Citrus Sinensis ID: 008789
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 553 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LEW0 | 557 | Ubiquitin carboxyl-termin | yes | no | 0.987 | 0.980 | 0.595 | 0.0 | |
| A6H8I0 | 506 | Ubiquitin carboxyl-termin | yes | no | 0.886 | 0.968 | 0.370 | 4e-89 | |
| Q9UPT9 | 525 | Ubiquitin carboxyl-termin | yes | no | 0.891 | 0.939 | 0.362 | 6e-88 | |
| Q5DU02 | 525 | Ubiquitin carboxyl-termin | yes | no | 0.891 | 0.939 | 0.362 | 7e-88 | |
| P0C8Z3 | 514 | Ubiquitin carboxyl-termin | yes | no | 0.898 | 0.966 | 0.358 | 1e-87 | |
| Q6GNI6 | 523 | Ubiquitin carboxyl-termin | N/A | no | 0.904 | 0.956 | 0.352 | 3e-86 | |
| Q6DCJ1 | 523 | Ubiquitin carboxyl-termin | N/A | no | 0.904 | 0.956 | 0.352 | 4e-86 | |
| Q70EK9 | 711 | Ubiquitin carboxyl-termin | no | no | 0.902 | 0.701 | 0.367 | 2e-84 | |
| A6NNY8 | 438 | Ubiquitin carboxyl-termin | no | no | 0.743 | 0.938 | 0.379 | 4e-78 | |
| Q8CEG8 | 438 | Ubiquitin carboxyl-termin | no | no | 0.725 | 0.915 | 0.383 | 5e-78 |
| >sp|Q9LEW0|UBP22_ARATH Ubiquitin carboxyl-terminal hydrolase 22 OS=Arabidopsis thaliana GN=UBP22 PE=2 SV=1 | Back alignment and function desciption |
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Score = 635 bits (1637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/563 (59%), Positives = 410/563 (72%), Gaps = 17/563 (3%)
Query: 1 MMSRNSMYTNPKPCKHLADYKLRHGLSGYNLLQEQIRTTPSGKSSVKNHQTEIPRCCFCN 60
M +R S NP PC HL+DYKLR+G GY R + +K +IPRC +C+
Sbjct: 1 MSARISFLKNPDPCNHLSDYKLRYGTDGYKSFNNLFRCFNDARIKIKLQGIDIPRCSYCS 60
Query: 61 GYQKRLYLCLICSSISCSSHTLLHSQCENGHDIAVDIERSELYCVLCCDQVYDPDFDKIV 120
YQKRLY+CLIC SISCSSH LLH+Q GHDIA+D+ERSELYC C DQVYD +FD++V
Sbjct: 61 VYQKRLYICLICRSISCSSHILLHTQLNKGHDIAIDVERSELYCCACIDQVYDSEFDEVV 120
Query: 121 MLKHLMDLPRS-GNGVDVSAGRRSSKRRRLCSALELDLKKTKQLVSMRDLRAKSCYPLGL 179
+ K L L S +G DV A RS+K+RRL S L + + LVS RD R K +PLGL
Sbjct: 121 VSKQLFGLGMSVKSGADVVA-VRSNKKRRLDSQL---IIGSNFLVSPRDRREKWTFPLGL 176
Query: 180 RGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAV 239
RGLNNLGSTCFMN+VLQAL+HAPP RN++L+GQ N ++C +R+ LCL CD+ V FSA+
Sbjct: 177 RGLNNLGSTCFMNAVLQALVHAPPLRNFWLSGQHNRDLCPRRTMGLLCLPCDLDVIFSAM 236
Query: 240 FSGDRTPYSPAQLLYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGEC 299
FSGDRTPYSPA LLYSWWQHS NLA+YEQQD+HEFFIS+LD IHEN K++ +D EC
Sbjct: 237 FSGDRTPYSPAHLLYSWWQHSTNLATYEQQDSHEFFISLLDRIHENEGKSKCLYQDNEEC 296
Query: 300 HCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLDT--GNCPSTDLANK-SLKPSD 356
C+ H+ FSG LRSDVTC +CG TSTTYDPF+DISL LD+ G P+ N+ S PS
Sbjct: 297 QCITHKAFSGLLRSDVTCTTCGSTSTTYDPFIDISLTLDSMNGFSPADCRKNRYSGGPSV 356
Query: 357 NTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHF 416
N + TL GCLD FT+ EKLG DQK C++C E+++S KQMSI+RLPL+LCLH+KRFEH
Sbjct: 357 NAIMPTLSGCLDFFTRSEKLGPDQKLNCQSCGEKRESSKQMSIRRLPLLLCLHVKRFEHS 416
Query: 417 PVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGD-ELD------TSTEFE 469
R+ SRKID Y+Q+PF L+M+PYLSSS++ RFGNR+FAF+G+ E D S EFE
Sbjct: 417 LTRKTSRKIDSYLQYPFRLNMSPYLSSSIIGKRFGNRIFAFDGEGEYDSSSSSSPSAEFE 476
Query: 470 IFAVVTHSGTLDSGHYVTYLHLKDQWYKCDDAWITAVEEEVVRASQCYMLFYAQKMLYYK 529
IFAVVTH G L+SGHYVTYL LK WY+CDDAWI VEEEVVR +CYMLFYAQ+ + K
Sbjct: 477 IFAVVTHKGMLESGHYVTYLRLKGLWYRCDDAWINEVEEEVVRGCECYMLFYAQETVIQK 536
Query: 530 ANEDLVCQPVSPRADPFLPIAGC 552
A+++L Q +S AD F P A C
Sbjct: 537 AHKELSYQVIS-MADAF-PFADC 557
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Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2 |
| >sp|A6H8I0|UBP22_DANRE Ubiquitin carboxyl-terminal hydrolase 22 OS=Danio rerio GN=usp22 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9UPT9|UBP22_HUMAN Ubiquitin carboxyl-terminal hydrolase 22 OS=Homo sapiens GN=USP22 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q5DU02|UBP22_MOUSE Ubiquitin carboxyl-terminal hydrolase 22 OS=Mus musculus GN=Usp22 PE=2 SV=2 | Back alignment and function description |
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| >sp|P0C8Z3|UBP22_BOVIN Ubiquitin carboxyl-terminal hydrolase 22 OS=Bos taurus GN=USP22 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6GNI6|UB22A_XENLA Ubiquitin carboxyl-terminal hydrolase 22-A OS=Xenopus laevis GN=usp22-a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6DCJ1|UB22B_XENLA Ubiquitin carboxyl-terminal hydrolase 22-B OS=Xenopus laevis GN=usp22-b PE=2 SV=2 | Back alignment and function description |
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| >sp|Q70EK9|UBP51_HUMAN Ubiquitin carboxyl-terminal hydrolase 51 OS=Homo sapiens GN=USP51 PE=2 SV=1 | Back alignment and function description |
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| >sp|A6NNY8|UBP27_HUMAN Ubiquitin carboxyl-terminal hydrolase 27 OS=Homo sapiens GN=USP27X PE=2 SV=3 | Back alignment and function description |
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| >sp|Q8CEG8|UBP27_MOUSE Ubiquitin carboxyl-terminal hydrolase 27 OS=Mus musculus GN=Usp27 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 553 | ||||||
| 255548704 | 551 | Ubiquitin carboxyl-terminal hydrolase, p | 0.996 | 1.0 | 0.717 | 0.0 | |
| 225430521 | 553 | PREDICTED: ubiquitin carboxyl-terminal h | 0.998 | 0.998 | 0.684 | 0.0 | |
| 449455503 | 552 | PREDICTED: ubiquitin carboxyl-terminal h | 0.998 | 1.0 | 0.681 | 0.0 | |
| 224092623 | 519 | predicted protein [Populus trichocarpa] | 0.922 | 0.982 | 0.710 | 0.0 | |
| 296082153 | 529 | unnamed protein product [Vitis vinifera] | 0.954 | 0.998 | 0.651 | 0.0 | |
| 356552474 | 554 | PREDICTED: ubiquitin carboxyl-terminal h | 0.996 | 0.994 | 0.651 | 0.0 | |
