Citrus Sinensis ID: 008790

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550---
Protein Sequence
MDTEKPSSSKKKKKTIEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHcccccEEEEEccccccccccccccccEEEccccccccccccccccccccEEEEEccccccEEEEEEcccccccccccccccHHHHcccccccccHHHHHHHcccccccccccccEEEEEEccccccHHHHHHHHHHHcccccEEccccccccccccccccccccccccEEccEEEEEEccccccccccccEEEEEEEccccccccccEEEEEEEEcccccccEEEcccccccccccHHHHHHcccHHHcccccccEEEEEEccccccccccccEEEEEEEEcccccccccEEEEEccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEEccccccccccccccHHHHHHHcccccEEcccccccccccccccccccccccccccccEEEEEcEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHccccccEEEEEcccEEEccccccccEEEEEccccccccccccHHHccccEEEEEEEEccccEEEEEEEcccccccccccccccHHHcccccccHHHHHHHHHHHHHcccccccccEEEEEEccccccHHHHHHcccccccccEEEEccccccEEEccccccccccccccccccEEEEEEEcccccccccccEEEEEEEEcccccccccEEEEEEEEEcccccEEEEEccccccccccHHHHHHHHcHHHHHHccccEEEEEEEHHHHccccccccHHHHEEEEccccccccEEEEEccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccEEEEEEEccccccccccccccccHHHHHHcccccEEEEEEccccccccEcccccccccccccccEEEEEEEEEEEEEEccccccc
Coil and Loop (DISEMBL)
mdtekpssskkkkktieisSLADCEDVLHNILsrlpaksfasAACVNKSWncvcnsilsrpriasacsfkasaPIALQEVLDKVllepirphfaianvgrgfnMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFRevkfqdhedigvnrgictcgqqsgivltvgylpglkvdaipllrrkeivqvpvddtyvdvylappvpmidQFVMDIQNyttsvsgcaspvgiimfgkedmdqkpiIEKLDYAMSMNTVFvgdersrfayrsgddlrnvcgnpafISDAVALVFasdkdkphgtgeIQFHLAMSegvsaigprhkaVSVRAnhaegstwltakreghhvilDGEQILRHIDQLENRFPQVELYVGVTkrrkcsigsekSRLITTLAFhgirggdqeylyvdgvgiktgdyfqfyqpDHNAALAACRNASENirnlklnssgkgflgrrdvansidrkeVLGGFIFsccgrgnsffgglnvdsfpffenfpsaplagifcggeigrgklsmtgqesqeespaerrYLHVYSTAYLVISYSAAPSE
Flexible Loop (DISEMBL)
mdtekpssskkkkktieisslaDCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFaianvgrgfnMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLenrfpqvelyvgvtkrrkcsigseksrlITTLafhgirggdQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRnlklnssgkgflgrrDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE
Low Complexity Region (SEG)
MDtekpssskkkkktieissLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE
Disordered region (IsUnstruct)
********************LADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDK****GTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGR******************RYLHVYSTAYLVISY******
Disordered Region (DISOPRED)
*********************ADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVF******************VCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQIL**********PQVELYVGVTKR**********RLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSG****************EVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQ*****SPAERRYLHVYSTAYLVI*YS*****
Disordered Region (DISEMBL)
****************EISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKL*************ERRYLHVYSTAYLVISYSAAPSE
Disordered Region (DISPRO)
**************TIEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTEKPSSSKKKKKTIEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	553	2.2.26 [Sep-21-2011]
Q9FMV0	529	F-box/LRR-repeat protein	yes	no	0.915	0.956	0.435	1e-113

>sp|Q9FMV0|FBL91_ARATH F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana GN=At5g63520 PE=2 SV=1

 Score =  410 bits (1054), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/562 (43%), Positives = 330/562 (58%), Gaps = 56/562 (9%)

Query: 1   MDTEKPSSSKKKKKT-----IEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCN 55
           M T+  S + KK KT     + I+++   ED+LHNIL RLPAKSFA A+CVN+ W+ VCN
Sbjct: 11  MTTKGKSENSKKMKTDMADMVPIAAMN--EDLLHNILLRLPAKSFAFASCVNRFWSSVCN 68

