+.-++    -+.++.++. .                   +..+-...+++|.|..++..
T Consensus       113 l~L~AQvlYrl~~ydealdiY~~L~k----n~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~  188 (652)
T KOG2376|consen  113 LELRAQVLYRLERYDEALDIYQHLAK----NNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIEN  188 (652)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhc
Confidence            34578889999999999999998765    222221111 0                   00011235789999999999


Q ss_pred             CCHHHHHHHHHHHHhhC-------CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          461 GECRKSIEACNKVLDAN-------PAH--------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       461 ~~~~~A~~~~~~al~~d-------p~n--------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      |+|.+|++...+|+++.       -.+        .-....++.++..+|+-++|...|...++.+|.+.
T Consensus       189 gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  189 GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE  258 (652)
T ss_pred             ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence            99999999999995441       111        23466789999999999999999999999988643

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.06  E-value=0.054  Score=53.98  Aligned_cols=118  Identities=22%  Similarity=0.215  Sum_probs=88.7

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccC---------CC--Ch-hHHH----------------HHhhhhhH
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN---------PQ--DD-EEGK----------------VFVGKRNL  448 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~---------~~--~~-ee~~----------------~~~~~~~~  448 (553)
                      ++....+.|..+|...++++|+..+.+.|.-++...         +.  .+ -+.+                .--.....
T Consensus         5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667889999999999999999999887654321         10  00 0000                01122346


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAH-----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n-----~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ++.|++..+-++.+|.+++.+|..-+.+-...     ..++.-+|.||..++.|+.|++.|+.|+++.-++
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~  155 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN  155 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence            89999999999999999999999998874322     3567789999999999999999999999985543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.02  E-value=0.031  Score=54.43  Aligned_cols=69  Identities=19%  Similarity=0.203  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      +.+-+|.|.-..+.|+.++|...+..||+++|.|+.++.+.|....+-++.-+|-.+|-+||.++|.|.
T Consensus       116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns  184 (472)
T KOG3824|consen  116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS  184 (472)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence            345567777788899999999999999999999999999999999999999999999999999999974

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.00  E-value=0.27  Score=48.83  Aligned_cols=122  Identities=13%  Similarity=-0.007  Sum_probs=88.5

Q ss_pred             CCChhhHHHHHHHHHhhhccccccC-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 008788          388 GLSFDGIMDEAEKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  466 (553)
Q Consensus       388 ~~~~~e~~~~a~~~k~~G~~~~~~g-~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A  466 (553)
                      .+++......+..+.+.|..+++++ +|..|....++|+++++.... .+.......+++..++..++.+|+..+.++..
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~  103 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV  103 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            3456667778999999999999999 999999999999998755211 11111224556788999999999998876544


Q ss_pred             HHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788          467 IEACNKVLDA----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (553)
Q Consensus       467 ~~~~~~al~~----dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~  511 (553)
                      .+ |.++++.    -|+.+-.++-.=.++...++.+++.+.+.+++.--
T Consensus       104 ~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen  104 EK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence            33 5554433    46666666555666666788999999998888753

It is also involved in sporulation [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.98  E-value=0.013  Score=37.16  Aligned_cols=32  Identities=25%  Similarity=0.506  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      +++++|.|+.++|++.+|+..++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            67899999999999999999999999999864

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.95  E-value=0.013  Score=38.31  Aligned_cols=29  Identities=21%  Similarity=0.221  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          449 LHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +|.|+|.+|.++|+|++|+.++.++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            47899999999999999999999966543

>smart00028 TPR Tetratricopeptide repeats

Probab=95.92  E-value=0.013  Score=35.92  Aligned_cols=33  Identities=27%  Similarity=0.471  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      .+++++|.|+..++++.+|+..+.++++++|.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            468899999999999999999999999998853

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.91  E-value=0.014  Score=54.52  Aligned_cols=60  Identities=25%  Similarity=0.451  Sum_probs=56.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       456 ~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      ...+.++.+.|.+.+++||++-|.+...|||.|.-...-|+++.|.+.|++.|++||.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            345678999999999999999999999999999999999999999999999999999864

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.87  E-value=0.081  Score=53.45  Aligned_cols=96  Identities=22%  Similarity=0.215  Sum_probs=62.7

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~  479 (553)
                      ..-..+..+...|++++|.+.-..+++     ...++           .++.-.  -.++.+++..=++..++.++..|+
T Consensus       265 l~~~~a~~li~l~~~~~A~~~i~~~Lk-----~~~D~-----------~L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~  326 (400)
T COG3071         265 LVVAYAERLIRLGDHDEAQEIIEDALK-----RQWDP-----------RLCRLI--PRLRPGDPEPLIKAAEKWLKQHPE  326 (400)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHH-----hccCh-----------hHHHHH--hhcCCCCchHHHHHHHHHHHhCCC
Confidence            334556666778889999888888887     12221           111111  123556677777777777777777


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      ++..++.+|..++..+.|.+|...|+.|++..|+
T Consensus       327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s  360 (400)
T COG3071         327 DPLLLSTLGRLALKNKLWGKASEALEAALKLRPS  360 (400)
T ss_pred             ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence            7777777777777777777777777777777766

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.80  E-value=0.21  Score=51.59  Aligned_cols=124  Identities=19%  Similarity=0.146  Sum_probs=95.8

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      +...|.---.++++++|...|.+||.    .+..+           +.+++..|.|-+|.++...|....++|+.+-|.-
T Consensus        76 WikYaqwEesq~e~~RARSv~ERALd----vd~r~-----------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV  140 (677)
T KOG1915|consen   76 WIKYAQWEESQKEIQRARSVFERALD----VDYRN-----------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV  140 (677)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHh----ccccc-----------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence            33444444556778888888888888    44444           7899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 008788          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRR-KLKVRLENSLKGC  543 (553)
Q Consensus       481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~m  543 (553)
                      -+.||..-..-..||+..-|+..|.+=++..|+.+  ++  +.-++..++ ..-...+..|.+.
T Consensus       141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq--aW--~sfI~fElRykeieraR~IYerf  200 (677)
T KOG1915|consen  141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ--AW--LSFIKFELRYKEIERARSIYERF  200 (677)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH--HH--HHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999842  33  333333332 2223445566554

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.78  E-value=0.081  Score=50.09  Aligned_cols=132  Identities=11%  Similarity=0.080  Sum_probs=84.3

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH----HHhhC-
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK----VLDAN-  477 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~----al~~d-  477 (553)
                      +++-.....-+.+.|+..|++++.+++.-+.         ......++...+..+.+++.|.+|-..+.+    ++..+ 
T Consensus       115 eKAak~lenv~Pd~AlqlYqralavve~~dr---------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~  185 (308)
T KOG1585|consen  115 EKAAKALENVKPDDALQLYQRALAVVEEDDR---------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA  185 (308)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhccch---------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence            3444444555677777777777775443211         112246777888889999999998877766    33333 


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008788          478 -PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTR  546 (553)
Q Consensus       478 -p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~  546 (553)
                       +.-.|++.-.-.+|..+.+|..|..+++.+-++.--+.+   ..-+.|.+.+..+++.....+++|.+.
T Consensus       186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s---ed~r~lenLL~ayd~gD~E~~~kvl~s  252 (308)
T KOG1585|consen  186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS---EDSRSLENLLTAYDEGDIEEIKKVLSS  252 (308)
T ss_pred             cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh---HHHHHHHHHHHHhccCCHHHHHHHHcC
Confidence             444566666666677778999999999998877543322   123445555666666666666666554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.72  E-value=0.21  Score=47.94  Aligned_cols=70  Identities=14%  Similarity=0.160  Sum_probs=63.9

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~---n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      -..-+++-|+..+..|+|.+|+..++.+....|.   ..++...++.|+++-++|++|+..+.+-+++.|.+.
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~  105 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP  105 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence            3567889999999999999999999999988764   478999999999999999999999999999999874

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.69  E-value=0.16  Score=46.78  Aligned_cols=94  Identities=31%  Similarity=0.541  Sum_probs=69.5

Q ss_pred             cccccCCHHHHHHHHHHHHHHhhccCCC-ChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHH
Q 008788          407 RLFKEGKFELAKAKYEKVLRDFNHVNPQ-DDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-HVKGL  484 (553)
Q Consensus       407 ~~~~~g~~~~A~~~Y~~Al~~l~~~~~~-~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~-n~ka~  484 (553)
                      .++..+++..|+..|.+++.    ..+. ..         ....+.+++..+...+++..|+..+.+++...+. ...++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~----~~~~~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  205 (291)
T COG0457         139 ALYELGDYEEALELYEKALE----LDPELNE---------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEAL  205 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHh----cCCCccc---------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHH
Confidence            77788999999999999866    3331 10         1234444444466777888888888888888887 67888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          485 YRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       485 ~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      +.++.++...++++.|+..+..++...|.
T Consensus       206 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         206 LNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            88888888888888888888888888876

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=95.50  E-value=0.2  Score=54.22  Aligned_cols=111  Identities=8%  Similarity=-0.057  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHhhccCCCChhH-------HHHHhhhhhHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhh--C
Q 008788          415 ELAKAKYEKVLRDFNHVNPQDDEE-------GKVFVGKRNLLHLNVAACLLKLG--------ECRKSIEACNKVLDA--N  477 (553)
Q Consensus       415 ~~A~~~Y~~Al~~l~~~~~~~~ee-------~~~~~~~~~~~~~nla~~~~kl~--------~~~~A~~~~~~al~~--d  477 (553)
                      -.|..+|-+|..++....+.+-..       .-.+......+|.-++.||....        +...+.+...+++.+  +
T Consensus       337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~  416 (517)
T PRK10153        337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL  416 (517)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC
Confidence            478888888888765444322111       11223334456677777776543        234556666666664  7


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~  527 (553)
                      +..+.+|.-+|..+...|++++|...|++|+.++|+  ..+...+.++..
T Consensus       417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~  464 (517)
T PRK10153        417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS--WLNYVLLGKVYE  464 (517)
T ss_pred             cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHH
Confidence            888899999999999999999999999999999995  345555555443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.39  E-value=0.039  Score=54.97  Aligned_cols=99  Identities=20%  Similarity=0.212  Sum_probs=80.8

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA---  479 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~---  479 (553)
                      ..|+.+...+.|++|++.|++|+++........         +...++..++..+-.++++++|+-+..+|+++-.+   
T Consensus       127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~---------LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l  197 (518)
T KOG1941|consen  127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAM---------LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL  197 (518)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce---------eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc
Confidence            478888888999999999999999755432111         22457888999999999999999999999987421   


Q ss_pred             ---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          480 ---H----VKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       480 ---n----~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                         +    .-++|+++.++..+|+.-+|.++.+.|.+|
T Consensus       198 ~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  198 KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence               2    347899999999999999999999999887

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.38  E-value=0.16  Score=46.66  Aligned_cols=102  Identities=30%  Similarity=0.406  Sum_probs=81.2

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA-CLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~-~~~kl~~~~~A~~~~~~al~  475 (553)
                      ....+...|......+++..|+..+.+++.    ..+.+           ......... ++...+++..|+..+.+++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  158 (291)
T COG0457          94 LAEALLNLGLLLEALGKYEEALELLEKALA----LDPDP-----------DLAEALLALGALYELGDYEEALELYEKALE  158 (291)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHc----CCCCc-----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            345566778888888889999999999988    44433           112223333 88899999999999999999


Q ss_pred             hCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          476 ANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       476 ~dp---~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      .+|   .....++.++..+...++++.|+..+.+++...+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            887   56777888888888999999999999999999987

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=95.36  E-value=0.063  Score=48.62  Aligned_cols=52  Identities=21%  Similarity=0.352  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCC
Q 008788          463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE----------FEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       463 ~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~----------~~~A~~~l~~al~l~P~~  514 (553)
                      |+.|++.+..+...||.++.+|+|-|-|+.+|.+          +++|+.-|+.||.|+|+.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~   68 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK   68 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch
Confidence            7899999999999999999999999999998855          477899999999999985

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.30  E-value=0.21  Score=40.35  Aligned_cols=63  Identities=25%  Similarity=0.365  Sum_probs=49.0

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHH
Q 008788          466 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-EPDATAALSKLKKQ  528 (553)
Q Consensus       466 A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~-~~~~~~~l~~l~~~  528 (553)
                      .+..+.++++.+|++..+.|.+|.++...|++++|++.|-.+++.+++. +..+++.+-.+=..
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~   70 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL   70 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH
Confidence            4567888999999999999999999999999999999999999999875 23455555444333

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.15  E-value=0.28  Score=47.19  Aligned_cols=65  Identities=18%  Similarity=0.268  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          450 HLNVAACLLKL----GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       450 ~~nla~~~~kl----~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ++.||.+|.++    +++.+|.-.|...-+.-+.++..+...+.|++.+++|++|...++.||.-+++.
T Consensus       172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d  240 (299)
T KOG3081|consen  172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD  240 (299)
T ss_pred             HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence            33455555553    246666666666666455566777777777777777777777777777766654

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=95.04  E-value=0.093  Score=54.24  Aligned_cols=132  Identities=11%  Similarity=0.105  Sum_probs=79.3

Q ss_pred             HHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHH
Q 008788          421 YEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA-LGEFEE  499 (553)
Q Consensus       421 Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~-lg~~~~  499 (553)
                      |..||+.++.++.....-........+.+++..|-||+.+++|.+|++.++.+|-.-......+..+..-+-. .+..|.
T Consensus       138 Y~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eq  217 (404)
T PF10255_consen  138 YYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQ  217 (404)
T ss_pred             HHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHH
Confidence            4455555555544221111122333467889999999999999999999999886543222233344333333 456677


Q ss_pred             HHHHHHHHHHhCCCC-hHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccccCCCC
Q 008788          500 AQRDFEMMMKVDKSS-EPDATAALSK-LKKQRRKLKVRLENSLKGCLTRSLGKFL  552 (553)
Q Consensus       500 A~~~l~~al~l~P~~-~~~~~~~l~~-l~~~~~~~~~~~~~~~~~mf~~~~~~~~  552 (553)
                      ....+--|+.+.|.. +..+...++. ...++.+-.+..-..|..+|....=+|+
T Consensus       218 MyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~acPKFI  272 (404)
T PF10255_consen  218 MYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFACPKFI  272 (404)
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhCCCcc
Confidence            888888899998852 1223333332 2223333333355688899988777765

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.95  E-value=0.17  Score=59.12  Aligned_cols=100  Identities=16%  Similarity=0.061  Sum_probs=64.6

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA---  479 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~---  479 (553)
                      ..|..++..|++.+|...|.+|+..........         ....++.++|.+++..|++.+|...+.+++.+-..   
T Consensus       496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~---------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~  566 (903)
T PRK04841        496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYH---------YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL  566 (903)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchH---------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence            445555566777777777777666433222111         11345677888888888888888888888775211   


Q ss_pred             -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788          480 -----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (553)
Q Consensus       480 -----n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~  511 (553)
                           ..-++..+|.++...|++++|...+.+++.+.
T Consensus       567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence                 12334566777888888888888888887763

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.94  E-value=0.14  Score=49.88  Aligned_cols=63  Identities=13%  Similarity=0.187  Sum_probs=56.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~  509 (553)
                      +....|.|-..+|.++|++|++-++.|++..--++-.-|..|.||++.++|+.|++.....++
T Consensus       144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie  206 (459)
T KOG4340|consen  144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE  206 (459)
T ss_pred             cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            456788888889999999999999999999998999999999999999999999987765554

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.90  E-value=0.77  Score=43.42  Aligned_cols=110  Identities=15%  Similarity=0.208  Sum_probs=75.4

Q ss_pred             HHHHHHHHHhhhcccc-ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788          394 IMDEAEKIRVTGNRLF-KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (553)
Q Consensus       394 ~~~~a~~~k~~G~~~~-~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  472 (553)
                      +.+.|..+..++...| -+++|..|-..|-+|.++.-.....+|         ...+|.-.+.||-+ .+..+|+....+
T Consensus        29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhD---------aat~YveA~~cykk-~~~~eAv~cL~~   98 (288)
T KOG1586|consen   29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHD---------AATTYVEAANCYKK-VDPEEAVNCLEK   98 (288)
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchh---------HHHHHHHHHHHhhc-cChHHHHHHHHH
Confidence            3444444444444444 567788888888888775444443332         25678888888855 499999999999


Q ss_pred             HHhhCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC
Q 008788          473 VLDANPA------HVKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       473 al~~dp~------n~ka~~r~g~a~~~-lg~~~~A~~~l~~al~l~P~  513 (553)
                      ++++-.+      -++-+..+|..|.. |.+++.|+.+|++|-+.-..
T Consensus        99 aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~  146 (288)
T KOG1586|consen   99 AIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG  146 (288)
T ss_pred             HHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence            9988543      24455667777775 58999999999999887543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.81  E-value=0.14  Score=42.57  Aligned_cols=103  Identities=13%  Similarity=0.183  Sum_probs=68.5

Q ss_pred             hhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHH----HHHcCCHHHHHHHHHHHHhhCCC
Q 008788          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC----LLKLGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~----~~kl~~~~~A~~~~~~al~~dp~  479 (553)
                      ++..+|.+|++-+|++.-+..+.    .+..+...+ .+......++..+|..    -.|..-...+++.+.++..+.|.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~----~h~~~~~~~-~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~   76 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLIS----RHGEDESSW-LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD   76 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHH----HccCCCchH-HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence            46678999999999999999887    444332111 1111122222222211    01111255688888899999998


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (553)
Q Consensus       480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~  511 (553)
                      .+..+|.+|.=+-....|+++..-.+++|.+.
T Consensus        77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            88888888888777788888888888888763

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=94.76  E-value=0.19  Score=49.08  Aligned_cols=83  Identities=20%  Similarity=0.229  Sum_probs=68.4

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (553)
                      ...|......+....+.|+.++|...|..|+.    +.|.+           ..++..++...-..++.-+|-.+|.+||
T Consensus       113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAla----laP~~-----------p~~L~e~G~f~E~~~~iv~ADq~Y~~AL  177 (472)
T KOG3824|consen  113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALA----LAPTN-----------PQILIEMGQFREMHNEIVEADQCYVKAL  177 (472)
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHh----cCCCC-----------HHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence            34455555667788899999999999999999    78877           4567777777767788889999999999


Q ss_pred             hhCCCCHHHHHHHHHHHH
Q 008788          475 DANPAHVKGLYRRGMAYM  492 (553)
Q Consensus       475 ~~dp~n~ka~~r~g~a~~  492 (553)
                      .++|.|.+|+.+|+...-
T Consensus       178 tisP~nseALvnR~RT~p  195 (472)
T KOG3824|consen  178 TISPGNSEALVNRARTTP  195 (472)
T ss_pred             eeCCCchHHHhhhhccch
Confidence            999999999999987543

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.74  E-value=0.011  Score=58.51  Aligned_cols=59  Identities=22%  Similarity=0.345  Sum_probs=54.8

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       457 ~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      .+..|.+..|+++|..++.++|.++-.|-.|+.++..|++...|++++..|++++|+..
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa  182 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA  182 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc
Confidence            33568899999999999999999999999999999999999999999999999999753

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.67  E-value=0.26  Score=47.80  Aligned_cols=70  Identities=23%  Similarity=0.332  Sum_probs=64.7

Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       445 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ....+..|+=..++..++|..|.....+.|.++|.++-.+-.+|.+|.++|.+.-|+.++...++.-|+.
T Consensus       179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~  248 (269)
T COG2912         179 ILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD  248 (269)
T ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence            3456778888889999999999999999999999999999999999999999999999999999998874

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=94.62  E-value=0.13  Score=54.34  Aligned_cols=119  Identities=15%  Similarity=0.175  Sum_probs=87.6

Q ss_pred             ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008788          410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  489 (553)
Q Consensus       410 ~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~  489 (553)
                      -+|+..+|+.+|..|+.+...   ..          ....++.+|..+.++|...+|--....|+.--+.-..-+|.++.
T Consensus       225 ~~G~~~~A~~Ca~~a~hf~~~---h~----------kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~  291 (886)
T KOG4507|consen  225 IKGEPYQAVECAMRALHFSSR---HN----------KDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGN  291 (886)
T ss_pred             HcCChhhhhHHHHHHhhhCCc---cc----------ccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHH
Confidence            578999999999999985322   11          13467889999999999888888888888777766667999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 008788          490 AYMALGEFEEAQRDFEMMMKVDKSSEPDA--TAALSKLKKQRRKLKVRLENSLK  541 (553)
Q Consensus       490 a~~~lg~~~~A~~~l~~al~l~P~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~  541 (553)
                      ++.++++|.....+|..+++++|.....+  ++..-.|..++.+..+|+++..+
T Consensus       292 i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~  345 (886)
T KOG4507|consen  292 IYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQ  345 (886)
T ss_pred             HHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999754322  22233444444444444443333

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.59  E-value=0.21  Score=38.68  Aligned_cols=68  Identities=16%  Similarity=0.242  Sum_probs=53.6

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+....+.|..+|...+.++|+..+++||+-    .+..++        +-.++--++.+|..+|+|.+++++..+=+++
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k----~~~~~~--------rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEK----ITDRED--------RFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhh----cCChHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667778999999999999999999999993    332211        2456667888899999999999998776654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.58  E-value=0.3  Score=57.11  Aligned_cols=104  Identities=15%  Similarity=0.157  Sum_probs=79.7

Q ss_pred             HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---
Q 008788          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP---  478 (553)
Q Consensus       402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp---  478 (553)
                      ...|..++..|++.+|...+.+++..........       ......++.++|.++...|++++|...+.+++.+..   
T Consensus       535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~  607 (903)
T PRK04841        535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ-------LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ  607 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc-------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC
Confidence            3456677889999999999999998655432111       001133466789999999999999999999987632   


Q ss_pred             --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788          479 --AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (553)
Q Consensus       479 --~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P  512 (553)
                        ....++..+|.++...|++++|.+.+.+++.+.+
T Consensus       608 ~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        608 PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence              2356677789999999999999999999987643

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=94.58  E-value=0.18  Score=42.47  Aligned_cols=118  Identities=19%  Similarity=0.200  Sum_probs=80.3

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH----HHh
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK----VLD  475 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~----al~  475 (553)
                      ++-..|+..++.+++-.|+-.|++|+...+.+...++.+.+.+--..+..+.|+|.-+..+|+.+-.+++..-    ++.
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            3456788999999999999999999998777644343333334444566788999999999999988888764    556


Q ss_pred             hCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          476 ANPAHVKGLYRRGMA-YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a-~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      +-|.-++.   ...+ -..+|--..|+-+|   ++-.|+  +.+.+.++.+
T Consensus        83 LiPQCp~~---~C~afi~sLGCCk~ALl~F---~KRHPN--P~iA~~vq~i  125 (140)
T PF10952_consen   83 LIPQCPNT---ECEAFIDSLGCCKKALLDF---MKRHPN--PEIARLVQHI  125 (140)
T ss_pred             hccCCCCc---chHHHHHhhhccHHHHHHH---HHhCCC--HHHHHHHHhc
Confidence            66654432   2223 22456555666555   456786  4566665544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.54  E-value=0.47  Score=49.18  Aligned_cols=99  Identities=16%  Similarity=0.154  Sum_probs=73.0

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+.-.+....++.+...|.+..-.||-    .-|.+            .++-..-..-+++++++.|...+.+-|+
T Consensus       402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG----~cPK~------------KlFk~YIelElqL~efDRcRkLYEkfle  465 (677)
T KOG1915|consen  402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIG----KCPKD------------KLFKGYIELELQLREFDRCRKLYEKFLE  465 (677)
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHhc----cCCch------------hHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3444444555555566666666666666666    33433            1222222334578999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      ..|.|.-+|...|..-..||+.+.|++.|.-|++-
T Consensus       466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q  500 (677)
T KOG1915|consen  466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQ  500 (677)
T ss_pred             cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999864

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.43  E-value=0.11  Score=53.88  Aligned_cols=97  Identities=11%  Similarity=0.064  Sum_probs=74.3

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHH-HhhccCCC-C-hhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLR-DFNHVNPQ-D-DEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~-~l~~~~~~-~-~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (553)
                      +-.+.+.|..+|+.+.|..+...|.+||+ .+..+... . .............+++|.+..|+..|++..|.+.+.++.
T Consensus       283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av  362 (696)
T KOG2471|consen  283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV  362 (696)
T ss_pred             heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence            33445899999999999999999999996 43322111 0 000011222335688999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHc
Q 008788          475 DANPAHVKGLYRRGMAYMAL  494 (553)
Q Consensus       475 ~~dp~n~ka~~r~g~a~~~l  494 (553)
                      ..-..|+..|.|+|.|.++.
T Consensus       363 ~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  363 HVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHhcCcHHHHHHHHHHHHH
Confidence            99999999999999998864

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.39  E-value=0.087  Score=35.15  Aligned_cols=29  Identities=17%  Similarity=0.195  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+++|+|.+|..+|+|.+|+..+.+++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            46777888888888888888888777765

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.34  E-value=0.98  Score=46.72  Aligned_cols=74  Identities=19%  Similarity=0.215  Sum_probs=59.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHH
Q 008788          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS---EPDATAALSKLKKQRR  530 (553)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~---~~~~~~~l~~l~~~~~  530 (553)
                      |.-++..|+|.+|.-++.-+.+++| ++.+|.-+|.|++...+|++|..+|...   -|++   +..+++++..|.+.+.
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqKAl~lCqKh~~  544 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQKALALCQKHLP  544 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHHHHHHHHHhhh
Confidence            4556678999999999999999999 9999999999999999999999998754   3321   2346677777776654


Q ss_pred             H
Q 008788          531 K  531 (553)
Q Consensus       531 ~  531 (553)
                      .
T Consensus       545 k  545 (549)
T PF07079_consen  545 K  545 (549)
T ss_pred             h
Confidence            3

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.26  E-value=0.9  Score=50.63  Aligned_cols=89  Identities=22%  Similarity=0.246  Sum_probs=65.8

Q ss_pred             cccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHH
Q 008788          409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-NPAHVKGLYRR  487 (553)
Q Consensus       409 ~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-dp~n~ka~~r~  487 (553)
                      ...++|..|+....+.++    ..|..           ..+..--|+.+.++|++++|. -|-+++.. -+++--.+--+
T Consensus        20 ld~~qfkkal~~~~kllk----k~Pn~-----------~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~D~~tLq~l   83 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLK----KHPNA-----------LYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGTDDLTLQFL   83 (932)
T ss_pred             hhhHHHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCCchHHHHHH
Confidence            345677888877777776    45543           334445677888999999999 55555554 34566667777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          488 GMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       488 g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      -.||..++++++|...|++++..+|+
T Consensus        84 ~~~y~d~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   84 QNVYRDLGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence            88899999999999999999999998

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=94.25  E-value=0.29  Score=55.45  Aligned_cols=63  Identities=13%  Similarity=0.056  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      ..|..+..++.+.++++.|...++++++++|++...|..+..+|...|++++|.+.++...+.
T Consensus       495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            467777777888999999999999999999999999999999999999999999999877654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.24  E-value=0.84  Score=44.03  Aligned_cols=68  Identities=21%  Similarity=0.251  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCC
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ-RDFEMMMKVDKSS  514 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~-~~l~~al~l~P~~  514 (553)
                      ..+++-.|.|++.+++|++|......||..+++.+.++-++-.+-..+|.-.++. +.+.+....+|.+
T Consensus       207 ~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h  275 (299)
T KOG3081|consen  207 PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH  275 (299)
T ss_pred             hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence            3567889999999999999999999999999999999999999999999876666 4556666678876

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.19  E-value=0.33  Score=44.62  Aligned_cols=100  Identities=18%  Similarity=0.159  Sum_probs=75.8

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      ...+.+.|+.+++.|+++.|++.|.++.+++..            .......++++..+.+-.++|..+..+..+|-.+-
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            456778999999999999999999998885322            12246788888888899999999999999987664


Q ss_pred             CC----CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788          478 PA----HV--KGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (553)
Q Consensus       478 p~----n~--ka~~r~g~a~~~lg~~~~A~~~l~~al~  509 (553)
                      ..    ..  +.-...|.+++..++|..|-..|-.++.
T Consensus       104 ~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  104 EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence            32    12  2233347777788899999888876654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.06  E-value=0.67  Score=45.55  Aligned_cols=72  Identities=18%  Similarity=0.230  Sum_probs=66.4

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          439 GKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       439 ~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      ...+.+....++..++..+...++++.++.+.++.+.++|-+.++|.++-.+|...|+...|+..|++.-++
T Consensus       145 R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         145 RRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            455667778899999999999999999999999999999999999999999999999999999999988773

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.05  E-value=0.4  Score=40.25  Aligned_cols=72  Identities=18%  Similarity=0.235  Sum_probs=56.2

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      +--....+...|+|++++..-.+||.|++....-++++.+.+    +.+-+++|.++--+|+.++|+..++.+-++
T Consensus        58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW----IaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW----IAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH----HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            334556677889999999999999999998766666666655    567789999999999999999999988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=93.86  E-value=0.75  Score=45.74  Aligned_cols=87  Identities=10%  Similarity=0.040  Sum_probs=69.4

Q ss_pred             CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788          413 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLDANPAHVKGLYRRGMAY  491 (553)
Q Consensus       413 ~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~  491 (553)
                      ..+.|...|.+|++    .....           ..+|...|..-.. .++.+.|...++.+++.-|.+...|.....-+
T Consensus        16 g~~~aR~vF~~a~~----~~~~~-----------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen   16 GIEAARKVFKRARK----DKRCT-----------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHC----CCCS------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHc----CCCCC-----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            38889999999975    22211           4577777877556 56777799999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC
Q 008788          492 MALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       492 ~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ..+++.+.|+..|++++..-|..
T Consensus        81 ~~~~d~~~aR~lfer~i~~l~~~  103 (280)
T PF05843_consen   81 IKLNDINNARALFERAISSLPKE  103 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCTSSCH
T ss_pred             HHhCcHHHHHHHHHHHHHhcCch
Confidence            99999999999999999987764

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.78  E-value=0.34  Score=47.17  Aligned_cols=76  Identities=18%  Similarity=0.181  Sum_probs=65.1

Q ss_pred             CCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          433 PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM  508 (553)
Q Consensus       433 ~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al  508 (553)
                      ++-+++.+-+..+...++.-.|..|+..+.+.+|+.+|++++.+||-+...++-+-..+..+|+--.|...|++..
T Consensus       265 ~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         265 PWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            3444556667777778888889999999999999999999999999999999999999999999888888877653

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.38  E-value=0.21  Score=42.98  Aligned_cols=41  Identities=20%  Similarity=0.246  Sum_probs=36.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR  487 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~  487 (553)
                      ..|.+.+|..|.++++|+.++++++..|+.+|+|..|.-..
T Consensus        71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            45778899999999999999999999999999998775443

>PLN03218 maturation of RBCL 1; Provisional

Probab=93.34  E-value=1.9  Score=50.88  Aligned_cols=59  Identities=10%  Similarity=0.001  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          450 HLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMM  508 (553)
Q Consensus       450 ~~nla~~~~kl~~~~~A~~~~~~al~~d-p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al  508 (553)
                      |+.+..+|.+.+++++|.+.+...++.. +.+...|..+..+|.+.|++++|++.|+...
T Consensus       652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~  711 (1060)
T PLN03218        652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK  711 (1060)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            3344444444444444444444444332 1234444444455555555555555554443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.34  E-value=2.8  Score=40.09  Aligned_cols=99  Identities=12%  Similarity=0.073  Sum_probs=65.1

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-----  477 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d-----  477 (553)
                      .-++.+-..++|++|..+..+|++..+.-....         .-+..|-..++..-.+..|.++..++++|..+-     
T Consensus        36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslf---------hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs  106 (308)
T KOG1585|consen   36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF---------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS  106 (308)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH---------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC
Confidence            334444466888888888888887544321111         124566677777778889999999999988773     


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      |+-+..-..+|--..+-.+.++|+..|++++.+
T Consensus       107 pdtAAmaleKAak~lenv~Pd~AlqlYqralav  139 (308)
T KOG1585|consen  107 PDTAAMALEKAAKALENVKPDDALQLYQRALAV  139 (308)
T ss_pred             cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence            333333333333344556788999999998887

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.03  E-value=0.36  Score=49.07  Aligned_cols=97  Identities=14%  Similarity=0.175  Sum_probs=77.7

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN--  477 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d--  477 (553)
                      .+.+.|..+...|++..|+++|.+|-+++...            +..+..+.|+-.+-+-+++|.....+.++|...-  
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~------------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~  219 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSA------------KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA  219 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcch------------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence            35577888888999999999999988876542            1235678888888888999999999999988761  


Q ss_pred             ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          478 ------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMM  508 (553)
Q Consensus       478 ------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al  508 (553)
                            .-.+++....|.|++.+++|..|.++|-.+-
T Consensus       220 ~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  220 NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                  1245677788999999999999999887653

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.91  E-value=1.6  Score=43.55  Aligned_cols=104  Identities=19%  Similarity=0.160  Sum_probs=60.1

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCCh----------------h-----HHHHHhh------hhhHHHH
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD----------------E-----EGKVFVG------KRNLLHL  451 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~----------------e-----e~~~~~~------~~~~~~~  451 (553)
                      +.+-..+..++.+|++.+|...+.+.|+.    .|.+-                +     -.+++..      ...-++-
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d----~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~G  179 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDKLLDD----YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHG  179 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHHHHHh----CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHH
Confidence            44556677788999999999999998873    23220                0     0000000      0011122


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788          452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM  506 (553)
Q Consensus       452 nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~  506 (553)
                      -+|.|+...|-|.+|.+.+++++++|+.+.-|....+.++...+++.++++...+
T Consensus       180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            3455666666666666666666666666666666666666666666666665543

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.88  E-value=0.19  Score=33.26  Aligned_cols=30  Identities=20%  Similarity=0.272  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (553)
Q Consensus       482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~  511 (553)
                      .+|.++|.+.+...+|+.|+.+|++||++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            468889999999999999999999998763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.80  E-value=0.14  Score=52.96  Aligned_cols=118  Identities=16%  Similarity=0.100  Sum_probs=78.6

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC--
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-AN--  477 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~-~d--  477 (553)
                      +.-+.+..|-.|+|..|.+.....-.   ...+..   ...-+-....+++|++..++.++.|..++.++.+||+ .+  
T Consensus       243 l~LKsq~eY~~gn~~kA~KlL~~sni---~~~~g~---~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q  316 (696)
T KOG2471|consen  243 LLLKSQLEYAHGNHPKAMKLLLVSNI---HKEAGG---TITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ  316 (696)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHhccc---ccccCc---cccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence            33455566666666666655443211   011110   0000111234578999999999999999999999996 21  


Q ss_pred             ---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          478 ---------------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       478 ---------------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                                     ......+|+.|..|.+.|+.-.|.++|.+|.+.--.| +.+|-.|..|
T Consensus       317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n-PrlWLRlAEc  378 (696)
T KOG2471|consen  317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN-PRLWLRLAEC  378 (696)
T ss_pred             HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence                           1245679999999999999999999999999986665 3365555544

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.73  E-value=0.91  Score=46.38  Aligned_cols=113  Identities=15%  Similarity=0.124  Sum_probs=78.1

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHH-Hhhcc-CCCChh-----------------HHHHHhhhhhHHHHHHHHHHHHc-
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLR-DFNHV-NPQDDE-----------------EGKVFVGKRNLLHLNVAACLLKL-  460 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~-~l~~~-~~~~~e-----------------e~~~~~~~~~~~~~nla~~~~kl-  460 (553)
                      ..+.++.+..+|+..+|+...+..+. .+... .+....                 ...........+++-+|.-...+ 
T Consensus       187 ~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~  266 (352)
T PF02259_consen  187 FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY  266 (352)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc
Confidence            33556666677777888888888777 33321 000000                 01122334456777777776677 


Q ss_pred             -----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 008788          461 -----GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF-----------------EEAQRDFEMMMKVDKS  513 (553)
Q Consensus       461 -----~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~-----------------~~A~~~l~~al~l~P~  513 (553)
                           +.+++++..+..|+.++|.+.++|+..|..+..+=+.                 ..|+..|-+|+.+.+.
T Consensus       267 ~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  267 SKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             cccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                 8899999999999999999999999999988775332                 3478888888888876

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PLN03218 maturation of RBCL 1; Provisional

Probab=92.72  E-value=1.9  Score=50.88  Aligned_cols=62  Identities=11%  Similarity=0.044  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          449 LHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~d-p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      .|+.+-.+|.+.|++++|++.++...+.+ +.+...|..+..+|.+.|++++|++.|+...+.
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            55666666777777777777777777665 345566666677777777777777777766654

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.57  E-value=1.3  Score=46.24  Aligned_cols=120  Identities=18%  Similarity=0.190  Sum_probs=71.0

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC--C-----HHHHH
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--E-----CRKSI  467 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~--~-----~~~A~  467 (553)
                      +.......+.|-.+|..|+|.+|+..|+..|..+.-+.-.+.+|..+++++...|.-.+-.+.+.+.  .     .++..
T Consensus       201 l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~k  280 (422)
T PF06957_consen  201 LSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQK  280 (422)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH
Confidence            3444455667999999999999999999999876655555555556666665554333322222221  1     22333


Q ss_pred             HHHHHHHhh-----CCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          468 EACNKVLDA-----NPAHVKGLYRRG-MAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       468 ~~~~~al~~-----dp~n~ka~~r~g-~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      +.+..|.-.     .|.+.-.-.|.| ...+++++|.-|...-++.|++.|..
T Consensus       281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~  333 (422)
T PF06957_consen  281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP  333 (422)
T ss_dssp             HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence            444444432     232222223333 34557899999999999999999985

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.46  E-value=0.3  Score=32.45  Aligned_cols=30  Identities=30%  Similarity=0.396  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      +.++..+|.+|..+|+|++|+..+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357889999999999999999999999875

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.10  E-value=0.73  Score=37.44  Aligned_cols=63  Identities=13%  Similarity=0.204  Sum_probs=42.6

Q ss_pred             cccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       409 ~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      .+.++|..|++.+.+..++.........      ......+.+|+|.++...|++++|+..+++|+++-
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            4679999999999998885332211110      11223456778888888888888888888887663

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.04  E-value=5  Score=39.78  Aligned_cols=99  Identities=16%  Similarity=0.278  Sum_probs=71.8

Q ss_pred             ccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh----CC---C
Q 008788          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDA----NP---A  479 (553)
Q Consensus       408 ~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~----dp---~  479 (553)
                      ..++|+++.|...|.|+=..+....|..       ....+..++|.|...++.+ ++++|+...++|+++    ..   .
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~-------~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~   75 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDM-------AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL   75 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHH-------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence            3578999999999999977654444433       2234678999999999999 999999999999988    21   1


Q ss_pred             -------CHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCC
Q 008788          480 -------HVKGLYRRGMAYMALGEFEEAQR---DFEMMMKVDKS  513 (553)
Q Consensus       480 -------n~ka~~r~g~a~~~lg~~~~A~~---~l~~al~l~P~  513 (553)
                             ..+.+.-++.+|...+.++...+   .++.+-+-.|+
T Consensus        76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~  119 (278)
T PF08631_consen   76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN  119 (278)
T ss_pred             CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC
Confidence                   24567778999999888765444   33334333454

It is also involved in sporulation [].

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=91.98  E-value=0.75  Score=37.38  Aligned_cols=57  Identities=18%  Similarity=0.336  Sum_probs=46.9

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCC----CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          457 LLKLGECRKSIEACNKVLDANP----AH-----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       457 ~~kl~~~~~A~~~~~~al~~dp----~n-----~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      .++.++|.+|++...+.++.-.    ..     .-|+..+|..+..+|++++|+..++.|+++...
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            4578999999888888776632    12     467889999999999999999999999998554

>PLN03077 Protein ECB2; Provisional

Probab=91.70  E-value=2.4  Score=49.28  Aligned_cols=62  Identities=13%  Similarity=0.082  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~  509 (553)
                      .+|..+-.++...++.+.+...++++++++|++...|..++.+|...|+|++|.+..+...+
T Consensus       658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            34444444455678888888889999999999999999999999999999999988876654

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=91.66  E-value=1.7  Score=41.45  Aligned_cols=120  Identities=14%  Similarity=0.120  Sum_probs=71.1

Q ss_pred             ccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHH-HH-HHHHHHHHhh--CCCCHHH
Q 008788          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR-KS-IEACNKVLDA--NPAHVKG  483 (553)
Q Consensus       408 ~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~-~A-~~~~~~al~~--dp~n~ka  483 (553)
                      +|..|+|+.|++.-.-||+.=. .-|+.  -........+.-..+.|....+.|+.- -. ...+..+..-  -|+.+.|
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l-~~Pd~--f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA  169 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGL-TMPDQ--FRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA  169 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCC-CCCcc--ccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence            4567999999999999988311 11211  001122223344556666666777521 11 1122222111  1455555


Q ss_pred             HHH--HHHHHH---------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 008788          484 LYR--RGMAYM---------ALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKL  532 (553)
Q Consensus       484 ~~r--~g~a~~---------~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~  532 (553)
                      -+.  .|.++.         ..++...|+..|++|++++|+  ..+++.+++|.++++..
T Consensus       170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k--~GVK~~i~~l~~~lr~~  227 (230)
T PHA02537        170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK--CGVKKDIERLERRLKAL  227 (230)
T ss_pred             HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC--CChHHHHHHHHHHHhhc
Confidence            444  455552         345788999999999999997  46888899998888743

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.40  E-value=3.1  Score=43.45  Aligned_cols=98  Identities=19%  Similarity=0.251  Sum_probs=72.9

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL-DA  476 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al-~~  476 (553)
                      +....-.|-....-+.|+.|...|..|.+..+.            +++.+.+..|+|..|++.++-..    +.+++ .+
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i  430 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAED----LYKALDLI  430 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHH----HHHHHHhc
Confidence            444556677777778889999999988884332            23457789999999999776443    22333 23


Q ss_pred             CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788          477 NPAH----------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (553)
Q Consensus       477 dp~n----------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~  511 (553)
                      .|.|          ..++|-.|.-.+..+++.||+..+++.|+..
T Consensus       431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            4442          4578999999999999999999999999987

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=91.09  E-value=1  Score=39.65  Aligned_cols=63  Identities=14%  Similarity=0.215  Sum_probs=50.9

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (553)
                      ....+...+..+...|++.+|+..+++++.    .+|.+           ..+|..+-.||..+|++.+|++.|.+.-
T Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~----~dP~~-----------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   61 YLDALERLAEALLEAGDYEEALRLLQRALA----LDPYD-----------EEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----HSTT------------HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            455667777788899999999999999999    78877           4578888999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=91.02  E-value=1.6  Score=48.79  Aligned_cols=112  Identities=17%  Similarity=0.132  Sum_probs=82.1

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k  482 (553)
                      -.|-.+++.|++++|..+ -+|+.   ...+.+           ...+--+-.||..++++++|...+.+++..+|+ .+
T Consensus        48 LkaLsl~r~gk~~ea~~~-Le~~~---~~~~~D-----------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-ee  111 (932)
T KOG2053|consen   48 LKALSLFRLGKGDEALKL-LEALY---GLKGTD-----------DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EE  111 (932)
T ss_pred             HHHHHHHHhcCchhHHHH-Hhhhc---cCCCCc-----------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HH
Confidence            345667788888888833 33343   233333           234556788999999999999999999999998 99


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008788          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRR  530 (553)
Q Consensus       483 a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~  530 (553)
                      .++.+=.||.+-++|.+-.+.--+..+.-|++.--.+..+..+-+-+.
T Consensus       112 ll~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~  159 (932)
T KOG2053|consen  112 LLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIF  159 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhcc
Confidence            999999999999999877666666666778875555665555554443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=90.91  E-value=2.2  Score=44.87  Aligned_cols=101  Identities=17%  Similarity=0.144  Sum_probs=73.2

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-NPA  479 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-dp~  479 (553)
                      .+..+.++.+.|+.++|++.|+.-++.    .|..+         ...++.|+..|++.++.|.++-....+-=++ -|.
T Consensus       262 KrRLAmCarklGr~~EAIk~~rdLlke----~p~~~---------~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk  328 (539)
T PF04184_consen  262 KRRLAMCARKLGRLREAIKMFRDLLKE----FPNLD---------NLNIRENLIEALLELQAYADVQALLAKYDDISLPK  328 (539)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhh----CCccc---------hhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence            456778888999999999999998873    33221         1458999999999999999988887775333 256


Q ss_pred             CHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCC
Q 008788          480 HVKGLYRRGMAYMA-LGE---------------FEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       480 n~ka~~r~g~a~~~-lg~---------------~~~A~~~l~~al~l~P~~  514 (553)
                      .+...|..|....+ .++               -..|++.+.+|.+.+|..
T Consensus       329 SAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV  379 (539)
T PF04184_consen  329 SATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV  379 (539)
T ss_pred             hHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence            66666666554433 121               234778899999999974

The molecular function of this protein is uncertain.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=90.55  E-value=2.4  Score=48.00  Aligned_cols=88  Identities=11%  Similarity=0.081  Sum_probs=51.8

Q ss_pred             hccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHH
Q 008788          405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKG  483 (553)
Q Consensus       405 G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d-p~n~ka  483 (553)
                      -+.|.+.|++++|...|++.       ...+           ...|+.+..+|.+.|++++|+..+++..+.. .-+...
T Consensus       266 i~~y~k~g~~~~A~~vf~~m-------~~~~-----------~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t  327 (697)
T PLN03081        266 IDMYSKCGDIEDARCVFDGM-------PEKT-----------TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT  327 (697)
T ss_pred             HHHHHHCCCHHHHHHHHHhC-------CCCC-----------hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence            34556778888887777642       1112           3456666666666666666666666654432 124445


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          484 LYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       484 ~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      |..+..++.++|++++|.+.+..+++.
T Consensus       328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~  354 (697)
T PLN03081        328 FSIMIRIFSRLALLEHAKQAHAGLIRT  354 (697)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHh
Confidence            566666666666666666666666554

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=90.55  E-value=3.2  Score=33.40  Aligned_cols=64  Identities=20%  Similarity=0.214  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcC
Q 008788          418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH--VKGLYRRGMAYMALG  495 (553)
Q Consensus       418 ~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n--~ka~~r~g~a~~~lg  495 (553)
                      +...++++.    .+|.+           ..+.+.+|.+++..|++++|++.+-.++..++++  -.+--.+-.++..+|
T Consensus         8 ~~al~~~~a----~~P~D-----------~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg   72 (90)
T PF14561_consen    8 IAALEAALA----ANPDD-----------LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG   72 (90)
T ss_dssp             HHHHHHHHH----HSTT------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence            445666676    67777           5788999999999999999999999999999866  333333334444444


Q ss_pred             C
Q 008788          496 E  496 (553)
Q Consensus       496 ~  496 (553)
                      .
T Consensus        73 ~   73 (90)
T PF14561_consen   73 P   73 (90)
T ss_dssp             T
T ss_pred             C
Confidence            4

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.48  E-value=2.4  Score=45.68  Aligned_cols=69  Identities=22%  Similarity=0.190  Sum_probs=61.8

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp------~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      .+.++.|.|.-++++++|..+++.|...|..-|      ..+|....++.||..|.+.|.|++.++.|-+.+|.+
T Consensus       353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~  427 (872)
T KOG4814|consen  353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS  427 (872)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc
Confidence            456778999999999999999999999997754      347888889999999999999999999999999986

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=90.42  E-value=4  Score=43.81  Aligned_cols=67  Identities=18%  Similarity=0.206  Sum_probs=56.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~----n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      .-.++..|..+...++.++|++.+++++.....    ..=++|.+|-++..+.+|++|..+|.+.++.+.-
T Consensus       267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W  337 (468)
T PF10300_consen  267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW  337 (468)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence            446778899999999999999999999964332    2346899999999999999999999999987654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=90.41  E-value=5.3  Score=47.03  Aligned_cols=66  Identities=15%  Similarity=0.011  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      ..|..|+-.|.+-+.+++|.+.++.-++.--...+.|.+.|..+++.++-++|+..+++||+--|.
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            356667888888889999999999888877778899999999999999999999999999999887

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=90.30  E-value=3.5  Score=42.55  Aligned_cols=101  Identities=14%  Similarity=0.202  Sum_probs=73.8

Q ss_pred             cCCHHHHHHHHHHHHHHhhccCCCChhHHHH--HhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------
Q 008788          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKV--FVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA------------  476 (553)
Q Consensus       411 ~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~--~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~------------  476 (553)
                      ...|.++...|..|+...   +|..  -...  ....-+..++.++.++..+|++..|.+.+++||-.            
T Consensus         7 s~~Y~~~q~~F~~~v~~~---Dp~~--l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~   81 (360)
T PF04910_consen    7 SKAYQEAQEQFYAAVQSH---DPNA--LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPF   81 (360)
T ss_pred             CHHHHHHHHHHHHHHHcc---CHHH--HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            456777888888777621   1110  0001  11112678899999999999999999999998821            


Q ss_pred             --C------------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 008788          477 --N------------PAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP  516 (553)
Q Consensus       477 --d------------p~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~  516 (553)
                        +            +.|   ..|+||....+.+.|-|.-|++..+-.+.|||.+++
T Consensus        82 ~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP  138 (360)
T PF04910_consen   82 RSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP  138 (360)
T ss_pred             hcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence              1            112   468999999999999999999999999999999443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.06  E-value=7.4  Score=41.69  Aligned_cols=116  Identities=18%  Similarity=0.263  Sum_probs=72.7

Q ss_pred             CchhHHHHHHhcCCCCcEEEEEeCCCCcccCCCCCCCCCCCCeEEEEEEEeeeecCCCCCCCChhhHHHHHHHHHhhhcc
Q 008788          328 LVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNR  407 (553)
Q Consensus       328 ~v~~g~e~~l~~M~~GE~~~~~~~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~  407 (553)
                      +.-..|..++..|.++....+.+..-|                                   ..+..++.|...+..|..
T Consensus       256 qaq~~F~~av~~~d~n~v~~lL~ssPY-----------------------------------HvdsLLqva~~~r~qgD~  300 (665)
T KOG2422|consen  256 QAQRDFYLAVIVHDPNNVLILLISSPY-----------------------------------HVDSLLQVADIFRFQGDR  300 (665)
T ss_pred             HHHHHHHHHHhhcCCcceeeeeccCCc-----------------------------------chhHHHHHHHHHHHhcch
Confidence            356788889999988888877764322                                   234456777777777777


Q ss_pred             ccccCCHHHHHHHHHHHHHHhhcc------CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C
Q 008788          408 LFKEGKFELAKAKYEKVLRDFNHV------NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-H  480 (553)
Q Consensus       408 ~~~~g~~~~A~~~Y~~Al~~l~~~------~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~-n  480 (553)
                      -..++-.++|+-.+.+|+.-.=..      -|....+...+   .. +++..-..+.+.|+|.-|.++|...+.+||. +
T Consensus       301 e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~F---yL-~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eD  376 (665)
T KOG2422|consen  301 EMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQF---YL-ALFRYMQSLAQRGCWRTALEWCKLLLSLDPSED  376 (665)
T ss_pred             hhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHH---HH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCC
Confidence            776677777777777776521000      01111122221   12 2222333445789999999999999999997 5


Q ss_pred             HH
Q 008788          481 VK  482 (553)
Q Consensus       481 ~k  482 (553)
                      +-
T Consensus       377 Pl  378 (665)
T KOG2422|consen  377 PL  378 (665)
T ss_pred             ch
Confidence            43

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.00  E-value=1.3  Score=43.99  Aligned_cols=89  Identities=17%  Similarity=0.209  Sum_probs=62.0

Q ss_pred             ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHH
Q 008788          410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLY  485 (553)
Q Consensus       410 ~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~----n~ka~~  485 (553)
                      ..|-|.+|.+.-++|++    +++.+           .-+....|.++-..++++++.++..+--.....    ...-|.
T Consensus       187 E~g~y~dAEk~A~ralq----iN~~D-----------~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyW  251 (491)
T KOG2610|consen  187 ECGIYDDAEKQADRALQ----INRFD-----------CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYW  251 (491)
T ss_pred             HhccchhHHHHHHhhcc----CCCcc-----------hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhH
Confidence            34667777777777776    55554           344556677777789999999988765444321    234577


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH--HhCCC
Q 008788          486 RRGMAYMALGEFEEAQRDFEMMM--KVDKS  513 (553)
Q Consensus       486 r~g~a~~~lg~~~~A~~~l~~al--~l~P~  513 (553)
                      .-|.+|.+-++|+.|++.|.+-+  +++.+
T Consensus       252 H~Al~~iE~aeye~aleIyD~ei~k~l~k~  281 (491)
T KOG2610|consen  252 HTALFHIEGAEYEKALEIYDREIWKRLEKD  281 (491)
T ss_pred             HHHHhhhcccchhHHHHHHHHHHHHHhhcc
Confidence            78999999999999999997654  34443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=89.93  E-value=9.1  Score=35.19  Aligned_cols=93  Identities=17%  Similarity=0.162  Sum_probs=67.7

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      +...++.+|..+++..|....++..+    .+|...         ...-.+.+|..+.-+|++.+|...++.++..-| .
T Consensus       127 lLglA~Aqfa~~~~A~a~~tLe~l~e----~~pa~r---------~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g  192 (251)
T COG4700         127 LLGLAQAQFAIQEFAAAQQTLEDLME----YNPAFR---------SPDGHLLFARTLAAQGKYADAESAFEVAISYYP-G  192 (251)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHhh----cCCccC---------CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-C
Confidence            45666777777777777777666555    344220         022345567778889999999999999999988 6


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788          481 VKGLYRRGMAYMALGEFEEAQRDFEMM  507 (553)
Q Consensus       481 ~ka~~r~g~a~~~lg~~~~A~~~l~~a  507 (553)
                      +.+..+.+.-+..+|+.++|.+-+...
T Consensus       193 ~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         193 PQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            677777889999999888887666544

>PRK10941 hypothetical protein; Provisional

Probab=89.76  E-value=2.5  Score=41.57  Aligned_cols=78  Identities=15%  Similarity=0.149  Sum_probs=64.3

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp  478 (553)
                      .-+.+.-..+.+.++|..|+++-++.+.    +.|++.           .-+.-+|.+|.+++++..|+.+++.-++..|
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~----l~P~dp-----------~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P  246 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQ----FDPEDP-----------YEIRDRGLIYAQLDCEHVALSDLSYFVEQCP  246 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHH----hCCCCH-----------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence            3445666677899999999999999998    788773           3345689999999999999999999999999


Q ss_pred             CCHHHHHHHHHHH
Q 008788          479 AHVKGLYRRGMAY  491 (553)
Q Consensus       479 ~n~ka~~r~g~a~  491 (553)
                      +.+.+-.-+.+..
T Consensus       247 ~dp~a~~ik~ql~  259 (269)
T PRK10941        247 EDPISEMIRAQIH  259 (269)
T ss_pred             CchhHHHHHHHHH
Confidence            9988876665544

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.72  E-value=1.6  Score=33.78  Aligned_cols=36  Identities=25%  Similarity=0.352  Sum_probs=30.8

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV  431 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~  431 (553)
                      +.|..+-.++..+=+.|+|.+|+.+|++|++.|...
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~   39 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI   39 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            456777788899999999999999999999987653

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=89.63  E-value=6.3  Score=39.98  Aligned_cols=125  Identities=14%  Similarity=0.096  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 008788          419 AKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA-CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF  497 (553)
Q Consensus       419 ~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~-~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~  497 (553)
                      ..|++.++    .+|.+-+.+-.+..+.-.+...... --....-.+..+..+.+||+.+|++.+.+..+-.+..++.+-
T Consensus         6 ~el~~~v~----~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~   81 (321)
T PF08424_consen    6 AELNRRVR----ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS   81 (321)
T ss_pred             HHHHHHHH----hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence            34666676    6787754443332222222110000 001112256677888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccc
Q 008788          498 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKL-KVRLENSLKGCLTRS  547 (553)
Q Consensus       498 ~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~mf~~~  547 (553)
                      +...+-+++++..+|++..-....|..+....... -..-+++|.+++..+
T Consensus        82 ~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L  132 (321)
T PF08424_consen   82 EKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL  132 (321)
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence            99999999999999987432233333333322211 234455666655543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=89.53  E-value=0.69  Score=43.57  Aligned_cols=59  Identities=24%  Similarity=0.319  Sum_probs=52.1

Q ss_pred             cccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       407 ~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      .+++.++...|.+.|.+|+.    +-|..           ..-|+.++....|.+++..|.+.+.++|++||.+
T Consensus         4 ~~~~~~D~~aaaely~qal~----lap~w-----------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           4 MLAESGDAEAAAELYNQALE----LAPEW-----------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hhcccCChHHHHHHHHHHhh----cCchh-----------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            45678999999999999999    66654           5678999999999999999999999999999865

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=89.40  E-value=0.88  Score=44.76  Aligned_cols=73  Identities=12%  Similarity=0.106  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR-RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA  520 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r-~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~  520 (553)
                      ..+|...+....+.+.|.+.-..|.++|...|.|+..|.. .+.-+...++++.|++.|.++|+++|++. .++-
T Consensus       107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p-~iw~  180 (435)
T COG5191         107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP-RIWI  180 (435)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc-hHHH
Confidence            4677777777778889999999999999999999999877 56667788999999999999999999974 3543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=89.04  E-value=4.5  Score=41.24  Aligned_cols=107  Identities=16%  Similarity=0.130  Sum_probs=77.0

Q ss_pred             cccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008788          407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR  486 (553)
Q Consensus       407 ~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r  486 (553)
                      ..+..|+|+.|++..+....... +.+ +     ..+..+..++...|+..+. -+...|..+..+++++.|+.+-+-.-
T Consensus       197 ~r~~~gdWd~AlkLvd~~~~~~v-ie~-~-----~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~  268 (531)
T COG3898         197 ARCAAGDWDGALKLVDAQRAAKV-IEK-D-----VAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVV  268 (531)
T ss_pred             HHHhcCChHHHHHHHHHHHHHHh-hch-h-----hHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHH
Confidence            44567888888888776554211 111 1     1122234455555544433 46899999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788          487 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (553)
Q Consensus       487 ~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~  523 (553)
                      -+.++++-|+..++-..++.+-+.+|+  +++.....
T Consensus       269 AAralf~d~~~rKg~~ilE~aWK~ePH--P~ia~lY~  303 (531)
T COG3898         269 AARALFRDGNLRKGSKILETAWKAEPH--PDIALLYV  303 (531)
T ss_pred             HHHHHHhccchhhhhhHHHHHHhcCCC--hHHHHHHH
Confidence            999999999999999999999999997  34554433

>PLN03077 Protein ECB2; Provisional

Probab=88.77  E-value=3.7  Score=47.73  Aligned_cols=26  Identities=12%  Similarity=0.184  Sum_probs=20.6

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHH
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLR  426 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~  426 (553)
                      +......+.+.|+.++|+..|++..+
T Consensus       557 ~n~lI~~~~~~G~~~~A~~lf~~M~~  582 (857)
T PLN03077        557 WNILLTGYVAHGKGSMAVELFNRMVE  582 (857)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44566777888999999999998665

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.68  E-value=7.7  Score=35.87  Aligned_cols=96  Identities=14%  Similarity=0.214  Sum_probs=67.5

Q ss_pred             CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhh-hH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHH-
Q 008788          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKR-NL-----LHLNVAACLLKLGECRKSIEACNKVLDANP-AHVKG-  483 (553)
Q Consensus       412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~-~~-----~~~nla~~~~kl~~~~~A~~~~~~al~~dp-~n~ka-  483 (553)
                      .+..+|-..|.++++.+..-.|....+-+.+.... ..     ..+-+|..+...+++++|+...+.+|..-. .+.++ 
T Consensus        48 ~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l  127 (207)
T COG2976          48 EQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL  127 (207)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH
Confidence            44568888999999877655553332222222222 22     234567777888999999999999995532 35554 


Q ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHH
Q 008788          484 -LYRRGMAYMALGEFEEAQRDFEMM  507 (553)
Q Consensus       484 -~~r~g~a~~~lg~~~~A~~~l~~a  507 (553)
                       -.|+|.+...++.+++|+..+...
T Consensus       128 ~~lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976         128 AALRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcc
Confidence             568899999999999999988754

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.48  E-value=1.6  Score=28.54  Aligned_cols=33  Identities=21%  Similarity=0.416  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 008788          482 KGLYRRGMAYMALGEFEEAQRD--FEMMMKVDKSS  514 (553)
Q Consensus       482 ka~~r~g~a~~~lg~~~~A~~~--l~~al~l~P~~  514 (553)
                      +.+|-.|..+...|+|++|+..  |+-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4567777777888888888888  44777777653

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=88.47  E-value=5.2  Score=35.84  Aligned_cols=80  Identities=15%  Similarity=0.122  Sum_probs=49.6

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      ...+-.--|..++..++|.+|+..++.+.+-.|..+-+--.++.|+..+++.+-=. +-..+++-.++  +++....+.+
T Consensus        43 ~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~-~A~evle~~~d--~~a~~Lv~~L  119 (160)
T PF09613_consen   43 FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRR-YADEVLESGAD--PDARALVRAL  119 (160)
T ss_pred             chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHH-HHHHHHhcCCC--hHHHHHHHHH
Confidence            34455666777778888888888888877777777655556677777777764322 23345555544  3455555444


Q ss_pred             HHH
Q 008788          526 KKQ  528 (553)
Q Consensus       526 ~~~  528 (553)
                      ..+
T Consensus       120 l~~  122 (160)
T PF09613_consen  120 LAR  122 (160)
T ss_pred             HHh
Confidence            433

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.17  E-value=2.4  Score=47.26  Aligned_cols=120  Identities=15%  Similarity=0.171  Sum_probs=74.4

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH-----cC--CHHHH-
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-----LG--ECRKS-  466 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k-----l~--~~~~A-  466 (553)
                      +....+..+.|-.++..|+|.+|+++|+.+|-.+.-+--++.++....+++...+.-.+.-..+.     ++  ...++ 
T Consensus       988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen  988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence            55677778999999999999999999999887544333344444444444444442222211111     11  23333 


Q ss_pred             -HHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          467 -IEACNKVLDANPA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       467 -~~~~~~al~~dp~-n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                       +..|=.-..+.|- ..-|+...-.+++++++|..|...-++.|++.|.-
T Consensus      1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~ 1117 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSP 1117 (1202)
T ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Confidence             1111111233443 33455555678889999999999999999999974

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.15  E-value=1.5  Score=34.21  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=29.2

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~  430 (553)
                      .|..+-.+|..+=+.|+|.+|+.+|.+||++|..
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~   38 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ   38 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            4566677888888999999999999999998765

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=88.12  E-value=13  Score=38.32  Aligned_cols=105  Identities=10%  Similarity=0.094  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDA----NPAHVKGLYRRGMAYMA---LGEFEEAQRDFEMMMKVDKSSEPDAT  519 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~----dp~n~ka~~r~g~a~~~---lg~~~~A~~~l~~al~l~P~~~~~~~  519 (553)
                      ..+..|+=++|...++|+.-++..+..-.+    -++....-+..|.|+.+   -|+.++|+..+..++.-+..+.+++.
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            456678888899999999988888776666    34566677888888888   89999999999997766655556666


Q ss_pred             HHHHHHHHHHH--------HHHHHHHHHHHhhcccccCCC
Q 008788          520 AALSKLKKQRR--------KLKVRLENSLKGCLTRSLGKF  551 (553)
Q Consensus       520 ~~l~~l~~~~~--------~~~~~~~~~~~~mf~~~~~~~  551 (553)
                      -.+.++-+.+-        +...+.-..|++-|...++.|
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y  260 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY  260 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence            66666555442        223344567777777665443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=88.12  E-value=9.4  Score=38.79  Aligned_cols=117  Identities=19%  Similarity=0.133  Sum_probs=81.7

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...+..+.+.|++..|.....++..........           ...+.+-.|..+...|+..+|+......+..
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~  213 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLKC  213 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            35566777888888999999999888877632111110           1344555666677788888888887777761


Q ss_pred             -C---------------------------------CCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCChH
Q 008788          477 -N---------------------------------PAHVKGLYRRGMAYMAL------GEFEEAQRDFEMMMKVDKSSEP  516 (553)
Q Consensus       477 -d---------------------------------p~n~ka~~r~g~a~~~l------g~~~~A~~~l~~al~l~P~~~~  516 (553)
                       .                                 ...+++++.+|.....+      +.++++...|+.|.+++|++..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k  293 (352)
T PF02259_consen  214 RLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK  293 (352)
T ss_pred             HhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence             0                                 11256788888888888      8999999999999999998754


Q ss_pred             HHHHHHHHH
Q 008788          517 DATAALSKL  525 (553)
Q Consensus       517 ~~~~~l~~l  525 (553)
                       +...+...
T Consensus       294 -~~~~~a~~  301 (352)
T PF02259_consen  294 -AWHSWALF  301 (352)
T ss_pred             -HHHHHHHH
Confidence             44434433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=87.78  E-value=2.1  Score=29.36  Aligned_cols=25  Identities=24%  Similarity=0.469  Sum_probs=22.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788          485 YRRGMAYMALGEFEEAQRDFEMMMK  509 (553)
Q Consensus       485 ~r~g~a~~~lg~~~~A~~~l~~al~  509 (553)
                      +.+|.+|..+|+++.|++.++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            6789999999999999999998884

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=87.43  E-value=3.5  Score=39.11  Aligned_cols=85  Identities=15%  Similarity=0.083  Sum_probs=52.1

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..|..++..++..-...-+..|+..|.+|+..-.  .|...       .....+.+-+|..+.++|++++|++.+.+++.
T Consensus       123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~--~~~~~-------~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~  193 (214)
T PF09986_consen  123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENED--FPIEG-------MDEATLLYLIGELNRRLGNYDEAKRWFSRVIG  193 (214)
T ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCc--CCCCC-------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence            3444555555544444445666666766665211  11110       00145777899999999999999999999998


Q ss_pred             hCCCCH-HHHHHHHH
Q 008788          476 ANPAHV-KGLYRRGM  489 (553)
Q Consensus       476 ~dp~n~-ka~~r~g~  489 (553)
                      .-..+. ..+..+|+
T Consensus       194 ~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  194 SKKASKEPKLKDMAR  208 (214)
T ss_pred             CCCCCCcHHHHHHHH
Confidence            754333 35555554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.38  E-value=10  Score=36.74  Aligned_cols=115  Identities=20%  Similarity=0.278  Sum_probs=59.9

Q ss_pred             ChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 008788          390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA  469 (553)
Q Consensus       390 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  469 (553)
                      ++.-++-.|+...-.||.+-..-+...-...-++.++.++.. ...+..-..+++......+.++.|++-+++|.-.+..
T Consensus       121 PFsmR~lhAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~-~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~  199 (366)
T KOG2796|consen  121 PFSMRILHAELQQYLGNPQESLDRLHKLKTVVSKILANLEQG-LAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDA  199 (366)
T ss_pred             cHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHH
Confidence            444455556666555555443333333333333434333221 1111112233344445566677778788888888888


Q ss_pred             HHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788          470 CNKVLDANP-AHVKGLYRRGMAYMALGEFEEAQRDFE  505 (553)
Q Consensus       470 ~~~al~~dp-~n~ka~~r~g~a~~~lg~~~~A~~~l~  505 (553)
                      ++++++.+| ..+...-.+|...++.|+.+.|...|+
T Consensus       200 ~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~  236 (366)
T KOG2796|consen  200 YHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ  236 (366)
T ss_pred             HHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            888887773 344444445555555555555555554

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.21  E-value=0.88  Score=27.12  Aligned_cols=23  Identities=26%  Similarity=0.281  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 008788          483 GLYRRGMAYMALGEFEEAQRDFE  505 (553)
Q Consensus       483 a~~r~g~a~~~lg~~~~A~~~l~  505 (553)
                      +++.+|.++..+|++++|+..++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45666666666666666666554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=86.55  E-value=4.5  Score=47.56  Aligned_cols=108  Identities=18%  Similarity=0.178  Sum_probs=72.0

Q ss_pred             hhhHHHHHHH---HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 008788          391 FDGIMDEAEK---IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  467 (553)
Q Consensus       391 ~~e~~~~a~~---~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~  467 (553)
                      ++...+.+..   +......|-+-.++++|.+.|+.-++-+..    .           ...|..++..+++..+-++|.
T Consensus      1520 FeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q----~-----------~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1520 FERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ----T-----------RKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc----h-----------hhHHHHHHHHHhcccHHHHHH
Confidence            4455555553   445566667778888888888887774431    1           456666677777777777777


Q ss_pred             HHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          468 EACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       468 ~~~~~al~~dp~--n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      ....+||..-|.  +....-.-|+.-++.|+-+.++..|+-.|.-+|.
T Consensus      1585 ~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred             HHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc
Confidence            777777777665  5556666666677777777777777777777765

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=86.37  E-value=9  Score=42.67  Aligned_cols=125  Identities=17%  Similarity=0.182  Sum_probs=89.7

Q ss_pred             CChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccC---CCCh--------hHHHHHhhhhhHHHHHHHHHH
Q 008788          389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN---PQDD--------EEGKVFVGKRNLLHLNVAACL  457 (553)
Q Consensus       389 ~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~---~~~~--------ee~~~~~~~~~~~~~nla~~~  457 (553)
                      ++.++..  +-.+.--|-.....+...+|.+.+.+|++.++...   +...        +.......+...++...+.|.
T Consensus       294 l~~~~l~--~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~  371 (608)
T PF10345_consen  294 LPKEELY--ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCN  371 (608)
T ss_pred             cCHHHHH--HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4555553  33344457777777777799999999999887654   1110        112233444566788889999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHhCCCCh
Q 008788          458 LKLGECRKSIEACNKVLDANP---------AHVKGLYRRGMAYMALGEFEEAQRDFE--------MMMKVDKSSE  515 (553)
Q Consensus       458 ~kl~~~~~A~~~~~~al~~dp---------~n~ka~~r~g~a~~~lg~~~~A~~~l~--------~al~l~P~~~  515 (553)
                      +-+++|..|......+.....         -.+-.+|-.|..+...|+.+.|+..|.        .+....+.++
T Consensus       372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E  446 (608)
T PF10345_consen  372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE  446 (608)
T ss_pred             HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence            999999999998887776532         247789999999999999999999998        5555566554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=86.06  E-value=25  Score=31.53  Aligned_cols=82  Identities=16%  Similarity=0.088  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      +..+..+..+-++.++..++...+.-+--+.|+++..-.--|..|...|+|.+|+..|+.+..-.|.. +-++..+..|.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL   88 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHH
Confidence            45566777777788888888888888888889999999999999999999999999999877777764 55666666665


Q ss_pred             HHH
Q 008788          527 KQR  529 (553)
Q Consensus       527 ~~~  529 (553)
                      ...
T Consensus        89 ~~~   91 (160)
T PF09613_consen   89 YAL   91 (160)
T ss_pred             HHc
Confidence            543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=86.04  E-value=7.3  Score=43.46  Aligned_cols=63  Identities=16%  Similarity=0.128  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLD---------------------ANPAHVKGLYRRGMAYMALGEFEEAQRDFEM  506 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~---------------------~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~  506 (553)
                      .+|.-.|+..-..|+.+.|+.+|..|-.                     ....+..|-|.+|+-|...|++.+|+..|.+
T Consensus       913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            5666678777788998888888887652                     2356778999999999999999999999988


Q ss_pred             HHHh
Q 008788          507 MMKV  510 (553)
Q Consensus       507 al~l  510 (553)
                      |-.+
T Consensus       993 Aqaf  996 (1416)
T KOG3617|consen  993 AQAF  996 (1416)
T ss_pred             HHHH
Confidence            7543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.94  E-value=8  Score=43.21  Aligned_cols=32  Identities=28%  Similarity=0.451  Sum_probs=28.6

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhh
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN  429 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~  429 (553)
                      ++.++..|+.+|++|+|++|...|-++|.+++
T Consensus       368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le  399 (933)
T KOG2114|consen  368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLE  399 (933)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence            56688999999999999999999999988654

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.90  E-value=2.5  Score=32.73  Aligned_cols=36  Identities=17%  Similarity=0.156  Sum_probs=29.9

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~  430 (553)
                      +..|..+..+|...=+.|+|.+|+.+|..||+.|..
T Consensus         3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~   38 (75)
T cd02677           3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            345666677778888889999999999999998765

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.69  E-value=2.6  Score=32.70  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=30.6

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~  430 (553)
                      +..|..+..+|...=..|+|++|+.+|..||++|..
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            455677778888888999999999999999998765

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=85.38  E-value=6.6  Score=45.47  Aligned_cols=100  Identities=13%  Similarity=0.217  Sum_probs=68.7

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc-------CCHHHHHHHHHHHHh
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-------GECRKSIEACNKVLD  475 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl-------~~~~~A~~~~~~al~  475 (553)
                      .-.+.+...+.|++|+..|++...    .-|+..|-.        .+.+.+|...+..       ..+.+|+.-+++.- 
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  546 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRE----SFPGRKEGY--------EAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-  546 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhh----cCCCcccch--------HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-
Confidence            445556667788889988888776    455543322        2344444444432       24666666665533 


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      --|.-+=-|.-.|.+|.++++|++-+++|..|++--|++.
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (932)
T PRK13184        547 GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHP  586 (932)
T ss_pred             CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence            2355666788888999999999999999999999999873

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.30  E-value=12  Score=40.17  Aligned_cols=120  Identities=15%  Similarity=0.122  Sum_probs=81.4

Q ss_pred             Hhhhccccc---cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q 008788          402 RVTGNRLFK---EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA--  476 (553)
Q Consensus       402 k~~G~~~~~---~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~--  476 (553)
                      .+.|+.+|+   ...|++|.+.|.-|....+   |.+--..-+-...-+..++.+|......|+.+.|.....++|-.  
T Consensus       239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d---~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d  315 (665)
T KOG2422|consen  239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHD---PNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFD  315 (665)
T ss_pred             ccCceeEEEeecchHHHHHHHHHHHHHhhcC---CcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence            467777774   5678999999888877422   11100000001112567788898888999988888877777611  


Q ss_pred             -------------------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Q 008788          477 -------------------NPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS-SEPDATAALSK  524 (553)
Q Consensus       477 -------------------dp~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~-~~~~~~~~l~~  524 (553)
                                         .|.|   ..|+||.-+-+.+.|-|.-|.++.+..++|+|. +.-.+.-.+..
T Consensus       316 ~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~  386 (665)
T KOG2422|consen  316 RALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI  386 (665)
T ss_pred             HHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH
Confidence                               1333   568889899999999999999999999999998 43334444443

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.72  E-value=3.5  Score=31.81  Aligned_cols=35  Identities=17%  Similarity=0.255  Sum_probs=28.7

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~  430 (553)
                      ..|..+-..|...=+.|+|++|+.+|..|++.|..
T Consensus         4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~   38 (75)
T cd02656           4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ   38 (75)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            45556667777777889999999999999998765

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=84.38  E-value=5.2  Score=38.58  Aligned_cols=126  Identities=13%  Similarity=0.088  Sum_probs=74.2

Q ss_pred             hccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---C-
Q 008788          405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA---H-  480 (553)
Q Consensus       405 G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~---n-  480 (553)
                      +..++..++.-.|+..|...+.    ..|.+--....-......+|.....|+.. -....|.++++.||-.-..   . 
T Consensus         2 ~~~L~D~~e~L~~L~~~~~~~~----~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~-~~~~n~~e~~d~ALm~Ae~r~D~~   76 (368)
T COG5091           2 YKALYDEKEPLKALHLYDEILK----GSPTNLTALIFKAACLEKLYFGFSDWHSD-ATMENAKELLDKALMTAEGRGDRS   76 (368)
T ss_pred             ccchhcccchHHHhhhhhhhhc----cCCcceeEEeehhhhHHHHHhhhhhhhcc-cChhhHHHHHHHHHHhhhccCCcc
Confidence            3456666667777888877665    33332100000000112344455555532 3467789999998855321   1 


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008788          481 --VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLE  537 (553)
Q Consensus       481 --~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~  537 (553)
                        .-+-||++.+|+.+.+|+.|..+|..|+++--+..  .-..-.+|...+...+++++
T Consensus        77 ~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~--L~~We~rLet~L~~~~kkQ~  133 (368)
T COG5091          77 KIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDT--LPLWEDRLETKLNKKNKKQK  133 (368)
T ss_pred             eeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHhHhhHhhc
Confidence              22568999999999999999999999999855432  33333445555544444443

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=84.37  E-value=3.1  Score=31.52  Aligned_cols=35  Identities=17%  Similarity=0.221  Sum_probs=29.1

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~  430 (553)
                      +.|..+-..|..+=+.|+|.+|+..|.+|++.|..
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~   37 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ   37 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            45666677788888899999999999999998754

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.11  E-value=4.9  Score=31.21  Aligned_cols=34  Identities=15%  Similarity=0.117  Sum_probs=29.4

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~  430 (553)
                      .|..+-.++..+=+.|+|.+|+.+|..|+++|..
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            4666777888888999999999999999998755

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=84.07  E-value=1.7  Score=45.21  Aligned_cols=59  Identities=19%  Similarity=0.417  Sum_probs=46.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788          451 LNVAACLLKLGECRKSIEACNKVL--------DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (553)
Q Consensus       451 ~nla~~~~kl~~~~~A~~~~~~al--------~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~  509 (553)
                      .-|...|.-+|+|..|++..+.+=        ..-+.++..+|..|.||+++++|.+|++.|..+|-
T Consensus       126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566667999999998765421        11245778899999999999999999999998874

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.81  E-value=4.4  Score=31.34  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=30.9

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~  430 (553)
                      ++.|..+-.+|...=..|+|++|+.+|.+|++.|..
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   38 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            456777778888888999999999999999998755

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=83.09  E-value=32  Score=31.48  Aligned_cols=65  Identities=11%  Similarity=0.164  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~---n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~  511 (553)
                      ..++..+|.-|.+.|++..|++.|.++.+....   -...+++.-.+.+..++|..+...+.+|-.+-
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            467889999999999999999999998887643   34567888889999999999999999998763

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=82.62  E-value=9.9  Score=37.71  Aligned_cols=99  Identities=7%  Similarity=-0.071  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~-lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~  527 (553)
                      +|..+.....+.+..+.|...+.+|++..+.+...|...|..-++ .++.+.|...|+++++.-|.+..-+...+..+. 
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~-   81 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI-   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence            344555555666679999999999997777788999999999777 466666999999999999987433333333332 


Q ss_pred             HHHHHHHHHHHHHHhhcccccC
Q 008788          528 QRRKLKVRLENSLKGCLTRSLG  549 (553)
Q Consensus       528 ~~~~~~~~~~~~~~~mf~~~~~  549 (553)
                      .+. ...+-|..|.+..+..+.
T Consensus        82 ~~~-d~~~aR~lfer~i~~l~~  102 (280)
T PF05843_consen   82 KLN-DINNARALFERAISSLPK  102 (280)
T ss_dssp             HTT--HHHHHHHHHHHCCTSSC
T ss_pred             HhC-cHHHHHHHHHHHHHhcCc
Confidence            222 234556777776665443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=81.97  E-value=4.2  Score=35.77  Aligned_cols=51  Identities=20%  Similarity=0.141  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE  498 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~  498 (553)
                      ......|...+..|+|.-|+..++.++..||+|..|...++.++.+++.-.
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence            456778888889999999999999999999999999999999998887543

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=81.96  E-value=7.4  Score=30.07  Aligned_cols=36  Identities=17%  Similarity=0.259  Sum_probs=29.7

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~  430 (553)
                      +..|..+...|..+=..|++++|+.+|.+|++.|..
T Consensus         5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~   40 (77)
T smart00745        5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE   40 (77)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            345666777788888899999999999999998765

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=81.74  E-value=2.8  Score=27.75  Aligned_cols=30  Identities=17%  Similarity=0.111  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      .+|..||.+.+..++|++|+.++.++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.95  E-value=32  Score=35.79  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=73.2

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC---HHHHH---HH
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE---CRKSI---EA  469 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~---~~~A~---~~  469 (553)
                      =.+.-+.+.|..++++..|.+|+.+.-.|=++|..+.+.-    -..-+..+.+.+.+-.||+.+++   .++|-   ..
T Consensus       161 mmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~kl----Le~VDNyallnLDIVWCYfrLknitcL~DAe~RL~r  236 (568)
T KOG2561|consen  161 MMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKL----LELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVR  236 (568)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHH----HHhhcchhhhhcchhheehhhcccccCChHHHHHHH
Confidence            3566788999999999999999999988877766554421    01112234455566788888875   33332   23


Q ss_pred             HHHHHhh--------------CCCCHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHH
Q 008788          470 CNKVLDA--------------NPAHVKGLYRR-----GMAYMALGEFEEAQRDFEMMMK  509 (553)
Q Consensus       470 ~~~al~~--------------dp~n~ka~~r~-----g~a~~~lg~~~~A~~~l~~al~  509 (553)
                      |.+-+..              ...-.+|+|.|     |...++.|+-++|.+.|+.|..
T Consensus       237 a~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~  295 (568)
T KOG2561|consen  237 ARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA  295 (568)
T ss_pred             HHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            3333322              12334565544     8999999999999999998864

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=80.91  E-value=11  Score=38.96  Aligned_cols=69  Identities=16%  Similarity=0.155  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHH---cCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhCCCC
Q 008788          448 LLHLNVAACLLK---LGECRKSIEACNKVL-DANPAHVKGLYRRGMAYMALG---------EFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       448 ~~~~nla~~~~k---l~~~~~A~~~~~~al-~~dp~n~ka~~r~g~a~~~lg---------~~~~A~~~l~~al~l~P~~  514 (553)
                      .+...+|.++.+   .|+.++|++.+..++ ..++.++..|...|.+|..+-         .++.|+.+|.++.+++|+.
T Consensus       180 ~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  180 NIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            345567888888   899999999999954 555678888988898887642         3688999999999999864


Q ss_pred             hH
Q 008788          515 EP  516 (553)
Q Consensus       515 ~~  516 (553)
                      -+
T Consensus       260 Y~  261 (374)
T PF13281_consen  260 YS  261 (374)
T ss_pred             cc
Confidence            33

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=80.33  E-value=7.9  Score=38.17  Aligned_cols=54  Identities=19%  Similarity=0.204  Sum_probs=48.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788          453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM  506 (553)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~  506 (553)
                      -+.-.+..+++.+|...+..++..+|.|..+...++.|+...|+.+.|...|..
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            344556789999999999999999999999999999999999999999887764

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.23  E-value=15  Score=40.44  Aligned_cols=91  Identities=15%  Similarity=0.164  Sum_probs=69.6

Q ss_pred             hhhcccccc----C-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 008788          403 VTGNRLFKE----G-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVL  474 (553)
Q Consensus       403 ~~G~~~~~~----g-~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~al  474 (553)
                      ..|..+++.    . ++..|+..|.+|.+    ...             ..+.+++|.|+..-.   ++..|..++..|.
T Consensus       293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~----~g~-------------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa  355 (552)
T KOG1550|consen  293 GLGRLYLQGLGVEKIDYEKALKLYTKAAE----LGN-------------PDAQYLLGVLYETGTKERDYRRAFEYYSLAA  355 (552)
T ss_pred             HHHHHHhcCCCCccccHHHHHHHHHHHHh----cCC-------------chHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence            455555553    2 78889999999887    332             346788898888765   5778999998887


Q ss_pred             hhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCC
Q 008788          475 DANPAHVKGLYRRGMAYMAL----GEFEEAQRDFEMMMKVDK  512 (553)
Q Consensus       475 ~~dp~n~ka~~r~g~a~~~l----g~~~~A~~~l~~al~l~P  512 (553)
                      ..  .+..|.|++|.||..-    .+...|..++++|.+..+
T Consensus       356 ~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~  395 (552)
T KOG1550|consen  356 KA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN  395 (552)
T ss_pred             Hc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence            74  5889999999988863    578899999999988873

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=80.05  E-value=19  Score=36.25  Aligned_cols=117  Identities=15%  Similarity=0.137  Sum_probs=82.1

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH--HHHHHHHh
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI--EACNKVLD  475 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~--~~~~~al~  475 (553)
                      +..=.+.|-.+....+|.-|...|-+|.+-+..+...-    +.     ...+-.+-+|...++..++.-  -....+++
T Consensus       209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v----~A-----~~sLKYMlLcKIMln~~ddv~~lls~K~~l~  279 (411)
T KOG1463|consen  209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV----KA-----LTSLKYMLLCKIMLNLPDDVAALLSAKLALK  279 (411)
T ss_pred             HHHHHhccceeecccccchHHHHHHHHHccccccCCcH----HH-----HHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh
Confidence            33344677778888999999999999988665543321    11     233344566777777776644  44556888


Q ss_pred             hCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788          476 ANPAHVKGLYRRGMAYMA--LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~--lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~  527 (553)
                      .+.....|+--.|.|+.+  |.+|+.|+.+|+.=|.-||    -++.+++.|-.
T Consensus       280 y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~----ivr~Hl~~Lyd  329 (411)
T KOG1463|consen  280 YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP----IVRSHLQSLYD  329 (411)
T ss_pred             ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh----HHHHHHHHHHH
Confidence            888899999999999875  6799999999998888776    25555554433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	553
3jym_A	377	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		1e-29
3jym_A	377	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		4e-10
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		3e-29
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		4e-10
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		8e-28
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		9e-28
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		1e-24
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		6e-23
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		2e-19
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		5e-11
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		4e-09
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		3e-10
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		3e-09
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		3e-09
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		3e-09
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		3e-09
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		3e-09
1wao_1	477	Pp5 Structure Length = 477		1e-08
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		2e-08
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		2e-08
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-08
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		3e-08
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		3e-08
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		4e-08
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		4e-08
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		6e-08
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		9e-08
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		3e-07
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		5e-07
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		8e-07
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		9e-07
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		9e-07
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		1e-06
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		1e-06
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		1e-06
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		2e-06
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		2e-06
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		2e-06
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		2e-06
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		2e-06
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		3e-06
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		6e-06
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		6e-06
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		7e-06
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		8e-06
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		1e-05
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		2e-05
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		3e-05
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		3e-05
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		3e-05
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		3e-05
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-05
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		7e-05
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		1e-04
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		1e-04
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		1e-04
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		1e-04
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-04
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-04
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		2e-04
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		2e-04
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		4e-04
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		5e-04
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		8e-04

>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377

Iteration: 1
 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 166/344 (48%), Gaps = 25/344 (7%)
Query: 50  QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
           +V  H T   LDG   +S+R     +    +  LG+ +++ G  +GI TM KGE ++F +
Sbjct: 48  EVEVHYTGTLLDGKKFDSSRD----RDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTI 103
Query: 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
            P++ YGE      +P T P +  L F++E++ +   + IA D G+ KK++ EG  WE P
Sbjct: 104 PPELAYGES----GSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENP 159
Query: 170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
           + P EV     A+  DG  ++S  EG    FT     +   L   + TM + EK ++ V 
Sbjct: 160 KDPDEVFVKYEARLEDG-TVVSKSEG--VEFTVKDGHLCPALAKAVKTMKKGEKVLLAVK 216
Query: 230 SQYLTPSPLMPVVEGCXXXXXXXXXXXXIQ------VRDMLGDGRLIKRRIRDGKGEFPM 283
            QY       P                 ++      V ++  D +++K+ +++ +G    
Sbjct: 217 PQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEG---Y 273
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
           + P   +++ V   G L  ++  VF     D   +P EF + E  V EG +  V  M  G
Sbjct: 274 ERPNEGAVVTVKITGKL--QDGTVFLKKGHDEQ-EPFEFKTDEEAVIEGLDRAVLNMKKG 330
Query: 344 EIALVTCPPDYAY--DKFLRPANVPEGAHIQWEIELLGFEKPKD 385
           E+ALVT PP+YAY   +  + A VP  + + +E+EL+ F K K+
Sbjct: 331 EVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKDKE 374