| 224143342 | 478 | predicted protein [Populus trichocarpa] | 0.862 | 0.997 | 0.735 | 0.0 | |
| 356563930 | 555 | PREDICTED: ubiquitin carboxyl-terminal h | 0.996 | 0.992 | 0.642 | 0.0 | |
| 357437207 | 733 | Ubiquitin carboxyl-terminal hydrolase [M | 0.985 | 0.743 | 0.598 | 0.0 | |
| 11993484 | 557 | ubiquitin-specific protease 22 [Arabidop | 0.987 | 0.980 | 0.593 | 1e-179 |
| >gi|255548704|ref|XP_002515408.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] gi|223545352|gb|EEF46857.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/553 (71%), Positives = 464/553 (83%), Gaps = 2/553 (0%)
Query: 1 MMSRNSMYTNPKPCKHLADYKLRHGLSGYNLLQEQIRTTPSGKSSVKNHQTEIPRCCFCN 60
M + N +YTNPK CKHLADYKLRHGLSGY LQ ++TTPSG +SV T+IPRC FC
Sbjct: 1 MATSNPLYTNPKLCKHLADYKLRHGLSGYKFLQNCLKTTPSGITSVYKSDTKIPRCSFCK 60
Query: 61 GYQKRLYLCLICSSISCSSHTLLHSQCENGHDIAVDIERSELYCVLCCDQVYDPDFDKIV 120
GYQ R ++CLICSSISCSSHTLLH+Q EN HDIAVDIERSELYC LC DQVYDPDFDK+V
Sbjct: 61 GYQGRFFMCLICSSISCSSHTLLHAQSENSHDIAVDIERSELYCSLCSDQVYDPDFDKVV 120
Query: 121 MLKHLMDLPRSGNGVDVSAGRRSSKRRRLCSALELDLKKTKQLVSMRDLRAKSCYPLGLR 180
+ K ++D+P + + VD RRSSKRR+L S +ELDLKK+KQLV MRD R KSCYPLGLR
Sbjct: 121 VSKVMLDMPNNAHIVD-DGIRRSSKRRKLNSLMELDLKKSKQLVLMRDRREKSCYPLGLR 179
Query: 181 GLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVF 240
GLNNLGSTCFMNSVLQALLHAPPFRNYFL+ + + + CRKRS DRLCL C+I V SA++
Sbjct: 180 GLNNLGSTCFMNSVLQALLHAPPFRNYFLSDRHDRDTCRKRSLDRLCLACNIDVIISALY 239
Query: 241 SGDRTPYSPAQLLYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECH 300
SGDRTPYSPAQ LYSWWQHSANLASYEQQDAHEFFI++LDGIHE+ R+P KD G+C
Sbjct: 240 SGDRTPYSPAQFLYSWWQHSANLASYEQQDAHEFFIALLDGIHESEGNGRTPNKDNGDCQ 299
Query: 301 CVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLDTGNCPSTDLANKSLKPSDNTYV 360
C+AHRVFSG+LRSDVTCM+CG+TSTTYDP +DISL++DT + STD+ NKS++P++N
Sbjct: 300 CIAHRVFSGRLRSDVTCMTCGFTSTTYDPCVDISLDMDT-SMSSTDVPNKSVRPNENAGK 358
Query: 361 STLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVRR 420
TL CLDLFT+PEKLGSDQK +C+NC+E++DS KQMSIKRLPLVL LHIKRFEH PVR+
Sbjct: 359 CTLSACLDLFTRPEKLGSDQKLYCQNCEEKRDSFKQMSIKRLPLVLSLHIKRFEHSPVRK 418
Query: 421 MSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTL 480
+SRKID ++QFPF LDM YLSSS++R RFGNR+FAF+ DE DTS EFEIFAV+THSG L
Sbjct: 419 LSRKIDWHLQFPFSLDMTSYLSSSILRKRFGNRIFAFDSDEADTSAEFEIFAVITHSGML 478
Query: 481 DSGHYVTYLHLKDQWYKCDDAWITAVEEEVVRASQCYMLFYAQKMLYYKANEDLVCQPVS 540
+SGHYVTYL L++QWYKCDDAWIT V+E +VRASQCYM+FY QK YYKANEDL +
Sbjct: 479 ESGHYVTYLRLRNQWYKCDDAWITEVDETIVRASQCYMIFYVQKTHYYKANEDLSRTSMP 538
Query: 541 PRADPFLPIAGCC 553
R DPF+PIAGCC
Sbjct: 539 QRRDPFIPIAGCC 551
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430521|ref|XP_002283376.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449455503|ref|XP_004145492.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Cucumis sativus] gi|449515075|ref|XP_004164575.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224092623|ref|XP_002309685.1| predicted protein [Populus trichocarpa] gi|222855661|gb|EEE93208.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|296082153|emb|CBI21158.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356552474|ref|XP_003544592.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224143342|ref|XP_002324922.1| predicted protein [Populus trichocarpa] gi|222866356|gb|EEF03487.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356563930|ref|XP_003550210.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357437207|ref|XP_003588879.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355477927|gb|AES59130.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|11993484|gb|AAG42760.1|AF302670_1 ubiquitin-specific protease 22 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 553 | ||||||
| TAIR|locus:2183760 | 557 | UBP22 "ubiquitin-specific prot | 0.987 | 0.980 | 0.570 | 3.7e-167 | |
| ZFIN|ZDB-GENE-060512-211 | 506 | usp22 "ubiquitin specific pept | 0.891 | 0.974 | 0.366 | 9.1e-84 | |
| UNIPROTKB|P0C8Z3 | 514 | USP22 "Ubiquitin carboxyl-term | 0.898 | 0.966 | 0.360 | 4.5e-82 | |
| UNIPROTKB|Q9UPT9 | 525 | USP22 "Ubiquitin carboxyl-term | 0.891 | 0.939 | 0.362 | 4.5e-82 | |
| UNIPROTKB|Q70EK9 | 711 | USP51 "Ubiquitin carboxyl-term | 0.907 | 0.706 | 0.361 | 1.5e-81 | |
| MGI|MGI:2144157 | 525 | Usp22 "ubiquitin specific pept | 0.891 | 0.939 | 0.360 | 1.5e-81 | |
| RGD|1310354 | 525 | Usp22 "ubiquitin specific pept | 0.891 | 0.939 | 0.360 | 1.5e-81 | |
| UNIPROTKB|F1RTR5 | 710 | LOC100519179 "Ubiquitin carbox | 0.905 | 0.705 | 0.355 | 6.6e-81 | |
| UNIPROTKB|F1PLI6 | 471 | USP22 "Ubiquitin carboxyl-term | 0.750 | 0.881 | 0.401 | 1.1e-80 | |
| UNIPROTKB|F1PHD5 | 514 | USP51 "Ubiquitin carboxyl-term | 0.770 | 0.828 | 0.384 | 1.6e-79 |
| TAIR|locus:2183760 UBP22 "ubiquitin-specific protease 22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1626 (577.4 bits), Expect = 3.7e-167, P = 3.7e-167
Identities = 321/563 (57%), Positives = 396/563 (70%)
Query: 1 MMSRNSMYTNPKPCKHLADYKLRHGLSGYNLLQEQIRTTPSGKSSVKNHQTEIPRCCFCN 60
M +R S NP PC HL+DYKLR+G GY R + +K +IPRC +C+
Sbjct: 1 MSARISFLKNPDPCNHLSDYKLRYGTDGYKSFNNLFRCFNDARIKIKLQGIDIPRCSYCS 60
Query: 61 GYQKRLYXXXXXXXXXXXXXXXXXXQCENGHDIAVDIERSELYCVLCCDQVYDPDFDKIV 120
YQKRLY Q GHDIA+D+ERSELYC C DQVYD +FD++V
Sbjct: 61 VYQKRLYICLICRSISCSSHILLHTQLNKGHDIAIDVERSELYCCACIDQVYDSEFDEVV 120
Query: 121 MLKHLMDLPRS-GNGVDVSAGRRSSKRRRLCSALELDLKKTKQLVSMRDLRAKSCYPLGL 179
+ K L L S +G DV A R S+K+RRL S L + + LVS RD R K +PLGL
Sbjct: 121 VSKQLFGLGMSVKSGADVVAVR-SNKKRRLDSQLIIG---SNFLVSPRDRREKWTFPLGL 176
Query: 180 RGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAV 239