Query: 56  SILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHL 115
            ILSRP++ SA S       A +EVLDKVL EPIRP F IAN+  G NM  TL  + + +
Sbjct: 69  RILSRPKMISAFSRNPDQLRAGEEVLDKVLSEPIRPQFVIANITCG-NMEETLTLITERV 127

Query: 116 GLRTPIILSVVHGVMGRDALTDEFREVKFQ---DHEDIGVNRGICTCGQQSGIVLTVGYL 172
           G R PII+SVV G++G++A  D+  EV+     D E   V            I+LT+GYL
Sbjct: 128 GSRVPIIVSVVTGILGKEACNDKAGEVRLHSTSDDELFDV--------ANFAILLTIGYL 179

Query: 173 PGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSG-CASPVG 231
           PG+KVD IP+++ K                     M D+FVMDI+NY + VSG  A+P  
Sbjct: 180 PGMKVDIIPVIQAKG---------------ESGAEMEDKFVMDIRNYMSMVSGHAAAPAC 224

Query: 232 IIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVAL 291
           +I+F ++    +P++ KLDYAM   TV VG +   F ++ G++ RNV      I     L
Sbjct: 225 LILFAEDTHATEPVLHKLDYAMPAETVIVGGQIGEFLHKRGNEPRNVQLQKDDIRVLAGL 284

Query: 292 VFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--STWLTAKREGHHVI 349
           +FA D+ +P     IQF  A+S G+S++  R+KA +V  +      ST LTAKR G   +
Sbjct: 285 IFARDRHRPAQAERIQFDTAISNGMSSVDLRYKAANVNVSLGPSCPSTLLTAKRRGEAEV 344

Query: 350 LDGEQILRHIDQ-LENRFPQVELYVGVTKRRKCSIG-SEKSRLITTLAFHGIRGGDQEYL 407
           LDG+QIL  ID  LEN   + + Y+GV KRRK SIG  EK +++++L FH + G D + L
Sbjct: 345 LDGDQILDDIDNILENYIWENDSYLGVIKRRKYSIGLEEKPKIMSSLVFHQVNGSDDQDL 404

Query: 408 YVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKE 467
            VDG GIKTGD FQ Y PD   A AA  + S  +RNLK               +  ++ E
Sbjct: 405 LVDGAGIKTGDQFQVYLPDLKVAEAALNDVSAQLRNLK---------------SKPNKPE 449

Query: 468 VLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEE 527
           V+GGF F    RG+SFFG  N DS PF ENFP  P  GIFC GEIGR  +   G+E +E 
Sbjct: 450 VVGGFAFVGSCRGDSFFGCPNADSSPFLENFPELPFGGIFCDGEIGRSLILEEGEEKKEV 509

Query: 528 SPAERRYLHVYSTAYLVISYSA 549
           S   +R+LHVYS+ YL++SY++
Sbjct: 510 SI--QRFLHVYSSVYLIVSYTS 529

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	553
224136205	533	f-box family protein [Populus trichocarp	0.942	0.977	0.546	1e-163
359491092	527	PREDICTED: F-box/LRR-repeat protein At5g	0.920	0.965	0.542	1e-157
147863571	527	hypothetical protein VITISV_019403 [Viti	0.920	0.965	0.540	1e-156
224122060	551	predicted protein [Populus trichocarpa]	0.936	0.940	0.525	1e-155
255540189	523	conserved hypothetical protein [Ricinus	0.924	0.977	0.525	1e-150
118488987	533	unknown [Populus trichocarpa x Populus d	0.940	0.975	0.516	1e-146
224118086	530	predicted protein [Populus trichocarpa]	0.940	0.981	0.518	1e-146
224115878	558	predicted protein [Populus trichocarpa]	0.922	0.913	0.5	1e-140
356516535	540	PREDICTED: F-box/LRR-repeat protein At5g	0.902	0.924	0.501	1e-137
224115874	637	predicted protein [Populus trichocarpa]	0.835	0.725	0.522	1e-132

>gi|224136205|ref|XP_002322271.1| f-box family protein [Populus trichocarpa] gi|222869267|gb|EEF06398.1| f-box family protein [Populus trichocarpa]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 301/551 (54%), Positives = 389/551 (70%), Gaps = 30/551 (5%)

Query: 4   EKPSSSKKKKKTIEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRI 63
           EKP    K+ KT   S  +  ED++ NIL RLPA SFASAACV+KSWN +CN IL +P+ 
Sbjct: 7   EKP----KEPKTPMTSFASINEDLILNILKRLPALSFASAACVSKSWNQICNQILYKPKF 62

Query: 64  ASACSFKASAPIALQEVLDKVLLEPIRPHFAIANV-GRGFNMRRTLDFLVKHLGLRTPII 122
           ASA S      +AL+EV++KVL EPIRPHFAIANV G G ++   L+FL   LG +TPII
Sbjct: 63  ASAFSLNPDEKVALEEVVNKVLSEPIRPHFAIANVIGSGVDLSERLNFLATKLGFQTPII 122

Query: 123 LSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPL 182
           +S   G+MGRDA+TDE REV  +++   G +         +GI+LTVG+LPGLKVDAIPL
Sbjct: 123 VSCTSGIMGRDAVTDEHREVMLEEYWVDGESNPC------NGIILTVGFLPGLKVDAIPL 176

Query: 183 LRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQ 242
            + ++  +                 M+D FVMDI++Y TS+SGCASPVGIIMFG ED DQ
Sbjct: 177 FQPRKGCRAT---------------MVDNFVMDIKDYATSISGCASPVGIIMFGDEDADQ 221

Query: 243 KPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHG 302
           KP++EKLD+AMS +T+ +GDER++F YR+G + RN   +  + S AVALVFA D+DKP G
Sbjct: 222 KPVMEKLDHAMSSDTIIIGDERAQFLYRNGVESRNDYESSEYFSAAVALVFARDRDKPCG 281

Query: 303 TGEIQFHLAMSEGVSAIGPRHKAVSVR--ANHAEGSTWLTAKREGHHVILDGEQILRHID 360
           TGEIQFH A+S GVSA+GPR+KAVSV+   +    +TWLTA+REG H I DG++IL  I+
Sbjct: 282 TGEIQFHAALSSGVSAVGPRYKAVSVKKIVSGTGHTTWLTARREGEHEIQDGQRILDDIN 341

Query: 361 -QLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDY 419
            +L N+    +LY+GVT++R+C IGS+KSR++T L FHG+ GGDQEYL+ DGVGI+TGDY
Sbjct: 342 NELVNQVGHPDLYIGVTEQRRCFIGSQKSRVMTFLVFHGVMGGDQEYLFADGVGIRTGDY 401

Query: 420 FQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGR 479
           FQFY PD +AAL++C N S+N RNL L+ S +  L  R V +++  KE++GGF+FSCCGR
Sbjct: 402 FQFYHPDPSAALSSCSNVSKNFRNLNLDWSSRNCLHARGVYDNVCNKELVGGFVFSCCGR 461

Query: 480 GNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYS 539
           G SFF   NVDS PF +NFP  P+AGIFC GEIGRG       E QEE  +    LHVYS
Sbjct: 462 GESFFERCNVDSSPFLDNFPGFPMAGIFCRGEIGRGFSVFNADEGQEERTS-HCCLHVYS 520

Query: 540 TAYLVISYSAA 550
             YL++SY+ A
Sbjct: 521 AVYLLVSYTPA 531

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491092|ref|XP_002283895.2| PREDICTED: F-box/LRR-repeat protein At5g63520-like [Vitis vinifera] gi|297734433|emb|CBI15680.3| unnamed protein product [Vitis vinifera]

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 289/533 (54%), Positives = 363/533 (68%), Gaps = 24/533 (4%)

Query: 25  EDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKV 84
           ED+L NILSRLPA SFA+A CV++SW      +LSRP++ASA S   S   A++EVLD V
Sbjct: 14  EDLLQNILSRLPALSFANAGCVSRSWRRAAGDVLSRPKLASAISLNPSFQDAVKEVLDSV 73