>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
           D P     + VHY G LL+ +K   +D+  D D    +F  G+G V +G++  ++ M  G
Sbjct: 41  DTPEVGDEVEVHYTGTLLDGKK---FDSSRDRD-DTFKFKLGQGQVIKGWDQGIKTMKKG 96
Query: 344 EIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWT--GLSFDGIMDEAEK 400
           E AL T PP+ AY +   P  +P  A +Q+++ELL +   +D    G  F  I+ E +K
Sbjct: 97  ENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDK 155

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 164/341 (48%), Gaps = 25/341 (7%)
Query: 50  QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
           +V  H T   LDG   +S+R     +    +  LG+ +++ G  +GI TM KGE ++F +
Sbjct: 32  EVEVHYTGTLLDGKKFDSSRD----RDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTI 87
Query: 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
            P++ YGE      +P T P +  L F++E++ +   + IA D G+ KK++ EG  WE P
Sbjct: 88  PPELAYGES----GSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENP 143
Query: 170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
           + P EV     A+  DG  ++S  EG    FT     +   L   + TM + EK ++ V 
Sbjct: 144 KDPDEVFVKYEARLEDG-TVVSKSEG--VEFTVKDGHLCPALAKAVKTMKKGEKVLLAVK 200
Query: 230 SQYLTPSPLMPVVEGCXXXXXXXXXXXXIQ------VRDMLGDGRLIKRRIRDGKGEFPM 283
            QY       P                 ++      V ++  D +++K+ +++ +G    
Sbjct: 201 PQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEG---Y 257
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
           + P   +++ V   G L  ++  VF     D   +P EF + E  V EG +  V  M  G
Sbjct: 258 ERPNEGAVVTVKITGKL--QDGTVFLKKGHDEQ-EPFEFKTDEEAVIEGLDRAVLNMKKG 314
Query: 344 EIALVTCPPDYAY--DKFLRPANVPEGAHIQWEIELLGFEK 382
           E+ALVT PP+YAY   +  + A VP  + + +E+EL+ F K
Sbjct: 315 EVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK 355

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
           D P     + VHY G LL+ +K   +D+  D D    +F  G+G V +G++  ++ M  G
Sbjct: 25  DTPEVGDEVEVHYTGTLLDGKK---FDSSRDRD-DTFKFKLGQGQVIKGWDQGIKTMKKG 80
Query: 344 EIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWT--GLSFDGIMDEAEK 400
           E AL T PP+ AY +   P  +P  A +Q+++ELL +   +D    G  F  I+ E +K
Sbjct: 81  ENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDK 139

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  121 bits (304), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 169/369 (45%), Gaps = 26/369 (7%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP     V    + K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 89
Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPS----PLMPVVEGCXXXXXXXXXXXXIQVRDMLGD 266
            ++G+ TM + E   +    +Y   +    P +P                  +  D+L D
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIP----SNATLFFEVELLDFKGEDLLED 145
Query: 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 326
           G +I+R  R G+G      P   + + +H +G       +VF       D + + F+ GE
Sbjct: 146 GGIIRRTKRRGEG---YSNPNEGARVQIHLEGRCGG---RVF-------DCRDVAFTVGE 192
Query: 327 GL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
           G    +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 252
Query: 383 PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF 442
            K+   +     +++A  ++  G   FK GK+  A  +Y K++          ++E K  
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKAS 312
Query: 443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502
                   LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ 
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 503 DFEMMMKVD 511
           DFE +++V+
Sbjct: 373 DFEKVLEVN 381

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  121 bits (304), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 166/369 (44%), Gaps = 26/369 (7%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V      K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 89
Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPS----PLMPVVEGCXXXXXXXXXXXXIQVRDMLGD 266
            ++G+ TM R E   +    +Y   S    P +P                  +  D+  D
Sbjct: 90  WDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIP----SNATLFFEIELLDFKGEDLFED 145
Query: 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 326
           G +I+R  R G+G      P   + + +H +G          +D R       + F+ GE
Sbjct: 146 GGIIRRTKRKGEG---YSNPNEGATVEIHLEGRCGGR----MFDCR------DVAFTVGE 192
Query: 327 GL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
           G    +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 252
Query: 383 PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF 442
            K+   +     +++A  ++  G   FK GK+  A  +Y K++          ++E K  
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKAS 312
Query: 443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502
                   LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ 
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 503 DFEMMMKVD 511
           DFE +++V+
Sbjct: 373 DFEKVLEVN 381

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 134/257 (52%), Gaps = 27/257 (10%)
Query: 263 MLGDGRLIKRRIRDGKGEF-PMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           M  DG +I+R    G+G   P +  + +  L  +YK  L               D + L 
Sbjct: 21  MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------------DQRELR 66
Query: 322 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQW 373
           F  GEG    +P G E  ++ M  GE ++V   P YA+     +KF     +P  A +++
Sbjct: 67  FEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF----QIPPNAELKY 122
Query: 374 EIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP 433
           E+ L  FEK K+   ++ +  ++++  ++  G   FKEGK++ A  +Y+K++    + + 
Sbjct: 123 ELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS 182
Query: 434 QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493
             +EE +     R   HLN+A C LKL     +IE+CNK L+ +  + KGL+RRG A++A
Sbjct: 183 FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLA 242
Query: 494 LGEFEEAQRDFEMMMKV 510
           + +FE A+ DF+ ++++
Sbjct: 243 VNDFELARADFQKVLQL 259

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score =  105 bits (262), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 131/257 (50%), Gaps = 27/257 (10%)
Query: 263 MLGDGRLIKRRIRDGKGEF-PMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           M  DG +I+R    G+G   P +  + +  L  +YK  L               D + L 
Sbjct: 21  MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------------DQRELR 66
Query: 322 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQW 373
           F  GEG    +P G E  ++    GE ++V   P YA+     +KF     +P  A +++
Sbjct: 67  FEIGEGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKF----QIPPNAELKY 122
Query: 374 EIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP 433
           E+ L  FEK K+    + +  ++++  ++  G   FKEGK++ A  +Y+K++    + + 
Sbjct: 123 ELHLKSFEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS 182
Query: 434 QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493
             +EE +     R   HLN+A C LKL     +IE+CNK L+ +  + KGL RRG A++A
Sbjct: 183 FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA 242
Query: 494 LGEFEEAQRDFEMMMKV 510
           + +FE A+ DF+ ++++
Sbjct: 243 VNDFELARADFQKVLQL 259

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/259 (33%), Positives = 129/259 (49%), Gaps = 29/259 (11%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D ++ K+ I++G G  P       S   +HY+    N + K F DT   ++ QP+E   G
Sbjct: 48  DEKVSKQIIKEGHGSKPSKY----STCFLHYRAWTKNSQHK-FEDTW--HEQQPIELVLG 100
Query: 326 -EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK---FLRPANVPEGAHIQWEIELLGFE 381
            E     G  + V  M  GE ALV    + AY K   F  P NVP  A + +E+E++GF+
Sbjct: 101 KEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFP-NVPPMADLLYEVEVIGFD 159
Query: 382 KPKDWTGLSFDGIMDE----AEKIRVTGNRLFKEGKFELAKAKYEKVLR----DFN---H 430
           + K+    S D  ++E    A++ ++ GN LFKE K E A  +YE  +     DF    +
Sbjct: 160 ETKEGKARS-DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLY 218
Query: 431 VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490
              QD     + +  +N  HLN+AACL+KL    ++I  CN VL     + K L+RRG A
Sbjct: 219 GKYQD-----MALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKA 273
Query: 491 YMALGEFEEAQRDFEMMMK 509
              LG+ + A+ DF    K
Sbjct: 274 KAELGQMDSARDDFRKAQK 292

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 78  PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
           P    LGK +++     G+ TM KGE+     KP+  YG       +    P +  L FE
Sbjct: 80  PFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYG----SAGSLPKIPSNATLFFE 135
Query: 138 IEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEP 197
           IE++DF K + + +D G++++   +G+G+  P     V+  +  + G G++     +   
Sbjct: 136 IELLDF-KGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCG-GRMF----DCRD 189
Query: 198 YFFTFGKSE---VPKGLEMGIGTMTREEKAVIYVTSQY 232
             FT G+ E   +P G++  +  M REE+ ++Y+  +Y
Sbjct: 190 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRY 227

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 101/245 (41%), Gaps = 27/245 (11%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGK-LILSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V      K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPS----PLMPVVEGCXXXXXXXXXXXXIQVRDMLGD 266
            ++G+ TM + E   +    +Y   S    P +P                  +  D+  D
Sbjct: 94  WDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIP----SNATLFFEIELLDFKGEDLFED 149
Query: 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 326
           G +I+R  R G+G      P   + + +H +G          +D R       + F+ GE
Sbjct: 150 GGIIRRTKRKGEG---YSNPNEGATVEIHLEGRCGGR----MFDCR------DVAFTVGE 196
Query: 327 GL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
           G    +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK
Sbjct: 197 GEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 256
Query: 383 PKD-W 386
            K+ W
Sbjct: 257 AKESW 261

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR--DFNHVNPQDDEEGKVFVGKRNLL 449
           D I+  +E ++  GN  FK   +E+A  KY KVLR  + +    +D +  K+     + +
Sbjct: 217 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCV 276
Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
            LN+ AC LK+ + + ++++C + L+ +P++ K LYRR   +  L E+++A  D +   +
Sbjct: 277 -LNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335
Query: 510 V 510
           +
Sbjct: 336 I 336

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R G GE   + P+    + VHYKG L N +K   +D+  D + +P  FS G
Sbjct: 34  DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 86
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+
Sbjct: 87  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R G GE   + P+    + VHYKG L N +K   +D+  D + +P  FS G
Sbjct: 34  DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 86
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+
Sbjct: 87  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 15/119 (12%)
Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHL 451
           DG +  AE+++   N  FK   +E A   Y + +     +NP +     ++ G R+L +L
Sbjct: 7   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAI----ELNPSN----AIYYGNRSLAYL 58
Query: 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
                   LG+  ++IE   K       ++KG YRR  + MALG+F  A RD+E ++KV
Sbjct: 59  RTECYGYALGDATRAIELDKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV 110

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R G GE   + P+    + VHYKG L N +K   +D+  D + +P  FS G
Sbjct: 18  DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 70
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+
Sbjct: 71  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 126

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R G GE   + P+    + VHYKG L N +K   +D+  D + +P  FS G
Sbjct: 18  DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 70
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+
Sbjct: 71  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 126

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 452
           G +  AE+++   N  FK   +E A   Y + +     +NP +     ++ G R+L +L 
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN----AIYYGNRSLAYLR 52
Query: 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512
                  LG+  ++IE   K       ++KG YRR  + MALG+F  A RD+E ++KV K
Sbjct: 53  TECYGYALGDATRAIELDKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV-K 104
Query: 513 SSEPDA 518
             + DA
Sbjct: 105 PHDKDA 110

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R+G G    + P+    + VHY G LL+  K   +D+ +D   +   F  G
Sbjct: 30  DEGVLKVIKREGTG---TEMPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 82
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ +  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+
Sbjct: 83  KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 138

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R+G G    + P+    + VHY G LL+  K   +D+ +D   +   F  G
Sbjct: 34  DEGVLKVIKREGTG---TEMPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 86
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ +  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+
Sbjct: 87  KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 142

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 457
           A++ +  GN  FK+G        Y   +R +N    +D E          +L+ N AACL
Sbjct: 13  AQEEKNKGNEYFKKGD-------YPTAMRHYNEAVKRDPENA--------ILYSNRAACL 57
Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
            KL E +++++ C+  +  +   +KG  R+    +A+ E+ +AQR +E  ++VD S+E
Sbjct: 58  TKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R+G G    + P+    + VHY G LL+  K   +D+ +D   +   F  G
Sbjct: 29  DEGVLKVIKREGTG---TETPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 81
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ V  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+
Sbjct: 82  KGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 137

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 96/243 (39%), Gaps = 24/243 (9%)
Query: 152 DFGVVKKVINEGQGWETP----RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
           D GV+K +  EG G E P    R       W+   T   K   S    + + F  GK EV
Sbjct: 50  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGT---KFDSSLDRKDKFSFDLGKGEV 106
Query: 208 PKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLG-- 265
            K  ++ I TM   E   I    +Y   S   P                  +  D+    
Sbjct: 107 IKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEE 166
Query: 266 DGRLIKRRIRDGKGEF-PMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
           DG +I+R    G+G   P +  + +  L  +YK  L ++ +  F            E   
Sbjct: 167 DGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRF------------EIGE 214
Query: 325 GEGL-VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
           GE L +P G E  ++ M  GE ++V   P YA+    +    +P  A +++E+ L  FEK
Sbjct: 215 GENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEK 274
Query: 383 PKD 385
            K+
Sbjct: 275 AKE 277

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           DG ++K   ++G+G   +  P   + + VHY G L N  K   +D+  D  G    F+ G
Sbjct: 13  DGGVLKLIKKEGQG---VVKPTTGTTVKVHYVGTLENGTK---FDSSRDR-GDQFSFNLG 65
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 378
            G V +G+++ V  M  GE+A  T   DY Y     P  +P GA + +E+EL 
Sbjct: 66  RGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELF 118

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML N +K   +D+  D + +P +F  G+  V +GFE     M  G+ 
Sbjct: 16  PKKGQTCVVHYTGMLQNGKK---FDSSRDRN-KPFKFRIGKQEVIKGFEEGAAQMSLGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +TC PD AY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE 107

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P    +  VHY G L   + KVF  +R    G+P  F+ G G V  G++  V  M  G+ 
Sbjct: 17  PKAGQVAVVHYTGTL--ADGKVFDSSRTR--GKPFRFTVGRGEVIRGWDEGVAQMSVGQR 72
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A + C PDYAY     P  +P  A + +++ELL  E
Sbjct: 73  AKLVCSPDYAYGSRGHPGVIPPNATLTFDVELLRVE 108

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  GFE  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGFEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL---LHLNVAACL 457
           I+  GN  FK+ +   A  KY++ L  F H    DD+   +   K+N+    +LN+A C 
Sbjct: 41  IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--ILLDKKKNIEISCNLNLATCY 98
Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDF 504
            K  +  K+I+  +KVL  +  +VK LY+ G+A M  G  EEA+ + 
Sbjct: 99  NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL 145

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 18/125 (14%)
Query: 393 GIMD---EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLL 449
           G MD    AE  +  GN  +K+G ++ A   Y+K L     ++P +              
Sbjct: 1   GAMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALE----LDPNNASA----------- 45
Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
             N+     K G+ +K+IE   K L+ +P + K  YRRG AY   G++++A  D++  ++
Sbjct: 46  WYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALE 105
Query: 510 VDKSS 514
           +D ++
Sbjct: 106 LDPNN 110

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG---KRNLLHLNVAACL 457
           I   GNRL++EG  + A AKY   +    ++  ++      ++    +   L LN   C 
Sbjct: 11  IHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCK 70
Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
           L + E  + ++ C+ +L+    +VK  ++RG A+ A+   +EAQ DF  ++++D +  P
Sbjct: 71  LVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAP 129

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFVLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPNATLIFDVELLKLE 107

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL 458
           E++R  GN LFK G +  A A Y + L       PQD          + +LH N AAC L
Sbjct: 29  EQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQD----------QAVLHRNRAACHL 76
Query: 459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           KL +  K+    +K ++ +   VK LYRR  A   LG  ++A  D +  + ++  ++
Sbjct: 77  KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG---KRNLLHLNVAACL 457
           I   GNRL++EG  + A AKY   +    ++  ++      ++    +   L LN   C 
Sbjct: 17  IHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCK 76
Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
           L + E  + ++ C+ +L+    +VK  ++RG A+ A+   +EAQ DF  ++++D +  P
Sbjct: 77  LVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAP 135

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 18  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 73
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 74  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 109

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGLEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDKN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGVPGIIPPHATLVFDVELLKLE 107

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKAGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G++  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWQEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           DG ++K  +R G+G    + P   + + VHY G L     KVF  +R  N   P +F  G
Sbjct: 14  DGGVVKTILRKGEG-GEENAPKKGNEVTVHYVGKL-ESSGKVFDSSRERN--VPFKFHLG 69
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
           +G V +G+++CV  M   E   V     Y Y +     ++P  + + +EIEL+ F
Sbjct: 70  QGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+   V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWAEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  + KKV  D+  D + +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML-EDGKKV--DSSRDRN-KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML + +K    D+  D + +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGMLEDGKK---MDSSRDRN-KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 157 KKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGI 215
           KKV+  G G   P+A  +V      +  DGK   S R  G+P+ FT G  EV KG + G+
Sbjct: 28  KKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGV 87
Query: 216 GTMTREEKAVIYVTSQ 231
            TMT  EKA+  +  Q
Sbjct: 88  ATMTLGEKALFTIPYQ 103

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 268 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG 327
           +L K+ +  G G   +  P     + VHY G     + K F  +R  + G+P +F+ G G
Sbjct: 25  QLEKKVLTPGDG---VTKPQAGKKVTVHYDGRF--PDGKQFDSSR--SRGKPFQFTLGAG 77
Query: 328 LVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 378
            V +G++  V  M  GE AL T P   AY +   P  +P  A + +E+ELL
Sbjct: 78  EVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELL 128

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           +G +   RI  G G      P    L+ +HY G L N +K   +D+ VD  G P + + G
Sbjct: 5   EGNVKIDRISPGDGA---TFPKTGDLVTIHYTGTLENGQK---FDSSVDR-GSPFQCNIG 57
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 378
            G V +G+++ +  +  GE A +T P  YAY     P  +P  + + +++ELL
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD--EEGKVFVGKRNL- 448
           D  +   E +R  GN LF +  ++ A   Y   L   + +  ++   E   V + ++N+ 
Sbjct: 5   DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64
Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
           L+ N++ C L +G+  ++ E  ++VL     + K L+RR  A +A  + +EA+ D ++++
Sbjct: 65  LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124
Query: 509 K 509
           +
Sbjct: 125 R 125

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 21/140 (15%)
Query: 368 GAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427
           G+H+  E ++   +      GLS       A +++  GN  F    F  A   Y+  +  
Sbjct: 1   GSHMNGEPDIAQLK------GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE- 53
Query: 428 FNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 487
              ++P +            + + N++AC +  G+  K IE   K L+  P H K L RR
Sbjct: 54  ---LDPNEP-----------VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRR 99
Query: 488 GMAYMALGEFEEAQRDFEMM 507
             A  +LG F +A  D  ++
Sbjct: 100 ASANESLGNFTDAMFDLSVL 119

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 388 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRN 447
           GLS       A +++  GN  F    F  A   Y+  +     ++P +            
Sbjct: 11  GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE----LDPNEP----------- 55
Query: 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 507
           + + N++AC +  G+  K IE   K L+  P H K L RR  A  +LG F +A  D  ++
Sbjct: 56  VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 115

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
           + VHY G L + +K  F  ++  ND  P EF  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK--FDSSKDRND--PFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D A  ++  GN  F++G +  A   Y + ++     NP+D +           L+ N AA
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKDAK-----------LYSNRAA 58
Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           C  KL E + +++ C + +   P  +KG  R+  A  A+ ++ +A   ++  + +D S +
Sbjct: 59  CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118
Query: 516 PDA 518
             A
Sbjct: 119 EAA 121

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           ++  DG +IK  ++ G  E   + P   + + VHY G L  E     +D+  D +  P +
Sbjct: 11  ELTADGGVIKTILKKGD-EGEENIPKKGNEVTVHYVGKL--ESTGKVFDSSFDRN-VPFK 66
Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
           F   +G V +G+++CV  M   E  LV     Y Y       ++P  + + +EIELL F
Sbjct: 67  FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           ++  DG +IK  ++ G  E   + P   + + VHY G L  E     +D+  D +  P +
Sbjct: 11  ELTADGGVIKTILKKGD-EGEENIPKKGNEVTVHYVGKL--ESTGKVFDSSFDRN-VPFK 66
Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
           F   +G V +G+++CV  M   E  LV     Y Y       ++P  + + +EIELL F
Sbjct: 67  FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
           + VHY G L + +K  F  ++  ND  P  F  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK--FDSSKDRND--PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAAGVIPPNATLVFEVELL 207

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
           + VHY G L + +K  F  ++  ND  P  F  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK--FGSSKDRND--PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
           + VHY G L + +K  F  ++  ND  P  F  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK--FDSSKDRND--PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
           + VHY G L + +K  F  ++  ND  P  F  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK--FDSSKDRND--PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 291 LLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTC 350
           +L +HY G L   E    +D+ +  + QP  FS G G V +G++  +  M  GE   +  
Sbjct: 11  VLHMHYTGKL---EDGTEFDSSLPQN-QPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVI 66
Query: 351 PPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382
           P +  Y +   P  +P GA + +E+ELL  E+
Sbjct: 67  PSELGYGERGAPPKIPGGATLVFEVELLKIER 98

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 12/124 (9%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D ++ K+ I++G G  P       S   +HY+    N + K F DT   ++ QP+E   G
Sbjct: 48  DEKVSKQIIKEGHGSKPSKY----STCFLHYRAWTKNSQHK-FEDTW--HEQQPIELVLG 100
Query: 326 -EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK---FLRPANVPEGAHIQWEIELLGFE 381
            E     G  + V  M  GE ALV    + AY K   F  P NVP  A + +E+E++GF+
Sbjct: 101 KEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFP-NVPPMADLLYEVEVIGFD 159
Query: 382 KPKD 385
           + K+
Sbjct: 160 ETKE 163

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 54  HC--TVRTLDGVIVES---TRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFK 108
           HC  T    DG + ++   T ++      P+   +G  K++ G  E + TM KGE +  +
Sbjct: 24  HCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLE 83
Query: 109 MKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           ++P+  YG+   P A     P + +L FE+E++D 
Sbjct: 84  IEPEWAYGKKGQPDAK---IPPNAKLTFEVELVDI 115

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 54  HC--TVRTLDGVIVES---TRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFK 108
           HC  T    DG + ++   T S+      P+   +G  K++ G  E + TM KGE +  +
Sbjct: 27  HCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLE 86
Query: 109 MKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           ++P+  YG+   P A     P + +L FE+E++D 
Sbjct: 87  IEPEWAYGKKGQPDAK---IPPNTKLIFEVELVDI 118

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 259 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQ 318
           ++ D+ GD  ++K  IR+G G    D    D+ + V Y G L + ++   +D+       
Sbjct: 18  RMLDISGDRGVLKDVIREGAG----DLVAPDASVLVKYSGYLEHMDRP--FDSNYFRK-T 70
Query: 319 PLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 378
           P     GE +   G E+ +  M  GE+A     P+YAY     P  +P    + +EIELL
Sbjct: 71  PRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELL 130
Query: 379 GF 380
            F
Sbjct: 131 DF 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	553
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	4e-91
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	3e-26
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	2e-86
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	2e-17
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	5e-13
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-70
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-12
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-11
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-66
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	4e-12
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	4e-11
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	7e-43
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	3e-40
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	4e-33
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	6e-32
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	6e-28
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	2e-15
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-29
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-25
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-25
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	6e-25
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-24
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-24
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	7e-24
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	5e-16
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	1e-11
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	8e-24
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-23
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-23
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-08
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-22
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-10
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	4e-21
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	1e-14
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	3e-10
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-21
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-20
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	4e-20
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	9e-16
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	4e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-07
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	4e-18
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	2e-17
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	2e-14
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	2e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-07
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	1e-16
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	4e-14
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	2e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-16
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-04
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	2e-16
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	5e-15
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	5e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-04
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	2e-16
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	4e-15
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	2e-08
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	8e-16
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	1e-11
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	3e-07
2ppn_A	107	FK506-binding protein 1A; high resolution protein	1e-15
2ppn_A	107	FK506-binding protein 1A; high resolution protein	7e-14
2ppn_A	107	FK506-binding protein 1A; high resolution protein	3e-08
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-15
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	2e-15
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	4e-14
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	5e-09
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	2e-15
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	4e-14
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	4e-09
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	3e-15
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	4e-09
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	3e-04
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-14
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-13
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	3e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-14
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-04
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	1e-13
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	3e-13
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	3e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-13
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	5e-13
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	9e-07
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	3e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	3e-11
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	9e-08
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	4e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-06
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	3e-11
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	7e-08
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	3e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-10
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-10
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-10
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-05
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	1e-09
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	3e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	8e-07
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	2e-09
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	1e-06
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	8e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-09
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	2e-09
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	3e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-06
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	3e-09
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	5e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	9e-09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	9e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-08
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	8e-08
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	2e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-05
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	5e-07
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	7e-07
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	6e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	8e-06
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-05
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	3e-05
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	3e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-04
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	2e-04
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	2e-04
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	2e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	2e-04
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	3e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-04

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  286 bits (733), Expect = 4e-91
 Identities = 103/429 (24%), Positives = 184/429 (42%), Gaps = 21/429 (4%)

Query: 124 APSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKT 183
                 K+ E      + +  +      D GV+K V   G G ETP    +V      K 
Sbjct: 2   TTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 61

Query: 184 GDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT-PSPLMPV 241
            +GK   S  +  EP+ F+ GK +V K  ++G+ TM R E   +    +Y    +  +P 
Sbjct: 62  SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPK 121

Query: 242 VEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLL 301
           +     + FE+EL+           G + + + +      P +     + + +H +G   
Sbjct: 122 IPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEG----ATVEIHLEGRC- 176

Query: 302 NEEKKVFYDTRVDNDGQPLEFSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAY-D 357
               ++F       D + + F+ GEG    +P G +  +  M   E  ++   P Y + +
Sbjct: 177 --GGRMF-------DCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGE 227

Query: 358 KFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELA 417
                  +   A + +E+ L  FEK K+   +     +++A  ++  G   FK GK+  A
Sbjct: 228 AGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQA 287

Query: 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477
             +Y K++          ++E K          LN+A C LKL E  K++E C+K L  +
Sbjct: 288 VIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347

Query: 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLE 537
            A+ KGLYRRG A + + EFE A+ DFE +++V+  ++  A   +S  +K+ ++   R  
Sbjct: 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK-AARLQISMCQKKAKEHNERDR 406

Query: 538 NSLKGCLTR 546
                   +
Sbjct: 407 RIYANMFKK 415

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  110 bits (277), Expect = 3e-26
 Identities = 62/266 (23%), Positives = 117/266 (43%), Gaps = 21/266 (7%)

Query: 2   AVEDEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLD 61
             ++ + +P    A   +D    K     ++K V R G G+ TP  GD+V  H   +  +
Sbjct: 6   GAKNNEESPTATVAEQGEDITSKK--DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSN 63

Query: 62  GVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCP 121
           G   +S+      +  P    LGK +++     G+ TM +GE+     KP+  YG     
Sbjct: 64  GKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGS- 118

Query: 122 VAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISA 181
                  P +  L FEIE++DF K + + +D G++++   +G+G+  P     V+  +  
Sbjct: 119 ---LPKIPSNATLFFEIELLDF-KGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEG 174

Query: 182 KTGDGKLILSHREGEPYFFTFGK---SEVPKGLEMGIGTMTREEKAVIYVTSQYL--TPS 236
           + G         +     FT G+    ++P G++  +  M REE+ ++Y+  +Y      
Sbjct: 175 RCGGRMF-----DCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAG 229

Query: 237 PLMPVVEGCEEVHFEVELVHLIQVRD 262
                +E   E+ +EV L    + ++
Sbjct: 230 KPKFGIEPNAELIYEVTLKSFEKAKE 255

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  270 bits (693), Expect = 2e-86
 Identities = 107/367 (29%), Positives = 176/367 (47%), Gaps = 25/367 (6%)

Query: 24  MKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVL 83
            +I    L K +++ G G  TP  GD+V  H T   LDG   +S+R     +    +  L
Sbjct: 6   NEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRD----RDDTFKFKL 61

Query: 84  GKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           G+ +++ G  +GI TM KGE ++F + P++ YGE   P     T P +  L F++E++ +
Sbjct: 62  GQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPP----TIPANATLQFDVELLSW 117

Query: 144 AKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFG 203
              + IA D G+ KK++ EG  WE P+ P EV     A+  DG ++          FT  
Sbjct: 118 TSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSE---GVEFTVK 174

Query: 204 KSEVPKGLEMGIGTMTREEKAVIYVTSQY------LTPSPLMPVVEGCEEVHFEVELVHL 257
              +   L   + TM + EK ++ V  QY         +     V     +  ++ELV  
Sbjct: 175 DGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSW 234

Query: 258 IQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDG 317
             V ++  D +++K+ +++ +     + P   +++ V   G L +    VF     D + 
Sbjct: 235 KTVTEIGDDKKILKKVLKEXE---GYERPNEGAVVTVKITGKLQD--GTVFLKKGHD-EQ 288

Query: 318 QPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK--FLRPANVPEGAHIQWEI 375
           +P EF + E  V EG +  V  M  GE+ALVT PP+YAY      + A VP  + + +E+
Sbjct: 289 EPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEV 348

Query: 376 ELLGFEK 382
           EL+ F K
Sbjct: 349 ELVSFVK 355

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 83.3 bits (206), Expect = 2e-17
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 12/164 (7%)

Query: 264 LGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFS 323
           +G   L K+ +++G+G    D P     + VHY G LL+   K F  +R  +     +F 
Sbjct: 8   IGKQGLKKKLLKEGEGW---DTPEVGDEVEVHYTGTLLD--GKKFDSSR--DRDDTFKFK 60

Query: 324 SGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKP 383
            G+G V +G++  ++ M  GE AL T PP+ AY +   P  +P  A +Q+++ELL +   
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 120

Query: 384 KDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427
           +D             +KI   G++       +    KYE  L D
Sbjct: 121 RDI-----AKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLED 159

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 69.5 bits (170), Expect = 5e-13
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 7/129 (5%)

Query: 18  EDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDG-VIVESTRSEYGGKG 76
                        ++K V++   G   P++G  V    T +  DG V ++    E     
Sbjct: 233 SWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDE----Q 288

Query: 77  IPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHF 136
            P      +  ++ GL   +  M KGEV++  + P+  YG  +      +  P +  + +
Sbjct: 289 EPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESK--QDAIVPPNSTVIY 346

Query: 137 EIEMIDFAK 145
           E+E++ F K
Sbjct: 347 EVELVSFVK 355

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  228 bits (582), Expect = 3e-70
 Identities = 79/289 (27%), Positives = 145/289 (50%), Gaps = 18/289 (6%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
            M  DG +I+R    G+G      P   +++ V  +G   ++   +F       D + L 
Sbjct: 20  HMEEDGGIIRRIQTRGEGY---AKPNEGAIVEVALEGYYKDK---LF-------DQRELR 66

Query: 322 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKF-LRPANVPEGAHIQWEIEL 377
           F  GEG    +P G E  ++ M  GE ++V   P YA+         +P  A +++E+ L
Sbjct: 67  FEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHL 126

Query: 378 LGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE 437
             FEK K+   ++ +  ++++  ++  G   FKEGK++ A  +Y+K++    + +   +E
Sbjct: 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE 186

Query: 438 EGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 497
           E +     R   HLN+A C LKL     +IE+CNK L+ +  + KGL RRG A++A+ +F
Sbjct: 187 EAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDF 246

Query: 498 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTR 546
           E A+ DF+ ++++  ++   A   L+  +++ R+   R +        R
Sbjct: 247 ELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLAREKKLYANMFER 294

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 16/122 (13%)

Query: 29  GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLG---K 85
           G +++ +   G G + P++G  V         D +  +            +R  +G    
Sbjct: 25  GGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQR----------ELRFEIGEGEN 74

Query: 86  SKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK 145
             +  GL   I  M KGE S+  +KP   +G            P + EL +E+ +  F K
Sbjct: 75  LDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE---KFQIPPNAELKYELHLKSFEK 131

Query: 146 AK 147
           AK
Sbjct: 132 AK 133

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 16/129 (12%)

Query: 139 EMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPY 198
                     + +D G+++++   G+G+  P     V+  +     D        +    
Sbjct: 17  RGSH------MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF-----DQREL 65

Query: 199 FFTFG---KSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP--VVEGCEEVHFEVE 253
            F  G     ++P GLE  I  M + E +++Y+   Y   S       +    E+ +E+ 
Sbjct: 66  RFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELH 125

Query: 254 LVHLIQVRD 262
           L    + ++
Sbjct: 126 LKSFEKAKE 134

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  217 bits (555), Expect = 2e-66
 Identities = 90/336 (26%), Positives = 148/336 (44%), Gaps = 26/336 (7%)

Query: 217 TMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRD 276
           T T ++++ I      +  S          +V  E E+           D ++ K+ I++
Sbjct: 9   TQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEV----------LDEKVSKQIIKE 58

Query: 277 GKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG-EGLVPEGFEM 335
           G G  P       S   +HY+    N +   F DT   ++ QP+E   G E     G  +
Sbjct: 59  GHGSKPSKY----STCFLHYRAWTKNSQH-KFEDTW--HEQQPIELVLGKEKKELAGLAI 111

Query: 336 CVRLMLPGEIALVTCPPDYAYDKFLRPA--NVPEGAHIQWEIELLGFEKPK---DWTGLS 390
            V  M  GE ALV    + AY K    +  NVP  A + +E+E++GF++ K     + ++
Sbjct: 112 GVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMT 171

Query: 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR--DFNHVNPQDDEEGKVFVGKRNL 448
            +  +  A++ ++ GN LFKE K E A  +YE  +     + +     +   + +  +N 
Sbjct: 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP 231

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
            HLN+AACL+KL    ++I  CN VL     + K L+RRG A   LG+ + A+ DF    
Sbjct: 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291

Query: 509 KVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCL 544
           K            L  L +Q + L  + +   KG  
Sbjct: 292 KYAPDD-KAIRRELRALAEQEKALYQKQKEMYKGIF 326

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 66.6 bits (162), Expect = 4e-12
 Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 9/156 (5%)

Query: 107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGW 166
            + + Q H  E +      +    +     E  +     ++    D  V K++I EG G 
Sbjct: 5   LEHQTQTHDQESEIVTEGSAVVHSEPS--QEGNVPPKVDSEAEVLDEKVSKQIIKEGHG- 61

Query: 167 ETPRAPYEVKAWISAKTGDGKLIL--SHREGEPYFFTFGKS-EVPKGLEMGIGTMTREEK 223
             P           A T + +     +  E +P     GK  +   GL +G+ +M   E+
Sbjct: 62  SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGER 121

Query: 224 AVIYVTSQYL---TPSPLMPVVEGCEEVHFEVELVH 256
           A+++V  +       +   P V    ++ +EVE++ 
Sbjct: 122 ALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIG 157

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 63.5 bits (154), Expect = 4e-11
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 9/147 (6%)

Query: 9   NPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDG-VIVES 67
            P ++           +++   + K +++ G G   PS       H    T +     E 
Sbjct: 29  EPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFED 87

Query: 68  TRSEYGGKGIPIRHVLGKS-KILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPS 126
           T  E      PI  VLGK  K L GL  G+ +M  GE ++  +  ++ YG++     +  
Sbjct: 88  TWHE----QQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNF--SFP 141

Query: 127 TFPKDEELHFEIEMIDFAKAKIIADDF 153
             P   +L +E+E+I F + K      
Sbjct: 142 NVPPMADLLYEVEVIGFDETKEGKARS 168

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  151 bits (382), Expect = 7e-43
 Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 3/169 (1%)

Query: 376 ELLGFEKPKDWTG-LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQ 434
           E L F+  K      + +  +  A  I+  GN  FK+ +   A  KY++ L  F H    
Sbjct: 15  ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW 74

Query: 435 DDEEGKVFVGK-RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493
           DD+             +LN+A C  K  +  K+I+  +KVL  +  +VK LY+ G+A M 
Sbjct: 75  DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY 134

Query: 494 LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKG 542
            G  EEA+ +      ++ ++  D   +      + ++ + + + +  G
Sbjct: 135 FGFLEEAKENLYKAASLNPNN-LDIRNSYELCVNKLKEARKKDKLTFGG 182

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  142 bits (360), Expect = 3e-40
 Identities = 31/156 (19%), Positives = 68/156 (43%), Gaps = 3/156 (1%)

Query: 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP---QDDEEGKVFVGKR 446
           + D  +   E +R  GN LF +  ++ A   Y   L   + +       + E      K 
Sbjct: 3   AEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN 62

Query: 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 506
             L+ N++ C L +G+  ++ E  ++VL     + K L+RR  A +A  + +EA+ D ++
Sbjct: 63  IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKL 122

Query: 507 MMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKG 542
           +++   ++       +  + ++R + K     +   
Sbjct: 123 LLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSK 158

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  129 bits (325), Expect = 4e-33
 Identities = 40/149 (26%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE-GKVFVGKRNL 448
             D I+  +E ++  GN  FK   +E+A  KY KVLR         ++  G         
Sbjct: 215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALS 274

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
             LN+ AC LK+ + + ++++C + L+ +P++ K LYRR   +  L E+++A  D +   
Sbjct: 275 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 334

Query: 509 KVDKSSEPDATAALSKLKKQRRKLKVRLE 537
           ++     P+  A  ++L K ++K+K + +
Sbjct: 335 EIA----PEDKAIQAELLKVKQKIKAQKD 359

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  123 bits (311), Expect = 6e-32
 Identities = 67/267 (25%), Positives = 102/267 (38%), Gaps = 27/267 (10%)

Query: 130 KDEELHFEIEMIDFAKAKI-IADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKL 188
           K  E   +   +      I    D GV+K +  EG G E P     V    +    DG  
Sbjct: 27  KATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTK 86

Query: 189 ILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEG 244
             S  +  + + F  GK EV K  ++ I TM   E   I    +Y      SP  P +  
Sbjct: 87  FDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSP--PKIPP 144

Query: 245 CEEVHFEVELVHLIQVRD--MLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLN 302
              + FEVEL              G + + + R      P +     +++ V  +G   +
Sbjct: 145 NATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNE----GAIVEVALEGYYKD 200

Query: 303 EEKKVFYDTRVDNDGQPLEFSSGEGLV---PEGFEMCVRLMLPGEIALVTCPPDYAY-DK 358
              K+F       D + L F  GEG     P G E  ++ M  GE ++V   P YA+   
Sbjct: 201 ---KLF-------DQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSV 250

Query: 359 FLRPANVPEGAHIQWEIELLGFEKPKD 385
                 +P  A +++E+ L  FEK K+
Sbjct: 251 GKEKFQIPPNAELKYELHLKSFEKAKE 277

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  112 bits (281), Expect = 6e-28
 Identities = 59/270 (21%), Positives = 104/270 (38%), Gaps = 22/270 (8%)

Query: 1   MAVEDEDINPQKKKAPSEDDKRRMKIV-PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRT 59
            A E +      + AP   +   +       ++K + R G G   P  GD+V  H T   
Sbjct: 22  TAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWL 81

Query: 60  LDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDD 119
           LDG   +S+      +       LGK +++      I TM  GEV     KP+  YG   
Sbjct: 82  LDGTKFDSSLD----RKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAG 137

Query: 120 CPVAAPSTFPKDEELHFEIEMID-FAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAW 178
               +P   P +  L FE+E+ +   +     +D G+++++   G+G+  P     V+  
Sbjct: 138 ----SPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVA 193

Query: 179 ISAKTGDGKLILSHREGEPYFFTFGKSEV---PKGLEMGIGTMTREEKAVIYVTSQYL-- 233
           +     D        +     F  G+ E    P GLE  I  M + E +++Y+   Y   
Sbjct: 194 LEGYYKDKLF-----DQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFG 248

Query: 234 -TPSPLMPVVEGCEEVHFEVELVHLIQVRD 262
                    +    E+ +E+ L    + ++
Sbjct: 249 SVGKEKF-QIPPNAELKYELHLKSFEKAKE 277

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 75.7 bits (186), Expect = 2e-15
 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            D  ++K   R+G G    + P+    + VHY G LL+     F  +   +      F  
Sbjct: 49  QDEGVLKVIKREGTGT---EMPMIGDRVFVHYTGWLLD--GTKFDSSL--DRKDKFSFDL 101

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPK 384
           G+G V + +++ +  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+   
Sbjct: 102 GKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGED 161

Query: 385 DWTGLSFDGIMDEAEK 400
                    I     +
Sbjct: 162 LTEEEDGGIIRRIQTR 177

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  111 bits (280), Expect = 3e-29
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 454
               E++R  GN LFK G +  A A Y + L     ++    ++          LH N A
Sbjct: 25  ASSVEQLRKEGNELFKCGDYGGALAAYTQALG----LDATPQDQAV--------LHRNRA 72

Query: 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514
           AC LKL +  K+    +K ++ +   VK LYRR  A   LG  ++A  D +  + ++  +
Sbjct: 73  ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132

Query: 515 EPDATAALSKLKK 527
           +     AL  +  
Sbjct: 133 K-VFQEALRNISG 144

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =   99 bits (250), Expect = 2e-25
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 16/134 (11%)

Query: 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 454
           M++  +++  GN+    G  + A   Y + ++    ++P +           ++L+ N +
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHN-----------HVLYSNRS 45

Query: 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514
           A   K G+ +K+ E   K +D  P   KG  R+  A   L  FEEA+R +E  +K + ++
Sbjct: 46  AAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

Query: 515 EPDATAALSKLKKQ 528
                  L  ++ +
Sbjct: 106 P-QLKEGLQNMEAR 118

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 99.7 bits (249), Expect = 3e-25
 Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 17/137 (12%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
           +AE+ R+ G   F +  +  A   Y ++++      P+D              + N AA 
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPED-----------ARGYSNRAAA 47

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
           L KL    ++I  CNK ++ +P  V+   R+  A +A+ E+  A    +     D   E 
Sbjct: 48  LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA--EV 105

Query: 517 DATAALSKLKKQRRKLK 533
           +  ++  ++ +   K  
Sbjct: 106 NNGSSAREIDQLYYKAS 122

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 99.3 bits (248), Expect = 6e-25
 Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 16/144 (11%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
             A++++  GNRLF   K+  A A Y + +      NP              + + N A 
Sbjct: 7   PSAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVA-----------VYYTNRAL 51

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           C LK+ +  +++  C + L+ +   VK  +  G   + +  ++EA  + +    + K   
Sbjct: 52  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111

Query: 516 PDATAALSK-LKKQRRKLKVRLEN 538
            +    +   L+  ++K    +E 
Sbjct: 112 LNFGDDIPSALRIAKKKRWNSIEE 135

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 98.1 bits (245), Expect = 1e-24
 Identities = 33/132 (25%), Positives = 68/132 (51%), Gaps = 16/132 (12%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           + A++ +  GN  FK+G +  A   Y + ++     +P++            +L+ N AA
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK----RDPEN-----------AILYSNRAA 55

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           CL KL E +++++ C+  +  +   +KG  R+    +A+ E+ +AQR +E  ++VD S+E
Sbjct: 56  CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

Query: 516 PDATAALSKLKK 527
            +A   +    +
Sbjct: 116 -EAREGVRNCLR 126

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 96.9 bits (242), Expect = 4e-24
 Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 16/135 (11%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D A  ++  GN  F++G +  A   Y + ++     NP+D             L+ N AA
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIK----RNPKD-----------AKLYSNRAA 58

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           C  KL E + +++ C + +   P  +KG  R+  A  A+ ++ +A   ++  + +D S +
Sbjct: 59  CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118

Query: 516 PDATAALSKLKKQRR 530
            +A     +    + 
Sbjct: 119 -EAADGYQRCMMAQY 132

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 96.2 bits (240), Expect = 7e-24
 Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 11/130 (8%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           D+LG+G L K+ +  G        P+   ++ VH +  L N        TRV      L 
Sbjct: 12  DILGNGLLRKKTLVPGPP--GSSRPVKGQVVTVHLQTSLEN-------GTRVQE-EPELV 61

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY-DKFLRPANVPEGAHIQWEIELLGF 380
           F+ G+  V +  ++ V LM  GE A+VT    Y Y  +  R   +P  A +  E+ L   
Sbjct: 62  FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTA 121

Query: 381 EKPKDWTGLS 390
               D     
Sbjct: 122 VDRPDLEMSG 131

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 73.9 bits (182), Expect = 5e-16
 Identities = 27/140 (19%), Positives = 43/140 (30%), Gaps = 13/140 (9%)

Query: 15  APSEDDKRRMKIVP-GSLMKAVMRPG-GGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEY 72
           +     +  + I+  G L K  + PG  G S P  G  V  H      +G  V+      
Sbjct: 2   SSGSSGEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP--- 58

Query: 73  GGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDE 132
                 +   LG   ++  L   +P M  GE +M     +  YG            P   
Sbjct: 59  -----ELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSR---SPYIPPHA 110

Query: 133 ELHFEIEMIDFAKAKIIADD 152
            L  E+ +        +   
Sbjct: 111 ALCLEVTLKTAVDRPDLEMS 130

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 14/126 (11%)

Query: 149 IADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
           I  +  + KK +  G      P     V   +     +G  +          FT G  +V
Sbjct: 13  ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE---EPELVFTLGDCDV 69

Query: 208 PKGLEMGIGTMTREEKAVIYVTSQY------LTPSPLMPVVEGCEEVHFEVELVHLIQVR 261
            + L++ +  M   E A++   S+Y             P +     +  EV L   +   
Sbjct: 70  IQALDLSVPLMDVGETAMVTADSKYCYGPQGSRS----PYIPPHAALCLEVTLKTAVDRP 125

Query: 262 DMLGDG 267
           D+   G
Sbjct: 126 DLEMSG 131

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 97.1 bits (242), Expect = 8e-24
 Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 16/139 (11%)

Query: 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 454
           +  AE+++   N  FK   +E A   Y + +     +NP +            + + N +
Sbjct: 10  LKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSNA-----------IYYGNRS 54

Query: 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514
              L+      ++    + ++ +  ++KG YRR  + MALG+F  A RD+E ++KV    
Sbjct: 55  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114

Query: 515 EPDATAALSKLKKQRRKLK 533
           + DA     +  K  ++  
Sbjct: 115 K-DAKMKYQECNKIVKQKA 132

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 95.7 bits (239), Expect = 1e-23
 Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 19/138 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            EAE+++  GN   K   FE A   Y K +     +NP +                N AA
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKAIE----LNPANAV-----------YFCNRAA 54

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
              KLG    +++ C + +  +PA+ K   R G+A  +L +  EA   ++  +++D    
Sbjct: 55  AYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD---- 110

Query: 516 PDATAALSKLKKQRRKLK 533
           PD     S LK    KL+
Sbjct: 111 PDNETYKSNLKIAELKLR 128

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 98.9 bits (247), Expect = 9e-23
 Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 20/156 (12%)

Query: 382 KPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV 441
                   +    + +  K+  +   L ++G++  A +KYE V++      P   E    
Sbjct: 218 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK----TEPSVAEY--- 270

Query: 442 FVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ 501
                      +  C  K  +  ++I  C++VL   P +V  L  R  AY+    ++EA 
Sbjct: 271 ----TVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI 326

Query: 502 RDFEMMMKVDKSSEPDATA------ALSKLKKQRRK 531
           +D+E   + +++   D         A   LK+ +++
Sbjct: 327 QDYEAAQEHNEN---DQQIREGLEKAQRLLKQSQKR 359

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 23/155 (14%), Positives = 51/155 (32%), Gaps = 20/155 (12%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
           + EK    G +L   G+   A +++   +      +P +              +   A  
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDNYI-----------AYYRRATV 46

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
            L +G+ + ++    KV+           +RG   +  G+ +EA+ DF+ ++K +    P
Sbjct: 47  FLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN----P 102

Query: 517 DATAALSKLKKQRRKLKVRLENSLKGCLTRSLGKF 551
                    + Q  K         +         +
Sbjct: 103 SEQEEKE-AESQLVKADEMQRLRSQALDAFDGADY 136

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 75.4 bits (186), Expect = 5e-15
 Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 26/173 (15%)

Query: 382 KPKD---WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE 438
            P +       S     DE +++R      F    +  A    +K+L     V   D E 
Sbjct: 101 NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE----VCVWDAE- 155

Query: 439 GKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE 498
                     L    A C +K GE RK+I            + +  Y+    Y  LG+ E
Sbjct: 156 ----------LRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205

Query: 499 EAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSLGKF 551
            +  +    +K+D     D     +  K+ ++  K+              G++
Sbjct: 206 LSLSEVRECLKLD----QDHKRCFAHYKQVKKLNKLI----ESAEELIRDGRY 250

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.4 bits (129), Expect = 7e-08
 Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 36/155 (23%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                KEG+   A +  +   +    +   + E               ++    +LG+  
Sbjct: 161 AECFIKEGEPRKAISDLKAASK----LKSDNTE-----------AFYKISTLYYQLGDHE 205

Query: 465 KSIEACNKVLDANPAH------------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512
            S+    + L  +  H            +  L       +  G + +A   +E +MK + 
Sbjct: 206 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE- 264

Query: 513 SSEPDATAALSKLKKQR----RKLKVRLENSLKGC 543
              P       + K++      K + +   +++ C
Sbjct: 265 ---PSVAEYTVRSKERICHCFSKDE-KPVEAIRIC 295

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 95.4 bits (237), Expect = 5e-22
 Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 15/138 (10%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
             A++++  GNRLF   K+  A A Y + +      NP              + + N A 
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVA-----------VYYTNRAL 46

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           C LK+ +  +++  C + L+ +   VK  +  G   + +  ++EA  + +    + K   
Sbjct: 47  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

Query: 516 PDATAALSKLKKQRRKLK 533
            +    +    +  +K +
Sbjct: 107 LNFGDDIPSALRIAKKKR 124

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 90.9 bits (226), Expect = 1e-21
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 16/139 (11%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            E++K++  GN      ++  A   Y + L     + P +            +   N AA
Sbjct: 9   PESDKLKSEGNAAMARKEYSKAIDLYTQALS----IAPAN-----------PIYLSNRAA 53

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
                G+  K+ E        +P + K   R G+A   + +++ A+  +E  ++ + +  
Sbjct: 54  AYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113

Query: 516 PDAT-AALSKLKKQRRKLK 533
            DA    L   K++  +  
Sbjct: 114 SDAMKRGLETTKRKIEEAN 132

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 95.9 bits (239), Expect = 2e-21
 Identities = 30/150 (20%), Positives = 63/150 (42%), Gaps = 12/150 (8%)

Query: 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 452
             + +  K+  +   L ++G++  A +KYE V++      P   E               
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMK----TEPSIAEY-------TVRSKER 300

Query: 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512
           +  C  K  +  ++I  C++VL   P +V  L  R  AY+    ++EA +D+E   + ++
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360

Query: 513 SSEPDATAALSKLKKQRRKLKVRLENSLKG 542
           +        L K ++  ++ + R    + G
Sbjct: 361 ND-QQIREGLEKAQRLLKQSQKRDYYKILG 389

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 84.7 bits (210), Expect = 1e-17
 Identities = 26/143 (18%), Positives = 55/143 (38%), Gaps = 16/143 (11%)

Query: 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLH 450
           +   M + EK    G +L   G+   A +++   +      +P +              +
Sbjct: 19  YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDNYI-----------AY 63

Query: 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
              A   L +G+ + ++    KV+           +RG   +  G+ +EA+ DF+ ++K 
Sbjct: 64  YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123

Query: 511 DKSSEPDATAALSKLKKQRRKLK 533
           + S   +   A S+L K     +
Sbjct: 124 NPSE-NEEKEAQSQLIKSDEMQR 145

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 23/169 (13%)

Query: 383 PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF 442
            ++    S     DE +++R      F  G +  A A  +K+L     V   D E     
Sbjct: 128 NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE----VCVWDAE----- 178

Query: 443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502
                 L    A C +K GE RK+I            + +  Y+    Y  LG+ E +  
Sbjct: 179 ------LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232

Query: 503 DFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSLGKF 551
           +    +K+D     D            +++K   +           G++
Sbjct: 233 EVRECLKLD----QDHKRC----FAHYKQVKKLNKLIESAEELIRDGRY 273

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 32/144 (22%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L  E  +  + A  EK                          HL +   LL  G+  
Sbjct: 10  GVDLGTENLYFQSMADVEK--------------------------HLELGKKLLAAGQLA 43

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
            ++   +  +D +P +    YRR   ++A+G+ + A  D   ++++      D TAA  +
Sbjct: 44  DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK----MDFTAARLQ 99

Query: 525 LKKQRRKLKVRLENSLKGCLTRSL 548
                 K   +L+ +      + L
Sbjct: 100 RGHLLLKQG-KLDEAED-DFKKVL 121

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 88.1 bits (219), Expect = 4e-21
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 10/120 (8%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           D+LG+G L K+ +  G        P+   ++ VH +  L N        TRV  +   L 
Sbjct: 8   DILGNGLLRKKTLVPGPP--GSSRPVKGQVVTVHLQTSLEN-------GTRVQ-EEPELV 57

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           F+ G+  V +  ++ V LM  GE A+VT    Y Y    R   +P  A +  E+ L    
Sbjct: 58  FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 69.6 bits (171), Expect = 1e-14
 Identities = 26/116 (22%), Positives = 37/116 (31%), Gaps = 13/116 (11%)

Query: 29  GSLMKAVMRPG-GGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSK 87
           G L K  + PG  G S P  G  V  H      +G  V+            +   LG   
Sbjct: 13  GLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP--------ELVFTLGDCD 64

Query: 88  ILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           ++  L   +P M  GE +M     +  YG            P    L  E+ +   
Sbjct: 65  VIQALDLSVPLMDVGETAMVTADSKYCYGPQ----GRSPYIPPHAALCLEVTLKTA 116

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 9/111 (8%)

Query: 149 IADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
           I  +  + KK +  G      P     V   +     +G  +          FT G  +V
Sbjct: 9   ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE---EPELVFTLGDCDV 65

Query: 208 PKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
            + L++ +  M   E A++   S+Y          P +     +  EV L 
Sbjct: 66  IQALDLSVPLMDVGETAMVTADSKYCYGPQGRS--PYIPPHAALCLEVTLK 114

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 88.1 bits (219), Expect = 5e-21
 Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 24/139 (17%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D A   +  GN  +K+  FE A   Y+K +     ++P +              + N AA
Sbjct: 6   DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE----LDPSNIT-----------FYNNKAA 50

Query: 456 CLLKLGECRKSIEACNKVLDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMM 508
              +  +  + ++ C K ++             K + R G A+    +   A + F   +
Sbjct: 51  VYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110

Query: 509 KVDKSSEPDATAALSKLKK 527
              +   P+    + +L+K
Sbjct: 111 SEFRD--PELVKKVKELEK 127

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 87.0 bits (216), Expect = 1e-20
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 25/147 (17%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
           +A K +  GN  +K+  F+ A   Y+K       ++P +                N AA 
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTN-----------MTYITNQAAV 47

Query: 457 LLKLGECRKSIEACNKVLDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
             + G+  K  E C K ++    +        K   R G +Y    ++++A   +   + 
Sbjct: 48  YFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107

Query: 510 VDKSSEPDATAALSKLKKQRRKLKVRL 536
             ++  PD      + +K  ++ + RL
Sbjct: 108 EHRT--PDVLKKCQQAEKILKEQE-RL 131

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 86.4 bits (214), Expect = 4e-20
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 12/127 (9%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           D+LG+G L K+ +  G        P+   ++ VH +  L N        TRV      L 
Sbjct: 38  DILGNGLLRKKTLVPGPP--GSSRPVKGQVVTVHLQTSLEN-------GTRVQE-EPELV 87

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY-DKFLRPANVPEGAHIQWEIELLGF 380
           F+ G+  V +  ++ V LM  GE A+VT    Y Y  +  R   +P  A +  E+ L   
Sbjct: 88  FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTA 147

Query: 381 -EKPKDW 386
            +     
Sbjct: 148 VDLEHHH 154

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 74.0 bits (182), Expect = 9e-16
 Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 12/148 (8%)

Query: 1   MAVEDEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPG-GGDSTPSDGDQVAYHCTVRT 59
           +A E       +       ++    +  G L K  + PG  G S P  G  V  H     
Sbjct: 15  LAREFLAAMEPEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSL 74

Query: 60  LDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDD 119
            +G  V+            +   LG   ++  L   +P M  GE +M     +  YG   
Sbjct: 75  ENGTRVQEEP--------ELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQG 126

Query: 120 CPVAAPSTFPKDEELHFEIEMIDFAKAK 147
              +     P    L  E+ +      +
Sbjct: 127 ---SRSPYIPPHAALCLEVTLKTAVDLE 151

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 54.8 bits (132), Expect = 4e-09
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 149 IADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
           I  +  + KK +  G      P     V   +     +G  +          FT G  +V
Sbjct: 39  ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE---EPELVFTLGDCDV 95

Query: 208 PKGLEMGIGTMTREEKAVIYVTSQY------LTPSPLMPVVEGCEEVHFEVELV 255
            + L++ +  M   E A++   S+Y             P +     +  EV L 
Sbjct: 96  IQALDLSVPLMDVGETAMVTADSKYCYGPQGSRS----PYIPPHAALCLEVTLK 145

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 80.8 bits (200), Expect = 1e-18
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 21/126 (16%)

Query: 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 454
           M + EK +  GN LFK+G +  A   Y++++       PQ+            + + N A
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLIT----AQPQN-----------PVGYSNKA 45

Query: 455 ACLLKLGECRKSIEACNKVLDANPAHVKGL------YRRGMAYMALGEFEEAQRDFEMMM 508
             L+KLGE  ++I+ C + L                YR  +A  A+G  +    + + + 
Sbjct: 46  MALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105

Query: 509 KVDKSS 514
           +    S
Sbjct: 106 EGYDRS 111

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 84.1 bits (209), Expect = 2e-18
 Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 19/138 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           ++AE+ R+ G   F +  +  A   Y ++++      P+D              + N AA
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPEDAR-----------GYSNRAA 181

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
            L KL    ++I  CNK ++ +P  V+   R+  A +A+ E+  A    +     D    
Sbjct: 182 ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD---- 237

Query: 516 PDATAALSKLKKQRRKLK 533
            +     S  +  +   K
Sbjct: 238 AEVNNGSSAREIDQLYYK 255

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 69.1 bits (170), Expect = 3e-13
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 18/109 (16%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
           + EK    GN+ +K  +F+ A   Y K       ++                   N AA 
Sbjct: 6   DKEKAE--GNKFYKARQFDEAIEHYNKAWE----LHKDIT------------YLNNRAAA 47

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             + GE   +I   N  ++              ++  +G       D +
Sbjct: 48  EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLK 96

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 62.2 bits (152), Expect = 5e-11
 Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 15/102 (14%)

Query: 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 463
           T + L K    E    K E        VNP+  EE                       + 
Sbjct: 111 TADILTKLRNAEKELKKAEAEAY----VNPEKAEE-----------ARLEGKEYFTKSDW 155

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             +++A  +++   P   +G   R  A   L  F EA  D  
Sbjct: 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.5 bits (145), Expect = 4e-10
 Identities = 9/101 (8%), Positives = 30/101 (29%), Gaps = 16/101 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
               +++G++E A +     +        +   +           +  ++    ++G   
Sbjct: 45  AAAEYEKGEYETAISTLNDAVE----QGREMRAD-----------YKVISKSFARIGNAY 89

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             +    K ++     +   +R       L   E+  +  E
Sbjct: 90  HKLGDLKKTIEYYQKSLT-EHRTADILTKLRNAEKELKKAE 129

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 22/130 (16%), Positives = 36/130 (27%), Gaps = 27/130 (20%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                + G         +K +        +   E           H   A  L KL    
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEY----YQKSLTE-----------H-RTADILTKLRNAE 122

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD-ATA--- 520
           K ++        NP   +     G  Y    ++  A + +  M+K      P+ A     
Sbjct: 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSN 178

Query: 521 ---ALSKLKK 527
              AL+KL  
Sbjct: 179 RAAALAKLMS 188

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 49.9 bits (120), Expect = 7e-07
 Identities = 12/94 (12%), Positives = 25/94 (26%), Gaps = 15/94 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
              L K   F  A A   K +      +P                ++  A   + + E  
Sbjct: 180 AAALAKLMSFPEAIADCNKAIE----KDPNFVR-----------AYIRKATAQIAVKEYA 224

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE 498
            ++E  +     +     G   R +  +     +
Sbjct: 225 SALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 86.3 bits (214), Expect = 4e-18
 Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 16/141 (11%)

Query: 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 454
           +  AE+++   N  FK   +E A   Y + +     +NP +            + + N +
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRS 47

Query: 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514
              L+      ++    + ++ +  ++KG YRR  + MALG+F  A RD+E ++KV K  
Sbjct: 48  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-KPH 106

Query: 515 EPDATAALSKLKKQRRKLKVR 535
           + DA     +  K  ++    
Sbjct: 107 DKDAKMKYQECNKIVKQKAFE 127

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 78.1 bits (193), Expect = 2e-17
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 7/119 (5%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           D+ GD  ++K  IR+G G+        D+ + V Y G L + ++   +D+       P  
Sbjct: 21  DISGDRGVLKDVIREGAGDLVAP----DASVLVKYSGYLEHMDRP--FDSNYF-RKTPRL 73

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
              GE +   G E+ +  M  GE+A     P+YAY     P  +P    + +EIELL F
Sbjct: 74  MKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDF 132

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 69.6 bits (171), Expect = 2e-14
 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 12/138 (8%)

Query: 9   NPQKKKAPSEDDKRRMKIV--PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLD-GVIV 65
           +    ++  E   +RM  +     ++K V+R G GD   +    V    +          
Sbjct: 4   DDAPGQSLYERLSQRMLDISGDRGVLKDVIREGAGD-LVAPDASVLVKYSGYLEHMDRPF 62

Query: 66  ESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAP 125
           +S       +  P    LG+   L G+  G+ +M +GE++ F  KP   YG   C    P
Sbjct: 63  DSNYF----RKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGC----P 114

Query: 126 STFPKDEELHFEIEMIDF 143
              P +  + FEIE++DF
Sbjct: 115 PLIPPNTTVLFEIELLDF 132

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 8/117 (6%)

Query: 144 AKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGD-GKLILSHRE-GEPYFFT 201
            +   I+ D GV+K VI EG G +       V    S       +   S+     P    
Sbjct: 17  QRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMK 75

Query: 202 FGKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
            G+     G+E+G+ +M R E A       Y       P  P++     V FE+EL+
Sbjct: 76  LGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCP--PLIPPNTTVLFEIELL 130

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 82.8 bits (205), Expect = 6e-17
 Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 15/125 (12%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  F    F  A   Y+  +     ++P +              + N++AC +  G+  
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIE----LDPNEPV-----------FYSNISACYISTGDLE 76

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           K IE   K L+  P H K L RR  A  +LG F +A  D  ++              L +
Sbjct: 77  KVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 136

Query: 525 LKKQR 529
              ++
Sbjct: 137 NLNKQ 141

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 16/101 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   F +     A+   ++ +     ++P  +             ++ +A  L      +
Sbjct: 250 GIFHFLKNNLLDAQVLLQESIN----LHPTPN------------SYIFLALTLADKENSQ 293

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +  +   K +D NP +    Y RG  Y  L +++ A+ DF+
Sbjct: 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 66.3 bits (162), Expect = 9e-12
 Identities = 21/147 (14%), Positives = 47/147 (31%), Gaps = 19/147 (12%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   F    ++ AK  ++K       +NP++              ++ +A  L K G+  
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQS----LNPENVY-----------PYIQLACLLYKQGKFT 361

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           +S    N+     P   +            G+F+ A + +++  +++             
Sbjct: 362 ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE----EVQEKIHVG 417

Query: 525 LKKQRRKLKVRLENSLKGCLTRSLGKF 551
           +     K  +    S +        KF
Sbjct: 418 IGPLIGKATILARQSSQDPTQLDEEKF 444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 18/141 (12%), Positives = 48/141 (34%), Gaps = 10/141 (7%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----EGKVFVGKRNL-LHLNVAACLLK 459
              L   G F+ A  +Y+   R    +    ++     G +      L    +     L 
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKR----LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLD 440

Query: 460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT 519
             +   +I+   K  + +P   +         + + + +EA   FE    + + +  +  
Sbjct: 441 EEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR-TMDEKL 499

Query: 520 AALSKLKKQRRKLKVRLENSL 540
            A +  +  + + ++R +  +
Sbjct: 500 QATTFAEAAKIQKRLRADPII 520

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
              L  +   +     ++K +     +NP+               + +       L + +
Sbjct: 283 ALTLADKENSQEFFKFFQKAVD----LNPEYPP-----------TYYHRGQMYFILQDYK 327

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            + E   K    NP +V    +        G+F E++  F 
Sbjct: 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN 368

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 8/94 (8%), Positives = 25/94 (26%), Gaps = 11/94 (11%)

Query: 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471
           G     +    ++      ++P   +          +   N            ++I+   
Sbjct: 1   GSHMNGEPDIAQLKG----LSPSQRQA-------YAVQLKNRGNHFFTAKNFNEAIKYYQ 49

Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             ++ +P            Y++ G+ E+      
Sbjct: 50  YAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 83

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 17/156 (10%), Positives = 38/156 (24%), Gaps = 27/156 (17%)

Query: 378 LGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE 437
                P + +  SF GI D   ++    + +     ++ A A     L+       +   
Sbjct: 157 GSQVLPSNTSLASFFGIFDSHLEV----SSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212

Query: 438 EGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 497
                + K                     + A              L   G+ +      
Sbjct: 213 VANDLLTK-------------STDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259

Query: 498 EEAQRDFEMMMKVDKSSEPDATA------ALSKLKK 527
            +AQ   +  + +     P   +       L+  + 
Sbjct: 260 LDAQVLLQESINLH----PTPNSYIFLALTLADKEN 291

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 77.2 bits (190), Expect = 1e-16
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 13/140 (9%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            D ++ K+ I++G G  P       S   +HY+    N + K  ++       QP+E   
Sbjct: 47  LDEKVSKQIIKEGHGSKPSK----YSTCFLHYRAWTKNSQHK--FEDTWHE-QQPIELVL 99

Query: 325 G-EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK--FLRPANVPEGAHIQWEIELLGFE 381
           G E     G  + V  M  GE ALV    + AY K       NVP  A + +E+E++GF+
Sbjct: 100 GKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFD 159

Query: 382 KPKDWTGLSFDGIMDEAEKI 401
           + K+         M   E+I
Sbjct: 160 ETKE---GKARSDMTVEERI 176

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 69.9 bits (171), Expect = 4e-14
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 9/141 (6%)

Query: 9   NPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIV-ES 67
            P ++           +++   + K +++ G G   PS       H    T +     E 
Sbjct: 29  EPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFED 87

Query: 68  TRSEYGGKGIPIRHVLGKSKILL-GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPS 126
           T      +  PI  VLGK K  L GL  G+ +M  GE ++  +  ++ YG++     +  
Sbjct: 88  TWH----EQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNF--SFP 141

Query: 127 TFPKDEELHFEIEMIDFAKAK 147
             P   +L +E+E+I F + K
Sbjct: 142 NVPPMADLLYEVEVIGFDETK 162

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 30/162 (18%), Positives = 65/162 (40%), Gaps = 9/162 (5%)

Query: 107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGW 166
            + + Q H  E +      +    +      +     ++A+++  D  V K++I EG G 
Sbjct: 5   LEHQTQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVL--DEKVSKQIIKEGHG- 61

Query: 167 ETPRAPYEVKAWISAKTGDGKLIL--SHREGEPYFFTFGKS-EVPKGLEMGIGTMTREEK 223
             P           A T + +     +  E +P     GK  +   GL +G+ +M   E+
Sbjct: 62  SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGER 121

Query: 224 AVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELVHLIQVRD 262
           A+++V  +       +   P V    ++ +EVE++   + ++
Sbjct: 122 ALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE 163

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 19/142 (13%), Positives = 52/142 (36%), Gaps = 16/142 (11%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D  E++   G   ++ GK++ A+  ++ +      ++  D               L + A
Sbjct: 16  DTLEQLYALGFNQYQAGKWDDAQKIFQALCM----LDHYDAR-----------YFLGLGA 60

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           C   LG   +++++ +     +    +  +     ++ LG+ + A+  F     +  +  
Sbjct: 61  CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ- 119

Query: 516 PDATAALSKLKKQRRKLKVRLE 537
           P   A  ++       +  R +
Sbjct: 120 PAHEALAARAGAMLEAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
            +   +   ++ LY  G      G++++AQ+ F+ +  +D
Sbjct: 9   MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD 48

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 8/131 (6%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            DG ++K   ++G+G      P   + + VHY G L N     F D+  D  G    F+ 
Sbjct: 12  KDGGVLKLIKKEGQGV---VKPTTGTTVKVHYVGTLEN--GTKF-DSSRDR-GDQFSFNL 64

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPK 384
           G G V +G+++ V  M  GE+A  T   DY Y     P  +P GA + +E+EL  +   +
Sbjct: 65  GRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW-SAE 123

Query: 385 DWTGLSFDGIM 395
           D +      I+
Sbjct: 124 DISPDRDGTIL 134

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 70.8 bits (174), Expect = 5e-15
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 8/131 (6%)

Query: 28  PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSK 87
            G ++K + + G G   P+ G  V  H      +G   +S+R     +G      LG+  
Sbjct: 13  DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRD----RGDQFSFNLGRGN 68

Query: 88  ILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147
           ++ G   G+ TM KGEV+ F ++    YG+      +P   P    L FE+E+ +++   
Sbjct: 69  VIKGWDLGVATMTKGEVAEFTIRSDYGYGDA----GSPPKIPGGATLIFEVELFEWSAED 124

Query: 148 IIADDFGVVKK 158
           I  D  G + +
Sbjct: 125 ISPDRDGTILR 135

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 9/126 (7%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKG 210
           D GV+K +  EGQG   P     VK        +G    S R+ G+ + F  G+  V KG
Sbjct: 13  DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKG 72

Query: 211 LEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLG-- 265
            ++G+ TMT+ E A   + S Y      SP  P + G   + FEVEL       D+    
Sbjct: 73  WDLGVATMTKGEVAEFTIRSDYGYGDAGSP--PKIPGGATLIFEVELFE-WSAEDISPDR 129

Query: 266 DGRLIK 271
           DG +++
Sbjct: 130 DGTILR 135

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 16/131 (12%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN+ F+  K++ A   Y   L     +                  + N++AC + +G+ +
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALE----LKEDPV------------FYSNLSACYVSVGDLK 56

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           K +E   K L+  P + K L RR  A   LG+F +A  D  ++      ++      L +
Sbjct: 57  KVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLER 116

Query: 525 LKKQRRKLKVR 535
              ++   K++
Sbjct: 117 NLNKQAMSKLK 127

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 70.2 bits (172), Expect = 6e-13
 Identities = 18/145 (12%), Positives = 48/145 (33%), Gaps = 23/145 (15%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
            + +    G   F +     A    +K +     + P+ +             ++ +A  
Sbjct: 238 ISLEHT--GIFKFLKNDPLGAHEDIKKAIE----LFPRVN------------SYIYMALI 279

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
           +    +  +     +K L  +  +    Y RG     L  +++A +DF+   ++D    P
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD----P 335

Query: 517 DATAALSKLKKQRRKLKVRLENSLK 541
           +      +L     +   + ++   
Sbjct: 336 ENIFPYIQLACLAYREN-KFDDCET 359

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 69.8 bits (171), Expect = 7e-13
 Identities = 15/140 (10%), Positives = 46/140 (32%), Gaps = 25/140 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----- 459
              L  +  F+ A  +Y+  +     +  + D            +++ +A  + K     
Sbjct: 379 AEILTDKNDFDKALKQYDLAIE----LENKLDG-----------IYVGIAPLVGKATLLT 423

Query: 460 ----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               +    ++     K    +P   +         +   + +EA   FE    + + + 
Sbjct: 424 RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR-TM 482

Query: 516 PDATAALSKLKKQRRKLKVR 535
            +   A++  +  + + ++R
Sbjct: 483 EEKLQAITFAEAAKVQQRIR 502

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 9/107 (8%), Positives = 36/107 (33%), Gaps = 15/107 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   F    ++ A   ++K       ++P++              ++ +A    +  +  
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKE----LDPENIFP-----------YIQLACLAYRENKFD 355

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
                 ++     P   +             +F++A + +++ ++++
Sbjct: 356 DCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 7/107 (6%), Positives = 31/107 (28%), Gaps = 15/107 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
              +            ++K L+    ++  +             ++ +       L    
Sbjct: 277 ALIMADRNDSTEYYNYFDKALK----LDSNNSS-----------VYYHRGQMNFILQNYD 321

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
           ++ +  +K  + +P ++    +         +F++ +  F    +  
Sbjct: 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 25/138 (18%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
               ++E KF+  +  + +  R      P+  E                A  L    +  
Sbjct: 345 ACLAYRENKFDDCETLFSEAKR----KFPEAPEV-----------PNFFAEILTDKNDFD 389

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAY---------MALGEFEEAQRDFEMMMKVDKSSE 515
           K+++  +  ++                           +  F EA    E   K+D  S 
Sbjct: 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS- 448

Query: 516 PDATAALSKLKKQRRKLK 533
             A   L+++K Q+  + 
Sbjct: 449 EQAKIGLAQMKLQQEDID 466

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 13/129 (10%), Positives = 30/129 (23%), Gaps = 13/129 (10%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
               F   K EL  A Y++       +        K              +         
Sbjct: 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPES---YDKADESFTKAARLFE 220

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA---- 520
           + ++  N+           L   G+      +   A  D +  +++     P   +    
Sbjct: 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF----PRVNSYIYM 276

Query: 521 --ALSKLKK 527
              ++    
Sbjct: 277 ALIMADRND 285

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             +      +  +   +I+  N  L+     V         Y+++G+ ++      
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMST 63

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 74.6 bits (184), Expect = 2e-16
 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            D  ++K   R G GE   + P+    + VHYKG L N   K F D+  D   +P  FS 
Sbjct: 17  KDRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSN--GKKF-DSSHD-RNEPFVFSL 69

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382
           G+G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+ 
Sbjct: 70  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG 127

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 71.1 bits (175), Expect = 4e-15
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)

Query: 12  KKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSE 71
                +E  +         ++K V R G G+ TP  GD+V  H   +  +G   +S+   
Sbjct: 2   APATVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD- 60

Query: 72  YGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKD 131
              +  P    LGK +++     G+ TM KGE+     KP+  YG       +    P +
Sbjct: 61  ---RNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSA----GSLPKIPSN 113

Query: 132 EELHFEIEMIDFAK 145
             L FEIE++DF  
Sbjct: 114 ATLFFEIELLDFKG 127

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 144 AKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTF 202
            +      D GV+K V   G G ETP    +V      K  +GK   S  +  EP+ F+ 
Sbjct: 10  GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSL 69

Query: 203 GKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
           GK +V K  ++G+ TM + E   +    +Y      S   P +     + FE+EL+
Sbjct: 70  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSL--PKIPSNATLFFEIELL 123

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 73.1 bits (180), Expect = 8e-16
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 4/123 (3%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           ++  DG +IK  ++ G      + P   + + VHY G L +  K   +D+  D    P +
Sbjct: 11  ELTADGGVIKTILKKGDEG-EENIPKKGNEVTVHYVGKLESTGKV--FDSSFD-RNVPFK 66

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           F   +G V +G+++CV  M   E  LV     Y Y       ++P  + + +EIELL F 
Sbjct: 67  FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFR 126

Query: 382 KPK 384
           + +
Sbjct: 127 ELE 129

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 24/123 (19%), Positives = 56/123 (45%), Gaps = 11/123 (8%)

Query: 28  PGSLMKAVMRPGGGDS--TPSDGDQVAYHCTVRTLD-GVIVESTRSEYGGKGIPIRHVLG 84
            G ++K +++ G       P  G++V  H   +    G + +S+      + +P +  L 
Sbjct: 15  DGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSF----DRNVPFKFHLE 70

Query: 85  KSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144
           + +++ G    + +M K E  + +++    YG++        + P +  L FEIE++ F 
Sbjct: 71  QGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDE----GCGESIPGNSVLLFEIELLSFR 126

Query: 145 KAK 147
           + +
Sbjct: 127 ELE 129

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 29/119 (24%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGD-------GKLIL-------SHREGEPYF 199
           GV+K ++ +G   E              K G+       GKL         S     P+ 
Sbjct: 17  GVIKTILKKGDEGEEN----------IPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFK 66

Query: 200 FTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
           F   + EV KG ++ + +M + EK ++ + S Y            + G   + FE+EL+
Sbjct: 67  FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCG--ESIPGNSVLLFEIELL 123

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 71.8 bits (177), Expect = 1e-15
 Identities = 37/113 (32%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           +    I  G G      P       VHY GML +   K F D+  D   +P +F  G+  
Sbjct: 2   VQVETISPGDGR---TFPKRGQTCVVHYTGMLED--GKKF-DSSRDR-NKPFKFMLGKQE 54

Query: 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           V  G+E  V  M  G+ A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 55  VIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 66.8 bits (164), Expect = 7e-14
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 31  LMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILL 90
           +    + PG G + P  G     H T    DG   +S+R     +  P + +LGK +++ 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIR 57

Query: 91  GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           G  EG+  M  G+ +   + P   YG        P   P    L F++E++  
Sbjct: 58  GWEEGVAQMSVGQRAKLTISPDYAYGAT----GHPGIIPPHATLVFDVELLKL 106

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
           GV  + I+ G G   P+         +    DGK   S R+  +P+ F  GK EV +G E
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 213 MGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
            G+  M+  ++A + ++  Y    T  P   ++     + F+VEL+
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHP--GIIPPHATLVFDVELL 104

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 72.9 bits (179), Expect = 1e-15
 Identities = 14/133 (10%), Positives = 44/133 (33%), Gaps = 17/133 (12%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D  + I       + +G+ E A+  +  +       +  + +             + +AA
Sbjct: 34  DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI----YDFYNVD-----------YIMGLAA 78

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
                 + +++ +               ++  G   + L    +A+  FE++++     +
Sbjct: 79  IYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

Query: 516 --PDATAALSKLK 526
               A + L  ++
Sbjct: 139 LKIKAQSYLDAIQ 151

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 72.8 bits (179), Expect = 2e-15
 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            D  ++K   R G GE   + P+    + VHYKG L N   K F D+  D   +P  FS 
Sbjct: 33  KDRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSN--GKKF-DSSHDR-NEPFVFSL 85

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382
           G+G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+ 
Sbjct: 86  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG 143

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 68.9 bits (169), Expect = 4e-14
 Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 9/146 (6%)

Query: 1   MAVEDEDINPQKKKAPSEDDKRRMKIV-PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRT 59
              E    N +   A   +    +       ++K V R G G+ TP  GD+V  H   + 
Sbjct: 6   TTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 65

Query: 60  LDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDD 119
            +G   +S+      +  P    LGK +++     G+ TM KGE+     KP+  YG   
Sbjct: 66  SNGKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAG 121

Query: 120 CPVAAPSTFPKDEELHFEIEMIDFAK 145
               +    P +  L FEIE++DF  
Sbjct: 122 ----SLPKIPSNATLFFEIELLDFKG 143

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 144 AKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTF 202
            +      D GV+K V   G G ETP    +V      K  +GK   S  +  EP+ F+ 
Sbjct: 26  GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSL 85

Query: 203 GKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
           GK +V K  ++G+ TM + E   +    +Y      S   P +     + FE+EL+
Sbjct: 86  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSL--PKIPSNATLFFEIELL 139

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 7/121 (5%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEK---KVFYDTRVDNDGQPLE 321
           G  +  K  ++ G      + P    ++   Y G L +       +   ++   + +PL 
Sbjct: 2   GPPKYTKSILKKGDKT---NFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLS 58

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV-PEGAHIQWEIELLGF 380
           F  G G V  G++  +  M  GE A +   P++AY K  +P    P    + +E+EL+  
Sbjct: 59  FKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118

Query: 381 E 381
           +
Sbjct: 119 D 119

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 68.1 bits (167), Expect = 4e-14
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 28  PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVES---TRSEYGGKGIPIRHVLG 84
           P    K++++ G   + P  GD V    T    DG + ++   T S+      P+   +G
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVG 62

Query: 85  KSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
             K++ G  E + TM KGE +  +++P+  YG+   P A     P + +L FE+E++D 
Sbjct: 63  VGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDA---KIPPNTKLIFEVELVDI 118

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 16/115 (13%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGK--------LILSHREGEPYFFTFGKS 205
              K ++ +G     P+    V  W +    DG              +  +P  F  G  
Sbjct: 5   KYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVG 64

Query: 206 EVPKGLEMGIGTMTREEKAVIYVTSQYL-----TPSPLMPVVEGCEEVHFEVELV 255
           +V +G +  + TM++ EKA + +  ++       P   +P      ++ FEVELV
Sbjct: 65  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIP---PNTKLIFEVELV 116

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 70.7 bits (174), Expect = 3e-15
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 294 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 353
           +HY G L +     F D+ +    QP  FS G G V +G++  +  M  GE   +  P +
Sbjct: 14  MHYTGKLED--GTEF-DSSLPQ-NQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSE 69

Query: 354 YAYDKFLRPANVPEGAHIQWEIELLGFEKPKD 385
             Y +   P  +P GA + +E+ELL  E+  +
Sbjct: 70  LGYGERGAPPKIPGGATLVFEVELLKIERRTE 101

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 52.9 bits (128), Expect = 4e-09
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 39  GGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT 98
           G        GD +  H T +  DG   +S+      +  P    LG  +++ G  +G+  
Sbjct: 1   GSPI-KSRKGDVLHMHYTGKLEDGTEFDSSLP----QNQPFVFSLGTGQVIKGWDQGLLG 55

Query: 99  MLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147
           M +GE     +  ++ YGE      AP   P    L FE+E++   +  
Sbjct: 56  MCEGEKRKLVIPSELGYGER----GAPPKIPGGATLVFEVELLKIERRT 100

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 191 SHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEE 247
           S  + +P+ F+ G  +V KG + G+  M   EK  + + S+       +P  P + G   
Sbjct: 29  SLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAP--PKIPGGAT 86

Query: 248 VHFEVELVHLIQVRDM 263
           + FEVEL+ + +  ++
Sbjct: 87  LVFEVELLKIERRTEL 102

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 7/114 (6%)

Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           +G +   RI  G G      P    L+ +HY G L N   + F D+ VD  G P + + G
Sbjct: 5   EGNVKIDRISPGDGA---TFPKTGDLVTIHYTGTLEN--GQKF-DSSVDR-GSPFQCNIG 57

Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 379
            G V +G+++ +  +  GE A +T P  YAY     P  +P  + + +++ELL 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLK 111

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 8/118 (6%)

Query: 25  KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLG 84
           +++ G++    + PG G + P  GD V  H T    +G   +S+      +G P +  +G
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVD----RGSPFQCNIG 57

Query: 85  KSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
             +++ G   GIP +  GE +   +     YG        P   P +  L F++E++ 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPR----GFPGLIPPNSTLVFDVELLK 111

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
            V    I+ G G   P+    V    +    +G+   S  + G P+    G  +V KG +
Sbjct: 7   NVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWD 66

Query: 213 MGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
           +GI  ++  EKA + +   Y       P   ++     + F+VEL+
Sbjct: 67  VGIPKLSVGEKARLTIPGPYAYGPRGFP--GLIPPNSTLVFDVELL 110

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 69.4 bits (170), Expect = 9e-14
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-C 463
                  G+ + A   YEK+L+    +   +              ++ +        E  
Sbjct: 95  AEMQVCRGQEKDALRMYEKILQ----LEADNLA-----------ANIFLGNYYYLTAEQE 139

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523
           +K +E   K L +        YR G++ +    +E+A+   + ++    S+E  A   L 
Sbjct: 140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE--AQKTLD 197

Query: 524 KLKKQRRKLK 533
           K+ +  +++ 
Sbjct: 198 KILRIEKEVN 207

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 67.8 bits (166), Expect = 4e-13
 Identities = 18/122 (14%), Positives = 43/122 (35%), Gaps = 5/122 (4%)

Query: 405 GNRLFKEGKFELAKAKYEKVLR-DFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 463
            +   + G+   A + + + +  + +                 + L   +A    K    
Sbjct: 11  VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY 70

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523
            K+     ++L   P +V  L       +  G+ ++A R +E +++++     D  AA  
Sbjct: 71  DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE----ADNLAANI 126

Query: 524 KL 525
            L
Sbjct: 127 FL 128

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 14/122 (11%), Positives = 33/122 (27%), Gaps = 20/122 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                K   ++ A   Y+++L+      P + +                A   +  G+ +
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQ----KAPNNVD-----------CLEACAEMQVCRGQEK 105

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE-EAQRDFEMMMKVDKSSEPDATAALS 523
            ++    K+L     ++      G  Y    E E +        +            A  
Sbjct: 106 DALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP----TKMQYARY 161

Query: 524 KL 525
           + 
Sbjct: 162 RD 163

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 9/92 (9%), Positives = 29/92 (31%), Gaps = 20/92 (21%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR----------------GMAYMA 493
            L   +  ++ G+  +++    + +  N    +  Y                   +AY  
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 494 LGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525
              +++A   ++ +++      P+    L   
Sbjct: 67  NRNYDKAYLFYKELLQKA----PNNVDCLEAC 94

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 7/114 (6%)

Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
             +L K+ +  G G      P     + VHY G   +   K F D+     G+P +F+ G
Sbjct: 23  SAQLEKKVLTPGDGV---TKPQAGKKVTVHYDGRFPD--GKQF-DSSRSR-GKPFQFTLG 75

Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 379
            G V +G++  V  M  GE AL T P   AY +   P  +P  A + +E+ELL 
Sbjct: 76  AGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 65.7 bits (161), Expect = 3e-13
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 8/134 (5%)

Query: 9   NPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVEST 68
           +        E   +    +   L K V+ PG G + P  G +V  H   R  DG   +S+
Sbjct: 4   HHHHHMGTLEAQTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSS 63

Query: 69  RSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTF 128
           RS    +G P +  LG  +++ G  +G+ TM  GE ++F +  Q+ YGE       P   
Sbjct: 64  RS----RGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGER----GYPPVI 115

Query: 129 PKDEELHFEIEMID 142
           P    L FE+E++ 
Sbjct: 116 PPKATLVFEVELLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 6/128 (4%)

Query: 132 EELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILS 191
              H  +  ++       +    + KKV+  G G   P+A  +V      +  DGK   S
Sbjct: 3   HHHHHHMGTLEAQTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDS 62

Query: 192 HRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEE 247
            R  G+P+ FT G  EV KG + G+ TMT  EKA+  +  Q        P  PV+     
Sbjct: 63  SRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYP--PVIPPKAT 120

Query: 248 VHFEVELV 255
           + FEVEL+
Sbjct: 121 LVFEVELL 128

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 66.5 bits (162), Expect = 2e-13
 Identities = 18/142 (12%), Positives = 50/142 (35%), Gaps = 16/142 (11%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D  E++       ++ G +E A   ++ +      ++  D               L + A
Sbjct: 19  DTLEQLYSLAFNQYQSGXYEDAHXVFQALCV----LDHYDSR-----------FFLGLGA 63