RGLNNLGSTCFMN+VLQAL+HAPP RN++L+GQ N ++C +R+ LCL CD+ V FSA+
Sbjct: 177 RGLNNLGSTCFMNAVLQALVHAPPLRNFWLSGQHNRDLCPRRTMGLLCLPCDLDVIFSAM 236
Query: 240 FSGDRTPYSPAQLLYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGEC 299
FSGDRTPYSPA LLYSWWQHS NLA+YEQQD+HEFFIS+LD IHEN K++ +D EC
Sbjct: 237 FSGDRTPYSPAHLLYSWWQHSTNLATYEQQDSHEFFISLLDRIHENEGKSKCLYQDNEEC 296
Query: 300 HCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLDTGN--CPSTDLANK-SLKPSD 356
C+ H+ FSG LRSDVTC +CG TSTTYDPF+DISL LD+ N P+ N+ S PS
Sbjct: 297 QCITHKAFSGLLRSDVTCTTCGSTSTTYDPFIDISLTLDSMNGFSPADCRKNRYSGGPSV 356
Query: 357 NTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHF 416
N + TL GCLD FT+ EKLG DQK C++C E+++S KQMSI+RLPL+LCLH+KRFEH
Sbjct: 357 NAIMPTLSGCLDFFTRSEKLGPDQKLNCQSCGEKRESSKQMSIRRLPLLLCLHVKRFEHS 416
Query: 417 PVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGD-ELDTST------EFE 469
R+ SRKID Y+Q+PF L+M+PYLSSS++ RFGNR+FAF+G+ E D+S+ EFE
Sbjct: 417 LTRKTSRKIDSYLQYPFRLNMSPYLSSSIIGKRFGNRIFAFDGEGEYDSSSSSSPSAEFE 476
Query: 470 IFAVVTHSGTLDSGHYVTYLHLKDQWYKCDDAWITAVEEEVVRASQCYMLFYAQKMLYYK 529
IFAVVTH G L+SGHYVTYL LK WY+CDDAWI VEEEVVR +CYMLFYAQ+ + K
Sbjct: 477 IFAVVTHKGMLESGHYVTYLRLKGLWYRCDDAWINEVEEEVVRGCECYMLFYAQETVIQK 536
Query: 530 ANEDLVCQPVSPRADPFLPIAGC 552
A+++L Q +S AD F P A C
Sbjct: 537 AHKELSYQVIS-MADAF-PFADC 557
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| ZFIN|ZDB-GENE-060512-211 usp22 "ubiquitin specific peptidase 22" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P0C8Z3 USP22 "Ubiquitin carboxyl-terminal hydrolase 22" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9UPT9 USP22 "Ubiquitin carboxyl-terminal hydrolase 22" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q70EK9 USP51 "Ubiquitin carboxyl-terminal hydrolase 51" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| MGI|MGI:2144157 Usp22 "ubiquitin specific peptidase 22" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1310354 Usp22 "ubiquitin specific peptidase 22" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RTR5 LOC100519179 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PLI6 USP22 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PHD5 USP51 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0C8Z3 | UBP22_BOVIN | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3582 | 0.8987 | 0.9669 | yes | no |
| Q9LEW0 | UBP22_ARATH | 3, ., 4, ., 1, 9, ., 1, 2 | 0.5950 | 0.9873 | 0.9802 | yes | no |
| Q9UPT9 | UBP22_HUMAN | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3627 | 0.8915 | 0.9390 | yes | no |
| Q5DU02 | UBP22_MOUSE | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3627 | 0.8915 | 0.9390 | yes | no |
| A6H8I0 | UBP22_DANRE | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3700 | 0.8860 | 0.9683 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.19 | 0.963 |
| 3rd Layer | 3.4.19.12 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 553 | |||
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 1e-134 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 3e-75 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 2e-72 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 5e-58 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 6e-57 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 7e-55 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 1e-47 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 1e-36 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 9e-36 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 8e-34 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 2e-31 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 2e-28 | |
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 1e-26 | |
| COG5077 | 1089 | COG5077, COG5077, Ubiquitin carboxyl-terminal hydr | 1e-25 | |
| COG5207 | 749 | COG5207, UBP14, Isopeptidase T [Posttranslational | 4e-25 | |
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 1e-20 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 2e-18 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 2e-18 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 3e-18 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 4e-18 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 2e-15 | |
| cd02666 | 343 | cd02666, Peptidase_C19J, A subfamily of Peptidase | 9e-09 | |
| pfam02148 | 63 | pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolas | 8e-08 | |
| cd02673 | 245 | cd02673, Peptidase_C19Q, A subfamily of Peptidase | 2e-05 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 4e-05 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 2e-04 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 4e-04 |
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
Score = 392 bits (1009), Expect = e-134
Identities = 161/344 (46%), Positives = 205/344 (59%), Gaps = 19/344 (5%)
Query: 180 RGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAV 239
RGL NLG+TCFMN +LQALLH P RNYFL+ + + + CL C + F
Sbjct: 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNS--CLSCAMDEIFQEF 58
Query: 240 F-SGDRTPYSPAQLLYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGE 298
+ SGDR+PY P LLY W+HS NLA Y QQDAHEFF +LD +H + ++ D
Sbjct: 59 YYSGDRSPYGPINLLYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESH 118
Query: 299 CHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLDTGNCPSTDLANKSLKPSDNT 358
C+C+ H+ FSG L+S VTC CG STT DPF+D+SL++ + PS L S +
Sbjct: 119 CNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNKSTPSWA-----LGESGVS 173
Query: 359 YVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPV 418