Query: 85  LLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKF 144
           L  PIRPHFAIA +G  F++ RT   + K LG  TP+I SV  G++G DA+T+EF+EVK+
Sbjct: 74  LSRPIRPHFAIACIGLKFSLERTHKLITKKLGSATPVITSVARGIIGSDAITEEFKEVKW 133

Query: 145 Q-DHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLA 203
             D ED  +        +  GIVL VG++PGLKVDAIPLLR  E                
Sbjct: 134 GVDVEDFNL-----PANKDRGIVLIVGFMPGLKVDAIPLLRELE---------------E 173

Query: 204 PPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDE 263
           P + +ID+FVMDI+N++ +VSGC SP GI+MFG +  D KP++EK+DYAMSM TV +G+E
Sbjct: 174 PGISLIDKFVMDIRNFSAAVSGCTSPTGIVMFGDKHADMKPVLEKMDYAMSMETVILGEE 233

Query: 264 RSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRH 323
              F YRSGDD RN+ G+     D VALVFA D DKP G GE QFH+A+S GV  +GP H
Sbjct: 234 SGHFMYRSGDDSRNISGSLKNSCDGVALVFARDNDKPQGVGETQFHVALSTGVVPVGPTH 293

Query: 324 KA--VSVRANHAEGSTWLTAKREGHHVILDGEQILRHI-DQLENRFPQVELYVGVTKRRK 380
           KA  V V+ + +E STWLTA++EG    LDGE++L  I D++EN     +LY+GVTKRRK
Sbjct: 294 KAASVKVKGDGSERSTWLTARKEGLKEALDGERLLHDIYDEMENENASHDLYIGVTKRRK 353

Query: 381 CSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASEN 440
           CSIGSEK R +TTL FH + GGD+EYL+VDGVGIKTGD F+FY+ D + AL++CR+ SE 
Sbjct: 354 CSIGSEKVRWVTTLEFHDVLGGDEEYLFVDGVGIKTGDPFRFYRSDSDTALSSCRHVSEE 413

Query: 441 IRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPS 500
            RNLK   + K     R VA+  D+ EV GG IFSC GRG+SFFG  NVDS PF ENFP 
Sbjct: 414 FRNLKQAWTHKNSYHFRGVADGGDKTEVCGGIIFSCYGRGDSFFGQANVDSSPFLENFPG 473

Query: 501 APLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE 553
            PLAGI CGGEIGR  LS    +  +E  + R YLH YST YLVIS++ +  E
Sbjct: 474 FPLAGIMCGGEIGRVHLSSADHQGGQEESSPRSYLHYYSTVYLVISHTPSSLE 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147863571|emb|CAN79767.1| hypothetical protein VITISV_019403 [Vitis vinifera]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 288/533 (54%), Positives = 362/533 (67%), Gaps = 24/533 (4%)

Query: 25  EDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKV 84
           ED+L NILSRLPA SFA+A CV++SW      +LSRP++ASA S   S   A++EVLD V
Sbjct: 14  EDLLQNILSRLPALSFANAGCVSRSWRRAAGDVLSRPKLASAISLNPSFQDAVKEVLDSV 73

Query: 85  LLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKF 144
           L  PIRPHFAIA +G  F++ RT   + K LG  TP+I SV  G++G DA+T+EF+EVK+
Sbjct: 74  LSRPIRPHFAIACIGLKFSLERTHKLITKKLGSATPVITSVARGIIGSDAITEEFKEVKW 133

Query: 145 Q-DHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLA 203
             D ED  +        +  GIVL VG++PGLKVDAIPLLR  E                
Sbjct: 134 GVDVEDFNL-----PANKDRGIVLIVGFMPGLKVDAIPLLRELE---------------E 173

Query: 204 PPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDE 263
           P + +ID+FVMDI+N++ +VSGC SP GI+MFG +  D KP++EK+DYAMSM TV +G+E
Sbjct: 174 PGISLIDKFVMDIRNFSAAVSGCTSPTGIVMFGDKHADMKPVLEKMDYAMSMETVILGEE 233

Query: 264 RSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRH 323
              F YRSGDD RN+ G+     D VALVFA D DKP G GE QFH+A+S GV  +GP  
Sbjct: 234 SGHFMYRSGDDSRNISGSLKNSCDGVALVFARDNDKPQGVGESQFHVALSTGVVPVGPTL 293