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           C   +G+   +I + +     +    +  +      +  GE  EA+    +  ++   + 
Sbjct: 64  CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA-NX 122

Query: 516 PDATAALSKLKKQRRKLKVRLE 537
           P+     +++      +K++ E
Sbjct: 123 PEFXELSTRVSSMLEAIKLKKE 144

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 65.0 bits (159), Expect = 5e-13
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 294 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 353
           VHY+G L  +    F+ T   N+GQP+ F+ G     +G++  ++ M  GE   +  PP 
Sbjct: 37  VHYEGYLEKDGSL-FHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPA 95

Query: 354 YAYDKFLRPANVPEGAHIQWEIELLGFEKP 383
             Y K      +P  + + + I+LL     
Sbjct: 96  LGYGK-EGKGKIPPESTLIFNIDLLEIRNG 124

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 37  RPGGGDSTPSDGDQVAYHCTVR-TLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEG 95
           +P         GD +  H       DG +  ST     G+  PI   LG  + L G  +G
Sbjct: 21  KPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQ--PIWFTLGILEALKGWDQG 78

Query: 96  IPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA 146
           +  M  GE     + P + YG+           P +  L F I++++    
Sbjct: 79  LKGMCVGEKRKLIIPPALGYGK-----EGKGKIPPESTLIFNIDLLEIRNG 124

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 63.8 bits (154), Expect = 3e-12
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 15/154 (9%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
            A        R    G+++ A A   + + + +H  P   EE     G     H  +A  
Sbjct: 10  GAYLALSDAQRQLVAGEYDEAAANCRRAM-EISHTMP--PEEAFDHAGFDAFCHAGLAEA 66

Query: 457 LLKLGECRKSIEACNKVL-----------DANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           L  L    +++ + +K L           D     +  +Y R +A   LG   EA  +F+
Sbjct: 67  LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 126

Query: 506 MMMKVDKSSEPDATAALSKLKKQRRKLKVRLENS 539
            ++++ +  +   T    ++ +       +L  S
Sbjct: 127 KVVEMIEERKG-ETPGKERMMEVAIDRIAQLGAS 159

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L K+G+  LA  +Y+  +      +    +           ++  + +     G   
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVD----RDTTRLD-----------MYGQIGSYFYNKGNFP 125

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I+   K +       K  Y  G AY    E+ +A   F 
Sbjct: 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV 166

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 18/104 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G+  + +G F LA    EK +R        D +           +   +        E  
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIR----PTTTDPK-----------VFYELGQAYYYNKEYV 159

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALG---EFEEAQRDFE 505
           K+  +  KVL+  P    G   R  A  A     +   A+  +E
Sbjct: 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 18/104 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            + LFK   +  A   + K+                        ++   A C  +L +  
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEA----KKYNSPY-----------IYNRRAVCYYELAKYD 54

Query: 465 KSIEACN---KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            + +        ++A  A        G   M  G+   A + ++
Sbjct: 55  LAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQ 98

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
               A  L K     ++IE  NK+            RR + Y  L +++ AQ+D E    
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65

Query: 510 VDKSSEPDATA------ALSKLKK 527
              +++  +         L K  +
Sbjct: 66  KVNATKAKSADFEYYGKILMKKGQ 89

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 30/132 (22%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   +   ++  A + + KVL     + P                +L  A          
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLE----LKPNIYI-----------GYLWRARANAAQDPDT 193

Query: 465 K---SIEACNKVL--------DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513
           K   +     K++              ++        Y    +  +A   ++ ++ +D  
Sbjct: 194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-- 251

Query: 514 SEPDATAALSKL 525
             P    A+  L
Sbjct: 252 --PTNKKAIDGL 261

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469
            + K  LAK  YEK++     V      + K    +    +  +A       +  K+  A
Sbjct: 191 PDTKQGLAKPYYEKLIE----VCAPGGAKYK---DELIEANEYIAYYYTINRDKVKADAA 243

Query: 470 CNKVLDANPAHVKGLYRRGMAY 491
              +L  +P + K +    M  
Sbjct: 244 WKNILALDPTNKKAIDGLKMKL 265

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
              L   G  E A   Y   L+     NP               +  ++   L  LG   
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQ----YNPDLYC-----------VRSDLGNLLKALGRLE 152

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++     K ++  P         G  + A GE   A   FE
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 65.3 bits (160), Expect = 2e-11
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            +R ++ G FE A+    ++ R      P +             + L +++   +     
Sbjct: 6   AHREYQAGDFEAAERHCMQLWR----QEPDNTG-----------VLLLLSSIHFQCRRLD 50

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +S       +  NP   +     G  Y   G+ +EA   + 
Sbjct: 51  RSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.1 bits (157), Expect = 3e-11
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            +  F+  + + +       ++     NP   E            + N+     + G+ +
Sbjct: 40  SSIHFQCRRLDRSAHFSTLAIK----QNPLLAE-----------AYSNLGNVYKERGQLQ 84

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++IE     L   P  + G      A +A G+ E A + + 
Sbjct: 85  EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.1 bits (157), Expect = 4e-11
 Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN L   G+ E AKA Y K +       P                  N+       GE  
Sbjct: 142 GNLLKALGRLEEAKACYLKAIE----TQPNFAV-----------AWSNLGCVFNAQGEIW 186

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I    K +  +P  +      G        F+ A   + 
Sbjct: 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.1 bits (157), Expect = 4e-11
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 19/121 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
               +++G  +LA   Y + +     + P   +            + N+A  L + G   
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIE----LQPHFPD-----------AYCNLANALKEKGSVA 288

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           ++ +  N  L   P H   L          G  EEA R +   ++V     P+  AA S 
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEFAAAHSN 344

Query: 525 L 525
           L
Sbjct: 345 L 345

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.3 bits (155), Expect = 5e-11
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G     +G+  LA   +EK +     ++P   +            ++N+   L +     
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVT----LDPNFLD-----------AYINLGNVLKEARIFD 220

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +++ A  + L  +P H          Y   G  + A   + 
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.9 bits (154), Expect = 9e-11
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN   + G+ + A   Y   LR    + P   +            ++N+AA L+  G+  
Sbjct: 74  GNVYKERGQLQEAIEHYRHALR----LKPDFID-----------GYINLAAALVAAGDME 118

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +++A    L  NP         G    ALG  EEA+  + 
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 19/129 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            N L ++G    A+  Y   LR    + P   +              N+A    + G   
Sbjct: 278 ANALKEKGSVAEAEDCYNTALR----LCPTHAD-----------SLNNLANIKREQGNIE 322

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           +++    K L+  P                G+ +EA   ++  +++     P    A S 
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS----PTFADAYSN 378

Query: 525 LKKQRRKLK 533
           +    ++++
Sbjct: 379 MGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.9 bits (146), Expect = 7e-10
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN L +   F+ A A Y + L     ++P               +H N+A    + G   
Sbjct: 210 GNVLKEARIFDRAVAAYLRALS----LSPNHAV-----------VHGNLACVYYEQGLID 254

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I+   + ++  P           A    G   EA+  + 
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 15/92 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            N   ++G  E A   Y K L     V P+               H N+A+ L + G+ +
Sbjct: 312 ANIKREQGNIEEAVRLYRKALE----VFPEFAA-----------AHSNLASVLQQQGKLQ 356

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGE 496
           +++    + +  +P         G     + +
Sbjct: 357 EALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.4 bits (124), Expect = 4e-07
 Identities = 5/55 (9%), Positives = 16/55 (29%)

Query: 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           + +A    + G+   +   C ++    P +   L      +      + +     
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST 57

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   F+ G+++ A+  +   L     +  +   +      K   L  N+     KL +  
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD------KWEPLLNNLGHVCRKLKKYA 253

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           ++++   + L   P +       G  +  +G FE A   F   + +      D T +++ 
Sbjct: 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR----RDDTFSVTM 309

Query: 525 LKK 527
           L  
Sbjct: 310 LGH 312

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 24/150 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLR-DFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 463
           G+    E + + A A Y    +       P                 L +          
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLP----------------MLYIGLEYGLTNNS 175

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE-----MMMKVDKSSEPDA 518
           + +    ++ L   P     ++  G+     GE++ A++ F      +    ++ +    
Sbjct: 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW 235

Query: 519 TAALSKLKKQRRKLKVRLENSLKGCLTRSL 548
              L+ L    RKLK +   +L     ++L
Sbjct: 236 EPLLNNLGHVCRKLK-KYAEALD-YHRQAL 263

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 12/96 (12%), Positives = 26/96 (27%), Gaps = 15/96 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G+   K  K+  A   + + L     + PQ+              +  +      +G   
Sbjct: 243 GHVCRKLKKYAEALDYHRQALV----LIPQNAS-----------TYSAIGYIHSLMGNFE 287

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 500
            +++  +  L         +   G          EA
Sbjct: 288 NAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 16/102 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
             R +    F++       V+      +P                       L++L +  
Sbjct: 29  AERHYYNCDFKMCYKLTSVVME----KDPFHAS-----------CLPVHIGTLVELNKAN 73

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGE-FEEAQRDFE 505
           +     +K++D  P++    +  G  Y+ +G   E A+R   
Sbjct: 74  ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLS 115

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 12/102 (11%), Positives = 22/102 (21%), Gaps = 16/102 (15%)

Query: 405 GNRLFKEGK-FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 463
           G      G   E A+    K       +                   +          E 
Sbjct: 97  GCYYLMVGHKNEHARRYLSKATT----LEKTYGP-----------AWIAYGHSFAVESEH 141

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +++ A              +   G+ Y      + A+R F 
Sbjct: 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 8/66 (12%), Positives = 25/66 (37%)

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
           + +++A       + +   +  + V++ +P H   L       + L +  E       ++
Sbjct: 24  VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83

Query: 509 KVDKSS 514
            +  S+
Sbjct: 84  DLYPSN 89

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           L    + +G G            + VHY G L +   + F D+  D    P  F  G G+
Sbjct: 30  LKYEDLTEGSGAEARA----GQTVSVHYTGWLTD--GQKF-DSSKDR-NDPFAFVLGGGM 81

Query: 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 379
           V +G++  V+ M  G +  +T PP   Y        +P  A + +E+ELL 
Sbjct: 82  VIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 50.3 bits (121), Expect = 9e-08
 Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 11/136 (8%)

Query: 9   NPQKKKAPSEDDKRRMKIV--PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVE 66
           +     +        M +V     L    +  G G      G  V+ H T    DG   +
Sbjct: 6   HHHHHSSGLVPRGSHMTVVTTESGLKYEDLTEGSGA-EARAGQTVSVHYTGWLTDGQKFD 64

Query: 67  STRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPS 126
           S++     +  P   VLG   ++ G  EG+  M  G V    + PQ+ YG       A  
Sbjct: 65  SSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGAR----GAGG 116

Query: 127 TFPKDEELHFEIEMID 142
             P +  L FE+E++D
Sbjct: 117 VIPPNATLVFEVELLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 7/116 (6%)

Query: 144 AKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTF 202
           +   ++  + G+  + + EG G    RA   V    +    DG+   S ++  +P+ F  
Sbjct: 19  SHMTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVL 77

Query: 203 GKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
           G   V KG + G+  M       + +  Q       +    V+     + FEVEL+
Sbjct: 78  GGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG--GVIPPNATLVFEVELL 131

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 61.7 bits (151), Expect = 3e-11
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 19/123 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    +  K++LA     KV       NP +             +   +   L  LG   
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAE----ANPINFN-----------VRFRLGVALDNLGRFD 127

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           ++I++    L   P   K       +Y  +G  EEA   F+   ++D      A+  L+ 
Sbjct: 128 EAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD----EGASVELAL 183

Query: 525 LKK 527
           + +
Sbjct: 184 VPR 186

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 60.2 bits (147), Expect = 9e-11
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    K G++  A    E+V       +  D +           + L++    +K G   
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYD----ADAFDVD-----------VALHLGIAYVKTGAVD 59

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +  E   + L   P +VK     G+ Y+ + +++ A     
Sbjct: 60  RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLI 100

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 57.1 bits (139), Expect = 9e-10
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    K G  +      E+ L       P + +           +   +    +++ +  
Sbjct: 49  GIAYVKTGAVDRGTELLERSLA----DAPDNVK-----------VATVLGLTYVQVQKYD 93

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            ++    KV +ANP +    +R G+A   LG F+EA   F+
Sbjct: 94  LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 46.3 bits (111), Expect = 5e-06
 Identities = 11/56 (19%), Positives = 21/56 (37%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           + +      K G   +++    +V DA+   V      G+AY+  G  +      E
Sbjct: 11  YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLE 66

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 62.1 bits (151), Expect = 3e-11
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           L    + +G G            + VHY G L +   + F D+  D    P  F  G G+
Sbjct: 106 LKYEDLTEGSGAEARA----GQTVSVHYTGWLTD--GQKF-DSSKDR-NDPFAFVLGGGM 157

Query: 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 379
           V +G++  V+ M  G +  +T PP   Y        +P  A + +E+ELL 
Sbjct: 158 VIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 52.1 bits (125), Expect = 7e-08
 Identities = 35/143 (24%), Positives = 53/143 (37%), Gaps = 11/143 (7%)

Query: 2   AVEDEDINPQKKKAPSEDDKRRMKIV--PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRT 59
             ED D+          +      +V     L    +  G G      G  V+ H T   
Sbjct: 75  TPEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSGA-EARAGQTVSVHYTGWL 133

Query: 60  LDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDD 119
            DG   +S++     +  P   VLG   ++ G  EG+  M  G V    + PQ+ YG   
Sbjct: 134 TDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGAR- 188

Query: 120 CPVAAPSTFPKDEELHFEIEMID 142
               A    P +  L FE+E++D
Sbjct: 189 ---GAAGVIPPNATLVFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 5/151 (3%)

Query: 83  LGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
           + K+  L  L+E        E+   +       G        P     ++    E     
Sbjct: 37  IKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIRIQADQTPEDLDMEDNDIIEAHREQ 93

Query: 143 FAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFT 201
              + ++  + G+  + + EG G    RA   V    +    DG+   S ++  +P+ F 
Sbjct: 94  IGGSTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFV 152

Query: 202 FGKSEVPKGLEMGIGTMTREEKAVIYVTSQY 232
            G   V KG + G+  M       + +  Q 
Sbjct: 153 LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQL 183

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G      G   LA+  + + L     + P   E           +   +   L + G   
Sbjct: 50  GVLYDSLGLRALARNDFSQALA----IRPDMPE-----------VFNYLGIYLTQAGNFD 94

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            + EA + VL+ +P +      RG+A    G  + AQ D  
Sbjct: 95  AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 11/101 (10%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
              L    + E+  A+ E++L      + +  +           L          LG   
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQ-----------LLYERGVLYDSLGLRA 60

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +    ++ L   P   +     G+     G F+ A   F+
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 17/128 (13%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L + G F+ A   ++ VL     ++P  +             HLN    L   G  +
Sbjct: 84  GIYLTQAGNFDAAYEAFDSVLE----LDPTYNY-----------AHLNRGIALYYGGRDK 128

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA--AL 522
            + +        +P          +A   L E +  +   +   K DK           L
Sbjct: 129 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 188

Query: 523 SKLKKQRR 530
             + +Q  
Sbjct: 189 GNISEQTL 196

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 10/99 (10%), Positives = 26/99 (26%), Gaps = 15/99 (15%)

Query: 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 466
            + ++   E  KA           +     E            +  +    L LG+   +
Sbjct: 190 NISEQTLMERLKADATDNTS----LAEHLSE-----------TNFYLGKYYLSLGDLDSA 234

Query: 467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                  +  N  +        +    LG+ ++   + +
Sbjct: 235 TALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 61.8 bits (151), Expect = 6e-11
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
             R  + G +E A   + K +      N +D              ++N A  L  + E  
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIE----ENKEDAI-----------PYINFANLLSSVNELE 74

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +++   +K L+ + +     Y  G  Y+    ++EA+  FE
Sbjct: 75  RALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFE 115

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 61.8 bits (151), Expect = 6e-11
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN    +  ++ AK  +EK LR       ++ +           L   +   L+KL + +
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALR----AGMENGD-----------LFYMLGTVLVKLEQPK 142

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            ++    + ++ N    +  ++ GM     G  +EA   F 
Sbjct: 143 LALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            N L    + E A A Y+K L     ++                 +       +     +
Sbjct: 64  ANLLSSVNELERALAFYDKALE----LDSSAAT-----------AYYGAGNVYVVKEMYK 108

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++ +   K L A   +    Y  G   + L + + A    +
Sbjct: 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L K  + +LA    ++ +     +N  D E                  CL   G   
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVE----LNENDTE-----------ARFQFGMCLANEGMLD 176

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +++     V + +P H    Y  G+ Y      E+A    +
Sbjct: 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD 217

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 15/92 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L  EG  + A +++  V       +P   +              N            
Sbjct: 166 GMCLANEGMLDEALSQFAAVTE----QDPGHAD-----------AFYNAGVTYAYKENRE 210

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGE 496
           K++E  +K +D  P H+  L+ + +       
Sbjct: 211 KALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 50.2 bits (121), Expect = 5e-07
 Identities = 10/89 (11%), Positives = 24/89 (26%), Gaps = 11/89 (12%)

Query: 417 AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476
           +   +           P+            ++          + G+  K+ EA  K ++ 
Sbjct: 4   SHHHHHHSSGLV----PRGSHM-------ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE 52

Query: 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           N               ++ E E A   ++
Sbjct: 53  NKEDAIPYINFANLLSSVNELERALAFYD 81

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 15/147 (10%), Positives = 36/147 (24%), Gaps = 20/147 (13%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  + K      A   +E V +      P+ +E              ++     +  +  
Sbjct: 28  GLSMLKLANLAEAALAFEAVCQ----AAPEREE-----------AWRSLGLTQAENEKDG 72

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
            +I A N     +P  +       +++        A       +       P      S 
Sbjct: 73  LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ----PQYEQLGSV 128

Query: 525 LKKQRRKLKVRLENSLKGCLTRSLGKF 551
             +    +      S       +  ++
Sbjct: 129 NLQADVDIDDLNVQSE-DFFFAAPNEY 154

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G        ++ A A   + +     + P D +           L   + A L      +
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVE----LRPDDAQ-----------LWNKLGATLANGNRPQ 223

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++++A N+ LD NP +V+ +Y   ++Y  + +++ A +   
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 8/105 (7%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----EGKVFVGKRNLLHLNVAACLLKL 460
                 E     A A     L       PQ ++      +  V   +L   +        
Sbjct: 96  AVSHTNEHNANAALASLRAWLL----SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP 151

Query: 461 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            E R+     +  L+ NP   +     G+ Y     ++ A  +  
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLR 196

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 10/96 (10%), Positives = 24/96 (25%), Gaps = 15/96 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                   ++   +      L     +NP D +           LH ++           
Sbjct: 145 DFFFAAPNEYRECRTLLHAALE----MNPNDAQ-----------LHASLGVLYNLSNNYD 189

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 500
            +     + ++  P   +   + G         +EA
Sbjct: 190 SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEA 225

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 15/94 (15%), Positives = 22/94 (23%), Gaps = 15/94 (15%)

Query: 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471
           G        Y      F   NP    E            +     +LKL    ++  A  
Sbjct: 1   GHMLQNNTDYP-----FEANNPYMYHEN----------PMEEGLSMLKLANLAEAALAFE 45

Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            V  A P   +     G+      +   A     
Sbjct: 46  AVCQAAPEREEAWRSLGLTQAENEKDGLAIIALN 79

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 10/114 (8%), Positives = 26/114 (22%), Gaps = 27/114 (23%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L    + + A   Y + L     +NP               +  N+A     + +  
Sbjct: 213 GATLANGNRPQEALDAYNRALD----INPGYVR-----------VMYNMAVSYSNMSQYD 257

Query: 465 KSIEACNKVLDANPAHVKGLYRR------------GMAYMALGEFEEAQRDFEM 506
            + +   + +                          M    +   +  +  +  
Sbjct: 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 63.7 bits (155), Expect = 8e-11
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            + LF   +F    A   K+L     ++P + +           ++    A L + GE  
Sbjct: 312 ADTLFVRSRFIDVLAITTKILE----IDPYNLD-----------VYPLHLASLHESGEKN 356

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           K     N ++D +P         G+ Y+ + +  EA+R F 
Sbjct: 357 KLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFS 397

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 12/123 (9%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   F +   + A   ++  L         +                N+     KL    
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEK--------PWAATWANLGHAYRKLKMYD 533

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
            +I+A N+ L  +           + Y+       A       + +     P+   A   
Sbjct: 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS----PNEIMASDL 589

Query: 525 LKK 527
           LK+
Sbjct: 590 LKR 592

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 61.0 bits (148), Expect = 6e-10
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 20/147 (13%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            +    EG+ + A + Y    R    +                  +L +    ++LG   
Sbjct: 414 AHSFAIEGEHDQAISAYTTAAR----LFQGTHL-----------PYLFLGMQHMQLGNIL 458

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE---MMMKVDKSSEPDATAA 521
            + E               L   G+      + + A   F+   +++K  +S+E    A 
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518

Query: 522 LSKLKKQRRKLKVRLENSLKGCLTRSL 548
            + L    RKLK   + ++   L + L
Sbjct: 519 WANLGHAYRKLK-MYDAAID-ALNQGL 543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G       K   A+  + K       ++PQ                +  A      GE  
Sbjct: 380 GIYYLCVNKISEARRYFSKSST----MDPQFGP-----------AWIGFAHSFAIEGEHD 424

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++I A                  GM +M LG    A    +
Sbjct: 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 15/121 (12%), Positives = 32/121 (26%), Gaps = 12/121 (9%)

Query: 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNV 453
             ++A  +R        +   E    + E  L   N    +  +           L L  
Sbjct: 264 SKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING-LEKSSD-----------LLLCK 311

Query: 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513
           A  L         +    K+L+ +P ++        +    GE  +       ++     
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371

Query: 514 S 514
            
Sbjct: 372 K 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 15/87 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G+   K   ++ A     + L     ++  D             +H  +A   L      
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLL----LSTNDAN-----------VHTAIALVYLHKKIPG 567

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAY 491
            +I   ++ L  +P  +        A 
Sbjct: 568 LAITHLHESLAISPNEIMASDLLKRAL 594

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 18/101 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G     +  ++ A       L  F+ V                 +  N+      L    
Sbjct: 13  GVLAADKKDWKGA-------LDAFSAVQDPHSR-----------ICFNIGCMYTILKNMT 54

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++ +A  + ++ +       ++RGM Y    +++ A +D +
Sbjct: 55  EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 95

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 12/141 (8%), Positives = 33/141 (23%), Gaps = 32/141 (22%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G           A+  + + +      +                 +        +  +  
Sbjct: 44  GCMYTILKNMTEAEKAFTRSIN----RDKHLAV-----------AYFQRGMLYYQTEKYD 88

Query: 465 KSIEACNKVLDANPA----------------HVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
            +I+   + L                       + LY     Y    E+++A+    +  
Sbjct: 89  LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148

Query: 509 KVD-KSSEPDATAALSKLKKQ 528
            +  +        A+  + KQ
Sbjct: 149 SMKSEPRHSKIDKAMECVWKQ 169

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 15/121 (12%), Positives = 32/121 (26%), Gaps = 19/121 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            +     G     +   ++ L     ++P   E               +           
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLA----LHPGHPE-----------AVARLGRVRWTQQRHA 74

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           ++     +  DA P H       G A    G+ E A   +    ++     P+     ++
Sbjct: 75  EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL----PEEPYITAQ 130

Query: 525 L 525
           L
Sbjct: 131 L 131

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 19/114 (16%)

Query: 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471
                   +    +R      PQD               L +A   L +G+      A  
Sbjct: 3   ADGPRELLQLRAAVR----HRPQDFV-----------AWLMLADAELGMGDTTAGEMAVQ 47

Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525
           + L  +P H + + R G          EA    +          P+       L
Sbjct: 48  RGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA----PEHPGIALWL 97

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 15/119 (12%), Positives = 40/119 (33%), Gaps = 17/119 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L+++ ++E A  +  +  +D   + P+              +  N+    L++ +  
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDT--LYPERSR-----------VFENLGLVSLQMKKPA 158

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523
           ++ E   K L  N                  E+  A++ +++  +           +L 
Sbjct: 159 QAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG----GQNARSLL 213

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    + G  E AK    K L     ++P   +            H  +A       E +
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALE----IDPSSAD-----------AHAALAVVFQTEMEPK 88

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            + E   K L ++  + + L   G        +EEA +   
Sbjct: 89  LADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 10/101 (9%), Positives = 29/101 (28%), Gaps = 16/101 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            + L   G     +    K  +       +  +            ++ +    L+ G   
Sbjct: 11  SSGLVPRGSHMGDQN-PLKTDKG----RDEARD-----------AYIQLGLGYLQRGNTE 54

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++     K L+ +P+         + +    E + A  ++ 
Sbjct: 55  QAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYR 95

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 19/117 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    +  K   AK  +EK LR    +N                + L +A  L K  E  
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLR----LNRNQPS-----------VALEMADLLYKEREYV 192

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA 521
            + +  +        + + L           + + A      + ++     P +   
Sbjct: 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY----PGSLEY 245

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 56.3 bits (137), Expect = 4e-10
 Identities = 13/103 (12%), Positives = 34/103 (33%), Gaps = 17/103 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   +  G +  +   +EK ++    ++P++ +             L     L  L    
Sbjct: 13  GVLQYDAGNYTESIDLFEKAIQ----LDPEESK-----------YWLMKGKALYNLERYE 57

Query: 465 KSIEACNKVLD--ANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++++  N V++   +  +      +  A   +   E      E
Sbjct: 58  EAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAE 100

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 50.1 bits (121), Expect = 6e-08
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 7/84 (8%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
           +          G   +SI+   K +  +P   K    +G A   L  +EEA   +  ++ 
Sbjct: 9   YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68

Query: 510 VDKSSEPDATA------ALSKLKK 527
           V +    +         AL  ++ 
Sbjct: 69  VIEDEY-NKDVWAAKADALRYIEG 91

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G +  KEG   +     E  +      +P D E               +     +    +
Sbjct: 72  GLKRLKEGDLPVTILFMEAAIL----QDPGDAE-----------AWQFLGITQAENENEQ 116

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I A  + L+  P ++K L    ++Y      ++A    +
Sbjct: 117 AAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK 157

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G      G+F  A   +   L     V P+D             L   + A L       
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALT----VRPEDYS-----------LWNRLGATLANGDRSE 264

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +++EA  + L+  P  ++  Y  G++ + LG + EA  +F 
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFL 305

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 11/109 (10%), Positives = 32/109 (29%), Gaps = 15/109 (13%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    +    + A    ++ L     + P + +             + +A         +
Sbjct: 106 GITQAENENEQAAIVALQRCLE----LQPNNLK-----------ALMALAVSYTNTSHQQ 150

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513
            + EA    +  NP +   +  +  +        ++  D  ++  V + 
Sbjct: 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 11/108 (10%)

Query: 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 457
            E  R       +E + ++  +  EK    F+  NP  D  G                  
Sbjct: 27  EEMARRNWISENQEAQNQVTVSASEKGYY-FHTENPFKDWPG----------AFEEGLKR 75

Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           LK G+   +I      +  +P   +     G+        + A    +
Sbjct: 76  LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQ 123

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 17/102 (16%), Positives = 25/102 (24%), Gaps = 15/102 (14%)

Query: 405 GNRLFKEGKFELAKA---KYEKVLRDFN---HVNPQDDEEGKVFVGKRNLLHLNVAACLL 458
                   +   +       E V   +    H N    +           L   +     
Sbjct: 174 KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD---------LQTGLGVLFH 224

Query: 459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 500
             GE  ++I+A N  L   P       R G         EEA
Sbjct: 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA 266

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 13/113 (11%), Positives = 27/113 (23%), Gaps = 27/113 (23%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                     + A    +  ++     NP+              L  N            
Sbjct: 140 AVSYTNTSHQQDACEALKNWIK----QNPKYKY-----------LVKNKKGSPGLTRRMS 184

Query: 465 KSIEACNKVLDANPAHVKGLYR------------RGMAYMALGEFEEAQRDFE 505
           KS    + +      +++  ++             G+ +   GEF  A   F 
Sbjct: 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 237

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G R  +EG    A   +E  ++     +P+  E               +     +  +  
Sbjct: 71  GLRRLQEGDLPNAVLLFEAAVQ----QDPKHME-----------AWQYLGTTQAENEQEL 115

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I A  + L+  P +   L    +++       +A     
Sbjct: 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 156

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 24/147 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G      G+++ A   +   L     V P D             L   + A L    +  
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALS----VRPNDYL-----------LWNKLGATLANGNQSE 268

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           +++ A  + L+  P +++  Y  G++ + LG   EA   F   + +       +     +
Sbjct: 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ----RKSRGPRGE 324

Query: 525 LKKQRRKLKVRLENSLKGCLTRSLGKF 551
                  +   L  +L       LG+ 
Sbjct: 325 GGAMSENIWSTLRLALS-----MLGQS 346

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 10/107 (9%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----EGKVFVGKRNLLHLNVAACLLKL 460
                 E     A       LR      P          +   G        +   LL  
Sbjct: 139 AVSFTNESLQRQACEILRDWLR----YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194

Query: 461 GECRKSIEACNKVLDANPAHV--KGLYRRGMAYMALGEFEEAQRDFE 505
               +  E     +  +P  +        G+ +   GE+++A   F 
Sbjct: 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 241

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 11/97 (11%)

Query: 409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE 468
           +     +L  A Y+K  + F   NP  D                     L+ G+   ++ 
Sbjct: 37  WLSDYDDLTSATYDKGYQ-FEEENPLRDHPQ----------PFEEGLRRLQEGDLPNAVL 85

Query: 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                +  +P H++     G       +   A     
Sbjct: 86  LFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 13/96 (13%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
              L  +  F   K  +   +R    ++P   +           +   +       GE  
Sbjct: 188 LGSLLSDSLFLEVKELFLAAVR----LDPTSIDPD---------VQCGLGVLFNLSGEYD 234

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 500
           K+++     L   P       + G       + EEA
Sbjct: 235 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 26/108 (24%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L    + E A A Y + L     + P                  N+    + LG  R
Sbjct: 258 GATLANGNQSEEAVAAYRRALE----LQPGYIR-----------SRYNLGISCINLGAHR 302

Query: 465 KSIEACNKVLDANPAHVKGLYRR-----------GMAYMALGEFEEAQ 501
           +++E   + L+                        +A   LG+ +   
Sbjct: 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 15/116 (12%), Positives = 30/116 (25%), Gaps = 30/116 (25%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    +  +  LA +   + L     + P +               + +A         R
Sbjct: 105 GTTQAENEQELLAISALRRCLE----LKPDNQT-----------ALMALAVSFTNESLQR 149

Query: 465 KSIEACNKVLDANPAHVK---------------GLYRRGMAYMALGEFEEAQRDFE 505
           ++ E     L   PA+                    R   + ++   F E +  F 
Sbjct: 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFL 205

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 13/130 (10%), Positives = 28/130 (21%), Gaps = 18/130 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           ++   I   G         +       +       + P+                 +   
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTPEQVVA-----------IASHDG 420

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +   G    AL          +       +  
Sbjct: 421 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPD---PALAALT 477

Query: 516 PDATAALSKL 525
            D   AL+ L
Sbjct: 478 NDHLVALACL 487

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 8/116 (6%), Positives = 20/116 (17%), Gaps = 15/116 (12%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +       + P+                 +   
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHG----LTPEQVV-----------AIASHDG 148

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
               L   +  +    +     P  V  +   G    AL   +           + 
Sbjct: 149 GKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 14/154 (9%), Positives = 36/154 (23%), Gaps = 21/154 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +       + PQ                 +   
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHG----LTPQQVVA-----------IASNGG 318

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +        AL   +           +     
Sbjct: 319 GKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT---- 374

Query: 516 PDATAALSKLKKQRRKLKVRLENSLKGCLTRSLG 549
           P+   A++     ++ L+  ++  L   L ++ G
Sbjct: 375 PEQVVAIASNGGGKQALE-TVQRLLP-VLCQAHG 406

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 7/110 (6%), Positives = 19/110 (17%), Gaps = 15/110 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +       + P+                 +   
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHG----LTPEQVV-----------AIASNGG 386

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
               L   ++ +    +     P  V  +        AL   +       
Sbjct: 387 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLC 436

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.1 bits (138), Expect = 9e-09
 Identities = 14/145 (9%), Positives = 34/145 (23%), Gaps = 21/145 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G         +       +       + PQ                 +       L   +
Sbjct: 215 GGGKQALETVQRLLPVLCQAHG----LTPQQVV-----------AIASNGGGKQALETVQ 259

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           + +    +     P  V  +        AL   +           +     P    A++ 
Sbjct: 260 RLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT----PQQVVAIAS 315

Query: 525 LKKQRRKLKVRLENSLKGCLTRSLG 549
               ++ L+  ++  L   L ++ G
Sbjct: 316 NGGGKQALE-TVQRLLP-VLCQAHG 338

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.1 bits (138), Expect = 9e-09
 Identities = 16/154 (10%), Positives = 38/154 (24%), Gaps = 21/154 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           ++   I   G         +       +       + PQ                 +   
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTPQQVV-----------AIASNGG 216

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +   G    AL   +           +     
Sbjct: 217 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---- 272

Query: 516 PDATAALSKLKKQRRKLKVRLENSLKGCLTRSLG 549
           P    A++     ++ L+  ++  L   L ++ G
Sbjct: 273 PQQVVAIASNSGGKQALE-TVQRLLP-VLCQAHG 304

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 8/96 (8%), Positives = 19/96 (19%), Gaps = 12/96 (12%)

Query: 411 EGKFELAKAKYEKVLRDF-NHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469
                 A   +   L     ++ P+                 +       L   ++ +  
Sbjct: 46  GVTAVEAVHAWRNALTGAPLNLTPEQVVA-----------IASHDGGKQALETVQRLLPV 94

Query: 470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             +     P  V  +        AL   +       
Sbjct: 95  LCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 130

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 56.2 bits (137), Expect = 7e-10
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  +K+G ++ A   Y+K L     ++P+  E              N+     K G+  
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALE----LDPRSAE-----------AWYNLGNAYYKQGDYD 52

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++IE   K L+ +P   +  Y  G AY   G+++EA   ++
Sbjct: 53  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 52.0 bits (126), Expect = 2e-08
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  +K+G ++ A   Y+K L     ++P+  E              N+     K G+  
Sbjct: 42  GNAYYKQGDYDEAIEYYQKALE----LDPRSAE-----------AWYNLGNAYYKQGDYD 86

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++IE   K L+ +P   +  Y  G AY   G+++EA   ++
Sbjct: 87  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 42.4 bits (101), Expect = 5e-05
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             N+     K G+  ++IE   K L+ +P   +  Y  G AY   G+++EA   ++
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 59

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           L+ +RI  G G+     P  D    VHY G L +    VF D+  +  G+P  F   E  
Sbjct: 39  LVFQRIARGSGK---RAPAIDDKCEVHYTGRLRD--GTVF-DSSRER-GKPTTFRPNE-- 89

Query: 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDW 386
           V +G+   ++LM  G+   +  P D AY        +P  + +++++EL+  +     
Sbjct: 90  VIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGGKG 147

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 10/117 (8%)

Query: 31  LMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILL 90
           L+   +  G G   P+  D+   H T R  DG + +S+R     +G P        +++ 
Sbjct: 39  LVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE----RGKPTTFRPN--EVIK 92

Query: 91  GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147
           G  E +  M +G+     +   + YG            P    L F++E+I      
Sbjct: 93  GWTEALQLMREGDRWRLFIPYDLAYGVTG----GGGMIPPYSPLEFDVELISIKDGG 145

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 55.2 bits (133), Expect = 1e-09
 Identities = 12/101 (11%), Positives = 27/101 (26%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  + K      A   +E V +      P+ +E              ++     +  +  
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQ----KEPEREE-----------AWRSLGLTQAENEKDG 68

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I A N     +P  +       +++        A     
Sbjct: 69  LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 109

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 16/98 (16%), Positives = 25/98 (25%), Gaps = 14/98 (14%)

Query: 428 FNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 487
           F   NP    E            +     +LKL    ++  A   V    P   +     
Sbjct: 8   FEANNPYMYHEN----------PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL 57

Query: 488 GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525
           G+      +   A         +D    P   A  + L
Sbjct: 58  GLTQAENEKDGLAIIALNHARMLD----PKDIAVHAAL 91

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 24/129 (18%), Positives = 36/129 (27%), Gaps = 17/129 (13%)

Query: 405 GNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 463
           G  L     +   + A ++K L D     P                +LN   C  K G+ 
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALAD--PTYPTPYI-----------ANLNKGICSAKQGQF 129

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523
             +     + L A P             M  G+  +A   F+   K     E      L 
Sbjct: 130 GLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK---KYQSRVEVLQADDLL 186

Query: 524 KLKKQRRKL 532
              K  + L
Sbjct: 187 LGWKIAKAL 195

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 16/102 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                +   +  A A  E  L+     +P+++              L  A     L    
Sbjct: 15  AMEYMRGQDYRQATASIEDALK----SDPKNEL-----------AWLVRAEIYQYLKVND 59

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMA-LGEFEEAQRDFE 505
           K+ E+  + L   P   +     G      L    E+   F+
Sbjct: 60  KAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFD 101

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 10/57 (17%), Positives = 23/57 (40%)

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +   +A   ++  + R++  +    L ++P +      R   Y  L   ++AQ  F 
Sbjct: 10  IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 19/122 (15%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           L       G G   +       L+  HY G L N   KVF D+  +  G+PL F  G G 
Sbjct: 14  LAFCDKVVGYGPEAV----KGQLIKAHYVGKLEN--GKVF-DSSYNR-GKPLTFRIGVGE 65

Query: 329 VPEGFEMCV------RLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQWEIEL 377
           V +G++  +        ML G    +  PP+ AY             +P  + + ++IE 
Sbjct: 66  VIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEY 125

Query: 378 LG 379
           +G
Sbjct: 126 IG 127

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 18  EDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGI 77
           E       + P  L       G G      G  +  H   +  +G + +S+ +    +G 
Sbjct: 1   ETTSCEFSVSPSGLAFCDKVVGYGP-EAVKGQLIKAHYVGKLENGKVFDSSYN----RGK 55

Query: 78  PIRHVLGKSKILLGLLEGI------PTMLKGEVSMFKMKPQMHYGEDDC-PVAAPSTFPK 130
           P+   +G  +++ G  +GI      P ML G     ++ P++ YG+            P 
Sbjct: 56  PLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPP 115

Query: 131 DEELHFEIEMIDFA 144
              L F+IE I  A
Sbjct: 116 ASVLLFDIEYIGKA 129

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 14/115 (12%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
           G+       G G         +KA    K  +GK+  S    G+P  F  G  EV KG +
Sbjct: 13  GLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWD 71

Query: 213 MGI------GTMTREEKAVIYVTSQY------LTPSPLMPVVEGCEEVHFEVELV 255
            GI        M    K  + +  +               ++     + F++E +
Sbjct: 72  QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 57.8 bits (139), Expect = 2e-09
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 21/139 (15%)

Query: 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR--K 465
           L K  + +LA+ + +K+       +               L  L  A   L  G  +   
Sbjct: 140 LLKLDRLDLARKELKKMQD----QDEDAT-----------LTQLATAWVSLAAGGEKLQD 184

Query: 466 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525
           +     ++ D     +  L  +   +MA G +E A+   +  +  D S  P+    L  L
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVL 243

Query: 526 KKQRRKLK---VRLENSLK 541
            +   K      R  + LK
Sbjct: 244 SQHLGKPPEVTNRYLSQLK 262

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 10/110 (9%)

Query: 274 IRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGF 333
           I  G G  P         + V Y G L++    VF D+     G+P  F   +  V  G+
Sbjct: 113 INSGNGVKPGK----SDTVTVEYTGRLID--GTVF-DSTEKT-GKPATFQVSQ--VIPGW 162

Query: 334 EMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKP 383
              ++LM  G    +  P   AY        +     + ++I L+  +K 
Sbjct: 163 TEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKKS 212

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 11/112 (9%)

Query: 35  VMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLE 94
           V+  G G   P   D V    T R +DG + +ST       G P    + +  ++ G  E
Sbjct: 112 VINSGNGVK-PGKSDTVTVEYTGRLIDGTVFDSTEK----TGKPATFQVSQ--VIPGWTE 164

Query: 95  GIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA 146
            +  M  G      +   + YG              +E L F+I +I   K+
Sbjct: 165 ALQLMPAGSTWEIYVPSGLAYGPRS----VGGPIGPNETLIFKIHLISVKKS 212

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 58.7 bits (141), Expect = 3e-09
 Identities = 20/128 (15%), Positives = 47/128 (36%), Gaps = 19/128 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            + L ++GK + A   Y++ +R    ++P   +            + N+   L ++ + +
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIR----ISPTFAD-----------AYSNMGNTLKEMQDVQ 94

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
            +++   + +  NPA           +   G   EA   +   +K+     PD   A   
Sbjct: 95  GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK----PDFPDAYCN 150

Query: 525 LKKQRRKL 532
           L    + +
Sbjct: 151 LAHCLQIV 158

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 55.6 bits (133), Expect = 3e-08
 Identities = 22/144 (15%), Positives = 50/144 (34%), Gaps = 21/144 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            N   ++G  E A   Y K L     V P+               H N+A+ L + G+ +
Sbjct: 16  ANIKREQGNIEEAVRLYRKALE----VFPEFAA-----------AHSNLASVLQQQGKLQ 60

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           +++    + +  +P         G     + + + A + +   ++++    P    A S 
Sbjct: 61  EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN----PAFADAHSN 116

Query: 525 LKKQRRKLKVRLENSLKGCLTRSL 548
           L    +     +  ++      +L
Sbjct: 117 LASIHKDSG-NIPEAIA-SYRTAL 138

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 48.3 bits (114), Expect = 6e-06
 Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
             A+     GN L +    + A   Y + ++    +NP   +            H N+A+
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQ----INPAFAD-----------AHSNLAS 119

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                G   ++I +    L   P               + ++ +     +
Sbjct: 120 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 13/109 (11%)

Query: 274 IRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGF 333
           +  G G  P      +  + V Y G L +   K+F     D   QP  F     ++  G+
Sbjct: 124 LTPGTGPKPDA----NGRVEVRYVGRLPD--GKIF-----DQSTQPQWFRLD-SVIS-GW 170

Query: 334 EMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382
              ++ M  G    +  P D AY        +     + +EIEL+   +
Sbjct: 171 TSALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIAVSQ 219

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 14/111 (12%)

Query: 35  VMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLE 94
            + PG G   P    +V      R  DG I + +         P    L    ++ G   
Sbjct: 123 ELTPGTGPK-PDANGRVEVRYVGRLPDGKIFDQS-------TQPQWFRLD--SVISGWTS 172

Query: 95  GIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK 145
            +  M  G      +     YG +     A         L FEIE+I  ++
Sbjct: 173 ALQNMPTGAKWRLVIPSDQAYGAEG----AGDLIDPFTPLVFEIELIAVSQ 219

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 53.6 bits (130), Expect = 4e-09
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  +K+G ++ A   Y+K L     ++P + E              N+     K G+  
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALE----LDPNNAE-----------AWYNLGNAYYKQGDYD 60

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++IE   K L+ +P + +  Y  G AY   G+++EA   ++
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 44.3 bits (106), Expect = 8e-06
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 10/74 (13%)

Query: 432 NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491
           +P +  E             N+     K G+  ++IE   K L+ +P + +  Y  G AY
Sbjct: 4   DPGNSAEA----------WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 53

Query: 492 MALGEFEEAQRDFE 505
              G+++EA   ++
Sbjct: 54  YKQGDYDEAIEYYQ 67

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 43.5 bits (104), Expect = 1e-05
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 15/91 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  +K+G ++ A   Y+K L     ++P + E              N+     K G+  
Sbjct: 50  GNAYYKQGDYDEAIEYYQKALE----LDPNNAE-----------AWYNLGNAYYKQGDYD 94

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALG 495
           ++IE   K L+ +P + +     G A    G
Sbjct: 95  EAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 54.8 bits (133), Expect = 9e-09
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 16/102 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G      G+ + A+A  ++ L     +    +            +   +A   L +G   
Sbjct: 125 GLVYALLGERDKAEASLKQALA----LEDTPE------------IRSALAELYLSMGRLD 168

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 506
           +++    K L+  P  +    R   A +  G+ EEA R   +
Sbjct: 169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 26/112 (23%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G +L+  G+++ A   +E+ L+     NPQD E               +A   LKLG   
Sbjct: 12  GVQLYALGRYDAALTLFERALK----ENPQDPE-----------ALYWLARTQLKLGLVN 56

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMAL-----------GEFEEAQRDFE 505
            ++E    ++   P ++ G      AY+AL           G  E+A    +
Sbjct: 57  PALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLK 108

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 51.8 bits (125), Expect = 9e-08
 Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 22/133 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----EGKVFVGKRNLLHLNVAACLLKL 460
                K G    A    + ++       P+         + +V     L+          
Sbjct: 46  ARTQLKLGLVNPALENGKTLVA----RTPRYLGGYMVLSEAYVA----LYRQAEDRERGK 97

Query: 461 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA 520
           G   +++         NP +     +RG+ Y  LGE ++A+   +  + ++         
Sbjct: 98  GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE----DTPEI 153

Query: 521 ------ALSKLKK 527
                     + +
Sbjct: 154 RSALAELYLSMGR 166

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 16/108 (14%)

Query: 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 457
               R   +R   +G  E A +  +   R    VNP+              LHL      
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAER----VNPRYAP-----------LHLQRGLVY 128

Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             LGE  K+  +  + L       +        Y+++G  +EA   + 
Sbjct: 129 ALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYA 175

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 12/56 (21%), Positives = 20/56 (35%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            L +   L  LG    ++    + L  NP   + LY      + LG    A  + +
Sbjct: 8   PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGK 63

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 12/94 (12%)

Query: 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471
           G    A   YEK +   + +  +D  E           +L + +    LGE RK+     
Sbjct: 4   GLEAQAVPYYEKAIA--SGLQGKDLAEC----------YLGLGSTFRTLGEYRKAEAVLA 51

Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             +   P H        M    LG +E+      
Sbjct: 52  NGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLL 85

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 16/90 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G+     G++  A+A     ++ F    P               L +  A  L  LG   
Sbjct: 34  GSTFRTLGEYRKAEAVLANGVKQF----PNHQA-----------LRVFYAMVLYNLGRYE 78

Query: 465 KSIEACNKVLDANPAHVK-GLYRRGMAYMA 493
           + +E   K++           Y++ + + A
Sbjct: 79  QGVELLLKIIAETSDDETIQSYKQAILFYA 108

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 12/138 (8%), Positives = 29/138 (21%), Gaps = 19/138 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D+   I             +       +       + P                  +   
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAHG----LTPDQVVA-----------IASHGG 302

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +        AL   +           +     
Sbjct: 303 GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLT---- 358

Query: 516 PDATAALSKLKKQRRKLK 533
           PD   A++     ++ L+
Sbjct: 359 PDQVVAIASNGGGKQALE 376

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.8 bits (134), Expect = 3e-08
 Identities = 10/137 (7%), Positives = 26/137 (18%), Gaps = 19/137 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +         P                  +   
Sbjct: 597 VQVVAIASNIGGKQALETVQRLLPVLCQAHGL----TPAQVV-----------AIASHDG 641

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +   G    AL   +           +     
Sbjct: 642 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---- 697

Query: 516 PDATAALSKLKKQRRKL 532
            +   A++     ++ L
Sbjct: 698 QEQVVAIASNNGGKQAL 714

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.0 bits (132), Expect = 5e-08
 Identities = 14/154 (9%), Positives = 35/154 (22%), Gaps = 21/154 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +       + P                  +   
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHG----LTPAQVVA-----------IASHDG 234

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +        AL   +           +     
Sbjct: 235 GKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLT---- 290

Query: 516 PDATAALSKLKKQRRKLKVRLENSLKGCLTRSLG 549
           PD   A++     ++ L+  ++  L   L ++ G
Sbjct: 291 PDQVVAIASHGGGKQALE-TVQRLLP-VLCQAHG 322

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 13/128 (10%), Positives = 27/128 (21%), Gaps = 19/128 (14%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D+   I   G         +       +       + P                  +   
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHG----LTPDQVV-----------AIASHDG 336

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +   G    AL   +           +     
Sbjct: 337 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---- 392

Query: 516 PDATAALS 523
           PD   A++
Sbjct: 393 PDQVVAIA 400

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 14/154 (9%), Positives = 34/154 (22%), Gaps = 21/154 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D+   I   G         +       +       + P                  +   
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTPDQVVA-----------IASNGG 573

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +        V  +        AL   +                 
Sbjct: 574 GKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQ----AHGLT 629

Query: 516 PDATAALSKLKKQRRKLKVRLENSLKGCLTRSLG 549
           P    A++     ++ L+  ++  L   L ++ G
Sbjct: 630 PAQVVAIASHDGGKQALE-TVQRLLP-VLCQAHG 661

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.6 bits (123), Expect = 6e-07
 Identities = 10/138 (7%), Positives = 27/138 (19%), Gaps = 19/138 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +       + P                  +   
Sbjct: 631 AQVVAIASHDGGKQALETVQRLLPVLCQAHG----LTPDQVVA-----------IASNGG 675

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +        V  +        AL   +           +     
Sbjct: 676 GKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLT---- 731

Query: 516 PDATAALSKLKKQRRKLK 533
           PD   A++     ++ L+
Sbjct: 732 PDQVVAIASNGGGKQALE 749

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 9/110 (8%), Positives = 21/110 (19%), Gaps = 15/110 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D+   I   G         +       +       +  +                 +   
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTQEQVVA-----------IASNNG 709

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
               L   ++ +    +     P  V  +   G    AL   +       
Sbjct: 710 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 759

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 11/130 (8%), Positives = 25/130 (19%), Gaps = 20/130 (15%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D+   I   G         +       +       + P                  +   
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTPDQVV-----------AIASNGG 404

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +        AL   +           +     
Sbjct: 405 -KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLT---- 459

Query: 516 PDATAALSKL 525
           P    A++  
Sbjct: 460 PAQVVAIASH 469

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 9e-05
 Identities = 7/110 (6%), Positives = 17/110 (15%), Gaps = 15/110 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +                            +   
Sbjct: 461 AQVVAIASHDGGKQALETVQQLLPVLCQAHG-LTPDQVV--------------AIASNIG 505

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
               L   ++ +    +     P  V  +   G    AL   +       
Sbjct: 506 GKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 555

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 14/132 (10%), Positives = 41/132 (31%), Gaps = 19/132 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-- 462
           G     +  +  +   Y + L+    +  ++ E           L+  +A  L       
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQ----LRGENAE-----------LYAALATVLYYQASQH 95

Query: 463 -CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA 521
              ++    +K L  +   +  L            + +A   ++ +M ++ S   + T  
Sbjct: 96  MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN-SPRINRTQL 154

Query: 522 LSKLKKQRRKLK 533
           +  +   +   +
Sbjct: 155 VESINMAKLLQR 166

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 7/69 (10%), Positives = 22/69 (31%), Gaps = 4/69 (5%)

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
                     ++A    + ANP + +     G  Y+   ++  +   +   +++      
Sbjct: 20  FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR----G 75

Query: 517 DATAALSKL 525
           +     + L
Sbjct: 76  ENAELYAAL 84

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 54.6 bits (131), Expect = 5e-08
 Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 23/138 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLH-LNVAACLLKLGEC 463
           G   +K+G    A   +   L                      +L  L   +        
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTH----CKNKV----SLQNLSMVLRQLQTDSGDEHSRHV 195

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMA--------LGEFEEAQRDFEMMMKVDKSSE 515
             S+      +  +    +  Y  G AY++            ++A   +    KVD+ + 
Sbjct: 196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255

Query: 516 PDATA------ALSKLKK 527
            +              + 
Sbjct: 256 SNPDLHLNRATLHKYEES 273

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 51.2 bits (122), Expect = 5e-07
 Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 16/96 (16%)

Query: 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEA 469
           + + E    + E+VL         + +             +     L    +   ++   
Sbjct: 81  QEEMEKTLQQMEEVLGS----AQVEAQ-----------ALMLKGKALNVTPDYSPEAEVL 125

Query: 470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +K +   P  V+   + G  Y   G+   A   F 
Sbjct: 126 LSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 12/100 (12%)

Query: 406 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK 465
           N        + A + Y +  +  +     + +           LHLN A          +
Sbjct: 229 NTGQNPKISQQALSAYAQAEK-VDRKASSNPD-----------LHLNRATLHKYEESYGE 276

Query: 466 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++E  ++    +PA  +   R       L           
Sbjct: 277 ALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 13/117 (11%), Positives = 33/117 (28%), Gaps = 20/117 (17%)

Query: 417 AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476
              + E +L         +             L   +     +  +   ++      LD 
Sbjct: 4   ITERLEAMLA----QGTDNML-----------LRFTLGKTYAEHEQFDAALPHLRAALDF 48

Query: 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDATAALSKLKKQ 528
           +P +       G      G+   A++ +E  +       D+    +    L +L ++
Sbjct: 49  DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARE 105

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 52.5 bits (126), Expect = 8e-08
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 13/109 (11%)

Query: 274 IRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGF 333
           +  GKGE P D       + V+YKG L++   K F D      G+PL F      V  G+
Sbjct: 128 VEAGKGEAPKD----SDTVVVNYKGTLID--GKEF-DNSYTR-GEPLSFRLDG--VIPGW 177

Query: 334 EMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFE 381
              ++ +  G    +  PP+ AY K       +P  + + +++ELL  +
Sbjct: 178 TEGLKNIKKGGKIKLVIPPELAYGK--AGVPGIPPNSTLVFDVELLDVK 224

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 12/108 (11%)

Query: 35  VMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLE 94
           V+  G G++ P D D V  +     +DG   +++ +    +G P+   L    ++ G  E
Sbjct: 127 VVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRLD--GVIPGWTE 179

Query: 95  GIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
           G+  + KG      + P++ YG+   P       P +  L F++E++D
Sbjct: 180 GLKNIKKGGKIKLVIPPELAYGKAGVP-----GIPPNSTLVFDVELLD 222

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 507
                +A   LK     +++    ++++ +P +V   Y  G  Y  L   ++A   +   
Sbjct: 8   FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67

Query: 508 MKVDKSSEPDATAALSKLKKQRRKLK 533
           ++V +  E      LS+L+  + K +
Sbjct: 68  IEVAR-EEGTQK-DLSELQDAKLKAE 91

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 9/100 (9%), Positives = 25/100 (25%), Gaps = 17/100 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                K      A A +E+++      +P                + ++     +L    
Sbjct: 14  AQEHLKHDNASRALALFEELVE----TDPDYVG-----------TYYHLGKLYERLDRTD 58

Query: 465 KSIEACNKVLDANPAHVKGLYRRGM--AYMALGEFEEAQR 502
            +I+   + ++             +  A +     E    
Sbjct: 59  DAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHH 98

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 16/131 (12%)

Query: 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI 467
             K GK++ A     ++   F  + P                   +          + + 
Sbjct: 12  ALKNGKYDDA----SQLFLSFLELYPNGVYTPNA--------LYWLGESYYATRNFQLAE 59

Query: 468 EACNKVLDANPAHVK---GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
                ++   P H K   GL + G++    G+  EAQ+  + +      S+  A  A  +
Sbjct: 60  AQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA-ARVAQER 118

Query: 525 LKKQRRKLKVR 535
           L+  R   ++R
Sbjct: 119 LQSIRLGQQLR 129

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLY-RRGMAYMALGEFEEAQRDFEMMM 508
            L     L+  G+   +++A  + L   P      Y   G AY  LG++++A  +++  +
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62

Query: 509 KVDKSSEPDATAALSKLK 526
           +++    PD+ A  ++  
Sbjct: 63  ELN----PDSPALQARKM 76

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 463
           T   L  +G  E A    E+ L+      P   +E           +  +     KLG+ 
Sbjct: 6   TIKELINQGDIENALQALEEFLQ----TEPVGKDE----------AYYLMGNAYRKLGDW 51

Query: 464 RKSIEACNKVLDANP 478
           +K++      ++ NP
Sbjct: 52  QKALNNYQSAIELNP 66

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 43.9 bits (105), Expect = 6e-06
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 15/91 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  +K+G ++ A   Y+K L     ++P + E              N+     K G+  
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALE----LDPNNAE-----------AWYNLGNAYYKQGDYD 60

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALG 495
           ++IE   K L+ +P + +     G A    G
Sbjct: 61  EAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 41.2 bits (98), Expect = 4e-05
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 10/74 (13%)

Query: 432 NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491
           +P +  E             N+     K G+  ++IE   K L+ +P + +  Y  G AY
Sbjct: 4   DPGNSAEA----------WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 53

Query: 492 MALGEFEEAQRDFE 505
              G+++EA   ++
Sbjct: 54  YKQGDYDEAIEYYQ 67

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 46.8 bits (111), Expect = 8e-06
 Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 15/139 (10%)

Query: 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 452
           G  D A        +L +      A   Y++    F      ++EE      +   L   
Sbjct: 110 GTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVF------ENEERLRQAAE---LIGK 160

Query: 453 VAACLLKLGECRKSIEACNKVLDAN------PAHVKGLYRRGMAYMALGEFEEAQRDFEM 506
            +  L++  +  ++  +  K           P   K    + +  +   ++  AQ+    
Sbjct: 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220

Query: 507 MMKVDKSSEPDATAALSKL 525
              +   S  +  AAL  L
Sbjct: 221 SYSIPGFSGSEDCAALEDL 239

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 23/137 (16%)

Query: 294 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 353
           + Y+     +   +  D+ +    +PLEF  G   +  G E  V     GE   V   P+
Sbjct: 15  IEYEVRE--QGSSIVLDSNIS--KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPE 70

Query: 354 YAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGK 413
            AY  +   + +        E+    FE  +   G+S  G  ++ + I+           
Sbjct: 71  EAYGVY-ESSYL-------QEVPRDQFEGIELEKGMSVFGQTEDNQTIQAI--------- 113

Query: 414 FELAKAKYEKVLRDFNH 430
             +       V+ D+NH
Sbjct: 114 --IKDFSATHVMVDYNH 128

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 12/109 (11%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE----GKVFVGKRNLLHLNVAACLLKL 460
                ++ + + A    +K L       P +       G  +  K   +       +   
Sbjct: 254 AKFYRRKDEPDKAIELLKKALE----YIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309

Query: 461 GEC----RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +       ++    K  +AN    +        +    ++EEA+  F+
Sbjct: 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQ 358

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 26/124 (20%)

Query: 409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL---GECRK 465
               + E AK  +EK L       P++ E               +A    +L      + 
Sbjct: 149 CGGNQNERAKVCFEKALE----KKPKNPE-----------FTSGLAIASYRLDNWPPSQN 193

Query: 466 SIEACNKVLDANPAHVKGLYRRGMAYMAL----GEFEEAQRDFEMMMKVDKSSEPDATAA 521
           +I+   + +  NP +        +    +     E  E ++  E  ++      P  T  
Sbjct: 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA----PGVTDV 249

Query: 522 LSKL 525
           L   
Sbjct: 250 LRSA 253

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 17/116 (14%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
               ++ + G RL K G      + +E  ++        +D +         +    +  
Sbjct: 7   ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLK-----TLSAIYS-QLGN 55

Query: 456 CLLKLGECRKSIEACNKVLDA------NPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
               L +  K++E  +  L             K     G     LG F+EA    +
Sbjct: 56  AYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQ 111

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 289 DSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALV 348
           +S + VH+   L  ++      TR  N+G+P  F  G+  + EG E  +  +  G+    
Sbjct: 28  NSAVLVHFTLKL--DDGTTAESTR--NNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTF 83

Query: 349 TCPPDYAY 356
           +  PD A+
Sbjct: 84  SLEPDAAF 91

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 16/104 (15%)

Query: 46  SDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVS 105
                V  H T++  DG   ESTR+       P    LG + +  GL + +  +  G+ +
Sbjct: 26  QSNSAVLVHFTLKLDDGTTAESTRNNGK----PALFRLGDASLSEGLEQHLLGLKVGDKT 81

Query: 106 MFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKII 149
            F ++P   +G                +L       +F  A   
Sbjct: 82  TFSLEPDAAFGV------------PSPDLIQYFSRREFMDAGEP 113

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 23/139 (16%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
              ++ + G RL K G      + +E  ++                     +    +   
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK----------TLSAIYS-QLGNA 52

Query: 457 LLKLGECRKSIEACNKVLDA------NPAHVKGLYRRGMAYMALGEFEEA----QRDFEM 506
              L +  K++E  +  L             K     G     LG F+EA    QR  ++
Sbjct: 53  YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 112

Query: 507 MMKVDKSSEPDATAALSKL 525
             +++   +     AL  L
Sbjct: 113 SRELND--KVGEARALYNL 129

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 7/105 (6%)

Query: 420 KYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL-KLGECRKSIEACNKVLDANP 478
           ++  V+          D+    F+     +   VAA  L    E  + +   N       
Sbjct: 150 RWTDVIDQVKSAGKWPDK----FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEA 205

Query: 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523
                 +   MA  + G    A    E +       EP   AAL 
Sbjct: 206 CARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAALK 248

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 289 DSLLCVHYKGMLLN---------EEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL 339
              + V Y G L +         E  K       D + +PLEF  GEG + +GFE  V  
Sbjct: 5   GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64

Query: 340 MLPGEIALVTCPPDYAY 356
           M  G+   V  P + AY
Sbjct: 65  MEVGDEKTVKIPAEKAY 81

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 46  SDGDQVAYHCTVRTLDGVIVESTRSEYGGK---------GIPIRHVLGKSKILLGLLEGI 96
             G ++      +   G + +++  E   +           P+  V+G+ +++ G  E +
Sbjct: 3   DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62

Query: 97  PTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKI 148
             M  G+    K+  +  YG             ++E L  +I    F +A  
Sbjct: 63  LDMEVGDEKTVKIPAEKAYGN------------RNEMLIQKIPRDAFKEADF 102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 55/397 (13%), Positives = 108/397 (27%), Gaps = 131/397 (32%)

Query: 253 ELVHLIQVRDMLGDGRLIKRRIRDGKGE-----FPMDCPLHD------SLLCVHYKGMLL 301
           E+ H+I  +D +     +   +   K E     F ++  L        S +    +   +
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLS-KQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSM 107

Query: 302 NEEKKVFYDTRVDNDGQP-------------------LEFSSGEGLVPEG---------- 332
                +    R+ ND Q                    LE    + ++ +G          
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 333 FEMC----VRLMLPGEI-----ALVTCPPD---------YAYDKFL-----RPANVPEGA 369
            ++C    V+  +  +I          P           Y  D          +N+    
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 370 H-IQWEIELLGFEKP-----------KDWTGL-SFD------------GIMDEAEKIRVT 404
           H IQ E+  L   KP           ++     +F+             + D       T
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD-FLSAATT 286

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD-EEGKVFVGKRNLLHLNVAACLLKLGEC 463
            +         L   + + +L  +    PQD   E        N   L++ A  ++ G  
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL----TTNPRRLSIIAESIRDGLA 342

Query: 464 R-------------KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
                           IE+   VL+  PA  + ++        L  F        +   +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKMFD------RLSVFPP---SAHIPTIL 391

Query: 511 -------DKSSEPDATAAL----SKLKKQRRKLKVRL 536
                     S+           S ++KQ ++  + +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 6e-04
 Identities = 55/449 (12%), Positives = 117/449 (26%), Gaps = 129/449 (28%)

Query: 176 KAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT- 234
           K W++        +    + + ++        P+ +      +   +K +  +   + + 
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV------LEMLQKLLYQIDPNWTSR 216

Query: 235 PSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGK--GEFPMDCP------ 286
                 +      +  + EL  L++ +    +  L+   +++ K    F + C       
Sbjct: 217 SDHSSNIKLRIHSI--QAELRRLLKSKP-YENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 287 ---LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE-FS-----SGEGLVPEGFEMCV 337
              + D L       + L+               +             + L P   E+  
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPD------EVKSLLLKYLDCRPQDL-PR--EVL- 323

Query: 338 RLMLPGEIALV-------TCPPDY----AYDKF----------LRPANV----------P 366
               P  ++++           D       DK           L PA            P
Sbjct: 324 -TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 367 EGAHIQWE-IELLGFEKPKDWTGLSFDGIMDEAEKIRVTG--NRLFKEGKFELAKAKYEK 423
             AHI    + L+       W  +    +M    K+       +  KE    +       
Sbjct: 383 PSAHIPTILLSLI-------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI----PSI 431

Query: 424 VLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 483
            L     +  + + E          LH             R  ++  N     +   +  
Sbjct: 432 YLE----LKVKLENEYA--------LH-------------RSIVDHYNIPKTFDSDDLIP 466

Query: 484 LYRRGMAYMALG----EFEEAQR---------DFEMM-MKVDKSSEP-----DATAALSK 524
            Y     Y  +G      E  +R         DF  +  K+   S            L +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Query: 525 LKKQRRKLKVRLENSLKGCLTRSLGKFLK 553
           LK  +  +    +   +  L  ++  FL 
Sbjct: 527 LKFYKPYI-CDNDPKYER-LVNAILDFLP 553

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 289 DSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALV 348
           D ++ + Y+     E+  +  ++       PL++  G G +  G E  +     G+   V
Sbjct: 6   DLVVSLAYQVRT--EDGVLVDESP---VSAPLDYLHGHGSLISGLETALEGHEVGDKFDV 60

Query: 349 TCPPDYAY 356
               + AY
Sbjct: 61  AVGANDAY 68

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 13/82 (15%), Positives = 30/82 (36%)

Query: 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
           L   + LL+ GE  +++     + D   +       +    +   +FE AQ     +   
Sbjct: 10  LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69

Query: 511 DKSSEPDATAALSKLKKQRRKL 532
            + +   +  A  +L +Q  + 
Sbjct: 70  YQDNSYKSLIAKLELHQQAAES 91

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 288 HDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIAL 347
            D ++ + Y+    +    +  ++       PL++  G G +  G E  +     G+   
Sbjct: 5   KDLVVSLAYQVRTEDGV--LVDESP---VSAPLDYLHGHGSLISGLETALEGHEVGDKFD 59

Query: 348 VTCPPDYAY 356
           V    + AY
Sbjct: 60  VAVGANDAY 68

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 22/135 (16%)

Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHL 451
           DG      ++ + G RL   G      A ++  ++       +D            +   
Sbjct: 42  DGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQ----AGTEDLR------TLSAIYS- 90

Query: 452 NVAACLLKLGECRKSIEACNKVL------DANPAHVKGLYRRGMAYMALGEFEEA----Q 501
            +      LG+  K+++     L      +      K     G     +G F+EA    +
Sbjct: 91  QLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCE 150

Query: 502 RDFEMMMKV-DKSSE 515
           R   +  ++ D+ SE
Sbjct: 151 RHLTLARQLGDRLSE 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	553
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	100.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.92
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.92
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.91
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.91
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.91
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.9
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.9
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.9
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.9
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.89
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.89
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.89
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.89
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.89
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.88
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.88
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.88
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.88
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.88
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.88
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.88
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.87
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.87
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.87
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.87
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.87
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.86
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.86
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.86
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.85
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.85
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.85
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.85
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.84
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.84
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.84
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.84
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.83
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.82
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.82
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.82
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.81
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.81
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.81
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.81
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.8
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.79
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.79
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.79
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.79
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.78
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.77
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.75
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.69
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.69
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.66
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.63
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.62
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.62
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.61
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.61
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.6
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.59
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.58
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.57
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.57
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.56
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.55
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.54
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.54
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.52
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.52
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.51
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.5
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.49
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.48
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.46
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.44
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.43
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.43
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.42
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.42
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.41
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.41
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.4
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.4
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.4
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.4
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.39
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.38
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.38
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.35
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.32
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.32
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.31
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.31
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.31
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.31
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.3
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.28
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.28
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.27
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.27
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.26
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.24
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.23
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.22
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.2
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.2
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.16
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.15
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.15
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.13
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.12
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.12
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.12
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.11
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.1
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.1
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.09
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.06
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.02
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.01
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.01
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.01
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.0
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.0
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.99
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.98
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.98
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.98
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.98
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.97
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.96
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.96
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.96
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.95
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.94
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.94
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.94
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.94
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.94
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.94
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.94
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.94
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.93
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.93
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.93
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.93
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.92
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.92
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.92
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.91
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	98.91
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.91
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.9
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.9
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.89
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.89
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.88
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.87
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.86
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.86
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.85
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.84
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.83
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.82
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.8
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.8
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.8
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.8
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.79
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.78
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.75
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.75
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.74
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.74
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.73
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.72
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.71
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.7
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.69
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.69
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.69
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.68
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.67
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.66
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.66
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.66
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.66
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.64
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.64
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.63
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.63
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.63
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.62
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.61
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.61
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.61
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.6
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.59
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.59
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.57
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.56
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.56
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.54
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.54
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.53
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.51
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.51
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.5
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.5
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.5
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.49
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.49
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.48
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.48
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.47
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.47
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.46
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.45
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.45
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.42
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.41
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.4
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.4
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.39
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.38
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.37
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.37
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.37
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.36
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.35
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.32
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.3
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.28
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.25
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.18
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.16
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.13
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.12
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.1
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.08
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.05
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.05
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.03
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.01
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.98
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.96
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.86
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.78
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	97.74
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.66
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.64
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	97.63
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.59
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.57
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.55
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.55
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.54
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.45
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.4
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.33
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.33
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.29
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.24
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.24
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.16
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.12
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	96.89
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.75
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.74
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.59
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.39
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.34
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.32
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.36
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.35
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.32
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.71
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.04
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.62
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	93.62
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	93.33
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	93.01
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	91.48
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.29
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.06
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	90.85
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	90.34
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	90.27
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	88.86
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	86.57
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	86.13
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	86.09
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	85.0
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	84.4
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	84.22
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	81.6
2wb7_A	526	PT26-6P; extra chromosomal elements, unknown funct	81.45

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=8.7e-65  Score=519.70  Aligned_cols=344  Identities=32%  Similarity=0.529  Sum_probs=212.3

Q ss_pred             hccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCC
Q 008788           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (553)
Q Consensus        22 ~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~  101 (553)
                      +...++++||+|+++++|+|...|+.||.|.+||++++.||++|+||+.    ++.|+.|.+|.+++++||+++|.+|++
T Consensus         4 ~~~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~~~lG~g~~i~g~e~~l~gm~~   79 (356)
T 3jxv_A            4 EENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRD----RDDTFKFKLGQGQVIKGWDQGIKTMKK   79 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccceECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECCCCEEEEccc----CCCcEEEEeCCCccchHHHHHHhcCCC
Confidence            3456789999999999999976699999999999999999999999997    678999999999999999999999999


Q ss_pred             CcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeeccccccCCCCeEEEEEecCCCcCCCCCCceEEEEEEE
Q 008788          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISA  181 (553)
Q Consensus       102 G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~~~~~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~  181 (553)
                      |+++.|+|||++|||..+.+    +.||++++|+|+|+|++|.++.++..|.++.++++++|.|+.+|..||.|+|||++
T Consensus        80 Ge~~~~~ip~~~aYG~~g~~----~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g  155 (356)
T 3jxv_A           80 GENALFTIPPELAYGESGSP----PTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEA  155 (356)
T ss_dssp             ------------------------------------------CCEEETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEE
T ss_pred             CCEEEEEEChHHhCCCCCCC----CCcCCCCEEEEEeeEEeeecccccccCceeEEEEEecCcccCCCCCCCEEEEEEEE
Confidence            99999999999999999876    68999999999999999998888899999999999999999999999999999999


Q ss_pred             EeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCC------CCCCCceEEEEEEEe
Q 008788          182 KTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP------VVEGCEEVHFEVELV  255 (553)
Q Consensus       182 ~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~------~i~~~~~l~~~v~l~  255 (553)
                      ++.||++|+++   .++.|.+|.+++++||+++|.+|++||+++++|||+++||+.+.+      .||++++|+|+|+|+
T Consensus       156 ~l~dgt~~~~~---~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~  232 (356)
T 3jxv_A          156 RLEDGTVVSKS---EGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELV  232 (356)
T ss_dssp             EETTSCEEEEE---EEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEE
T ss_pred             EECCCCEEecc---CCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEE
Confidence            99999999987   379999999999999999999999999999999999999985332      599999999999999


Q ss_pred             eeeeeeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHH
Q 008788          256 HLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEM  335 (553)
Q Consensus       256 ~~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~  335 (553)
                      +|..+.|++.|++++++++++|.|..   .|..|+.|+|||++++.|  |++|+++... +++|+.|.+|.+++|+||+.
T Consensus       233 ~~~~v~dv~~d~~~~~~i~~~g~g~~---~~~~gd~V~v~y~g~l~d--G~~fd~~~~~-~~~p~~f~~G~g~~i~G~e~  306 (356)
T 3jxv_A          233 SWKTVTEIGDDKKILKKVLKEXEGYE---RPNEGAVVTVKITGKLQD--GTVFLKKGHD-EQEPFEFKTDEEAVIEGLDR  306 (356)
T ss_dssp             EEECEEEESTTCCEEEEEEECCBSSC---CCCTTCEEEEEEEEEESS--SCEEEEESCT-TSCCCEEETTTTSSCHHHHH
T ss_pred             EEecccccccccceeEEeeecccccC---CCCCCCEEEEEEEEEECC--CCEEeecccc-CCcCEEEEECCCccchHHHH
Confidence            99999999999999999999999953   358999999999999976  9999766443 47899999999999999999


Q ss_pred             HHhcCCCCcEEEEEeCCCCcccCCCC--CCCCCCCCeEEEEEEEeeeec
Q 008788          336 CVRLMLPGEIALVTCPPDYAYDKFLR--PANVPEGAHIQWEIELLGFEK  382 (553)
Q Consensus       336 ~l~~M~~GE~~~~~~~~~~~yg~~g~--~~~ip~~~~l~~~ieL~~~~~  382 (553)
                      +|.+|++||++.|+|||+++||..+.  ...||++++++|+|+|+++++
T Consensus       307 ~l~gm~~Ge~~~v~ip~~~aYG~~~~~~~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          307 AVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             HHTTCCBTCEEEEEECGGGTTTTSCEESSSEECTTCCEEEEEEEEEEEC
T ss_pred             HHhCCCCCCEEEEEEChHHccCCCCcCCCCcCCcCCeEEEEEEEEEEEc
Confidence            99999999999999999999998873  357899999999999999874

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=3e-56  Score=474.59  Aligned_cols=383  Identities=29%  Similarity=0.466  Sum_probs=323.6

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (553)
Q Consensus       151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~  229 (553)
                      .+.|+.+.++++|.|...|+.||.|+|||++++.||++|+||. .+.|+.|.+|.+++++||+++|.+|++||+++|+||
T Consensus        29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~  108 (457)
T 1kt0_A           29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCK  108 (457)
T ss_dssp             ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEC
Confidence            5789999999999996669999999999999999999999986 468999999999999999999999999999999999


Q ss_pred             CCccCCCC-CCCCCCCCceEEEEEEEeeeeeeeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEE
Q 008788          230 SQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVF  308 (553)
Q Consensus       230 ~~~~~g~~-~~~~i~~~~~l~~~v~l~~~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~  308 (553)
                      |+++||.. .++.||++++++|+|+|++|... |++.|++++++++++|.|..   +|..|+.|+|||+|++ +  |++|
T Consensus       109 ~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~~-~~~~dg~~~k~i~~~g~~~~---~p~~g~~V~v~y~g~~-~--g~~f  181 (457)
T 1kt0_A          109 PEYAYGSAGSLPKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYS---NPNEGATVEIHLEGRC-G--GRMF  181 (457)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-ETTSSSSEEEEEEECCBCSC---CCCTTCEEEEEEEEEE-T--TEEE
T ss_pred             hHHhccccCCCCCCCCCCcEEEEEeeceeecc-cccCCcceEEEEEecCCCCC---CCCCCCEEEEEEEEEe-C--CeEE
Confidence            99999985 45789999999999999999764 88899999999999998863   4689999999999998 4  7887


Q ss_pred             EeccCCCCCCCeEEEeCCCC---chhHHHHHHhcCCCCcEEEEEeCCCCcccCCCCCC-CCCCCCeEEEEEEEeeeecCC
Q 008788          309 YDTRVDNDGQPLEFSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPK  384 (553)
Q Consensus       309 ~~s~~~~~~~~~~f~lG~~~---v~~g~e~~l~~M~~GE~~~~~~~~~~~yg~~g~~~-~ip~~~~l~~~ieL~~~~~~~  384 (553)
                       ++      ++++|.+|+|.   ++++|+.|+..|+.||++.+.++|.++|+..|... .||+++.+.|.+++..++...
T Consensus       182 -~~------~~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~  254 (457)
T 1kt0_A          182 -DC------RDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAK  254 (457)
T ss_dssp             -EE------EEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred             -ec------CceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCc
Confidence             43      25899999774   89999999999999999999999999999998654 689999999999999999999


Q ss_pred             CCCCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHH
Q 008788          385 DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR  464 (553)
Q Consensus       385 ~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~  464 (553)
                      +.+.+..+.....+..++..|+.+++.|+|.+|+..|++|++.........+++..........+|+|+|.||+++++|+
T Consensus       255 ~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~  334 (457)
T 1kt0_A          255 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT  334 (457)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             chhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            88889999999999999999999999999999999999999965443333345556677777899999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008788          465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCL  544 (553)
Q Consensus       465 ~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf  544 (553)
                      +|+.+|++||+++|+++++||++|.+|..+++|++|+.+|++|++++|++ ..+...+..+..++.+.+++++++|++||
T Consensus       335 ~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          335 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN-KAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999997 46888999999999999999999999999


Q ss_pred             cccc
Q 008788          545 TRSL  548 (553)
Q Consensus       545 ~~~~  548 (553)
                      ++..
T Consensus       414 ~k~~  417 (457)
T 1kt0_A          414 KKFA  417 (457)
T ss_dssp             ----
T ss_pred             hhhh
Confidence            8865

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=6e-44  Score=379.80  Aligned_cols=373  Identities=21%  Similarity=0.317  Sum_probs=274.4

Q ss_pred             CCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEE
Q 008788           27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM  106 (553)
Q Consensus        27 ~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~  106 (553)
                      +++||.|+|+++|+|...|+.||.|+|||++++.||++|+||+.    ++.|+.|.+|.+++++||+.+|.+|++|+++.
T Consensus        29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~----~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~  104 (457)
T 1kt0_A           29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATMKRGEICH  104 (457)
T ss_dssp             ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC----------CEEEETTSTTSCHHHHHHHTTCCTTCEEE
T ss_pred             CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCC----CCCCeEEEeCCcchhhHHHHHHhhCCCCCEEE
Confidence            79999999999999997799999999999999889999999987    67899999999999999999999999999999


Q ss_pred             EEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeeccccccCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCC
Q 008788          107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDG  186 (553)
Q Consensus       107 ~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~~~~~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g  186 (553)
                      |+|||+++||..|.+    +.||++++++|+|+|++|... ++..|.++++.++.+|.|+..|..|+.|+|||++++ +|
T Consensus       105 ~~i~~~~~yg~~g~~----~~i~~~~~l~~~v~l~~~~~~-~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~-~g  178 (457)
T 1kt0_A          105 LLCKPEYAYGSAGSL----PKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GG  178 (457)
T ss_dssp             EEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEECE-ETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE-TT
T ss_pred             EEEChHHhccccCCC----CCCCCCCcEEEEEeeceeecc-cccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEe-CC
Confidence            999999999998876    789999999999999999765 455788999999999999999999999999999988 89


Q ss_pred             cEEeecCCCCceEEEcCCCC---ccchHHHhhccCCcCcEEEEEEeCCccCCCCCC--CCCCCCceEEEEEEEeeeeeee
Q 008788          187 KLILSHREGEPYFFTFGKSE---VPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM--PVVEGCEEVHFEVELVHLIQVR  261 (553)
Q Consensus       187 ~~~~s~~~~~p~~~~~g~~~---~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~--~~i~~~~~l~~~v~l~~~~~~~  261 (553)
                      ++|++.    ++.|.+|.|.   ++++|+.||..|++||++.|.++|.++|+..+.  ..||+++.+.|.+.+.++.+..
T Consensus       179 ~~f~~~----~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~  254 (457)
T 1kt0_A          179 RMFDCR----DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAK  254 (457)
T ss_dssp             EEEEEE----EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred             eEEecC----ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCc
Confidence            999973    6899999774   899999999999999999999999999998653  3689999999999999986544


Q ss_pred             eccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCC-CCchhHHHHHHhcC
Q 008788          262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE-GLVPEGFEMCVRLM  340 (553)
Q Consensus       262 d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~-~~v~~g~e~~l~~M  340 (553)
                      +.+....          ...|    .   ....      ....|..+             |..|+ ..-+..++.++...
T Consensus       255 ~~~~~~~----------~~~~----~---~a~~------~~~~G~~~-------------~~~g~~~~A~~~y~~Al~~~  298 (457)
T 1kt0_A          255 ESWEMDT----------KEKL----E---QAAI------VKEKGTVY-------------FKGGKYMQAVIQYGKIVSWL  298 (457)
T ss_dssp             CGGGSCH----------HHHH----H---HHHH------HHHHHHHH-------------HHTTCHHHHHHHHHHHHHHH
T ss_pred             chhhcCH----------HHHH----H---HHHH------HHHHHHHH-------------HhCCCHHHHHHHHHHHHHHh
Confidence            3320000          0000    0   0000      00001111             01111 11344455554321


Q ss_pred             CCCcEEEEEeCCCCcccCCCCCCCCCCCCeEEEEEEEeeeecCCCCCCCChhhHHHHHHHHHhhhccccccCCHHHHHHH
Q 008788          341 LPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAK  420 (553)
Q Consensus       341 ~~GE~~~~~~~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~  420 (553)
                      .           ..              ..+         ..     ....+.....+..+.+.|..+++.++|++|+..
T Consensus       299 p-----------~~--------------~~~---------~~-----~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~  339 (457)
T 1kt0_A          299 E-----------ME--------------YGL---------SE-----KESKASESFLLAAFLNLAMCYLKLREYTKAVEC  339 (457)
T ss_dssp             T-----------TC--------------CSC---------CH-----HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             c-----------cc--------------ccC---------Ch-----HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            1           10              000         00     000111122467788999999999999999999


Q ss_pred             HHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 008788          421 YEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA  500 (553)
Q Consensus       421 Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A  500 (553)
                      |++||+    ++|.+           ..+|+++|.||+.+++|++|+.++++|++++|++..+++.++.++..++++++|
T Consensus       340 ~~~al~----~~p~~-----------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          340 CDKALG----LDSAN-----------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             HHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHh----cCCcc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999    67766           678999999999999999999999999999999999999999999999999988


Q ss_pred             HHH
Q 008788          501 QRD  503 (553)
Q Consensus       501 ~~~  503 (553)
                      .+.
T Consensus       405 ~~~  407 (457)
T 1kt0_A          405 DRR  407 (457)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=7.9e-42  Score=336.08  Aligned_cols=222  Identities=26%  Similarity=0.441  Sum_probs=205.4

Q ss_pred             CCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEE
Q 008788           27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM  106 (553)
Q Consensus        27 ~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~  106 (553)
                      +++||+|+++++|+|..+|+.||.|+|||++++.||++|++|++    ++.|+.|.+|.+++++||+.+|.+|++|+++.
T Consensus        49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~  124 (280)
T 1q1c_A           49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLD----RKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH  124 (280)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTT----SSSCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEeccc----CCCCEEEEECCcChhHHHHHHHhcCCCCCEEE
Confidence            79999999999999997799999999999999989999999986    67899999999999999999999999999999


Q ss_pred             EEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeecccccc--CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeC
Q 008788          107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIA--DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTG  184 (553)
Q Consensus       107 ~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~~~~~--~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~  184 (553)
                      |+|||++|||..+.+    +.||++++++|+|+|+++... ++.  .|.++.+.++++|.|+..|+.||.|+|||++++ 
T Consensus       125 v~ipp~~aYG~~g~~----~~Ip~~~~lvf~Vel~~i~~~-~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-  198 (280)
T 1q1c_A          125 ITCKPEYAYGSAGSP----PKIPPNATLVFEVELFEFKGE-DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-  198 (280)
T ss_dssp             EEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEECE-ECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-
T ss_pred             EEECcHHhCCCcCcc----CCCCCCCcEEEEEEeeeeccc-ccccccccceeEEeeecccccccccCCceEEEEEEEEe-
Confidence            999999999998875    689999999999999999764 333  778999999999999778999999999999987 


Q ss_pred             CCcEEeecCCCCceEEEcCCCC---ccchHHHhhccCCcCcEEEEEEeCCccCCCCCC--CCCCCCceEEEEEEEeeeee
Q 008788          185 DGKLILSHREGEPYFFTFGKSE---VPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM--PVVEGCEEVHFEVELVHLIQ  259 (553)
Q Consensus       185 ~g~~~~s~~~~~p~~~~~g~~~---~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~--~~i~~~~~l~~~v~l~~~~~  259 (553)
                      +|++|++    .|+.|.+|.++   +++||+++|.+|++||+++|+|||+++||..+.  ..||++++++|+|+|+++.+
T Consensus       199 dG~~fd~----~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~~~IP~~~~l~f~V~L~~i~~  274 (280)
T 1q1c_A          199 KDKLFDQ----RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEK  274 (280)
T ss_dssp             TTEEEEE----EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEEC
T ss_pred             CCEEEec----CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCccCccCCCCeEEEEEEEEEEeC
Confidence            9999997    48999999998   599999999999999999999999999998653  35999999999999999987


Q ss_pred             eee
Q 008788          260 VRD  262 (553)
Q Consensus       260 ~~d  262 (553)
                      .+|
T Consensus       275 ~~~  277 (280)
T 1q1c_A          275 AKE  277 (280)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            665

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=1.1e-38  Score=326.47  Aligned_cols=228  Identities=27%  Similarity=0.450  Sum_probs=209.4

Q ss_pred             cccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCc
Q 008788           24 MKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGE  103 (553)
Q Consensus        24 ~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~  103 (553)
                      ....++++.++++++|.|..+|..||.|.+||++++.||++|+++.        ++.|.+|.+.+++||+.+|.+|++||
T Consensus       122 di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt~~~~~~--------~~~f~~g~~~v~~gl~~~l~~m~~GE  193 (356)
T 3jxv_A          122 DIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSE--------GVEFTVKDGHLCPALAKAVKTMKKGE  193 (356)
T ss_dssp             ETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEEE--------EEEEEGGGCSSSHHHHHHHTTCCBTC
T ss_pred             ccccCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCCEEeccC--------CEEEEeCCCCcchHHHHHHhhCCCCC
Confidence            3446799999999999998789999999999999999999999774        69999999999999999999999999


Q ss_pred             EEEEEEcCCCccCCCCCCCCCC-CCCCCCCeEEEEEEEEeeeccccccCCCCeEEEEEecCCCcCCCCCCceEEEEEEEE
Q 008788          104 VSMFKMKPQMHYGEDDCPVAAP-STFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAK  182 (553)
Q Consensus       104 ~~~~~ip~~~a~g~~~~~~~~~-~~i~~~~~l~~~v~l~~~~~~~~~~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~  182 (553)
                      ++.++|||+++||..|++...+ ..||++++|+|+|+|++|....++..|.+++++++++|.|++.|+.||.|+|||+++
T Consensus       194 ~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~  273 (356)
T 3jxv_A          194 KVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGK  273 (356)
T ss_dssp             EEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEE
T ss_pred             EEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccccccceeEEeeecccccCCCCCCCEEEEEEEEE
Confidence            9999999999999998763211 259999999999999999988888888999999999999999999999999999999