TL CLD FT+PEKLG + C C Q++ KQ+SIK+LP VLC +KRFEH +
Sbjct: 174 GTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHS-L 231
Query: 419 RRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSG 478
+ SRKID Y+QFP L+M PY SSS + + LD +++FAVV H G
Sbjct: 232 NKTSRKIDTYVQFPLELNMTPYTSSS--------IGDTQDSNSLDPDYTYDLFAVVVHKG 283
Query: 479 TLDSGHYVTYLHL-KDQWYKCDDAWITAVEEEVVRASQCYMLFY 521
TLD+GHY Y QW+K DDA IT V EE V SQ Y+LFY
Sbjct: 284 TLDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFY 327
|
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 328 |
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|216903 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other protein | Back alignment and domain information |
|---|
| >gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 553 | |||
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 100.0 | |
| KOG1865 | 545 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 100.0 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1873 | 877 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1867 | 492 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 100.0 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 100.0 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1866 | 944 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| KOG1868 | 653 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 100.0 | |
| KOG2026 | 442 | consensus Spindle pole body protein - Sad1p [Cytos | 100.0 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 100.0 | |
| COG5077 | 1089 | Ubiquitin carboxyl-terminal hydrolase [Posttransla | 100.0 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 100.0 | |
| PF00443 | 269 | UCH: Ubiquitin carboxyl-terminal hydrolase; InterP | 100.0 | |
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 100.0 | |
| KOG1870 | 842 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| cd02672 | 268 | Peptidase_C19P A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG4598 | 1203 | consensus Putative ubiquitin-specific protease [Po | 100.0 | |
| KOG1863 | 1093 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| PF13423 | 295 | UCH_1: Ubiquitin carboxyl-terminal hydrolase | 100.0 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| KOG1871 | 420 | consensus Ubiquitin-specific protease [Posttransla | 99.97 | |
| KOG1872 | 473 | consensus Ubiquitin-specific protease [Posttransla | 99.96 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 99.82 | |
| PF02148 | 63 | zf-UBP: Zn-finger in ubiquitin-hydrolases and othe | 99.71 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 99.1 | |
| smart00290 | 50 | ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like | 98.93 | |
| PF15499 | 275 | Peptidase_C98: Ubiquitin-specific peptidase-like, | 98.44 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 97.29 | |
| PF08715 | 320 | Viral_protease: Papain like viral protease; InterP | 96.93 | |
| KOG3556 | 724 | consensus Familial cylindromatosis protein [Genera | 96.51 | |
| PF05408 | 193 | Peptidase_C28: Foot-and-mouth virus L-proteinase; | 93.44 | |
| KOG1887 | 806 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 93.2 | |
| PF09416 | 152 | UPF1_Zn_bind: RNA helicase (UPF2 interacting domai | 88.77 | |
| PF05408 | 193 | Peptidase_C28: Foot-and-mouth virus L-proteinase; | 87.39 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 80.5 |
| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-78 Score=632.44 Aligned_cols=409 Identities=23% Similarity=0.381 Sum_probs=322.2
Q ss_pred ccccccCCCCCCCCccC--CCCCCeEEecccCCcccc----hhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEeCCChh
Q 008789 44 SSVKNHQTEIPRCCFCN--GYQKRLYLCLICSSISCS----SHTLLHSQCENGHDIAVDIERSELYCVLCCDQVYDPDFD 117 (553)
Q Consensus 44 ~~~~~~~~~~~~c~~C~--~~~~~~~~Cl~Cg~~~c~----~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~d~~~~ 117 (553)
.+++|..++|++.+.|. .+..|+|+||+||+++|| +||+.|+. +++|++||+++|+.||||+|+++|+|+.++
T Consensus 4 ~ti~r~~ldfd~e~~C~~~~~~~n~~~CL~cg~~~~g~~~~~ha~~H~~-~~~H~~~v~l~t~~~yc~~~~~~v~d~~l~ 82 (440)
T cd02669 4 DTINRSVLDFDFEKVCSVSLSNLNVYACLVCGKYFQGRGKGSHAYTHSL-EDNHHVFLNLETLKFYCLPDNYEIIDSSLD 82 (440)
T ss_pred hhhhhhhccccccccccccCCCCcEEEEcccCCeecCCCCCcHHHHHhh-ccCCCEEEECCCCCEEEeCCCCEEeCccHH
Confidence 46888999999877773 356788999999966554 89999998 799999999999999999999999999988
Q ss_pred hHHHHhhhhccCCCCCCCCCccccccccccccchhhhhhhhhhhhhhhccccccccCCCCcccccccCCCcchhHHHHHH
Q 008789 118 KIVMLKHLMDLPRSGNGVDVSAGRRSSKRRRLCSALELDLKKTKQLVSMRDLRAKSCYPLGLRGLNNLGSTCFMNSVLQA 197 (553)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNtCY~NsvLQ~ 197 (553)
+++... .+.++ ++... +++.+ ..+ .. ......+.||++||.|+|||||||||||+
T Consensus 83 ~i~~~~------~~~~~----------~~~i~----~~~~~--~~~--~~-~~~~~~~~~G~vGL~NlGnTCYmNsvLQ~ 137 (440)
T cd02669 83 DIKYVL------NPTYT----------KEQIS----DLDRD--PKL--SR-DLDGKPYLPGFVGLNNIKNNDYANVIIQA 137 (440)
T ss_pred HHHHHh------cCCCC----------HHHHH----Hhhhc--ccc--cc-ccCCCCccCCccCccCCCCchHHHHHHHH
Confidence 765221 11111 11000 11111 011 01 11235678999999999999999999999
Q ss_pred HhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCC--CCccChHHHHHHHHhcc-CCCCCCCcCCHHHH
Q 008789 198 LLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGD--RTPYSPAQLLYSWWQHS-ANLASYEQQDAHEF 274 (553)
Q Consensus 198 L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--~~~i~p~~~l~~l~~~~-~~f~~~~QqDA~Ef 274 (553)
|+++|+||++++...+.... .....++.++|..+++.+|++. +.+++|.+|+++++... +.|.+++||||+||
T Consensus 138 L~~~p~lr~~~l~~~~~~~~----~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~QqDA~EF 213 (440)