Query: 324 KA--VSVRANHAEGSTWLTAKREGHHVILDGEQILRHI-DQLENRFPQVELYVGVTKRRK 380
           KA  V V+ + +E STWLTA++EG    LDGE++L  I D++EN     +LY+GVTKRRK
Sbjct: 294 KAASVKVKGDGSERSTWLTARKEGLKEALDGERLLHDIYDEMENENASHDLYIGVTKRRK 353

Query: 381 CSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASEN 440
           CSIGSEK R +TTL FH + GGD+EYL+VDGVGIKTGD F+FY+ D + AL++CR+ SE 
Sbjct: 354 CSIGSEKVRWVTTLEFHDVLGGDEEYLFVDGVGIKTGDPFRFYRSDSDTALSSCRHVSEE 413

Query: 441 IRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPS 500
            RNLK   + K     R VA+  D+ EV GG IFSC GRG+SFFG  NVDS PF ENFP 
Sbjct: 414 FRNLKQAWTHKNSYHFRGVADGGDKTEVCGGIIFSCYGRGDSFFGQANVDSSPFLENFPG 473

Query: 501 APLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE 553
            PLAGI CGGEIGR  LS    +  +E  + R YLH YST YLVIS++ +  E
Sbjct: 474 FPLAGIMCGGEIGRVHLSSADHQGGQEESSPRSYLHYYSTVYLVISHTPSSLE 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122060|ref|XP_002318743.1| predicted protein [Populus trichocarpa] gi|222859416|gb|EEE96963.1| predicted protein [Populus trichocarpa]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 301/573 (52%), Positives = 391/573 (68%), Gaps = 55/573 (9%)

Query: 10  KKKKKTIEISSLADC-EDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACS 68
           K K+  + ++S A   ED++ NI+ RLPA SFASAACV+KSWN +CN ILS+P+ ASA S
Sbjct: 4   KPKEPKMPMTSFASINEDLVQNIVKRLPASSFASAACVSKSWNQICNQILSKPKFASAFS 63

Query: 69  FKASAPIALQEVLDKVLLEPIRPHFAIANV-GRGFNMRRTLDFLVKHLGLRTPIILSVVH 127
              +  +AL+EV++KVL EPIRPHFAIANV G G ++R  LDFL   LG +TPII+S   
Sbjct: 64  LNPNEKVALEEVVNKVLSEPIRPHFAIANVIGSGVDLREKLDFLATKLGSQTPIIVSCAS 123

Query: 128 GVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKE 187
           G+MGRDA+T E REV  +++   G +    +C    GI+LTVG+LPGLKVD IPLL+ ++
Sbjct: 124 GIMGRDAVTGEHREVMLEEYWADGES---ISC---FGIILTVGFLPGLKVDVIPLLQPRK 177

Query: 188 IVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIE 247
            V  P               ++D FVM+I++Y  SVSG ASP GII+FG E  DQKP++E
Sbjct: 178 -VHRPA--------------LVDYFVMNIRDYAASVSGWASPAGIILFGDEGADQKPVME 222

Query: 248 KLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHG----- 302
           KLD+AMS +TV VGDER++F YRSG + RN  G+  +   AVALVFA D+DKP G     
Sbjct: 223 KLDHAMSRDTVIVGDERAQFLYRSGVESRNDYGSSEYFPAAVALVFARDRDKPCGIGLLI 282

Query: 303 ----------------TGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--STWLTAKRE 344
                           TGEIQFH A+S GVSAIGPR+KAVSVR   +E   +T LTA+RE
Sbjct: 283 SVFAISSFATKMDWQCTGEIQFHAALSSGVSAIGPRYKAVSVRKIGSETGCTTLLTARRE 342

Query: 345 GHHVILDGEQILRHID-QLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGD 403
           G   I DG++IL  I+ +L N+  + +LY+GVT++RKC IGSEKSR++T L FHG+ GGD
Sbjct: 343 GEQEIQDGQRILDDINNELVNQIGRPDLYIGVTEQRKCFIGSEKSRVMTFLVFHGVMGGD 402