Q ss_pred             eCCCcEEeecC--CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCC---CCCCCCCceEEEEEEEeee
Q 008788          183 TGDGKLILSHR--EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPL---MPVVEGCEEVHFEVELVHL  257 (553)
Q Consensus       183 ~~~g~~~~s~~--~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~---~~~i~~~~~l~~~v~l~~~  257 (553)
                      +.||++|+++.  .++|+.|.+|.+++++||+++|.+|++||+++|+|||+++||+.+   ...||+|++|+|+|+|++|
T Consensus       274 l~dG~~fd~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~~~~~~Ip~~~~l~f~vel~~~  353 (356)
T 3jxv_A          274 LQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSF  353 (356)
T ss_dssp             ESSSCEEEEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTSCEESSSEECTTCCEEEEEEEEEE
T ss_pred             ECCCCEEeeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEEEEEChHHccCCCCcCCCCcCCcCCeEEEEEEEEEE
Confidence            99999999873  478999999999999999999999999999999999999999864   3678999999999999998


Q ss_pred             ee
Q 008788          258 IQ  259 (553)
Q Consensus       258 ~~  259 (553)
                      .+
T Consensus       354 ~~  355 (356)
T 3jxv_A          354 VK  355 (356)
T ss_dssp             EC
T ss_pred             Ec
Confidence            63

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=2.2e-38  Score=311.53  Aligned_cols=223  Identities=30%  Similarity=0.441  Sum_probs=202.0

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (553)
Q Consensus       151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~  229 (553)
                      .+.++.++++++|.|..+|+.||.|+|||++++.||++|+++.. ++|+.|.+|.+++++||+++|.+|++||+++|+||
T Consensus        49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ip  128 (280)
T 1q1c_A           49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK  128 (280)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEEC
Confidence            57899999999999976699999999999999999999999864 68999999999999999999999999999999999


Q ss_pred             CCccCCCC-CCCCCCCCceEEEEEEEeeeeeeeecc--CCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCc
Q 008788          230 SQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDML--GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKK  306 (553)
Q Consensus       230 ~~~~~g~~-~~~~i~~~~~l~~~v~l~~~~~~~d~~--~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~  306 (553)
                      |+++||.. .++.||++++|+|+|+|++|.. .|+.  .|++++++++++|.|..   .|..|+.|+|||.+++ +  |+
T Consensus       129 p~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~-~~~~~~~d~gl~~~il~~G~G~~---~~~~gd~V~i~y~g~~-d--G~  201 (280)
T 1q1c_A          129 PEYAYGSAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRGEGYA---KPNEGAIVEVALEGYY-K--DK  201 (280)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-EECCTTCSSSEEEEEEECCSCSC---CCCTTCEEEEEEEEEE-T--TE
T ss_pred             cHHhCCCcCccCCCCCCCcEEEEEEeeeecc-cccccccccceeEEeeecccccc---cccCCceEEEEEEEEe-C--CE
Confidence            99999984 4568999999999999999976 4777  89999999999999974   2478999999999997 4  88


Q ss_pred             EEEeccCCCCCCCeEEEeCCCC---chhHHHHHHhcCCCCcEEEEEeCCCCcccCCCCCC-CCCCCCeEEEEEEEeeeec
Q 008788          307 VFYDTRVDNDGQPLEFSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK  382 (553)
Q Consensus       307 ~~~~s~~~~~~~~~~f~lG~~~---v~~g~e~~l~~M~~GE~~~~~~~~~~~yg~~g~~~-~ip~~~~l~~~ieL~~~~~  382 (553)
                      +|++       +|+.|.+|.+.   +|+||+.+|.+|++||++.|+|||+++||..+.+. .||++++++|+|+|+++..
T Consensus       202 ~fd~-------~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~~~IP~~~~l~f~V~L~~i~~  274 (280)
T 1q1c_A          202 LFDQ-------RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEK  274 (280)
T ss_dssp             EEEE-------EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEEC
T ss_pred             EEec-------CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCccCccCCCCeEEEEEEEEEEeC
Confidence            8843       37999999998   59999999999999999999999999999988765 5999999999999999998


Q ss_pred             CCCCC
Q 008788          383 PKDWT  387 (553)
Q Consensus       383 ~~~~~  387 (553)
                      +.+.|
T Consensus       275 ~~~~W  279 (280)
T 1q1c_A          275 AKESW  279 (280)
T ss_dssp             CCC--
T ss_pred             CCCCC
Confidence            87655

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=100.00  E-value=5e-39  Score=328.41  Aligned_cols=277  Identities=30%  Similarity=0.435  Sum_probs=206.1

Q ss_pred             CCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCC-CchhHHHHHHhcCCCCc
Q 008788          266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG-LVPEGFEMCVRLMLPGE  344 (553)
Q Consensus       266 dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~-~v~~g~e~~l~~M~~GE  344 (553)
                      ++++.|+++++|.|..|    ..|+.|+|||+|++.+ +|++|++|..  +++|++|.+|.+ .+|+||+.+|.+|++||
T Consensus        48 ~~~~~~~~~~~g~g~~~----~~gd~v~v~y~g~~~~-~g~~fd~~~~--~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge  120 (338)
T 2if4_A           48 DEKVSKQIIKEGHGSKP----SKYSTCFLHYRAWTKN-SQHKFEDTWH--EQQPIELVLGKEKKELAGLAIGVASMKSGE  120 (338)
T ss_dssp             ETTEEEEEEECCBSCCC----CTTCEEEEEEEEEETT-TCCCCEEHHH--HTCCEEEETTSCCGGGHHHHHHHHHCCBTC
T ss_pred             CCCeEEEEEeCCCCCCC----CCCCEEEEEEEEEEcC-CCcEeecccC--CCCCeEEEcCCCCcccHHHHHHHhcCCCCC
Confidence            46799999999999854    7899999999999875 4899866542  368999999999 89999999999999999


Q ss_pred             EEEEEeCCCCcccCCCC--CCCCCCCCeEEEEEEEeeeecCCC---CCCCChhhHHHHHHHHHhhhccccccCCHHHHHH
Q 008788          345 IALVTCPPDYAYDKFLR--PANVPEGAHIQWEIELLGFEKPKD---WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKA  419 (553)
Q Consensus       345 ~~~~~~~~~~~yg~~g~--~~~ip~~~~l~~~ieL~~~~~~~~---~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~  419 (553)
                      ++.|+||+.++||..+.  .+.||+++++.|.|+|+++....+   .+.++.++++..+..++..|+.+++.|+|.+|+.
T Consensus       121 ~~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~  200 (338)
T 2if4_A          121 RALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQ  200 (338)
T ss_dssp             EEEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHH
T ss_pred             eEEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            99999999999999987  367999999999999999887543   5678999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccC--CCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 008788          420 KYEKVLRDFNHVN--PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF  497 (553)
Q Consensus       420 ~Y~~Al~~l~~~~--~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~  497 (553)
                      .|++|+.......  .......+....+...+|+|+|.||+++++|++|+.+|++||+++|+++++||++|.+|..+|+|
T Consensus       201 ~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~  280 (338)
T 2if4_A          201 QYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQM  280 (338)
T ss_dssp             HHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            9999999432210  00111122334445579999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 008788          498 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSLGK  550 (553)
Q Consensus       498 ~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~~  550 (553)
                      ++|+.+|++|++++|++ ..++..|..+..+.+...++.++.|++||+..+.+
T Consensus       281 ~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          281 DSARDDFRKAQKYAPDD-KAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             HHHHHHHHHTTC-----------------------------------------
T ss_pred             HHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            99999999999999997 56888899998888888889999999999987754

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=100.00  E-value=7.4e-36  Score=304.66  Aligned_cols=275  Identities=29%  Similarity=0.469  Sum_probs=244.0

Q ss_pred             eeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCC---chhHHHHH
Q 008788          260 VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL---VPEGFEMC  336 (553)
Q Consensus       260 ~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~---v~~g~e~~  336 (553)
                      ..|++.|++|+|+|+++|.|..   +|..|+.|+|||+|++ +  |++|++ +      |++|.+|.|.   ++++|+.|
T Consensus        18 ~~~~~~~~~~~~~~~~~g~g~~---~p~~~~~v~v~y~g~~-~--g~~fd~-~------~~~f~lG~g~~~~~~~~~e~a   84 (336)
T 1p5q_A           18 GSHMEEDGGIIRRIQTRGEGYA---KPNEGAIVEVALEGYY-K--DKLFDQ-R------ELRFEIGEGENLDLPYGLERA   84 (336)
T ss_dssp             ----CCTTSEEEEEEECCCCSC---CCCTTCEEEEEEEEEE-T--TEEEEE-E------EEEEETTCGGGGTCCHHHHHH
T ss_pred             ceeecCCCcEEEEEEeCCCCCC---CCCCCCeEEEEEEEEE-C--CEEEec-C------CeEEEeCCCCccccchHHHHH
Confidence            4678899999999999999972   3578999999999998 4  888843 2      7999999987   58999999


Q ss_pred             HhcCCCCcEEEEEeCCCCcccCCCCCC-CCCCCCeEEEEEEEeeeecCCCCCCCChhhHHHHHHHHHhhhccccccCCHH
Q 008788          337 VRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFE  415 (553)
Q Consensus       337 l~~M~~GE~~~~~~~~~~~yg~~g~~~-~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~  415 (553)
                      +..|++||++.+.++|+++||..|... .||+++.+.|+++|.+++...+.+.+..+.....+..++..|+.+++.|+|+
T Consensus        85 l~~~~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~  164 (336)
T 1p5q_A           85 IQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYK  164 (336)
T ss_dssp             HTTCCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HhcCCCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence            999999999999999999999999775 5999999999999999999888888888888899999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 008788          416 LAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG  495 (553)
Q Consensus       416 ~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg  495 (553)
                      +|+..|++|++..........++..........+|+|+|.||+++++|.+|+.+|++||+++|+++++|+++|.+|..+|
T Consensus       165 ~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  244 (336)
T 1p5q_A          165 QALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN  244 (336)
T ss_dssp             HHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            99999999999543322222344555666778899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008788          496 EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSL  548 (553)
Q Consensus       496 ~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~  548 (553)
                      +|++|+.+|++|++++|++ ..+...+..+...+.+.+++++++|++||++.+
T Consensus       245 ~~~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  296 (336)
T 1p5q_A          245 DFELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLAREKKLYANMFERLA  296 (336)
T ss_dssp             CHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999997 568889999999999999999999999998754

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.92  E-value=3.1e-25  Score=226.19  Aligned_cols=275  Identities=15%  Similarity=0.145  Sum_probs=163.7

Q ss_pred             CCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCC-CcEEeecC-CCCceEEEcCCC-CccchHHHhhccCCcCcEEEEEE
Q 008788          152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGD-GKLILSHR-EGEPYFFTFGKS-EVPKGLEMGIGTMTREEKAVIYV  228 (553)
Q Consensus       152 d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~-g~~~~s~~-~~~p~~~~~g~~-~~~~g~~~~l~~mk~Ge~~~~~v  228 (553)
                      +.++.+.++++|.| ..|+.||.|+|||++++.+ |++|+++. .++|+.|.+|.+ ++++||+++|.+|++||++.|+|
T Consensus        48 ~~~~~~~~~~~g~g-~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~~i  126 (338)
T 2if4_A           48 DEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHV  126 (338)
T ss_dssp             ETTEEEEEEECCBS-CCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEEEE
T ss_pred             CCCeEEEEEeCCCC-CCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEEEE
Confidence            46899999999999 6899999999999999885 99999985 478999999999 99999999999999999999999


Q ss_pred             eCCccCCCCCC---CCCCCCceEEEEEEEeeeeeeeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCC
Q 008788          229 TSQYLTPSPLM---PVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEK  305 (553)
Q Consensus       229 ~~~~~~g~~~~---~~i~~~~~l~~~v~l~~~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g  305 (553)
                      ||+++||..+.   +.||++++++|+|+|+++....+                +....   .....-.+...-.+.. .|
T Consensus       127 ~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e----------------~~~~~---~~~~~~~~~~a~~~~~-~g  186 (338)
T 2if4_A          127 GWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE----------------GKARS---DMTVEERIGAADRRKM-DG  186 (338)
T ss_dssp             CGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCC----------------CBTTT---BCCHHHHHHHHHHHHH-HH
T ss_pred             CHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCcc----------------ccccc---cCCHHHHHHHHHHHHH-HH
Confidence            99999998653   78999999999999998854221                00000   0000000000000000 00


Q ss_pred             cEEEeccCCCCCCCeEEEeCCC-CchhHHHHHHhcCCCCcEEEEEeCCCCcccCCCCCCCCCCCCeEEEEEEEeeeecCC
Q 008788          306 KVFYDTRVDNDGQPLEFSSGEG-LVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPK  384 (553)
Q Consensus       306 ~~~~~s~~~~~~~~~~f~lG~~-~v~~g~e~~l~~M~~GE~~~~~~~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~  384 (553)
                      ..+             |..|+. .-+..++.++....           ...                .            
T Consensus       187 ~~~-------------~~~g~~~~A~~~y~~Al~~~p-----------~~~----------------~------------  214 (338)
T 2if4_A          187 NSL-------------FKEEKLEEAMQQYEMAIAYMG-----------DDF----------------M------------  214 (338)
T ss_dssp             HHT-------------CSSSCCHHHHHHHHHHHHHSC-----------HHH----------------H------------
T ss_pred             HHH-------------HhcCCHHHHHHHHHHHHHHhc-----------cch----------------h------------
Confidence            000             001110 12333444432210           000                0            


Q ss_pred             CCCCC-ChhhHHH--HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC
Q 008788          385 DWTGL-SFDGIMD--EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG  461 (553)
Q Consensus       385 ~~~~~-~~~e~~~--~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~  461 (553)
                       +..+ ...+...  ....+.+.|..+++.++|.+|+..|++||+    ++|.+           ..+|+++|.||+.++
T Consensus       215 -~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~a~~~~g  278 (338)
T 2if4_A          215 -FQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT----EEEKN-----------PKALFRRGKAKAELG  278 (338)
T ss_dssp             -HTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTTT
T ss_pred             -hhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcC
Confidence             0000 0001111  123677899999999999999999999999    67766           678999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          462 ECRKSIEACNKVLDANPAHVKGLYRRGMAY-MALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       462 ~~~~A~~~~~~al~~dp~n~ka~~r~g~a~-~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      +|++|+.++.++++++|++..++..++.+. ...+.++.|.+.|++++.++|++.
T Consensus       279 ~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          279 QMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             CHHHHHHHHHHTTC-----------------------------------------
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence            999999999999999999999999999984 456788899999999999999864

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.92  E-value=1.1e-24  Score=192.73  Aligned_cols=136  Identities=28%  Similarity=0.484  Sum_probs=108.3

Q ss_pred             CCCCCCCCCCCCCCCCC--hhhhhcccc--CCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCC
Q 008788            1 MAVEDEDINPQKKKAPS--EDDKRRMKI--VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKG   76 (553)
Q Consensus         1 ~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~   76 (553)
                      |||...+.-+...-.+.  -..+..+..  .++|++|+++++|+|...|+.||.|.|||++++.||++|++++.    ++
T Consensus         3 ~~mt~~~~~~~~~~~~~~~~~~~~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~----~~   78 (144)
T 3o5e_A            3 MAMTTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD----RN   78 (144)
T ss_dssp             --------------CTTHHHHHHCEECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGG----GT
T ss_pred             ccccccccccccccccccccccccccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecc----cC
Confidence            56666555544332221  222223333  79999999999999986699999999999999999999999987    67


Q ss_pred             cceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 008788           77 IPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (553)
Q Consensus        77 ~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~  144 (553)
                      .|+.|.+|.+++++||+.+|.+|++|+++.|+|||++|||..+.+    +.|||+++|+|+|+|++|.
T Consensus        79 ~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ipp~~aYG~~g~~----~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A           79 EPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSL----PKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             SCEEEETTSSSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred             CCeEEEeCCCcccHHHHHHHhCCCCCCEEEEEEChHHCcCCCCCC----CCcCCCCeEEEEEEEEEec
Confidence            899999999999999999999999999999999999999999876    6899999999999999985

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.91  E-value=8.7e-24  Score=181.26  Aligned_cols=114  Identities=26%  Similarity=0.492  Sum_probs=102.4

Q ss_pred             CCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccC---CCCCcceEEEcCCCccchhHHhhcCCCCCCc
Q 008788           27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEY---GGKGIPIRHVLGKSKILLGLLEGIPTMLKGE  103 (553)
Q Consensus        27 ~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~---~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~  103 (553)
                      .|+|++|+|+++|+|...|+.||.|.+||++++.||++|++|+...   +..+.|+.|.+|.+++++||+++|.+|++|+
T Consensus         2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   81 (119)
T 3kz7_A            2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE   81 (119)
T ss_dssp             CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred             CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCC
Confidence            5899999999999998669999999999999999999999998510   0124799999999999999999999999999


Q ss_pred             EEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788          104 VSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       104 ~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~  143 (553)
                      ++.|.|||++|||..+.+   +..|||+++|+|+|+|+++
T Consensus        82 ~~~v~ip~~~aYG~~g~~---~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           82 KARLEIEPEWAYGKKGQP---DAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEEEECGGGTTCTTCBG---GGTBCTTCCEEEEEEEEEE
T ss_pred             EEEEEECcHHhcCCCCCC---CCccCcCCeEEEEEEEEEe
Confidence            999999999999999875   1379999999999999987

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.91  E-value=1e-23  Score=182.85  Aligned_cols=112  Identities=31%  Similarity=0.527  Sum_probs=105.5

Q ss_pred             ccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcE
Q 008788           25 KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEV  104 (553)
Q Consensus        25 ~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~  104 (553)
                      ...++|++|+++++|+|...|+.||.|.+||++++.||++|++|+.    ++.|+.|.+|.+++++||+++|.+|++|++
T Consensus        15 ~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~   90 (128)
T 3o5q_A           15 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATMKKGEI   90 (128)
T ss_dssp             SSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTSSSSCHHHHHHHTTCCTTCE
T ss_pred             ccCCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEECCCCccHHHHHHHhcCCCCCE
Confidence            3478999999999999986699999999999999999999999987    678999999999999999999999999999


Q ss_pred             EEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 008788          105 SMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (553)
Q Consensus       105 ~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~  144 (553)
                      ++|.|||++|||..+.+    +.|||+++|+|+|+|+++.
T Consensus        91 ~~v~ip~~~aYG~~g~~----~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           91 CHLLCKPEYAYGSAGSL----PKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             EEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred             EEEEEChHHcCCCCCCC----CCcCCCCEEEEEEEEEEec
Confidence            99999999999999875    6899999999999999985

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.91  E-value=1.2e-23  Score=178.56  Aligned_cols=111  Identities=25%  Similarity=0.518  Sum_probs=103.9

Q ss_pred             ccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcE
Q 008788           25 KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEV  104 (553)
Q Consensus        25 ~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~  104 (553)
                      ..+++|++|+++++|+|...|+.||.|.+||++++.||++|++++.    ++.|+.|.+|.+++++||+++|.+|++|++
T Consensus         2 ~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~----~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~   77 (113)
T 1yat_A            2 EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVD----RGSPFQCNIGVGQVIKGWDVGIPKLSVGEK   77 (113)
T ss_dssp             EECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTT----TTCCEEEETTSSSSCHHHHHHGGGCCTTCE
T ss_pred             CCCCCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCC----CCCcEEEEeCCCCccHHHHHHHhCCCCCCE
Confidence            4568999999999999987689999999999999989999999986    568999999999999999999999999999


Q ss_pred             EEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788          105 SMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       105 ~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~  143 (553)
                      ++|.|||+++||..+.+    +.||+|++++|+|+|+++
T Consensus        78 ~~v~ip~~~ayG~~~~~----~~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           78 ARLTIPGPYAYGPRGFP----GLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             EEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEE
T ss_pred             EEEEECHHHCcCCCCCC----CCcCCCCeEEEEEEEEEe
Confidence            99999999999998875    579999999999999987

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.90  E-value=1.2e-23  Score=183.92  Aligned_cols=114  Identities=28%  Similarity=0.553  Sum_probs=105.0

Q ss_pred             CCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEE
Q 008788           27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM  106 (553)
Q Consensus        27 ~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~  106 (553)
                      +++|++|+++++|+|...|+.||.|++||++++.||++|++++.    ++.|+.|.+|.+++++||+++|.+|++|++++
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~   87 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRD----RGDQFSFNLGRGNVIKGWDLGVATMTKGEVAE   87 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTTTSSCHHHHHHHTTCCBTCEEE
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCc----CCCCEEEEeCCCCccHHHHHHHhcCCCCCEEE
Confidence            78999999999999985599999999999999889999999986    56899999999999999999999999999999


Q ss_pred             EEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeecccc
Q 008788          107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKI  148 (553)
Q Consensus       107 ~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~~~  148 (553)
                      |+|||++|||..+.+    +.||++++++|+|+|+++...+.
T Consensus        88 v~ip~~~aYG~~g~~----~~Ip~~~~l~f~v~l~~i~~~~l  125 (135)
T 1r9h_A           88 FTIRSDYGYGDAGSP----PKIPGGATLIFEVELFEWSAEDI  125 (135)
T ss_dssp             EEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEEC---
T ss_pred             EEEChHHcCCCCCCC----CCcCcCCcEEEEEEEEEeecCCc
Confidence            999999999998875    68999999999999999976543

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.90  E-value=3.4e-23  Score=180.29  Aligned_cols=112  Identities=27%  Similarity=0.462  Sum_probs=104.6

Q ss_pred             ccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCC
Q 008788           23 RMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKG  102 (553)
Q Consensus        23 ~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G  102 (553)
                      .....++|++|+++++|+|.. |+.||.|++||++++.||++|+++++    ++.|+.|.+|.+++++||+++|.+|++|
T Consensus        22 ~~~~~~~gl~~~~l~~G~G~~-~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~vi~G~eeaL~gmk~G   96 (133)
T 2y78_A           22 TVVTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVG   96 (133)
T ss_dssp             CCEECTTSCEEEEEECCSSCB-CCTTSEEEEEEEEEETTSCEEEETTT----TTCCEEEETTSSSSCHHHHHHSTTCBTT
T ss_pred             CcEECCCCEEEEEEEcCCCCC-CCCCCEEEEEEEEEECCCCEEeccCc----CCCCEEEEeCCCChhHHHHHHHcCCCCC
Confidence            456789999999999999986 89999999999999989999999986    6789999999999999999999999999


Q ss_pred             cEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788          103 EVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       103 ~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~  143 (553)
                      ++++|.|||+++||..+.+    ..||||++++|+|+|+++
T Consensus        97 e~~~v~ip~~~aYG~~~~~----~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A           97 GVRRLTIPPQLGYGARGAG----GVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             CEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEC
T ss_pred             CEEEEEECcHHhCCCCCCC----CCCCCCCeEEEEEEEEEC
Confidence            9999999999999998875    579999999999999875

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.90  E-value=2e-23  Score=191.15  Aligned_cols=134  Identities=25%  Similarity=0.384  Sum_probs=113.0

Q ss_pred             CCCCCCCCCCChhhhhccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEec-CCcEEEeccccCCCCCcceEEEcCC
Q 008788            7 DINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGK   85 (553)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~-~g~~~~st~~~~~~~~~p~~~~~G~   85 (553)
                      ...|.++.+++.+......++++||+|+++++|+|.. |+.||.|+|||++++. ||++|++|+.    ++.|+.|.+|.
T Consensus        27 ~~~~~~~~~~p~~~~~~~~~~~~gl~~~vl~~G~G~~-~~~Gd~V~v~Y~g~l~~dG~~fdss~~----~~~p~~f~lG~  101 (180)
T 2f4e_A           27 HSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSK-PSKYSTCFLHYRAWTKNSQHKFEDTWH----EQQPIELVLGK  101 (180)
T ss_dssp             -------CCSCCCCCSCCEEEETTEEEEEEECCBSCC-BCTTCEEEEEEEEEETTTCCEEEETTT----TTCCEEEETTS
T ss_pred             ccCCCCcccCCcccCCCcEECCCceEEEEEeCCCCCC-CCCCCEEEEEEEEEECCCCcEEeccCc----cCCCEEEEeCC
Confidence            3344444455555566678889999999999999986 9999999999999987 5999999987    67899999999


Q ss_pred             C-ccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeeccc
Q 008788           86 S-KILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK  147 (553)
Q Consensus        86 ~-~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~~  147 (553)
                      + ++++||+.+|.+|++|+++.|+|||+++||..+.+.  ++.||++++|+|+|+|+++..+.
T Consensus       102 g~~vi~G~eeaL~gMk~Ge~~~v~iPp~~aYG~~g~~~--~~~Ip~~s~l~F~VeL~~v~~~~  162 (180)
T 2f4e_A          102 EKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFS--FPNVPPMADLLYEVEVIGFDETK  162 (180)
T ss_dssp             CCGGGHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBSS--SSCBCTTCCEEEEEEEEEESCBC
T ss_pred             CCchhHHHHHHHhCCCCCCEEEEEECchHhCCcCCccc--CCCcCCCCeEEEEEEEEEEecCc
Confidence            9 999999999999999999999999999999988631  15799999999999999997654

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.90  E-value=3.8e-23  Score=173.77  Aligned_cols=106  Identities=26%  Similarity=0.558  Sum_probs=100.0

Q ss_pred             ceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEE
Q 008788           30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM  109 (553)
Q Consensus        30 g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~i  109 (553)
                      ||+|+++++|+|...|+.||.|.+||++++.||++|++++.    ++.|+.|.+|.+++++||+++|.+|++|++++|.|
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~----~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~i   76 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTI   76 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEE
Confidence            78999999999987689999999999999989999999986    56899999999999999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788          110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       110 p~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~  143 (553)
                      ||+++||..+.+    +.||++++++|+|+|+++
T Consensus        77 p~~~ayG~~~~~----~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           77 SPDYAYGATGHP----GIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             CGGGTTTTTCBT----TTBCTTCCEEEEEEEEEE
T ss_pred             CHHHccCCCCCC----CCcCCCCeEEEEEEEEEe
Confidence            999999998875    679999999999999987

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.89  E-value=4.5e-23  Score=178.90  Aligned_cols=114  Identities=32%  Similarity=0.549  Sum_probs=105.5

Q ss_pred             hccccCCCceEEE--EEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCC
Q 008788           22 RRMKIVPGSLMKA--VMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM   99 (553)
Q Consensus        22 ~~~~~~~~g~~~~--i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m   99 (553)
                      .....+++|++|+  ++++|+|...|+.||.|.++|++++.||++|++++.    ++.|+.|.+|.+++++||+++|.+|
T Consensus        15 ~~~~~~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~vi~G~e~aL~gm   90 (130)
T 2lgo_A           15 QTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRS----RGKPFQFTLGAGEVIKGWDQGVATM   90 (130)
T ss_dssp             SSCSSSSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTT----TTCCEEEETTSTTSCHHHHHHHHHS
T ss_pred             ccceeCCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCc----CCCCEEEEeCCCCccHHHHHHHhCC
Confidence            4456679999999  999999997689999999999999889999999986    6689999999999999999999999


Q ss_pred             CCCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788          100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       100 ~~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~  143 (553)
                      ++|++++|.|||+++||..+.+    +.|||+++++|+|+|+++
T Consensus        91 ~~Ge~~~v~ip~~~aYG~~~~~----~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           91 TLGEKALFTIPYQLAYGERGYP----PVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             CTTEEEEEEECTTTSTTTTCCS----TTSCSSCCEEEEEEEEEC
T ss_pred             CCCCEEEEEECcHHHCCCCCCC----CCcCCCCeEEEEEEEEEC
Confidence            9999999999999999998875    679999999999999875

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.89  E-value=6.6e-23  Score=184.74  Aligned_cols=115  Identities=23%  Similarity=0.398  Sum_probs=106.5

Q ss_pred             hccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCC
Q 008788           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (553)
Q Consensus        22 ~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~  101 (553)
                      ....++++||+|+++++|+|...|..||.|.|||++++.||++|++++.    ++.|+.|.+  +++|+||+++|.+|++
T Consensus        30 ~~~~~~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~dG~~fdss~~----~g~p~~f~l--g~vI~G~eeaL~gMk~  103 (167)
T 1jvw_A           30 PDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE----RGKPTTFRP--NEVIKGWTEALQLMRE  103 (167)
T ss_dssp             TTEEECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHH----HTSCEEECG--GGSCHHHHHHHTTCCT
T ss_pred             CCcEECCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECCCCEEeeccc----cCCCEEEEe--CchhHHHHHHHcCCCC
Confidence            4677899999999999999987689999999999999889999999987    678999999  5899999999999999


Q ss_pred             CcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeecc
Q 008788          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA  146 (553)
Q Consensus       102 G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~  146 (553)
                      |++++|+|||++|||..+.+    +.||||++|+|+|+|+++.+.
T Consensus       104 Ge~~~~~Ip~~laYG~~g~~----~~Ipp~s~LiF~VeL~~i~~~  144 (167)
T 1jvw_A          104 GDRWRLFIPYDLAYGVTGGG----GMIPPYSPLEFDVELISIKDG  144 (167)
T ss_dssp             TCEEEEEECGGGTTTTTCSS----SSSCTTCCEEEEEEEEEEGGG
T ss_pred             CCEEEEEECchhhCCCCCCC----CCcCCCCeEEEEEEEEEEEcC
Confidence            99999999999999998875    679999999999999999753

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.89  E-value=1.7e-22  Score=174.63  Aligned_cols=116  Identities=23%  Similarity=0.357  Sum_probs=104.5

Q ss_pred             hccccCCCceEEEEEecCC--CCCCCCCCCEEEEEEEEEec-CCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCC
Q 008788           22 RRMKIVPGSLMKAVMRPGG--GDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT   98 (553)
Q Consensus        22 ~~~~~~~~g~~~~i~~~G~--g~~~~~~gd~V~v~y~~~~~-~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~   98 (553)
                      ....+.++|++|+++++|+  |.. |+.||.|.+||++++. ||++|++|+..  +.+.|+.|.+|.+++++||+++|.+
T Consensus         5 ~~~~~~~~gl~~~~l~~g~~~g~~-~~~gd~V~v~Y~g~~~~dG~~fdss~~~--~~~~p~~f~lG~~~~i~G~e~~l~g   81 (125)
T 4dip_A            5 MGALIPEPEVKIEVLQKPFICHRK-TKGGDLMLVHYEGYLEKDGSLFHSTHKH--NNGQPIWFTLGILEALKGWDQGLKG   81 (125)
T ss_dssp             CGGGCCCCCCEEEEEECCSCCSCC-CCTTCEEEEEEEEEETTTCCEEEEHHHH--TTTCCEEEETTSCSSCHHHHHHSTT
T ss_pred             CceEECCCCeEEEEEEcCCCCCCc-CCCCCEEEEEEEEEECCCCcEEEEcccC--CCCcCEEEEeCCCChhHHHHHHHhC
Confidence            3456789999999999998  555 9999999999999998 99999999841  1358999999999999999999999


Q ss_pred             CCCCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeec
Q 008788           99 MLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK  145 (553)
Q Consensus        99 m~~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~  145 (553)
                      |++|+++.|.|||++|||..+.     +.||++++|+|+|+|+++.+
T Consensus        82 m~~Ge~~~~~ip~~~aYG~~g~-----~~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           82 MCVGEKRKLIIPPALGYGKEGK-----GKIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             CCTTCEEEEEECGGGTTTTTCB-----TTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCCCEEEEEEChHHhcCCCCC-----CCCCCCCeEEEEEEEEEEEc
Confidence            9999999999999999999885     47999999999999999864

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.89  E-value=2.6e-23  Score=181.65  Aligned_cols=116  Identities=27%  Similarity=0.403  Sum_probs=100.0

Q ss_pred             hhhccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEec-CCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCC
Q 008788           20 DKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT   98 (553)
Q Consensus        20 ~~~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~-~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~   98 (553)
                      ......++++||+|+++++|+|.. ++.||.|.+||++++. +|++|++++.    ++.|+.|.+|.+++++||+++|.+
T Consensus        17 ~~~~~v~~~~gl~~~vl~~G~g~~-~~~gd~V~v~Y~g~l~~~G~~fdss~~----~~~p~~f~lG~g~~i~G~e~aL~g   91 (134)
T 3b7x_A           17 QRMLDISGDRGVLKDVIREGAGDL-VAPDASVLVKYSGYLEHMDRPFDSNYF----RKTPRLMKLGEDITLWGMELGLLS   91 (134)
T ss_dssp             TTCEESSSSSSEEEEEEECCEEEE-CCTTCEEEEEEEEECTTCSSCSEEC-----------CEEC-CCCCCHHHHHHHHT
T ss_pred             cccceeeCCCCEEEEEEEcCCCCC-CCCCCEEEEEEEEEECCCCeEEEecCC----CCCCEEEEcCCcchhHHHHHHHhC
Confidence            344566789999999999999997 7899999999999987 6999999986    678999999999999999999999


Q ss_pred             CCCCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 008788           99 MLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (553)
Q Consensus        99 m~~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~  144 (553)
                      |++|++++|+|||++|||..+.+    +.||||++++|+|+|+++.
T Consensus        92 m~~Ge~~~v~ip~~~aYG~~~~~----~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           92 MRRGELARFLFKPNYAYGTLGCP----PLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             CEETCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEC
T ss_pred             CCCCCEEEEEECHHHCcCCCCCC----CCcCcCCeEEEEEEEEEEe
Confidence            99999999999999999998875    5699999999999999984

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.89  E-value=4.5e-23  Score=179.07  Aligned_cols=121  Identities=22%  Similarity=0.409  Sum_probs=105.7

Q ss_pred             hhhhhccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcC
Q 008788           18 EDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIP   97 (553)
Q Consensus        18 ~~~~~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~   97 (553)
                      |+.......+++||+|+++++|+|.. |+.||.|++||++++.||++|++|+.    ++.|+.|.+|.+++++||+++|.
T Consensus         1 ~~~~~~~~~~~~Gl~~~~l~~G~G~~-~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~~~~i~G~~~~L~   75 (129)
T 1u79_A            1 ETTSCEFSVSPSGLAFCDKVVGYGPE-AVKGQLIKAHYVGKLENGKVFDSSYN----RGKPLTFRIGVGEVIKGWDQGIL   75 (129)
T ss_dssp             ----CCCEECTTSCEEEEEECCSSCB-CCTTCEEEEEEEEECTTSCEEEEHHH----HTSCEEEETTSSSSCHHHHHHHH
T ss_pred             CCCCCccEECCCCeEEEEEEcCCCCC-CCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEeCCCCccHHHHHHhc
Confidence            34566778899999999999999987 89999999999999889999999986    56899999999999999999999


Q ss_pred             C------CCCCcEEEEEEcCCCccCCCCCCCC-CCCCCCCCCeEEEEEEEEee
Q 008788           98 T------MLKGEVSMFKMKPQMHYGEDDCPVA-APSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus        98 ~------m~~G~~~~~~ip~~~a~g~~~~~~~-~~~~i~~~~~l~~~v~l~~~  143 (553)
                      +      |++|++++|.|||+++||..+.+.. .+..||||++++|+|+|+++
T Consensus        76 G~~~~~~m~~Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           76 GSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             CBTTBCCCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             ccccccccCCCCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            8      9999999999999999999875210 01369999999999999986

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.88  E-value=1.5e-22  Score=206.12  Aligned_cols=267  Identities=15%  Similarity=0.190  Sum_probs=197.9

Q ss_pred             ccCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCC---ccchHHHhhccCCcCcEEE
Q 008788          149 IADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSE---VPKGLEMGIGTMTREEKAV  225 (553)
Q Consensus       149 ~~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~---~~~g~~~~l~~mk~Ge~~~  225 (553)
                      +..|.++.+.++++|+|..+|..|+.|+|||++++ +|++|+++    |+.|.+|.|.   ++++|+++|.+|++||++.
T Consensus        21 ~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~----~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~   95 (336)
T 1p5q_A           21 MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSI   95 (336)
T ss_dssp             -CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEE
T ss_pred             ecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC----CeEEEeCCCCccccchHHHHHHhcCCCCCeEE
Confidence            34688999999999999778999999999999988 99999986    9999999887   5899999999999999999


Q ss_pred             EEEeCCccCCCCCCC--CCCCCceEEEEEEEeeeeeeeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecC
Q 008788          226 IYVTSQYLTPSPLMP--VVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNE  303 (553)
Q Consensus       226 ~~v~~~~~~g~~~~~--~i~~~~~l~~~v~l~~~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~  303 (553)
                      +.|+|+++||..+..  .||+++++.|++.|.++.+..+.+...      +.    ..|    .   ....+      ..
T Consensus        96 l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a------~~----~~p----~---~a~~~------~~  152 (336)
T 1p5q_A           96 VYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMN------SE----EKL----E---QSTIV------KE  152 (336)
T ss_dssp             EEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCC------HH----HHH----H---HHHHH------HH
T ss_pred             EEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCC------HH----HHH----H---HHHHH------HH
Confidence            999999999986544  689999999999999996543322100      00    000    0   00000      00


Q ss_pred             CCcEEEeccCCCCCCCeEEEeCC-CCchhHHHHHHhcCCCCcEEEEEeCCCCcccCCCCCCCCCCCCeEEEEEEEeeeec
Q 008788          304 EKKVFYDTRVDNDGQPLEFSSGE-GLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK  382 (553)
Q Consensus       304 ~g~~~~~s~~~~~~~~~~f~lG~-~~v~~g~e~~l~~M~~GE~~~~~~~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~  382 (553)
                      -|...             +..|+ ..-+..++.++....           ..              ..+         . 
T Consensus       153 ~g~~~-------------~~~g~~~~A~~~y~~Al~~~p-----------~~--------------~~~---------~-  184 (336)
T 1p5q_A          153 RGTVY-------------FKEGKYKQALLQYKKIVSWLE-----------YE--------------SSF---------S-  184 (336)
T ss_dssp             HHHHH-------------HHHTCHHHHHHHHHHHHHHTT-----------TC--------------CCC---------C-
T ss_pred             HHHHH-------------HHCCCHHHHHHHHHHHHHHhh-----------cc--------------ccC---------C-
Confidence            01100             11111 113444555553321           10              000         0 


Q ss_pred             CCCCCCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC
Q 008788          383 PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE  462 (553)
Q Consensus       383 ~~~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~  462 (553)
                          .....+.....+..+.+.|..+++.|+|++|+..|++|++    ++|.+           ..+++++|.||+.+++
T Consensus       185 ----~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~  245 (336)
T 1p5q_A          185 ----NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE----LDSNN-----------EKGLSRRGEAHLAVND  245 (336)
T ss_dssp             ----SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTC
T ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHCCC
Confidence                0000111122467788999999999999999999999999    67766           6789999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 008788          463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA-QRDFEMMMKV  510 (553)
Q Consensus       463 ~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A-~~~l~~al~l  510 (553)
                      |++|+.++++|++++|++..+++.++.++..++++++| ...|++++..
T Consensus       246 ~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          246 FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999 5567766643

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.88  E-value=3.8e-22  Score=173.40  Aligned_cols=116  Identities=22%  Similarity=0.534  Sum_probs=101.3

Q ss_pred             hccccCCCce-EEEEEecC-CC-CCCCCCCCEEEEEEEEEe-cCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcC
Q 008788           22 RRMKIVPGSL-MKAVMRPG-GG-DSTPSDGDQVAYHCTVRT-LDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIP   97 (553)
Q Consensus        22 ~~~~~~~~g~-~~~i~~~G-~g-~~~~~~gd~V~v~y~~~~-~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~   97 (553)
                      ....++++|+ +++++++| .| ...|+.||.|.+||++++ .||++|++|+.    ++.|+.|.+|.+++++||+++|.
T Consensus         8 ~~~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~----~~~p~~f~lG~g~~i~g~e~~l~   83 (129)
T 2vn1_A            8 EKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD----RNVPFKFHLEQGEVIKGWDICVS   83 (129)
T ss_dssp             EEEECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGG----TTCCEEEETTSSSSCHHHHHHHT
T ss_pred             CCcEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCC----CCccEEEEeCCCCcCHHHHHHHh
Confidence            3445555554 55799977 55 234899999999999998 79999999987    67899999999999999999999


Q ss_pred             CCCCCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeec
Q 008788           98 TMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK  145 (553)
Q Consensus        98 ~m~~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~  145 (553)
                      +|++|+++.|.|||+++||..+.+    +.||||++++|+|+|+++..
T Consensus        84 gm~~Ge~~~v~ip~~~aYG~~~~~----~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           84 SMRKNEKCLVRIESMYGYGDEGCG----ESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             TCCTTCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCCCCEEEEEEChHHcCCCCCCC----CCcCCCCeEEEEEEEEEEec
Confidence            999999999999999999998875    67999999999999999965

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.88  E-value=6e-23  Score=183.18  Aligned_cols=120  Identities=21%  Similarity=0.331  Sum_probs=99.5

Q ss_pred             ccCCCceEEEEEecCCCCC-CCCCCCEEEEEEEEEecC--CcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCC
Q 008788           25 KIVPGSLMKAVMRPGGGDS-TPSDGDQVAYHCTVRTLD--GVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (553)
Q Consensus        25 ~~~~~g~~~~i~~~G~g~~-~~~~gd~V~v~y~~~~~~--g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~  101 (553)
                      +++++||+|+|+++|+|+. .+.+||.|++||++++.|  |++||||++    ++.|+.|.+|.+++|+||+++|.+|++
T Consensus         6 ~~~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~----rg~P~~f~lG~g~vI~Gwd~gl~~M~~   81 (165)
T 2lkn_A            6 RLREDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRA----RGKPMELIIGKKFKLPVWETIVCTMRE   81 (165)
T ss_dssp             HHHTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTT----TTCCEEEESSSSCSCSHHHHHHTTCCT
T ss_pred             cccCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEeccc----CCCCEEEEecCCCccHHHHHHHhcCcc
Confidence            5678999999999999985 246899999999999954  999999998    889999999999999999999999999


Q ss_pred             CcEEEEEEcCCCccCCC-------CCC-CCCCC-------------------------CCCCCCeEEEEEEEEeeecccc
Q 008788          102 GEVSMFKMKPQMHYGED-------DCP-VAAPS-------------------------TFPKDEELHFEIEMIDFAKAKI  148 (553)
Q Consensus       102 G~~~~~~ip~~~a~g~~-------~~~-~~~~~-------------------------~i~~~~~l~~~v~l~~~~~~~~  148 (553)
                      |++++|+|||++|||..       ..+ ...|.                         -|+++++|+|+|||++|..+..
T Consensus        82 Ge~~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~e  161 (165)
T 2lkn_A           82 GEIAQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGT  161 (165)
T ss_dssp             TCEEEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTT
T ss_pred             CceEEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCcc
Confidence            99999999999999920       000 00000                         0344578999999999976543

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.88  E-value=4e-22  Score=186.89  Aligned_cols=111  Identities=27%  Similarity=0.472  Sum_probs=105.1

Q ss_pred             cccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCc
Q 008788           24 MKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGE  103 (553)
Q Consensus        24 ~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~  103 (553)
                      ..++++|++|+++++|+|.. |+.||.|.+||++++.||++|++++.    ++.|+.|.+|.+++++||+++|.+|++|+
T Consensus        99 ~~~~~sGl~~~vl~~G~G~~-~~~gd~V~v~Y~g~l~dG~~fdss~~----~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge  173 (209)
T 3uf8_A           99 VVTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGG  173 (209)
T ss_dssp             CEECTTSCEEEEEECCCSCB-CCTTCEEEEEEEEEETTSCEEEESGG----GTCCEEEETTSSSSCHHHHHHHTTCBTTC
T ss_pred             ccCCCCceEEEEEEcCCCCc-CCCCCEEEEEEEEEECCCCEEEEccc----cCCCEEEEeCCCccchhHHHHHhCCCCCC
Confidence            56689999999999999998 99999999999999999999999987    68899999999999999999999999999


Q ss_pred             EEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788          104 VSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       104 ~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~  143 (553)
                      +++|.|||++|||..+.+    +.|||+++|+|+|+|+++
T Consensus       174 ~~~v~Ipp~~aYG~~g~~----~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          174 VRRLTIPPQLGYGARGAA----GVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             EEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEC
T ss_pred             EEEEEECcHHhCCCCCCC----CCcCCCCeEEEEEEEEEC
Confidence            999999999999999875    569999999999999975

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.88  E-value=4.6e-22  Score=173.94  Aligned_cols=120  Identities=32%  Similarity=0.495  Sum_probs=101.8

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (553)
Q Consensus       151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~  229 (553)
                      .+.++.++++++|.|...|+.||.|+|||++++.||++|+++.. ++|+.|.+|.+++++||+++|.+|++||+++|+||
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip   91 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR   91 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence            67899999999999966799999999999999999999999863 68999999999999999999999999999999999


Q ss_pred             CCccCCCC-CCCCCCCCceEEEEEEEeeeeeeeecc--CCCceEE
Q 008788          230 SQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDML--GDGRLIK  271 (553)
Q Consensus       230 ~~~~~g~~-~~~~i~~~~~l~~~v~l~~~~~~~d~~--~dg~l~k  271 (553)
                      |+++||+. .++.||++++|+|+|+|+++.. .|+.  +||+|+|
T Consensus        92 ~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~-~~l~~~~d~~v~k  135 (135)
T 1r9h_A           92 SDYGYGDAGSPPKIPGGATLIFEVELFEWSA-EDISPDRDGTILR  135 (135)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC--------------
T ss_pred             hHHcCCCCCCCCCcCcCCcEEEEEEEEEeec-CCcCcCCCCcccC
Confidence            99999985 4478999999999999999976 4777  8888876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.88  E-value=3.6e-22  Score=180.50  Aligned_cols=155  Identities=21%  Similarity=0.355  Sum_probs=130.0

Q ss_pred             hhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc----CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 008788          391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  466 (553)
Q Consensus       391 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~----~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A  466 (553)
                      .+++++.+..+++.|+.+|+.|+|.+|+..|.+|+..+...    .|.+ +++.........+|+|+|.||+++++|.+|
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~~~~~~A   82 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGE-PEWVELDRKNIPLYANMSQCYLNIGDLHEA   82 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTS-HHHHHHHHTHHHHHHHHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            35678899999999999999999999999999999976542    2333 344455666788999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008788          467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTR  546 (553)
Q Consensus       467 ~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~  546 (553)
                      +.+|++||+++|+++++||++|.+|..+|+|++|+.+|++|++++|++...++..|..|..++++.+++++++|++||+.
T Consensus        83 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  162 (162)
T 3rkv_A           83 EETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQP  162 (162)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC--------
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999854789999999999999999999999999963

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.88  E-value=3.8e-22  Score=186.70  Aligned_cols=113  Identities=26%  Similarity=0.439  Sum_probs=105.0

Q ss_pred             hccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCC
Q 008788           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (553)
Q Consensus        22 ~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~  101 (553)
                      ....++++|++|+++++|+|.. |..||.|+|||++++.||++|++++.    ++.|+.|.+  +++|+||+++|.+|++
T Consensus        99 ~~v~~~~sGl~y~vl~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~----~g~p~~f~l--g~vI~G~eeaL~gMk~  171 (213)
T 1fd9_A           99 PGVVVLPSGLQYKVINSGNGVK-PGKSDTVTVEYTGRLIDGTVFDSTEK----TGKPATFQV--SQVIPGWTEALQLMPA  171 (213)
T ss_dssp             TTEEECTTSCEEEEEECCCSCC-CCTTCEEEEEEEEEETTSCEEEEHHH----HCSCEEEEG--GGSCHHHHHHHTTCCT
T ss_pred             CCcEECCCccEEEEEecCCCcc-CCCCCEEEEEEEEEECCCCEEeeccc----cCCCEEEEc--CchhhHHHHHHcCCCC
Confidence            3567889999999999999987 99999999999999999999999987    678999999  5899999999999999


Q ss_pred             CcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeec
Q 008788          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK  145 (553)
Q Consensus       102 G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~  145 (553)
                      |++++|+|||+++||..+.+    +.|||+++++|+|+|+++.+
T Consensus       172 Gek~~v~IP~~laYG~~g~~----~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          172 GSTWEIYVPSGLAYGPRSVG----GPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             TCEEEEEECGGGTTTTCCCS----SSCCTTCCEEEEEEEEEEEC
T ss_pred             CCEEEEEECchhccCccCCC----CCCCCCCeEEEEEEEEEEEc
Confidence            99999999999999998864    67999999999999999864

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.87  E-value=4.1e-22  Score=186.12  Aligned_cols=109  Identities=21%  Similarity=0.353  Sum_probs=101.3

Q ss_pred             hccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCC
Q 008788           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (553)
Q Consensus        22 ~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~  101 (553)
                      ....++++||+|+++++|+|.. |..||.|.|||++++.||++|+|| .      .|+.|.+|  ++|+||+++|.+|++
T Consensus       110 ~gv~~~~sGl~y~vl~~G~G~~-p~~gd~V~V~Y~g~l~dG~vfDss-~------~P~~f~lG--~vI~G~eeaL~gMk~  179 (219)
T 3oe2_A          110 PGVKELADGILMTELTPGTGPK-PDANGRVEVRYVGRLPDGKIFDQS-T------QPQWFRLD--SVISGWTSALQNMPT  179 (219)
T ss_dssp             TTCEECGGGCEEEEEECCCSCC-CCTTSEEEEEEEEECTTSCEEEEC-S------SCEEEEGG--GSCHHHHHHHTTCCT
T ss_pred             CCcEECCCCeEEEEEecCCCcc-CCCCCEEEEEEEEEECCCCEeecc-C------CcEEEEec--chhHHHHHHHhCCCC
Confidence            4467889999999999999987 999999999999999999999988 3      59999996  899999999999999


Q ss_pred             CcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 008788          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (553)
Q Consensus       102 G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~  144 (553)
                      |++++|+|||++|||..+.+    +.|||+++|+|+|+|++|.
T Consensus       180 Gek~~v~IPp~lAYG~~g~~----~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          180 GAKWRLVIPSDQAYGAEGAG----DLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             TCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred             CCEEEEEECchhcCCCCCCC----CCCCCCCeEEEEEEEEEEe
Confidence            99999999999999999875    5799999999999999985

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.87  E-value=2.5e-22  Score=179.13  Aligned_cols=120  Identities=24%  Similarity=0.370  Sum_probs=98.6

Q ss_pred             cCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHhcCCCC
Q 008788          264 LGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG  343 (553)
Q Consensus       264 ~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~~M~~G  343 (553)
                      +.+.+|+|+++++|.|..|.  +..|++|+|||+|+|.|++|++|++ +.+ +++|++|.+|.++||+||+.+|.+|++|
T Consensus         7 ~~~~Gv~~~vl~~G~G~~p~--~~~G~~V~vhY~g~l~d~~G~~FDs-S~~-rg~P~~f~lG~g~vI~Gwd~gl~~M~~G   82 (165)
T 2lkn_A            7 LREDGIQKRVIQEGRGELPD--FQDGTKATFHYRTLHSDDEGTVLDD-SRA-RGKPMELIIGKKFKLPVWETIVCTMREG   82 (165)
T ss_dssp             HHTTSCCCCEEECCSSCCCC--CCTTCEEEEECEEECSSSSCCEEEE-STT-TTCCEEEESSSSCSCSHHHHHHTTCCTT
T ss_pred             ccCCCeEEEEEECCcCCCCC--CCCCCEEEEEEEEEEeCCCccEEEe-ccc-CCCCEEEEecCCCccHHHHHHHhcCccC
Confidence            45677999999999998652  2479999999999998878999955 444 6899999999999999999999999999


Q ss_pred             cEEEEEeCCCCcccC--------CCCCCC-----------------------------CCCCCeEEEEEEEeeeecCCCC
Q 008788          344 EIALVTCPPDYAYDK--------FLRPAN-----------------------------VPEGAHIQWEIELLGFEKPKDW  386 (553)
Q Consensus       344 E~~~~~~~~~~~yg~--------~g~~~~-----------------------------ip~~~~l~~~ieL~~~~~~~~~  386 (553)
                      |++.|+|||++|||.        ......                             +++.++|+|+|||++++.|.++
T Consensus        83 e~~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~ey  162 (165)
T 2lkn_A           83 EIAQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGTY  162 (165)
T ss_dssp             CEEEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTTC
T ss_pred             ceEEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCccc
Confidence            999999999999982        100111                             2223679999999999998765


Q ss_pred             C
Q 008788          387 T  387 (553)
Q Consensus       387 ~  387 (553)
                      .
T Consensus       163 e  163 (165)
T 2lkn_A          163 Q  163 (165)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.87  E-value=9.4e-22  Score=168.10  Aligned_cols=109  Identities=23%  Similarity=0.370  Sum_probs=98.6

Q ss_pred             cccCCCc-eEEEEEecCCCC-CCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCC
Q 008788           24 MKIVPGS-LMKAVMRPGGGD-STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (553)
Q Consensus        24 ~~~~~~g-~~~~i~~~G~g~-~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~  101 (553)
                      ..++++| ++|+++++|+|. ..|+.||.|++||++++.||++|+++        .|+.|.+|.+++++||+++|.+|++
T Consensus         7 ~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~--------~p~~f~lG~~~~i~g~e~~l~gm~~   78 (118)
T 2awg_A            7 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE--------PELVFTLGDCDVIQALDLSVPLMDV   78 (118)
T ss_dssp             EESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE--------EEEEEETTSSCSCHHHHHHGGGSCT
T ss_pred             eEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC--------CCEEEEECCCChhHHHHHHHhCCCC
Confidence            3444556 999999999997 34899999999999998899999963        4899999999999999999999999


Q ss_pred             CcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 008788          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (553)
Q Consensus       102 G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~  144 (553)
                      |+++.|.|||+++||..+.+    +.|||+++++|+|+|+++.
T Consensus        79 Ge~~~~~ip~~~ayG~~~~~----~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           79 GETAMVTADSKYCYGPQGRS----PYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             TCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred             CCEEEEEEChHHccCCCCCC----CccCCCCeEEEEEEEEEec
Confidence            99999999999999998875    6799999999999999984

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.87  E-value=1.4e-21  Score=173.96  Aligned_cols=110  Identities=23%  Similarity=0.358  Sum_probs=99.8

Q ss_pred             cCCCce-EEEEEecCCCC-CCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCc
Q 008788           26 IVPGSL-MKAVMRPGGGD-STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGE  103 (553)
Q Consensus        26 ~~~~g~-~~~i~~~G~g~-~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~  103 (553)
                      ++++|+ +|+++++|+|. ..|+.||.|+|||++++.||++|+|+        .|+.|.+|.+++++||+++|.+|++|+
T Consensus        39 ~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds~--------~p~~f~lG~g~vi~G~eeaL~gMk~Ge  110 (157)
T 2jwx_A           39 ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE--------PELVFTLGDCDVIQALDLSVPLMDVGE  110 (157)
T ss_dssp             SSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEEE--------EEEEEETTTTSSCHHHHHHTTTSCTTC
T ss_pred             ECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeecC--------CCEEEEeCCCChhHHHHHHHcCCCCCC
Confidence            567776 89999999997 34999999999999999899999964        489999999999999999999999999


Q ss_pred             EEEEEEcCCCccCCCC-CCCCCCCCCCCCCeEEEEEEEEeeeccc
Q 008788          104 VSMFKMKPQMHYGEDD-CPVAAPSTFPKDEELHFEIEMIDFAKAK  147 (553)
Q Consensus       104 ~~~~~ip~~~a~g~~~-~~~~~~~~i~~~~~l~~~v~l~~~~~~~  147 (553)
                      +++|+|||+++||..+ .+    +.||||++|+|+|+|+++....
T Consensus       111 ~~~v~IP~~~aYG~~g~~~----~~IPp~stLiF~VeL~~i~~~~  151 (157)
T 2jwx_A          111 TAMVTADSKYCYGPQGSRS----PYIPPHAALCLEVTLKTAVDLE  151 (157)
T ss_dssp             EEEEEECGGGTTTTTCCSS----SCCCTTCCEEEEEEEEEEEECS
T ss_pred             EEEEEECchhcCCcccccC----CCcCCCCeEEEEEEEEEEEccc
Confidence            9999999999999988 43    6799999999999999997643

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.87  E-value=2.2e-21  Score=166.21  Aligned_cols=106  Identities=23%  Similarity=0.374  Sum_probs=98.6

Q ss_pred             CCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCC--------CCceEEEcCCCCccchHHHhhccCCcCcE
Q 008788          152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE--------GEPYFFTFGKSEVPKGLEMGIGTMTREEK  223 (553)
Q Consensus       152 d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~--------~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~  223 (553)
                      ..++.++++++|+|...|+.||.|+|||++++.||++|+++..        +.|+.|.+|.+++++||+++|.+|++||+
T Consensus         3 p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~   82 (119)
T 3kz7_A            3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEK   82 (119)
T ss_dssp             SCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTCE
T ss_pred             CCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCCE
Confidence            4689999999999977899999999999999999999999864        48999999999999999999999999999


Q ss_pred             EEEEEeCCccCCCCCCC--CCCCCceEEEEEEEeee
Q 008788          224 AVIYVTSQYLTPSPLMP--VVEGCEEVHFEVELVHL  257 (553)
Q Consensus       224 ~~~~v~~~~~~g~~~~~--~i~~~~~l~~~v~l~~~  257 (553)
                      ++|+|||+++||+.+.+  .||++++|+|+|+|+++
T Consensus        83 ~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           83 ARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             EEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence            99999999999997543  79999999999999987

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.86  E-value=1.9e-21  Score=183.19  Aligned_cols=110  Identities=25%  Similarity=0.545  Sum_probs=102.3

Q ss_pred             hccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCC
Q 008788           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (553)
Q Consensus        22 ~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~  101 (553)
                      +...++++|++|+++++|+|.. |..||.|+|||++++.||++|+|++.    ++.|+.|.+  +++|+||+++|.+|++
T Consensus       114 ~~v~~~~sGl~y~vl~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~----~g~p~~f~l--g~vI~G~eeaL~gMk~  186 (224)
T 1q6h_A          114 KGVKTSSTGLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRL--DGVIPGWTEGLKNIKK  186 (224)
T ss_dssp             TTEEECTTSCEEEEEECCSSCC-CCTTCEEEEEEEEEETTSCEEEEGGG----GTSCEEEEG--GGSCHHHHHHGGGSCT
T ss_pred             CCeEECCCceEEEEEecccCcc-ccCCCEEEEEEEEEeCCCCEEeeccc----cCCCEEEEc--CCcchhHHHHHcCCCC
Confidence            4556789999999999999987 99999999999999999999999997    678999999  5899999999999999


Q ss_pred             CcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       102 G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~  143 (553)
                      |++++|+|||+++||..+.+    + ||||++++|+|+|+++
T Consensus       187 Gek~~v~IP~~laYG~~g~~----~-IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          187 GGKIKLVIPPELAYGKAGVP----G-IPPNSTLVFDVELLDV  223 (224)
T ss_dssp             TCEEEEEECGGGTTTTTCBT----T-BCTTCCEEEEEEEEEE
T ss_pred             CCEEEEEECchhhcCcCCCC----C-CCCCCEEEEEEEEEEe
Confidence            99999999999999998864    4 9999999999999987

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=1.3e-21  Score=170.99  Aligned_cols=118  Identities=21%  Similarity=0.301  Sum_probs=102.7

Q ss_pred             hhhhccccCCCceEEEEEecCCCC-CCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcC
Q 008788           19 DDKRRMKIVPGSLMKAVMRPGGGD-STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIP   97 (553)
Q Consensus        19 ~~~~~~~~~~~g~~~~i~~~G~g~-~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~   97 (553)
                      ++++...+.+++++|+++++|+|. ..|+.||.|.+||++++.||++|+++        .|+.|.+|.+++++||+++|.
T Consensus         7 ~~~~~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~--------~p~~f~lG~g~~i~G~e~~L~   78 (135)
T 2d9f_A            7 GEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE--------PELVFTLGDCDVIQALDLSVP   78 (135)
T ss_dssp             CSSCEESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEE--------EEEEEETTSCCSCTTTTTTGG
T ss_pred             cccCcEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecC--------CCEEEEeCCCChhHHHHHHHh
Confidence            344445554444999999999997 34899999999999999899999963        489999999999999999999


Q ss_pred             CCCCCcEEEEEEcCCCccCCCC-CCCCCCCCCCCCCeEEEEEEEEeeecccc
Q 008788           98 TMLKGEVSMFKMKPQMHYGEDD-CPVAAPSTFPKDEELHFEIEMIDFAKAKI  148 (553)
Q Consensus        98 ~m~~G~~~~~~ip~~~a~g~~~-~~~~~~~~i~~~~~l~~~v~l~~~~~~~~  148 (553)
                      +|++|+++.|.|||+++||..+ .+    +.|||+++++|+|+|+++....+
T Consensus        79 gm~~Ge~~~v~ip~~~aYG~~~~~~----~~Ip~~~~l~f~vel~~v~~~~~  126 (135)
T 2d9f_A           79 LMDVGETAMVTADSKYCYGPQGSRS----PYIPPHAALCLEVTLKTAVDRPD  126 (135)
T ss_dssp             GSCTTCEEEEEECHHHHTCTTCCSS----SCCCTTCCEEEEEEEEEEESSCS
T ss_pred             CCCCCCEEEEEEChhHccCcCCcCC----CccCCCCeEEEEEEEEEeecCCc
Confidence            9999999999999999999987 43    67999999999999999976543

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.86  E-value=4.1e-21  Score=169.71  Aligned_cols=108  Identities=31%  Similarity=0.474  Sum_probs=101.5

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (553)
Q Consensus       151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~  229 (553)
                      .|.++.+.++++|.|...|+.||.|+|||++++.||++|+++. .+.|+.|.+|.+++++||+++|.+|++||+++|+||
T Consensus        33 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip  112 (144)
T 3o5e_A           33 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK  112 (144)
T ss_dssp             CSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGGGTSCEEEETTSSSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecccCCCeEEEeCCCcccHHHHHHHhCCCCCCEEEEEEC
Confidence            6889999999999997689999999999999999999999986 478999999999999999999999999999999999


Q ss_pred             CCccCCCCC-CCCCCCCceEEEEEEEeeee
Q 008788          230 SQYLTPSPL-MPVVEGCEEVHFEVELVHLI  258 (553)
Q Consensus       230 ~~~~~g~~~-~~~i~~~~~l~~~v~l~~~~  258 (553)
                      |+++||..+ ++.||++++|+|+|+|++|.
T Consensus       113 p~~aYG~~g~~~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A          113 PEYAYGSAGSLPKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             hHHCcCCCCCCCCcCCCCeEEEEEEEEEec
Confidence            999999864 46899999999999999985

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.85  E-value=5.2e-21  Score=165.81  Aligned_cols=108  Identities=31%  Similarity=0.474  Sum_probs=101.2

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (553)
Q Consensus       151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~  229 (553)
                      .|.++.+.++++|.|...|+.||.|+|||++++.||++|+++. +++|+.|.+|.+++++||+++|.+|++||+++|+||
T Consensus        17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip   96 (128)
T 3o5q_A           17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK   96 (128)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence            6789999999999996689999999999999999999999985 478999999999999999999999999999999999


Q ss_pred             CCccCCCCC-CCCCCCCceEEEEEEEeeee
Q 008788          230 SQYLTPSPL-MPVVEGCEEVHFEVELVHLI  258 (553)
Q Consensus       230 ~~~~~g~~~-~~~i~~~~~l~~~v~l~~~~  258 (553)
                      |+++||..+ ++.||++++|+|+|+|+++.
T Consensus        97 ~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           97 PEYAYGSAGSLPKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             hHHcCCCCCCCCCcCCCCEEEEEEEEEEec
Confidence            999999864 46899999999999999985

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.85  E-value=6.7e-21  Score=164.59  Aligned_cols=111  Identities=18%  Similarity=0.219  Sum_probs=102.5

Q ss_pred             ccCCCCeEEEEEecCCC-cCCCCCCceEEEEEEEEeC-CCcEEeecC---CCCceEEEcCCCCccchHHHhhccCCcCcE
Q 008788          149 IADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTG-DGKLILSHR---EGEPYFFTFGKSEVPKGLEMGIGTMTREEK  223 (553)
Q Consensus       149 ~~~d~g~~~~i~~~g~g-~~~~~~gd~V~v~y~~~~~-~g~~~~s~~---~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~  223 (553)
                      ...+.++.++++++|.+ ...|+.||.|+|||++++. ||++|+++.   .++|+.|.+|.+++++||+++|.+|++||+
T Consensus         8 ~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~   87 (125)
T 4dip_A            8 LIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEK   87 (125)
T ss_dssp             GCCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTCE
T ss_pred             EECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCCE
Confidence            34678999999999982 2889999999999999998 999999986   579999999999999999999999999999


Q ss_pred             EEEEEeCCccCCCCCCCCCCCCceEEEEEEEeeeee
Q 008788          224 AVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQ  259 (553)
Q Consensus       224 ~~~~v~~~~~~g~~~~~~i~~~~~l~~~v~l~~~~~  259 (553)
                      ++|.|||+++||+.+.+.||+|++|+|+|+|+++.+
T Consensus        88 ~~~~ip~~~aYG~~g~~~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           88 RKLIIPPALGYGKEGKGKIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             EEEEECGGGTTTTTCBTTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEChHHhcCCCCCCCCCCCCeEEEEEEEEEEEc
Confidence            999999999999987779999999999999999863

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.85  E-value=8e-21  Score=173.92  Aligned_cols=126  Identities=30%  Similarity=0.456  Sum_probs=101.0

Q ss_pred             CCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCC-CchhHHHHHHhcCCCCc
Q 008788          266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG-LVPEGFEMCVRLMLPGE  344 (553)
Q Consensus       266 dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~-~v~~g~e~~l~~M~~GE  344 (553)
                      +++|.++++++|.|..|    ..|+.|+|||.+++.+ +|++|++|+ . +++|+.|.+|.+ .+++||+.+|.+|++||
T Consensus        48 ~~gl~~~vl~~G~G~~~----~~Gd~V~v~Y~g~l~~-dG~~fdss~-~-~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge  120 (180)
T 2f4e_A           48 DEKVSKQIIKEGHGSKP----SKYSTCFLHYRAWTKN-SQHKFEDTW-H-EQQPIELVLGKEKKELAGLAIGVASMKSGE  120 (180)
T ss_dssp             ETTEEEEEEECCBSCCB----CTTCEEEEEEEEEETT-TCCEEEETT-T-TTCCEEEETTSCCGGGHHHHHHHTTCCBTC
T ss_pred             CCceEEEEEeCCCCCCC----CCCCEEEEEEEEEECC-CCcEEeccC-c-cCCCEEEEeCCCCchhHHHHHHHhCCCCCC
Confidence            45799999999999854    7899999999999875 489985553 3 478999999999 99999999999999999


Q ss_pred             EEEEEeCCCCcccCCCC--CCCCCCCCeEEEEEEEeeeecCCC---CCCCChhhHHHHH
Q 008788          345 IALVTCPPDYAYDKFLR--PANVPEGAHIQWEIELLGFEKPKD---WTGLSFDGIMDEA  398 (553)
Q Consensus       345 ~~~~~~~~~~~yg~~g~--~~~ip~~~~l~~~ieL~~~~~~~~---~~~~~~~e~~~~a  398 (553)
                      ++.|.|||+++||..+.  ++.||++++++|+|+|+++..+.+   .|.|+.++++..|
T Consensus       121 ~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~~A  179 (180)
T 2f4e_A          121 RALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAA  179 (180)
T ss_dssp             EEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBCCC---------------
T ss_pred             EEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHhhc
Confidence            99999999999999886  457999999999999999998877   7899999998776

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.85  E-value=1.5e-20  Score=159.48  Aligned_cols=106  Identities=23%  Similarity=0.323  Sum_probs=98.0

Q ss_pred             CCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeC
Q 008788          152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTS  230 (553)
Q Consensus       152 d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~  230 (553)
                      ++|+.+.++++|.|...|+.||.|++||++++.||++|+++.. ++|+.|.+|.+++++||+++|.+|++||++++.|||
T Consensus         5 ~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~ip~   84 (113)
T 1yat_A            5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPG   84 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEECG
T ss_pred             CCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECH
Confidence            4689999999999954499999999999999999999999865 689999999999999999999999999999999999


Q ss_pred             CccCCCCC-CCCCCCCceEEEEEEEeee
Q 008788          231 QYLTPSPL-MPVVEGCEEVHFEVELVHL  257 (553)
Q Consensus       231 ~~~~g~~~-~~~i~~~~~l~~~v~l~~~  257 (553)
                      +++||+.. ++.||++++|+|+|+|+++
T Consensus        85 ~~ayG~~~~~~~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           85 PYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             GGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             HHCcCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            99999864 4569999999999999987

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.84  E-value=1.5e-20  Score=157.90  Aligned_cols=104  Identities=27%  Similarity=0.442  Sum_probs=96.0

Q ss_pred             CeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCc
Q 008788          154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY  232 (553)
Q Consensus       154 g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~  232 (553)
                      |+.++++++|.|...|+.||.|++||++++.||++|+++.. ++|+.|.+|.+++++||+++|.+|++||++++.|||++
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~   80 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH
Confidence            57899999999955599999999999999999999999863 68999999999999999999999999999999999999


Q ss_pred             cCCCCC-CCCCCCCceEEEEEEEeee
Q 008788          233 LTPSPL-MPVVEGCEEVHFEVELVHL  257 (553)
Q Consensus       233 ~~g~~~-~~~i~~~~~l~~~v~l~~~  257 (553)
                      +||+.. ++.||++++|+|+|+|+++
T Consensus        81 ayG~~~~~~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           81 AYGATGHPGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             ccCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            999864 4679999999999999987

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.84  E-value=2.2e-20  Score=162.50  Aligned_cols=107  Identities=23%  Similarity=0.321  Sum_probs=99.3

Q ss_pred             cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEEE
Q 008788          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (553)
Q Consensus       150 ~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v  228 (553)
                      ..+.++.+.++++|.| ..|+.||.|+|||++++.||++|+++.+ ++|+.|.+|.+++++||+++|.+|++||+++|+|
T Consensus        25 ~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~i  103 (133)
T 2y78_A           25 TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTI  103 (133)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEEE
T ss_pred             ECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEE
Confidence            4567999999999999 7899999999999999999999999864 6899999999999999999999999999999999


Q ss_pred             eCCccCCCCCC-CCCCCCceEEEEEEEeee
Q 008788          229 TSQYLTPSPLM-PVVEGCEEVHFEVELVHL  257 (553)
Q Consensus       229 ~~~~~~g~~~~-~~i~~~~~l~~~v~l~~~  257 (553)
                      ||+++||+.+. +.||||++|+|+|+|+++
T Consensus       104 p~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          104 PPQLGYGARGAGGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             CGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             CcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence            99999998654 469999999999999875

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.84  E-value=2.1e-20  Score=155.46  Aligned_cols=98  Identities=24%  Similarity=0.465  Sum_probs=89.9

Q ss_pred             CCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCC
Q 008788           41 GDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDC  120 (553)
Q Consensus        41 g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~  120 (553)
                      |...++.||.|++||++++.||++|++|+.    ++.|+.|.+|.+++++||+++|.+|++|++++|+|||+++||..+.
T Consensus         2 ~g~~~~~gd~V~v~y~~~~~dG~~~d~s~~----~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~   77 (102)
T 2pbc_A            2 SPIKSRKGDVLHMHYTGKLEDGTEFDSSLP----QNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGA   77 (102)
T ss_dssp             CCCCCCTTCEEEEEEEEECTTSCEEEESTT----TTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCB
T ss_pred             CCCcCCCCCEEEEEEEEEECCCCEEEeCCC----CCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCC
Confidence            333489999999999999889999999986    5789999999999999999999999999999999999999999886


Q ss_pred             CCCCCCCCCCCCeEEEEEEEEeeecc
Q 008788          121 PVAAPSTFPKDEELHFEIEMIDFAKA  146 (553)
Q Consensus       121 ~~~~~~~i~~~~~l~~~v~l~~~~~~  146 (553)
                      +    +.||++++++|+|+|+++...
T Consensus        78 ~----~~Ip~~~~l~f~v~l~~v~~~   99 (102)
T 2pbc_A           78 P----PKIPGGATLVFEVELLKIERR   99 (102)
T ss_dssp             T----TTBCTTCCEEEEEEEEEEGGG
T ss_pred             C----CCcCcCCeEEEEEEEEEeccc
Confidence            5    679999999999999999754

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.84  E-value=5.1e-21  Score=167.03  Aligned_cols=116  Identities=30%  Similarity=0.479  Sum_probs=98.7

Q ss_pred             eeeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHh
Q 008788          259 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVR  338 (553)
Q Consensus       259 ~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~  338 (553)
                      ++.|++.+++|+++++++|.|..+    ..|+.|+|||++++.+ +|++|+++ .. +++|+.|.+|.+.+++||+.+|.
T Consensus        18 ~~~~v~~~~gl~~~vl~~G~g~~~----~~gd~V~v~Y~g~l~~-~G~~fdss-~~-~~~p~~f~lG~g~~i~G~e~aL~   90 (134)
T 3b7x_A           18 RMLDISGDRGVLKDVIREGAGDLV----APDASVLVKYSGYLEH-MDRPFDSN-YF-RKTPRLMKLGEDITLWGMELGLL   90 (134)
T ss_dssp             TCEESSSSSSEEEEEEECCEEEEC----CTTCEEEEEEEEECTT-CSSCSEEC---------CEEC-CCCCCHHHHHHHH
T ss_pred             ccceeeCCCCEEEEEEEcCCCCCC----CCCCEEEEEEEEEECC-CCeEEEec-CC-CCCCEEEEcCCcchhHHHHHHHh
Confidence            357899999999999999999865    5799999999999874 48888544 33 36899999999999999999999


Q ss_pred             cCCCCcEEEEEeCCCCcccCCCCCCCCCCCCeEEEEEEEeeee
Q 008788          339 LMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  381 (553)
Q Consensus       339 ~M~~GE~~~~~~~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~  381 (553)
                      +|++||++.|.|||+++||..+.++.||++++++|+|+|+++.
T Consensus        91 gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           91 SMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             TCEETCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             CCCCCCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEEe
Confidence            9999999999999999999999888899999999999999875

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.83  E-value=3.8e-20  Score=172.87  Aligned_cols=104  Identities=19%  Similarity=0.284  Sum_probs=97.5

Q ss_pred             cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (553)
Q Consensus       150 ~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~  229 (553)
                      ..++|+.++++++|+| ..|+.||.|+|||++++.||++|+|+  +.|++|.+|  ++++||+++|.+|++|++++|+||
T Consensus       114 ~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss--~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~IP  188 (219)
T 3oe2_A          114 ELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS--TQPQWFRLD--SVISGWTSALQNMPTGAKWRLVIP  188 (219)
T ss_dssp             ECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEEC--SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             ECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeecc--CCcEEEEec--chhHHHHHHHhCCCCCCEEEEEEC
Confidence            3567999999999999 78999999999999999999999998  899999998  899999999999999999999999


Q ss_pred             CCccCCCCCCC-CCCCCceEEEEEEEeeee
Q 008788          230 SQYLTPSPLMP-VVEGCEEVHFEVELVHLI  258 (553)
Q Consensus       230 ~~~~~g~~~~~-~i~~~~~l~~~v~l~~~~  258 (553)
                      |+++||..+.+ .||||++|+|+|+|+++.
T Consensus       189 p~lAYG~~g~~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          189 SDQAYGAEGAGDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             chhcCCCCCCCCCCCCCCeEEEEEEEEEEe
Confidence            99999997655 599999999999999985

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.82  E-value=6.4e-20  Score=159.01  Aligned_cols=107  Identities=33%  Similarity=0.464  Sum_probs=96.7

Q ss_pred             CCCCeEEE--EEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEE
Q 008788          151 DDFGVVKK--VINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIY  227 (553)
Q Consensus       151 ~d~g~~~~--i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~  227 (553)
                      .++|+.+.  ++++|.|...|+.||.|+|||++++.||++|+++.. ++|+.|.+|.+++++||+++|.+|++||++.|.
T Consensus        20 ~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~   99 (130)
T 2lgo_A           20 GSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT   99 (130)
T ss_dssp             SSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEEEEE
T ss_pred             CCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEE
Confidence            45677666  999999954499999999999999999999999864 589999999999999999999999999999999


Q ss_pred             EeCCccCCCCC-CCCCCCCceEEEEEEEeee
Q 008788          228 VTSQYLTPSPL-MPVVEGCEEVHFEVELVHL  257 (553)
Q Consensus       228 v~~~~~~g~~~-~~~i~~~~~l~~~v~l~~~  257 (553)
                      |||+++||+.+ ++.||++++|+|+|+|+++
T Consensus       100 ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A          100 IPYQLAYGERGYPPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             ECTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred             ECcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            99999999864 4569999999999999875

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.82  E-value=1.6e-19  Score=154.27  Aligned_cols=113  Identities=27%  Similarity=0.373  Sum_probs=101.2

Q ss_pred             eeeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHh
Q 008788          259 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVR  338 (553)
Q Consensus       259 ~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~  338 (553)
                      .+.+++.+|.+.++++++|.|..  ..|..|+.|+|||++++.+  |++|++      ++|+.|.+|.+.+++||+.+|.
T Consensus         5 ~~~~~~~~g~~~~~vl~~G~G~~--~~~~~gd~V~v~y~g~~~d--G~~~ds------~~p~~f~lG~~~~i~g~e~~l~   74 (118)
T 2awg_A            5 EWLDILGNGLLRKKTLVPGPPGS--SRPVKGQVVTVHLQTSLEN--GTRVQE------EPELVFTLGDCDVIQALDLSVP   74 (118)
T ss_dssp             CEEESSSSSSEEEEEEECCCTTC--CCCCTTSEEEEEEEEECTT--SCEEEE------EEEEEEETTSSCSCHHHHHHGG
T ss_pred             cceEECCCCCEEEEEEEcCCCCC--ccCCCCCEEEEEEEEEECC--CCEEEC------CCCEEEEECCCChhHHHHHHHh
Confidence            35789999999999999999972  1247899999999999855  898843      2689999999999999999999


Q ss_pred             cCCCCcEEEEEeCCCCcccCCCCCCCCCCCCeEEEEEEEeeee
Q 008788          339 LMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  381 (553)
Q Consensus       339 ~M~~GE~~~~~~~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~  381 (553)
                      +|++||++.|.|||+++||..+.++.||++++++|+|+|+++.
T Consensus        75 gm~~Ge~~~~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           75 LMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             GSCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence            9999999999999999999999888899999999999999875

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.82  E-value=1.7e-19  Score=156.65  Aligned_cols=117  Identities=32%  Similarity=0.530  Sum_probs=101.0

Q ss_pred             eeccCCCceEEEEEecC-CCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHhc
Q 008788          261 RDMLGDGRLIKRRIRDG-KGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL  339 (553)
Q Consensus       261 ~d~~~dg~l~k~il~~G-~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~~  339 (553)
                      .+++.+|.++|+++++| .|.-  ..|..|+.|+|||+++++. +|++|+++. . +++|++|.+|.+.+++||+.+|.+
T Consensus        10 ~~~~~~g~~~~~il~~G~~g~g--~~~~~gd~V~v~Y~g~~~~-dG~~fd~s~-~-~~~p~~f~lG~g~~i~g~e~~l~g   84 (129)
T 2vn1_A           10 VELTADGGVIKTILKKGDEGEE--NIPKKGNEVTVHYVGKLES-TGKVFDSSF-D-RNVPFKFHLEQGEVIKGWDICVSS   84 (129)
T ss_dssp             EECSTTSSEEEEEEECCCCSGG--GSCCTTCEEEEEEEEEETT-TCCEEEEGG-G-TTCCEEEETTSSSSCHHHHHHHTT
T ss_pred             cEECCCCCEEEEEEeCCCCCCC--CcCCCCCEEEEEEEEEECC-CCeEEEecC-C-CCccEEEEeCCCCcCHHHHHHHhC
Confidence            46788999999999977 5531  1247899999999999832 389985554 2 368999999999999999999999


Q ss_pred             CCCCcEEEEEeCCCCcccCCCCCCCCCCCCeEEEEEEEeeeec
Q 008788          340 MLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK  382 (553)
Q Consensus       340 M~~GE~~~~~~~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~  382 (553)
                      |++||++.|.|||+++||..+.++.||++++++|+|+|+++..
T Consensus        85 m~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           85 MRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             CCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCCCEEEEEEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence            9999999999999999999998888999999999999999875

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.81  E-value=2.3e-19  Score=168.14  Aligned_cols=108  Identities=23%  Similarity=0.321  Sum_probs=100.0

Q ss_pred             ccCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEE
Q 008788          149 IADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIY  227 (553)
Q Consensus       149 ~~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~  227 (553)
                      ...++|+.+.++.+|+| ..|+.||.|+|||++++.||++|+++. .+.|+.|.+|.+++++||+++|.+|++||+++|+
T Consensus       100 ~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v~  178 (209)
T 3uf8_A          100 VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLT  178 (209)
T ss_dssp             EECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEEE
T ss_pred             cCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEEE
Confidence            44678999999999999 679999999999999999999999986 4789999999999999999999999999999999


Q ss_pred             EeCCccCCCCCC-CCCCCCceEEEEEEEeee
Q 008788          228 VTSQYLTPSPLM-PVVEGCEEVHFEVELVHL  257 (553)
Q Consensus       228 v~~~~~~g~~~~-~~i~~~~~l~~~v~l~~~  257 (553)
                      |||+++||+.+. +.||+|++|+|+|+|+++
T Consensus       179 Ipp~~aYG~~g~~~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          179 IPPQLGYGARGAAGVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             ECcHHhCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            999999999654 459999999999999875

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.81  E-value=2e-19  Score=160.17  Aligned_cols=115  Identities=27%  Similarity=0.360  Sum_probs=102.3

Q ss_pred             eeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHhc
Q 008788          260 VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL  339 (553)
Q Consensus       260 ~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~~  339 (553)
                      +.|++.+|.+.++++++|+|..  ..|..|+.|+|||++++.|  |++|++      ++|++|.+|.+.+++||+.+|.+
T Consensus        36 ~~~~~~sG~v~~~vl~~G~G~~--~~p~~gd~V~v~Y~g~l~d--G~~fds------~~p~~f~lG~g~vi~G~eeaL~g  105 (157)
T 2jwx_A           36 WLDILGNGLLRKKTLVPGPPGS--SRPVKGQVVTVHLQTSLEN--GTRVQE------EPELVFTLGDCDVIQALDLSVPL  105 (157)
T ss_dssp             CEESSSSSSEEEEEEECCSTTS--CCCCTTEEEEEEEEEECTT--SCEEEE------EEEEEEETTTTSSCHHHHHHTTT
T ss_pred             cceECCCCCEEEEEEEccCCCc--cCCCCCCEEEEEEEEEECC--CCEeec------CCCEEEEeCCCChhHHHHHHHcC
Confidence            4578899999999999999962  1247899999999999865  999854      26899999999999999999999


Q ss_pred             CCCCcEEEEEeCCCCcccCCC-CCCCCCCCCeEEEEEEEeeeecCC
Q 008788          340 MLPGEIALVTCPPDYAYDKFL-RPANVPEGAHIQWEIELLGFEKPK  384 (553)
Q Consensus       340 M~~GE~~~~~~~~~~~yg~~g-~~~~ip~~~~l~~~ieL~~~~~~~  384 (553)
                      |++||++.|.||++++||..+ .++.||++++++|+|+|+++....
T Consensus       106 Mk~Ge~~~v~IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~~  151 (157)
T 2jwx_A          106 MDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDLE  151 (157)
T ss_dssp             SCTTCEEEEEECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEECS
T ss_pred             CCCCCEEEEEECchhcCCcccccCCCcCCCCeEEEEEEEEEEEccc
Confidence            999999999999999999999 677899999999999999998754

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.81  E-value=8.1e-20  Score=158.47  Aligned_cols=107  Identities=21%  Similarity=0.231  Sum_probs=98.9

Q ss_pred             cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhcc------CCcCc
Q 008788          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGT------MTREE  222 (553)
Q Consensus       150 ~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~------mk~Ge  222 (553)
                      ..++++.+.++++|.| ..++.||.|+|||++++.+|++|+++.. ++|+.|.+|.+++++||+++|.+      |++||
T Consensus         9 ~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~Ge   87 (129)
T 1u79_A            9 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG   87 (129)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred             ECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCCCC
Confidence            3567999999999999 7899999999999999999999999864 68999999999999999999998      99999


Q ss_pred             EEEEEEeCCccCCCCCC------CCCCCCceEEEEEEEeee
Q 008788          223 KAVIYVTSQYLTPSPLM------PVVEGCEEVHFEVELVHL  257 (553)
Q Consensus       223 ~~~~~v~~~~~~g~~~~------~~i~~~~~l~~~v~l~~~  257 (553)
                      +++|.|||+++||+...      +.||+|++|+|+|+|+++
T Consensus        88 ~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           88 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            99999999999998653      579999999999999986

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=1.2e-19  Score=158.61  Aligned_cols=122  Identities=26%  Similarity=0.324  Sum_probs=107.4

Q ss_pred             eeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHhc
Q 008788          260 VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL  339 (553)
Q Consensus       260 ~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~~  339 (553)
                      +.+++.+|.+.++++++|.|..  ..|..|+.|+|||++++.|  |++|++      ++|+.|.+|.+.+++||+.+|.+
T Consensus        10 ~~~~~~~g~l~~~vl~~G~G~~--~~~~~gd~V~v~Y~g~~~d--G~~fds------~~p~~f~lG~g~~i~G~e~~L~g   79 (135)
T 2d9f_A           10 WLDILGNGLLRKKTLVPGPPGS--SRPVKGQVVTVHLQTSLEN--GTRVQE------EPELVFTLGDCDVIQALDLSVPL   79 (135)
T ss_dssp             CEESSSSSSSEEEEEECCCSSC--CCCCTTSEEEEEEEEEESS--SCEEEE------EEEEEEETTSCCSCTTTTTTGGG
T ss_pred             CcEECCCCCEEEEEEEcCCCCC--ccCCCCCEEEEEEEEEECC--CCEEec------CCCEEEEeCCCChhHHHHHHHhC
Confidence            5688999999999999999962  1247899999999999865  898853      36899999999999999999999


Q ss_pred             CCCCcEEEEEeCCCCcccCCC-CCCCCCCCCeEEEEEEEeeeecCCCCCCCCh
Q 008788          340 MLPGEIALVTCPPDYAYDKFL-RPANVPEGAHIQWEIELLGFEKPKDWTGLSF  391 (553)
Q Consensus       340 M~~GE~~~~~~~~~~~yg~~g-~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~  391 (553)
                      |++||++.|.||++++||..+ .++.||++++++|+|+|+++....+...++.
T Consensus        80 m~~Ge~~~v~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~~~e~~s~  132 (135)
T 2d9f_A           80 MDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPDLEMSGP  132 (135)
T ss_dssp             SCTTCEEEEEECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSCSSSSCCC
T ss_pred             CCCCCEEEEEEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCCchhhcCc
Confidence            999999999999999999998 6778999999999999999998776665553