T cd02669 138 LSHVKPIRNFFLLYENYENI----KDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITEQSDPVEF 213 (440)
T ss_pred HHCCHHHHHHHhhccccccc----cCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcccCCHHHH
Confidence 99999999999986543211 1124479999999999999875 57899999999998765 56889999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCC---------------CccccccCceeeeccCCC
Q 008789 275 FISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCG---------------YTSTTYDPFMDISLNLDT 339 (553)
Q Consensus 275 l~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~---------------~~s~~~e~f~~LsL~i~~ 339 (553)
|.+|||.||++..... ....++|+++|+|+++++++|..|. ..+++.+||++|+|+||.
T Consensus 214 l~~LLd~L~~~l~~~~------~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~ 287 (440)
T cd02669 214 LSWLLNTLHKDLGGSK------KPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPP 287 (440)
T ss_pred HHHHHHHHHHHhccCC------CCCCCcceeccCceEEEEEEeecccccccccccccccccccceeeeccceEEEecCCC
Confidence 9999999999865431 1234799999999999999987654 245678999999999997
Q ss_pred CCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecCCc
Q 008789 340 GNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVR 419 (553)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~ 419 (553)
.+..... . .....+..+|+++|+. |.|+.|...+.++|+++|.+||+||+||||||.++ .
T Consensus 288 ~~~~~~~-~-----~~~~l~~~~l~e~L~k------------y~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~--~ 347 (440)
T cd02669 288 PPLFKDG-N-----EENIIPQVPLKQLLKK------------YDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKN--N 347 (440)
T ss_pred Ccccccc-c-----cccccCcccHHHHHHh------------cCCccceecccceEEEEEeeCCcEEEEEEecccCC--C
Confidence 5411100 0 0111134588888865 55677888888999999999999999999999987 3
Q ss_pred ccccccccccccCcc-cCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccC-CCCCeEEEEec--CCcE
Q 008789 420 RMSRKIDRYMQFPFC-LDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTL-DSGHYVTYLHL--KDQW 495 (553)
Q Consensus 420 ~~~~Ki~~~V~fP~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~-~~GHY~a~vr~--~~~W 495 (553)
....|+++.|.||.. |||++|+..+. ........|+|+|||+|.|+. ++|||+||+|+ +++|
T Consensus 348 ~~~~K~~t~V~FP~~~LDm~~y~~~~~--------------~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W 413 (440)
T cd02669 348 FFKEKNPTIVNFPIKNLDLSDYVHFDK--------------PSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKW 413 (440)
T ss_pred CccccCCCEEECCCCccchhhhhCccc--------------cccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeE
Confidence 567899999999996 89999987421 123456899999999999996 99999999986 6899
Q ss_pred EEEcCcceEEeccccccCCCceEEEEE
Q 008789 496 YKCDDAWITAVEEEVVRASQCYMLFYA 522 (553)
Q Consensus 496 ~~~nD~~V~~v~~~~v~~~~aYlLfY~ 522 (553)
|+|||+.|+++++++|+.++||||||+
T Consensus 414 ~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 414 FEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred EEEECCeeeEcCHHHhccCCceEEEeC
Confidence 999999999999999999999999996
|
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. |
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02672 Peptidase_C19P A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger | Back alignment and domain information |
|---|
| >PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein | Back alignment and domain information |
|---|
| >KOG3556 consensus Familial cylindromatosis protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation | Back alignment and domain information |
|---|
| >PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 553 | ||||
| 3m99_A | 471 | Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod | 2e-48 | ||
| 3mhh_A | 476 | Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE | 2e-48 | ||
| 4fip_A | 476 | Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- | 5e-48 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 1e-35 | ||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 6e-34 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 7e-34 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 7e-34 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 1e-33 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 5e-33 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 8e-33 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 7e-29 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 7e-29 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 8e-29 | ||
| 1nbf_A | 353 | Crystal Structure Of A Ubp-Family Deubiquitinating | 1e-13 | ||
| 2f1z_A | 522 | Crystal Structure Of Hausp Length = 522 | 6e-13 | ||
| 1nb8_A | 353 | Structure Of The Catalytic Domain Of Usp7 (Hausp) L | 9e-13 | ||
| 2ayn_A | 404 | Structure Of Usp14, A Proteasome-Associated Deubiqu | 5e-08 | ||
| 3ihp_A | 854 | Covalent Ubiquitin-Usp5 Complex Length = 854 | 5e-08 |
| >pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 | Back alignment and structure |
|
| >pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 | Back alignment and structure |
| >pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
| >pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 | Back alignment and structure |
| >pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 | Back alignment and structure |
| >pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 | Back alignment and structure |
| >pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated Deubiquitinating Enzyme Length = 404 | Back alignment and structure |
| >pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex Length = 854 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