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.80  E-value=1.9e-19  Score=162.05  Aligned_cols=108  Identities=20%  Similarity=0.291  Sum_probs=98.1

Q ss_pred             cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEE
Q 008788          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (553)
Q Consensus       150 ~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v  228 (553)
                      ..++|+.+.++++|.|...|+.||.|+|||++++.||++|+++. ++.|+.|.+  +++++||+++|.+|++|++++|+|
T Consensus        34 ~~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~dG~~fdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Ge~~~~~I  111 (167)
T 1jvw_A           34 KLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRP--NEVIKGWTEALQLMREGDRWRLFI  111 (167)
T ss_dssp             ECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECG--GGSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             ECCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEe--CchhHHHHHHHcCCCCCCEEEEEE
Confidence            45689999999999994339999999999999999999999986 468999999  499999999999999999999999


Q ss_pred             eCCccCCCCC-CCCCCCCceEEEEEEEeeeee
Q 008788          229 TSQYLTPSPL-MPVVEGCEEVHFEVELVHLIQ  259 (553)
Q Consensus       229 ~~~~~~g~~~-~~~i~~~~~l~~~v~l~~~~~  259 (553)
                      ||+++||..+ ++.||||++|+|+|+|+++..
T Consensus       112 p~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~~  143 (167)
T 1jvw_A          112 PYDLAYGVTGGGGMIPPYSPLEFDVELISIKD  143 (167)
T ss_dssp             CGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGG
T ss_pred             CchhhCCCCCCCCCcCCCCeEEEEEEEEEEEc
Confidence            9999999865 457999999999999999964

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.79  E-value=1.8e-18  Score=149.72  Aligned_cols=115  Identities=28%  Similarity=0.543  Sum_probs=107.3

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (553)
                      .+.++.++++|+.+|+.|+|++|+..|++|++    .+|.+           ..+|+|+|.|+++++++++|+.+|++|+
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~al   74 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK----RDPEN-----------AILYSNRAACLTKLMEFQRALDDCDTCI   74 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence            35688999999999999999999999999999    67877           6799999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       475 ~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      +++|+++++|+++|.++..+|+|++|+.+|++|++++|+| .+++..|..|
T Consensus        75 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-~~a~~~l~~~  124 (126)
T 4gco_A           75 RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN-EEAREGVRNC  124 (126)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC-HHHHHHHHHh
Confidence            9999999999999999999999999999999999999998 5677777665

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.79  E-value=6.4e-19  Score=164.78  Aligned_cols=107  Identities=24%  Similarity=0.287  Sum_probs=98.5

Q ss_pred             cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEE
Q 008788          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (553)
Q Consensus       150 ~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v  228 (553)
                      ..++|+.+.++++|+| ..|+.||.|+|||++++.||++|+++. ++.|+.|.+  +++++||+++|.+|++|++++|+|
T Consensus       103 ~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~I  179 (213)
T 1fd9_A          103 VLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQLMPAGSTWEIYV  179 (213)
T ss_dssp             ECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEG--GGSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             ECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEc--CchhhHHHHHHcCCCCCCEEEEEE
Confidence            3568999999999999 889999999999999999999999986 478999999  489999999999999999999999


Q ss_pred             eCCccCCCCCC-CCCCCCceEEEEEEEeeeee
Q 008788          229 TSQYLTPSPLM-PVVEGCEEVHFEVELVHLIQ  259 (553)
Q Consensus       229 ~~~~~~g~~~~-~~i~~~~~l~~~v~l~~~~~  259 (553)
                      ||+++||+.+. +.|||+++|+|+|+|+++.+
T Consensus       180 P~~laYG~~g~~~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          180 PSGLAYGPRSVGGPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             CGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             CchhccCccCCCCCCCCCCeEEEEEEEEEEEc
Confidence            99999998654 67999999999999999863

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.79  E-value=8e-19  Score=165.26  Aligned_cols=104  Identities=23%  Similarity=0.363  Sum_probs=97.1

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (553)
Q Consensus       151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~  229 (553)
                      .++++.+.++++|.| ..|+.||.|+|||++++.||++|+|+. ++.|+.|.+  ++++|||+++|.+|++|++++|+||
T Consensus       119 ~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~IP  195 (224)
T 1q6h_A          119 SSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVIP  195 (224)
T ss_dssp             CTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEG--GGSCHHHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEc--CCcchhHHHHHcCCCCCCEEEEEEC
Confidence            467999999999999 789999999999999999999999986 478999999  4999999999999999999999999


Q ss_pred             CCccCCCCCCCCCCCCceEEEEEEEeee
Q 008788          230 SQYLTPSPLMPVVEGCEEVHFEVELVHL  257 (553)
Q Consensus       230 ~~~~~g~~~~~~i~~~~~l~~~v~l~~~  257 (553)
                      |+++||..+.+.||+|++|+|+|+|+++
T Consensus       196 ~~laYG~~g~~~IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          196 PELAYGKAGVPGIPPNSTLVFDVELLDV  223 (224)
T ss_dssp             GGGTTTTTCBTTBCTTCCEEEEEEEEEE
T ss_pred             chhhcCcCCCCCCCCCCEEEEEEEEEEe
Confidence            9999999766569999999999999987

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.79  E-value=4.1e-19  Score=157.97  Aligned_cols=139  Identities=18%  Similarity=0.190  Sum_probs=117.2

Q ss_pred             hHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHH-HHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-KVFVGKRNLLHLNVAACLLKLGECRKSIEACN  471 (553)
Q Consensus       393 e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~-~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  471 (553)
                      .....+..+++.|+.+|+.|+|++|+..|++||++    +|.+.+.. .........+|+|+|.|+.++|+|++|+.+|+
T Consensus         6 ~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l----~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~   81 (159)
T 2hr2_A            6 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEI----SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD   81 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34568899999999999999999999999999994    44321100 00111234599999999999999999999999


Q ss_pred             HHHhh-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008788          472 KVLDA-------NPAHVKGL----YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRL  536 (553)
Q Consensus       472 ~al~~-------dp~n~ka~----~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~  536 (553)
                      +||++       +|++.++|    |++|.++..+|+|++|+.+|++|++++|++. .+.+++..+++.+++..++.
T Consensus        82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~-~~~~~~~~~~~~~~~~~~k~  156 (159)
T 2hr2_A           82 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK-GETPGKERMMEVAIDRIAQL  156 (159)
T ss_dssp             HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC-SCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHh
Confidence            99999       99999999    9999999999999999999999999999874 57888888888888776654

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.78  E-value=8e-19  Score=145.86  Aligned_cols=94  Identities=24%  Similarity=0.326  Sum_probs=87.0

Q ss_pred             CCCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCC-CCCCCC
Q 008788          167 ETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPL-MPVVEG  244 (553)
Q Consensus       167 ~~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~-~~~i~~  244 (553)
                      ..++.||.|++||++++.||++|+++.. ++|+.|.+|.+++++||+++|.+|++||+++|+|||+++||+.. ++.||+
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~   83 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPG   83 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBTTTBCT
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCc
Confidence            6789999999999999889999999864 68999999999999999999999999999999999999999864 457999


Q ss_pred             CceEEEEEEEeeeeee
Q 008788          245 CEEVHFEVELVHLIQV  260 (553)
Q Consensus       245 ~~~l~~~v~l~~~~~~  260 (553)
                      +++++|+|+|+++.+.
T Consensus        84 ~~~l~f~v~l~~v~~~   99 (102)
T 2pbc_A           84 GATLVFEVELLKIERR   99 (102)
T ss_dssp             TCCEEEEEEEEEEGGG
T ss_pred             CCeEEEEEEEEEeccc
Confidence            9999999999999754

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.77  E-value=7.3e-18  Score=157.33  Aligned_cols=169  Identities=21%  Similarity=0.245  Sum_probs=131.5

Q ss_pred             EEEeeeecCCCCCCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChh-----HHHHHhhhhhHH
Q 008788          375 IELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE-----EGKVFVGKRNLL  449 (553)
Q Consensus       375 ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~e-----e~~~~~~~~~~~  449 (553)
                      ..+..++...+.|.++.+++...+..++..|+.++..|+|.+|+..|++|++.    .|.+.+     .......+...+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~   90 (198)
T 2fbn_A           15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF----FIHTEEWDDQILLDKKKNIEISC   90 (198)
T ss_dssp             -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TTTCTTCCCHHHHHHHHHHHHHH
T ss_pred             hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HhcccccchhhHHHHHHHHHHHH
Confidence            34556777888889999999999999999999999999999999999999994    333320     111123334579


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       450 ~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      ++|+|.|++++++|++|+.+|+++++++|.+.++++++|.++..+|+|++|+..|+++++++|++ ..+...+..+...+
T Consensus        91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~  169 (198)
T 2fbn_A           91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN-LDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999997 56899999999999


Q ss_pred             HHHHHHHHHHHHhhccccc
Q 008788          530 RKLKVRLENSLKGCLTRSL  548 (553)
Q Consensus       530 ~~~~~~~~~~~~~mf~~~~  548 (553)
                      .+..+.++..|++||+...
T Consensus       170 ~~~~~~~~~~~~~~f~~~~  188 (198)
T 2fbn_A          170 KEARKKDKLTFGGMFDKGP  188 (198)
T ss_dssp             HHHHC--------------
T ss_pred             HHHHHHHHHHHHHHhcccc
Confidence            9999999999999998753

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.75  E-value=1.4e-17  Score=171.44  Aligned_cols=155  Identities=26%  Similarity=0.451  Sum_probs=132.7

Q ss_pred             ChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccC-CCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 008788          390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE  468 (553)
Q Consensus       390 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~-~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~  468 (553)
                      +.++.+..+..++..|+.+++.|+|++|+..|++|++++.... ..+.++..........+|+|+|.||+++++|++|+.
T Consensus       215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  294 (370)
T 1ihg_A          215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD  294 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            5788889999999999999999999999999999999654421 011222233455567899999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008788          469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLT  545 (553)
Q Consensus       469 ~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (553)
                      +|++||+++|+++++||++|.+|..+++|++|+.+|++|++++|++ ..++..+..+...+.+.++++++.|++||+
T Consensus       295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~-~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~  370 (370)
T 1ihg_A          295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAIQAELLKVKQKIKAQKDKEKAAYAKMFA  370 (370)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999997 569999999999999999999999999995

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.69  E-value=2.2e-16  Score=136.61  Aligned_cols=115  Identities=21%  Similarity=0.354  Sum_probs=102.7

Q ss_pred             HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (553)
Q Consensus       394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (553)
                      ..+.|..+++.|+.+|+.|+|++|+..|++||+    ++|.+           ..+|+|+|.||+++++|++|+.+|+++
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~----~~p~~-----------~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE----LDPSN-----------ITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            356788999999999999999999999999999    67876           678999999999999999999999999


Q ss_pred             HhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          474 LDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       474 l~~dp~n-------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      |+++|++       .++|+++|.++..+++|++|++.|+++++++|+  ++..+.|..+
T Consensus        69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~--~~~~~~l~~l  125 (127)
T 4gcn_A           69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD--PELVKKVKEL  125 (127)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC--HHHHHHHHHH
T ss_pred             HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC--HHHHHHHHHh
Confidence            9999876       468999999999999999999999999999997  3455555544

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.69  E-value=6.5e-16  Score=138.45  Aligned_cols=84  Identities=25%  Similarity=0.398  Sum_probs=75.6

Q ss_pred             CCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCC
Q 008788           44 TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVA  123 (553)
Q Consensus        44 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~  123 (553)
                      .+++||.|++||++++.||++|+||+.    ++.|+.|.+|.+++++||+++|.+|++|++++|.|||++|||..     
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~----~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~-----   94 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRN----NGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVP-----   94 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCC-----
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC-----
Confidence            478999999999999999999999987    56899999999999999999999999999999999999999975     


Q ss_pred             CCCCCCCCCeEEEEEEEEee
Q 008788          124 APSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       124 ~~~~i~~~~~l~~~v~l~~~  143 (553)
                             +..+++.|....+
T Consensus        95 -------~~~lv~~vp~~~f  107 (169)
T 4dt4_A           95 -------SPDLIQYFSRREF  107 (169)
T ss_dssp             -------CGGGEEEEEGGGG
T ss_pred             -------ChHHEEEeCHHHC
Confidence                   4567777765555

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=1.1e-15  Score=131.13  Aligned_cols=117  Identities=26%  Similarity=0.415  Sum_probs=107.4

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|+.+++.|+|++|+..|++|++    ..|.+           ..+++|+|.|++++++|++|+.++++++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPED-----------ARGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            477889999999999999999999999999    67766           679999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD------KSSEPDATAALSKLKKQR  529 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~------P~~~~~~~~~l~~l~~~~  529 (553)
                      +|+++.+|+++|.++..+|++++|+.+|+++++++      |++ ..+...+..+..++
T Consensus        68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~-~~~~~~l~~~~~~l  125 (126)
T 3upv_A           68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA-REIDQLYYKASQQR  125 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH-HHHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhH-HHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999      875 56777777776543

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.63  E-value=1e-14  Score=129.25  Aligned_cols=83  Identities=20%  Similarity=0.314  Sum_probs=73.4

Q ss_pred             CCCCCCEEEEEEEEEec-CCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCC
Q 008788           44 TPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPV  122 (553)
Q Consensus        44 ~~~~gd~V~v~y~~~~~-~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~  122 (553)
                      .++.||.|++||++++. ||++|+||+.     ..|+.|.+|.+++++||+++|.+|++|+++.|.|||++|||..+   
T Consensus         6 ~i~~gd~V~v~Y~g~~~~dG~~fdss~~-----~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~---   77 (151)
T 2kr7_A            6 LESIKQAALIEYEVREQGSSIVLDSNIS-----KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE---   77 (151)
T ss_dssp             CTTSCCEEEEEEEEEESSCSCEEEESTT-----TCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC---
T ss_pred             CCCCCCEEEEEEEEEECCCCCEEEeCCC-----CcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC---
Confidence            37899999999999987 9999999984     57999999999999999999999999999999999999999763   


Q ss_pred             CCCCCCCCCCeEEEEEEEEee
Q 008788          123 AAPSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       123 ~~~~~i~~~~~l~~~v~l~~~  143 (553)
                               ..+++.|....+
T Consensus        78 ---------~~~v~~v~~~~f   89 (151)
T 2kr7_A           78 ---------SSYLQEVPRDQF   89 (151)
T ss_dssp             ---------SCEEEEEEGGGG
T ss_pred             ---------cceEEEEcHHHc
Confidence                     556776655554

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.62  E-value=3e-15  Score=132.85  Aligned_cols=86  Identities=26%  Similarity=0.334  Sum_probs=72.3

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccc-------C--CCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCcc
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSE-------Y--GGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHY  115 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~-------~--~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~  115 (553)
                      +++||.|++||++++ ||++|+||+..       +  +..+.|+.|.+|.+++++||+++|.+|++|++++|+|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY   80 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence            588999999999999 99999999851       0  1113799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788          116 GEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       116 g~~~~~~~~~~~i~~~~~l~~~v~l~~~  143 (553)
                      |..+            ..++..|....+
T Consensus        81 G~~~------------~~~V~~v~~~~f   96 (157)
T 3pr9_A           81 GKRD------------PSKIKLIPLSEF   96 (157)
T ss_dssp             CCCC------------GGGEEEEEHHHH
T ss_pred             CCCC------------hHhEEEcCHHHC
Confidence            9764            556666655444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.62  E-value=8.7e-15  Score=130.63  Aligned_cols=104  Identities=12%  Similarity=0.156  Sum_probs=99.2

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+...|..+++.|+|++|+..|++++.    .+|.+           ..+|+|+|.|+..+++|++|+..|.+|++
T Consensus        34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~----~~P~~-----------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI----YDFYN-----------VDYIMGLAAIYQIKEQFQQAADLYAVAFA   98 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            4577889999999999999999999999999    78877           67999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ++|+++.+||++|.||..+|++++|+..|++|+++.|++
T Consensus        99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A           99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            999999999999999999999999999999999999984

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.61  E-value=9.1e-15  Score=131.80  Aligned_cols=125  Identities=18%  Similarity=0.304  Sum_probs=110.6

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (553)
                      ...+..+...|+.+++.|+|++|+..|++|++    ..|.+           ..+++++|.||+++++|++|+.++++++
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al   72 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALS----IAPAN-----------PIYLSNRAAAYSASGQHEKAAEDAELAT   72 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCcC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            35688899999999999999999999999999    67766           6789999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHHHHHH
Q 008788          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP-DATAALSKLKKQRRKLKV  534 (553)
Q Consensus       475 ~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~-~~~~~l~~l~~~~~~~~~  534 (553)
                      +++|+++.+|+++|.++..+|+|++|+.+|+++++++|++.. .+...+..+++++.+..+
T Consensus        73 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~  133 (164)
T 3sz7_A           73 VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANR  133 (164)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999998742 255666666666655443

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.61  E-value=6e-16  Score=130.13  Aligned_cols=82  Identities=16%  Similarity=0.267  Sum_probs=73.9

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEc-CCCccCCCCCCCC
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK-PQMHYGEDDCPVA  123 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip-~~~a~g~~~~~~~  123 (553)
                      ++.||.|+++|++++ ||++|++++      +.|+.|.+|.+++++||+++|.+|++|++++|.|| |+. ||..+.   
T Consensus        30 ~~~gD~V~v~Y~g~~-dG~~fdss~------~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~~---   98 (113)
T 1hxv_A           30 LANGDIAIIDFTGIV-DNKKLASAS------AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKEL---   98 (113)
T ss_dssp             CCSSEEEEEEEEEEE-TTEECSTTC------CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSGG---
T ss_pred             CCCCCEEEEEEEEEE-CCEEcccCC------ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCCC---
Confidence            899999999999998 999999885      47999999999999999999999999999999997 443 997654   


Q ss_pred             CCCCCCCCCeEEEEEEEEee
Q 008788          124 APSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       124 ~~~~i~~~~~l~~~v~l~~~  143 (553)
                            ++++++|+|+|+++
T Consensus        99 ------~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           99 ------QSKPVTFEVVLKAI  112 (113)
T ss_dssp             ------GSCCCEEEEEECCB
T ss_pred             ------CCCEEEEEEEEEEE
Confidence                  37999999999886

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.60  E-value=6.4e-15  Score=135.42  Aligned_cols=82  Identities=23%  Similarity=0.302  Sum_probs=72.3

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~  124 (553)
                      +++||.|+|+|++++.||++|+||+.     ..|+.|.+|.++++|||+++|.+|++|++++|+|||++|||.++     
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~-----~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~-----   72 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD-----   72 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECCT-----TSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC-----
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecCC-----CCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC-----
Confidence            68999999999999889999999985     47999999999999999999999999999999999999999763     


Q ss_pred             CCCCCCCCeEEEEEEEEee
Q 008788          125 PSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       125 ~~~i~~~~~l~~~v~l~~~  143 (553)
                             ..+++.|.+..|
T Consensus        73 -------~~lV~~vp~~~f   84 (196)
T 2kfw_A           73 -------ENLVQRVPKDVF   84 (196)
T ss_dssp             -------TTTCEEECGGGC
T ss_pred             -------hhhEEEEEHHHC
Confidence                   445666655444

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.59  E-value=1e-14  Score=131.44  Aligned_cols=71  Identities=17%  Similarity=0.104  Sum_probs=67.0

Q ss_pred             CCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCC
Q 008788          169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM  239 (553)
Q Consensus       169 ~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~  239 (553)
                      ++.||.|+++|++++.+|++|+|+..++|+.|.+|.++++|||+++|.+|++|++++|.|||+.+||.+.+
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~   73 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE   73 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCSSSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCCT
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccCCcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCCh
Confidence            67899999999999889999999987799999999999999999999999999999999999999998643

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.58  E-value=1.2e-15  Score=135.24  Aligned_cols=87  Identities=21%  Similarity=0.349  Sum_probs=73.1

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccc-------C-C-CCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCcc
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSE-------Y-G-GKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHY  115 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~-------~-~-~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~  115 (553)
                      +++||.|++||++++.||++|+||+.+       + . ....|+.|.+|.+++++||+++|.+|++|++++|.|||++||
T Consensus         2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY   81 (151)
T 1ix5_A            2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence            689999999999998899999999620       0 0 023699999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788          116 GEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       116 g~~~~~~~~~~~i~~~~~l~~~v~l~~~  143 (553)
                      |..+            ..+++.|.+..+
T Consensus        82 G~~~------------~~~v~~v~~~~f   97 (151)
T 1ix5_A           82 GNRN------------EMLIQKIPRDAF   97 (151)
T ss_dssp             CSCC------------STTBCCEETHHH
T ss_pred             CCCC------------ccEEEEEEHHHc
Confidence            9764            455666666655

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.57  E-value=3e-15  Score=125.85  Aligned_cols=84  Identities=21%  Similarity=0.196  Sum_probs=74.4

Q ss_pred             CCCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe-CCccCCCCCCCCCCCC
Q 008788          167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT-SQYLTPSPLMPVVEGC  245 (553)
Q Consensus       167 ~~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~-~~~~~g~~~~~~i~~~  245 (553)
                      ..++.||.|+++|++++ ||++|+++. ++|+.|.+|.++++|||+++|.+|++||++.|.|| |+. ||...    .++
T Consensus        28 ~~~~~gD~V~v~Y~g~~-dG~~fdss~-~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~----~~g  100 (113)
T 1hxv_A           28 KKLANGDIAIIDFTGIV-DNKKLASAS-AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKE----LQS  100 (113)
T ss_dssp             -CCCSSEEEEEEEEEEE-TTEECSTTC-CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSG----GGS
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEcccCC-ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCC----CCC
Confidence            56889999999999998 999999885 78999999999999999999999999999999996 544 88653    256


Q ss_pred             ceEEEEEEEeee
Q 008788          246 EEVHFEVELVHL  257 (553)
Q Consensus       246 ~~l~~~v~l~~~  257 (553)
                      ++++|+|+|+++
T Consensus       101 ~~l~F~V~l~~V  112 (113)
T 1hxv_A          101 KPVTFEVVLKAI  112 (113)
T ss_dssp             CCCEEEEEECCB
T ss_pred             CEEEEEEEEEEE
Confidence            999999999886

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.57  E-value=1.7e-14  Score=130.03  Aligned_cols=70  Identities=23%  Similarity=0.326  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCC
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDD  119 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~  119 (553)
                      +++||.|+++|++++.||++|+||+.     ..|+.|.+|.++++|||+++|.+|++|++++|.|||+.|||..+
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~-----~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~   72 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCS-----SSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccC-----CcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC
Confidence            68899999999999889999999984     47999999999999999999999999999999999999999874

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.56  E-value=6.1e-14  Score=123.32  Aligned_cols=122  Identities=14%  Similarity=0.221  Sum_probs=106.4

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+...|..+++.|+|.+|+..|++++.    .+|.+           ..+++++|.|+.++++|++|+..+.+++.
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   80 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCM----LDHYD-----------ARYFLGLGACRQSLGLYEQALQSYSYGAL   80 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3566788899999999999999999999999    67876           67899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 008788          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLK  533 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~  533 (553)
                      ++|+++.+++.+|.++..+|++++|+..|+++++++|++. .......++...+...+
T Consensus        81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~l~~l~  137 (142)
T 2xcb_A           81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP-AHEALAARAGAMLEAVT  137 (142)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHH
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999863 34444555555444433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.55  E-value=5.8e-14  Score=124.73  Aligned_cols=117  Identities=13%  Similarity=0.203  Sum_probs=102.8

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+...|..++..|+|.+|+..|++++.    .+|.+           ..+++++|.|+..+++|++|+..|++++.
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCV----LDHYD-----------SRFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCccc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3566788899999999999999999999999    67877           67899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      ++|+++.+++.+|.++..+|++++|+..|+++++++|++. .......++...
T Consensus        84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~  135 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP-EFXELSTRVSSM  135 (148)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC-cchHHHHHHHHH
Confidence            9999999999999999999999999999999999999863 333333333333

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.54  E-value=1.4e-14  Score=136.15  Aligned_cols=74  Identities=27%  Similarity=0.372  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccc-------C--CCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCcc
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSE-------Y--GGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHY  115 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~-------~--~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~  115 (553)
                      +++||.|++||++++ ||++|+||+..       +  +..+.|+.|.+|.+++++||+++|.+|++|++++|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY   80 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence            578999999999999 99999999851       0  1123799999999999999999999999999999999999999


Q ss_pred             CCCC
Q 008788          116 GEDD  119 (553)
Q Consensus       116 g~~~  119 (553)
                      |.++
T Consensus        81 Ge~~   84 (231)
T 3prb_A           81 GKRD   84 (231)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9875

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.54  E-value=5.7e-14  Score=121.76  Aligned_cols=120  Identities=26%  Similarity=0.419  Sum_probs=107.6

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..++..|+|++|+..|++|+.    ..|.+           ..+++++|.|++.+++|++|+.++.++++++
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   73 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLV-----------AVYYTNRALCYLKMQQPEQALADCRRALELD   73 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHh----hCcCc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            66788999999999999999999999999    66665           5789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS-----SEPDATAALSKLKKQRRKLK  533 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~-----~~~~~~~~l~~l~~~~~~~~  533 (553)
                      |+++.+++.+|.++..+|++++|+..|+++++++|+     + ..+...+..+..+.....
T Consensus        74 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~-~~~~~~l~~~~~~~~~~~  133 (137)
T 3q49_B           74 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-DDIPSALRIAKKKRWNSI  133 (137)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCT-THHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999987     4 457777777766655443

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.52  E-value=3.3e-14  Score=133.64  Aligned_cols=69  Identities=22%  Similarity=0.144  Sum_probs=64.4

Q ss_pred             CCCCceEEEEEEEEeCCCcEEeecCC--------------CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccC
Q 008788          169 PRAPYEVKAWISAKTGDGKLILSHRE--------------GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT  234 (553)
Q Consensus       169 ~~~gd~V~v~y~~~~~~g~~~~s~~~--------------~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~  234 (553)
                      ++.||.|++||++++ ||++|+||..              ++|+.|.+|.++++|||+++|.+|++|++++++|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY   80 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence            578999999999999 9999999864              3899999999999999999999999999999999999999


Q ss_pred             CCCC
Q 008788          235 PSPL  238 (553)
Q Consensus       235 g~~~  238 (553)
                      |.++
T Consensus        81 Ge~~   84 (231)
T 3prb_A           81 GKRD   84 (231)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9753

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.52  E-value=4.7e-13  Score=118.52  Aligned_cols=84  Identities=13%  Similarity=0.060  Sum_probs=75.1

Q ss_pred             CCCCCCceEEEEEEEEeC-CCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCC
Q 008788          167 ETPRAPYEVKAWISAKTG-DGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGC  245 (553)
Q Consensus       167 ~~~~~gd~V~v~y~~~~~-~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~  245 (553)
                      +.++.||.|++||++++. +|++|+|+..++|+.|.+|.++++|||+++|.+|++|+++.|.|||+.+||.++       
T Consensus         5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~-------   77 (151)
T 2kr7_A            5 DLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE-------   77 (151)
T ss_dssp             CCTTSCCEEEEEEEEEESSCSCEEEESTTTCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC-------
T ss_pred             cCCCCCCEEEEEEEEEECCCCCEEEeCCCCcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC-------
Confidence            568899999999999987 999999998789999999999999999999999999999999999999999764       


Q ss_pred             ceEEEEEEEeee
Q 008788          246 EEVHFEVELVHL  257 (553)
Q Consensus       246 ~~l~~~v~l~~~  257 (553)
                      ..+++.+....|
T Consensus        78 ~~~v~~v~~~~f   89 (151)
T 2kr7_A           78 SSYLQEVPRDQF   89 (151)
T ss_dssp             SCEEEEEEGGGG
T ss_pred             cceEEEEcHHHc
Confidence            345666666555

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.51  E-value=3.2e-13  Score=120.20  Aligned_cols=77  Identities=18%  Similarity=0.315  Sum_probs=69.8

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~  124 (553)
                      +++||.|+++|+++ .||++|+||+         +.|.+|.+++++||+++|.+|++|++++|.|||+.|||..      
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~---------~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~------   66 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE---------LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPH------   66 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE---------EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCC------
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE---------EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCC------
Confidence            67899999999999 8999999774         8899999999999999999999999999999999999975      


Q ss_pred             CCCCCCCCeEEEEEEEEee
Q 008788          125 PSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       125 ~~~i~~~~~l~~~v~l~~~  143 (553)
                            +..+++.|.+..+
T Consensus        67 ------~~~lv~~v~~~~f   79 (158)
T 3cgm_A           67 ------DPEGVQVVPLSAF   79 (158)
T ss_dssp             ------CGGGEEEEEGGGS
T ss_pred             ------CcceEEEEEHHHC
Confidence                  4667888877666

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.50  E-value=1.2e-13  Score=122.98  Aligned_cols=113  Identities=14%  Similarity=0.105  Sum_probs=98.2

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      ....+...|+.+++.|+|++|+..|++|++    ++|.+           ..+|+++|.||.+++++++|+.++.+++++
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~   94 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYIN----VQERD-----------PKAHRFLGLLYELEENTDKAVECYRRSVEL   94 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence            344566889999999999999999999999    78877           679999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCChHHHHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRD-FEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~-l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      +|+++.+|+.+|.++..++++++|... +++|++++|+| +.+......+
T Consensus        95 ~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~-~~~~~l~~~l  143 (150)
T 4ga2_A           95 NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS-PAVYKLKEQL  143 (150)
T ss_dssp             CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC-HHHHHHHHHH
Confidence            999999999999999999999877665 69999999997 4455544433

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.49  E-value=3.9e-13  Score=120.40  Aligned_cols=83  Identities=18%  Similarity=0.256  Sum_probs=72.9

Q ss_pred             CCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCc
Q 008788          168 TPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE  246 (553)
Q Consensus       168 ~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~  246 (553)
                      .++.||.|++||++++.||++|+|+.. ++|+.|.+|.++++|||+++|.+|++||++.|.|||+++||+++       .
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~-------~   96 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPS-------P   96 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCC-------G
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC-------h
Confidence            588999999999999999999999864 58999999999999999999999999999999999999999764       3


Q ss_pred             eEEEEEEEeee
Q 008788          247 EVHFEVELVHL  257 (553)
Q Consensus       247 ~l~~~v~l~~~  257 (553)
                      .++..|....|
T Consensus        97 ~lv~~vp~~~f  107 (169)
T 4dt4_A           97 DLIQYFSRREF  107 (169)
T ss_dssp             GGEEEEEGGGG
T ss_pred             HHEEEeCHHHC
Confidence            44555555444

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.48  E-value=3.9e-14  Score=125.69  Aligned_cols=71  Identities=21%  Similarity=0.130  Sum_probs=65.5

Q ss_pred             CCCCceEEEEEEEEeCCCcEEeecCC--------------CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccC
Q 008788          169 PRAPYEVKAWISAKTGDGKLILSHRE--------------GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT  234 (553)
Q Consensus       169 ~~~gd~V~v~y~~~~~~g~~~~s~~~--------------~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~  234 (553)
                      ++.||.|++||++++ +|++|+||..              ++|+.|.+|.++++|||+++|.+|++||+++|+|||+++|
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY   80 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence            578999999999999 9999999864              3899999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 008788          235 PSPLMP  240 (553)
Q Consensus       235 g~~~~~  240 (553)
                      |++++.
T Consensus        81 G~~~~~   86 (157)
T 3pr9_A           81 GKRDPS   86 (157)
T ss_dssp             CCCCGG
T ss_pred             CCCChH
Confidence            977543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.46  E-value=1.2e-12  Score=109.22  Aligned_cols=114  Identities=26%  Similarity=0.461  Sum_probs=103.0

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..++..|+|.+|+..|++++.    ..|.+           ..+++++|.|+..+++|++|+..+.++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHN-----------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            467788999999999999999999999999    56655           568999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      +|++..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~  116 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN-PQLKEGLQNME  116 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHhh
Confidence            99999999999999999999999999999999999987 45666665554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.44  E-value=6.1e-12  Score=112.12  Aligned_cols=119  Identities=27%  Similarity=0.466  Sum_probs=107.1

Q ss_pred             hhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 008788          391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  470 (553)
Q Consensus       391 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  470 (553)
                      .......+..+...|..++..|+|.+|+..|.++++    ..|.+           ..+++++|.|+..+++|.+|+..+
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~   70 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRSLAYLRTECYGYALGDA   70 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence            356677899999999999999999999999999999    56655           578999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       471 ~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      .++++++|.++.+++.+|.++..+|++++|+..|+++++++|++. .+...+..+
T Consensus        71 ~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~~~~~  124 (166)
T 1a17_A           71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-DAKMKYQEC  124 (166)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-HHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Confidence            999999999999999999999999999999999999999999874 455444444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.43  E-value=5.7e-13  Score=113.94  Aligned_cols=99  Identities=11%  Similarity=0.025  Sum_probs=89.6

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      +...|..+++.|++.+|+..|++|++    .+|.+           ..+++++|.|+..+|++.+|+..+.++++++|++
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~   84 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQ----KEPER-----------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   84 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            45788899999999999999999999    78877           6789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      +.+++.+|.++..+|++++|+..|+++++++|++
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           85 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            9999999999999999999999999999999985

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.43  E-value=1.9e-13  Score=121.55  Aligned_cols=110  Identities=11%  Similarity=0.058  Sum_probs=92.4

Q ss_pred             hhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008788          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  483 (553)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka  483 (553)
                      .|..+..+|++++|+..|++|+.    ..|.+           ...++++|.+|+++++|++|+.+++++++++|+++.+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~----~~p~~-----------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a   67 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTP----SPRQK-----------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA   67 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSC----SHHHH-----------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcc----cCccc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            47778889999999999999887    33322           4567899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       484 ~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      |+.+|.++..+|++++|+..|++|++++|++ ..+...+..+-...
T Consensus        68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~  112 (150)
T 4ga2_A           68 HRFLGLLYELEENTDKAVECYRRSVELNPTQ-KDLVLKIAELLCKN  112 (150)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Confidence            9999999999999999999999999999997 45666666554443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.42  E-value=2.5e-12  Score=120.84  Aligned_cols=123  Identities=15%  Similarity=0.134  Sum_probs=99.5

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHH-----HHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-----VFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~-----~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  472 (553)
                      +..+..+|..++..|+|++|+..|+++++    .+|.+.+-.-     ........+++++|.|+.++|++++|+..+++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~   79 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIA----LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE   79 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            55677899999999999999999999999    5554411000     00011122334499999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       473 al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      +++++|+++.+++.+|.++..+|++++|+.+|+++++++|++ ..+...+..+
T Consensus        80 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~  131 (208)
T 3urz_A           80 LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-LAANIFLGNY  131 (208)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHH
Confidence            999999999999999999999999999999999999999997 4566555544

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.42  E-value=4.7e-13  Score=123.00  Aligned_cols=72  Identities=17%  Similarity=0.098  Sum_probs=67.8

Q ss_pred             CCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCC
Q 008788          169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP  240 (553)
Q Consensus       169 ~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~  240 (553)
                      +++||.|+|+|++++.+|++|+|+..++|++|.+|.++++|||+++|.+|++|++++|+|||+.+||++.+.
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~   74 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDEN   74 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECCTTSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTT
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecCCCCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCChh
Confidence            678999999999998899999999877999999999999999999999999999999999999999987544

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.41  E-value=1.8e-13  Score=121.19  Aligned_cols=73  Identities=15%  Similarity=0.162  Sum_probs=66.7

Q ss_pred             CCCCceEEEEEEEEeCCCcEEeecC--------------CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccC
Q 008788          169 PRAPYEVKAWISAKTGDGKLILSHR--------------EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT  234 (553)
Q Consensus       169 ~~~gd~V~v~y~~~~~~g~~~~s~~--------------~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~  234 (553)
                      ++.||.|++||++++.+|++|+||.              ..+|+.|.+|.++++|||+++|.+|++|++++++|||+.+|
T Consensus         2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY   81 (151)
T 1ix5_A            2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence            6789999999999988999999995              34799999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q 008788          235 PSPLMPV  241 (553)
Q Consensus       235 g~~~~~~  241 (553)
                      |++++..
T Consensus        82 G~~~~~~   88 (151)
T 1ix5_A           82 GNRNEML   88 (151)
T ss_dssp             CSCCSTT
T ss_pred             CCCCccE
Confidence            9875443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.41  E-value=9.7e-12  Score=105.55  Aligned_cols=120  Identities=26%  Similarity=0.388  Sum_probs=105.7

Q ss_pred             hhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  471 (553)
Q Consensus       392 ~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  471 (553)
                      +.....+..+...|..++..|+|.+|+..|++++.    ..|.+           ..++.++|.|+..++++++|+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~   70 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIE----LNPAN-----------AVYFCNRAAAYSKLGNYAGAVQDCE   70 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhhchHHHHHHHH
Confidence            34456788899999999999999999999999998    55655           5689999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788          472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       472 ~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~  527 (553)
                      +++..+|++..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~  125 (131)
T 2vyi_A           71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN-ETYKSNLKIAEL  125 (131)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHH
T ss_pred             HHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc-hHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987 445555555543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.40  E-value=7.3e-13  Score=117.40  Aligned_cols=104  Identities=19%  Similarity=0.253  Sum_probs=91.4

Q ss_pred             ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCC
Q 008788          410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC----------RKSIEACNKVLDANPA  479 (553)
Q Consensus       410 ~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~----------~~A~~~~~~al~~dp~  479 (553)
                      +.++|++|+..|++|++    ++|.+           ..+|+|+|.|++.++++          ++|+..|++||+++|+
T Consensus        14 r~~~feeA~~~~~~Ai~----l~P~~-----------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~   78 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYK----SNPLD-----------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK   78 (158)
T ss_dssp             HHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHhHHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence            44679999999999999    78887           67999999999999876          4999999999999999


Q ss_pred             CHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          480 HVKGLYRRGMAYMALG-----------EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       480 n~ka~~r~g~a~~~lg-----------~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      +..|||.+|.||..+|           +|++|+++|++|++++|++ ...++.++.+.+..
T Consensus        79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~-~~y~~al~~~~ka~  138 (158)
T 1zu2_A           79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN-THYLKSLEMTAKAP  138 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHTHH
T ss_pred             cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHhCH
Confidence            9999999999999985           8999999999999999997 45666666554443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=4.4e-12  Score=110.79  Aligned_cols=117  Identities=31%  Similarity=0.491  Sum_probs=103.1

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..++..|+|.+|+..|+++++    ..|.+.        ....+++++|.|++.+++|++|+..|.+++++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALG----LDATPQ--------DQAVLHRNRAACHLKLEDYDKAETEASKAIEK   94 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT----SCCCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----Hcccch--------HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            367788999999999999999999999998    555431        13578999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      +|+++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus        95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~  143 (148)
T 2dba_A           95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN-KVFQEALRNIS  143 (148)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHH
Confidence            99999999999999999999999999999999999997 45666665553

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.40  E-value=3.1e-12  Score=109.44  Aligned_cols=114  Identities=25%  Similarity=0.470  Sum_probs=102.5

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      ....+...|..++..|+|++|+..|+++++    ..|.+           ..+++++|.|+..++++++|+..+.+++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK----RNPKD-----------AKLYSNRAACYTKLLEFQLALKDCEECIQL   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            477788999999999999999999999998    56655           578999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      +|.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+.
T Consensus        80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~  128 (133)
T 2lni_A           80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC-KEAADGYQRCM  128 (133)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG-THHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc-hHHHHHHHHHH
Confidence            99999999999999999999999999999999999986 34555555543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.40  E-value=3.7e-12  Score=108.33  Aligned_cols=118  Identities=22%  Similarity=0.377  Sum_probs=105.2

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..++..|+|.+|+..|.+++.    ..|.+           ..+++++|.|+..+++|++|+.++.+++.+
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   67 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTN-----------MTYITNQAAVYFEKGDYNKCRELCEKAIEV   67 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh----cCCcc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            467788999999999999999999999999    55655           568999999999999999999999999999


Q ss_pred             CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 008788          477 NPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRK  531 (553)
Q Consensus       477 dp~n-------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~  531 (553)
                      +|.+       ..+++++|.++..+|++++|+..|++++++.|+  ..+...+..+...+.+
T Consensus        68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--PDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHH
Confidence            9877       999999999999999999999999999999994  4577777777666554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.39  E-value=2.8e-12  Score=142.68  Aligned_cols=104  Identities=17%  Similarity=0.269  Sum_probs=63.0

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+.+.|+.+.+.|+|++|+..|++||+    ++|.+           ..+|+|+|.+|.++|++++|+.++++||+
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~----l~P~~-----------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~   71 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEF-----------AAAHSNLASVLQQQGKLQEALMHYKEAIR   71 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4567777888888888888888888888887    56655           33455555555555555555555555555


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ++|+++.+|+++|.++..+|++++|++.|++|++++|++
T Consensus        72 l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~  110 (723)
T 4gyw_A           72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF  110 (723)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            555555555555555555555555555555555555544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.38  E-value=3e-12  Score=126.34  Aligned_cols=102  Identities=25%  Similarity=0.443  Sum_probs=96.7

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..++..|+.+++.|+|++|+..|++|+.    ..|.+           ..+++|+|.||+++++|++|+.++++|++++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~   68 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLV-----------AVYYTNRALCYLKMQQPEQALADCRRALELD   68 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999    67766           6789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      |++.++++++|.++..+|+|++|+..|+++++++|++
T Consensus        69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999999965

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.38  E-value=6.5e-12  Score=107.36  Aligned_cols=114  Identities=17%  Similarity=0.210  Sum_probs=97.8

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~  479 (553)
                      .+...|..++..|+|++|+..|+++++    ..|.+.        ....+++++|.|++++++|++|+..+.+++..+|+
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~   71 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLE----LYPNGV--------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT   71 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSST--------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH----HCCCCc--------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            355788899999999999999999998    566541        11368899999999999999999999999999999


Q ss_pred             C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          480 H---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       480 n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      +   +.+++.+|.++..+|++++|+..|+++++..|++. .+...+..+.
T Consensus        72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~a~~~l~  120 (129)
T 2xev_A           72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD-AARVAQERLQ  120 (129)
T ss_dssp             STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH-HHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHH
Confidence            9   89999999999999999999999999999999873 4544444443

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.35  E-value=1.4e-11  Score=109.63  Aligned_cols=78  Identities=14%  Similarity=0.046  Sum_probs=70.3

Q ss_pred             CCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCceE
Q 008788          169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEV  248 (553)
Q Consensus       169 ~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~~l  248 (553)
                      ++.||.|++||+++ .+|++|+|+.    +.|.+|.++++|||+++|.+|++||++.|.|||+.+||.+       +..+
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~-------~~~l   70 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE----LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPH-------DPEG   70 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE----EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCC-------CGGG
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE----EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCC-------Ccce
Confidence            67899999999999 9999999886    8999999999999999999999999999999999999976       3456


Q ss_pred             EEEEEEeeee
Q 008788          249 HFEVELVHLI  258 (553)
Q Consensus       249 ~~~v~l~~~~  258 (553)
                      ++.|.+..|.
T Consensus        71 v~~v~~~~f~   80 (158)
T 3cgm_A           71 VQVVPLSAFP   80 (158)
T ss_dssp             EEEEEGGGSC
T ss_pred             EEEEEHHHCC
Confidence            7777777763

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.32  E-value=9.7e-12  Score=132.21  Aligned_cols=116  Identities=27%  Similarity=0.458  Sum_probs=105.3

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      +.+..+...|+.+++.|+|++|+..|++|++    ..|.+           ..+++|+|.||+++++|++|+.++++|++
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   68 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRSLAYLRTECYGYALGDATRAIE   68 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            4577788999999999999999999999999    67766           67999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~  527 (553)
                      ++|+++.+++++|.+|..+|++++|++.|++|++++|++. .+...+..+..
T Consensus        69 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~l~~~~~  119 (477)
T 1wao_1           69 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-DAKMKYQECNK  119 (477)
T ss_dssp             SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT-THHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Confidence            9999999999999999999999999999999999999874 46666666533

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.32  E-value=1e-11  Score=117.33  Aligned_cols=100  Identities=26%  Similarity=0.354  Sum_probs=54.2

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~  479 (553)
                      .+...|..+++.|++++|+..|++|++    .+|.+           ..+++++|.++.++|++++|+..++++++++|+
T Consensus         7 ~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~   71 (217)
T 2pl2_A            7 NPLRLGVQLYALGRYDAALTLFERALK----ENPQD-----------PEALYWLARTQLKLGLVNPALENGKTLVARTPR   71 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT----TSSSC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            344556666666666666666666666    55554           334455555555555555555555555555555


Q ss_pred             CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCC
Q 008788          480 HVKGLYRRGMAYMAL-----------GEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       480 n~ka~~r~g~a~~~l-----------g~~~~A~~~l~~al~l~P~~  514 (553)
                      ++.+++.+|.++..+           |++++|+..|+++++++|++
T Consensus        72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~  117 (217)
T 2pl2_A           72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY  117 (217)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc
Confidence            555555555555555           55555555555555555543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.31  E-value=2.3e-11  Score=115.24  Aligned_cols=102  Identities=15%  Similarity=0.264  Sum_probs=95.2

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCC-CChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP-QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~-~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      ..+...|..++..|+|++|+..|+++++    ..| .+           ..+++++|.|+..+++|++|+.++.++++++
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   72 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLK----LTNNQD-----------SVTAYNCGVCADNIKKYKEAADYFDIAIKKN   72 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTTTCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHh----ccCCCC-----------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence            5678899999999999999999999999    555 44           4678889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      |++..+++.+|.++..+|++++|+..|+++++++|++.
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  110 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA  110 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence            99999999999999999999999999999999999974

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.31  E-value=1.2e-11  Score=127.59  Aligned_cols=115  Identities=8%  Similarity=0.042  Sum_probs=84.7

Q ss_pred             HHHHHhhhccccccCC-HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          398 AEKIRVTGNRLFKEGK-FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~-~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      +..+..+|..+...|+ |++|+..|++||.    ++|.+           ..+|+|+|.++.++++|.+|+.+|++||++
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~----l~P~~-----------~~a~~~~g~~~~~~g~~~eAl~~~~kal~l  195 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIE----EQPKN-----------YQVWHHRRVLVEWLRDPSQELEFIADILNQ  195 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3345556666666664 6666666666666    55555           567888888888888888888888888888


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      +|+|..+|+.+|.++..+|+|++|+.+|+++++++|++. .++..+..+...
T Consensus       196 dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~-~a~~~lg~~l~~  246 (382)
T 2h6f_A          196 DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN-SVWNQRYFVISN  246 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH-HHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Confidence            888888888888888888888888888888888888863 455555554443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.31  E-value=1.1e-11  Score=137.77  Aligned_cols=114  Identities=18%  Similarity=0.267  Sum_probs=104.1

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+.+.|+.+++.|++++|+..|++|++    ++|.+           ..+|+|+|.++..++++++|+.++++|++++
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~----l~P~~-----------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~  107 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIR----ISPTF-----------ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN  107 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            56678999999999999999999999999    78877           6799999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~  527 (553)
                      |+++.+|+++|.+|..+|++++|++.|++|++++|++ ..+...|..+..
T Consensus       108 P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-~~a~~~L~~~l~  156 (723)
T 4gyw_A          108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF-PDAYCNLAHCLQ  156 (723)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHhhhhhHHH
Confidence            9999999999999999999999999999999999997 456655555544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.31  E-value=2.3e-11  Score=114.20  Aligned_cols=110  Identities=15%  Similarity=0.184  Sum_probs=95.1

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k  482 (553)
                      ..|..+++.|+|++|+..|++|++    .+|.+           ..+++++|.++..+|++++|+.+++++++++|+++.
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~  123 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQ----KAPNN-----------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA  123 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            389999999999999999999999    78877           678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-----------------------------------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788          483 GLYRRGMAYMA-----------------------------------LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       483 a~~r~g~a~~~-----------------------------------lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~  527 (553)
                      +|+.+|.+|..                                   +++|++|+.+|++|++++|++  .+...|.++.+
T Consensus       124 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~--~~~~~l~~i~~  201 (208)
T 3urz_A          124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST--EAQKTLDKILR  201 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH--HHHHHHHHHHH
Confidence            88888776643                                   456899999999999999984  46666666654


Q ss_pred             HH
Q 008788          528 QR  529 (553)
Q Consensus       528 ~~  529 (553)
                      ..
T Consensus       202 ~~  203 (208)
T 3urz_A          202 IE  203 (208)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.30  E-value=3.9e-12  Score=107.64  Aligned_cols=94  Identities=20%  Similarity=0.177  Sum_probs=80.4

Q ss_pred             ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008788          410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  489 (553)
Q Consensus       410 ~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~  489 (553)
                      ..|+|++|+..|++|++    ..+.+.        ....+++++|.|+.++++|++|+..+.++++++|+++.+++.+|.
T Consensus         2 ~~g~~~~A~~~~~~al~----~~~~~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   69 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIA----SGLQGK--------DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM   69 (117)
T ss_dssp             -----CCCHHHHHHHHS----SCCCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHH----cCCCCc--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            35889999999999998    432111        126789999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          490 AYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       490 a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      ++..+|++++|+..|+++++++|++.
T Consensus        70 ~~~~~g~~~~A~~~~~~al~~~p~~~   95 (117)
T 3k9i_A           70 VLYNLGRYEQGVELLLKIIAETSDDE   95 (117)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence            99999999999999999999999873

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.28  E-value=1.2e-10  Score=97.67  Aligned_cols=113  Identities=27%  Similarity=0.490  Sum_probs=100.0

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..++..|++++|+..|.++++    ..|.+           ..+++++|.++..++++++|+..+.+++..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   73 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNN-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCc-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            55677889999999999999999999998    45544           5688999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      |.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus        74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~  121 (125)
T 1na0_A           74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNAK  121 (125)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence            9999999999999999999999999999999999987 44555554443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.28  E-value=2.4e-11  Score=125.27  Aligned_cols=118  Identities=9%  Similarity=0.017  Sum_probs=106.2

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEACNKVL  474 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~-~~~A~~~~~~al  474 (553)
                      ..+..+...|..+.+.|++++|+..|++||.    ++|.+           ..+|+++|.++..+++ +++|+.++++||
T Consensus        95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~----l~P~~-----------~~a~~~~g~~l~~~g~d~~eAl~~~~~al  159 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAAN-----------YTVWHFRRVLLKSLQKDLHEEMNYITAII  159 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCccC-----------HHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence            4577788899999999999999999999999    78877           6799999999999997 999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       475 ~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      +++|++..+|+.+|.++..+|++++|+.+|++|++++|+| ..++..+..+...+
T Consensus       160 ~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-~~a~~~lg~~~~~~  213 (382)
T 2h6f_A          160 EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-YHAWQHRQWVIQEF  213 (382)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-HHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999998 45666555554443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.27  E-value=2.7e-11  Score=99.92  Aligned_cols=100  Identities=14%  Similarity=0.193  Sum_probs=92.7

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~  479 (553)
                      .+...|..++..|+|.+|+..|+++++    ..|.+           ..+++++|.++..+++|++|+..++++++++|.
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQ----LDPEE-----------SKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHH----hCcCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            345788889999999999999999999    56655           568899999999999999999999999999999


Q ss_pred             --CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 008788          480 --HVKGLYRRGMAYMAL-GEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       480 --n~ka~~r~g~a~~~l-g~~~~A~~~l~~al~l~P~~  514 (553)
                        +..+++.+|.++..+ |++++|++.|+++++..|++
T Consensus        73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence              999999999999999 99999999999999999975

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.27  E-value=5.9e-11  Score=112.10  Aligned_cols=115  Identities=17%  Similarity=0.240  Sum_probs=91.9

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc-----------CCHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-----------GECRKS  466 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl-----------~~~~~A  466 (553)
                      +..+...|..+++.|++++|+..|++|++    .+|.+           ..+++++|.++.++           |++++|
T Consensus        39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A  103 (217)
T 2pl2_A           39 PEALYWLARTQLKLGLVNPALENGKTLVA----RTPRY-----------LGGYMVLSEAYVALYRQAEDRERGKGYLEQA  103 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHhhhhhhhhcccccCHHHH
Confidence            45677889999999999999999999999    77876           56778888888888           888888


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       467 ~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      +..++++++++|+++.+++.+|.++..+|++++|+..|++|++++ ++ ..+...+..+....
T Consensus       104 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~~la~~~~~~  164 (217)
T 2pl2_A          104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT-PEIRSALAELYLSM  164 (217)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc-hHHHHHHHHHHHHc
Confidence            888888888888888888888888888888888888888888888 54 45555555544433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.26  E-value=2.5e-11  Score=110.80  Aligned_cols=112  Identities=19%  Similarity=0.242  Sum_probs=66.5

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhH-----------------------HHHHhhhhhHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE-----------------------GKVFVGKRNLLHLNVA  454 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee-----------------------~~~~~~~~~~~~~nla  454 (553)
                      +..+...|..+++.|++++|+..+.+++.    ..|.+...                       ..........++.++|
T Consensus        39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg  114 (184)
T 3vtx_A           39 VETLLKLGKTYMDIGLPNDAIESLKKFVV----LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLG  114 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            44455666666666777777777666665    33333100                       0000111134566666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      .++.++|+|++|+..++++++++|.++.+|+.+|.+|..+|++++|+.+|++|++++|+
T Consensus       115 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          115 LVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence            66666666666666666666666666666666666666666666666666666666665

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.24  E-value=1.5e-10  Score=105.55  Aligned_cols=141  Identities=18%  Similarity=0.247  Sum_probs=104.0

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHH-----------------------HHHhhhhhHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------------KVFVGKRNLLHLNVA  454 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~-----------------------~~~~~~~~~~~~nla  454 (553)
                      +..+.+.|+.+++.|+|++|+..|++|++    .+|.+.+-.                       .........++.++|
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLK----ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG   80 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            55677899999999999999999999999    677663210                       011112234677778


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q 008788          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKV  534 (553)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~  534 (553)
                      .++...+++..|+..+.+++.++|.+..+++.+|.++..+|+|++|++.|+++++++|++ ..+...+..+-......++
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF-IRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh-hhHHHHHHHHHHHCCCHHH
Confidence            888888888888888888888888889999999999999999999999999999999987 4566666666555443332


Q ss_pred             HHHHHHHhhc
Q 008788          535 RLENSLKGCL  544 (553)
Q Consensus       535 ~~~~~~~~mf  544 (553)
                       -...|.+.+
T Consensus       160 -A~~~~~~al  168 (184)
T 3vtx_A          160 -AVKYFKKAL  168 (184)
T ss_dssp             -HHHHHHHHH
T ss_pred             -HHHHHHHHH
Confidence             233444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.23  E-value=1.4e-10  Score=105.26  Aligned_cols=103  Identities=11%  Similarity=0.191  Sum_probs=95.2

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHH-HHHcCCH--HHHHHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC-LLKLGEC--RKSIEACNKVL  474 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~-~~kl~~~--~~A~~~~~~al  474 (553)
                      +..+...|..++..|+|.+|+..|.+|+.    ..|.+           ..++.++|.+ ++..+++  ++|+..+.+++
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al  108 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQ----LRGEN-----------AELYAALATVLYYQASQHMTAQTRAMIDKAL  108 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHCSC-----------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            45677899999999999999999999999    55655           5688999999 8899999  99999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       475 ~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      +++|++..+++.+|.++..+|++++|+..|+++++++|++.
T Consensus       109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            99999999999999999999999999999999999999873

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.22  E-value=2.4e-11  Score=126.38  Aligned_cols=87  Identities=17%  Similarity=0.281  Sum_probs=79.1

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~  124 (553)
                      ++.||.|++||+++ .||+.|++++      +.|+.|.+|.|+++|||+.+|.||++|+++.|.||+..+||..+.+   
T Consensus       158 ~~~gD~V~i~y~g~-~dG~~fd~~~------~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~la---  227 (432)
T 1w26_A          158 VEAEDRVTIDFTGS-VDGEEFEGGK------ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLK---  227 (432)
T ss_dssp             CCTTCEEEECEEEE-SSSCBCSSCC------CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTTS---
T ss_pred             CCCCCEEEEEEEEe-eCCeEccCCC------ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCCC---
Confidence            79999999999999 5999999775      4689999999999999999999999999999999999999976643   


Q ss_pred             CCCCCCCCeEEEEEEEEeeeccc
Q 008788          125 PSTFPKDEELHFEIEMIDFAKAK  147 (553)
Q Consensus       125 ~~~i~~~~~l~~~v~l~~~~~~~  147 (553)
                            |.+++|+|+|.++....
T Consensus       228 ------g~~~~F~V~v~~v~~~~  244 (432)
T 1w26_A          228 ------GKAAKFAINLKKVEERE  244 (432)
T ss_dssp             ------SCEEEEEEECCEECCEE
T ss_pred             ------CceEEEEEEEEEEeccC
Confidence                  79999999999997543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.20  E-value=2.3e-10  Score=108.26  Aligned_cols=112  Identities=15%  Similarity=0.162  Sum_probs=98.5

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp  478 (553)
                      ..+...|..++..|+|++|+..|++|++    ..|.+           ..++.++|.|+..++++++|+..++++++++|
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  107 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIK----KNYNL-----------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP  107 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCSH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHH----hCcch-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence            3455689999999999999999999998    66755           67899999999999999999999999999999


Q ss_pred             CCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHH
Q 008788          479 AHV-------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS--SEPDATAALSKLK  526 (553)
Q Consensus       479 ~n~-------ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~--~~~~~~~~l~~l~  526 (553)
                      ++.       .+|+.+|.++..+|++++|+..|++|++++|+  + ..+...+..+.
T Consensus       108 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~  163 (228)
T 4i17_A          108 GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK-TDALYSLGVLF  163 (228)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH-HHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHH
Confidence            999       77999999999999999999999999999998  5 34554444443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.20  E-value=2.7e-10  Score=114.31  Aligned_cols=122  Identities=23%  Similarity=0.415  Sum_probs=106.2

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~  479 (553)
                      .....|..+++.|++++|+..|++++.    ..|.+..       ....++.++|.|+.+++++++|+..++++++.+|+
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  304 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMK----TEPSVAE-------YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD  304 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSSHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCchH-------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            345668899999999999999999999    5665421       23457889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 008788          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLK  533 (553)
Q Consensus       480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~  533 (553)
                      ++.+++.+|.++..+|++++|+..|+++++++|++ ..++..+..+...+++.+
T Consensus       305 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~  357 (359)
T 3ieg_A          305 NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND-QQIREGLEKAQRLLKQSQ  357 (359)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999997 468888888877766543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.17  E-value=1e-11  Score=102.94  Aligned_cols=95  Identities=29%  Similarity=0.427  Sum_probs=79.1

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..++..|+|++|+..|++|++    ..|.+           ..+++|+|.|++++++|++|+.+|++++++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT----AQPQN-----------PVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            356677888888889999999999999888    56655           567888999999999999999999999999


Q ss_pred             CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788          477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEM  506 (553)
Q Consensus       477 dp~n------~ka~~r~g~a~~~lg~~~~A~~~l~~  506 (553)
                      +|++      .++++++|.++..+|+++.|+..|++
T Consensus        68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            9888      88889999998888888877766553

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.16  E-value=3.1e-10  Score=120.17  Aligned_cols=117  Identities=25%  Similarity=0.386  Sum_probs=104.3

Q ss_pred             HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (553)
Q Consensus       394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (553)
                      +.+.+..+...|+.+++.|+|.+|+..|++++.    ..| +           ..+++++|.|++++|+|++|+..++++
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p-~-----------~~~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALE----LKE-D-----------PVFYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----HCC-C-----------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHh----cCc-c-----------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            456789999999999999999999999999999    455 3           468999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       474 l~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      ++++|++..+++.+|.++..+|++++|+..|+++++++|.+.......+..+.
T Consensus        66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (514)
T 2gw1_A           66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL  118 (514)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHH
T ss_pred             hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999976554444444443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.16  E-value=2.8e-10  Score=108.67  Aligned_cols=112  Identities=26%  Similarity=0.410  Sum_probs=96.4

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..++..|+|++|+..|++++.    ..|.+           ..+++++|.|+.+++++++|+..++++++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  202 (258)
T 3uq3_A          138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPED-----------ARGYSNRAAALAKLMSFPEAIADCNKAIEK  202 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHh----cCccc-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            455677889999999999999999999998    56655           568899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD------KSSEPDATAALSK  524 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~------P~~~~~~~~~l~~  524 (553)
                      +|+++.+++.+|.++..+|++++|+..|+++++++      |++ ..+...+..
T Consensus       203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~-~~~~~~l~~  255 (258)
T 3uq3_A          203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA-REIDQLYYK  255 (258)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCch-HHHHHHHHH
Confidence            99999999999999999999999999999999999      775 446555544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.15  E-value=2.5e-10  Score=106.50  Aligned_cols=101  Identities=9%  Similarity=0.091  Sum_probs=66.8

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp  478 (553)
                      ..+...|..+++.|+|++|+..|++|+.    ..|.+           ..+++++|.|+..+++|++|+.++++++++.|
T Consensus        38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~~~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  102 (213)
T 1hh8_A           38 RICFNIGCMYTILKNMTEAEKAFTRSIN----RDKHL-----------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  102 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccc-----------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Confidence            3455666666666666666666666666    34443           45666777777777777777777777777666


Q ss_pred             CCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          479 AHV----------------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       479 ~n~----------------ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      .+.                .+++.+|.++..+|++++|+..|+++++++|++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          103 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            555                667777777777777777777777777776653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.15  E-value=3.6e-10  Score=105.39  Aligned_cols=102  Identities=15%  Similarity=0.233  Sum_probs=92.9

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+...|+.++..|+|++|+..|++++.      + +           ..+++++|.|+.++++|++|+.++.++++
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------~-~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   65 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQD------P-H-----------SRICFNIGCMYTILKNMTEAEKAFTRSIN   65 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS------C-C-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC------C-C-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3456678899999999999999999999853      1 2           46899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      ++|.++.+++.+|.++..+|+|++|+..|++++++.|.+.
T Consensus        66 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence            9999999999999999999999999999999999998753

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.15  E-value=1.1e-09  Score=105.91  Aligned_cols=105  Identities=21%  Similarity=0.241  Sum_probs=98.1

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+...|..++..|++++|+..|++|++    ..|.+           ..++.++|.++..+++|++|+.++.++++
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~  105 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALA----IRPDM-----------PEVFNYLGIYLTQAGNFDAAYEAFDSVLE  105 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            3567788899999999999999999999999    56765           56899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      ++|.+..+++.+|.++..+|++++|+..|+++++++|++.
T Consensus       106 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A          106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            9999999999999999999999999999999999999974

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.13  E-value=9.4e-11  Score=104.27  Aligned_cols=84  Identities=8%  Similarity=-0.021  Sum_probs=75.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      ...++++|.+++++|+|++|+..|++++.++|+++.+|+.+|.++..+|+|++|+..|++|++++|++ ..+...+..+.
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-~~~~~~lg~~~  114 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-YTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-cHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999997 45666666665


Q ss_pred             HHHHH
Q 008788          527 KQRRK  531 (553)
Q Consensus       527 ~~~~~  531 (553)
                      ..+..
T Consensus       115 ~~lg~  119 (151)
T 3gyz_A          115 LRLKA  119 (151)
T ss_dssp             HHTTC
T ss_pred             HHcCC
Confidence            54433

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.12  E-value=4.7e-10  Score=96.35  Aligned_cols=84  Identities=15%  Similarity=0.164  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      ...+.|+|.++++.|+|++|+.+++++|+++|.++.+|+.+|.++..+|++++|+.+|++|++++|++ ..+...+..+.
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~   91 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999997 45666666665


Q ss_pred             HHHHH
Q 008788          527 KQRRK  531 (553)
Q Consensus       527 ~~~~~  531 (553)
                      ..+..
T Consensus        92 ~~~~~   96 (126)
T 4gco_A           92 VAMRE   96 (126)
T ss_dssp             HHTTC
T ss_pred             HHCCC
Confidence            55443

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.12  E-value=5.5e-11  Score=122.02  Aligned_cols=90  Identities=18%  Similarity=0.303  Sum_probs=78.5

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~  124 (553)
                      ++.||.|++||+++ .||+.|+++.      +.|+.|.+|.|+++|||+.+|.||++|++++|.|+....||..+.    
T Consensus       161 ~~~gD~V~i~y~g~-~dG~~fd~~~------~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~l----  229 (392)
T 1t11_A          161 AENGKRVSIDFVGS-IDGVEFEGGK------AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL----  229 (392)
T ss_dssp             CCTTCEEEEEEEEE-SSSSCCTTCE------EEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT----
T ss_pred             CCCCCEEEEEEEEE-ECCEEccCCC------ccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCCC----
Confidence            78999999999999 5999999774      469999999999999999999999999999999986678886654    


Q ss_pred             CCCCCCCCeEEEEEEEEeeecccccc
Q 008788          125 PSTFPKDEELHFEIEMIDFAKAKIIA  150 (553)
Q Consensus       125 ~~~i~~~~~l~~~v~l~~~~~~~~~~  150 (553)
                           +|.+++|+|+|.++.....+.
T Consensus       230 -----aGk~~~F~V~v~~i~~~~lpe  250 (392)
T 1t11_A          230 -----KGKAAKFAIKVNKVEARELPE  250 (392)
T ss_dssp             -----SSCEEEECCCEEEEEEEECCC
T ss_pred             -----CCCeEEEEEEEEEEEcCCCCC
Confidence                 389999999999997654333

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.12  E-value=9.7e-10  Score=92.15  Aligned_cols=83  Identities=14%  Similarity=0.195  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 008788          416 LAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG  495 (553)
Q Consensus       416 ~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg  495 (553)
                      .|+..|+++++    ..|.+           ..+++++|.+++.+++|++|+..+.++++++|.+..+|+.+|.++..+|
T Consensus         3 ~a~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   67 (115)
T 2kat_A            3 AITERLEAMLA----QGTDN-----------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG   67 (115)
T ss_dssp             CHHHHHHHHHT----TTCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence            57889999998    67766           5789999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 008788          496 EFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       496 ~~~~A~~~l~~al~l~P~  513 (553)
                      ++++|+..|+++++++|.
T Consensus        68 ~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           68 DRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccc
Confidence            999999999999999885

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.11  E-value=5.3e-10  Score=121.32  Aligned_cols=116  Identities=14%  Similarity=0.090  Sum_probs=104.2

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..++..|+|++|+..|++|++    ..|.+           ..+++++|.+|..++++++|+.+++++++++
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   87 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLA----LHPGH-----------PEAVARLGRVRWTQQRHAEAAVLLQQASDAA   87 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHT----TSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            56678899999999999999999999999    67766           5789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      |++..+++.+|.++..+|++++|++.|+++++++|++ ..+...+..+....
T Consensus        88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           88 PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE-PYITAQLLNWRRRL  138 (568)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999987 45666666655544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.10  E-value=1.5e-09  Score=102.85  Aligned_cols=106  Identities=20%  Similarity=0.295  Sum_probs=93.3

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..+++.|+|++|+..|+++++    ..|.+..        ...+++++|.|++++++|++|+..++++++.+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~----~~p~~~~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   71 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDN----RYPFGPY--------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   71 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTSTT--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCChH--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            45567889999999999999999999998    5554421        24688999999999999999999999999999


Q ss_pred             CCCHH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCh
Q 008788          478 PAHVK---GLYRRGMAYMA------------------LGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       478 p~n~k---a~~r~g~a~~~------------------lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      |++..   |+|.+|.++..                  +|++++|+..|+++++.+|++.
T Consensus        72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~  130 (225)
T 2yhc_A           72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ  130 (225)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred             cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence            99876   89999999987                  5799999999999999999974

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.10  E-value=6.4e-10  Score=118.09  Aligned_cols=117  Identities=10%  Similarity=0.056  Sum_probs=103.0

Q ss_pred             HHHHhhhcccccc---------CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc--------C
Q 008788          399 EKIRVTGNRLFKE---------GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--------G  461 (553)
Q Consensus       399 ~~~k~~G~~~~~~---------g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl--------~  461 (553)
                      ..+...|..++..         |+|++|+..|++|++    +.|.+           ..+++++|.+|+.+        +
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ----MDVLD-----------GRSWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHHHHhhccccc
Confidence            4566778888888         999999999999999    67766           57899999999999        9


Q ss_pred             CHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 008788          462 ECRKSIEACNKVLDANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRK  531 (553)
Q Consensus       462 ~~~~A~~~~~~al~~dp---~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~  531 (553)
                      +|++|+.++++|++++|   .++.+|+.+|.+|..+|+|++|++.|++|++++|++ ..++..+..+...+..
T Consensus       236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~a~~~l~~~~~~lg~  307 (474)
T 4abn_A          236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW-PEPQQREQQLLEFLSR  307 (474)
T ss_dssp             HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHH
Confidence            99999999999999999   999999999999999999999999999999999997 4566666655554443

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.09  E-value=2.4e-10  Score=118.85  Aligned_cols=86  Identities=17%  Similarity=0.162  Sum_probs=78.2

Q ss_pred             CCCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCc
Q 008788          167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE  246 (553)
Q Consensus       167 ~~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~  246 (553)
                      ..++.||.|++||+++ .||+.|+++. +.|+.|.+|.++++|||+++|.||++|+++.|.+|+..+||...    .+++
T Consensus       156 ~~~~~gD~V~i~y~g~-~dG~~fd~~~-~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~----lag~  229 (432)
T 1w26_A          156 GAVEAEDRVTIDFTGS-VDGEEFEGGK-ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAEN----LKGK  229 (432)
T ss_dssp             SCCCTTCEEEECEEEE-SSSCBCSSCC-CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTT----TSSC
T ss_pred             CCCCCCCEEEEEEEEe-eCCeEccCCC-ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCC----CCCc
Confidence            5689999999999998 5999999876 78999999999999999999999999999999999999999653    2568


Q ss_pred             eEEEEEEEeeee
Q 008788          247 EVHFEVELVHLI  258 (553)
Q Consensus       247 ~l~~~v~l~~~~  258 (553)
                      +++|+|+|+++.
T Consensus       230 ~~~F~V~v~~v~  241 (432)
T 1w26_A          230 AAKFAINLKKVE  241 (432)
T ss_dssp             EEEEEEECCEEC
T ss_pred             eEEEEEEEEEEe
Confidence            999999999985

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.07  E-value=2.3e-09  Score=103.65  Aligned_cols=106  Identities=12%  Similarity=0.211  Sum_probs=95.0

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..+++.|+|++|+..|+++++    ..|.+.        ....+++++|.|++++++|.+|+..++++++.+
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~p~~~--------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   82 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFT----YGRTHE--------WAADAQFYLARAYYQNKEYLLAASEYERFIQIY   82 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGG----GCSCST--------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCCCCc--------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence            56778999999999999999999999998    566542        125689999999999999999999999999998


Q ss_pred             CCC---HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCh
Q 008788          478 PAH---VKGLYRRGMAYMA--------LGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       478 p~n---~ka~~r~g~a~~~--------lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      |++   ..++|.+|.++..        +|++++|+..|+++++++|++.
T Consensus        83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence            854   6799999999999        9999999999999999999874

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.07  E-value=2e-09  Score=91.19  Aligned_cols=111  Identities=25%  Similarity=0.441  Sum_probs=95.9

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~  479 (553)
                      .+...|..++..|++++|+..|.++++    ..|.+           ..++.++|.++...+++++|+..+.+++..+|.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   67 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALE----LDPRS-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR   67 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHH----cCCcc-----------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            355678888999999999999999998    45544           467889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      +..+++.+|.++...|++++|+..|++++++.|.+ ..+...+..+.
T Consensus        68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~  113 (136)
T 2fo7_A           68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAY  113 (136)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHH
Confidence            99999999999999999999999999999999986 34544444443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.06  E-value=2.2e-09  Score=102.41  Aligned_cols=102  Identities=24%  Similarity=0.363  Sum_probs=94.3

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+...|..++..|+|++|+..|+++++.    . .+           ..+++++|.|+..+++|++|+..+.++++
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~----~-~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~   66 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL----H-KD-----------ITYLNNRAAAEYEKGEYETAISTLNDAVE   66 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----S-CC-----------THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----h-cc-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            46788999999999999999999999999993    3 33           56899999999999999999999999999


Q ss_pred             hCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          476 ANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       476 ~dp~n-------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      ++|.+       +.+++.+|.++..+|++++|+..|+++++++|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  111 (258)
T 3uq3_A           67 QGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT  111 (258)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             hCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch
Confidence            99877       799999999999999999999999999999886

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.06  E-value=1.2e-09  Score=115.87  Aligned_cols=115  Identities=13%  Similarity=0.117  Sum_probs=103.3

Q ss_pred             HHHHHhhhccccccCCH-HHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          398 AEKIRVTGNRLFKEGKF-ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~-~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      +..+...|..++..|+| ++|+..|++|++    .+|.+           ..+++++|.||+++++|++|+.++.+++++
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  166 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVK----LEPEL-----------VEAWNQLGEVYWKKGDVTSAHTCFSGALTH  166 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            56678899999999999 999999999999    67766           678999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMAL---------GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~l---------g~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      +|+ ..+++.+|.++..+         |++++|+..|++|++++|++ ..++..+..+....
T Consensus       167 ~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~  226 (474)
T 4abn_A          167 CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-GRSWYILGNAYLSL  226 (474)
T ss_dssp             CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred             CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH
Confidence            998 79999999999999         99999999999999999997 45666666655444

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.06  E-value=3.6e-09  Score=102.32  Aligned_cols=105  Identities=21%  Similarity=0.306  Sum_probs=94.0

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH--------cCCHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK--------LGECRKSIEA  469 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k--------l~~~~~A~~~  469 (553)
                      ...+...|..+++.|+|.+|+..|+++++    ..|.+..        ...+++++|.|+++        ++++.+|+..
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~----~~p~~~~--------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~  119 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQ----IYQIDPR--------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEA  119 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCTT--------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHH----HCCCCch--------hHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            56677899999999999999999999999    5665421        24689999999999        9999999999


Q ss_pred             HHHHHhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          470 CNKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       470 ~~~al~~dp~n~ka~-----------------~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ++++++.+|++..+.                 +.+|.+|..+|+|++|+..|+++++..|++
T Consensus       120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  181 (261)
T 3qky_A          120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT  181 (261)
T ss_dssp             HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence            999999999987666                 999999999999999999999999999985

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.05  E-value=5e-10  Score=101.52  Aligned_cols=129  Identities=11%  Similarity=0.074  Sum_probs=100.1

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      +...++.++..|+|++|+..|++++.    ..|.+           ..+++++|.+++.+++|++|+.++.++++++|++
T Consensus        13 ~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   77 (177)
T 2e2e_A           13 QRDPLHQFASQQNPEAQLQALQDKIR----ANPQN-----------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN   77 (177)
T ss_dssp             SSTTTCCCC-----CCCCHHHHHHHH----HCCSC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC
T ss_pred             HhhhhhhhhhccCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            34567888999999999999999999    67766           5689999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008788          481 VKGLYRRGMA-YMALGEF--EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTR  546 (553)
Q Consensus       481 ~ka~~r~g~a-~~~lg~~--~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~  546 (553)
                      +.+++.+|.+ +...|++  ++|+..|+++++++|++ ..+...+..+........ +....|.+.+..
T Consensus        78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~-~A~~~~~~al~~  144 (177)
T 2e2e_A           78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE-ITALMLLASDAFMQANYA-QAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHH-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcccHH-HHHHHHHHHHhh
Confidence            9999999999 8899999  99999999999999997 445555555544433222 233344444443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.05  E-value=3.6e-09  Score=95.18  Aligned_cols=116  Identities=19%  Similarity=0.253  Sum_probs=98.4

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      ...+...|..++..|++++|+..|+++++    ..|.+           ..++.++|.++..++++++|+..+.+++..+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  106 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLA----DAPDN-----------VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN  106 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            34566788888889999999999999988    45544           5688999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      |.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+....
T Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~  157 (186)
T 3as5_A          107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE-GKVHRAIAFSYEQM  157 (186)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred             cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999986 44555555554443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.04  E-value=3e-09  Score=110.85  Aligned_cols=119  Identities=24%  Similarity=0.423  Sum_probs=103.2

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~  479 (553)
                      .....|..+++.|++++|+..|+++++    ..|.+..       ....++.++|.++.++|++++|+..++++++++|+
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  327 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMK----TEPSIAE-------YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD  327 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH----HCCSSHH-------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcchH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            345569999999999999999999999    5665521       22468899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008788          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRR  530 (553)
Q Consensus       480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~  530 (553)
                      ++.+|+.+|.++..+|++++|+..|+++++++|++ ..+...+..+.....
T Consensus       328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~  377 (450)
T 2y4t_A          328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND-QQIREGLEKAQRLLK  377 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999997 567777776655543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.04  E-value=1e-09  Score=117.06  Aligned_cols=113  Identities=28%  Similarity=0.491  Sum_probs=99.8

Q ss_pred             CCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 008788          387 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  466 (553)
Q Consensus       387 ~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A  466 (553)
                      ..++..++...+..+...|+.+++.|+|++|+..|++++.    ..|.+           ..+++++|.|++++|+|++|
T Consensus        14 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A   78 (537)
T 3fp2_A           14 KGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE----LDPNE-----------PVFYSNISACYISTGDLEKV   78 (537)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHH
T ss_pred             cCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh----hCCCC-----------cHHHHHHHHHHHHcCCHHHH
Confidence            3567788888999999999999999999999999999999    67766           67899999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       467 ~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      +..|+++++++|+++.+++.+|.++..+|++++|+..|+ ++.++|+..
T Consensus        79 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~  126 (537)
T 3fp2_A           79 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD  126 (537)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC------
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC
Confidence            999999999999999999999999999999999999996 999998753

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.04  E-value=4.1e-10  Score=99.65  Aligned_cols=81  Identities=10%  Similarity=0.030  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      ...++++|.+++..|+|++|+..+.+++.++|.++.+|+.+|.++..+|+|++|+..|++|++++|++. .+...+..+.
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~lg~~~   99 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP-RFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-hHHHHHHHHH
Confidence            568899999999999999999999999999999999999999999999999999999999999999974 4555555444


Q ss_pred             HH
Q 008788          527 KQ  528 (553)
Q Consensus       527 ~~  528 (553)
                      ..
T Consensus       100 ~~  101 (148)
T 2vgx_A          100 LQ  101 (148)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.02  E-value=3.4e-10  Score=125.69  Aligned_cols=105  Identities=16%  Similarity=0.151  Sum_probs=70.6

Q ss_pred             HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008788          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (553)
Q Consensus       402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~  481 (553)
                      ...|..++..|+|++|+..|++|++    ++|.+           ..+++|+|.|+.++|+|++ +.+|++|++++|+++
T Consensus       471 ~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~-----------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~  534 (681)
T 2pzi_A          471 WYRAVAELLTGDYDSATKHFTEVLD----TFPGE-----------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVI  534 (681)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH----HSTTC-----------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchH
Confidence            3444444444444444444444444    33333           4577788888888888888 888888888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (553)
Q Consensus       482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~  523 (553)
                      .+|+++|.++..+|++++|+++|++|++++|++ ..++..+.
T Consensus       535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~~~  575 (681)
T 2pzi_A          535 SAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF-TTARLTSA  575 (681)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc-HHHHHHHH
Confidence            888888888888888888888888888888875 33443333

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.01  E-value=3.6e-09  Score=105.98  Aligned_cols=109  Identities=20%  Similarity=0.382  Sum_probs=99.1

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      ++.+...|+.++..|+|++|+..|+++++    ..|.+           ..+++++|.|++.++++++|+..+.++++++
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   67 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDN-----------YIAYYRRATVFLAMGKSKAALPDLTKVIALK   67 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCccc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            56778899999999999999999999999    66665           5689999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK---SSEPDATAAL  522 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P---~~~~~~~~~l  522 (553)
                      |++..+++.+|.++..+|++++|+..|+++++++|   ++ ..+...+
T Consensus        68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l  114 (359)
T 3ieg_A           68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE-KEAESQL  114 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH-HHHHHHH
T ss_pred             CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh-HHHHHHH
Confidence            99999999999999999999999999999999999   64 3444444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.01  E-value=3.6e-09  Score=89.59  Aligned_cols=100  Identities=26%  Similarity=0.490  Sum_probs=90.8

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp  478 (553)
                      ..+...|..++..|++++|+..|.+++.    ..|.+           ..+++++|.++..++++++|+..+.+++..+|
T Consensus        36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  100 (136)
T 2fo7_A           36 EAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPRS-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  100 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHH----HCCCc-----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            3455678888899999999999999998    45544           46788999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       479 ~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      .+..+++.+|.++..+|++++|+..|+++++++|+
T Consensus       101 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            99999999999999999999999999999999986

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.01  E-value=5.4e-10  Score=124.10  Aligned_cols=115  Identities=15%  Similarity=0.123  Sum_probs=102.3

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp  478 (553)
                      ..+...|..+++.|+|++|+..|++|++    .+|.+           ..+++++|.+++++++|++|+.++++|++++|
T Consensus       434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  498 (681)
T 2pzi_A          434 ELPLMEVRALLDLGDVAKATRKLDDLAE----RVGWR-----------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFP  498 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHCCC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHhc----cCcch-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4566788999999999999999999999    67776           67999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008788          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRR  530 (553)
Q Consensus       479 ~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~  530 (553)
                      +++.+|+.+|.++..+|+|++ +++|++|++++|++ ..+...+..+.....
T Consensus       499 ~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~-~~a~~~lg~~~~~~g  548 (681)
T 2pzi_A          499 GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV-ISAAFGLARARSAEG  548 (681)
T ss_dssp             TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC-HHHHHHHHHHHHHTT
T ss_pred             CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch-HHHHHHHHHHHHHcC
Confidence            999999999999999999999 99999999999997 456655655554443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.00  E-value=3.1e-09  Score=95.57  Aligned_cols=114  Identities=18%  Similarity=0.198  Sum_probs=100.1

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..++..|++.+|+..|++++.    ..|.+           ..++.++|.++..++++++|+..+.++++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   71 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYD----ADAFD-----------VDVALHLGIAYVKTGAVDRGTELLERSLAD   71 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCC----TTSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCccC-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            466778899999999999999999999887    55554           568899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      +|.+..+++.+|.++...|++++|+..|+++++++|.+ ..+...+..+.
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~  120 (186)
T 3as5_A           72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-FNVRFRLGVAL  120 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-HHHHHHHHHHH
Confidence            99999999999999999999999999999999999986 34544444443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.00  E-value=2e-09  Score=109.19  Aligned_cols=102  Identities=23%  Similarity=0.409  Sum_probs=86.9

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..++..|++++|+..|+++++    ..|.+           ..+++++|.++.++|++++|+..+.++++++
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  277 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALT----VRPED-----------YSLWNRLGATLANGDRSEEAVEAYTRALEIQ  277 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            34456778888888888888888888888    56655           5688899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      |+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus       278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999998763

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.99  E-value=7e-09  Score=98.12  Aligned_cols=102  Identities=16%  Similarity=0.124  Sum_probs=57.8

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..++..|++++|+..|+++++    ..|.+           ..++.++|.++..++++++|+..+.++++.+
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  121 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALE----LDSSA-----------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG  121 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCcc-----------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            34455667777777777777777777776    33433           3344555555555555555555555555555


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      |.+..+++.+|.++..+|++++|+..|+++++++|++
T Consensus       122 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  158 (243)
T 2q7f_A          122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND  158 (243)
T ss_dssp             CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            5555555555555555555555555555555555543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.98  E-value=2.4e-09  Score=101.40  Aligned_cols=114  Identities=19%  Similarity=0.263  Sum_probs=83.9

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..++..|+|++|+..|+++++    ..|.+           ..++.++|.++.+++++++|+..+.++++.
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   86 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE----ENKED-----------AIPYINFANLLSSVNELERALAFYDKALEL   86 (243)
T ss_dssp             --------------------CCTTHHHHHT----TCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            366677899999999999999999999998    66655           568999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      +|.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+.
T Consensus        87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~  135 (243)
T 2q7f_A           87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-GDLFYMLGTVL  135 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-HHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            99999999999999999999999999999999999986 34554444443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.98  E-value=3.4e-09  Score=107.43  Aligned_cols=111  Identities=16%  Similarity=0.108  Sum_probs=92.2

Q ss_pred             hhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008788          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  483 (553)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka  483 (553)
                      .|..+...|++++|+..|++++.    ..|...         ...+++++|.++.+++++++|+..+.++++++|+++.+
T Consensus       183 l~~~~~~~g~~~~A~~~~~~al~----~~p~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  249 (365)
T 4eqf_A          183 MSKSPVDSSVLEGVKELYLEAAH----QNGDMI---------DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL  249 (365)
T ss_dssp             ------CCHHHHHHHHHHHHHHH----HSCSSC---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHH----hCcCcc---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            48888899999999999999999    566510         15689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       484 ~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      |+.+|.++..+|++++|+..|+++++++|++ ..+...+..+...
T Consensus       250 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~  293 (365)
T 4eqf_A          250 WNRLGATLANGDRSEEAVEAYTRALEIQPGF-IRSRYNLGISCIN  293 (365)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHH
Confidence            9999999999999999999999999999997 4455555554443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.98  E-value=8.8e-09  Score=101.88  Aligned_cols=69  Identities=22%  Similarity=0.248  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCh
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEE-AQRDFEMMMKVDKSSE  515 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~-A~~~l~~al~l~P~~~  515 (553)
                      ..+++++|.|++++|+|++|+..++++|+++|+++.+++++|.++..+|++++ |.+.++++++++|++.
T Consensus       200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~  269 (291)
T 3mkr_A          200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP  269 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence            45788889999999999999999999999999999999999998988988876 5678888999999873

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.98  E-value=3.3e-09  Score=107.31  Aligned_cols=102  Identities=22%  Similarity=0.363  Sum_probs=90.4

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..+++.|++++|+..|++++.    ..|.+           ..+++++|.++.++|++++|+..++++++++
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  281 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALS----VRPND-----------YLLWNKLGATLANGNQSEEAVAAYRRALELQ  281 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44566788888899999999999999998    56655           5688999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      |++..+++.+|.++..+|++++|+..|+++++++|++
T Consensus       282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999998876

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.97  E-value=3.2e-09  Score=102.61  Aligned_cols=118  Identities=15%  Similarity=0.154  Sum_probs=77.5

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChh----------------H-H----HHH-----hhhhhHHHHHHH
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----------------E-G----KVF-----VGKRNLLHLNVA  454 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~e----------------e-~----~~~-----~~~~~~~~~nla  454 (553)
                      +...|..++..|+|++|+..|+++++    ..|.+.+                + .    +.+     ......++.++|
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEA----KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG   81 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHH----TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence            44566677777777777777777776    3443310                0 0    000     011234577777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (553)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~  523 (553)
                      .|+..++++++|+.++.++++++|.++.+++.+|.++..+|++++|+..|+++++++|.+ ..+...+.
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~  149 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD-PKVFYELG  149 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC-HHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc-HHHHHHHH
Confidence            778778888888888888888777777777788888888888888888888887777775 33444443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.97  E-value=3.5e-09  Score=86.71  Aligned_cols=67  Identities=16%  Similarity=0.307  Sum_probs=64.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      ..+++++|.+++++++|++|+.+++++++++|+++.+|+.+|.++..+|++++|++.|++++++.|.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            5789999999999999999999999999999999999999999999999999999999999999875

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.96  E-value=1.2e-08  Score=106.35  Aligned_cols=104  Identities=20%  Similarity=0.388  Sum_probs=97.9

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+...|..+++.|+|.+|+..|+++++    ..|.+           ..+++++|.|++.++++++|+..+.++++
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~   88 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDN-----------YIAYYRRATVFLAMGKSKAALPDLTKVIQ   88 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            4577888999999999999999999999998    56665           67899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      .+|++..+++.+|.+|..+|++++|+..|+++++++|++
T Consensus        89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  127 (450)
T 2y4t_A           89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE  127 (450)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH
T ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            999999999999999999999999999999999999985

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.96  E-value=1.2e-08  Score=86.64  Aligned_cols=97  Identities=15%  Similarity=0.105  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      .++++|.++++.|++.+|+..+.++++.+|+++.+|+.+|.++..+|++++|+..|++|++++|++ ..+...+..+...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~la~~~~~   97 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHTN   97 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999999999999999999999997 4566666666555


Q ss_pred             HHHHHHHHHHHHHhhcccc
Q 008788          529 RRKLKVRLENSLKGCLTRS  547 (553)
Q Consensus       529 ~~~~~~~~~~~~~~mf~~~  547 (553)
                      .....+. ...|.+.....
T Consensus        98 ~g~~~~A-~~~~~~al~~~  115 (121)
T 1hxi_A           98 EHNANAA-LASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHH-HHHHHHHHC--
T ss_pred             cCCHHHH-HHHHHHHHHhC
Confidence            5443333 34555554433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.96  E-value=6.6e-09  Score=102.81  Aligned_cols=110  Identities=17%  Similarity=0.193  Sum_probs=87.8

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHH----HHcCCHHHHHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL----LKLGECRKSIEACNKV  473 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~----~kl~~~~~A~~~~~~a  473 (553)
                      ...+...|..+.+.|++++|+..|+++++    ..|.+             ...+++.++    ...+++++|+..++++
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~----~~p~~-------------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~  192 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQD----QDEDA-------------TLTQLATAWVSLAAGGEKLQDAYYIFQEM  192 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-------------HHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCcCc-------------HHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            34455677888888999999999999888    45544             123333332    2348999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       474 l~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      ++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++ .++...+..+
T Consensus       193 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~~~l~~l~~~  243 (291)
T 3mkr_A          193 ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH-PETLINLVVL  243 (291)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence            99999999999999999999999999999999999999997 4455444433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.95  E-value=3e-09  Score=91.27  Aligned_cols=68  Identities=13%  Similarity=0.251  Sum_probs=65.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      +.++.|+|.++++.|+|++|+.++++||+++|+++.+|+.+|.+|..+|+|++|+++|++|++++|++
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            56788999999999999999999999999999999999999999999999999999999999999875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.94  E-value=6.6e-09  Score=102.51  Aligned_cols=117  Identities=15%  Similarity=0.177  Sum_probs=94.0

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH-----------
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS-----------  466 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A-----------  466 (553)
                      ...+...|..+...|++++|+..|++++.    .+|.+           ..+++++|.+++.+|++++|           
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~  181 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQ----LSNQN-----------GEIGLLLAETLIALNRSEDAEAVLXTIPLQD  181 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTTSC-----------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCcc-----------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence            45677899999999999999999999999    77877           44666666666666666655           


Q ss_pred             -----------------------HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHH
Q 008788          467 -----------------------IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAAL  522 (553)
Q Consensus       467 -----------------------~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~-~~~~~~l  522 (553)
                                             +..+.++++.+|+++.+++.+|.++...|++++|++.|+++++++|++. ..++..|
T Consensus       182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l  261 (287)
T 3qou_A          182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF  261 (287)
T ss_dssp             CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred             cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence                                   4555666788999999999999999999999999999999999999862 3456655


Q ss_pred             HHHHHHH
Q 008788          523 SKLKKQR  529 (553)
Q Consensus       523 ~~l~~~~  529 (553)
                      ..+-...
T Consensus       262 ~~~~~~~  268 (287)
T 3qou_A          262 QEILAAL  268 (287)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            5554443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.94  E-value=2e-09  Score=94.01  Aligned_cols=81  Identities=10%  Similarity=0.047  Sum_probs=72.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      ...++++|.++++.++|.+|+..+.+++..+|+++.+|+.+|.++..+|+|++|+..|+++++++|++. .+...+..+.
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~   96 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP-RFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-HHHHHHHHHH
Confidence            567889999999999999999999999999999999999999999999999999999999999999974 4555555444


Q ss_pred             HH
Q 008788          527 KQ  528 (553)
Q Consensus       527 ~~  528 (553)
                      ..
T Consensus        97 ~~   98 (142)
T 2xcb_A           97 LQ   98 (142)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.94  E-value=1e-08  Score=97.92  Aligned_cols=79  Identities=11%  Similarity=0.071  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      ..++.++|.++.+++++++|+..+.++++.+|.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+.
T Consensus       141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~  219 (252)
T 2ho1_A          141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN-ARSLLLGIRLA  219 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Confidence            35667777777777777777777777777777777777777777777777777777777777777765 33444444443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.94  E-value=6.5e-09  Score=90.98  Aligned_cols=102  Identities=14%  Similarity=0.188  Sum_probs=84.8

Q ss_pred             CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-C-CCHHHHHH
Q 008788          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVLDAN-P-AHVKGLYR  486 (553)
Q Consensus       412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~al~~d-p-~n~ka~~r  486 (553)
                      .....+.+.|.+++.    ..+.+           ..+.+|+|.|+.+.+   +..+++..+..+++.+ | ++..++|.
T Consensus        12 ~~l~~~~~~y~~e~~----~~~~~-----------~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~   76 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKA----AGSVS-----------KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFY   76 (152)
T ss_dssp             HHHHHHHHHHHHHHH----TTCCC-----------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc----cCCCc-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHH
Confidence            345667788888876    44444           568899999999988   6779999999999999 7 67999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          487 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       487 ~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      +|.+|+++++|++|+++++++|+++|+| ..+....+.+.+++
T Consensus        77 LAv~~~kl~~Y~~A~~y~~~lL~ieP~n-~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           77 LAVGNYRLKEYEKALKYVRGLLQTEPQN-NQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHH
Confidence            9999999999999999999999999998 44666555555444

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.94  E-value=1.4e-08  Score=80.49  Aligned_cols=78  Identities=23%  Similarity=0.438  Sum_probs=70.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      ..+++++|.++..+++|.+|+.++.++++++|.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999987 4455555444

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.94  E-value=1e-08  Score=104.87  Aligned_cols=78  Identities=15%  Similarity=0.273  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      ..++.++|.++.++|++++|+..++++++++|+++.+++.+|.++...|++++|+..|+++++++|++ ..+...+..+
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~  314 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH-ADSLNNLANI  314 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-HHHHHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777765 3344434333

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.94  E-value=1.3e-08  Score=94.65  Aligned_cols=77  Identities=17%  Similarity=0.175  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008788          448 LLHLNVAACLLKL-GECRKSIEACNKVLD--ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (553)
Q Consensus       448 ~~~~nla~~~~kl-~~~~~A~~~~~~al~--~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~  524 (553)
                      .++.++|.++..+ +++++|+..+.++++  .+|.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~  155 (225)
T 2vq2_A           77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF-PPAFKELAR  155 (225)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-chHHHHHHH
Confidence            4556666666666 666666666666666  445556666666666666666666666666666666664 234444433


Q ss_pred             H
Q 008788          525 L  525 (553)
Q Consensus       525 l  525 (553)
                      +
T Consensus       156 ~  156 (225)
T 2vq2_A          156 T  156 (225)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.94  E-value=8.7e-09  Score=104.14  Aligned_cols=101  Identities=13%  Similarity=0.124  Sum_probs=94.0

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~  479 (553)
                      .+...|..+++.|+|.+|+..|+++++    ..|.+           ..+++++|.|+.+++++++|+..+.++++++|+
T Consensus        66 ~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  130 (368)
T 1fch_A           66 QPFEEGLRRLQEGDLPNAVLLFEAAVQ----QDPKH-----------MEAWQYLGTTQAENEQELLAISALRRCLELKPD  130 (368)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHH----SCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC
Confidence            345788999999999999999999999    67766           568999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      +..+++.+|.++..+|++++|+..|+++++++|++.
T Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  166 (368)
T 1fch_A          131 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA  166 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence            999999999999999999999999999999999864

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.93  E-value=6.2e-09  Score=103.14  Aligned_cols=121  Identities=17%  Similarity=0.216  Sum_probs=98.1

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      ...+...|..++..|++++|+..|+++++..........      ......++.++|.++.++|++++|+.+++++++++
T Consensus       193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  266 (330)
T 3hym_B          193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI  266 (330)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence            344567788888888888888888888885433221110      01125689999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      |++..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+
T Consensus       267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~  313 (330)
T 3hym_B          267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD-TFSVTMLGHC  313 (330)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC-HHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc-hHHHHHHHHH
Confidence            9999999999999999999999999999999999997 4455555544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.93  E-value=1.1e-08  Score=101.21  Aligned_cols=101  Identities=19%  Similarity=0.328  Sum_probs=92.5

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      ...+...|..++..|++++|+..|++++.    ..|.+           ..++.++|.++..++++++|+..+.++++.+
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  236 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVE----LRPDD-----------AQLWNKLGATLANGNRPQEALDAYNRALDIN  236 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            34566788889999999999999999998    56655           5688999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      |++..+++.+|.++..+|++++|+..|+++++++|+
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            999999999999999999999999999999999998

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.93  E-value=9e-09  Score=93.35  Aligned_cols=113  Identities=17%  Similarity=0.214  Sum_probs=80.7

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHH----------------
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR----------------  464 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~----------------  464 (553)
                      +...|..++..|++++|+..|+++++    .+|.+           ..+++++|.+++.+|+++                
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~   73 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSD----ELQSR-----------GDVKLAKADCLLETKQFELAQELLATIPLEYQDN   73 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCH----HHHTS-----------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCCh
Confidence            44667777778888888888888777    44444           233444444444444433                


Q ss_pred             ------------------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHH
Q 008788          465 ------------------KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAALSKL  525 (553)
Q Consensus       465 ------------------~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~-~~~~~~l~~l  525 (553)
                                        +|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++. ..++..+..+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~  153 (176)
T 2r5s_A           74 SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDI  153 (176)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHH
Confidence                              356666677788899999999999999999999999999999999999742 3355555554


Q ss_pred             HHH
Q 008788          526 KKQ  528 (553)
Q Consensus       526 ~~~  528 (553)
                      -..
T Consensus       154 ~~~  156 (176)
T 2r5s_A          154 LSA  156 (176)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.93  E-value=1e-08  Score=87.20  Aligned_cols=82  Identities=15%  Similarity=0.122  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      ...+.++|.++++.++|++|+..++++++++|+++.+|+.+|.++..+|+|++|+.+|+++++++|++ ..+...+..+.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~   82 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999997 44555555554


Q ss_pred             HHH
Q 008788          527 KQR  529 (553)
Q Consensus       527 ~~~  529 (553)
                      ...
T Consensus        83 ~~~   85 (126)
T 3upv_A           83 IAV   85 (126)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.92  E-value=9.5e-09  Score=99.22  Aligned_cols=113  Identities=16%  Similarity=0.207  Sum_probs=95.4

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..++..|++++|+..|+++++    ..|.+           ..++.++|.|+..+++|++|+.+++++++++
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  138 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVD----RDTTR-----------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT  138 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHh----cCccc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence            44467788889999999999999999999    56655           5689999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      |.++.+++.+|......+++++|+..|+++++++|++ ..+...+..+.
T Consensus       139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~  186 (272)
T 3u4t_A          139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-YIGYLWRARAN  186 (272)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-hHHHHHHHHHH
Confidence            9999999999944555569999999999999999997 33444444433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.92  E-value=1.7e-08  Score=93.98  Aligned_cols=80  Identities=19%  Similarity=0.174  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK-SSEPDATAALSKL  525 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P-~~~~~~~~~l~~l  525 (553)
                      ..++.++|.++.+++++++|+..+.++++.+|.+..+++.+|.++..+|++++|+..|+++++++| .+ ..+...+..+
T Consensus       113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~  191 (225)
T 2vq2_A          113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ-ADDLLLGWKI  191 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999999999999999999999999 76 3454444444


Q ss_pred             HH
Q 008788          526 KK  527 (553)
Q Consensus       526 ~~  527 (553)
                      ..
T Consensus       192 ~~  193 (225)
T 2vq2_A          192 AK  193 (225)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.92  E-value=9.4e-10  Score=89.38  Aligned_cols=65  Identities=22%  Similarity=0.464  Sum_probs=47.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          451 LNVAACLLKLGECRKSIEACNKVLDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       451 ~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k-a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      +++|.++++.++|++|+..++++++.+|+++. +++.+|.++..+|++++|+..|+++++++|++.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   69 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP   69 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            45677777777777777777777777777777 777777777777777777777777777777653

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.91  E-value=8.5e-09  Score=98.43  Aligned_cols=123  Identities=14%  Similarity=0.230  Sum_probs=71.8

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChh----------------H-HH------HHhhhhhHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----------------E-GK------VFVGKRNLLHLNVA  454 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~e----------------e-~~------~~~~~~~~~~~nla  454 (553)
                      +..+...|..++..|++++|+..|+++++    ..|.+..                + .+      ........+++++|
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  112 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE----IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYG  112 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHH
Confidence            55566677777777777777777777766    2333210                0 00      00011134566666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          455 ACLLKLGECRKSIEACNKVLD--ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~--~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      .++..++++++|+..+.+++.  .+|.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+
T Consensus       113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~  184 (252)
T 2ho1_A          113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ-PSVALEMADL  184 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc-HHHHHHHHHH
Confidence            666666666666666666666  566666666666666666666666666666666666664 2344334333

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=98.91  E-value=8.6e-10  Score=113.15  Aligned_cols=86  Identities=19%  Similarity=0.122  Sum_probs=74.5

Q ss_pred             CCCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCc
Q 008788          167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE  246 (553)
Q Consensus       167 ~~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~  246 (553)
                      ..++.||.|++||+++ .||+.|+++ .++|+.|.+|.++++|||+++|.||++|+++.|.|+....|+...    .+++
T Consensus       159 ~~~~~gD~V~i~y~g~-~dG~~fd~~-~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~----laGk  232 (392)
T 1t11_A          159 EAAENGKRVSIDFVGS-IDGVEFEGG-KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN----LKGK  232 (392)
T ss_dssp             CCCCTTCEEEEEEEEE-SSSSCCTTC-EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT----TSSC
T ss_pred             CCCCCCCEEEEEEEEE-ECCEEccCC-CccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCC----CCCC
Confidence            4588999999999997 699999877 468999999999999999999999999999999998445566442    2678


Q ss_pred             eEEEEEEEeeee
Q 008788          247 EVHFEVELVHLI  258 (553)
Q Consensus       247 ~l~~~v~l~~~~  258 (553)
                      +++|+|+|+++.
T Consensus       233 ~~~F~V~v~~i~  244 (392)
T 1t11_A          233 AAKFAIKVNKVE  244 (392)
T ss_dssp             EEEECCCEEEEE
T ss_pred             eEEEEEEEEEEE
Confidence            999999999985

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.91  E-value=1.5e-08  Score=103.75  Aligned_cols=110  Identities=18%  Similarity=0.214  Sum_probs=87.0

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~  479 (553)
                      .+...|..+.+.|++.+|+..|++|+.    .+|.+           ..+++++|.++..++++++|+..+.+++.++|+
T Consensus       171 ~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  235 (388)
T 1w3b_A          171 AWSNLGCVFNAQGEIWLAIHHFEKAVT----LDPNF-----------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPN  235 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            345566666677777777777777776    45544           567889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      ++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+
T Consensus       236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~  280 (388)
T 1w3b_A          236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-PDAYCNLANA  280 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Confidence            99999999999999999999999999999999986 3454444443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.90  E-value=1.6e-08  Score=83.29  Aligned_cols=68  Identities=19%  Similarity=0.340  Sum_probs=65.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ...++++|.+++.+++|++|+..++++++++|+++.+++.+|.++..+|+|++|+.+|+++++++|++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            46789999999999999999999999999999999999999999999999999999999999999986

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.90  E-value=1.4e-08  Score=96.14  Aligned_cols=139  Identities=15%  Similarity=0.162  Sum_probs=103.6

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH------------------
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK------------------  459 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k------------------  459 (553)
                      ...+...|..+++.|+|++|+..|+++++    ..|.+..        ...+++++|.|+.+                  
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~----~~P~~~~--------~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~  108 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIR----LNPTHPN--------IDYVMYMRGLTNMALDDSALQGFFGVDRSDRD  108 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCTT--------HHHHHHHHHHHHHHHHC--------------C
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCCc--------HHHHHHHHHHHHHhhhhhhhhhhhccchhhcC
Confidence            34567889999999999999999999999    6776522        12467788888876                  


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHH
Q 008788          460 LGECRKSIEACNKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP--DATA  520 (553)
Q Consensus       460 l~~~~~A~~~~~~al~~dp~n~ka~-----------------~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~--~~~~  520 (553)
                      ++++++|+..++++++.+|++..++                 +.+|.++...|+|++|+..|+++++..|++..  ++..
T Consensus       109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  188 (225)
T 2yhc_A          109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALP  188 (225)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHH
Confidence            5789999999999999999988665                 67899999999999999999999999999742  2333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 008788          521 ALSKLKKQRRKLKVRLENSLKGCLTRSLG  549 (553)
Q Consensus       521 ~l~~l~~~~~~~~~~~~~~~~~mf~~~~~  549 (553)
                      .+..+..++.... .-.+.|+.+....+.
T Consensus       189 ~l~~~~~~~g~~~-~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          189 LMENAYRQMQMNA-QAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHTTCHH-HHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHcCCcH-HHHHHHHHHHhhCCC
Confidence            3333333332222 224455655554443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.89  E-value=8.3e-09  Score=101.93  Aligned_cols=110  Identities=12%  Similarity=0.088  Sum_probs=92.5

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-GECRKSIEACNKVLD  475 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl-~~~~~A~~~~~~al~  475 (553)
                      .+..+.+.|+.+.+.|+|++|+..|++|+.......  +       ......++.|+|.+|..+ +++++|+.++++|++
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~-------~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~  146 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--Q-------FRRGANFKFELGEILENDLHDYAKAIDCYELAGE  146 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            466778889999999999999999999998654321  1       111256899999999995 999999999999999


Q ss_pred             hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          476 ANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       476 ~dp~n------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      +.|.+      ..++.++|.++..+|+|++|+..|++++++.|++.
T Consensus       147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  192 (292)
T 1qqe_A          147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (292)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence            98754      57899999999999999999999999999999763

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.89  E-value=1.7e-08  Score=97.35  Aligned_cols=114  Identities=18%  Similarity=0.156  Sum_probs=94.9

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k  482 (553)
                      ..+..+...++|++|+..|+++++    ..+.++       .....+++++|.++..++++++|+..+.++++++|.++.
T Consensus        10 ~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~   78 (275)
T 1xnf_A           10 VLAVPLQPTLQQEVILARMEQILA----SRALTD-------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE   78 (275)
T ss_dssp             GSCCCCCCCHHHHHHHHHHHHHHT----SSCCCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH
T ss_pred             ceeeccCccchHHHHHHHHHHHHh----cccccC-------chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH
Confidence            345566778999999999999998    333221       122678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       483 a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      +++.+|.++..+|++++|+..|+++++++|.+. .+...+..+...
T Consensus        79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~  123 (275)
T 1xnf_A           79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYY  123 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc-HHHHHHHHHHHH
Confidence            999999999999999999999999999999874 455555544433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.88  E-value=2.6e-08  Score=105.57  Aligned_cols=116  Identities=11%  Similarity=0.060  Sum_probs=96.4

Q ss_pred             hhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc-CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 008788          391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA  469 (553)
Q Consensus       391 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~-~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  469 (553)
                      ..+.++.+....+.+..+..+|+|++|+..|+++|+..... .+.+        ......++|+|.+|..+|+|++|+.+
T Consensus       302 v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~H--------p~~a~~~~nLa~~y~~~g~~~eA~~~  373 (490)
T 3n71_A          302 VKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTN--------LYVLRLLSIASEVLSYLQAYEEASHY  373 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTS--------HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            34555667777788888889999999999999999976553 3333        22367899999999999999999999


Q ss_pred             HHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC
Q 008788          470 CNKVLDAN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSS  514 (553)
Q Consensus       470 ~~~al~~d--------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l-----~P~~  514 (553)
                      +.++|++.        |+-+.+++++|.+|..+|+|++|+..|++|+++     -|++
T Consensus       374 ~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H  431 (490)
T 3n71_A          374 ARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH  431 (490)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999773        444678999999999999999999999999986     5666

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.87  E-value=1.6e-08  Score=80.12  Aligned_cols=84  Identities=26%  Similarity=0.412  Sum_probs=76.2

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..++..++|++|+..|++|++    ..|.+           ..+++++|.|+.+++++++|+.++.+++++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNN-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            456677899999999999999999999999    56655           568899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcC
Q 008788          477 NPAHVKGLYRRGMAYMALG  495 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg  495 (553)
                      +|++..+++.+|.++..+|
T Consensus        73 ~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CTTCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999999998765

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.86  E-value=2.2e-08  Score=99.09  Aligned_cols=114  Identities=13%  Similarity=0.066  Sum_probs=95.9

Q ss_pred             HHHHhhhccccccC-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          399 EKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       399 ~~~k~~G~~~~~~g-~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      ..+...|..++..| ++++|+..|++++.    ..|.+           ..++.++|.++..++++++|+..+.++++++
T Consensus        91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  155 (330)
T 3hym_B           91 VSWFAVGCYYLMVGHKNEHARRYLSKATT----LEKTY-----------GPAWIAYGHSFAVESEHDQAMAAYFTAAQLM  155 (330)
T ss_dssp             HHHHHHHHHHHHSCSCHHHHHHHHHHHHT----TCTTC-----------THHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence            34667788888888 89999999999988    56655           5678899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      |.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+...
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~  205 (330)
T 3hym_B          156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-PFVMHEVGVVAFQ  205 (330)
T ss_dssp             TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987 3455555544433

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.86  E-value=7.2e-09  Score=102.38  Aligned_cols=108  Identities=15%  Similarity=0.100  Sum_probs=88.7

Q ss_pred             HHHHHhhhcccccc-CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          398 AEKIRVTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       398 a~~~k~~G~~~~~~-g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      +..+...|..+... |++++|+..|++|++.......         ......++.|+|.++.++|+|++|+.++++++++
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  187 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            55677889999886 9999999999999995442211         1112468999999999999999999999999999


Q ss_pred             CCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          477 NPAHVK-------GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       477 dp~n~k-------a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      +|++..       +|+++|.++..+|++++|+..|+++++++|++
T Consensus       188 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  232 (292)
T 1qqe_A          188 SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF  232 (292)
T ss_dssp             TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred             HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            987643       68999999999999999999999999999985

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.85  E-value=2.1e-08  Score=89.61  Aligned_cols=82  Identities=24%  Similarity=0.215  Sum_probs=73.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      ...++++|.++++.++|++|+..++++++++|+++.+|+.+|.+|..+|+|++|+.+|+++++++|++ ..+...+..+.
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~   89 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-SKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999997 44655555554


Q ss_pred             HHH
Q 008788          527 KQR  529 (553)
Q Consensus       527 ~~~  529 (553)
                      ...
T Consensus        90 ~~~   92 (164)
T 3sz7_A           90 FDM   92 (164)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.84  E-value=1.6e-08  Score=97.53  Aligned_cols=108  Identities=17%  Similarity=0.178  Sum_probs=93.5

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+...|..++..|+|.+|+..|++|++........+       ......++.++|.++..++++++|+.++.++++
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  113 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE  113 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3566788899999999999999999999999654432211       112367899999999999999999999999999


Q ss_pred             h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          476 A--------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       476 ~--------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      +        +|....+++.+|.++..+|++++|+..|++++++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B          114 IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8        5778899999999999999999999999999998

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.83  E-value=1.5e-08  Score=99.89  Aligned_cols=107  Identities=15%  Similarity=0.128  Sum_probs=91.6

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..++..|+|++|+..|++|++.+..... +       ......+++|+|.+|.++++|++|+.++++++++
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~-------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~  225 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-N-------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-c-------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            4556888999999999999999999999987665422 2       2234678999999999999999999999999988


Q ss_pred             CCCC------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 008788          477 NPAH------VKGLYRRGMAYMALG-EFEEAQRDFEMMMKVD  511 (553)
Q Consensus       477 dp~n------~ka~~r~g~a~~~lg-~~~~A~~~l~~al~l~  511 (553)
                      .+..      +.+|+.+|.++..+| .+++|++.|++|+.+.
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            6544      889999999999999 5799999999999873

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.82  E-value=2.3e-08  Score=108.40  Aligned_cols=102  Identities=10%  Similarity=0.047  Sum_probs=95.4

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..++..|++++|+..|++|++    ..|.+           ..+++++|.||.+++++++|+..++++++++
T Consensus        57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  121 (568)
T 2vsy_A           57 PEAVARLGRVRWTQQRHAEAAVLLQQASD----AAPEH-----------PGIALWLGHALEDAGQAEAAAAAYTRAHQLL  121 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45567889999999999999999999999    67766           5689999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCC
Q 008788          478 PAHVKGLYRRGMAYMAL---GEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~l---g~~~~A~~~l~~al~l~P~~  514 (553)
                      |++..+++.+|.++..+   |++++|++.|+++++++|++
T Consensus       122 p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          122 PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            99999999999999999   99999999999999999985

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.80  E-value=3.2e-08  Score=103.92  Aligned_cols=121  Identities=16%  Similarity=0.065  Sum_probs=93.7

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..++..|+|++|+..|++|++.+....+..      .......+|.|+|.+|..+|+|++|+.++++++++.
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~------~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~  124 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ------AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC  124 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG------CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            44456789999999999999999999999765432211      011225678999999999999999999999999873


Q ss_pred             --------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          478 --------PAHVKGLYRRGMAYMALG--EFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       478 --------p~n~ka~~r~g~a~~~lg--~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                              +..+.++..+|.++..++  +|++|+.+|++|++++|++ .++...+..+
T Consensus       125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~-~~~~~~~~~~  181 (472)
T 4g1t_A          125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN-PEFTSGLAIA  181 (472)
T ss_dssp             HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred             HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence                    456788889998887764  6999999999999999987 4455444433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.80  E-value=3.3e-08  Score=97.70  Aligned_cols=103  Identities=13%  Similarity=0.050  Sum_probs=94.2

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..++..|+|++|+..|+++++    ..|.+           ..++.++|.++..++++++|+..+.++++++
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   85 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQ----AAPER-----------EEAWRSLGLTQAENEKDGLAIIALNHARMLD   85 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            34456788899999999999999999999    56655           5688999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      |.+..+++.+|.++..+|++++|+..|+++++++|.+.
T Consensus        86 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  123 (327)
T 3cv0_A           86 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  123 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH
Confidence            99999999999999999999999999999999999863

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.80  E-value=2.4e-08  Score=88.50  Aligned_cols=72  Identities=17%  Similarity=0.195  Sum_probs=65.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA-------HVK-----GLYRRGMAYMALGEFEEAQRDFEMMMKV----  510 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~-------n~k-----a~~r~g~a~~~lg~~~~A~~~l~~al~l----  510 (553)
                      ...+.|+|.+++++|+|++|+..|++||+++|+       +..     +|+++|.|+..+|+|++|+.+|.+||++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            567899999999999999999999999999999       555     9999999999999999999999999999    


Q ss_pred             ---CCCChHHHH
Q 008788          511 ---DKSSEPDAT  519 (553)
Q Consensus       511 ---~P~~~~~~~  519 (553)
                         +|++ ..++
T Consensus        91 ~e~~pd~-~~A~  101 (159)
T 2hr2_A           91 GELNQDE-GKLW  101 (159)
T ss_dssp             CCTTSTH-HHHH
T ss_pred             ccCCCch-HHHH
Confidence               9985 3344

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.80  E-value=3.8e-08  Score=79.66  Aligned_cols=61  Identities=13%  Similarity=0.087  Sum_probs=55.1

Q ss_pred             hhH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          446 RNL-LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       446 ~~~-~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ... +++++|.|+..++++++|+.++.++++++|++..++++        +.+.+|+..|++++.++|++
T Consensus        33 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           33 GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence            346 89999999999999999999999999999999998865        67888999999999988875

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.79  E-value=3.3e-08  Score=98.33  Aligned_cols=107  Identities=10%  Similarity=0.031  Sum_probs=88.3

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..+.. |+|++|+..|++|++.......         ......++.|+|.+|.++|+|++|+.++++++++
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC---------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45667778888888 9999999999999886543211         1123578999999999999999999999999998


Q ss_pred             CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       477 dp~n------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      .+.+      ..+++.+|.++..+|++++|+..|++++ ++|+.
T Consensus       185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence            7644      3588999999999999999999999999 99975

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.78  E-value=5.4e-08  Score=103.63  Aligned_cols=127  Identities=14%  Similarity=0.096  Sum_probs=91.9

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCC----------------ChhHHH------HHhhhhhHHHHHHH
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQ----------------DDEEGK------VFVGKRNLLHLNVA  454 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~----------------~~ee~~------~~~~~~~~~~~nla  454 (553)
                      .+..+...|..++..|++++|+..|+++++.    .|.                .++..+      ........++.++|
T Consensus       242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  317 (537)
T 3fp2_A          242 AALALCYTGIFHFLKNNLLDAQVLLQESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG  317 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence            4555666666666666666666666666652    222                000000      01112256889999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      .++..+++|++|+..+.++++++|++..+++.+|.++..+|++++|+..|+++++++|++. .+...+..+...
T Consensus       318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~  390 (537)
T 3fp2_A          318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP-EVPTFFAEILTD  390 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-HHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999873 455555554443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.75  E-value=5.1e-08  Score=86.27  Aligned_cols=98  Identities=14%  Similarity=0.096  Sum_probs=85.7

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      ...+...|..++..|+|.+|+..|.++++    ..|.+           ..+++++|.|+..++++++|+.++.++++++
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~  111 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIE----LDKKY-----------IKGYYRRAASNMALGKFRAALRDYETVVKVK  111 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            44566789999999999999999999999    56655           5689999999999999999999999999999


Q ss_pred             CCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 008788          478 PAHVKGLYRR--GMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       478 p~n~ka~~r~--g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      |.+..++..+  +..+..+|++++|+..+.++..+
T Consensus       112 p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          112 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            9999988555  44488889999999999988665

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.75  E-value=8.9e-08  Score=82.09  Aligned_cols=82  Identities=15%  Similarity=0.136  Sum_probs=73.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      ...++++|.++++.++|++|+..+.+++.++|+++.+++.+|.++..+|+|++|+..|+++++++|++ ..+...+..+.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~   87 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQ   87 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-HHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999997 44555555554


Q ss_pred             HHH
Q 008788          527 KQR  529 (553)
Q Consensus       527 ~~~  529 (553)
                      ...
T Consensus        88 ~~~   90 (137)
T 3q49_B           88 LEM   90 (137)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.74  E-value=6.3e-08  Score=84.65  Aligned_cols=109  Identities=18%  Similarity=0.188  Sum_probs=92.8

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (553)
                      ...+..+...|..++..|+|++|+..|.+|+........         ......++.++|.++..++++++|+.++.+++
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   76 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERIAYSNLGNAYIFLGEFETASEYYKKTL   76 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            346778889999999999999999999999996554221         11235689999999999999999999999999


Q ss_pred             hhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788          475 DANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (553)
Q Consensus       475 ~~dp~n------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P  512 (553)
                      ++.+..      ..+++.+|.++..+|++++|+..+++++++.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            886543      67899999999999999999999999998843

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.74  E-value=4.9e-08  Score=94.00  Aligned_cols=108  Identities=15%  Similarity=0.133  Sum_probs=93.6

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+...|..++..|++++|+..|.+|+.........+       ......++.++|.++..++++++|+.++.++++
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  155 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE  155 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4566788899999999999999999999999765432211       012367899999999999999999999999999


Q ss_pred             h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          476 A--------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       476 ~--------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      +        +|....+++.+|.++..+|++++|+..|++++++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9        7788899999999999999999999999999987

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.73  E-value=1.3e-07  Score=98.64  Aligned_cols=121  Identities=10%  Similarity=0.068  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc-CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  471 (553)
Q Consensus       393 e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~-~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  471 (553)
                      +.+..+....+.+......|+|++|+..|++||+..... .+.+.        ..+..++|+|.+|..+|+|++|+.++.
T Consensus       293 ~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp--------~~a~~~~nLa~~y~~~g~~~eA~~~~~  364 (433)
T 3qww_A          293 DMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNV--------YMLHMMYQAMGVCLYMQDWEGALKYGQ  364 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSH--------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhch--------HHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            334445555555666667789999999999999976553 34332        236789999999999999999999999


Q ss_pred             HHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHH
Q 008788          472 KVLDA--------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDATAAL  522 (553)
Q Consensus       472 ~al~~--------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l-----~P~~~~~~~~~l  522 (553)
                      ++|++        .|+-+..|+++|.+|..+|+|++|+..|++|+++     -|++ +.+....
T Consensus       365 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~l~  427 (433)
T 3qww_A          365 KIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH-PYISEIK  427 (433)
T ss_dssp             HHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC-HHHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC-hHHHHHH
Confidence            99977        3445678999999999999999999999999986     5776 3344433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.72  E-value=4.8e-08  Score=79.95  Aligned_cols=101  Identities=19%  Similarity=0.137  Sum_probs=81.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS--SEPDATAALSK  524 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~--~~~~~~~~l~~  524 (553)
                      ..+++++|.+++.++++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|.  + ..+...+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~l~~   84 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN-KDVWAAKAD   84 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch-HHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999999999999999999998  7 346555555


Q ss_pred             HHHHH-HHHHHHHHHHHHhhcccccC
Q 008788          525 LKKQR-RKLKVRLENSLKGCLTRSLG  549 (553)
Q Consensus       525 l~~~~-~~~~~~~~~~~~~mf~~~~~  549 (553)
                      +.... ... .+..+.+.++....++
T Consensus        85 ~~~~~~~~~-~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           85 ALRYIEGKE-VEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHTTCSSCS-HHHHHHHHHHGGGCCC
T ss_pred             HHHHHhCCH-HHHHHHHHHHhhcccC
Confidence            54444 322 3344556666555444

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.71  E-value=7e-08  Score=98.72  Aligned_cols=109  Identities=14%  Similarity=0.063  Sum_probs=95.6

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+...|..++..|+|++|+..|.+|++.......         ......+++|+|.||..++++++|+.++.++++
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45677788999999999999999999999997654321         113367899999999999999999999999999


Q ss_pred             -----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          476 -----ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       476 -----~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                           .+|..+.+++.+|.++..+|++++|+..+++++++.+.
T Consensus       251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence                 78888999999999999999999999999999998553

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.70  E-value=1.7e-07  Score=101.43  Aligned_cols=115  Identities=13%  Similarity=0.103  Sum_probs=89.2

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      +...|..+++.|++++|+..|+++++.........        .....++.+++.++.++|++++|+..++++++++|++
T Consensus       478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  549 (597)
T 2xpi_A          478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE--------KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND  549 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS--------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch--------hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            44555666666666666666666665322111111        0125689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008788          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (553)
Q Consensus       481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~  524 (553)
                      +.+|+.+|.+|...|++++|++.|+++++++|++ ..+...|..
T Consensus       550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~  592 (597)
T 2xpi_A          550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNE-IMASDLLKR  592 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-hHHHHHHHH
Confidence            9999999999999999999999999999999997 446555543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.69  E-value=6.4e-08  Score=102.26  Aligned_cols=114  Identities=13%  Similarity=0.105  Sum_probs=85.8

Q ss_pred             HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCC
Q 008788          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK---LGECRKSIEACNKVLDANP  478 (553)
Q Consensus       402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k---l~~~~~A~~~~~~al~~dp  478 (553)
                      ...|..++..|++++|+..|++++....    .+..     ......+++++|.++..   ++++++|+..+.++++.+|
T Consensus       376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~----~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~  446 (514)
T 2gw1_A          376 NFFAEILTDKNDFDKALKQYDLAIELEN----KLDG-----IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP  446 (514)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHH----TSSS-----CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhhh----ccch-----HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence            3445555555555555555555555211    1100     00013389999999999   9999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       479 ~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      ++..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+
T Consensus       447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~  492 (514)
T 2gw1_A          447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM-EEKLQAITFA  492 (514)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH-HHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence            999999999999999999999999999999999986 4555555443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.69  E-value=3.2e-08  Score=98.43  Aligned_cols=108  Identities=10%  Similarity=0.020  Sum_probs=88.4

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+.+.|+.+.+.|+|++|+..|++|++......  +       ......++.|+|.+|.. ++|++|+.++++|+++
T Consensus        75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~-------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~  144 (307)
T 2ifu_A           75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG--T-------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV  144 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--C-------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence            355667778888888888888888888888644321  1       11235689999999999 9999999999999999


Q ss_pred             CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       477 dp~n------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      .+..      ..+++++|.+|..+|+|++|+..|++++++.|.+
T Consensus       145 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          145 FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            7643      6789999999999999999999999999997654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.69  E-value=5.5e-08  Score=95.89  Aligned_cols=107  Identities=14%  Similarity=0.123  Sum_probs=89.8

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..++..|+|++|+..|++|++.+... +.+.       .....+++|+|.+|.++++|++|+.++++++++
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-~~~~-------~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNE-------EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-Cccc-------cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            46678889999999999999999999999865543 2221       112368999999999999999999999999988


Q ss_pred             CCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 008788          477 NPA------HVKGLYRRGMAYMALGEFEEA-QRDFEMMMKVD  511 (553)
Q Consensus       477 dp~------n~ka~~r~g~a~~~lg~~~~A-~~~l~~al~l~  511 (553)
                      .+.      ...+|+++|.++..+|++++| ...|++|+.+.
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            642      278999999999999999999 78899999774

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.68  E-value=1.1e-07  Score=97.31  Aligned_cols=108  Identities=10%  Similarity=0.103  Sum_probs=94.0

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+...|..+...|+|++|+..|.+|++......  +       ......+++|+|.||..+|++++|+.++.+|++
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--Q-------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--C-------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3466778899999999999999999999999665432  1       122367899999999999999999999999999


Q ss_pred             -----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788          476 -----AN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (553)
Q Consensus       476 -----~d-p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P  512 (553)
                           .+ |..+.+++.+|.++..+|++++|+..|++|+++.+
T Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence                 56 88899999999999999999999999999999843

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.67  E-value=8.5e-08  Score=94.50  Aligned_cols=107  Identities=14%  Similarity=0.140  Sum_probs=86.3

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-  476 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-  476 (553)
                      +..+...|..++..++|++|+..|++|++...    ...+.     .....+++|+|.+|..+++|++|+.++.+|++. 
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~----~~~~~-----~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  185 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQL----TGIDV-----YQNLYIENAIANIYAENGYLKKGIDLFEQILKQL  185 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC----CCSCT-----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc----ccccH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            44555688888889999999999999998322    11110     122568999999999999999999999999953 


Q ss_pred             ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          477 ------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       477 ------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                            .+..+.+++.+|.+|..+|+|++|+..+++|+++.+.
T Consensus       186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~  228 (293)
T 3u3w_A          186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence                  2344678999999999999999999999999998654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.66  E-value=2.1e-07  Score=97.12  Aligned_cols=124  Identities=10%  Similarity=0.100  Sum_probs=95.8

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc-CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~-~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      .+..+...-..+.++|+|++|+..|+++++..... .+.+        .....++.|+|.+|..+|+|++|+.++.++|+
T Consensus       286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h--------~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~  357 (429)
T 3qwp_A          286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDIN--------IYQLKVLDCAMDACINLGLLEEALFYGTRTME  357 (429)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTS--------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccc--------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            34455555666778899999999999999855443 3333        22467899999999999999999999999997


Q ss_pred             hC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHH
Q 008788          476 AN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       476 ~d--------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l-----~P~~~~~~~~~l~~l~~~~  529 (553)
                      +.        |.-+..++++|.+|..+|+|++|+..|++|+++     -|++ +.+...+..+....
T Consensus       358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~~~~~l~~~~  423 (429)
T 3qwp_A          358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH-SLIEDLILLLEECD  423 (429)
T ss_dssp             HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS-HHHHHHHHHHHHHH
T ss_pred             hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHH
Confidence            72        444678999999999999999999999999986     6666 44554444444433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.66  E-value=1.4e-07  Score=82.29  Aligned_cols=108  Identities=21%  Similarity=0.228  Sum_probs=90.6

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..++..|+|++|+..|++|+........         ......++.++|.++..++++++|+.++.+++++
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3456778999999999999999999999997654321         1123568999999999999999999999999987


Q ss_pred             CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          477 NP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       477 dp------~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      .+      ....+++.+|.++..+|++++|+..+++++++...
T Consensus       119 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          119 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            42      23678999999999999999999999999987654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.66  E-value=1.1e-07  Score=97.61  Aligned_cols=106  Identities=16%  Similarity=0.232  Sum_probs=94.2

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (553)
                      ...+..+...|..++..|+|.+|+..|++|++    ..|.+.       .....+++++|.+|..+++|++|+.++.+++
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQ----AGTEDL-------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH----hcccCh-------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45677788999999999999999999999999    566552       1235689999999999999999999999999


Q ss_pred             hh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788          475 DA------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (553)
Q Consensus       475 ~~------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~  511 (553)
                      ++      ++....+++.+|.++..+|++++|+..|++++++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  156 (411)
T 4a1s_A          114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA  156 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            98      67788999999999999999999999999999983

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.66  E-value=1e-07  Score=93.45  Aligned_cols=110  Identities=23%  Similarity=0.295  Sum_probs=92.8

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..++..|++++|+..|++++..+......+       ......++.++|.++..+|++++|+..+.+++++
T Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD-------DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT-------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            455677889999999999999999999999765542222       1123568999999999999999999999999974


Q ss_pred             -------------------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788          477 -------------------------------------------------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMM  507 (553)
Q Consensus       477 -------------------------------------------------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~a  507 (553)
                                                                       +|.++.+++.+|.+|..+|++++|+..|++|
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  304 (311)
T 3nf1_A          225 AHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA  304 (311)
T ss_dssp             HHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                                                             4667889999999999999999999999999


Q ss_pred             HHhCCC
Q 008788          508 MKVDKS  513 (553)
Q Consensus       508 l~l~P~  513 (553)
                      +++.|+
T Consensus       305 l~l~~~  310 (311)
T 3nf1_A          305 MRSRKQ  310 (311)
T ss_dssp             HHHHC-
T ss_pred             HHHhhc
Confidence            999875

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.64  E-value=1.4e-07  Score=84.04  Aligned_cols=80  Identities=15%  Similarity=0.202  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDA------------------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM  508 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~------------------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al  508 (553)
                      +..+.++|.++++.++|.+|+..+.+|+.+                  +|.+..+|+++|.||..+|+|++|+.++++|+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            567899999999999999999999999999                  78888999999999999999999999999999


Q ss_pred             HhCCCChHHHHHHHHHHHH
Q 008788          509 KVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       509 ~l~P~~~~~~~~~l~~l~~  527 (553)
                      +++|++. .+...+..+..
T Consensus        91 ~~~p~~~-~a~~~~g~~~~  108 (162)
T 3rkv_A           91 KREETNE-KALFRRAKARI  108 (162)
T ss_dssp             HHSTTCH-HHHHHHHHHHH
T ss_pred             hcCCcch-HHHHHHHHHHH
Confidence            9999973 34444444433

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.64  E-value=3.4e-07  Score=90.14  Aligned_cols=105  Identities=14%  Similarity=0.122  Sum_probs=83.1

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH---h
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL---D  475 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al---~  475 (553)
                      ......|..+...|+|++|+..|++|+.........         .....+++++|.+|..+++|++|+.++.+|+   +
T Consensus       116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~  186 (293)
T 2qfc_A          116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE  186 (293)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            334456777778888888988888888743221111         1125689999999999999999999999999   4


Q ss_pred             hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788          476 ANPAHV----KGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (553)
Q Consensus       476 ~dp~n~----ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P  512 (553)
                      ..+++.    .+++.+|.+|..+|+|++|+..|++|+++.+
T Consensus       187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            455532    7999999999999999999999999998864

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.63  E-value=2.1e-07  Score=95.17  Aligned_cols=107  Identities=15%  Similarity=0.138  Sum_probs=90.5

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+...|..++..|++.+|+..|.+|++.+..... .       ......+++++|.||..+|+|++|+.++.+|++
T Consensus       141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  212 (383)
T 3ulq_A          141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA-Y-------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYS  212 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST-T-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc-c-------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            45777888999999999999999999999997655321 1       122367899999999999999999999999998


Q ss_pred             hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          476 ANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       476 ~dp~n------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      +.+..      ..+++++|.+|..+|++++|+..|++|+++
T Consensus       213 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  253 (383)
T 3ulq_A          213 MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV  253 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            86543      358999999999999999999999999995

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.63  E-value=2e-08  Score=106.55  Aligned_cols=102  Identities=14%  Similarity=0.121  Sum_probs=89.0

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..+++.|+|++|+..|++|++    ++|.+           ..+++|+|.+|..+++|++|+.++++|++++
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~-----------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~  104 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIE----LDKKY-----------IKGYYRRAASNMALGKFRAALRDYETVVKVK  104 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            55677899999999999999999999999    67766           6789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 008788          478 PAHVKGLYRRGMA--YMALGEFEEAQRDFE-----------MMMKVDKSS  514 (553)
Q Consensus       478 p~n~ka~~r~g~a--~~~lg~~~~A~~~l~-----------~al~l~P~~  514 (553)
                      |++..+++.++.+  +..+++|++|++.++           +++.++|+.
T Consensus       105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999999  888999999999999           888888753

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.63  E-value=3.5e-07  Score=75.36  Aligned_cols=97  Identities=10%  Similarity=0.113  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      ...++++|.+++..++|++|+..+.+++..+|.++.+++.+|.++..+|++++|+..++++++++|++ ..+...+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~   82 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999987 44555555554


Q ss_pred             HHHHHHHHHHHHHHHhhcc
Q 008788          527 KQRRKLKVRLENSLKGCLT  545 (553)
Q Consensus       527 ~~~~~~~~~~~~~~~~mf~  545 (553)
                      ....... +....|.+...
T Consensus        83 ~~~~~~~-~A~~~~~~~~~  100 (118)
T 1elw_A           83 EFLNRFE-EAKRTYEEGLK  100 (118)
T ss_dssp             HHTTCHH-HHHHHHHHHHT
T ss_pred             HHHhhHH-HHHHHHHHHHH
Confidence            4333222 22334444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.62  E-value=1.3e-07  Score=86.66  Aligned_cols=106  Identities=11%  Similarity=0.121  Sum_probs=90.6

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..++..|+|++|+..|.+|+..+.....         ......+++++|.++..+|++++|+.++.+++++
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4667788999999999999999999999997665432         1123678999999999999999999999999998


Q ss_pred             ---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788          477 ---NP----AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (553)
Q Consensus       477 ---dp----~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~  511 (553)
                         .+    ....+++.+|.++..+|++++|+..|++++++.
T Consensus        96 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A           96 LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence               33    346789999999999999999999999999874

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.61  E-value=3.6e-07  Score=77.30  Aligned_cols=79  Identities=23%  Similarity=0.259  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHH
Q 008788          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHV---KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAALS  523 (553)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~---ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~--~~~~~~l~  523 (553)
                      .++++|.+++..++|.+|+..+.++++.+|++.   .+++.+|.++..+|+|++|+..|+++++++|++.  ..+...+.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            467899999999999999999999999999998   8999999999999999999999999999999873  23444444


Q ss_pred             HHHH
Q 008788          524 KLKK  527 (553)
Q Consensus       524 ~l~~  527 (553)
                      .+..
T Consensus        84 ~~~~   87 (129)
T 2xev_A           84 LSQY   87 (129)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.61  E-value=3.5e-07  Score=98.92  Aligned_cols=112  Identities=18%  Similarity=0.111  Sum_probs=89.6

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..+++.|++++|+..|+++++    ..|.+           ..++++++.+|.+.|++++|+..++++++.+
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  437 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSST----MDPQF-----------GPAWIGFAHSFAIEGEHDQAISAYTTAARLF  437 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34455678888888999999999999887    55555           5578888888888889999999888888888


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      |.+..+++.+|.+|...|++++|++.|+++++++|.+ ..+...+..+
T Consensus       438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~  484 (597)
T 2xpi_A          438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD-PLLLNELGVV  484 (597)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHH
Confidence            8888888888888888899999999998888888886 3344444433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.61  E-value=3.3e-07  Score=90.93  Aligned_cols=87  Identities=11%  Similarity=0.025  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHH
Q 008788          414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK-GLYRRGMAYM  492 (553)
Q Consensus       414 ~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k-a~~r~g~a~~  492 (553)
                      +++|+..|++|+..   +.|.+           ..+|.++|.++.+++++++|+..++++++++|.++. +|+.+|.++.
T Consensus        80 ~~~A~~~~~rAl~~---~~p~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  145 (308)
T 2ond_A           80 SDEAANIYERAIST---LLKKN-----------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR  145 (308)
T ss_dssp             HHHHHHHHHHHHTT---TTTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH---hCccc-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHH
Confidence            38999999999983   25555           568888888888899999999999999999888886 8888898888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC
Q 008788          493 ALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       493 ~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      .+|++++|+..|++|++++|.+
T Consensus       146 ~~~~~~~A~~~~~~a~~~~p~~  167 (308)
T 2ond_A          146 RAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HHHCHHHHHHHHHHHHTSTTCC
T ss_pred             HhcCHHHHHHHHHHHHhcCCCC
Confidence            8889999999999998888875

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.60  E-value=2.6e-07  Score=78.14  Aligned_cols=82  Identities=17%  Similarity=0.223  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      ...++++|.+++..++|++|+..++++++.+|.+..+++.+|.++..++++++|+..|+++++++|++ ..+...+..+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~   94 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999986 44555555554


Q ss_pred             HHH
Q 008788          527 KQR  529 (553)
Q Consensus       527 ~~~  529 (553)
                      ...
T Consensus        95 ~~~   97 (133)
T 2lni_A           95 EAM   97 (133)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.59  E-value=1.6e-07  Score=92.02  Aligned_cols=108  Identities=17%  Similarity=0.200  Sum_probs=91.8

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+...|..++..|++++|+..|.+|+.........+       ......++.++|.++..++++++|+.++.++++
T Consensus        67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  139 (311)
T 3nf1_A           67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE  139 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            3456677899999999999999999999999654431111       112367899999999999999999999999998


Q ss_pred             hC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          476 AN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       476 ~d--------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      +.        |....+++.+|.++..+|++++|+..|++++++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          140 IREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            84        667889999999999999999999999999998

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.59  E-value=8.5e-08  Score=94.17  Aligned_cols=130  Identities=12%  Similarity=0.113  Sum_probs=97.7

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..+++.|+|++|+..|++|++    ++|.+           ..+++++|.++..+|+|++|+.++.++++++
T Consensus        38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  102 (281)
T 2c2l_A           38 AVYYTNRALCYLKMQQPEQALADCRRALE----LDGQS-----------VKAHFFLGQCQLEMESYDEAIANLQRAYSLA  102 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTT----SCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45577899999999999999999999999    77776           6789999999999999999999999999999


Q ss_pred             CCCH-------HHHHHHHH----------------------HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          478 PAHV-------KGLYRRGM----------------------AYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       478 p~n~-------ka~~r~g~----------------------a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      |++.       ...++++.                      ..+..|++++|++.|++|++++|++ ..++..+..+...
T Consensus       103 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~  181 (281)
T 2c2l_A          103 KEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDD-GHIRAQQACIEAK  181 (281)
T ss_dssp             HHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCH-HHHTHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccch-hhhhhHHHHHHHH
Confidence            8652       11111111                      1124688999999999999999986 3455555555444


Q ss_pred             HHHHHHHHHHHHHhh
Q 008788          529 RRKLKVRLENSLKGC  543 (553)
Q Consensus       529 ~~~~~~~~~~~~~~m  543 (553)
                      .....++....|.+.
T Consensus       182 ~~~~~~~a~~~f~~a  196 (281)
T 2c2l_A          182 HDKYMADMDELFSQV  196 (281)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhh
Confidence            444444455555544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.58  E-value=2.7e-07  Score=90.85  Aligned_cols=105  Identities=18%  Similarity=0.254  Sum_probs=91.9

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-  476 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-  476 (553)
                      +..+...|..++..|+|++|+..|++|++    ..|.+.       .....++.++|.++..++++++|+.++.+++.+ 
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   73 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDL-------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   73 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHh----hCcccH-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            45677889999999999999999999999    455542       223568999999999999999999999999988 


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          477 -----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       477 -----dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                           .+..+.+++.+|.++..+|++++|+..|++++++.|.
T Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  115 (338)
T 3ro2_A           74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  115 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence                 5566889999999999999999999999999998654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.57  E-value=5.5e-07  Score=97.39  Aligned_cols=114  Identities=17%  Similarity=0.083  Sum_probs=98.8

Q ss_pred             HHHHhhhccccccCC----------HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC--CHHHH
Q 008788          399 EKIRVTGNRLFKEGK----------FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRKS  466 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~----------~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~--~~~~A  466 (553)
                      ..+..++..+.+.++          +++|+..|.+|+.    .+|.+           ..+|++++.++.+++  +|+++
T Consensus        64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~----~~pK~-----------y~aW~hR~w~l~~l~~~~~~~e  128 (567)
T 1dce_A           64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR----VNPKS-----------YGTWHHRCWLLSRLPEPNWARE  128 (567)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTCSSCCHHHH
T ss_pred             HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcccccHHHH
Confidence            345556666666666          9999999999998    78877           679999999999999  77999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          467 IEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       467 ~~~~~~al~~dp~n~ka~~r~g~a~~~lg-~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      +..|++++++||.|..||+.|+.++..++ .+++|++++.++++++|+|. .++.....+...
T Consensus       129 l~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~-saW~~r~~ll~~  190 (567)
T 1dce_A          129 LELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY-SSWHYRSCLLPQ  190 (567)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHh
Confidence            99999999999999999999999999999 99999999999999999985 466666655544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.56  E-value=6.5e-07  Score=72.14  Aligned_cols=67  Identities=13%  Similarity=0.083  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          447 NLLHLNVAACLLKLGE---CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~---~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      ..++..+|.+++..++   ..+|...+.+||++||++++|++.+|.+++..|+|++|+..++++++.+|.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            5678889999876665   799999999999999999999999999999999999999999999999998

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.56  E-value=1.5e-07  Score=86.81  Aligned_cols=97  Identities=14%  Similarity=0.090  Sum_probs=81.1

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..+++.|+|++|+..|++|+.    ..|.+           ..+++++|.|+..+++|++|+.++.++++++
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  152 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLK----IDKNN-----------VKALYKLGVANMYFGFLEEAKENLYKAASLN  152 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence            46778899999999999999999999999    56665           6789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQ-RDFEMMMK  509 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~-~~l~~al~  509 (553)
                      |++..++..++.++..+++++++. ..|.+.+.
T Consensus       153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999998887 44554443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.54  E-value=5.7e-07  Score=89.21  Aligned_cols=108  Identities=7%  Similarity=-0.077  Sum_probs=70.0

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCH
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLDANPAHV  481 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~~dp~n~  481 (553)
                      ..|+.+.+.|++++|+..|++|++    ..|..           ..++...+.+..+ ++++++|+..++++++.+|+++
T Consensus       139 ~~~~~~~~~~~~~~A~~~~~~a~~----~~p~~-----------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~  203 (308)
T 2ond_A          139 QYMKFARRAEGIKSGRMIFKKARE----DARTR-----------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP  203 (308)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHT----STTCC-----------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence            344444444555555555555555    33322           2344444444333 6888888888888888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHH
Q 008788          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKV---DKSSEPDATAALSKL  525 (553)
Q Consensus       482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l---~P~~~~~~~~~l~~l  525 (553)
                      .+|..++..+..+|++++|+..|++|++.   +|++...++..+..+
T Consensus       204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~  250 (308)
T 2ond_A          204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF  250 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence            88888888888888888888888888885   554223454443333

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.54  E-value=3.3e-07  Score=93.64  Aligned_cols=125  Identities=13%  Similarity=0.043  Sum_probs=95.1

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (553)
                      ...+..+...|..++..|++..|+..|.+|++.+......        ......+++++|.||..+++|++|+.++.+|+
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  209 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL  209 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3456677778888888888888888888888865442211        11236789999999999999999999999999


Q ss_pred             hhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHH
Q 008788          475 DANP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMK-----VDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       475 ~~dp------~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~-----l~P~~~~~~~~~l~~l~~~  528 (553)
                      ++.+      ....+++++|.+|..+|++++|+..|++|++     .+|.. ..+...+..+..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~  273 (378)
T 3q15_A          210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCK  273 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHH
Confidence            8742      2356899999999999999999999999999     56654 3444444444433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.53  E-value=3.9e-07  Score=92.85  Aligned_cols=105  Identities=18%  Similarity=0.254  Sum_probs=92.1

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-  476 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-  476 (553)
                      +..+...|..++..|+|.+|+..|+++++    ..|.+.       .....+++++|.++..+++|++|+.++.+++.+ 
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   77 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDL-------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   77 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHh----cCcccH-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            55677899999999999999999999999    456552       223578999999999999999999999999988 


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          477 -----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       477 -----dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                           .|..+.+++.+|.++..+|++++|+..|++++++.|.
T Consensus        78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  119 (406)
T 3sf4_A           78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  119 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence                 4566889999999999999999999999999998764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.53  E-value=5.4e-07  Score=97.48  Aligned_cols=135  Identities=13%  Similarity=0.055  Sum_probs=104.3

Q ss_pred             HHHHhhhccccccCCH-HHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC----------HHHHH
Q 008788          399 EKIRVTGNRLFKEGKF-ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE----------CRKSI  467 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~-~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~----------~~~A~  467 (553)
                      .........+.+.++| ++|+..|.++|.    .+|.+           ..+|++++.++.++++          +++++
T Consensus        29 ~~~~~~~~~~~~~~~~~eeal~~~~~~l~----~nP~~-----------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL   93 (567)
T 1dce_A           29 QSATQAVFQKRQAGELDESVLELTSQILG----ANPDF-----------ATLWNCRREVLQHLETEKSPEESAALVKAEL   93 (567)
T ss_dssp             HHHHHHHHHHHHTTCCSHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHH----HCchh-----------HHHHHHHHHHHHhcccccchhhhhhhHHHHH
Confidence            3333444444455555 578999999999    78887           6799999999999998          99999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008788          468 EACNKVLDANPAHVKGLYRRGMAYMALG--EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLT  545 (553)
Q Consensus       468 ~~~~~al~~dp~n~ka~~r~g~a~~~lg--~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (553)
                      ..++++++.+|.+..||+.|+-++.+++  +|++|++.+.+++++||.|. .++..-.-+-.......+++-..+.++..
T Consensus        94 ~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~-~aW~~R~~~l~~l~~~~~~el~~~~~~I~  172 (567)
T 1dce_A           94 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF-HCWDYRRFVAAQAAVAPAEELAFTDSLIT  172 (567)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc-cHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            9999999999999999999999999999  77999999999999999985 46655554444433122344555555554


Q ss_pred             cccC
Q 008788          546 RSLG  549 (553)
Q Consensus       546 ~~~~  549 (553)
                      ..+.
T Consensus       173 ~~p~  176 (567)
T 1dce_A          173 RNFS  176 (567)
T ss_dssp             TTCC
T ss_pred             HCCC
Confidence            4443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.51  E-value=4.4e-07  Score=88.39  Aligned_cols=109  Identities=12%  Similarity=0.016  Sum_probs=88.4

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN--  477 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d--  477 (553)
                      .....|..+++.++|.+|+..|++++.    . +.+        .+...+++++|.++..+|++.+|+.++.+++...  
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~----~-~d~--------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~  203 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGK----W-PDK--------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG  203 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGG----C-SCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhc----c-CCc--------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence            556777888888888888888876655    1 111        0124589999999999999999999999999654  


Q ss_pred             CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788          478 PA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (553)
Q Consensus       478 p~-n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~  523 (553)
                      |. ...++|++|.|+.++|+.++|+..|++++.++|+  ..+...|.
T Consensus       204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~  248 (282)
T 4f3v_A          204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAALK  248 (282)
T ss_dssp             TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHh
Confidence            55 6679999999999999999999999999999998  45666654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.51  E-value=1.3e-06  Score=73.21  Aligned_cols=81  Identities=19%  Similarity=0.227  Sum_probs=72.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      ...+.++|.+++..++|++|+..+.+++..+|.++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~   90 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-SKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-HHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999987 44555555444


Q ss_pred             HH
Q 008788          527 KQ  528 (553)
Q Consensus       527 ~~  528 (553)
                      ..
T Consensus        91 ~~   92 (131)
T 2vyi_A           91 SS   92 (131)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.50  E-value=9.3e-07  Score=87.71  Aligned_cols=110  Identities=8%  Similarity=-0.086  Sum_probs=83.4

Q ss_pred             HHHHHhhhccccccC--CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHH----HHc---CCHHHHHH
Q 008788          398 AEKIRVTGNRLFKEG--KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL----LKL---GECRKSIE  468 (553)
Q Consensus       398 a~~~k~~G~~~~~~g--~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~----~kl---~~~~~A~~  468 (553)
                      ...+..+|..+...+  ++.+|+..+.++|.    .+|.+           ..++++++.++    .++   +++.+++.
T Consensus        67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~----~nPk~-----------y~aW~~R~~iL~~~~~~l~~~~~~~~EL~  131 (306)
T 3dra_A           67 YTIWIYRFNILKNLPNRNLYDELDWCEEIAL----DNEKN-----------YQIWNYRQLIIGQIMELNNNDFDPYREFD  131 (306)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH----HCTTC-----------CHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHH----HCccc-----------HHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            344566777777777  89999999999988    67766           45777777777    566   67888888


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCChHHHHHHHH
Q 008788          469 ACNKVLDANPAHVKGLYRRGMAYMALGEFE--EAQRDFEMMMKVDKSSEPDATAALS  523 (553)
Q Consensus       469 ~~~~al~~dp~n~ka~~r~g~a~~~lg~~~--~A~~~l~~al~l~P~~~~~~~~~l~  523 (553)
                      .|+++|+.+|.|..||+.|+.++..++.++  ++++.+.++++++|.|.. ++....
T Consensus       132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s-AW~~R~  187 (306)
T 3dra_A          132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS-AWSHRF  187 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH-HHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence            888888888888888888888888888877  888888888888887743 444333

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.50  E-value=1.5e-06  Score=84.14  Aligned_cols=63  Identities=14%  Similarity=0.126  Sum_probs=38.5

Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 008788          447 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVD  511 (553)
Q Consensus       447 ~~~~~nla~~~~k----l~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~----lg~~~~A~~~l~~al~l~  511 (553)
                      ..+++++|.+|..    .+++++|+.++.++++.+  ++.+++.+|.+|..    .+++++|+.+|++|++++
T Consensus        74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~  144 (273)
T 1ouv_A           74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN  144 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence            3455666666666    666666666666666553  56666666666666    666666666666666654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.50  E-value=9.2e-07  Score=76.34  Aligned_cols=82  Identities=13%  Similarity=0.116  Sum_probs=72.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~  523 (553)
                      ...++++|.+++..++|.+|+..++++++++|++   ..+++.+|.++..+++|++|+..|+++++++|++ ..+...+.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a  106 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VKALYRRS  106 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HHHHHHHH
Confidence            5788999999999999999999999999999988   9999999999999999999999999999999987 44555555


Q ss_pred             HHHHHH
Q 008788          524 KLKKQR  529 (553)
Q Consensus       524 ~l~~~~  529 (553)
                      .+....
T Consensus       107 ~~~~~~  112 (148)
T 2dba_A          107 QALEKL  112 (148)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            554443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.49  E-value=4.1e-07  Score=95.37  Aligned_cols=117  Identities=11%  Similarity=0.045  Sum_probs=92.6

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC--CHHHHHHHHHHHHh
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRKSIEACNKVLD  475 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~--~~~~A~~~~~~al~  475 (553)
                      +..+.+.|..++..|+|++|+..|++|++.........       ......++.++|.++++++  +|++|+.++.+|++
T Consensus        94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~  166 (472)
T 4g1t_A           94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY-------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE  166 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS-------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc-------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence            34456788899999999999999999998655432211       0112567888888887765  69999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008788          476 ANPAHVKGLYRRGMAYMA---LGEFEEAQRDFEMMMKVDKSSEPDATAAL  522 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~---lg~~~~A~~~l~~al~l~P~~~~~~~~~l  522 (553)
                      ++|+++.+++.++.++..   .+++++|++.|++|++++|++. .+...+
T Consensus       167 ~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~-~~~~~l  215 (472)
T 4g1t_A          167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ-YLKVLL  215 (472)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH-HHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch-HHHHHH
Confidence            999999999999988655   5778899999999999999973 454444

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.49  E-value=7.7e-07  Score=88.30  Aligned_cols=122  Identities=11%  Similarity=-0.036  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788          414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRKSIEACNKVLDANPAHVKGLYRRGMAY  491 (553)
Q Consensus       414 ~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~--~~~~A~~~~~~al~~dp~n~ka~~r~g~a~  491 (553)
                      .++|+..+.++|.    ++|.+           ..++++++.++..++  .+++++..++.+|..+|.+..+|+.|+.++
T Consensus        49 s~~aL~~t~~~L~----~nP~~-----------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL  113 (306)
T 3dra_A           49 SERALHITELGIN----ELASH-----------YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII  113 (306)
T ss_dssp             SHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH----HCcHH-----------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence            3689999999999    88888           789999999999999  999999999999999999999999999999


Q ss_pred             ----HHc---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcccccCCC
Q 008788          492 ----MAL---GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLK-VRLENSLKGCLTRSLGKF  551 (553)
Q Consensus       492 ----~~l---g~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~mf~~~~~~~  551 (553)
                          ..+   ++++++++.+.++++++|.|. .++..-.-+-.++.... ..+-..+.+++...+.+|
T Consensus       114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny-~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~  180 (306)
T 3dra_A          114 GQIMELNNNDFDPYREFDILEAMLSSDPKNH-HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNN  180 (306)
T ss_dssp             HHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhccccCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCH
Confidence                778   899999999999999999984 46655554444433221 245556666665555443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.48  E-value=5.3e-07  Score=92.29  Aligned_cols=92  Identities=11%  Similarity=0.063  Sum_probs=84.1

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+.+.|..+++.++|++|+..|++|++    ++|.+           ..+++++|.||..+++|++|+.++++|+++
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE----IDPSN-----------TKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHH----hCchh-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            355677899999999999999999999999    67766           678999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRD  503 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~  503 (553)
                      +|++..++..++.++..++++++|.+.
T Consensus       337 ~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          337 APEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888754

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.48  E-value=1.6e-06  Score=71.88  Aligned_cols=80  Identities=23%  Similarity=0.387  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      ..+++++|.++...+++++|+..+.+++..+|.+..+++.+|.++...|++++|+..|+++++++|.+ ..+...+..+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~   87 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999986 34544444443


Q ss_pred             H
Q 008788          527 K  527 (553)
Q Consensus       527 ~  527 (553)
                      .
T Consensus        88 ~   88 (125)
T 1na0_A           88 Y   88 (125)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.47  E-value=5.7e-07  Score=91.61  Aligned_cols=108  Identities=19%  Similarity=0.178  Sum_probs=90.3

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..++..|+|++|+..|++|+........         ......++.++|.++..++++++|+.++.+++.+
T Consensus       186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  256 (406)
T 3sf4_A          186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL  256 (406)
T ss_dssp             HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            3456778899999999999999999999996554221         1123568899999999999999999999999988


Q ss_pred             CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       477 dp~n------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      .+..      ..+++.+|.++..+|++++|+..|++++++.+.
T Consensus       257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  299 (406)
T 3sf4_A          257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  299 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence            7765      788999999999999999999999999988554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.47  E-value=1.9e-06  Score=72.61  Aligned_cols=100  Identities=12%  Similarity=0.149  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-C-CCHHHHHHHH
Q 008788          414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK---SIEACNKVLDAN-P-AHVKGLYRRG  488 (553)
Q Consensus       414 ~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~---A~~~~~~al~~d-p-~n~ka~~r~g  488 (553)
                      ...+...|.+++.    ..+..           ..+.+|+|.|+.+.....+   ++..+...++.+ | .+-.++|.+|
T Consensus        17 l~~~~~~y~~e~~----~~~~s-----------~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LA   81 (126)
T 1nzn_A           17 LLKFEKKFQSEKA----AGSVS-----------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA   81 (126)
T ss_dssp             HHHHHHHHHHHHH----HSCCC-----------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc----cCCCc-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            4556677777765    23322           5688999999999887766   999999999887 5 6788999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          489 MAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       489 ~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      .+++++|+|+.|++.++.+|+.+|+| ..+..+...++.++
T Consensus        82 vg~yklg~Y~~A~~~~~~lL~~eP~n-~QA~~Lk~~i~~~i  121 (126)
T 1nzn_A           82 VGNYRLKEYEKALKYVRGLLQTEPQN-NQAKELERLIDKAM  121 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH
Confidence            99999999999999999999999998 44666555555544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.46  E-value=1.9e-06  Score=86.66  Aligned_cols=125  Identities=15%  Similarity=-0.015  Sum_probs=102.2

Q ss_pred             cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008788          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDANPAHVKGLYRRGM  489 (553)
Q Consensus       411 ~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~dp~n~ka~~r~g~  489 (553)
                      .....+|+..+.++|.    .+|.+           ..++++++.++..++ .+++++..++++|..+|.|..+|+.|+.
T Consensus        67 ~e~se~AL~lt~~~L~----~nP~~-----------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w  131 (349)
T 3q7a_A           67 EEKSERALELTEIIVR----MNPAH-----------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL  131 (349)
T ss_dssp             TCCSHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH----hCchh-----------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            3455789999999999    78887           679999999999999 5999999999999999999999999999


Q ss_pred             HHHHc-C-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhcccccCCC
Q 008788          490 AYMAL-G-EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLK-------VRLENSLKGCLTRSLGKF  551 (553)
Q Consensus       490 a~~~l-g-~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~-------~~~~~~~~~mf~~~~~~~  551 (553)
                      ++..+ + +++++++.+.++++++|.|. .++....-+-.+.....       .++-..+.++....+.+|
T Consensus       132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy-~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~  201 (349)
T 3q7a_A          132 LLDRISPQDPVSEIEYIHGSLLPDPKNY-HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN  201 (349)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHTSSCTTCH-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH
Confidence            99998 8 99999999999999999985 46655555544444333       356666666666555544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.45  E-value=1.5e-06  Score=71.56  Aligned_cols=82  Identities=11%  Similarity=0.032  Sum_probs=68.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDAN-------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT  519 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~d-------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~  519 (553)
                      ..-++.+|..+++.++|..|+..+..|++..       +..+..++.+|.|+.++|+++.|+..+++|++++|++. .+.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~-~~~   83 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ-RAN   83 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-HHH
Confidence            4457899999999999999999999999863       35678899999999999999999999999999999984 454


Q ss_pred             HHHHHHHHHH
Q 008788          520 AALSKLKKQR  529 (553)
Q Consensus       520 ~~l~~l~~~~  529 (553)
                      ..+..++..+
T Consensus        84 ~n~~~~~~~~   93 (104)
T 2v5f_A           84 GNLKYFEYIM   93 (104)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhHHHHHHHH
Confidence            4454444433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.45  E-value=5.5e-07  Score=75.43  Aligned_cols=75  Identities=20%  Similarity=0.200  Sum_probs=68.0

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+...|..++..|+|++|+..|++|++    ..|.+           ..+++++|.|+.++|++++|+..+.++++
T Consensus        25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~   89 (117)
T 3k9i_A           25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVK----QFPNH-----------QALRVFYAMVLYNLGRYEQGVELLLKIIA   89 (117)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4567788999999999999999999999999    67776           67899999999999999999999999999


Q ss_pred             hCCCCHHHHH
Q 008788          476 ANPAHVKGLY  485 (553)
Q Consensus       476 ~dp~n~ka~~  485 (553)
                      .+|+++....
T Consensus        90 ~~p~~~~~~~   99 (117)
T 3k9i_A           90 ETSDDETIQS   99 (117)
T ss_dssp             HHCCCHHHHH
T ss_pred             hCCCcHHHHH
Confidence            9999987654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.42  E-value=1.4e-06  Score=71.75  Aligned_cols=83  Identities=16%  Similarity=0.185  Sum_probs=69.4

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..+|+.++|..|+..|++|++....-...        ......++.++|.|+.++|+++.|+.+++++++++
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~--------~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIS--------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC--------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC--------cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            4566789999999999999999999999965422110        11235789999999999999999999999999999


Q ss_pred             CCCHHHHHHHH
Q 008788          478 PAHVKGLYRRG  488 (553)
Q Consensus       478 p~n~ka~~r~g  488 (553)
                      |++..++.+++
T Consensus        77 P~~~~~~~n~~   87 (104)
T 2v5f_A           77 PEHQRANGNLK   87 (104)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCHHHHhhHH
Confidence            99999988776

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.41  E-value=1.8e-06  Score=86.39  Aligned_cols=92  Identities=14%  Similarity=0.139  Sum_probs=55.1

Q ss_pred             ccccCCHH-HHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhh
Q 008788          408 LFKEGKFE-LAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE----------CRKSIEACNKVLDA  476 (553)
Q Consensus       408 ~~~~g~~~-~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~----------~~~A~~~~~~al~~  476 (553)
                      ..+.|+|. +|+..+.++|.    .+|.+           ..+++.++.+...++.          +.+++..++.+|..
T Consensus        39 ~~~~~e~s~eaL~~t~~~L~----~nP~~-----------ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~  103 (331)
T 3dss_A           39 KRQAGELDESVLELTSQILG----ANPDF-----------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV  103 (331)
T ss_dssp             HHHTTCCSHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHH----HCchh-----------HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence            34567776 79999999998    77776           3445555555444443          45555555555555


Q ss_pred             CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCC
Q 008788          477 NPAHVKGLYRRGMAYMALG--EFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg--~~~~A~~~l~~al~l~P~~  514 (553)
                      +|.|..+|+.|+.++..++  .++++++.+.++++++|.|
T Consensus       104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN  143 (331)
T 3dss_A          104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN  143 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC
Confidence            5555555555555555555  2555555555555555554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.40  E-value=5.7e-06  Score=82.69  Aligned_cols=100  Identities=19%  Similarity=0.114  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788          414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE--CRKSIEACNKVLDANPAHVKGLYRRGMAY  491 (553)
Q Consensus       414 ~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~--~~~A~~~~~~al~~dp~n~ka~~r~g~a~  491 (553)
                      +.+++..+.+++.    .+|.+           ..++++++.++.+++.  |.+++..|+++|+.||.|..||+.|+.++
T Consensus        90 l~~EL~~~~~~L~----~~PKn-----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl  154 (331)
T 3dss_A           90 VKAELGFLESCLR----VNPKS-----------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA  154 (331)
T ss_dssp             HHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            6788888888887    78877           6799999999999994  99999999999999999999999999999


Q ss_pred             HHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          492 MALGE-FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       492 ~~lg~-~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      ..++. ++++++++.++++++|+|.. ++.....+-..+
T Consensus       155 ~~l~~~~~eel~~~~~~I~~~p~N~S-AW~~R~~ll~~l  192 (331)
T 3dss_A          155 AQAAVAPAEELAFTDSLITRNFSNYS-SWHYRSCLLPQL  192 (331)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHCSCCHH-HHHHHHHHHHHH
T ss_pred             HHhCcCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHh
Confidence            99998 69999999999999999864 666555554444

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.40  E-value=1.1e-06  Score=79.47  Aligned_cols=107  Identities=15%  Similarity=0.070  Sum_probs=83.4

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhH------------------HH------HHhhhhhHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE------------------GK------VFVGKRNLLHLNV  453 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee------------------~~------~~~~~~~~~~~nl  453 (553)
                      +..+...|..++..|++++|+..|++++.    ..| +..-                  ..      ........+++++
T Consensus        40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~----~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~l  114 (176)
T 2r5s_A           40 GDVKLAKADCLLETKQFELAQELLATIPL----EYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACEL  114 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTCCG----GGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhh----ccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHH
Confidence            45566777788888888888888877655    222 1100                  00      0111125689999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788          454 AACLLKLGECRKSIEACNKVLDANPAH--VKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (553)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~al~~dp~n--~ka~~r~g~a~~~lg~~~~A~~~l~~al~  509 (553)
                      |.++..+|++++|+..+.++++.+|++  ..+++.+|.++..+|++++|+..|++++.
T Consensus       115 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          115 AVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            999999999999999999999999976  66999999999999999999999999875

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.39  E-value=1.3e-06  Score=85.78  Aligned_cols=108  Identities=19%  Similarity=0.178  Sum_probs=91.8

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..++..|++++|+..|+++++.......         ......++.++|.++..++++++|+..+.+++.+
T Consensus       182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  252 (338)
T 3ro2_A          182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL  252 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3456778899999999999999999999986544221         1123568999999999999999999999999998


Q ss_pred             CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       477 dp~n------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      .+..      ..+++.+|.++..+|++++|+..|++++++.+.
T Consensus       253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  295 (338)
T 3ro2_A          253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  295 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            7665      789999999999999999999999999998654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.38  E-value=2.6e-06  Score=87.35  Aligned_cols=107  Identities=18%  Similarity=0.224  Sum_probs=86.5

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..++..|+|++|+..|++|++.......         ......++.++|.+|+.++++++|+.++.+++.+.
T Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  293 (411)
T 4a1s_A          223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD---------RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA  293 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            346677899999999999999999999996544211         11224578899999999999999999999999887


Q ss_pred             CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          478 PAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       478 p~n------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      +..      ..+++.+|.++..+|++++|+..|++++++.+.
T Consensus       294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  335 (411)
T 4a1s_A          294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE  335 (411)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            644      678889999999999999999999999887543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.37  E-value=1.7e-06  Score=72.53  Aligned_cols=68  Identities=12%  Similarity=0.269  Sum_probs=64.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ...++++|.++...++|.+|+..+.+++..+|.++.+++.+|.++..+|+|++|+..|+++++++|++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence            46789999999999999999999999999999999999999999999999999999999999998754

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.37  E-value=1.9e-06  Score=78.78  Aligned_cols=109  Identities=14%  Similarity=0.073  Sum_probs=89.6

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+...|..++..|++++|+..|.+|+..+.... .+       ......+++++|.++..+|++++|+.++.++++
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP-ED-------PLAASANAYEVATVALHFGDLAGARQEYEKSLV  135 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-cc-------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3466778899999999999999999999999766432 12       112357899999999999999999999999997


Q ss_pred             hCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788          476 ANP--AH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (553)
Q Consensus       476 ~dp--~n----~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P  512 (553)
                      +.+  .+    ..++..+|.++..+|++++|+..|++++++..
T Consensus       136 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          136 YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            632  22    34578999999999999999999999998743

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.37  E-value=8.2e-07  Score=87.33  Aligned_cols=108  Identities=14%  Similarity=0.039  Sum_probs=85.0

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCCh-----------------hHHH------HHhhhhhHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD-----------------EEGK------VFVGKRNLLHLNVA  454 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~-----------------ee~~------~~~~~~~~~~~nla  454 (553)
                      +..+...|..+...|++++|+..|++++.    ..|...                 +...      ........+++++|
T Consensus       151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~----~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la  226 (287)
T 3qou_A          151 GEIGLLLAETLIALNRSEDAEAVLXTIPL----QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLA  226 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTSCG----GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHhCch----hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHH
Confidence            55667778888888888888888877655    222110                 0000      01112256899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788          455 ACLLKLGECRKSIEACNKVLDANPAH--VKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (553)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~dp~n--~ka~~r~g~a~~~lg~~~~A~~~l~~al~  509 (553)
                      .+++.+|++++|+..+.++++.+|++  ..++.+++.++..+|+.++|...|++++.
T Consensus       227 ~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          227 LQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            99999999999999999999999998  99999999999999999999999999875

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.36  E-value=6.2e-06  Score=79.68  Aligned_cols=63  Identities=14%  Similarity=0.193  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 008788          448 LLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDK  512 (553)
Q Consensus       448 ~~~~nla~~~~k----l~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~----lg~~~~A~~~l~~al~l~P  512 (553)
                      .+++++|.+|..    .+++++|+.++.++++.  .++.+++.+|.+|..    .+++++|+.+|+++++++|
T Consensus       147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~  217 (273)
T 1ouv_A          147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN  217 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence            456666666666    66677777777776665  356666777777776    6777777777777766654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.35  E-value=3.2e-06  Score=78.98  Aligned_cols=126  Identities=12%  Similarity=0.079  Sum_probs=82.5

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhh--------c--cCC---CChhHH-----HHHhhhhhHHHHHHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN--------H--VNP---QDDEEG-----KVFVGKRNLLHLNVAACLLK  459 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~--------~--~~~---~~~ee~-----~~~~~~~~~~~~nla~~~~k  459 (553)
                      +..+...|..++..+++++|+..|++|++.-.        .  ...   .+.++.     +....-...+++|+|.+|..
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~   97 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVN   97 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence            44555666666667777777777777655200        0  010   011110     11222235678889999887


Q ss_pred             ----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          460 ----LGECRKSIEACNKVLDANP--AHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       460 ----l~~~~~A~~~~~~al~~dp--~n~ka~~r~g~a~~~----lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                          .+++.+|+.++.++++..+  .++.+++.+|.+|..    .+++++|+.+|++|+++ |.+ ..+...|..+
T Consensus        98 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~-~~a~~~Lg~~  171 (212)
T 3rjv_A           98 RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT-GYAEYWAGMM  171 (212)
T ss_dssp             GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT-THHHHHHHHH
T ss_pred             CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC-HHHHHHHHHH
Confidence                7889999999999998887  358899999999998    88899999999999888 333 2344444433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.32  E-value=3.4e-06  Score=78.81  Aligned_cols=110  Identities=10%  Similarity=-0.011  Sum_probs=84.7

Q ss_pred             HHHhhhccccc----cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHHHH
Q 008788          400 KIRVTGNRLFK----EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACN  471 (553)
Q Consensus       400 ~~k~~G~~~~~----~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~  471 (553)
                      .+...|..++.    .+++.+|+..|++|++    ..+.+         ....+++|+|.+|..    .+++.+|+.++.
T Consensus        87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~----~~~~~---------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A           87 GEIVLARVLVNRQAGATDVAHAITLLQDAAR----DSESD---------AAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS----STTSH---------HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCccCHHHHHHHHHHHHH----cCCCc---------chHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            44556666665    6677777777777766    32210         115789999999999    889999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          472 KVLDANPAHVKGLYRRGMAYMAL-G-----EFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       472 ~al~~dp~n~ka~~r~g~a~~~l-g-----~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      ++++. +.++.+++.+|.+|... +     ++++|+.+|++|++....   .+...|..++
T Consensus       154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~---~A~~~l~~l~  210 (212)
T 3rjv_A          154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD---TGCEEFDRIS  210 (212)
T ss_dssp             HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH---HHHHHHHHHH
T ss_pred             HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHhh
Confidence            99999 77888999999999875 3     899999999999998643   4566665554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.30  E-value=1.7e-06  Score=70.43  Aligned_cols=80  Identities=13%  Similarity=0.094  Sum_probs=65.5

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..+++.|+|++|+..|++|++    .+|.+           ..+|+++|.||.+++++++|+..+.+++++.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVE----TDPDY-----------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            45677899999999999999999999999    67766           5689999999999999999999999999987


Q ss_pred             CC--CHHHHHHHHHHHH
Q 008788          478 PA--HVKGLYRRGMAYM  492 (553)
Q Consensus       478 p~--n~ka~~r~g~a~~  492 (553)
                      |.  +..+...+..++.
T Consensus        72 ~~~~~~~~~~~l~~~l~   88 (100)
T 3ma5_A           72 REEGTQKDLSELQDAKL   88 (100)
T ss_dssp             HHHSCHHHHHHHHHHHH
T ss_pred             hcCCchhHHHHHHHHHH
Confidence            63  3333333333333

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.28  E-value=2.5e-06  Score=85.67  Aligned_cols=110  Identities=13%  Similarity=-0.015  Sum_probs=95.1

Q ss_pred             HHHhhhccccccC-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc-C-CHHHHHHHHHHHHhh
Q 008788          400 KIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-G-ECRKSIEACNKVLDA  476 (553)
Q Consensus       400 ~~k~~G~~~~~~g-~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl-~-~~~~A~~~~~~al~~  476 (553)
                      .+..++..+...+ .+++|+..+.++|.    .+|.+           ..+++.++.|+.++ + ++.+++..|+++|+.
T Consensus        90 aWn~R~~iL~~l~~~l~eEL~~~~~~L~----~nPKn-----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~  154 (349)
T 3q7a_A           90 VWQYRFSLLTSLNKSLEDELRLMNEFAV----QNLKS-----------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP  154 (349)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHH----TTCCC-----------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Confidence            4556666666667 59999999999998    78887           67999999999998 7 899999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFE--------EAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~--------~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      +|.|..||+.|+.++..++.++        ++++.+.++++++|.|.. ++.....+
T Consensus       155 dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S-AW~~R~~l  210 (349)
T 3q7a_A          155 DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS-AWGWRWYL  210 (349)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Confidence            9999999999999999999888        999999999999999854 55544444

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.25  E-value=3e-06  Score=74.87  Aligned_cols=69  Identities=19%  Similarity=0.295  Sum_probs=59.3

Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF----------EEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       459 kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~----------~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      ++++|++|+..+.++++++|+++.+|+++|.++..++++          ++|+..|++|++++|++ .++...+-.+-..
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-~~A~~~LG~ay~~   92 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999875          59999999999999997 4555555554443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.18  E-value=2.2e-05  Score=67.98  Aligned_cols=90  Identities=11%  Similarity=-0.009  Sum_probs=80.0

Q ss_pred             hhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Q 008788          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~~al~~dp~  479 (553)
                      .|..++..+.+.+|+..|++|++    .  .+           ..+++|+|.+|..    .+++.+|+.++.+|.+.  .
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~----~--g~-----------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g   91 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACE----L--NS-----------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N   91 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHH----T--TC-----------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHc----C--CC-----------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence            66777777888999999999988    2  22           5789999999999    89999999999999987  6


Q ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 008788          480 HVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDK  512 (553)
Q Consensus       480 n~ka~~r~g~a~~~----lg~~~~A~~~l~~al~l~P  512 (553)
                      ++.|++++|.+|..    .+++++|+.+|++|.++..
T Consensus        92 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            89999999999999    9999999999999999853

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.16  E-value=5.3e-06  Score=68.85  Aligned_cols=81  Identities=12%  Similarity=0.060  Sum_probs=65.9

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+...|..++..|+|++|+..|++|+.    ..|.+           ..+++++|.|+..+|++++|+..+.++++++
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   83 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALD----FDPTY-----------SVAWKWLGKTLQGQGDRAGARQAWESGLAAA   83 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            45677889999999999999999999999    66765           5689999999999999999999999999998