Score = 372 bits (957), Expect = e-124
Identities = 141/536 (26%), Positives = 214/536 (39%), Gaps = 90/536 (16%)
Query: 11 PKPCKHLADYKLRHGLSGYNLLQEQIRTTPSGKSSVKNHQTEIPRCCFCNGYQ-KRLYLC 69
C H+ L S K +C C+ ++C
Sbjct: 6 MSICPHIQQVFQNEKSKDGVLKTCNAARYILNHSVPKEKFLNTMKCGTCHEINSGATFMC 65
Query: 70 LICSSISC--SSHTLLHSQCENGHDIAVDIERSELYCVLCCDQVYDPDFDKIVMLKHLMD 127
L C C SH L HS+ + GH ++ L+C C D + + D +L D
Sbjct: 66 LQCGFCGCWNHSHFLSHSK-QIGHIFGINSNNGLLFCFKCEDYIGNIDLINDAILAKYWD 124
Query: 128 LPRSGNGVDVSAGRRSSKRRRLCSALELDLKKTKQLVSMRDLRAKSCYPLGLRGLNNLGS 187
DV R GL GL N+GS
Sbjct: 125 --------DVCTKTMVPSMERR---------------------------DGLSGLINMGS 149
Query: 188 TCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRT-- 245
TCFM+S+LQ L+H P F + ++ ++ + C C + ++ T
Sbjct: 150 TCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDK--CFSCALDKIVHELYGALNTKQ 207
Query: 246 ----------PYSPAQLLYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKD 295
LL W+ + NLA Y QQDAHEF+ +++ IH++ V K+
Sbjct: 208 ASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKE 267
Query: 296 TGE-----CHCVAHRVFSGQLRSDVTCMSCGYTS-TTYDPFMDISLNLDTGNCPSTDLAN 349
C C+ H VF G L S + C C S TT DPF+D+SL++
Sbjct: 268 VSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD---------- 317
Query: 350 KSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLH 409
L CLD F K E+L D + C C QD++KQ+ I +LP VL L
Sbjct: 318 ----------KKKLYECLDSFHKKEQL-KDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQ 366
Query: 410 IKRFEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFE 469
+KRFEH +RK+D +++FP L+M Y S+ N +E
Sbjct: 367 LKRFEHLL-NGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGK--------VPDIIYE 417
Query: 470 IFAVVTHSGTLDSGHYVTYL-HLKDQWYKCDDAWITAVEEEVVRASQCYMLFYAQK 524
+ +V+H GT++ GHY+ + QW+K +D+ ++++ +E V Q Y+LFY +
Sbjct: 418 LIGIVSHKGTVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIR 473
|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Length = 109 | Back alignment and structure |
|---|
| >2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} Length = 126 | Back alignment and structure |
|---|
| >2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Length = 129 | Back alignment and structure |
|---|
| >2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Length = 374 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 553 | |||
| 3mhs_A | 476 | Ubiquitin carboxyl-terminal hydrolase 8; multi-pro | 100.0 | |
| 3ihp_A | 854 | Ubiquitin carboxyl-terminal hydrolase 5; hydrolase | 100.0 | |
| 2y6e_A | 367 | Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; | 100.0 | |
| 3nhe_A | 348 | Ubiquitin carboxyl-terminal hydrolase 2; cysteine | 100.0 | |
| 2gfo_A | 396 | Ubiquitin carboxyl-terminal hydrolase 8; protease, | 100.0 | |
| 3i3t_A | 355 | Ubiquitin carboxyl-terminal hydrolase 21; hydrolas | 100.0 | |
| 1nb8_A | 353 | Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub | 100.0 | |
| 2ayn_A | 404 | Ubiquitin carboxyl-terminal hydrolase 14; deubiqui | 100.0 | |
| 1vjv_A | 415 | Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, | 100.0 | |
| 2f1z_A | 522 | Ubiquitin carboxyl-terminal hydrolase 7; hausp, US | 100.0 | |
| 2vhf_A | 374 | Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki | 99.97 | |
| 3c5k_A | 109 | HD6, histone deacetylase 6; HDAC6, zinc finger, ac | 99.85 | |
| 2g45_A | 129 | Ubiquitin carboxyl-terminal hydrolase 5; zinc fing | 99.78 | |
| 2uzg_A | 97 | Ubiquitin carboxyl-terminal hydrolase 33; UBL conj | 99.77 | |
| 2ida_A | 102 | Hypothetical protein; zinc binding protein, struct | 99.71 | |
| 2i50_A | 126 | Ubiquitin carboxyl-terminal hydrolase 16; alpha/be | 99.69 | |
| 3mp2_A | 211 | Non-structural protein 3; papain-like protease, TG | 97.64 | |
| 2fe8_A | 315 | PP1AB, ORF1AB, replicase polyprotein 1AB; protease | 97.14 | |
| 3ihp_A | 854 | Ubiquitin carboxyl-terminal hydrolase 5; hydrolase | 89.17 | |
| 1x4w_A | 67 | Hypothetical protein FLJ13222; ZF-AN1 domain, zinc | 86.47 | |
| 1wg2_A | 64 | Zinc finger (AN1-like) family protein; riken struc | 86.42 | |
| 1wfh_A | 64 | Zinc finger (AN1-like) family protein; ZF-AN1 doma | 84.75 | |
| 1qmy_A | 167 | Protease, leader protease; hydrolase, sulfhydryl p | 83.13 |
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-82 Score=673.73 Aligned_cols=443 Identities=31% Similarity=0.591 Sum_probs=342.2
Q ss_pred CCCCcchHHHH--HhcCC---CchhhhhhhhhcCCCCcccccccCCCCCCCCccCCCC-CCeEEecccCCcccc--hhHH
Q 008789 11 PKPCKHLADYK--LRHGL---SGYNLLQEQIRTTPSGKSSVKNHQTEIPRCCFCNGYQ-KRLYLCLICSSISCS--SHTL 82 (553)
Q Consensus 11 ~~~C~H~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~C~~~~-~~~~~Cl~Cg~~~c~--~h~~ 82 (553)
+++|||+.+++ .+... +++..++-.+...+ .+......+.|..|.... .++|+||+||++||| +||+
T Consensus 6 ~~~C~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~C~~c~~~~~~~~~~cl~cg~~~c~~~~h~~ 80 (476)
T 3mhs_A 6 MSICPHIQQVFQNEKSKDGVLKTCNAARYILNHSV-----PKEKFLNTMKCGTCHEINSGATFMCLQCGFCGCWNHSHFL 80 (476)
T ss_dssp CCCCHHHHHHTTSHHHHHHHHHHHHHHHHHHHSSC-----HHHHHHHHSBCTTTCCBCSSSEEEESSSSCEEETTTTHHH
T ss_pred ccCCcCHHHHhcchhhHHHHHHHhHHHHHhhccCc-----hhhcccCCCCcccccCCCCCCceEeCCCCCCccCCchHHH
Confidence 37999999984 22222 22222222222111 111112234699996544 799999999999997 8999
Q ss_pred hhhcCCCCCeEEEECCCCcEEEcCCCCEEeCCChhhHHHHhhhhccCCCCCCCCCccccccccccccchhhhhhhhhhhh
Q 008789 83 LHSQCENGHDIAVDIERSELYCVLCCDQVYDPDFDKIVMLKHLMDLPRSGNGVDVSAGRRSSKRRRLCSALELDLKKTKQ 162 (553)
Q Consensus 83 ~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~e~~~~~~~~ 162 (553)
.|+. +++|+++|+++++++|||+|+++|+|+++.+.. .+. +. |..
T Consensus 81 ~H~~-~~~h~~~~~~~~~~~~c~~~~~~v~d~~l~~~~---~~~------------------~~----------~~~--- 125 (476)
T 3mhs_A 81 SHSK-QIGHIFGINSNNGLLFCFKCEDYIGNIDLINDA---ILA------------------KY----------WDD--- 125 (476)
T ss_dssp HHHH-HHCCCEEEETTTCCEEETTTTEEECSCHHHHTG---GGG------------------GG----------HHH---
T ss_pred HHhc-ccCCcEEEECCCCcEEeCCCCCCcccHHHHHHH---Hhh------------------hc----------cch---
Confidence 9998 799999999999999999999999998853211 000 00 000
Q ss_pred hhhccccccccCCCCcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcC
Q 008789 163 LVSMRDLRAKSCYPLGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSG 242 (553)
Q Consensus 163 ~~~~~~~~~~~~~~~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~ 242 (553)
...........+.+|++||.|+|||||||||||+|+++|+|+++++...+.. .+. ...+..++.++|..+|..+++.
T Consensus 126 -~~~~~~~~~~~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~-~~~-~~~~~~~l~~~l~~l~~~l~~~ 202 (476)
T 3mhs_A 126 -VCTKTMVPSMERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSN-NCK-VRSPDKCFSCALDKIVHELYGA 202 (476)
T ss_dssp -HHHHEECCCGGGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHH-HCS-SCCTTTCHHHHHHHHHHHHHSC
T ss_pred -hhhcccCCCccCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhh-hcc-CCCcccchHHHHHHHHHHHhhc
Confidence 0000111224567899999999999999999999999999999998643321 111 2345678999999999999974
Q ss_pred CCC---------ccChHH---HHHHHHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCC-----CCCCCCCcccccee
Q 008789 243 DRT---------PYSPAQ---LLYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARS-----PIKDTGECHCVAHR 305 (553)
Q Consensus 243 ~~~---------~i~p~~---~l~~l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~-----~~~~~~~~~~~i~~ 305 (553)
... .+.|.. ++..+|+..+.|.+++||||+|||.+||+.|+++...... .........++|++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~ 282 (476)
T 3mhs_A 203 LNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHT 282 (476)
T ss_dssp CCC--------CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHH
T ss_pred ccccccccccccccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCccee
Confidence 321 344554 5556678999999999999999999999999986432111 11122334578999
Q ss_pred eeeEEEeeEEEeCCCCCccc-cccCceeeeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccc
Q 008789 306 VFSGQLRSDVTCMSCGYTST-TYDPFMDISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFC 384 (553)
Q Consensus 306 ~F~g~l~~~i~C~~C~~~s~-~~e~f~~LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C 384 (553)
+|+|++.++++|..|+.++. +.++|++|+|+||... +|+++|+.|+.+|.+++. .|.|
T Consensus 283 ~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~~--------------------sl~~~L~~~~~~E~l~~~-~~~C 341 (476)
T 3mhs_A 283 VFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKK--------------------KLYECLDSFHKKEQLKDF-NYHC 341 (476)
T ss_dssp HSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTTCC--------------------BHHHHHHHHHCCEECSSC-CCEE
T ss_pred ecceEEEEEEEECCCCCeeCCcccchhhhccchhhhh--------------------HHHHHHHHhcChhhccCC-CCcC
Confidence 99999999999999999974 5899999999998654 999999999999999864 4999
Q ss_pred cccccccceeEEEEeecCCceEEEEEeeeeecCCcccccccccccccCcccCCCccccccccccccCCcccccCCCCCCC
Q 008789 385 ENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDT 464 (553)
Q Consensus 385 ~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (553)
++|+.++.++|+.+|.++|+||+|||+||.++. .+...|+++.|.||+.|||++|+........ .......