Q ss_pred             CC--CHHHHHHHHHHHHH
Q 008788          478 PA--HVKGLYRRGMAYMA  493 (553)
Q Consensus       478 p~--n~ka~~r~g~a~~~  493 (553)
                      |.  +..++..+..++..
T Consensus        84 ~~~~~~~~~~~l~~~l~~  101 (115)
T 2kat_A           84 QSRGDQQVVKELQVFLRR  101 (115)
T ss_dssp             HHHTCHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHH
Confidence            74  34444444443333

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.13  E-value=4.5e-06  Score=81.22  Aligned_cols=95  Identities=13%  Similarity=-0.016  Sum_probs=77.4

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-PA  479 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d-p~  479 (553)
                      ....+..+...|+|++|...|..++.    ..|.+           . .++++|.++++.++|.+|+.++..++... |.
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~----~~p~~-----------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~  168 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPV----AGSEH-----------L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF  168 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCC----TTCHH-----------H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHh----cCCch-----------H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence            34567777888899999998887655    34422           4 78999999999999999999999887763 22


Q ss_pred             C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788          480 H-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (553)
Q Consensus       480 n-~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~  511 (553)
                      + ..++|.+|.++..+|++++|+.+|++++.-.
T Consensus       169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence            1 4589999999999999999999999998654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.12  E-value=2e-05  Score=79.78  Aligned_cols=108  Identities=16%  Similarity=0.078  Sum_probs=74.9

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+...|..++..|+|++|+..|.+|+........         ......+++++|.++..+|+|.+|+.++.+++++
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV---------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3445667777788888888888888888875443211         0112445677778888888888888888877766


Q ss_pred             C--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          477 N--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       477 d--------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      .        |....+++.+|.++..+|++++|+..+++++.+.|.
T Consensus       123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            4        234556677777888888888888888888777664

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.10  E-value=7.3e-06  Score=86.72  Aligned_cols=108  Identities=11%  Similarity=0.075  Sum_probs=90.0

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccC-CCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~-~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (553)
                      ...+..+.+.|..+..+|+|++|+..|++||......- +.+.        .....++|+|..|..+|+|++|+.++.+|
T Consensus       348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp--------~~a~~l~nLa~~~~~~G~~~eA~~~~~~A  419 (490)
T 3n71_A          348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA--------QLGMAVMRAGLTNWHAGHIEVGHGMICKA  419 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34577788899999999999999999999999776543 3332        23678999999999999999999999999


Q ss_pred             HhhC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          474 LDAN-----PAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       474 l~~d-----p~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      |++-     |++   .+.+-.++.++..++.|++|...|+++.+.
T Consensus       420 l~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          420 YAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9773     444   556778899999999999999999998654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.08  E-value=5.2e-05  Score=80.97  Aligned_cols=114  Identities=9%  Similarity=0.059  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-hCCC
Q 008788          415 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-------LGECR-------KSIEACNKVLD-ANPA  479 (553)
Q Consensus       415 ~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k-------l~~~~-------~A~~~~~~al~-~dp~  479 (553)
                      .+|+..|++|+.    ..|.+           ..+|+++|..+.+       +|++.       +|+..+.+|++ ++|+
T Consensus       255 ~~a~~~y~~al~----~~p~~-----------~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~  319 (530)
T 2ooe_A          255 KRVMFAYEQCLL----VLGHH-----------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK  319 (530)
T ss_dssp             HHHHHHHHHHHH----HHTTC-----------HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred             HHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence            478889999998    45655           5688999988886       78877       89999999997 8999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008788          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCL  544 (553)
Q Consensus       480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf  544 (553)
                      +..+|+.+|.++..+|++++|+..|+++++++|.+...++..+..+..+... ..+.++.|.+..
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~Al  383 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAR  383 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC-HHHHHHHHHHHH
Confidence            9999999999999999999999999999999998632344444443332222 223344554443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.05  E-value=4e-05  Score=64.65  Aligned_cols=83  Identities=17%  Similarity=0.235  Sum_probs=69.1

Q ss_pred             hHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGE---CRKSIEACNKVLDANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  522 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~---~~~A~~~~~~al~~dp-~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l  522 (553)
                      ..+.+|+|.|+.+...   ..+++..+...++.+| ..-..+|.+|.++.++|+|+.|+++...+|+.+|+|. .+..+.
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~-QA~~Lk  118 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK-QVGALK  118 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH-HHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH-HHHHHH
Confidence            5678999999999875   4579999999999888 4578999999999999999999999999999999984 465555


Q ss_pred             HHHHHHHH
Q 008788          523 SKLKKQRR  530 (553)
Q Consensus       523 ~~l~~~~~  530 (553)
                      ..++.+++
T Consensus       119 ~~Ie~ki~  126 (134)
T 3o48_A          119 SMVEDKIQ  126 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555444

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.05  E-value=3.1e-05  Score=78.28  Aligned_cols=107  Identities=13%  Similarity=0.120  Sum_probs=88.3

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp  478 (553)
                      ..+...|..++..|+|.+|+..|++++..........       ......++.++|.++..+|++++|+.++.+++.+.+
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ-------LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT-------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc-------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            3356788889999999999999999999655432210       011256788999999999999999999999999876


Q ss_pred             C-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788          479 A-----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (553)
Q Consensus       479 ~-----n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P  512 (553)
                      .     ...+++.+|.++...|++++|+..+++++.+.+
T Consensus       167 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          167 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             TSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             ccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            4     356899999999999999999999999998843

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.03  E-value=2.6e-05  Score=82.54  Aligned_cols=76  Identities=14%  Similarity=0.145  Sum_probs=65.0

Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---Ch
Q 008788          447 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKS---SE  515 (553)
Q Consensus       447 ~~~~~nla~~~~k----l~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~----lg~~~~A~~~l~~al~l~P~---~~  515 (553)
                      ..+++++|.+|..    .+++++|+.++++|++.  .++.+++++|.+|..    .+++++|+.+|++|++++|+   + 
T Consensus       363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~-  439 (490)
T 2xm6_A          363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT-  439 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH-
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC-
Confidence            5689999999999    89999999999999986  479999999999999    89999999999999999954   3 


Q ss_pred             HHHHHHHHHH
Q 008788          516 PDATAALSKL  525 (553)
Q Consensus       516 ~~~~~~l~~l  525 (553)
                      ..+...|..+
T Consensus       440 ~~a~~~l~~~  449 (490)
T 2xm6_A          440 ENRNITEKKL  449 (490)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHHhc
Confidence            3444444443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.01  E-value=2.6e-05  Score=83.31  Aligned_cols=102  Identities=12%  Similarity=0.039  Sum_probs=78.7

Q ss_pred             HHHHhhhccccc-------cCCHH-------HHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHH
Q 008788          399 EKIRVTGNRLFK-------EGKFE-------LAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR  464 (553)
Q Consensus       399 ~~~k~~G~~~~~-------~g~~~-------~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~  464 (553)
                      ..+...|..+.+       .|+++       +|+..|++|++.   ..|.+           ..++++++..+.++|+++
T Consensus       273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~---~~p~~-----------~~l~~~~~~~~~~~g~~~  338 (530)
T 2ooe_A          273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST---LLKKN-----------MLLYFAYADYEESRMKYE  338 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT---TCSSC-----------HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH---hCccc-----------HHHHHHHHHHHHhcCCHH
Confidence            345566666664       68887       899999999862   24554           567888888888888888


Q ss_pred             HHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          465 KSIEACNKVLDANPAHV-KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       465 ~A~~~~~~al~~dp~n~-ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      +|+..++++++++|.++ .+|...+.++.++|++++|++.|++|++..|.+
T Consensus       339 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~  389 (530)
T 2ooe_A          339 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  389 (530)
T ss_dssp             HHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred             HHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc
Confidence            88888888888888875 588888888888888888888888888877654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.98  E-value=6.8e-05  Score=64.10  Aligned_cols=82  Identities=17%  Similarity=0.232  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGE---CRKSIEACNKVLDANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  522 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~---~~~A~~~~~~al~~dp-~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l  522 (553)
                      ..+.+|+|.|+.+...   -.+++..+...++.+| ..-..+|.+|.+++++|+|++|+++.+.+|+.+|+|. .+..+.
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~-QA~~Lk  117 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK-QVGALK  117 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH-HHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH-HHHHHH
Confidence            5678999999999875   4579999999999888 5678999999999999999999999999999999984 455544


Q ss_pred             HHHHHHH
Q 008788          523 SKLKKQR  529 (553)
Q Consensus       523 ~~l~~~~  529 (553)
                      ..++.++
T Consensus       118 ~~Ie~~i  124 (144)
T 1y8m_A          118 SMVEDKI  124 (144)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.96  E-value=7.3e-05  Score=75.07  Aligned_cols=109  Identities=13%  Similarity=0.095  Sum_probs=81.7

Q ss_pred             HHhhhccccc---cCCHHHHHHHHHHHHHHhhccCCCChhHH---------------------HH------------Hhh
Q 008788          401 IRVTGNRLFK---EGKFELAKAKYEKVLRDFNHVNPQDDEEG---------------------KV------------FVG  444 (553)
Q Consensus       401 ~k~~G~~~~~---~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~---------------------~~------------~~~  444 (553)
                      +.-+|..++.   ...+.+|+.+|++|++    ++|....-.                     ..            ...
T Consensus       199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~----lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~  274 (372)
T 3ly7_A          199 NFYQAHDYLLHGDDKSLNRASELLGEIVQ----SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN  274 (372)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence            3344444443   3456899999999998    566542110                     00            011


Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       445 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ....+|.-+|.+++..|++++|+..+++|+.++| +.-+|..+|.++...|++++|++.|.+|+.++|..
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            1223555677778888999999999999999997 57888999999999999999999999999999984

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.86  E-value=6.8e-05  Score=72.42  Aligned_cols=88  Identities=11%  Similarity=0.052  Sum_probs=72.8

Q ss_pred             CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-HHHHHH
Q 008788          413 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-----GECRKSIEACNKVLDANPAH-VKGLYR  486 (553)
Q Consensus       413 ~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl-----~~~~~A~~~~~~al~~dp~n-~ka~~r  486 (553)
                      ....|....++|++    ++|..         +...+|.-+|..|.+.     |+.++|..++++||+++|+. ..+++.
T Consensus       178 ~l~~A~a~lerAle----LDP~~---------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~  244 (301)
T 3u64_A          178 TVHAAVMMLERACD----LWPSY---------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHIT  244 (301)
T ss_dssp             HHHHHHHHHHHHHH----HCTTH---------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHH
T ss_pred             hHHHHHHHHHHHHH----hCCCc---------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHH
Confidence            34555555666666    45532         1256899999999996     99999999999999999975 999999


Q ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHhCCC
Q 008788          487 RGMAYMAL-GEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       487 ~g~a~~~l-g~~~~A~~~l~~al~l~P~  513 (553)
                      .|..+... +++++|.+.|++|+.++|.
T Consensus       245 YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          245 YADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            99999885 9999999999999999886

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.78  E-value=0.00012  Score=84.46  Aligned_cols=107  Identities=22%  Similarity=0.312  Sum_probs=84.2

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP-  478 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp-  478 (553)
                      .+...|+.++..|+|++|+..|.+|-                       .|..+|.|+.++|+|++|++.+.+|...++ 
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA~-----------------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhh-----------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence            45678999999999999999998862                       467788888888889999888888855443 


Q ss_pred             ------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008788          479 ------------------------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRR  530 (553)
Q Consensus       479 ------------------------~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~  530 (553)
                                              .++..+..++..|...|.|++|+..|+++|.++|.+ ..+..+|..+..+.+
T Consensus      1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH-~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH-MGMFTELAILYSKFK 1328 (1630)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH-hHHHHHHHHHHHhCC
Confidence                                    245566678888999999999999999999999886 456666666555443

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=97.74  E-value=5.9e-05  Score=78.20  Aligned_cols=76  Identities=13%  Similarity=0.151  Sum_probs=64.6

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~  124 (553)
                      ++.||.|+++|+++ .||+.|+++.      +.++.+.+|.++  + |+.+|.||++|+.++|.+..         +   
T Consensus       155 a~~gD~V~id~~~~-~dG~~~~~~~------~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF---------a---  212 (433)
T 3gty_X          155 AEAGDLVRVNMEVY-NEEGKKLTSR------EYEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY---------E---  212 (433)
T ss_dssp             CCTTSEEEEEEEEE-CTTSCEEEEE------EEEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE---------T---
T ss_pred             cCCCCEEEEEEEEE-ECCEECcCCC------CCCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee---------C---
Confidence            68999999999998 6999999764      367888999887  4 99999999999999999843         1   


Q ss_pred             CCCCCCCCeEEEEEEEEeeecccc
Q 008788          125 PSTFPKDEELHFEIEMIDFAKAKI  148 (553)
Q Consensus       125 ~~~i~~~~~l~~~v~l~~~~~~~~  148 (553)
                            |.+..|.|+|..+.....
T Consensus       213 ------Gk~a~F~VtV~~Ik~~~l  230 (433)
T 3gty_X          213 ------GKKYTYKLEVEEVYKRTL  230 (433)
T ss_dssp             ------TEEEEEEEEEEEEEEECC
T ss_pred             ------CCeEEEEEEEEEEEEecC
Confidence                  789999999999976543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.66  E-value=0.00011  Score=64.03  Aligned_cols=79  Identities=11%  Similarity=0.075  Sum_probs=61.3

Q ss_pred             HHHHhhhccccccC---CHHHHHHHHHHHHHHhhccC-CCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          399 EKIRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (553)
Q Consensus       399 ~~~k~~G~~~~~~g---~~~~A~~~Y~~Al~~l~~~~-~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (553)
                      +...+.|..+.+..   ++.+|+..+...++    .. |.          ....+++|+|..|+++++|.+|+++|+++|
T Consensus        33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~----~~~p~----------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL   98 (152)
T 1pc2_A           33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLP----KGSKE----------EQRDYVFYLAVGNYRLKEYEKALKYVRGLL   98 (152)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH----HSCHH----------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh----cCCcc----------chHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            44556666777666   67788888888777    22 21          125789999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHH
Q 008788          475 DANPAHVKGLYRRGMAY  491 (553)
Q Consensus       475 ~~dp~n~ka~~r~g~a~  491 (553)
                      +++|+|..|..-+-.+-
T Consensus        99 ~ieP~n~QA~~Lk~~ie  115 (152)
T 1pc2_A           99 QTEPQNNQAKELERLID  115 (152)
T ss_dssp             HHCTTCHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHH
Confidence            99999998876655443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.64  E-value=0.00022  Score=82.29  Aligned_cols=107  Identities=19%  Similarity=0.147  Sum_probs=82.7

Q ss_pred             HhhhccccccCCHHHHHHHHHHHHHHhh-------ccCCCChhHHH-HHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788          402 RVTGNRLFKEGKFELAKAKYEKVLRDFN-------HVNPQDDEEGK-VFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (553)
Q Consensus       402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~-------~~~~~~~ee~~-~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (553)
                      .+.|..+...|.|++|...|+++-....       .+...+ +..+ .-+-....+|+++|.++..+|+|++|+..|.+|
T Consensus      1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nld-rAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A         1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLD-RAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence            4568899999999999999998743211       111111 0000 011123578999999999999999999999776


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       474 l~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                           +++.+|++.|.++.++|+|++|++.|..|.+.+++.
T Consensus      1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A         1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred             -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc
Confidence                 899999999999999999999999999999988663

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=97.63  E-value=0.00011  Score=76.19  Aligned_cols=74  Identities=9%  Similarity=0.081  Sum_probs=62.8

Q ss_pred             CCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCce
Q 008788          168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE  247 (553)
Q Consensus       168 ~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~~  247 (553)
                      .++.||.|+++|+++ .||..|+++. +.++.+.+|++.  + |+++|.||++||+..|.+.-             ++.+
T Consensus       154 ~a~~gD~V~id~~~~-~dG~~~~~~~-~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF-------------aGk~  215 (433)
T 3gty_X          154 PAEAGDLVRVNMEVY-NEEGKKLTSR-EYEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY-------------EGKK  215 (433)
T ss_dssp             CCCTTSEEEEEEEEE-CTTSCEEEEE-EEEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE-------------TTEE
T ss_pred             ccCCCCEEEEEEEEE-ECCEECcCCC-CCCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee-------------CCCe
Confidence            467899999999996 6899998754 368888899887  4 99999999999999999832             4789


Q ss_pred             EEEEEEEeeeee
Q 008788          248 VHFEVELVHLIQ  259 (553)
Q Consensus       248 l~~~v~l~~~~~  259 (553)
                      ..|.|+|.++..
T Consensus       216 a~F~VtV~~Ik~  227 (433)
T 3gty_X          216 YTYKLEVEEVYK  227 (433)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             EEEEEEEEEEEE
Confidence            999999999953

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.59  E-value=0.00016  Score=74.59  Aligned_cols=77  Identities=17%  Similarity=0.094  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      .|...+.++...++|+.|..+... |.   .++.-+..+...|...|+|++|+..|++++.+++.+. .+..+|..+-.+
T Consensus       179 ~Wk~v~~aCv~~~ef~lA~~~~l~-L~---~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~-~~ftel~il~~k  253 (449)
T 1b89_A          179 TWKEVCFACVDGKEFRLAQMCGLH-IV---VHADELEELINYYQDRGYFEELITMLEAALGLERAHM-GMFTELAILYSK  253 (449)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHTTTT-TT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH-HHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHcCcHHHHHHHHHH-HH---hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHH-HHHHHHHHHHHh
Confidence            444444444455555555332221 22   2333344566789999999999999999999999874 577777666554


Q ss_pred             HH
Q 008788          529 RR  530 (553)
Q Consensus       529 ~~  530 (553)
                      .+
T Consensus       254 y~  255 (449)
T 1b89_A          254 FK  255 (449)
T ss_dssp             TC
T ss_pred             cC
Confidence            43

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.57  E-value=0.00047  Score=70.85  Aligned_cols=118  Identities=13%  Similarity=0.132  Sum_probs=88.0

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc------------------CCCChhHH-HH------------Hh
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV------------------NPQDDEEG-KV------------FV  443 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~------------------~~~~~ee~-~~------------~~  443 (553)
                      -.....+...|..+++.|+|++|+..|.+++......                  .+.+.+.. +.            ..
T Consensus        52 ~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  131 (434)
T 4b4t_Q           52 NEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV  131 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence            3455667788888888888888888888777654322                  11121111 00            11


Q ss_pred             hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788          444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDA------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (553)
Q Consensus       444 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P  512 (553)
                      .+...++.++|.+|..+|+|.+|+..+.+++..      .+..+.++...+.+|..+++|++|+..|++++.+.+
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            123568899999999999999999999999876      244567899999999999999999999999998743

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.55  E-value=0.00056  Score=72.09  Aligned_cols=111  Identities=15%  Similarity=0.135  Sum_probs=61.3

Q ss_pred             HHHHHhhhccccc----cCCHHHHHHHHHHHHHHhh----------ccC----CCChhHH-----HHHhhhhhHHHHHHH
Q 008788          398 AEKIRVTGNRLFK----EGKFELAKAKYEKVLRDFN----------HVN----PQDDEEG-----KVFVGKRNLLHLNVA  454 (553)
Q Consensus       398 a~~~k~~G~~~~~----~g~~~~A~~~Y~~Al~~l~----------~~~----~~~~ee~-----~~~~~~~~~~~~nla  454 (553)
                      +..+...|..++.    .+++.+|+..|++|++.-.          ...    +.+.++.     +........+++++|
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg  118 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLG  118 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3455666666666    7888888888888776200          000    1111100     001111234556666


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 008788          455 ACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       455 ~~~~k----l~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~----lg~~~~A~~~l~~al~l  510 (553)
                      .+|..    .+++++|+.++.++++.  .++.+++.+|.+|..    .+++++|+++|+++++.
T Consensus       119 ~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~  180 (490)
T 2xm6_A          119 VMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ  180 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            66666    55666666666666553  356666666666665    56666666666666654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.55  E-value=0.00063  Score=58.59  Aligned_cols=92  Identities=13%  Similarity=0.057  Sum_probs=75.0

Q ss_pred             CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY  491 (553)
Q Consensus       412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~  491 (553)
                      +++.+|+..|++|.+    ....             .++  +|.+|.....+++|+.++.++.+.  .++.|++++|.+|
T Consensus         9 ~d~~~A~~~~~~aa~----~g~~-------------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y   67 (138)
T 1klx_A            9 KDLKKAIQYYVKACE----LNEM-------------FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFY   67 (138)
T ss_dssp             HHHHHHHHHHHHHHH----TTCT-------------THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHc----CCCH-------------hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence            578999999999988    3321             123  999999999999999999999987  6899999999999


Q ss_pred             HH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788          492 MA----LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       492 ~~----lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~  527 (553)
                      ..    .+++++|+.+|++|.+..  + ..+...|..+-.
T Consensus        68 ~~G~g~~~d~~~A~~~~~~Aa~~g--~-~~a~~~Lg~~y~  104 (138)
T 1klx_A           68 ENGKYVKKDLRKAAQYYSKACGLN--D-QDGCLILGYKQY  104 (138)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHH
T ss_pred             HcCCCCCccHHHHHHHHHHHHcCC--C-HHHHHHHHHHHH
Confidence            99    899999999999999873  2 345555554433

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.54  E-value=0.00037  Score=72.93  Aligned_cols=100  Identities=13%  Similarity=0.083  Sum_probs=57.5

Q ss_pred             HHhhhccccccC---CHHHHHHHHHHHHHHhhccCCCCh--------------------hH-----HHHHhhhhhHHHHH
Q 008788          401 IRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVNPQDD--------------------EE-----GKVFVGKRNLLHLN  452 (553)
Q Consensus       401 ~k~~G~~~~~~g---~~~~A~~~Y~~Al~~l~~~~~~~~--------------------ee-----~~~~~~~~~~~~~n  452 (553)
                      +...|..+.+.|   ++.+|+..|++|++    ..+.+.                    ++     .+.. .....+++|
T Consensus       179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~----~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~  253 (452)
T 3e4b_A          179 YVELATVYQKKQQPEQQAELLKQMEAGVS----RGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVS  253 (452)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH----TTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHH
T ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHH
Confidence            456677777788   99999999999987    333321                    00     0011 222345555


Q ss_pred             HHHH-H--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHH
Q 008788          453 VAAC-L--LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-----EFEEAQRDFEMMM  508 (553)
Q Consensus       453 la~~-~--~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg-----~~~~A~~~l~~al  508 (553)
                      +|.+ +  ...+++.+|+.++.++++.  .++.|++.+|.+|. .|     ++++|+.+|++|.
T Consensus       254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          254 LAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             HHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence            5555 2  2445566666666665543  35566666666555 33     5666666666655

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.45  E-value=0.0015  Score=57.34  Aligned_cols=101  Identities=15%  Similarity=0.126  Sum_probs=77.4

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN---  477 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d---  477 (553)
                      +++....++..+.|+.|+-.+..++...+. +++-     .-......++..+|..++..++|.+|...|.+||...   
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~-~~~~-----~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l   96 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNN-NPEL-----FSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL   96 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-STTS-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcC-Cccc-----ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence            456677788899999999999998886432 2210     0012235688899999999999999999999998552   


Q ss_pred             CCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788          478 PAH----------------------VKGLYRRGMAYMALGEFEEAQRDFEMM  507 (553)
Q Consensus       478 p~n----------------------~ka~~r~g~a~~~lg~~~~A~~~l~~a  507 (553)
                      +.+                      ....|+.|.||..++++++|+..++..
T Consensus        97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A           97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             --------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             hcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            111                      257799999999999999999988754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.40  E-value=0.00048  Score=70.78  Aligned_cols=104  Identities=13%  Similarity=0.082  Sum_probs=85.8

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +......|+.++..|+|.+|+..|++++..+.......         ....++++++.+|+.+++|.+|...+++++.+.
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP---------SLVDVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch---------hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            45566789999999999999999999998765543322         236789999999999999999999999999774


Q ss_pred             C---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          478 P---AH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       478 p---~n----~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      +   +.    ...+...|..+...++|++|..+|..+++.
T Consensus       206 ~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          206 NSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             hcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            2   22    355677899999999999999999999875

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.33  E-value=0.0014  Score=68.58  Aligned_cols=88  Identities=11%  Similarity=0.023  Sum_probs=46.2

Q ss_pred             HHhhhcc-c--cccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-----CHHHHHHHHHH
Q 008788          401 IRVTGNR-L--FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-----ECRKSIEACNK  472 (553)
Q Consensus       401 ~k~~G~~-~--~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~-----~~~~A~~~~~~  472 (553)
                      +...|.. +  ...+++.+|+..|++|++.    .  +           ..+++|+|.+|. .|     ++.+|+.++.+
T Consensus       251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g--~-----------~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~  312 (452)
T 3e4b_A          251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAA----D--Q-----------PRAELLLGKLYY-EGKWVPADAKAAEAHFEK  312 (452)
T ss_dssp             HHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----T--C-----------HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----C--C-----------HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence            3444554 2  3577888888888887761    1  1           234445555554 22     45555555555


Q ss_pred             HHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 008788          473 VLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMK  509 (553)
Q Consensus       473 al~~dp~n~ka~~r~g~a~~~----lg~~~~A~~~l~~al~  509 (553)
                      |.   +.++.|++++|.+|..    ..++++|+.+|++|.+
T Consensus       313 Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  350 (452)
T 3e4b_A          313 AV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR  350 (452)
T ss_dssp             TT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred             Hh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence            54   4455555555544444    2245555555554444

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.33  E-value=0.0038  Score=63.81  Aligned_cols=127  Identities=16%  Similarity=0.157  Sum_probs=98.8

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccC-------CCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-------PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA  469 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~-------~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  469 (553)
                      ..+.+...|......++...|...|.+|+..+..--       ++-..+...+.+....+...++.+++.+|++.+|+..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            345555666666678899999999999999653210       1112334556677778888899999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHH
Q 008788          470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK-------VDKSSEPDATAALSKL  525 (553)
Q Consensus       470 ~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~-------l~P~~~~~~~~~l~~l  525 (553)
                      +..++..+|-+..+|..+-.||...|+..+|++.|+++-+       ++|+  ++.+.....+
T Consensus       194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~--~~l~~l~~~i  254 (388)
T 2ff4_A          194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG--PTLRALNERI  254 (388)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC--HHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHH
Confidence            9999999999999999999999999999999999988754       4786  3455444443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.29  E-value=0.0014  Score=64.57  Aligned_cols=86  Identities=14%  Similarity=0.035  Sum_probs=71.2

Q ss_pred             CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCH
Q 008788          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA----------NPAHV  481 (553)
Q Consensus       412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~----------dp~n~  481 (553)
                      +++..|...|+++..    ..|...         ...+++|   |++++|+|++|...++.+++.          +|+|+
T Consensus       192 ~~~q~A~~~f~El~~----~~p~~~---------~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~  255 (310)
T 3mv2_B          192 ETATSNFYYYEELSQ----TFPTWK---------TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP  255 (310)
T ss_dssp             STTTHHHHHHHHHHT----TSCSHH---------HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred             ccHHHHHHHHHHHHH----hCCCcc---------cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence            489999999999766    333210         1235555   899999999999999988877          58999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      .++.++..+...+|+  +|.+.++++.+++|++.
T Consensus       256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp  287 (310)
T 3mv2_B          256 TFLANQITLALMQGL--DTEDLTNQLVKLDHEHA  287 (310)
T ss_dssp             HHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred             HHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence            999999999999998  89999999999999984

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.24  E-value=0.00046  Score=71.66  Aligned_cols=93  Identities=11%  Similarity=0.053  Sum_probs=71.9

Q ss_pred             HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (553)
Q Consensus       394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (553)
                      ....+..+.+.|..+..+|+|++|+..|+++|.......+.+       .......++|+|..|..+|+|++|+.++.+|
T Consensus       325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            345678888999999999999999999999999876654433       2224678999999999999999999999999


Q ss_pred             HhhC-----CCCH---HHHHHHHHHHHH
Q 008788          474 LDAN-----PAHV---KGLYRRGMAYMA  493 (553)
Q Consensus       474 l~~d-----p~n~---ka~~r~g~a~~~  493 (553)
                      +++-     |+++   .++..++.|+..
T Consensus       398 l~i~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          398 FDIMRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            9873     4443   334445555543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.24  E-value=0.00087  Score=53.51  Aligned_cols=68  Identities=16%  Similarity=0.173  Sum_probs=57.5

Q ss_pred             HHHHHhhhccccccCC---HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGK---FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~---~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (553)
                      +..+...|..++..++   ..+|...+++||.    .+|.+           ..+++.+|..+++.|+|.+|+.++.+++
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~----~dp~~-----------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l   70 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ----LEPYN-----------EAALSLIANDHFISFRFQEAIDTWVLLL   70 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----HCcCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445566777764443   7999999999999    78887           7789999999999999999999999999


Q ss_pred             hhCCCC
Q 008788          475 DANPAH  480 (553)
Q Consensus       475 ~~dp~n  480 (553)
                      +.+|.+
T Consensus        71 ~~~p~~   76 (93)
T 3bee_A           71 DSNDPN   76 (93)
T ss_dssp             TCCCTT
T ss_pred             hhCCCC
Confidence            999974

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.16  E-value=0.00074  Score=70.10  Aligned_cols=76  Identities=11%  Similarity=0.022  Sum_probs=62.9

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (553)
                      ...+..+.+.|..+..+|+|++|+..|++||......-+.+       .......++|+|..|..+|+|++|+.++.+||
T Consensus       337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-------SLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            34567788899999999999999999999999876643332       12236789999999999999999999999999


Q ss_pred             hhC
Q 008788          475 DAN  477 (553)
Q Consensus       475 ~~d  477 (553)
                      ++.
T Consensus       410 ~i~  412 (433)
T 3qww_A          410 AIM  412 (433)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            873

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.12  E-value=0.0014  Score=63.21  Aligned_cols=53  Identities=17%  Similarity=0.176  Sum_probs=49.1

Q ss_pred             CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC
Q 008788          462 ECRKSIEACNKVLDANPA--HVKGLYRRGMAYMAL-----GEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       462 ~~~~A~~~~~~al~~dp~--n~ka~~r~g~a~~~l-----g~~~~A~~~l~~al~l~P~~  514 (553)
                      ..+.|.....+|+++||+  +..||.-+|..|..+     |+.+.|.++|++|++++|+.
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~  237 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH  237 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence            368899999999999999  677999999999996     99999999999999999974

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=96.89  E-value=0.0054  Score=60.29  Aligned_cols=99  Identities=7%  Similarity=-0.032  Sum_probs=75.3

Q ss_pred             HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--
Q 008788          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA--  479 (553)
Q Consensus       402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~--  479 (553)
                      .-.|..++..|++++|++.+.+++.    ..+..         ....++..++.+++++++.+.|.+.+.+..+.+|+  
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~----~~~~~---------~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~  170 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGID----NDEAE---------GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV  170 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHT----SSCST---------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhc----cCCCc---------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc
Confidence            4677888888999999999999877    34311         11567788889999999999999999998888883  


Q ss_pred             --CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHhCCC
Q 008788          480 --HVKGLYRRGMA--YMALG--EFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       480 --n~ka~~r~g~a--~~~lg--~~~~A~~~l~~al~l~P~  513 (553)
                        +-..+..++.+  .+..|  ++.+|...|+.+.+..|+
T Consensus       171 ~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          171 SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred             ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence              34445555555  55556  899999999998877775

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.75  E-value=0.028  Score=48.34  Aligned_cols=127  Identities=8%  Similarity=0.007  Sum_probs=92.6

Q ss_pred             ChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 008788          390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA  469 (553)
Q Consensus       390 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  469 (553)
                      +.+.-+..+..+-..|+.+-. +-.++-+..|++|+..+   .|..    .......+.++.+.|.- ..+++.++|.+.
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d-~~l~rlrd~YerAia~~---Pp~k----~~~wrrYI~LWIrYA~~-~ei~D~d~aR~v   82 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSD-ALLNKLIGRYSQAIEAL---PPDK----YGQNESFARIQVRFAEL-KAIQEPDDARDY   82 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCH-HHHHHHHHHHHHHHHHS---CGGG----GTTCHHHHHHHHHHHHH-HHHHCGGGCHHH
T ss_pred             CHHHHHHHHHHHHHcCCCchh-hHHHHHHHHHHHHHHcC---Cccc----cccHHHHHHHHHHHHHH-HHhcCHHHHHHH
Confidence            455566666666666776554 45578889999999842   2211    11222335677777755 567999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       470 ~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      ++.++.+....+|.|...|+--.+.|+...|++.+.+|+.+.|....-...+++.+
T Consensus        83 y~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl  138 (161)
T 4h7y_A           83 FQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL  138 (161)
T ss_dssp             HHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence            99999998888999999999999999999999999999999997543333344443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.74  E-value=0.0012  Score=68.14  Aligned_cols=52  Identities=15%  Similarity=0.059  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM  507 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~a  507 (553)
                      ..+.++|.++...|.|++|+.+++++        ..|.++|.|+.++|+|++|++.+++|
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence            36777888888888888888888766        46677888888888888888888877

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.59  E-value=0.0097  Score=49.92  Aligned_cols=45  Identities=13%  Similarity=0.158  Sum_probs=39.3

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008788          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (553)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a  490 (553)
                      ...+++.+|..++|+++|.+|+++|+.+|+++|+|..|.--+..+
T Consensus        73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           73 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999999886555443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.39  E-value=0.0089  Score=52.49  Aligned_cols=94  Identities=13%  Similarity=0.165  Sum_probs=63.7

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCC--------hhHH--HHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD--------DEEG--KVFVGKRNLLHLNVAACLLKLGECRKS  466 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~--------~ee~--~~~~~~~~~~~~nla~~~~kl~~~~~A  466 (553)
                      .++.+.-.|+.+|..++|.+|...|++||.....+....        ....  .....-...+.+.+|.||.+++++.+|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            466777899999999999999999999998665321100        0000  000011246888999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788          467 IEACNKVLDANPAHVKGLYRRGMAY  491 (553)
Q Consensus       467 ~~~~~~al~~dp~n~ka~~r~g~a~  491 (553)
                      +.....+-. ....++.-..+|+.|
T Consensus       142 i~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          142 IAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             HHHHhcCCc-hhcCHHHHHHHHHHh
Confidence            998654322 235777777777654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.34  E-value=0.012  Score=49.50  Aligned_cols=45  Identities=13%  Similarity=0.092  Sum_probs=39.4

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008788          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (553)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a  490 (553)
                      ...|++.+|..+.|+|+|.+|+++|+.+|+++|+|..|.--+..+
T Consensus        77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999999876555443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.32  E-value=0.02  Score=48.82  Aligned_cols=44  Identities=14%  Similarity=0.093  Sum_probs=38.5

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008788          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  489 (553)
Q Consensus       446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~  489 (553)
                      +..|++.+|..+.|+++|.+|+++|+.+|+++|+|..|.--+..
T Consensus        76 ~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~  119 (144)
T 1y8m_A           76 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  119 (144)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            35689999999999999999999999999999999887655443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.36  E-value=0.031  Score=61.33  Aligned_cols=58  Identities=7%  Similarity=-0.075  Sum_probs=29.7

Q ss_pred             hhhccccccCCHHHHH-HHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          403 VTGNRLFKEGKFELAK-AKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~-~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+...++..+|+ ..|.+|+.    ..|.+           ..+++.+|....+.+++++|...+++++.
T Consensus       348 ~ya~~~~~~~~~~~a~r~il~rAi~----~~P~s-----------~~Lwl~~a~~ee~~~~~e~aR~iyek~l~  406 (679)
T 4e6h_A          348 NMANYQGEKNTDSTVITKYLKLGQQ----CIPNS-----------AVLAFSLSEQYELNTKIPEIETTILSCID  406 (679)
T ss_dssp             HHHHHHHHHSCCTTHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4444444556666776 77777776    33433           23344444444444444444444444443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.35  E-value=0.18  Score=55.24  Aligned_cols=112  Identities=7%  Similarity=0.001  Sum_probs=64.7

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhc-------cCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNH-------VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~-------~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+....+.|++++|...|++++..+..       ..|.+++....+......+|...+....+.+..+.|...+.+|++
T Consensus       383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~  462 (679)
T 4e6h_A          383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR  462 (679)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444445678999999999999986421       113221111111112233555556555666666777777777766


Q ss_pred             h-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC
Q 008788          476 A-NPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       476 ~-dp~n~ka~~r~g~a~~~lg-~~~~A~~~l~~al~l~P~~  514 (553)
                      . .+...+.|...|....+.+ +++.|+..|+++++..|++
T Consensus       463 ~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~  503 (679)
T 4e6h_A          463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD  503 (679)
T ss_dssp             TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred             hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence            5 3344555555555555544 3667777777777766664

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.32  E-value=0.11  Score=57.20  Aligned_cols=59  Identities=17%  Similarity=0.172  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM  507 (553)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~a  507 (553)
                      ++.-.|.-++..++|+.|+..+.+|...-|.....||+++.||..+++|+.|+-.++-+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44445666677899999999999999999999999999999999999999999988877

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.71  E-value=0.37  Score=42.16  Aligned_cols=67  Identities=15%  Similarity=0.095  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hC---------------CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLD--AN---------------PAHVKG-LYRRGMAYMALGEFEEAQRDFEMMM  508 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~--~d---------------p~n~ka-~~r~g~a~~~lg~~~~A~~~l~~al  508 (553)
                      +...+--++||.++++|+.|+......|+  .|               |.+..- +..+|..+.++|+-++|+.+|.+..
T Consensus        62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf  141 (242)
T 3kae_A           62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF  141 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence            45566779999999999999999999992  22               333333 3446999999999999999999999


Q ss_pred             HhCCC
Q 008788          509 KVDKS  513 (553)
Q Consensus       509 ~l~P~  513 (553)
                      ..+|=
T Consensus       142 ~~~~l  146 (242)
T 3kae_A          142 GKSFL  146 (242)
T ss_dssp             HHCCC
T ss_pred             CCccc
Confidence            88874

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.04  E-value=0.26  Score=49.97  Aligned_cols=98  Identities=15%  Similarity=0.096  Sum_probs=78.6

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN---PA  479 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d---p~  479 (553)
                      ..|..++..|+|.+|+..+.+.++.+...+.         ..+...+|......|..++++.++...+.+|....   +.
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~  174 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDD---------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC  174 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence            6788899999999999999999998766432         23457789999999999999999999999887553   12


Q ss_pred             C--HHH--HHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 008788          480 H--VKG--LYRRGMAYM-ALGEFEEAQRDFEMMMK  509 (553)
Q Consensus       480 n--~ka--~~r~g~a~~-~lg~~~~A~~~l~~al~  509 (553)
                      .  ..|  ..--|..|+ ..++|..|..+|-.+++
T Consensus       175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            2  233  344588999 89999999999998874

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.62  E-value=0.41  Score=45.40  Aligned_cols=61  Identities=18%  Similarity=0.158  Sum_probs=56.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 008788          456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP  516 (553)
Q Consensus       456 ~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~  516 (553)
                      .+++.+...+|+..+...++.+|.|++.--.+-+.+.-.|+|+.|..-++.+.+++|+...
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            4567899999999999999999999999999999999999999999999999999998543

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=93.62  E-value=0.54  Score=45.73  Aligned_cols=114  Identities=14%  Similarity=0.119  Sum_probs=74.0

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc--CC-----HHHHHHHHHH
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--GE-----CRKSIEACNK  472 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl--~~-----~~~A~~~~~~  472 (553)
                      ...+.|-.++..|+|.+|+..|+.+|..+.-+.-.+++|.++++++...|...+-.+.+.+  .+     .++..+.++-
T Consensus       104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lEL  183 (320)
T 3mkr_B          104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEM  183 (320)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHH
Confidence            3557899999999999999999999997765555666666666666555543333233333  21     1233333443


Q ss_pred             HHhh-----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          473 VLDA-----NPAHV-KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       473 al~~-----dp~n~-ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      |.-.     .|.+. -++..--...++.++|.-|...-++.|++.|.
T Consensus       184 AAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~  230 (320)
T 3mkr_B          184 AAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK  230 (320)
T ss_dssp             HHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred             HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            3322     33222 23333344566889999999999999999986

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=93.33  E-value=0.29  Score=47.57  Aligned_cols=118  Identities=14%  Similarity=0.087  Sum_probs=72.1

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCH----HHHHHHHHH
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC----RKSIEACNK  472 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~----~~A~~~~~~  472 (553)
                      ......+.|-.++..|+|.+|+..|+.+|..+.-+.-.+++|.++++++...|...+-.+.+.+.+-    +...+.++-
T Consensus       113 ~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lEL  192 (325)
T 3mv2_A          113 VVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLEL  192 (325)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            3333456899999999999999999999987665554555555556655554433332222222110    111222222


Q ss_pred             HH-----hhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          473 VL-----DANPAHV-KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       473 al-----~~dp~n~-ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      |.     ++.|.+. -++..--...++.++|.-|....++.|++.|..
T Consensus       193 AAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~  240 (325)
T 3mv2_A          193 AAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG  240 (325)
T ss_dssp             HHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred             HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence            22     2223222 233333455668899999999999999999963

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=93.01  E-value=0.19  Score=50.39  Aligned_cols=68  Identities=13%  Similarity=0.116  Sum_probs=55.1

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k  482 (553)
                      ..+..++..|++++|+..+++|+.    ++| +           ...|..+|.++...|++++|++.+.+|+.++|... 
T Consensus       282 alal~~l~~gd~d~A~~~l~rAl~----Ln~-s-----------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-  344 (372)
T 3ly7_A          282 IKAVSALVKGKTDESYQAINTGID----LEM-S-----------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-  344 (372)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH----HCC-C-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHh----cCC-C-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-
Confidence            345556668999999999999999    444 2           34677889999999999999999999999999664 


Q ss_pred             HHHHH
Q 008788          483 GLYRR  487 (553)
Q Consensus       483 a~~r~  487 (553)
                      .|+..
T Consensus       345 t~~~~  349 (372)
T 3ly7_A          345 TLYWI  349 (372)
T ss_dssp             HHHHH
T ss_pred             hHHHH
Confidence            45443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=91.48  E-value=2  Score=40.69  Aligned_cols=64  Identities=17%  Similarity=0.238  Sum_probs=52.5

Q ss_pred             hccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008788          405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  483 (553)
Q Consensus       405 G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka  483 (553)
                      ...+++.++.++|+......++    .+|.+           ..+...+...+.-.|+|+.|...++.+.+++|.....
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR----~~P~d-----------a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIK----ASPKD-----------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHH----TCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHH----hCCcC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            3467899999999999999999    88988           4444555555556899999999999999999987653

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.29  E-value=0.43  Score=49.09  Aligned_cols=98  Identities=14%  Similarity=0.019  Sum_probs=76.0

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN---  477 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d---  477 (553)
                      +...|..+++.|++..|++.|.++.......  .          ....++++...+++..++|..+..++++|..+-   
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~--~----------~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~  201 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAIST--G----------AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG  201 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC--C----------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh--H----------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence            4578888999999999999999988754322  1          236788888889999999999999999987552   


Q ss_pred             CC-CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          478 PA-HV--KGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       478 p~-n~--ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      ++ ..  +.....|.++...++|..|-..|..++.-
T Consensus       202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            21 12  33445678888899999999999887654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.06  E-value=1.4  Score=46.17  Aligned_cols=77  Identities=8%  Similarity=-0.004  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~  524 (553)
                      ..++.++|....-...+..|..+|.+|+.++|++..+|..+|......+++-+|+-+|.+++....... .++..|..
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~-~a~~nL~~  228 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP-AASTNLQK  228 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH-HHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh-hHHHHHHH
Confidence            457778888888888899999999999999999999999999999999999999999999998765553 34444433

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=90.85  E-value=0.32  Score=37.41  Aligned_cols=41  Identities=29%  Similarity=0.283  Sum_probs=34.9

Q ss_pred             Chhh-HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788          390 SFDG-IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (553)
Q Consensus       390 ~~~e-~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~  430 (553)
                      +..+ .++.|..+-.+|...=+.|+|.+|+.+|..|+++|..
T Consensus         2 ~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   43 (83)
T 2v6y_A            2 SAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ   43 (83)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            4444 5677888889999999999999999999999998754

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=90.34  E-value=4.3  Score=42.31  Aligned_cols=108  Identities=13%  Similarity=-0.028  Sum_probs=75.0

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHH----------HH---Hh----------------hhhhHHHH
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG----------KV---FV----------------GKRNLLHL  451 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~----------~~---~~----------------~~~~~~~~  451 (553)
                      +...+..+...|+.+.|...|.+|+..     |.+..-+          +.   +.                .....+|.
T Consensus       216 W~~ya~~~~~~~~~~~ar~i~erAi~~-----P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~  290 (493)
T 2uy1_A          216 YFFYSEYLIGIGQKEKAKKVVERGIEM-----SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRI  290 (493)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHH
Confidence            445566666788999999999999983     4432110          00   00                11124566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC
Q 008788          452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       452 nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg-~~~~A~~~l~~al~l~P~~  514 (553)
                      +.+....+.+..+.|...+.+| ...+.....|...|.....++ +.+.|+..|+.+++.-|++
T Consensus       291 ~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~  353 (493)
T 2uy1_A          291 NHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS  353 (493)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC
Confidence            6677776788899999999999 433345566666666666666 6999999999999988875

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=90.27  E-value=2.7  Score=43.90  Aligned_cols=39  Identities=8%  Similarity=0.069  Sum_probs=33.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR  486 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r  486 (553)
                      ..+|++.+..+...++.+.|...+.+|+.. |.+...++.
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~  251 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLY  251 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHH
Confidence            568899999999999999999999999999 987654443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=88.86  E-value=0.66  Score=51.04  Aligned_cols=59  Identities=24%  Similarity=0.297  Sum_probs=51.1

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (553)
                      .+..++..+..+|+|+.|+.+-++|+.    +.|.+           -.+|..||.||.++++|+.|+-..+..
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~----~aPse-----------F~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTE----LALDS-----------FESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHh----cCchh-----------hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            455667778889999999999999999    67766           679999999999999999999877765

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=86.57  E-value=1.2  Score=36.56  Aligned_cols=43  Identities=23%  Similarity=0.315  Sum_probs=36.2

Q ss_pred             CCChh-hHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788          388 GLSFD-GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (553)
Q Consensus       388 ~~~~~-e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~  430 (553)
                      .|+.. ..+..|..+..+|...=..++|.+|+.+|..|+++|..
T Consensus         7 ~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~   50 (117)
T 2cpt_A            7 GMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   50 (117)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            35544 56778888889999888999999999999999998754

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=86.13  E-value=0.83  Score=35.07  Aligned_cols=39  Identities=23%  Similarity=0.246  Sum_probs=33.9

Q ss_pred             hhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (553)
Q Consensus       392 ~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~  430 (553)
                      ...++.|..+-.+|...-+.|+|.+|+.+|.+|+++|..
T Consensus        13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A           13 VMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            345677888999999999999999999999999998754

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=86.09  E-value=0.94  Score=34.91  Aligned_cols=41  Identities=15%  Similarity=0.074  Sum_probs=33.8

Q ss_pred             ChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788          390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (553)
Q Consensus       390 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~  430 (553)
                      +....+..|..+..+|...=..|+|++|+.+|..|+++|..
T Consensus         5 ~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~   45 (85)
T 2v6x_A            5 STGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML   45 (85)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            33345677888888888888999999999999999997654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.00  E-value=5.9  Score=40.69  Aligned_cols=105  Identities=13%  Similarity=0.086  Sum_probs=75.5

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-  475 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~-  475 (553)
                      .+......++.++..|+|.+|.............  ..+       ...+..+++-....|+..++|..|...++++.. 
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~--~~~-------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~  206 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYG--SME-------MSEKIQFILEQMELSILKGDYSQATVLSRKILKK  206 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS--SSC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh--ccc-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3555567788889999999999998886653222  222       122366777788888899999999999998742 


Q ss_pred             --hCCCC--HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          476 --ANPAH--VKG--LYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       476 --~dp~n--~ka--~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                        -.+.+  .++  +...|..+.+.++|.+|-.+|..++..
T Consensus       207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          207 TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence              22333  334  444588888999999999999888754

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=84.40  E-value=2.2  Score=33.44  Aligned_cols=37  Identities=14%  Similarity=0.077  Sum_probs=32.3

Q ss_pred             HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (553)
Q Consensus       394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~  430 (553)
                      .++.|..+-.+|..+-+.++|.+|+.+|..|+++|..
T Consensus        11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~   47 (93)
T 1wfd_A           11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            4567788888999999999999999999999998765

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=84.22  E-value=7.5  Score=40.61  Aligned_cols=95  Identities=9%  Similarity=0.032  Sum_probs=69.2

Q ss_pred             hccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHH
Q 008788          405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKG  483 (553)
Q Consensus       405 G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d-p~n~ka  483 (553)
                      -+.+.+.|++++|...|++..+.  .+.|+            ...|+.+-.+|.+.|++++|.+.+.+..+.. .-+...
T Consensus       112 I~~~~~~g~~~~A~~l~~~M~~~--g~~Pd------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t  177 (501)
T 4g26_A          112 ARLAVAKDDPEMAFDMVKQMKAF--GIQPR------------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE  177 (501)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHT--TCCCC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHc--CCCCc------------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence            34556778888888888876551  12221            3567777777888899999999988877653 226777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Q 008788          484 LYRRGMAYMALGEFEEAQRDFEMMMKV--DKS  513 (553)
Q Consensus       484 ~~r~g~a~~~lg~~~~A~~~l~~al~l--~P~  513 (553)
                      |..+-.++.+.|++++|.+.|++..+.  .|+
T Consensus       178 y~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps  209 (501)
T 4g26_A          178 LAALLKVSMDTKNADKVYKTLQRLRDLVRQVS  209 (501)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence            888888899999999999988877653  555

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=81.60  E-value=2.5  Score=32.57  Aligned_cols=34  Identities=15%  Similarity=0.131  Sum_probs=28.9

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~  430 (553)
                      .|..+..++..+-+.|+|++|+.+|..|+++|..
T Consensus        15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~   48 (86)
T 4a5x_A           15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ   48 (86)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            5666777888888999999999999999997654

>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}

Probab=81.45  E-value=4.2  Score=41.56  Aligned_cols=92  Identities=21%  Similarity=0.152  Sum_probs=51.3

Q ss_pred             hhhHHHHHHHHHhhh--ccccccCC-HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 008788          391 FDGIMDEAEKIRVTG--NRLFKEGK-FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  467 (553)
Q Consensus       391 ~~e~~~~a~~~k~~G--~~~~~~g~-~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~  467 (553)
                      ..+++..|+.++.++  +.--+.-+ -+.|+.+|++|+++|+.+...++-+       ....++++|--      |+.|=
T Consensus       422 L~eKi~~AE~~~~k~e~~~n~~a~~yA~kAi~~Y~~Ai~~L~k~~~tdd~~-------~v~~~~~~ak~------yE~aG  488 (526)
T 2wb7_A          422 LQEKIDEAEQLLAKAKGMNNENAIEYAQGAIDEYKAAINDLQKAAQQDDYQ-------MFLNYLNAAKK------HEMAG  488 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHH-------HHHHHHHHHHH------HHHHH
T ss_pred             HHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCHH-------HHHHHHHHhhh------hhhcc
Confidence            455555666666665  22222223 3568999999999888876544321       13445555432      44444


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (553)
Q Consensus       468 ~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l  510 (553)
                      .++.               .|--....|..+.|..+-+.|-++
T Consensus       489 Dyy~---------------~AA~k~~yG~~eqAe~l~~~A~~~  516 (526)
T 2wb7_A          489 DYYV---------------NAARKALNGDLEQAKIDAEKAKEY  516 (526)
T ss_dssp             HHHH---------------HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHH---------------HHHHHHhcCccHHHHHHHHHHHHH
Confidence            4333               333345567777777766655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	553
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	3e-14
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	1e-11
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	7e-09
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-14
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	9e-14
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	1e-12
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	2e-08
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	1e-13
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	8e-13
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	2e-11
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	4e-10
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-12
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	2e-12
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	2e-10
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	4e-05
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	3e-12
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	7e-11
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	8e-08
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	8e-12
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	3e-11
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	2e-09
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	2e-11
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	5e-09
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	8e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	5e-11
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-10
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	3e-10
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	6e-08
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-08
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	2e-09
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	1e-04
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	4e-09
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	2e-08
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	1e-07
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	6e-09
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	7e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	1e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-08
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	2e-07
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	3e-05
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	6e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	4e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.001
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	5e-06
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	5e-06
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	0.002
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-05
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	7e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-04
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	1e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	4e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.001
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	0.003
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.004

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 67.4 bits (164), Expect = 3e-14
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           D+L DG +I+R  R G+G      P   + + +H +G                 +G+   
Sbjct: 3   DLLEDGGIIRRTKRRGEGY---SNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGED-- 57

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY-DKFLRPANVPEGAHIQWEIELLGF 380
                  +P G +  +  M   E  ++   P Y + +       +   A + +E+ L  F
Sbjct: 58  -----HDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 112

Query: 381 EK 382
           EK
Sbjct: 113 EK 114

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 59.7 bits (144), Expect = 1e-11
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 10/118 (8%)

Query: 29  GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
           G +++   R G G S P++G +V  H   R    V      +   G+G           I
Sbjct: 8   GGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHD-------I 60

Query: 89  LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA 146
            +G+ + +  M + E  +  + P+  +GE   P         + EL +E+ +  F KA
Sbjct: 61  PIGIDKALEKMQREEQCILHLGPRYGFGEAGKP---KFGIEPNAELIYEVTLKSFEKA 115

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 51.6 bits (123), Expect = 7e-09
 Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 149 IADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVP 208
           + +D G++++    G+G+  P     V+  +  + G                      +P
Sbjct: 4   LLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHD--IP 61

Query: 209 KGLEMGIGTMTREEKAVIYVTSQ--YLTPSPLMPVVEGCEEVHFEVELVHLIQ 259
            G++  +  M REE+ ++++  +  +         +E   E+ +EV L    +
Sbjct: 62  IGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 114

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 68.8 bits (167), Expect = 3e-14
 Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 1/154 (0%)

Query: 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL 448
           +     +++A  ++  G   FK GK+  A  +Y K++          ++E K        
Sbjct: 6   MDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 65

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
             LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE ++
Sbjct: 66  AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 125

Query: 509 KVDKSSEPDATAALSKLKKQRRKLKVRLENSLKG 542
           +V+  +   A   +   +K+ ++   R   +   
Sbjct: 126 EVNPQN-KAARLQIFMCQKKAKEHNERDRRTYAN 158

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 65.9 bits (160), Expect = 9e-14
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 7/116 (6%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            DG ++K   ++G+G      P   + + VHY G L N  K         + G    F+ 
Sbjct: 8   KDGGVLKLIKKEGQGV---VKPTTGTTVKVHYVGTLENGTKFDSSR----DRGDQFSFNL 60

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
           G G V +G+++ V  M  GE+A  T   DY Y     P  +P GA + +E+EL  +
Sbjct: 61  GRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW 116

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.8 bits (152), Expect = 1e-12
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 29  GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
           G ++K + + G G   P+ G  V  H      +G    +       +G      LG+  +
Sbjct: 10  GGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENG----TKFDSSRDRGDQFSFNLGRGNV 65

Query: 89  LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           + G   G+ TM KGEV+ F ++    YG+       P   P    L FE+E+ ++
Sbjct: 66  IKGWDLGVATMTKGEVAEFTIRSDYGYGDAGS----PPKIPGGATLIFEVELFEW 116

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILS-HREGEPYFFTFGKSEVPKG 210
           D GV+K +  EGQG   P     VK        +G    S    G+ + F  G+  V KG
Sbjct: 9   DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKG 68

Query: 211 LEMGIGTMTREEKAVIYVTSQYL-TPSPLMPVVEGCEEVHFEVELV 255
            ++G+ TMT+ E A   + S Y    +   P + G   + FEVEL 
Sbjct: 69  WDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELF 114

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 66.6 bits (161), Expect = 1e-13
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 5/146 (3%)

Query: 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL 448
            + +  +  A  I+  GN  FK+ +   A  KY++ L  F H    DD+          +
Sbjct: 8   YTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 67

Query: 449 -LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 507
             +LN+A C  K  +  K+I+  +KVL  +  +VK LY+ G+A M  G  EEA+ +    
Sbjct: 68  SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 127

Query: 508 MKVDKSSEPDATAALSKLKKQRRKLK 533
             ++    P+     +  +    KLK
Sbjct: 128 ASLN----PNNLDIRNSYELCVNKLK 149

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 8e-13
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 10/119 (8%)

Query: 29  GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
           G +++ +   G G + P++G  V         D +  +       G+G  +    G    
Sbjct: 8   GGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLE-- 65

Query: 89  LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147
                  I  M KGE S+  +KP   +G            P + EL +E+ +  F KAK
Sbjct: 66  -----RAIQRMEKGEHSIVYLKPSYAFGSVGKE---KFQIPPNAELKYELHLKSFEKAK 116

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 2e-11
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 11/121 (9%)

Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           DG +I+R    G+G      P   +++ V  +G   ++            +G+ L+    
Sbjct: 7   DGGIIRRIQTRGEGY---AKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLD---- 59

Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKF-LRPANVPEGAHIQWEIELLGFEKPK 384
              +P G E  ++ M  GE ++V   P YA+         +P  A +++E+ L  FEK K
Sbjct: 60  ---LPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAK 116

Query: 385 D 385
           +
Sbjct: 117 E 117

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 4e-10
 Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 4/114 (3%)

Query: 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKG 210
           +D G+++++   G+G+  P     V+  +     D          E         ++P G
Sbjct: 6   EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFE--IGEGENLDLPYG 63

Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPSPLMP--VVEGCEEVHFEVELVHLIQVRD 262
           LE  I  M + E +++Y+   Y   S       +    E+ +E+ L    + ++
Sbjct: 64  LERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKE 117

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (154), Expect = 1e-12
 Identities = 44/160 (27%), Positives = 87/160 (54%), Gaps = 1/160 (0%)

Query: 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL 448
           ++ +  ++++  ++  G   FKEGK++ A  +Y+K++    + +   +EE +     R  
Sbjct: 4   MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 63

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
            HLN+A C LKL     +IE+CNK L+ +  + KGL RRG A++A+ +FE A+ DF+ ++
Sbjct: 64  SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL 123

Query: 509 KVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSL 548
           ++  ++   A   L+  +++ R+   R +        R  
Sbjct: 124 QLYPNN-KAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 162

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 2e-12
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)

Query: 31  LMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSE---YGGKGIPIRHVLGKSK 87
             K+V++ G   + P  GD V    T    DG + ++             P+   +G  K
Sbjct: 3   YTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGK 62

Query: 88  ILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           ++ G  E + TM KGE +  +++P+  YG+   P    +  P + +L FE+E++D 
Sbjct: 63  VIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQP---DAKIPPNAKLTFEVELVDI 115

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 268 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLN---EEKKVFYDTRVDNDGQPLEFSS 324
           +  K  ++ G      + P    ++   Y G L +    +  +    +   + +PL F  
Sbjct: 2   KYTKSVLKKGDKT---NFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKV 58

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRP-ANVPEGAHIQWEIELLGFE 381
           G G V  G++  +  M  GE A +   P++AY K  +P A +P  A + +E+EL+  +
Sbjct: 59  GVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDID 116

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 10/112 (8%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE--------GEPYFFTFGKS 205
              K V+ +G     P+    V  W +    DG +  ++ +         +P  F  G  
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 206 EVPKGLEMGIGTMTREEKAVIYVTSQYLTPS--PLMPVVEGCEEVHFEVELV 255
           +V +G +  + TM++ EKA + +  ++           +    ++ FEVELV
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 3e-12
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            D  ++K   R+G G    + P+    + VHY G LL+  K      R D          
Sbjct: 9   QDEGVLKVIKREGTGT---EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFD----L 61

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382
           G+G V + +++ +  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+ 
Sbjct: 62  GKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG 119

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (138), Expect = 7e-11
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 8/115 (6%)

Query: 29  GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
             ++K + R G G   P  GD+V  H T   LDG    +       +       LGK ++
Sbjct: 11  EGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDG----TKFDSSLDRKDKFSFDLGKGEV 66

Query: 89  LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           +      I TM  GEV     KP+  YG        P   P +  L FE+E+ +F
Sbjct: 67  IKAWDIAIATMKVGEVCHITCKPEYAYGSAGS----PPKIPPNATLVFEVELFEF 117

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 8e-08
 Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 2/106 (1%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGE-PYFFTFGKSEVPKG 210
           D GV+K +  EG G E P     V    +    DG    S  + +  + F  GK EV K 
Sbjct: 10  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 69

Query: 211 LEMGIGTMTREEKAVIYVTSQYL-TPSPLMPVVEGCEEVHFEVELV 255
            ++ I TM   E   I    +Y    +   P +     + FEVEL 
Sbjct: 70  WDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELF 115

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 60.2 bits (145), Expect = 8e-12
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 8/115 (6%)

Query: 29  GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
             ++K V R G G+ TP  GD+V  H   +  +G   +S+         P    +GK ++
Sbjct: 4   RGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRN----EPFVFSIGKGQV 59

Query: 89  LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           +     G+ TM KGE+     KP+  YG       +    P +  L FE+E++DF
Sbjct: 60  IKAWDIGVATMKKGEICHLLCKPEYAYGAT----GSLPKIPSNATLFFEVELLDF 110

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 58.2 bits (140), Expect = 3e-11
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 7/116 (6%)

Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R G GE   + P+    + VHY G L N +K         +  +P  FS G
Sbjct: 3   DRGVLKIVKRVGHGE---ETPMIGDRVYVHYNGKLANGKKFDSSH----DRNEPFVFSIG 55

Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +E+ELL F+
Sbjct: 56  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDFK 111

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYF-FTFGKSEVPK 209
            D GV+K V   G G ETP     V    + K  +GK   S  +    F F+ GK +V K
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIK 61

Query: 210 GLEMGIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELV 255
             ++G+ TM + E   +    +Y   +   +P +     + FEVEL+
Sbjct: 62  AWDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELL 108

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.6 bits (141), Expect = 2e-11
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 25  KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLG 84
           +++ G++    + PG G + P  GD V  H T    +G   +S       +G P +  +G
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDS----SVDRGSPFQCNIG 57

Query: 85  KSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
             +++ G   GIP +  GE +   +     YG        P   P +  L F++E++ 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGF----PGLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (124), Expect = 5e-09
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 7/114 (6%)

Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           +G +   RI  G G      P    L+ +HY G L N +K         + G P + + G
Sbjct: 5   EGNVKIDRISPGDGA---TFPKTGDLVTIHYTGTLENGQKFDSSV----DRGSPFQCNIG 57

Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 379
            G V +G+++ +  +  GE A +T P  YAY     P  +P  + + +++ELL 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (100), Expect = 8e-06
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 2/104 (1%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILS-HREGEPYFFTFGKSEVPKGLE 212
            V    I+ G G   P+    V    +    +G+   S    G P+    G  +V KG +
Sbjct: 7   NVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWD 66

Query: 213 MGIGTMTREEKAVIYVTSQYL-TPSPLMPVVEGCEEVHFEVELV 255
           +GI  ++  EKA + +   Y   P     ++     + F+VEL+
Sbjct: 67  VGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.0 bits (144), Expect = 5e-11
 Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 16/146 (10%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
            A++++  GNRLF   K+  A A Y + +      NP                + N A C
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAV-----------YYTNRALC 47

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
            LK+ +  +++  C + L+ +   VK  +  G   + +  ++EA  + +    + K    
Sbjct: 48  YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

Query: 517 D-ATAALSKLKKQRRKLKVRLENSLK 541
           +      S L+  ++K    +E    
Sbjct: 108 NFGDDIPSALRIAKKKRWNSIEERRI 133

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.2 bits (139), Expect = 1e-10
 Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 2/145 (1%)

Query: 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL- 448
             D I+  +E ++  GN  FK   +E+A  KY KVLR         ++     +    L 
Sbjct: 19  DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALS 78

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
             LN+ AC LK+ + + ++++C + L+ +P++ K LYRR   +  L E+++A  D +   
Sbjct: 79  CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 138

Query: 509 KVDKSSEPDATAALSKLKKQRRKLK 533
           ++         A L K+K++ +  K
Sbjct: 139 EIAPED-KAIQAELLKVKQKIKAQK 162

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 57.9 bits (139), Expect = 3e-10
 Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 12/137 (8%)

Query: 246 EEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEK 305
           +   F  E  +   V  +    +       +G      D       + V Y G L++   
Sbjct: 79  KGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDT------VTVEYTGRLIDGTV 132

Query: 306 KVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV 365
               +      G+P  F      V  G+   ++LM  G    +  P   AY        +
Sbjct: 133 FDSTE----KTGKPATF--QVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPI 186

Query: 366 PEGAHIQWEIELLGFEK 382
                + ++I L+  +K
Sbjct: 187 GPNETLIFKIHLISVKK 203

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 51.0 bits (121), Expect = 6e-08
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 10/121 (8%)

Query: 26  IVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGK 85
           +V  S ++  +   G    P   D V    T R +DG + +ST                 
Sbjct: 94  VVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTE------KTGKPATFQV 147

Query: 86  SKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK 145
           S+++ G  E +  M  G      +   + YG              +E L F+I +I   K
Sbjct: 148 SQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRS----VGGPIGPNETLIFKIHLISVKK 203

Query: 146 A 146
           +
Sbjct: 204 S 204

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 3e-10
 Identities = 27/144 (18%), Positives = 54/144 (37%), Gaps = 27/144 (18%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
           +A K +  GN  +K+  F+ A   Y+K       ++P +                N AA 
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKA----KELDPTNMT-----------YITNQAAV 47

Query: 457 LLKLGECRKSIEACNKVLDANPAHV-------KGLYRRGMAYMALGEFEEAQRDFEMMMK 509
             + G+  K  E C K ++    +        K   R G +Y    ++++A   +   + 
Sbjct: 48  YFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107

Query: 510 VDKSSEPDATAALSKLKKQRRKLK 533
             ++ +      L K ++  + LK
Sbjct: 108 EHRTPD-----VLKKCQQAEKILK 126

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 15/104 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            +R ++ G FE A+    ++ R      P +             + L +++   +     
Sbjct: 6   AHREYQAGDFEAAERHCMQLWR----QEPDNTG-----------VLLLLSSIHFQCRRLD 50

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
           +S       +  NP   +     G  Y   G+ +EA   +   +
Sbjct: 51  RSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL 94

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 6e-08
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 15/91 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            N   ++G  E A   Y K L     V P+               H N+A+ L + G+ +
Sbjct: 312 ANIKREQGNIEEAVRLYRKALE----VFPEFAA-----------AHSNLASVLQQQGKLQ 356

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALG 495
           +++    + +  +P         G     + 
Sbjct: 357 EALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.3 bits (127), Expect = 2e-09
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 4/124 (3%)

Query: 24  MKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPI--RH 81
             + P  L       G G      G  +  H   +  +G + +S+ +        I    
Sbjct: 3   FSVSPSGLAFCDKVVGYGP-EAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGE 61

Query: 82  VLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDC-PVAAPSTFPKDEELHFEIEM 140
           V+      +   +GIP ML G     ++ P++ YG+            P    L F+IE 
Sbjct: 62  VIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEY 121

Query: 141 IDFA 144
           I  A
Sbjct: 122 IGKA 125

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 19/122 (15%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           L       G G   +       L+  HY G L N +          N G+PL F  G G 
Sbjct: 10  LAFCDKVVGYGPEAV----KGQLIKAHYVGKLENGKVFDSSY----NRGKPLTFRIGVGE 61

Query: 329 VPEGFEMCV------RLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQWEIEL 377
           V +G++  +        ML G    +  PP+ AY             +P  + + ++IE 
Sbjct: 62  VIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEY 121

Query: 378 LG 379
           +G
Sbjct: 122 IG 123

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 4e-09
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 31  LMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILL 90
           +    + PG G + P  G     H T    DG            +  P + +LGK +++ 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDG----KKFDSSRDRNKPFKFMLGKQEVIR 57

Query: 91  GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           G  EG+  M  G+ +   + P   YG        P   P    L F++E++  
Sbjct: 58  GWEEGVAQMSVGQRAKLTISPDYAYG----ATGHPGIIPPHATLVFDVELLKL 106

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           +    I  G G      P       VHY GML + +K      R       L    G+  
Sbjct: 2   VQVETISPGDGR---TFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFML----GKQE 54

Query: 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           V  G+E  V  M  G+ A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 55  VIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILS-HREGEPYFFTFGKSEVPKGLE 212
           GV  + I+ G G   P+         +    DGK   S     +P+ F  GK EV +G E
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 213 MGIGTMTREEKAVIYVTSQY-LTPSPLMPVVEGCEEVHFEVELV 255
            G+  M+  ++A + ++  Y    +    ++     + F+VEL+
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 54.1 bits (129), Expect = 6e-09
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 12/122 (9%)

Query: 22  RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRH 81
           + +K     L+  V+  G G+  P D D V  +     +DG   ++       +G P+  
Sbjct: 100 KGVKTSSTGLVYQVVEAGKGE-APKDSDTVVVNYKGTLIDGKEFDN----SYTRGEPLSF 154

Query: 82  VLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMI 141
            L       G  EG+  + KG      + P++ YG+   P       P +  L F++E++
Sbjct: 155 RLDGVIP--GWTEGLKNIKKGGKIKLVIPPELAYGKAGVP-----GIPPNSTLVFDVELL 207

Query: 142 DF 143
           D 
Sbjct: 208 DV 209

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 51.0 bits (121), Expect = 7e-08
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 11/113 (9%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           L+ + +  GKGE P D       + V+YKG L++ ++     TR    G+P   S     
Sbjct: 109 LVYQVVEAGKGEAPKDSDT----VVVNYKGTLIDGKEFDNSYTR----GEP--LSFRLDG 158

Query: 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           V  G+   ++ +  G    +  PP+ AY K   P  +P  + + +++ELL  +
Sbjct: 159 VIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP-GIPPNSTLVFDVELLDVK 210

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 1e-08
 Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 16/140 (11%)

Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHL 451
           DG +  AE+++   N  FK   +E A   Y + +                        + 
Sbjct: 4   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY---------------YG 48

Query: 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
           N +   L+      ++    + ++ +  ++KG YRR  + MALG+F  A RD+E ++KV 
Sbjct: 49  NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 108

Query: 512 KSSEPDATAALSKLKKQRRK 531
                DA     +  K  ++
Sbjct: 109 PHD-KDAKMKYQECNKIVKQ 127

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 51.6 bits (123), Expect = 6e-08
 Identities = 14/129 (10%), Positives = 39/129 (30%), Gaps = 15/129 (11%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                 EG+ + A     + ++     +P+D             L  +    L   G+  
Sbjct: 3   WKNALSEGQLQQALELLIEAIK----ASPKDAS-----------LRSSFIELLCIDGDFE 47

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           ++ E   + +   P ++ G  +      A    ++  +       + ++ E   +     
Sbjct: 48  RADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFN 107

Query: 525 LKKQRRKLK 533
           L    +  +
Sbjct: 108 LSMVSQDYE 116

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 7/129 (5%)

Query: 273 RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEG 332
             +          P  D    VHY G L              +  +    +     V +G
Sbjct: 37  VFQRIARGSGKRAPAIDDKCEVHYTGRLR------DGTVFDSSRERGKPTTFRPNEVIKG 90

Query: 333 FEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDW-TGLSF 391
           +   ++LM  G+   +  P D AY        +P  + +++++EL+  +      T    
Sbjct: 91  WTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGGKGRTAEEV 150

Query: 392 DGIMDEAEK 400
           D I+ +AE+
Sbjct: 151 DEILRKAEE 159

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 18/166 (10%)

Query: 2   AVEDEDINPQKKKAPS---EDDKRRMKIV--PGSLMKAVMRPGGGDSTPSDGDQVAYHCT 56
           A  +E +N  +K+      E    +   V  P  L+   +  G G   P+  D+   H T
Sbjct: 2   ASHEERMNNYRKRVGRLFMEQKAAQPDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYT 61

Query: 57  VRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYG 116
            R  DG + +S+R                ++++ G  E +  M +G+     +   + YG
Sbjct: 62  GRLRDGTVFDSSRERG------KPTTFRPNEVIKGWTEALQLMREGDRWRLFIPYDLAYG 115

Query: 117 EDDCPVAAPSTFPKDEELHFEIEMIDF---AKAKIIADDFGVVKKV 159
                       P    L F++E+I      K +   +   +++K 
Sbjct: 116 VTG----GGGMIPPYSPLEFDVELISIKDGGKGRTAEEVDEILRKA 157

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 16/133 (12%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           ++  +++  GN+    G  + A   Y + +     ++P +              + N +A
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAI----KLDPHNHVL-----------YSNRSA 45

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
              K G+ +K+ E   K +D  P   KG  R+  A   L  FEEA+R +E  +K + ++ 
Sbjct: 46  AYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN- 104

Query: 516 PDATAALSKLKKQ 528
           P     L  ++ +
Sbjct: 105 PQLKEGLQNMEAR 117

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 4e-06
 Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 11/121 (9%)

Query: 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 466
            L+ EG     K  ++  L  F+ V                 +  N+      L    ++
Sbjct: 7   SLWNEGVLAADKKDWKGALDAFSAVQDPHSR-----------ICFNIGCMYTILKNMTEA 55

Query: 467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526
            +A  + ++ +       ++RGM Y    +++ A +D +  +   + ++      L    
Sbjct: 56  EKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF 115

Query: 527 K 527
           K
Sbjct: 116 K 116

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 2/127 (1%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL-LHLNVAACLLKLGEC 463
           G           A+  + + +    H+     + G ++       L +      L     
Sbjct: 43  GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 102

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAAL 522
            + I+     L       + LY     Y    E+++A+    +   +           A+
Sbjct: 103 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAM 162

Query: 523 SKLKKQR 529
             + KQ+
Sbjct: 163 ECVWKQK 169

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 44.4 bits (103), Expect = 5e-06
 Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 18/153 (11%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
            A        R    G+++ A A   + +   + + P++  +     G     H  +A  
Sbjct: 8   GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD---HAGFDAFCHAGLAEA 64

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKG-----------LYRRGMAYMALGEFEEAQRDFE 505
           L  L    +++ + +K L       +            +Y R +A   LG   EA  +F+
Sbjct: 65  LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 124

Query: 506 MMMKVDKSSEPDATAALSKLKKQRRKLKVRLEN 538
            ++++      +        ++       R+  
Sbjct: 125 KVVEMI----EERKGETPGKERMMEVAIDRIAQ 153

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 44.4 bits (104), Expect = 5e-06
 Identities = 16/120 (13%), Positives = 40/120 (33%), Gaps = 11/120 (9%)

Query: 47  DGDQVAYHCTVRTLDGVIVESTRSEY---------GGKGIPIRHVLGKSKILLGLLEGIP 97
            G ++      +   G + +++  E            +  P+  V+G+ +++ G  E + 
Sbjct: 4   KGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVL 63

Query: 98  TMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVK 157
            M  G+    K+  +  YG  +         P+D     + E  +            + +
Sbjct: 64  DMEVGDEKTVKIPAEKAYGNRN--EMLIQKIPRDAFKEADFEPEEGMVILAEGIPATITE 121

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 294 VHYKGMLLN---------EEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE 344
           V Y G L +         E  K       D + +PLEF  GEG + +GFE  V  M  G+
Sbjct: 10  VDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGD 69

Query: 345 IALVTCPPDYAYDK 358
              V  P + AY  
Sbjct: 70  EKTVKIPAEKAYGN 83

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 11/136 (8%), Positives = 30/136 (22%), Gaps = 18/136 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
               K    G    K+                      Q                +++  
Sbjct: 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCS----YICQH-------------CLVHLGD 160

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
                 +  ++           P++ +   +  +   + G+       +   + V     
Sbjct: 161 IARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF- 219

Query: 516 PDATAALSKLKKQRRK 531
           P A+  L K   +  +
Sbjct: 220 PAASTNLQKALSKALE 235

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 5/80 (6%)

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANP-----AHVKGLYRRGMAYMALGEFEEAQRD 503
            +   A   +  G   ++       L+  P     + +      G      GE   +   
Sbjct: 14  FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLAL 73

Query: 504 FEMMMKVDKSSEPDATAALS 523
            +   ++ +  +    A  S
Sbjct: 74  MQQTEQMARQHDVWHYALWS 93

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.4 bits (96), Expect = 7e-05
 Identities = 17/122 (13%), Positives = 30/122 (24%), Gaps = 7/122 (5%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLL------ 449
                 +  G      G+FE A       LR++      D  + +        L      
Sbjct: 9   GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVL 68

Query: 450 -HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
            H   A   +  G     I     +   +P       +   AY       +A   +  + 
Sbjct: 69  AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128

Query: 509 KV 510
             
Sbjct: 129 TT 130

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 20/132 (15%), Positives = 37/132 (28%), Gaps = 9/132 (6%)

Query: 409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE 468
            +    +  +        D N  +        +   +              L    +S +
Sbjct: 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263

Query: 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528
              ++   N   +  +     A   L   +E  + F  +  VD    P   A L  L+  
Sbjct: 264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD----PMRAAYLDDLRS- 318

Query: 529 RRKLKVRLENSL 540
               K  LENS+
Sbjct: 319 ----KFLLENSV 326

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 15/124 (12%), Positives = 38/124 (30%), Gaps = 24/124 (19%)

Query: 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK---LGECRKSIEAC 470
            E+ + +          +  +                 N A  L+K   + + R  ++  
Sbjct: 18  LEILRQQVVSEGGPTATIQSR----------------FNYAWGLIKSTDVNDERLGVKIL 61

Query: 471 NKVLDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529
             +     +  +  LY   +    LGE+  A+R  + + +     E +     +      
Sbjct: 62  TDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----ERNNKQVGALKSMVE 117

Query: 530 RKLK 533
            K++
Sbjct: 118 DKIQ 121

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 12/89 (13%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 427 DFNHVNP--QDDEEGKVFV----GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480
           ++  ++P  Q+D    V       K   ++    A L +     ++ +     ++ N A+
Sbjct: 17  EWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN 76

Query: 481 VKGLYRRGMAYMALGE-FEEAQRDFEMMM 508
               + R +   +L +   E       ++
Sbjct: 77  YTVWHFRRVLLKSLQKDLHEEMNYITAII 105

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 15/105 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G R  +EG    A   +E  ++     +P+  E               +     +  +  
Sbjct: 26  GLRRLQEGDLPNAVLLFEAAVQ----QDPKHME-----------AWQYLGTTQAENEQEL 70

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
            +I A  + L+  P +   L    +++       +A       ++
Sbjct: 71  LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 115

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 12/98 (12%), Positives = 29/98 (29%), Gaps = 16/98 (16%)

Query: 45  PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEV 104
            ++GD      T   +D   + S       +   +   +G +  + G   G+  M   + 
Sbjct: 2   LANGDIAIIDFTG-IVDNKKLAS----ASAQNYEL--TIGSNSFIKGFETGLIAMKVNQK 54

Query: 105 SMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
               +     Y   +            + + FE+ +  
Sbjct: 55  KTLALTFPSDYHVKELQ---------SKPVTFEVVLKA 83

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 454 AACLLKLGECRKSIEACNKVLD----ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
           A  L    +    +    ++L      +    + LY RG+ Y +LG    A+ DF   +
Sbjct: 6   AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	553
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.94
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.93
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.93
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.93
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.92
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.92
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.92
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.9
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.9
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.9
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.89
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.89
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.89
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.88
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.88
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.88
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.87
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.85
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.85
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.84
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.84
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.84
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.82
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.8
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.8
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.8
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.77
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.69
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.52
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.52
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.46
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.45
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.41
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.41
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.4
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.4
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.38
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.31
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.26
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.21
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.17
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.16
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.15
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.13
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.12
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.11
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.09
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.09
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.06
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.04
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	99.01
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.93
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.91
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.89
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.88
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.85
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.78
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.71
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.67
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.66
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.64
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.57
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.56
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.52
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.46
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.4
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.39
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.37
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.31
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.24
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.04
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.01
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.94
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.93
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.73
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.7
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.69
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.63
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.6
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.13
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.09
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.82
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.0
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	91.62
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	84.41
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	82.25

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.94  E-value=1e-25  Score=203.81  Aligned_cols=164  Identities=27%  Similarity=0.397  Sum_probs=152.3

Q ss_pred             CCCCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHH
Q 008788          385 DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR  464 (553)
Q Consensus       385 ~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~  464 (553)
                      +.|.|+.+++++.+..+++.|+.+|+.|+|.+|+..|++||.++........+.......+...+|+|+|.||+++++|.
T Consensus         2 e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~   81 (168)
T d1kt1a1           2 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT   81 (168)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcc
Confidence            56889999999999999999999999999999999999999988776665656666677778899999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008788          465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCL  544 (553)
Q Consensus       465 ~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf  544 (553)
                      +|+.+|+++|.++|+++++||++|.+|..+|+|++|+.+|++|++++|+| ..+...+..|..++.+.++++++.|++||
T Consensus        82 ~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1          82 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN-KAARLQIFMCQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998 57999999999999999999999999999


Q ss_pred             ccccC
Q 008788          545 TRSLG  549 (553)
Q Consensus       545 ~~~~~  549 (553)
                      .+...
T Consensus       161 ~~~~~  165 (168)
T d1kt1a1         161 KKFAE  165 (168)
T ss_dssp             HHHHT
T ss_pred             hhhhh
Confidence            87653

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=4.9e-26  Score=191.75  Aligned_cols=111  Identities=28%  Similarity=0.550  Sum_probs=105.4

Q ss_pred             cCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEE
Q 008788           26 IVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVS  105 (553)
Q Consensus        26 ~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~  105 (553)
                      ..++||+|+|+++|+|...|..||.|.+||++++.||++|+||++    ++.|+.|.+|.+++++||+++|.+|++|+++
T Consensus         7 ~~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~----~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~   82 (118)
T d1r9ha_           7 KKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRD----RGDQFSFNLGRGNVIKGWDLGVATMTKGEVA   82 (118)
T ss_dssp             TCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTTTSSCHHHHHHHTTCCBTCEE
T ss_pred             cCCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccc----cceeeeeeccCcceeeeeeeeeeeecCCceE
Confidence            467999999999999987799999999999999999999999998    7889999999999999999999999999999


Q ss_pred             EEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 008788          106 MFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (553)
Q Consensus       106 ~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~  144 (553)
                      .|.|||++|||..+++    +.|||+++|+|+|+|++|.
T Consensus        83 ~~~ipp~laYG~~g~~----~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          83 EFTIRSDYGYGDAGSP----PKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             EEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred             EEEECHHHhCCcCCCC----CccCcCCcEEEEEEEEEEe
Confidence            9999999999999875    6799999999999999985

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.7e-25  Score=188.82  Aligned_cols=112  Identities=30%  Similarity=0.474  Sum_probs=105.6

Q ss_pred             cCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEE
Q 008788           26 IVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVS  105 (553)
Q Consensus        26 ~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~  105 (553)
                      ..++||+|+|+++|.|...|..||.|.+||++++.||++|+||++    ++.|+.|.+|.+++++||+.+|.+|++|+++
T Consensus         8 ~~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~----~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~   83 (120)
T d1q1ca1           8 KQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLD----RKDKFSFDLGKGEVIKAWDIAIATMKVGEVC   83 (120)
T ss_dssp             SCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTT----SSSCEEEETTTTSSCHHHHHHHTTCCTTCEE
T ss_pred             CCCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEeccc----cccceeeecCCCceeeeeeeeeccccCCcEE
Confidence            356999999999999987799999999999999999999999998    7889999999999999999999999999999


Q ss_pred             EEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeec
Q 008788          106 MFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK  145 (553)
Q Consensus       106 ~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~  145 (553)
                      .|.|||++|||..+.+    +.|||+++|+|+|+|++|..
T Consensus        84 ~~~ip~~laYG~~g~~----~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          84 HITCKPEYAYGSAGSP----PKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             EEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEECHHHhCCCcCCC----CCCCcCCcEEEEEEEEEEeC
Confidence            9999999999999875    68999999999999999853

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.8e-25  Score=199.67  Aligned_cols=161  Identities=27%  Similarity=0.422  Sum_probs=150.5

Q ss_pred             CCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 008788          387 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  466 (553)
Q Consensus       387 ~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A  466 (553)
                      |+|+.+++++.+..+++.|+.+|+.|+|.+|+..|++||+++.......+.+......+...+|+|+|.||+++++|.+|
T Consensus         2 ~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A   81 (170)
T d1p5qa1           2 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAA   81 (170)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccc
Confidence            67999999999999999999999999999999999999998776655556666777788889999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008788          467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTR  546 (553)
Q Consensus       467 ~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~  546 (553)
                      +.+|++||+++|+++++|+++|.||..+|+|++|+.+|++|++++|+| ..+...+..+.+++.+..+++++.|++||+.
T Consensus        82 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  160 (170)
T d1p5qa1          82 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLAREKKLYANMFER  160 (170)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999997 5799999999999999999999999999987


Q ss_pred             cc
Q 008788          547 SL  548 (553)
Q Consensus       547 ~~  548 (553)
                      ..
T Consensus       161 ~~  162 (170)
T d1p5qa1         161 LA  162 (170)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.8e-25  Score=182.62  Aligned_cols=107  Identities=26%  Similarity=0.553  Sum_probs=101.6

Q ss_pred             ceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEE
Q 008788           30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM  109 (553)
Q Consensus        30 g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~i  109 (553)
                      ||+|+++++|+|+..|..||.|.+||++++.||++|++|++    ++.|+.|.+|.+++++||+++|.+|++|+++.|.|
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~----~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~i   76 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTI   76 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeec----cceeeeEeeCcchhheeehhhhcCccCCCEEEEEE
Confidence            79999999999997789999999999999999999999997    78899999999999999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 008788          110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (553)
Q Consensus       110 p~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~  144 (553)
                      ||++|||..+.+    +.||||++|+|+|+|+++.
T Consensus        77 p~~laYG~~g~~----~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          77 SPDYAYGATGHP----GIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             CGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEC
T ss_pred             CHHHhCCCCCCC----CCCCcCCeEEEEEEEEEEC
Confidence            999999999875    6699999999999999873

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.5e-25  Score=184.30  Aligned_cols=111  Identities=25%  Similarity=0.518  Sum_probs=105.2

Q ss_pred             ccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcE
Q 008788           25 KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEV  104 (553)
Q Consensus        25 ~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~  104 (553)
                      ...++||+++++++|+|...|+.||.|.+||++++.||++|+++++    ...|+.|.+|.+++++||+++|.+|++|++
T Consensus         2 ~~~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~~----~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~   77 (113)
T d1yata_           2 EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVD----RGSPFQCNIGVGQVIKGWDVGIPKLSVGEK   77 (113)
T ss_dssp             EECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTT----TTCCEEEETTSSSSCHHHHHHGGGCCTTCE
T ss_pred             cCccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEecccc----CCceEeeeeccCceeeehhhhcccccCCCE
Confidence            4568999999999999987799999999999999999999999997    778999999999999999999999999999


Q ss_pred             EEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788          105 SMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       105 ~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~  143 (553)
                      +.+.|||++|||..|.+    +.||++++|+|+|+|+++
T Consensus        78 ~~~~iP~~laYG~~g~~----~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          78 ARLTIPGPYAYGPRGFP----GLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             EEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEE
T ss_pred             EEEEechHHeecCcCCC----CccCcCCeEEEEEEEEEe
Confidence            99999999999999975    679999999999999987