T Consensus 342 ~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~-~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~--------~~~~~~~ 412 (476)
T 3mhs_A 342 GECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLL-NGSNRKLDDFIEFPTYLNMKNYCSTKEKDKH--------SENGKVP 412 (476)
T ss_dssp TTTTEECCCEEEEEEEEBCSEEEEEECCEEECT-TSCEEECCCCCBCCSEEECGGGBSCCBCCC----------CCCBCC
T ss_pred CccCCcccEEEEEEcccCCcceEEEeeeccccC-CCCeEECCEEEcCCCeeechhhcCccccccc--------ccccCCC
Confidence 999999999999999999999999999999874 4668899999999999999999976432110 0112345
Q ss_pred CceEEEEEEEEeeccCCCCCeEEEEec-CCcEEEEcCcceEEeccccccCCCceEEEEEEecc
Q 008789 465 STEFEIFAVVTHSGTLDSGHYVTYLHL-KDQWYKCDDAWITAVEEEVVRASQCYMLFYAQKML 526 (553)
Q Consensus 465 ~~~Y~L~avV~H~G~~~~GHY~a~vr~-~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~r~~~ 526 (553)
...|+|+|||+|.|++++|||++|+|. +++||+|||+.|+++++++|...+||||||+|+++
T Consensus 413 ~~~Y~L~avv~H~G~~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~ 475 (476)
T 3mhs_A 413 DIIYELIGIVSHKGTVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQV 475 (476)
T ss_dssp CEEEEEEEEEEEEECSSSEEEEEEEECTTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEEE
T ss_pred CCcEEEEEEEEeCCCCCCCceEEEEECCCCcEEEEeCCceEECCHHHhccCCcEEEEEEEecC
Confidence 678999999999999999999999997 78999999999999999999999999999999875
|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} | Back alignment and structure |
|---|
| >3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A | Back alignment and structure |
|---|
| >2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A | Back alignment and structure |
|---|
| >2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5 | Back alignment and structure |
|---|
| >2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} | Back alignment and structure |
|---|
| >2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A* | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 | Back alignment and structure |
|---|
| >1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 | Back alignment and structure |
|---|
| >1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 553 | ||||
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 5e-56 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 7e-53 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 4e-42 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 6e-36 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 4e-31 | |
| d2uzga1 | 95 | g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hy | 2e-05 | |
| d2g45a1 | 113 | g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal h | 1e-04 |
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 189 bits (481), Expect = 5e-56
Identities = 99/368 (26%), Positives = 166/368 (45%), Gaps = 60/368 (16%)
Query: 178 GLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRL-CLLCDIYVFF 236
L GL NLG+TC+MNS+LQ L +AP +YF ++ R + + +
Sbjct: 14 ALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIM 73
Query: 237 SAVFSGDRTPYSPAQLLYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDT 296
A+++G SP + + + A Y QQD+ E + ++DG+HE+ KA + +
Sbjct: 74 KALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYK 133
Query: 297 GE---------------------CHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISL 335
E + +F GQ +S V C++C S T++ FM +SL
Sbjct: 134 EENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSL 193
Query: 336 NLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVK 395
L + + TL CL LF+K EKL + +F+C +C+ R+DS+K
Sbjct: 194 PLASTSKC------------------TLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLK 235
Query: 396 QMSIKRLPLVLCLHIKRFEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMF 455
++ I +LP VL +H+KRF + + + LD++ Y+
Sbjct: 236 KIEIWKLPPVLLVHLKRFSYDGRWKQ-KLQTSVDFPLENLDLSQYVIGPK---------- 284
Query: 456 AFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYL--HLKDQWYKCDDAWITAVEEEVVRA 513
+ ++ +F+V H G LD GHY Y + +W+K DD ++ + V++
Sbjct: 285 -------NNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKS 337
Query: 514 SQCYMLFY 521
S Y+LFY
Sbjct: 338 SAAYILFY 345
|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
| >d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 553 | |||
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d2gfoa1 | 348 | Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho | 100.0 | |
| d2hd5a1 | 336 | Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 100.0 | |
| d2g45a1 | 113 | Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Hum | 99.78 | |
| d2uzga1 | 95 | Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {H | 99.74 | |
| d2idaa1 | 102 | Hypothetical protein RPA1320 {Rhodopseudomonas pal | 99.62 | |
| d1wffa_ | 85 | ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus | 80.59 |
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-59 Score=476.68 Aligned_cols=298 Identities=25% Similarity=0.422 Sum_probs=258.1
Q ss_pred CCcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHHH
Q 008789 176 PLGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYS 255 (553)
Q Consensus 176 ~~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~ 255 (553)
.+|++||.|+||||||||+||+|+++|+|+++++...... .....++.++|..+|..|+... .++.|..++..
T Consensus 3 ~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~~~~~ 75 (347)
T d1nbfa_ 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS 75 (347)
T ss_dssp SSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTT------CCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHH
T ss_pred CCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccC------CcccchHHHHHHHHHHHHhcCC-CCcChHHHHHh
Confidence 5799999999999999999999999999999998654332 2234578999999999998765 47889998887
Q ss_pred HHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeec
Q 008789 256 WWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISL 335 (553)
Q Consensus 256 l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL 335 (553)
+. .+.|..+.||||+|||.+||+.|+++....... +.+.++|.|.+.+.++|..|++.+.+.++|+.|+|
T Consensus 76 ~~--~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~~~--------~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~L 145 (347)
T d1nbfa_ 76 FG--WETLDSFMQHDVQELCRVLLDNVENKMKGTCVE--------GTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQL 145 (347)
T ss_dssp TT--CCGGGGGSCBCHHHHHHHHHHHHHHHHTTSTTT--------THHHHHHCEEEEEEEEESSSCCEEEEEEEESSEEE
T ss_pred hc--hhhcchHHHHHHHHHHHHHHHHHHHHHhhcccc--------ccccceeceEEEEeEEeCCccceeeeecccccccc
Confidence 73 345888999999999999999999876543322 57899999999999999999999999999999999
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeee
Q 008789 336 NLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEH 415 (553)
Q Consensus 336 ~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~ 415 (553)
+++... ++.++|..++..|.+++++.+.|..| +...+.|+..|.++|++|+|||+||.+
T Consensus 146 ~i~~~~--------------------~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k~~~i~~lP~vL~i~l~Rf~~ 204 (347)
T d1nbfa_ 146 SIKGKK--------------------NIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEKGVKFLTLPPVLHLQLMRFMY 204 (347)
T ss_dssp ECTTCC--------------------BHHHHHHHHTCCEEECGGGCEECSTT-CEECEEEEEEEEECCSEEEEEEECEEE
T ss_pred cccccc--------------------chhhhHHhhcchheeccccccccccC-cceeccEEEEEEecCChheEeeeeeee
Confidence 998755 89999999999999998876666655 567789999999999999999999999
Q ss_pred cCCcccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccCCCCCeEEEEec--CC
Q 008789 416 FPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLHL--KD 493 (553)
Q Consensus 416 ~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~--~~ 493 (553)
+.......|+++.|.||+.|||++|+... .......|+|+|||+|.|+.++|||+||+|. ++
T Consensus 205 ~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~----------------~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~ 268 (347)
T d1nbfa_ 205 DPQTDQNIKINDRFEFPEQLPLDEFLQKT----------------DPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDG 268 (347)
T ss_dssp ETTTTEEEECCCCCBCCSEEECGGGBSSC----------------CTTSCCEEEEEEEEEEEEETTEEEEEEEECTTSSS
T ss_pred ccccCcccccCceEeeeeeeccccccccc----------------cccCccceeeEEEEEecCCCCCCEEEEeeecCCCC
Confidence 87667788999999999999999998753 3345678999999999999999999999985 56
Q ss_pred cEEEEcCcceEEeccccccC---------------CCceEEEEEEeccc
Q 008789 494 QWYKCDDAWITAVEEEVVRA---------------SQCYMLFYAQKMLY 527 (553)
Q Consensus 494 ~W~~~nD~~V~~v~~~~v~~---------------~~aYlLfY~r~~~~ 527 (553)
+||+|||+.|+++++++|+. .+||||||+|++..
T Consensus 269 ~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~~~~ 317 (347)
T d1nbfa_ 269 KWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKL 317 (347)
T ss_dssp CCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEGGGH
T ss_pred EEEEEECCceEECCHHHHHHhhcCCCccccccCCCCCEEEEEEEecCch
Confidence 99999999999999999963 36999999998753
|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
| >d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|