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.92  E-value=1.1e-25  Score=187.77  Aligned_cols=110  Identities=30%  Similarity=0.535  Sum_probs=85.3

Q ss_pred             CCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEE
Q 008788           27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM  106 (553)
Q Consensus        27 ~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~  106 (553)
                      .++|++|+++++|.|...|..||.|.+||++++.||++|+||++    ++.|+.|.+|.+++++||+.+|.+|++|+++.
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~~----~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~   77 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHD----RNEPFVFSIGKGQVIKAWDIGVATMKKGEICH   77 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC----------------CEEEETTSSSSCHHHHHSTTTCCTTCCEE
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEEe----cceeeeeecCCCcEEeeeeeeehhccCCcEEE
Confidence            47999999999999987799999999999999999999999997    78999999999999999999999999999999


Q ss_pred             EEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 008788          107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (553)
Q Consensus       107 ~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~  144 (553)
                      ++|||++|||..+.+    +.|||+++|+|+|+|++|.
T Consensus        78 ~~ip~~layG~~g~~----~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          78 LLCKPEYAYGATGSL----PKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             EEC----CCCTTTCT----TTSCTTCCCEEEEEEEEEE
T ss_pred             EEECHHHhCCCCCCC----CcCCcCCeEEEEEEEEEEC
Confidence            999999999999875    6899999999999999973

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.9e-24  Score=178.04  Aligned_cols=111  Identities=27%  Similarity=0.500  Sum_probs=100.6

Q ss_pred             ceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccC---CCCCcceEEEcCCCccchhHHhhcCCCCCCcEEE
Q 008788           30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEY---GGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM  106 (553)
Q Consensus        30 g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~---~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~  106 (553)
                      ++.++|+++|+|...|+.||.|+|||++++.||++||||++..   .....|+.|.+|.+++++||+++|.+|++||++.
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            4789999999998779999999999999999999999997532   2245799999999999999999999999999999


Q ss_pred             EEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788          107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       107 ~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~  143 (553)
                      |.|||++|||..+.+.   ..||++++|+|+|+|+++
T Consensus        82 ~~ip~~~ayG~~g~~~---~~Ipp~s~L~feieLl~v  115 (116)
T d1pbka_          82 LEIEPEWAYGKKGQPD---AKIPPNAKLTFEVELVDI  115 (116)
T ss_dssp             EEECGGGTTTTTCBGG---GTBCTTCCEEEEEEEEEE
T ss_pred             EEECHHHhCCccCCCC---CCcCcCCeEEEEEEEEEE
Confidence            9999999999988752   469999999999999987

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.90  E-value=5.7e-24  Score=197.14  Aligned_cols=113  Identities=26%  Similarity=0.439  Sum_probs=105.4

Q ss_pred             hccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCC
Q 008788           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (553)
Q Consensus        22 ~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~  101 (553)
                      .....+++||+|+|+++|+|.. |..||.|.|||++++.||++|++|+.    ++.|++|.+  +++|+||+++|.+|++
T Consensus        91 ~~v~~~~sGl~y~v~~~G~G~~-p~~~d~v~v~y~g~l~dg~~f~~s~~----~~~p~~~~~--~~~i~G~~e~l~~m~~  163 (204)
T d1fd9a_          91 PGVVVLPSGLQYKVINSGNGVK-PGKSDTVTVEYTGRLIDGTVFDSTEK----TGKPATFQV--SQVIPGWTEALQLMPA  163 (204)
T ss_dssp             TTEEECTTSCEEEEEECCCSCC-CCTTCEEEEEEEEEETTSCEEEEHHH----HCSCEEEEG--GGSCHHHHHHHTTCCT
T ss_pred             CceEEecCccEEEEeecCCCcc-cCCCCEEEEEEEEEECCCCEeccccc----CCCCceecC--CccchhHHHHhcCCCC
Confidence            4567789999999999999987 99999999999999999999999998    788999987  5799999999999999


Q ss_pred             CcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeec
Q 008788          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK  145 (553)
Q Consensus       102 G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~  145 (553)
                      |+++.|+|||++|||..|.+    +.||||++|+|+|+|++|..
T Consensus       164 G~~~~~~iP~~laYG~~g~~----~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         164 GSTWEIYVPSGLAYGPRSVG----GPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             TCEEEEEECGGGTTTTCCCS----SSCCTTCCEEEEEEEEEEEC
T ss_pred             CCEEEEEEChHHCcCCCCCC----CCcCcCCcEEEEEEEEEEEc
Confidence            99999999999999999986    67999999999999999864

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.90  E-value=1.3e-23  Score=176.74  Aligned_cols=108  Identities=32%  Similarity=0.463  Sum_probs=101.6

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (553)
Q Consensus       151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~  229 (553)
                      .|.|+.+.++++|.|+..|+.||.|++||++++.||++|+||. .++|++|.+|.+++++||+++|.+|++||+++++||
T Consensus         8 ~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~~ip   87 (118)
T d1r9ha_           8 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR   87 (118)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccccceeeeeeccCcceeeeeeeeeeeecCCceEEEEEC
Confidence            5789999999999998889999999999999999999999985 578999999999999999999999999999999999


Q ss_pred             CCccCCCCC-CCCCCCCceEEEEEEEeeee
Q 008788          230 SQYLTPSPL-MPVVEGCEEVHFEVELVHLI  258 (553)
Q Consensus       230 ~~~~~g~~~-~~~i~~~~~l~~~v~l~~~~  258 (553)
                      |++|||+.+ ++.||++++|+|+|+|++|.
T Consensus        88 p~laYG~~g~~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          88 SDYGYGDAGSPPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             HHHhCCcCCCCCccCcCCcEEEEEEEEEEe
Confidence            999999864 45799999999999999985

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.1e-23  Score=195.89  Aligned_cols=112  Identities=25%  Similarity=0.533  Sum_probs=104.3

Q ss_pred             hhccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCC
Q 008788           21 KRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML  100 (553)
Q Consensus        21 ~~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~  100 (553)
                      ......+++||+|+|+++|+|.. |..||.|.|||++++.||++|++|++    ++.|+.|.+  +++|+||+++|.+|+
T Consensus        99 ~~~v~~~~sGl~y~v~~~G~G~~-p~~gd~v~v~y~g~l~dG~~fd~s~~----~~~p~~~~~--~~vi~g~~e~l~~m~  171 (210)
T d1q6ha_          99 EKGVKTSSTGLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRL--DGVIPGWTEGLKNIK  171 (210)
T ss_dssp             STTEEECTTSCEEEEEECCSSCC-CCTTCEEEEEEEEEETTSCEEEEGGG----GTSCEEEEG--GGSCHHHHHHGGGSC
T ss_pred             cCceEEccCceEEEEeeCCCCCC-CCCCceEEEEEEEEEcCCCEEeeccc----CCCcceecc--CccchhHHHHHhhcc
Confidence            34567889999999999999987 99999999999999999999999998    789999999  479999999999999


Q ss_pred             CCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 008788          101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (553)
Q Consensus       101 ~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~  144 (553)
                      +|+++.|+|||++|||..|.+     .||||++|+|+|+|++|.
T Consensus       172 ~G~k~~~~iP~~laYG~~g~~-----~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         172 KGGKIKLVIPPELAYGKAGVP-----GIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             TTCEEEEEECGGGTTTTTCBT-----TBCTTCCEEEEEEEEEEC
T ss_pred             CCCEEEEEECHHHCcCCCCCC-----CCCcCCcEEEEEEEEEEC
Confidence            999999999999999999974     599999999999999873

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.6e-23  Score=173.77  Aligned_cols=109  Identities=29%  Similarity=0.325  Sum_probs=102.2

Q ss_pred             cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEE
Q 008788          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (553)
Q Consensus       150 ~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v  228 (553)
                      ..|.++.+.++++|.|...|..||.|+|||++++.||++|+|+. .++|+.|.+|.+++++||+++|.+|++||+++|+|
T Consensus         8 ~~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~~i   87 (120)
T d1q1ca1           8 KQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITC   87 (120)
T ss_dssp             SCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             CCCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEeccccccceeeecCCCceeeeeeeeeccccCCcEEEEEE
Confidence            35789999999999998889999999999999999999999986 47899999999999999999999999999999999


Q ss_pred             eCCccCCCCC-CCCCCCCceEEEEEEEeeee
Q 008788          229 TSQYLTPSPL-MPVVEGCEEVHFEVELVHLI  258 (553)
Q Consensus       229 ~~~~~~g~~~-~~~i~~~~~l~~~v~l~~~~  258 (553)
                      ||+++||+.. ++.||||++|+|+|+|++|+
T Consensus        88 p~~laYG~~g~~~~IPp~s~LifeIeLl~v~  118 (120)
T d1q1ca1          88 KPEYAYGSAGSPPKIPPNATLVFEVELFEFK  118 (120)
T ss_dssp             CGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CHHHhCCCcCCCCCCCcCCcEEEEEEEEEEe
Confidence            9999999864 56799999999999999986

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.89  E-value=1.1e-22  Score=180.70  Aligned_cols=149  Identities=25%  Similarity=0.309  Sum_probs=131.8

Q ss_pred             CCCCCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCCh-hHHHHHhhhhhHHHHHHHHHHHHcCC
Q 008788          384 KDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD-EEGKVFVGKRNLLHLNVAACLLKLGE  462 (553)
Q Consensus       384 ~~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~-ee~~~~~~~~~~~~~nla~~~~kl~~  462 (553)
                      .+.|+|+.+++++.+..+++.|+.+|+.|+|.+|+..|++|++++.......+ ........+...+++|+|.||+++++
T Consensus         3 ~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~   82 (153)
T d2fbna1           3 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD   82 (153)
T ss_dssp             CSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc
Confidence            45678999999999999999999999999999999999999997765544333 23344555667899999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 008788          463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLK  533 (553)
Q Consensus       463 ~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~  533 (553)
                      |.+|+.+|++||+++|.+++|||++|.+|..+|+|++|+.+|++|++++|+| .++...+..+.+++++.+
T Consensus        83 ~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~kl~~~~  152 (153)
T d2fbna1          83 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN-LDIRNSYELCVNKLKEAR  152 (153)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999998 568888988888876643

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.89  E-value=3.2e-23  Score=183.84  Aligned_cols=116  Identities=22%  Similarity=0.405  Sum_probs=104.1

Q ss_pred             hccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCC
Q 008788           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (553)
Q Consensus        22 ~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~  101 (553)
                      .....+|+||+|+|+++|.|...|..||.|.|||++++.||++|+++++    ...|+  .++.+.+++||+.+|.+|++
T Consensus        27 ~~~~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~----~~~p~--~~~~~~~i~G~~e~l~~M~~  100 (160)
T d1jvwa_          27 PDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE----RGKPT--TFRPNEVIKGWTEALQLMRE  100 (160)
T ss_dssp             TTEEECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHH----HTSCE--EECGGGSCHHHHHHHTTCCT
T ss_pred             CCCEECCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeecc----ccCcc--ccCccccchhHHHHhcCccc
Confidence            3456789999999999999987799999999999999999999999987    56664  45668999999999999999


Q ss_pred             CcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeeccc
Q 008788          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK  147 (553)
Q Consensus       102 G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~~  147 (553)
                      |+++.|+|||++|||..|.+    +.||+|++|+|+|+|++|.+..
T Consensus       101 Ge~~~v~iPp~laYG~~g~~----~~IPp~s~LifeIeLl~i~~~~  142 (160)
T d1jvwa_         101 GDRWRLFIPYDLAYGVTGGG----GMIPPYSPLEFDVELISIKDGG  142 (160)
T ss_dssp             TCEEEEEECGGGTTTTTCSS----SSSCTTCCEEEEEEEEEEGGGC
T ss_pred             cceeEEEeCHHHCcCCCCCC----CCcCcCCcEEEEEEEEEEecCC
Confidence            99999999999999998865    6799999999999999997543

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8.6e-23  Score=168.91  Aligned_cols=105  Identities=27%  Similarity=0.422  Sum_probs=97.7

Q ss_pred             CeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCc
Q 008788          154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY  232 (553)
Q Consensus       154 g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~  232 (553)
                      |+.++++++|.|...|+.||.|++||++++.||++|+++. .++|++|.+|.+++++||+++|.+|++||+++++|||++
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~l   80 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeeccceeeeEeeCcchhheeehhhhcCccCCCEEEEEECHHH
Confidence            6789999999997779999999999999999999999885 578999999999999999999999999999999999999


Q ss_pred             cCCCCC-CCCCCCCceEEEEEEEeeee
Q 008788          233 LTPSPL-MPVVEGCEEVHFEVELVHLI  258 (553)
Q Consensus       233 ~~g~~~-~~~i~~~~~l~~~v~l~~~~  258 (553)
                      +||+.+ ++.||||++|+|+|+|++++
T Consensus        81 aYG~~g~~~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          81 AYGATGHPGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             hCCCCCCCCCCCcCCeEEEEEEEEEEC
Confidence            999864 46699999999999999873

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=2.3e-23  Score=177.83  Aligned_cols=115  Identities=23%  Similarity=0.428  Sum_probs=102.9

Q ss_pred             cccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcC------
Q 008788           24 MKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIP------   97 (553)
Q Consensus        24 ~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~------   97 (553)
                      ..++|+||+|+++++|+|+. |+.||.|.|||++++.||++|+||+.    .+.|+.|.+|.+.+++||+.+|.      
T Consensus         3 ~~~~psGl~y~~~~~G~G~~-p~~gd~V~v~y~g~l~~G~~fdss~~----~~~p~~~~~g~~~~i~g~~~~i~g~~~l~   77 (125)
T d1u79a_           3 FSVSPSGLAFCDKVVGYGPE-AVKGQLIKAHYVGKLENGKVFDSSYN----RGKPLTFRIGVGEVIKGWDQGILGSDGIP   77 (125)
T ss_dssp             CEECTTSCEEEEEECCSSCB-CCTTCEEEEEEEEECTTSCEEEEHHH----HTSCEEEETTSSSSCHHHHHHHHCBTTBC
T ss_pred             cEECCCCCEEEEEEeccCCC-CCCCCEEEEEEEeeecCCcEEecccc----cCcceeEecCccccccchhhhccchhhcc
Confidence            35689999999999999987 99999999999999999999999997    77899999999999999988764      


Q ss_pred             CCCCCcEEEEEEcCCCccCCCCCCCC-CCCCCCCCCeEEEEEEEEee
Q 008788           98 TMLKGEVSMFKMKPQMHYGEDDCPVA-APSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus        98 ~m~~G~~~~~~ip~~~a~g~~~~~~~-~~~~i~~~~~l~~~v~l~~~  143 (553)
                      .|++|++++|+|||++|||.+|.+.. .+..||++++|+|+|||+.+
T Consensus        78 ~M~~G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          78 PMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             CCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             cccCCCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            59999999999999999999875321 12459999999999999986

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.88  E-value=2.7e-23  Score=173.10  Aligned_cols=108  Identities=31%  Similarity=0.477  Sum_probs=83.7

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (553)
Q Consensus       151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~  229 (553)
                      .|.|+.++++++|.|...|+.||.|+|||++++.||++|+||. .+.|+.|.+|.+++++||+++|.+|++||+++++||
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~~~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~~ip   81 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCK   81 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEEEC-
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEEecceeeeeecCCCcEEeeeeeeehhccCCcEEEEEEC
Confidence            4789999999999998889999999999999999999999885 478999999999999999999999999999999999


Q ss_pred             CCccCCCC-CCCCCCCCceEEEEEEEeeee
Q 008788          230 SQYLTPSP-LMPVVEGCEEVHFEVELVHLI  258 (553)
Q Consensus       230 ~~~~~g~~-~~~~i~~~~~l~~~v~l~~~~  258 (553)
                      |++|||+. ..+.||||++|+|+|+|++++
T Consensus        82 ~~layG~~g~~~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          82 PEYAYGATGSLPKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             ---CCCTTTCTTTSCTTCCCEEEEEEEEEE
T ss_pred             HHHhCCCCCCCCcCCcCCeEEEEEEEEEEC
Confidence            99999986 456899999999999999984

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.9e-22  Score=168.34  Aligned_cols=104  Identities=23%  Similarity=0.379  Sum_probs=96.2

Q ss_pred             CeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC--------CCCceEEEcCCCCccchHHHhhccCCcCcEEE
Q 008788          154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR--------EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAV  225 (553)
Q Consensus       154 g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~--------~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~  225 (553)
                      .+.+.++++|.|...|+.||.|+|||++++.||++|||+.        .++|+.|.+|.+++++||+++|.+|++||+++
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            4789999999997789999999999999999999999873        35699999999999999999999999999999


Q ss_pred             EEEeCCccCCCCCC--CCCCCCceEEEEEEEeee
Q 008788          226 IYVTSQYLTPSPLM--PVVEGCEEVHFEVELVHL  257 (553)
Q Consensus       226 ~~v~~~~~~g~~~~--~~i~~~~~l~~~v~l~~~  257 (553)
                      ++|||+++||+.+.  ..||++++|+|+|+|+++
T Consensus        82 ~~ip~~~ayG~~g~~~~~Ipp~s~L~feieLl~v  115 (116)
T d1pbka_          82 LEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI  115 (116)
T ss_dssp             EEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             EEECHHHhCCccCCCCCCcCcCCeEEEEEEEEEE
Confidence            99999999998654  569999999999999987

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=4.2e-22  Score=166.53  Aligned_cols=107  Identities=22%  Similarity=0.301  Sum_probs=99.7

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (553)
Q Consensus       151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~  229 (553)
                      .|.++.+.++++|.|...|+.||.|+|||++++.||++|+++. .+.|+.|.++.+++++||++||.+|++||+++++||
T Consensus         4 ~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~~~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~~iP   83 (113)
T d1yata_           4 IEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIP   83 (113)
T ss_dssp             CGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEEC
T ss_pred             ccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEeccccCCceEeeeeccCceeeehhhhcccccCCCEEEEEec
Confidence            3678999999999997779999999999999999999999986 468999999999999999999999999999999999


Q ss_pred             CCccCCCCC-CCCCCCCceEEEEEEEeee
Q 008788          230 SQYLTPSPL-MPVVEGCEEVHFEVELVHL  257 (553)
Q Consensus       230 ~~~~~g~~~-~~~i~~~~~l~~~v~l~~~  257 (553)
                      |++|||+.+ ++.||++++|+|+|+|+++
T Consensus        84 ~~laYG~~g~~~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          84 GPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             hHHeecCcCCCCccCcCCeEEEEEEEEEe
Confidence            999999965 4569999999999999987

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.85  E-value=4.6e-21  Score=161.05  Aligned_cols=109  Identities=23%  Similarity=0.471  Sum_probs=95.4

Q ss_pred             cccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCC---ccchhHHhhcCCCC
Q 008788           24 MKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKS---KILLGLLEGIPTML  100 (553)
Q Consensus        24 ~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~---~~~~g~~~~l~~m~  100 (553)
                      ..+.++||.|+|+++|+|..+|..||.|++||++++ +|++|+++         +..|.++.+   .+++||+.+|.+|+
T Consensus         3 ~~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~---------~~~~~~~~~~~~~vi~G~~~~l~~M~   72 (115)
T d1kt1a3           3 DLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR---------DVAFTVGEGEDHDIPIGIDKALEKMQ   72 (115)
T ss_dssp             ETTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE---------EEEEETTCGGGGTCCHHHHHHHTTCC
T ss_pred             ccccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc---------ccCceeeeccccccCchhHhhhccch
Confidence            356899999999999999766999999999999996 88888754         355666543   58999999999999


Q ss_pred             CCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeec
Q 008788          101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK  145 (553)
Q Consensus       101 ~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~  145 (553)
                      +|+++.|+|||++|||..+.+.   .+|||+++|+|+|+|+++.+
T Consensus        73 ~Ge~~~v~ip~~~ayG~~g~~~---~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          73 REEQCILHLGPRYGFGEAGKPK---FGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             TTCEEEEEECGGGSSCTTCBTT---TTBCTTCCEEEEEEEEEEEC
T ss_pred             hhceeEEEeCHHHCcCCCCCCC---CCcCcCCeEEEEEEEEEEEe
Confidence            9999999999999999998762   47999999999999999975

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=3.4e-21  Score=178.92  Aligned_cols=106  Identities=23%  Similarity=0.350  Sum_probs=99.8

Q ss_pred             cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEE
Q 008788          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (553)
Q Consensus       150 ~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v  228 (553)
                      ..++|+.+.++++|.| ..|..||.|+|||++++.||++|++|. +++|+.|.+|  ++|+||++||.+|++|++++++|
T Consensus       104 ~~~sGl~y~v~~~G~G-~~p~~gd~v~v~y~g~l~dG~~fd~s~~~~~p~~~~~~--~vi~g~~e~l~~m~~G~k~~~~i  180 (210)
T d1q6ha_         104 TSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVI  180 (210)
T ss_dssp             ECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEEE
T ss_pred             EccCceEEEEeeCCCC-CCCCCCceEEEEEEEEEcCCCEEeecccCCCcceeccC--ccchhHHHHHhhccCCCEEEEEE
Confidence            3668999999999999 899999999999999999999999985 5899999996  79999999999999999999999


Q ss_pred             eCCccCCCCCCCCCCCCceEEEEEEEeeee
Q 008788          229 TSQYLTPSPLMPVVEGCEEVHFEVELVHLI  258 (553)
Q Consensus       229 ~~~~~~g~~~~~~i~~~~~l~~~v~l~~~~  258 (553)
                      ||+++||+.+.+.||||++|+|+|+|++++
T Consensus       181 P~~laYG~~g~~~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         181 PPELAYGKAGVPGIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             CGGGTTTTTCBTTBCTTCCEEEEEEEEEEC
T ss_pred             CHHHCcCCCCCCCCCcCCcEEEEEEEEEEC
Confidence            999999998778899999999999999873

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.84  E-value=9.6e-21  Score=159.06  Aligned_cols=109  Identities=28%  Similarity=0.526  Sum_probs=95.2

Q ss_pred             eeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCC---CchhHHHHHH
Q 008788          261 RDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG---LVPEGFEMCV  337 (553)
Q Consensus       261 ~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~---~v~~g~e~~l  337 (553)
                      +|+++||+|+|+++++|+|..   .|..|+.|+|||.+++ +  |++|+.       ++..|.++.+   .+|+||+.+|
T Consensus         2 e~~~~D~gi~k~il~~G~G~~---~p~~gd~V~v~y~g~~-~--g~~~~~-------~~~~~~~~~~~~~~vi~G~~~~l   68 (115)
T d1kt1a3           2 EDLLEDGGIIRRTKRRGEGYS---NPNEGARVQIHLEGRC-G--GRVFDC-------RDVAFTVGEGEDHDIPIGIDKAL   68 (115)
T ss_dssp             EETTSSSSEEEEEEECCCCSS---CCCTTCEEEEEEEEEE-T--TEEEEE-------EEEEEETTCGGGGTCCHHHHHHH
T ss_pred             CccccCCCEEEEEEEeecCCC---CCCCCCEEEEEEEEEe-C--Cccccc-------cccCceeeeccccccCchhHhhh
Confidence            589999999999999999962   3589999999999996 3  677743       2466777653   5899999999


Q ss_pred             hcCCCCcEEEEEeCCCCcccCCCCCC-CCCCCCeEEEEEEEeeeec
Q 008788          338 RLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK  382 (553)
Q Consensus       338 ~~M~~GE~~~~~~~~~~~yg~~g~~~-~ip~~~~l~~~ieL~~~~~  382 (553)
                      .+|++||++.|++||++|||+.+.++ .|||+++|+|+|+|+++++
T Consensus        69 ~~M~~Ge~~~v~ip~~~ayG~~g~~~~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          69 EKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             TTCCTTCEEEEEECGGGSSCTTCBTTTTBCTTCCEEEEEEEEEEEC
T ss_pred             ccchhhceeEEEeCHHHCcCCCCCCCCCcCcCCeEEEEEEEEEEEe
Confidence            99999999999999999999999876 6999999999999999976

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.84  E-value=6.6e-21  Score=176.28  Aligned_cols=107  Identities=23%  Similarity=0.266  Sum_probs=98.8

Q ss_pred             cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEE
Q 008788          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (553)
Q Consensus       150 ~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v  228 (553)
                      ..++|+.+.++++|.| ..|..||.|+|||++++.||++|+++. ++.|++|.+|  ++|+||+++|.+|++|++++|+|
T Consensus        95 ~~~sGl~y~v~~~G~G-~~p~~~d~v~v~y~g~l~dg~~f~~s~~~~~p~~~~~~--~~i~G~~e~l~~m~~G~~~~~~i  171 (204)
T d1fd9a_          95 VLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIYV  171 (204)
T ss_dssp             ECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             EecCccEEEEeecCCC-cccCCCCEEEEEEEEEECCCCEecccccCCCCceecCC--ccchhHHHHhcCCCCCCEEEEEE
Confidence            3678999999999999 889999999999999999999999984 6789998876  79999999999999999999999


Q ss_pred             eCCccCCCCC-CCCCCCCceEEEEEEEeeeee
Q 008788          229 TSQYLTPSPL-MPVVEGCEEVHFEVELVHLIQ  259 (553)
Q Consensus       229 ~~~~~~g~~~-~~~i~~~~~l~~~v~l~~~~~  259 (553)
                      ||++|||+.+ ++.||||++|+|+|+|+++.+
T Consensus       172 P~~laYG~~g~~~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         172 PSGLAYGPRSVGGPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             CGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             ChHHCcCCCCCCCCcCcCCcEEEEEEEEEEEc
Confidence            9999999865 567999999999999999864

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=2.2e-20  Score=168.32  Aligned_cols=151  Identities=26%  Similarity=0.457  Sum_probs=131.4

Q ss_pred             CChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCC-CChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 008788          389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP-QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  467 (553)
Q Consensus       389 ~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~-~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~  467 (553)
                      .+.+..+..+..++..|+.+|+.|+|.+|+..|++||.++..... ....+...+......+++|+|.||+++++|++|+
T Consensus        18 ~~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai   97 (169)
T d1ihga1          18 KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAV   97 (169)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhh
Confidence            356778888999999999999999999999999999987653221 2223334455667889999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008788          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSL  540 (553)
Q Consensus       468 ~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~  540 (553)
                      .+|++||+++|+++++|+++|.||..+|+|++|+.+|++|++++|+| ..+...|..|.+++++.++++|+.|
T Consensus        98 ~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n-~~~~~~l~~~~~~l~~~~~~~k~~y  169 (169)
T d1ihga1          98 DSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAIQAELLKVKQKIKAQKDKEKAAY  169 (169)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999997 5689999999999998888887654

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.9e-20  Score=157.60  Aligned_cols=109  Identities=26%  Similarity=0.430  Sum_probs=92.4

Q ss_pred             cCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCC---CccchhHHhhcCCCCCC
Q 008788           26 IVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGK---SKILLGLLEGIPTMLKG  102 (553)
Q Consensus        26 ~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~---~~~~~g~~~~l~~m~~G  102 (553)
                      ..++||.|+|+++|.|..+|..||.|++||++++.||+ |+++.         ..+..+.   ..+++||+.+|.+|++|
T Consensus         5 ~~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~-~~~~~---------~~~~~~~~~~~~~i~Gl~~~l~~M~~G   74 (117)
T d1q1ca2           5 EEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQRE---------LRFEIGEGENLDLPYGLERAIQRMEKG   74 (117)
T ss_dssp             TCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEE-EEEEE---------EEEETTCGGGGTCCHHHHHHHTTCCTT
T ss_pred             cCCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCc-Eeecc---------ccceeeecceeeeCcHHHHhhhcchhh
Confidence            45799999999999998779999999999999987765 55332         3444443   36899999999999999


Q ss_pred             cEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeeccc
Q 008788          103 EVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK  147 (553)
Q Consensus       103 ~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~~  147 (553)
                      ++++++|||++|||..|.+.   ..|||+++|+|+|+|+++.+..
T Consensus        75 e~~~i~ip~~~ayG~~g~~~---~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          75 EHSIVYLKPSYAFGSVGKEK---FQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             CEEEEEECGGGTTTTTCBGG---GTBCTTCCEEEEEEEEEEECCC
T ss_pred             CeEEEEECHHHhCcccCCCC---CccCcCCeEEEEEEEEEEEeCC
Confidence            99999999999999988751   4799999999999999997643

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.7e-19  Score=151.74  Aligned_cols=107  Identities=21%  Similarity=0.377  Sum_probs=92.7

Q ss_pred             CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCC---CCccchHHHhhccCCcCcEEEEE
Q 008788          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGK---SEVPKGLEMGIGTMTREEKAVIY  227 (553)
Q Consensus       151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~---~~~~~g~~~~l~~mk~Ge~~~~~  227 (553)
                      .|.|+.++++++|.|++.|..||.|+|||++++.+|+...+     +..+..+.   .++++||+++|.+|++||+++++
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~~~~~-----~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~~i~   80 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVY   80 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCcEeec-----cccceeeecceeeeCcHHHHhhhcchhhCeEEEE
Confidence            57899999999999988999999999999999887764433     45566554   36899999999999999999999


Q ss_pred             EeCCccCCCCCC--CCCCCCceEEEEEEEeeeeeeee
Q 008788          228 VTSQYLTPSPLM--PVVEGCEEVHFEVELVHLIQVRD  262 (553)
Q Consensus       228 v~~~~~~g~~~~--~~i~~~~~l~~~v~l~~~~~~~d  262 (553)
                      |||++|||..+.  ..|||+++|+|+|+|++|.+.+|
T Consensus        81 ip~~~ayG~~g~~~~~Ipp~s~l~f~veL~~~~~~kd  117 (117)
T d1q1ca2          81 LKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKE  117 (117)
T ss_dssp             ECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECCCC
T ss_pred             ECHHHhCcccCCCCCccCcCCeEEEEEEEEEEEeCCC
Confidence            999999998643  47999999999999999987654

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=5.3e-20  Score=156.68  Aligned_cols=107  Identities=21%  Similarity=0.228  Sum_probs=97.3

Q ss_pred             cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhcc------CCcCc
Q 008788          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGT------MTREE  222 (553)
Q Consensus       150 ~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~------mk~Ge  222 (553)
                      ..++|+.+.++++|.| +.|+.||.|+|||++++.+|++|+||. .+.|+.|.+|.+.+++||++++.+      |++|+
T Consensus         5 ~~psGl~y~~~~~G~G-~~p~~gd~V~v~y~g~l~~G~~fdss~~~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~~G~   83 (125)
T d1u79a_           5 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG   83 (125)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred             ECCCCCEEEEEEeccC-CCCCCCCEEEEEEEeeecCCcEEecccccCcceeEecCccccccchhhhccchhhcccccCCC
Confidence            3567999999999999 889999999999999999999999985 578999999999999999998754      99999


Q ss_pred             EEEEEEeCCccCCCCC------CCCCCCCceEEEEEEEeee
Q 008788          223 KAVIYVTSQYLTPSPL------MPVVEGCEEVHFEVELVHL  257 (553)
Q Consensus       223 ~~~~~v~~~~~~g~~~------~~~i~~~~~l~~~v~l~~~  257 (553)
                      +++++|||+++||+.+      .+.||+|++|+|+|+|+.+
T Consensus        84 k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          84 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            9999999999999853      3569999999999999875

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.80  E-value=1.3e-19  Score=160.41  Aligned_cols=115  Identities=25%  Similarity=0.345  Sum_probs=98.8

Q ss_pred             cCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHhcCCCC
Q 008788          264 LGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG  343 (553)
Q Consensus       264 ~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~~M~~G  343 (553)
                      +.+.+|+++++++|.|..   +|..|+.|+|||.+++.|  |++|+++..  .+.|  |.++.+.+|+||+.+|.+|++|
T Consensus        31 ~~~sGl~y~il~~G~G~~---~P~~gd~V~v~Y~g~l~d--G~~fds~~~--~~~p--~~~~~~~~i~G~~e~l~~M~~G  101 (160)
T d1jvwa_          31 KLPSGLVFQRIARGSGKR---APAIDDKCEVHYTGRLRD--GTVFDSSRE--RGKP--TTFRPNEVIKGWTEALQLMREG  101 (160)
T ss_dssp             ECTTSCEEEEEECCCCSB---CCCTTCCEEEEEEEECTT--SCEEEEHHH--HTSC--EEECGGGSCHHHHHHHTTCCTT
T ss_pred             ECCCCCEEEEEECccccc---CCCCCcceEEEEEEEEcc--CCeeeeecc--ccCc--cccCccccchhHHHHhcCcccc
Confidence            356789999999999973   357899999999999876  999865542  3456  4566678999999999999999


Q ss_pred             cEEEEEeCCCCcccCCCCCCCCCCCCeEEEEEEEeeeecCCCCC
Q 008788          344 EIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWT  387 (553)
Q Consensus       344 E~~~~~~~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~~~~  387 (553)
                      |+++|+|||++|||..|.++.||++++|+|+|+|++++....+.
T Consensus       102 e~~~v~iPp~laYG~~g~~~~IPp~s~LifeIeLl~i~~~~~~~  145 (160)
T d1jvwa_         102 DRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGGKGR  145 (160)
T ss_dssp             CEEEEEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGGCCSC
T ss_pred             ceeEEEeCHHHCcCCCCCCCCcCcCCcEEEEEEEEEEecCCCCC
Confidence            99999999999999999888899999999999999998765543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.2e-18  Score=146.71  Aligned_cols=115  Identities=26%  Similarity=0.456  Sum_probs=107.5

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..++++|+.+|+.|+|++|+..|++||+    .+|.+           ..+|+++|.||+++++|.+|+.+|.+++++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHN-----------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcc-----------hhhhhcccccccccccccccchhhhhHHHh
Confidence            467889999999999999999999999999    78877           679999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~  527 (553)
                      +|+++.+|+++|.++..+|+|++|+.+|++|++++|++ ..+...+..++.
T Consensus        67 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~l~~  116 (117)
T d1elwa_          67 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN-PQLKEGLQNMEA  116 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHhC
Confidence            99999999999999999999999999999999999998 568877777754

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8.1e-18  Score=149.62  Aligned_cols=122  Identities=27%  Similarity=0.456  Sum_probs=112.6

Q ss_pred             hhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  471 (553)
Q Consensus       392 ~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  471 (553)
                      +..++.|+.++.+||.+|+.|+|.+|+..|++|++    ++|.+           ..+|+|+|.|++.++++.+|+.+|.
T Consensus         4 ~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~   68 (159)
T d1a17a_           4 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRSLAYLRTECYGYALGDAT   68 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccc----cchhh-----------hhhhhhhHHHHHhccccchHHHHHH
Confidence            45678999999999999999999999999999999    68877           7799999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       472 ~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      ++|+++|+++.+|+++|.++..+|+|++|+.+|+++++++|++ ..+...+..+....
T Consensus        69 kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~-~~~~~~l~~~~~~~  125 (159)
T d1a17a_          69 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKIV  125 (159)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999997 56777777665544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=9.3e-17  Score=147.48  Aligned_cols=102  Identities=25%  Similarity=0.443  Sum_probs=97.6

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      |+.+++.||.+|+.|+|++|+..|++||.    .+|.+           ..+|+|+|.||+++++|++|+.+|.+|+.++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~----~~p~~-----------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLV-----------AVYYTNRALCYLKMQQPEQALADCRRALELD   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            67899999999999999999999999999    78877           7899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      |+++++|+++|.+|..+|+|++|+.+|++|++++|++
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999998853

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.1e-16  Score=133.13  Aligned_cols=119  Identities=22%  Similarity=0.369  Sum_probs=104.9

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      +.|.++++.|+.+|+.|+|.+|+.+|++||+    ++|.+           ..+++|+|.||.++++|.+|+.+|++|+.
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTN-----------MTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccc-----------HHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            3688999999999999999999999999999    67776           67999999999999999999999999999


Q ss_pred             hCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 008788          476 ANPAHV-------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRK  531 (553)
Q Consensus       476 ~dp~n~-------ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~  531 (553)
                      ++|.+.       ++|+++|.++..+++|++|+.+|++++.++|+  .++...+..+.+.+++
T Consensus        67 l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~--~~~~~~l~~~~k~lke  127 (128)
T d1elra_          67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--PDVLKKCQQAEKILKE  127 (128)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHhC
Confidence            998774       57888899999999999999999999999986  3566667666655543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.8e-14  Score=121.37  Aligned_cols=112  Identities=14%  Similarity=0.188  Sum_probs=96.8

Q ss_pred             hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCC
Q 008788          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVLDANPA  479 (553)
Q Consensus       403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~al~~dp~  479 (553)
                      +..|.++..++|.+|.+.|++||.    .+|.+           ..+++|+|.|+++.+   ++.+|+..+++++..+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~----~~p~~-----------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~   68 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKA----AGSVS-----------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK   68 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH----HSCCC-----------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC
Confidence            566788888999999999999999    78887           679999999998754   566799999999999986


Q ss_pred             C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008788          480 H--VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRR  530 (553)
Q Consensus       480 n--~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~  530 (553)
                      +  +.+||.+|.+|..+|+|++|+.+|++||+++|+| ..+...+..+.+++.
T Consensus        69 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~-~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN-NQAKELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHHc
Confidence            6  4599999999999999999999999999999998 457776666665543

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.52  E-value=4.3e-15  Score=129.43  Aligned_cols=75  Identities=17%  Similarity=0.334  Sum_probs=67.5

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEecccc---------CCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCcc
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSE---------YGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHY  115 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~---------~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~  115 (553)
                      +++||.|.+||++++.||++|+||++.         .+....|+.|.+|.++++|||+++|.+|++|+++.|.|||+.||
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ay   81 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhc
Confidence            689999999999999999999999742         02245799999999999999999999999999999999999999


Q ss_pred             CCCC
Q 008788          116 GEDD  119 (553)
Q Consensus       116 g~~~  119 (553)
                      |.++
T Consensus        82 G~~d   85 (151)
T d1ix5a_          82 GNRN   85 (151)
T ss_dssp             CSCC
T ss_pred             cccc
Confidence            9865

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.46  E-value=3.4e-14  Score=111.15  Aligned_cols=83  Identities=14%  Similarity=0.217  Sum_probs=75.2

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~  124 (553)
                      +..||.|+|+|+++. ||+.|+++.      ...+.+.+|.++++|||+++|.||++|+++.|.|++..+|+..+++   
T Consensus         2 ~a~GD~V~idy~g~~-dG~~~~~~~------~~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~la---   71 (85)
T d1hxva_           2 LANGDIAIIDFTGIV-DNKKLASAS------AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKELQ---   71 (85)
T ss_dssp             CCSSEEEEEEEEEEE-TTEECSTTC------CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGGG---
T ss_pred             CCCCCEEEEEEEEEE-CCEEccccc------ccCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCcccCC---
Confidence            678999999999995 999998765      3578899999999999999999999999999999999999987653   


Q ss_pred             CCCCCCCCeEEEEEEEEee
Q 008788          125 PSTFPKDEELHFEIEMIDF  143 (553)
Q Consensus       125 ~~~i~~~~~l~~~v~l~~~  143 (553)
                            |+++.|+|+|.++
T Consensus        72 ------Gk~~~f~V~v~~V   84 (85)
T d1hxva_          72 ------SKPVTFEVVLKAI   84 (85)
T ss_dssp             ------SCCCEEEEEECCB
T ss_pred             ------CCcEEEEEEEEEe
Confidence                  8999999999876

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=7.4e-13  Score=125.71  Aligned_cols=105  Identities=21%  Similarity=0.241  Sum_probs=99.8

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+..+|..+++.|+|++|+..|++||.    ++|.+           ..+|+++|.||.++|++++|+.+|+++++
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~----l~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~   99 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALA----IRPDM-----------PEVFNYLGIYLTQAGNFDAAYEAFDSVLE   99 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhc----cCCCC-----------HHHHhhhchHHHHHHHHHHhhhhhhHHHH
Confidence            3578889999999999999999999999999    78877           67899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      ++|+++.+++++|.++..+|++++|+..|+++++++|++.
T Consensus       100 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  139 (259)
T d1xnfa_         100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  139 (259)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccH
Confidence            9999999999999999999999999999999999999863

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.41  E-value=7.8e-13  Score=116.39  Aligned_cols=117  Identities=18%  Similarity=0.255  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (553)
Q Consensus       394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  473 (553)
                      .+..+...+..|+.+|..|+|++|+..|++||+.........   ..........+|+|+|.||.++|+|++|+.+|+++
T Consensus         5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~---~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~a   81 (156)
T d2hr2a1           5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhh---hcccchhHHHHHHHHHHHHHHcCccchhhHhhhhh
Confidence            345667777889999999999999999999999554432111   01112223578999999999999999999999999


Q ss_pred             HhhCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788          474 LDANPA-----------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       474 l~~dp~-----------n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~  513 (553)
                      |.+.|.           ..++|+++|.+|..+|++++|+.+|++|+++.|.
T Consensus        82 l~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          82 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            987542           3568999999999999999999999999999764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8.6e-13  Score=120.38  Aligned_cols=101  Identities=14%  Similarity=0.210  Sum_probs=90.4

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      ..+..+.++|..++..|+|+.|+..|.++       .+.+           ..+++|+|.||+++|+|++|+.+|++||+
T Consensus         3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~i-------~~~~-----------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~   64 (192)
T d1hh8a_           3 VEAISLWNEGVLAADKKDWKGALDAFSAV-------QDPH-----------SRICFNIGCMYTILKNMTEAEKAFTRSIN   64 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTS-------SSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHhc-------CCCC-----------HHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            35667789999999999999999999753       2223           45789999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      +||+++.+|+++|.+|.++|+|++|+.+|++|+...|.|
T Consensus        65 ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          65 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            999999999999999999999999999999999987754

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.40  E-value=1.1e-13  Score=120.38  Aligned_cols=74  Identities=15%  Similarity=0.174  Sum_probs=68.0

Q ss_pred             CCCCceEEEEEEEEeCCCcEEeecC--------------CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccC
Q 008788          169 PRAPYEVKAWISAKTGDGKLILSHR--------------EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT  234 (553)
Q Consensus       169 ~~~gd~V~v~y~~~~~~g~~~~s~~--------------~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~  234 (553)
                      +++||.|++||++++.||++|+||.              .++|++|.+|.++++|||+++|.+|++|+++.+.|||+.||
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ay   81 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhc
Confidence            5789999999999999999999884              45799999999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q 008788          235 PSPLMPVV  242 (553)
Q Consensus       235 g~~~~~~i  242 (553)
                      |.+.+..+
T Consensus        82 G~~d~~~v   89 (151)
T d1ix5a_          82 GNRNEMLI   89 (151)
T ss_dssp             CSCCSTTB
T ss_pred             cccccCcc
Confidence            98776544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.40  E-value=4.9e-13  Score=116.21  Aligned_cols=114  Identities=18%  Similarity=0.180  Sum_probs=97.0

Q ss_pred             hccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc----------CCHHHHHHHHHHHH
Q 008788          405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL----------GECRKSIEACNKVL  474 (553)
Q Consensus       405 G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl----------~~~~~A~~~~~~al  474 (553)
                      +..+-+.+.|++|+..|++|++    ++|.+           ..+++|+|.|++.+          +.+++|+.++++|+
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~----~~P~~-----------~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl   68 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYK----SNPLD-----------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL   68 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHh----hCCcc-----------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            4455566789999999999999    89988           67999999999865          44688999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q 008788          475 DANPAHVKGLYRRGMAYMALGE-----------FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKV  534 (553)
Q Consensus       475 ~~dp~n~ka~~r~g~a~~~lg~-----------~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~  534 (553)
                      +++|+++.+|+++|.+|..+|+           |++|+++|++|++++|+| ...+..|..+.+......+
T Consensus        69 ~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~-~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1          69 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN-THYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHTHHHHHHH
T ss_pred             HhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCH-HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998764           799999999999999998 4688888777666554444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.38  E-value=9e-13  Score=109.12  Aligned_cols=93  Identities=12%  Similarity=0.043  Sum_probs=87.7

Q ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (553)
Q Consensus       401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n  480 (553)
                      ....|..+++.|++.+|+..|++|+.    .+|.+           ..+|+++|.|+.+++++.+|+.+++++++++|++
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   83 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQ----KEPER-----------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   83 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcc----ccccc-----------chhhhhhhhhhhhhhhHHHhhccccccccccccc
Confidence            35689999999999999999999999    67776           6799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          481 VKGLYRRGMAYMALGEFEEAQRDFEMMM  508 (553)
Q Consensus       481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al  508 (553)
                      ..+|+.+|.+|..+|++++|++.|++.|
T Consensus        84 ~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          84 IAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            9999999999999999999999999886

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.31  E-value=1.6e-12  Score=101.38  Aligned_cols=84  Identities=21%  Similarity=0.156  Sum_probs=73.8

Q ss_pred             CCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCceE
Q 008788          169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEV  248 (553)
Q Consensus       169 ~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~~l  248 (553)
                      +..||.|+|+|+++. ||+.|+++. .+.+.|.+|.++++|||+++|.+|++|+++.|.|++...|+...    .+++++
T Consensus         2 ~a~GD~V~idy~g~~-dG~~~~~~~-~~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~----laGk~~   75 (85)
T d1hxva_           2 LANGDIAIIDFTGIV-DNKKLASAS-AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKE----LQSKPV   75 (85)
T ss_dssp             CCSSEEEEEEEEEEE-TTEECSTTC-CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSG----GGSCCC
T ss_pred             CCCCCEEEEEEEEEE-CCEEccccc-ccCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCccc----CCCCcE
Confidence            568999999999975 999888654 46789999999999999999999999999999999999998653    367899


Q ss_pred             EEEEEEeeee
Q 008788          249 HFEVELVHLI  258 (553)
Q Consensus       249 ~~~v~l~~~~  258 (553)
                      .|+|+|++++
T Consensus        76 ~f~V~v~~Vk   85 (85)
T d1hxva_          76 TFEVVLKAIK   85 (85)
T ss_dssp             EEEEEECCBC
T ss_pred             EEEEEEEEeC
Confidence            9999998873

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.2e-11  Score=109.70  Aligned_cols=101  Identities=9%  Similarity=0.096  Sum_probs=92.5

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp  478 (553)
                      ..+.+.|..++..|+|++|+..|++||+    ++|.+           ..+|+|+|.||.++++|++|+.+|++|+...+
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~----ldp~~-----------~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~  101 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSIN----RDKHL-----------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  101 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHH----Hhhhh-----------hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCc
Confidence            3577999999999999999999999999    77776           78999999999999999999999999998765


Q ss_pred             CC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          479 AH----------------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       479 ~n----------------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      .|                ..++|++|.++..++++++|++.|.+|+++.|+.
T Consensus       102 ~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         102 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            44                4789999999999999999999999999999874

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.7e-11  Score=118.66  Aligned_cols=102  Identities=22%  Similarity=0.364  Sum_probs=94.1

Q ss_pred             HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (553)
Q Consensus       399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp  478 (553)
                      ..+...|..++..|++++|+..|++++.    ..|.+           ..+++++|.|+.++|++++|+.+|.++++++|
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  237 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALS----VRPND-----------YLLWNKLGATLANGNQSEEAVAAYRRALELQP  237 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccc----ccccc-----------ccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence            3456778889999999999999999998    66765           67899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       479 ~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      +++.+|+.+|.+|..+|+|++|+..|++|++++|++.
T Consensus       238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  274 (323)
T d1fcha_         238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR  274 (323)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCh
Confidence            9999999999999999999999999999999999864

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=9.8e-11  Score=115.06  Aligned_cols=124  Identities=9%  Similarity=0.007  Sum_probs=78.5

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhH------------------H------HHHhhhhhHHHHH
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE------------------G------KVFVGKRNLLHLN  452 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee------------------~------~~~~~~~~~~~~n  452 (553)
                      .++.+-..|..+.+.+++++|+..|++||+    ++|.+-.-                  .      -........+|++
T Consensus        42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~----lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~  117 (315)
T d2h6fa1          42 FRDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  117 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHH----HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            344444556666666666666666666666    44444110                  0      0011112457777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      +|.++.+++++++|+..++++++++|+|..+|+.+|.++..+++|++|+.+|++|++++|+|. .+...+..+
T Consensus       118 ~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~-~a~~~r~~~  189 (315)
T d2h6fa1         118 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN-SVWNQRYFV  189 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH-HHHHHHHHH
T ss_pred             HhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccH-HHHHHHHHH
Confidence            777777777777777777777777777777777777777777777777777777777777763 354444444

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=6.7e-11  Score=116.29  Aligned_cols=123  Identities=8%  Similarity=-0.037  Sum_probs=91.8

Q ss_pred             HHHHHhhhccccccC-CHHHHHHHHHHHHHHhhccCCCChhHH-----------------------HHHhhhhhHHHHHH
Q 008788          398 AEKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEG-----------------------KVFVGKRNLLHLNV  453 (553)
Q Consensus       398 a~~~k~~G~~~~~~g-~~~~A~~~Y~~Al~~l~~~~~~~~ee~-----------------------~~~~~~~~~~~~nl  453 (553)
                      ...+..+|+.+...+ ++++|+..|++|++    .+|.+..-+                       -.+......+|+|+
T Consensus        77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~----~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~  152 (315)
T d2h6fa1          77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIE----EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR  152 (315)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCcCHHHHHHHHHHHHH----HHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHH
Confidence            334556666655544 36666666666666    344332100                       01122236799999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE------FEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~------~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      |.|+.++++|++|+.+|+++|+++|.|..||+.||.++..++.      +++|+..+.++++++|+| ..+...+..+
T Consensus       153 ~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~-~~~~~~l~~l  229 (315)
T d2h6fa1         153 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-ESAWNYLKGI  229 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCc-hHHHHHHHHH
Confidence            9999999999999999999999999999999999999999887      689999999999999996 7666655544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.15  E-value=4.3e-10  Score=100.73  Aligned_cols=119  Identities=15%  Similarity=0.154  Sum_probs=101.6

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccC-----C--CChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-----P--QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  467 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~-----~--~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~  467 (553)
                      +...+.+...|+.++..|++++|+..|.+|+.+.....     .  .-..+...+......++.+++.+++++|+|.+|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            45678889999999999999999999999999543210     0  1112344566667789999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCC
Q 008788          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM-------MKVDKS  513 (553)
Q Consensus       468 ~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~a-------l~l~P~  513 (553)
                      .+|++++.++|.+..+|++++.+|..+|++.+|++.|+++       +-++|+
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            9999999999999999999999999999999999999998       557887

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=2.3e-10  Score=108.03  Aligned_cols=110  Identities=17%  Similarity=0.160  Sum_probs=90.2

Q ss_pred             cccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008788          407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR  486 (553)
Q Consensus       407 ~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r  486 (553)
                      .+....+++.|+..+++++.    .....+       .....+++++|.||.++|+|++|+.++++||.++|+++.+|++
T Consensus         8 ~~~~~~~~e~al~~~~e~l~----~~~~~~-------~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~   76 (259)
T d1xnfa_           8 PLQPTLQQEVILARMEQILA----SRALTD-------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNY   76 (259)
T ss_dssp             CCCCCHHHHHHHHHHHHHHT----SSCCCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHH----hhhcCC-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhh
Confidence            34455678889999998876    222221       1236789999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          487 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       487 ~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      +|.+|..+|++++|+.+|++|++++|++. .+...+..+-..
T Consensus        77 lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~  117 (259)
T d1xnfa_          77 LGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCT-HHHHHHHHHHHH
T ss_pred             hchHHHHHHHHHHhhhhhhHHHHHHhhhh-hhHHHHHHHHHH
Confidence            99999999999999999999999999974 455555554433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.6e-10  Score=92.20  Aligned_cols=89  Identities=15%  Similarity=0.158  Sum_probs=74.8

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      ++.+.+.|+.+|+.|+|.+|+..|++|++........        ......++.|+|.|+.++|+|++|+.++++||+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~--------~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIS--------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC--------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc--------CccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            5567799999999999999999999999965432111        11236789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHc
Q 008788          478 PAHVKGLYRRGMAYMAL  494 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~l  494 (553)
                      |+++.|+++++.....+
T Consensus        77 P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          77 PEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999998876654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2e-10  Score=113.69  Aligned_cols=123  Identities=14%  Similarity=0.182  Sum_probs=95.2

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHH-----------------------HHHhhhhhHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------------KVFVGKRNLLHLNVA  454 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~-----------------------~~~~~~~~~~~~nla  454 (553)
                      +..+...|..+++.|++++|+..|++|++    ..|.+.+-.                       .........++.+++
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  312 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIE----LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA  312 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHH
Confidence            45566778888888889999999998888    556543210                       001112245778889


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      .++.+++++++|+..++++++++|+++.+++.+|.++..+|++++|+..|++|++++|++ .++...|..+
T Consensus       313 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~lg~~  382 (388)
T d1w3ba_         313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-ADAYSNMGNT  382 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC-HHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999987 4455555444

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.1e-10  Score=110.84  Aligned_cols=98  Identities=13%  Similarity=0.132  Sum_probs=93.4

Q ss_pred             HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008788          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (553)
Q Consensus       402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~  481 (553)
                      .++|..+++.|+|++|+..|++|++    .+|.+           ..+|.++|.|+..++++++|+..+.++++++|++.
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   87 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQ----QDPKH-----------MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ   87 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH----SCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCChHHHHHHHHhhhccccccc
Confidence            4689999999999999999999999    78877           67899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      .+|+.+|.++..+|++++|++.|++++.++|.+
T Consensus        88 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  120 (323)
T d1fcha_          88 TALMALAVSFTNESLQRQACEILRDWLRYTPAY  120 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred             cccccccccccccccccccccchhhHHHhccch
Confidence            999999999999999999999999999999874

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.4e-10  Score=111.92  Aligned_cols=99  Identities=16%  Similarity=0.269  Sum_probs=93.0

Q ss_pred             HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008788          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (553)
Q Consensus       402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~  481 (553)
                      .+.|+.+|+.|+|++|+..|+++++    ..|.+           ..+++++|.|+.++++|++|+..++++++++|+++
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~   67 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWR----QEPDN-----------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA   67 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            3678899999999999999999998    67776           56899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      .+|+++|.++..+|++++|+..+..+++.+|.+.
T Consensus        68 ~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  101 (388)
T d1w3ba_          68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI  101 (388)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhhhhccccccccccccccccccccc
Confidence            9999999999999999999999999999999864

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.06  E-value=1.3e-09  Score=89.61  Aligned_cols=87  Identities=14%  Similarity=0.075  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~  527 (553)
                      ..++++|.++++.|++.+|+..++++++.+|+++.+|+.+|.++.+++++++|+.+|++|++++|++ ..+...|..+-.
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~la~~y~   95 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHT   95 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc-ccchHHHHHHHH
Confidence            3467899999999999999999999999999999999999999999999999999999999999997 457777777766


Q ss_pred             HHHHHHHH
Q 008788          528 QRRKLKVR  535 (553)
Q Consensus       528 ~~~~~~~~  535 (553)
                      ......+.
T Consensus        96 ~~g~~~~A  103 (112)
T d1hxia_          96 NEHNANAA  103 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HCCCHHHH
Confidence            66554443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=6.2e-10  Score=88.58  Aligned_cols=82  Identities=11%  Similarity=0.037  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT  519 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n-------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~  519 (553)
                      ..-++++|..++++|+|.+|+..+.+|+++.|.+       +.+|+.+|.++.++|+|++|++.|++||+++|++. .+.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~-~a~   83 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ-RAN   83 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH-HHH
Confidence            3456799999999999999999999999986543       67899999999999999999999999999999984 577


Q ss_pred             HHHHHHHHHH
Q 008788          520 AALSKLKKQR  529 (553)
Q Consensus       520 ~~l~~l~~~~  529 (553)
                      ..+..+++.+
T Consensus        84 ~Nl~~~~~~l   93 (95)
T d1tjca_          84 GNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7676666554

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=4.6e-10  Score=90.82  Aligned_cols=89  Identities=18%  Similarity=0.292  Sum_probs=75.4

Q ss_pred             CCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCC
Q 008788           43 STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPV  122 (553)
Q Consensus        43 ~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~  122 (553)
                      +.++.||.|.|+|+++ .||+.+++..      ...+.+.+|.+.+++||+.+|.||++|+++.|.+.....|....+  
T Consensus        13 r~a~~GD~v~id~~~~-~dG~~~~~~~------~~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~~l--   83 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGS-VDGEEFEGGK------ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL--   83 (106)
T ss_dssp             SSCCTTEEEEEEEECC-SSSSCCSTTE------EEEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCCTTT--
T ss_pred             ccccCCCEEEEEEEEE-ECCEECCCCc------ccceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCchhh--
Confidence            4468899999999997 5999887443      346899999999999999999999999999999987778865544  


Q ss_pred             CCCCCCCCCCeEEEEEEEEeeeccc
Q 008788          123 AAPSTFPKDEELHFEIEMIDFAKAK  147 (553)
Q Consensus       123 ~~~~~i~~~~~l~~~v~l~~~~~~~  147 (553)
                             +|.++.|+|+|.++....
T Consensus        84 -------aGK~v~f~V~v~~i~~~~  101 (106)
T d1l1pa_          84 -------KGKAAKFAINLKKVEERE  101 (106)
T ss_dssp             -------TTCCEEEEEEEEEEECCC
T ss_pred             -------CCCEEEEEEEEEEecccc
Confidence                   389999999999997643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=2.6e-09  Score=96.54  Aligned_cols=83  Identities=14%  Similarity=0.137  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (553)
Q Consensus       448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~  527 (553)
                      .-+.+.|.++++.|+|++|+..|++||+++|.++.+|+.+|.||..+|+|++|+.+|++|++++|++ ..+...+..+..
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~-~~a~~~lg~~~~   83 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc-HHHHHHHHHHHH
Confidence            3456889999999999999999999999999999999999999999999999999999999999997 446555665555


Q ss_pred             HHHH
Q 008788          528 QRRK  531 (553)
Q Consensus       528 ~~~~  531 (553)
                      .+..
T Consensus        84 ~l~~   87 (201)
T d2c2la1          84 EMES   87 (201)
T ss_dssp             HTTC
T ss_pred             HCCC
Confidence            5443

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.91  E-value=7.7e-10  Score=90.74  Aligned_cols=87  Identities=18%  Similarity=0.300  Sum_probs=74.6

Q ss_pred             CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (553)
Q Consensus        45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~  124 (553)
                      ++.||.|+|+|+++ .||+.++..      ....+.+.+|.+.++++|+.+|.||++|++++|.+.....|....+.   
T Consensus        24 a~~gD~v~id~~~~-~dG~~~~~~------~~~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~la---   93 (113)
T d1t11a3          24 AENGKRVSIDFVGS-IDGVEFEGG------KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENLK---   93 (113)
T ss_dssp             CCTTCEEEEEEEEE-SSSSCCTTC------EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTTS---
T ss_pred             ccCCCEEEEEEEEE-ECCEEccCC------ccceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCccccC---
Confidence            68999999999998 589988744      34579999999999999999999999999999998877778765543   


Q ss_pred             CCCCCCCCeEEEEEEEEeeeccc
Q 008788          125 PSTFPKDEELHFEIEMIDFAKAK  147 (553)
Q Consensus       125 ~~~i~~~~~l~~~v~l~~~~~~~  147 (553)
                            |.++.|.|+|.++....
T Consensus        94 ------Gk~~~f~v~v~~Ik~~~  110 (113)
T d1t11a3          94 ------GKAAKFAIKVNKVEARE  110 (113)
T ss_dssp             ------SCEEEECCCEEEEEEEE
T ss_pred             ------CCeEEEEEEEEEEEecc
Confidence                  89999999999997543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=6e-09  Score=91.01  Aligned_cols=79  Identities=15%  Similarity=0.118  Sum_probs=69.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~  526 (553)
                      +..+...|.++++.++|++|+..+++|++++|+++.+|+++|.+++.+|++++|+.+|++|++++|++. .+...+..+.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~-~a~~~~g~~~   88 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI-KGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccch-HHHHHHHHHH
Confidence            445668899999999999999999999999999999999999999999999999999999999999973 3444444433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=8.4e-09  Score=85.20  Aligned_cols=81  Identities=11%  Similarity=0.135  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788          450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (553)
Q Consensus       450 ~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~  529 (553)
                      +.+.|..+++.|+|++|+..|+++|.++|+++.+|+.+|.+|..+|+|++|+.+|.++++++|++ ..+...+..+...+
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~   84 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccch-hhHHHHHHHHHHHc
Confidence            45789999999999999999999999999999999999999999999999999999999999997 45666666655554


Q ss_pred             HH
Q 008788          530 RK  531 (553)
Q Consensus       530 ~~  531 (553)
                      ..
T Consensus        85 ~~   86 (117)
T d1elwa_          85 NR   86 (117)
T ss_dssp             TC
T ss_pred             cC
Confidence            43

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=4.9e-09  Score=88.17  Aligned_cols=69  Identities=12%  Similarity=0.267  Sum_probs=65.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      +..+-++|.++++.++|++|+.+++++|+++|+++.+|+.+|.||..+|+|++|+.+|++|++++|++.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~   72 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR   72 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH
Confidence            345679999999999999999999999999999999999999999999999999999999999999763

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.78  E-value=1.4e-08  Score=89.61  Aligned_cols=90  Identities=11%  Similarity=0.055  Sum_probs=81.8

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .+..+.++|..+++.|+|.+|+..|++||+    ++|.+           ..+|+++|.||..+++|++|+.++.+++++
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~----~~p~~-----------~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALE----IDPSN-----------TKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhh----hhhhh-----------hhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            456677889999999999999999999999    78877           678999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHH
Q 008788          477 NPAHVKGLYRRGMAYMALGEFEEAQ  501 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg~~~~A~  501 (553)
                      +|+|..++..++.++..+..+.++.
T Consensus       141 ~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         141 APEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988887776654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.71  E-value=3.8e-08  Score=86.71  Aligned_cols=87  Identities=16%  Similarity=0.108  Sum_probs=78.0

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+.+.|..+++.++|.+|+..|++|+.    ++|.+           ..+++++|.||..+++|.+|+.++.+++.++
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~----l~p~~-----------~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~  128 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALG----LDSAN-----------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  128 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhh----cccch-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44566799999999999999999999999    78877           7899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEE  499 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~  499 (553)
                      |+|..++..++.+...++++.+
T Consensus       129 P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         129 PQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhHHH
Confidence            9999999998888777766544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=4e-08  Score=86.78  Aligned_cols=89  Identities=11%  Similarity=0.034  Sum_probs=80.2

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+.+.|..+++.|+|.+|+..|++||.    ++|.+           ..+++++|.||..+|+|++|+.++.+|++++
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~----~~p~~-----------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALE----LDSNN-----------EKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhh----ccccc-----------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            34556789999999999999999999999    78877           7799999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHH
Q 008788          478 PAHVKGLYRRGMAYMALGEFEEAQ  501 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg~~~~A~  501 (553)
                      |+|..+...++.++..+.++.+..
T Consensus       127 P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         127 PNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988887776554

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=3.1e-08  Score=79.78  Aligned_cols=87  Identities=17%  Similarity=0.164  Sum_probs=70.2

Q ss_pred             CCCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCc
Q 008788          167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE  246 (553)
Q Consensus       167 ~~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~  246 (553)
                      +.++.||.|+|+|++ ..||+.+.+. ..+.+.|.+|.+.+++||+++|.||++|++..|.+.--..|..    .--+++
T Consensus        13 r~a~~GD~v~id~~~-~~dG~~~~~~-~~~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~----~~laGK   86 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTG-SVDGEEFEGG-KASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHA----ENLKGK   86 (106)
T ss_dssp             SSCCTTEEEEEEEEC-CSSSSCCSTT-EEEEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCC----TTTTTC
T ss_pred             ccccCCCEEEEEEEE-EECCEECCCC-cccceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCc----hhhCCC
Confidence            456789999999998 4688877643 2356899999999999999999999999999999974444432    223678


Q ss_pred             eEEEEEEEeeeee
Q 008788          247 EVHFEVELVHLIQ  259 (553)
Q Consensus       247 ~l~~~v~l~~~~~  259 (553)
                      ++.|+|+|+++.+
T Consensus        87 ~v~f~V~v~~i~~   99 (106)
T d1l1pa_          87 AAKFAINLKKVEE   99 (106)
T ss_dssp             CEEEEEEEEEEEC
T ss_pred             EEEEEEEEEEecc
Confidence            9999999999964

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.64  E-value=4.3e-08  Score=84.90  Aligned_cols=83  Identities=13%  Similarity=0.063  Sum_probs=75.3

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d  477 (553)
                      +..+.+.|..+++.++|.+|+..|++||.    ++|.+           ..+|+++|.||..+|+|++|+.++.++++++
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~----~~p~~-----------~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLK----IDKNN-----------VKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhcccc----ccchh-----------hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44566899999999999999999999999    78877           6799999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcC
Q 008788          478 PAHVKGLYRRGMAYMALG  495 (553)
Q Consensus       478 p~n~ka~~r~g~a~~~lg  495 (553)
                      |+|..+...++.+..++.
T Consensus       132 P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         132 PNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999988888776654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=4.5e-08  Score=101.89  Aligned_cols=108  Identities=8%  Similarity=-0.064  Sum_probs=75.2

Q ss_pred             HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (553)
Q Consensus       400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~  479 (553)
                      .+...|..+.+.+++..|+..|.+++..                 ....++.|+|.++..+++|++|+.+|.+|+.++|+
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~-----------------~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~  184 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSCSY-----------------ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS  184 (497)
T ss_dssp             ---------------------CCHHHHH-----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            3445566666666666666666666551                 12468899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      +..+|+.+|.++...|++.+|+.+|.+|+.++|... .++..|..+
T Consensus       185 ~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~-~a~~nL~~~  229 (497)
T d1ya0a1         185 NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP-AASTNLQKA  229 (497)
T ss_dssp             BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH-HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHH
Confidence            999999999999999999999999999999999874 455555444

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=8.4e-08  Score=92.24  Aligned_cols=109  Identities=9%  Similarity=0.097  Sum_probs=90.8

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  475 (553)
                      +.++.+.+.|+.+...++|++|+..|.+|+++.......         .....+|.|+|.||.+++++++|+.+++++++
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~---------~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~  105 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE---------DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ  105 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence            346678888888889999999999999999965543221         11267899999999999999999999999999


Q ss_pred             hCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC
Q 008788          476 ANPAH------VKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       476 ~dp~n------~ka~~r~g~a~~~-lg~~~~A~~~l~~al~l~P~  513 (553)
                      +.+.+      ..++.++|.++.. +++|++|+..|++|+++.+.
T Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~  150 (290)
T d1qqea_         106 IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ  150 (290)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            87655      6789999999865 79999999999999988543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=3.6e-07  Score=74.67  Aligned_cols=83  Identities=17%  Similarity=0.242  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008788          447 NLLHLNVAACLLKLG---ECRKSIEACNKVLDANPAHV-KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  522 (553)
Q Consensus       447 ~~~~~nla~~~~kl~---~~~~A~~~~~~al~~dp~n~-ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l  522 (553)
                      ....+|.|.|+.+..   +..+|+..+..+++.+|.+. .+||.+|.+|.++|+|+.|++.++++|+++|+|. .+....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~-qA~~L~  113 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK-QVGALK  113 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-HHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH-HHHHHH
Confidence            457789999999875   46789999999999998764 7999999999999999999999999999999984 466555


Q ss_pred             HHHHHHHH
Q 008788          523 SKLKKQRR  530 (553)
Q Consensus       523 ~~l~~~~~  530 (553)
                      +.+.+++.
T Consensus       114 ~~Ie~~~~  121 (124)
T d2pqrb1         114 SMVEDKIQ  121 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            55555543

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.52  E-value=5.4e-08  Score=79.41  Aligned_cols=86  Identities=17%  Similarity=0.110  Sum_probs=68.9

Q ss_pred             CCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCce
Q 008788          168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE  247 (553)
Q Consensus       168 ~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~~  247 (553)
                      .++.||.|+++|+++ .||+.+... .+..+.|.+|.+.++|||+++|.||++|+++.+.++--..|...    --.+++
T Consensus        23 ~a~~gD~v~id~~~~-~dG~~~~~~-~~~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~----~laGk~   96 (113)
T d1t11a3          23 AAENGKRVSIDFVGS-IDGVEFEGG-KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAE----NLKGKA   96 (113)
T ss_dssp             CCCTTCEEEEEEEEE-SSSSCCTTC-EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCT----TTSSCE
T ss_pred             cccCCCEEEEEEEEE-ECCEEccCC-ccceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCcc----ccCCCe
Confidence            478899999999995 578876543 34578999999999999999999999999998888743334321    126789


Q ss_pred             EEEEEEEeeeee
Q 008788          248 VHFEVELVHLIQ  259 (553)
Q Consensus       248 l~~~v~l~~~~~  259 (553)
                      +.|.|+|++++.
T Consensus        97 ~~f~v~v~~Ik~  108 (113)
T d1t11a3          97 AKFAIKVNKVEA  108 (113)
T ss_dssp             EEECCCEEEEEE
T ss_pred             EEEEEEEEEEEe
Confidence            999999999864

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.4e-07  Score=78.32  Aligned_cols=84  Identities=12%  Similarity=0.097  Sum_probs=67.3

Q ss_pred             HHHHHhhhccccccC---CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (553)
Q Consensus       398 a~~~k~~G~~~~~~g---~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  474 (553)
                      ...+.+.|..+++.+   ++.+|+..|++++.    .+|.+         ....+++|+|.||.++|+|++|+.+++++|
T Consensus        33 ~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~----~~~~~---------~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL   99 (122)
T d1nzna_          33 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP----KGSKE---------EQRDYVFYLAVGNYRLKEYEKALKYVRGLL   99 (122)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT----TSCHH---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh----ccCCc---------hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            445667888887644   55679999999887    44422         124589999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHc
Q 008788          475 DANPAHVKGLYRRGMAYMAL  494 (553)
Q Consensus       475 ~~dp~n~ka~~r~g~a~~~l  494 (553)
                      +++|+|..|+..++.+..++
T Consensus       100 ~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_         100 QTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHCTTCHHHHHHHHHHHHHH
T ss_pred             HhCcCCHHHHHHHHHHHHHH
Confidence            99999999998888776554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=5.4e-07  Score=86.35  Aligned_cols=111  Identities=13%  Similarity=0.108  Sum_probs=91.4

Q ss_pred             HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 008788          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVL  474 (553)
Q Consensus       396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al  474 (553)
                      ..+..+.+.|+.+.+.|++.+|+..|++|++.+.......         ....++.++|.++.. +++|++|+.++.+|+
T Consensus        75 ~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~  145 (290)
T d1qqea_          75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR---------RGANFKFELGEILENDLHDYAKAIDCYELAG  145 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccch---------hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence            3466788999999999999999999999999765532211         125678899988865 699999999999999


Q ss_pred             hhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788          475 DANPA------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (553)
Q Consensus       475 ~~dp~------n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~  515 (553)
                      ++.+.      ...++.++|.++..+|+|++|+..|++++.+.|.+.
T Consensus       146 ~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            87432      356789999999999999999999999999988753

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.39  E-value=8.4e-07  Score=83.83  Aligned_cols=93  Identities=13%  Similarity=0.113  Sum_probs=80.7

Q ss_pred             hhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008788          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  483 (553)
Q Consensus       404 ~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka  483 (553)
                      ++..+++.|++++|+..|+++++    .+|.+           ..++.+++.++...|+|++|+..++++++++|++..+
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~----~~P~d-----------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~   66 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIK----ASPKD-----------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   66 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHH----TCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH
Confidence            35667889999999999999999    89988           7799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788          484 LYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (553)
Q Consensus       484 ~~r~g~a~~~lg~~~~A~~~l~~al~l~  511 (553)
                      +..++.++...+..+++...+.+...+.
T Consensus        67 ~~~l~~ll~a~~~~~~a~~~~~~~~~~~   94 (264)
T d1zbpa1          67 ASQLRHLVKAAQARKDFAQGAATAKVLG   94 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCEECCC
T ss_pred             HHHHHHHHHhccccHHHHHHhhhhhccc
Confidence            9999988888777777766555544443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=1.1e-06  Score=85.70  Aligned_cols=115  Identities=20%  Similarity=0.137  Sum_probs=96.0

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC--HHHHHHHHHHHHh
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE--CRKSIEACNKVLD  475 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~--~~~A~~~~~~al~  475 (553)
                      ...+...++.+...+++.+|+..|++++.    .+|.+           ..++++++.++..+++  +.+|+..|.+++.
T Consensus        73 l~~l~~~~~~~~~~~~~~~al~~~~~~l~----~~pk~-----------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  137 (334)
T d1dcea1          73 LQHLETEKSPEESAALVKAELGFLESCLR----VNPKS-----------YGTWHHRCWLLSRLPEPNWARELELCARFLE  137 (334)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHhhhcchHHHHHHHHHHHHHHHHHHH----hCCCc-----------HHHHHHhhHHHHHhccccHHHHHHHHHHHHh
Confidence            34556667777788889999999999998    77877           6788999988888775  8999999999999


Q ss_pred             hCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788          476 ANPAHVKGL-YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (553)
Q Consensus       476 ~dp~n~ka~-~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~  528 (553)
                      ++|.+..++ +++|.++...+++++|+..++++++++|++. .+...+..+-..
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~-~a~~~l~~~~~~  190 (334)
T d1dcea1         138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY-SSWHYRSCLLPQ  190 (334)
T ss_dssp             HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH-HHHHHHHHHHHH
T ss_pred             hCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHH
Confidence            999999986 5678999999999999999999999999974 466555555443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.31  E-value=1.1e-06  Score=74.90  Aligned_cols=68  Identities=18%  Similarity=0.244  Sum_probs=57.6

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL----------GEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       457 ~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~l----------g~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      +-+++.|++|+..+++|++++|+|+.+|+++|.++..+          +.+++|+..|++|++++|++ ..+...+..+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~-~~a~~~lG~~   84 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh-hHHHhhHHHH
Confidence            44677899999999999999999999999999999865          45689999999999999997 4455545444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=7e-06  Score=79.76  Aligned_cols=121  Identities=12%  Similarity=-0.002  Sum_probs=86.3

Q ss_pred             CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHH----------HHHcCCHHHHHHHHHHHHhhCCCCH
Q 008788          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC----------LLKLGECRKSIEACNKVLDANPAHV  481 (553)
Q Consensus       412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~----------~~kl~~~~~A~~~~~~al~~dp~n~  481 (553)
                      ...++|+..|.++|.    .+|.+           ..+|++++.+          +...+++.+|+..++++++.+|.+.
T Consensus        43 ~~~~~al~~~~~~l~----~~P~~-----------~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~  107 (334)
T d1dcea1          43 ELDESVLELTSQILG----ANPDF-----------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY  107 (334)
T ss_dssp             CCSHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             cccHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence            345899999999999    78887           3445554444          4444558999999999999999999


Q ss_pred             HHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008788          482 KGLYRRGMAYMALGE--FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSL  548 (553)
Q Consensus       482 ka~~r~g~a~~~lg~--~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~  548 (553)
                      .+|+.+|.++..+++  +++|+..++++++++|.+.. +...+..............-..|.+.+...+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p  175 (334)
T d1dcea1         108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH-CWDYRRFVAAQAAVAPAEELAFTDSLITRNF  175 (334)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred             HHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhh-hhhhHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence            999999999999875  89999999999999999743 3322221111111222333445555555544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=1.6e-05  Score=76.14  Aligned_cols=105  Identities=15%  Similarity=0.064  Sum_probs=87.6

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      .++...-+|..++..|++++|+..|++|++    ..|.++.      .....+++++|.+|..+|++++|+..+.+++++
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~----~~~~~~~------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   80 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALE----ELPPGWF------YSRIVATSVLGEVLHCKGELTRSLALMQQTEQM   80 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TCCTTCH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCcCCCc------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            445555678899999999999999999999    5555422      123568899999999999999999999999987


Q ss_pred             CCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788          477 NPA------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (553)
Q Consensus       477 dp~------n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~  511 (553)
                      .+.      ...+++.++.++...+++..|...+.+++.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          81 ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            543      25678999999999999999999999999864

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=5.6e-06  Score=79.48  Aligned_cols=104  Identities=14%  Similarity=0.054  Sum_probs=85.8

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-  476 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-  476 (553)
                      +..+...|..+...++++.|...|.+++.    ..+.+.       ......+.|+|.+++.++++.+|+..+++++.. 
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  281 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAK----PEFANN-------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENA  281 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCC----CCCTTC-------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHH----hccccc-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            44456677788889999999999998877    333331       123457889999999999999999999999854 


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788          477 -----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (553)
Q Consensus       477 -----dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P  512 (553)
                           .|....+++.+|.+|..+|++++|++.|++|+++.+
T Consensus       282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         282 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence                 466788999999999999999999999999999865

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.94  E-value=7.7e-06  Score=70.34  Aligned_cols=65  Identities=17%  Similarity=0.154  Sum_probs=56.6

Q ss_pred             HHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788          448 LLHLNV--AACLLKLGECRKSIEACNKVLDANPAH------------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (553)
Q Consensus       448 ~~~~nl--a~~~~kl~~~~~A~~~~~~al~~dp~n------------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P  512 (553)
                      .++.++  |..++..|+|++|+..|++||+++|++            +.+|.++|.||..+|+|++|+.++++++++.|
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            344444  788889999999999999999998765            36899999999999999999999999998855

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.93  E-value=1.9e-05  Score=74.27  Aligned_cols=70  Identities=17%  Similarity=0.146  Sum_probs=61.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (553)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l  525 (553)
                      .-+++.|++++|+..+.++++.+|+|+.++..++.++..+|++++|++.|+++++++|++. .+...+..+
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~-~~~~~l~~l   73 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL-PGASQLRHL   73 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH-HHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHH
Confidence            3456789999999999999999999999999999999999999999999999999999864 344444433

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=4.5e-05  Score=61.90  Aligned_cols=67  Identities=10%  Similarity=0.040  Sum_probs=51.9

Q ss_pred             CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY  491 (553)
Q Consensus       412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~  491 (553)
                      .+..+|+..+.++++    .+|.+          ...+++++|.+|.++|+|.+|+.+|+++|+++|+|..|...+-.+.
T Consensus        52 ~d~~~gI~lLe~~~~----~~p~~----------~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1          52 NDERLGVKILTDIYK----EAESR----------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             HHHHHHHHHHHHHHH----HCGGG----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh----cCchh----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence            345667777766665    23322          2479999999999999999999999999999999999877665544


Q ss_pred             H
Q 008788          492 M  492 (553)
Q Consensus       492 ~  492 (553)
                      .
T Consensus       118 ~  118 (124)
T d2pqrb1         118 D  118 (124)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=4.8e-05  Score=78.27  Aligned_cols=84  Identities=10%  Similarity=-0.037  Sum_probs=76.7

Q ss_pred             HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (553)
Q Consensus       397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  476 (553)
                      ....+...|..+..+++|++|+..|++|++    +.|.+           ..+|+++|.++...+++.+|+.+|.+||..
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~----l~P~~-----------~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQ----LVPSN-----------GQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTB-----------SHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCc-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            345677889999999999999999999999    78877           679999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcC
Q 008788          477 NPAHVKGLYRRGMAYMALG  495 (553)
Q Consensus       477 dp~n~ka~~r~g~a~~~lg  495 (553)
                      +|..+.|+.+++.++....
T Consensus       216 ~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         216 KFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             SBCCHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999887654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=0.0001  Score=70.47  Aligned_cols=66  Identities=9%  Similarity=-0.066  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHV-KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~-ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ++..++....++++++.|...++++|...|.+. .+|...+......++++.|++.|.+|++..|.+
T Consensus       101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~  167 (308)
T d2onda1         101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Confidence            444445555555555555555555555555432 244444555555555555555555555555543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=0.00031  Score=66.94  Aligned_cols=94  Identities=7%  Similarity=-0.067  Sum_probs=70.4

Q ss_pred             ccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHH
Q 008788          406 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLDANPAHVKGL  484 (553)
Q Consensus       406 ~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~~dp~n~ka~  484 (553)
                      +...+.++++.|...|.+|+.    ..|.+           ...+.+.|..... .++.+.|...+.+++..+|.++..+
T Consensus       142 ~~~~~~~~~~~ar~i~~~al~----~~~~~-----------~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w  206 (308)
T d2onda1         142 KFARRAEGIKSGRMIFKKARE----DARTR-----------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV  206 (308)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHT----STTCC-----------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHH
Confidence            333344555666666666655    33333           3456666655433 5789999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788          485 YRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (553)
Q Consensus       485 ~r~g~a~~~lg~~~~A~~~l~~al~l~P~~  514 (553)
                      ...+..+...|+++.|+..|++|++..|.+
T Consensus       207 ~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         207 LAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999987754

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.60  E-value=0.00023  Score=62.37  Aligned_cols=77  Identities=13%  Similarity=0.055  Sum_probs=66.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 008788          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH----------------------VKGLYRRGMAYMALGEFEEAQRDF  504 (553)
Q Consensus       447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n----------------------~ka~~r~g~a~~~lg~~~~A~~~l  504 (553)
                      ...+.+.|..+...|++.+|+..|.+||.+.+..                      ..++..++.++..+|+|++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            4577889999999999999999999999987643                      368999999999999999999999


Q ss_pred             HHHHHhCCCChHHHHHHHHH
Q 008788          505 EMMMKVDKSSEPDATAALSK  524 (553)
Q Consensus       505 ~~al~l~P~~~~~~~~~l~~  524 (553)
                      +++++++|.+.. ++..+-.
T Consensus        91 ~~al~~~P~~e~-~~~~l~~  109 (179)
T d2ff4a2          91 EALTFEHPYREP-LWTQLIT  109 (179)
T ss_dssp             HHHHHHSTTCHH-HHHHHHH
T ss_pred             HHHHHhCCccHH-HHHHHHH
Confidence            999999999854 4444443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.13  E-value=0.0024  Score=58.67  Aligned_cols=97  Identities=18%  Similarity=0.205  Sum_probs=81.2

Q ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 008788          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACNKV  473 (553)
Q Consensus       398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~~a  473 (553)
                      ++.+...|..++++++|.+|+..|++|.+    .  .+           ..++++||.+|..    ..++..|..++..+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~----~--g~-----------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a   64 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACD----L--KE-----------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   64 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----T--TC-----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----C--CC-----------HHHHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence            35677889999999999999999999987    2  22           5688999999998    67899999999998


Q ss_pred             HhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Q 008788          474 LDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKS  513 (553)
Q Consensus       474 l~~dp~n~ka~~r~g~a~~~----lg~~~~A~~~l~~al~l~P~  513 (553)
                      ...  .++.+.+.+|..+..    ..+++.|...++++.+..+.
T Consensus        65 ~~~--~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          65 CDL--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccc--cccchhhccccccccccccchhhHHHHHHHhhhhhhhhh
Confidence            775  478888999988876    56889999999999887653

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.09  E-value=0.0034  Score=51.40  Aligned_cols=83  Identities=12%  Similarity=0.034  Sum_probs=65.0

Q ss_pred             cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008788          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYR  486 (553)
Q Consensus       411 ~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~~al~~dp~n~ka~~r  486 (553)
                      ..++++|+..|++|.+    .  .+           ..+++++|.+|+.    ..++.+|+.++.++.+.  .++.|.++
T Consensus        36 ~~~~~~a~~~~~~aa~----~--g~-----------~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~   96 (133)
T d1klxa_          36 QINKQKLFQYLSKACE----L--NS-----------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLI   96 (133)
T ss_dssp             TSCHHHHHHHHHHHHH----T--TC-----------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             ccCHHHHHHHHhhhhc----c--cc-----------hhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHH
Confidence            3567777777777766    1  11           4577889988876    45789999999998875  57899999


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 008788          487 RGMAYMA----LGEFEEAQRDFEMMMKVDK  512 (553)
Q Consensus       487 ~g~a~~~----lg~~~~A~~~l~~al~l~P  512 (553)
                      +|.+|..    ..++++|+.+|++|.++..
T Consensus        97 Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          97 LGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            9999887    5689999999999988764

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.82  E-value=0.003  Score=57.96  Aligned_cols=74  Identities=14%  Similarity=0.146  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHH
Q 008788          447 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKSSEPDA  518 (553)
Q Consensus       447 ~~~~~nla~~~~k----l~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~----lg~~~~A~~~l~~al~l~P~~~~~~  518 (553)
                      ..+++|+|.+|..    .+++++|+.++.++.+.  .++.|+|++|.+|..    ..++++|+.+|++|..+...   .+
T Consensus       178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~---~A  252 (265)
T d1ouva_         178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK---GA  252 (265)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH---HH
T ss_pred             cccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH---HH
Confidence            5688999999987    67899999999999887  589999999999986    45899999999999998854   35


Q ss_pred             HHHHHHH
Q 008788          519 TAALSKL  525 (553)
Q Consensus       519 ~~~l~~l  525 (553)
                      ...|+.|
T Consensus       253 ~~~l~~l  259 (265)
T d1ouva_         253 CDILKQL  259 (265)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHHH
Confidence            5555544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.00  E-value=0.019  Score=46.60  Aligned_cols=80  Identities=14%  Similarity=0.086  Sum_probs=64.1

Q ss_pred             CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY  491 (553)
Q Consensus       412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~  491 (553)
                      .++++|+..|++|.+    ...             ..++++++.  ....++++|+.++.++.+.  .++.|.|++|..|
T Consensus         7 kd~~~A~~~~~kaa~----~g~-------------~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y   65 (133)
T d1klxa_           7 KDLKKAIQYYVKACE----LNE-------------MFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFY   65 (133)
T ss_dssp             HHHHHHHHHHHHHHH----TTC-------------TTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH----CCC-------------hhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhh
Confidence            478999999999987    221             234556653  3457899999999999875  6899999999999


Q ss_pred             HH----cCCHHHHHHHHHHHHHhCC
Q 008788          492 MA----LGEFEEAQRDFEMMMKVDK  512 (553)
Q Consensus       492 ~~----lg~~~~A~~~l~~al~l~P  512 (553)
                      ..    ..+++.|+++|+++.+...
T Consensus        66 ~~g~~~~~d~~~A~~~~~~aa~~g~   90 (133)
T d1klxa_          66 ENGKYVKKDLRKAAQYYSKACGLND   90 (133)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hhccccchhhHHHHHHHhhhhccCc
Confidence            87    5689999999999998753

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.62  E-value=0.15  Score=38.28  Aligned_cols=38  Identities=13%  Similarity=0.079  Sum_probs=33.6

Q ss_pred             hHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (553)
Q Consensus       393 e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~  430 (553)
                      ..+..|..+-.++..+-+.|+|.+|+.+|.+|+++|..
T Consensus        10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   47 (93)
T d1wfda_          10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            35667888899999999999999999999999998765

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.41  E-value=0.43  Score=34.15  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=30.7

Q ss_pred             HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (553)
Q Consensus       395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~  430 (553)
                      +..|-.+-.++..+.+.|+|++||.++++|+.+|..
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~e   40 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   40 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            445666677889999999999999999999998765

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.25  E-value=0.63  Score=33.31  Aligned_cols=38  Identities=21%  Similarity=0.279  Sum_probs=33.3

Q ss_pred             hHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (553)
Q Consensus       393 e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~  430 (553)
                      +.++.|..+-.+|..+=+.|+|.+|+.+|.+|+++|..
T Consensus         6 ~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~   43 (77)
T d1wr0a1           6 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   43 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            45677888889999999999999999999999998654