Query: 404 QEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSI 463
           QEYL+ DGVGI+TGDYFQFY  D   AL++C   S+N R LKL+ S +  L +  V++++
Sbjct: 403 QEYLFADGVGIRTGDYFQFYHSDPTTALSSCNEVSKNFRKLKLDWSSRNCL-QAGVSDNV 461

Query: 464 DRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQE 523
             KE++GGF+FSCCGRG SFF   NVDS PF +NFP  P+AG+FC GEIGRG   +    
Sbjct: 462 CSKELVGGFVFSCCGRGESFFERCNVDSSPFLDNFPGVPMAGVFCRGEIGRGFSVLNA-- 519

Query: 524 SQEESPAERRY---LHVYSTAYLVISYSAAPSE 553
             +E P ER     LHVYSTAYL++SY+ AP+E
Sbjct: 520 --DEGPEERTLHCCLHVYSTAYLLVSYTPAPAE 550

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540189|ref|XP_002511159.1| conserved hypothetical protein [Ricinus communis] gi|223550274|gb|EEF51761.1| conserved hypothetical protein [Ricinus communis]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 294/560 (52%), Positives = 376/560 (67%), Gaps = 49/560 (8%)

Query: 1   MDTEKPSSSKKKKKTIEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSR 60
           M+ E    +KK+       S +  ED++  IL +LPA S ASAACV KSW    N ILSR
Sbjct: 1   MEEETKRKAKKEDSRNGFDSFS--EDIVEKILRKLPALSLASAACVCKSWYHNSNRILSR 58

Query: 61  PRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTP 120
           P++ASA S   S  IALQEV+DKVL E IRPHFAIA+   GF  +  L+   +  G RTP
Sbjct: 59  PKLASAISLNPSLDIALQEVVDKVLSESIRPHFAIAS---GFGNKLGLE--KRKFGSRTP 113

Query: 121 IILSVVHGVMGRDALTDE-----FREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGL 175
           +I++  +G+MGRDA+T+E     +      D E + +N         SG +LTVG++PGL
Sbjct: 114 LIVTWANGIMGRDAVTNEDDSSNYDGDGDGDDEHMEIN---------SGFLLTVGFVPGL 164

Query: 176 KVDAIPLLRRKEIVQVPVDDTYVDVYLAP-PVPMIDQFVMDIQNYTTSVSGCASPVGIIM 234
           KVD IP LR+                + P P+ MID FVMDI+NYTTS SGC SPVGIIM
Sbjct: 165 KVDVIPYLRK----------------IRPAPMEMIDIFVMDIRNYTTSASGCTSPVGIIM 208

Query: 235 FGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFA 294
           F  ED D KPI+EKLDYAMS  T+ VGDER++F YRS  D      NP   + A+ALVFA
Sbjct: 209 FASEDFDLKPIMEKLDYAMSKETIIVGDERTKFLYRSRID----STNP--FAKAIALVFA 262

Query: 295 SDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQ 354
            D++KPHG GEIQFH A+S GVSAIGPR+K  S R    + +TWLTA++EG   ILDG++
Sbjct: 263 KDREKPHGLGEIQFHAALSNGVSAIGPRYKTASAREAFHDRNTWLTARQEGQPEILDGQR 322

Query: 355 ILRHI-DQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVG 413
           IL  I D+LENR    +LY+GVT+ RK  I  EK RL+++L+F+G+ GGD+EYL+V G+G
Sbjct: 323 ILNDINDELENRIGDTDLYIGVTELRKRRIRKEKPRLMSSLSFYGVMGGDEEYLFVHGIG 382

Query: 414 IKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFI 473
           I+T DYFQFY  D +AAL++CRN S N+RNL+L+ S K +L   D AN   +KE +GGFI
Sbjct: 383 IRTADYFQFYHSDPSAALSSCRNVSANLRNLRLDWSCKKYLYPTDGANEF-KKECIGGFI 441

Query: 474 FSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG-KLSMTGQESQEESPAER 532
           FSCCGRG +FFG  NVDS PF ENFP  PLAGIFCGGEIGR   +S T  + +E +P+  
Sbjct: 442 FSCCGRGEAFFGSPNVDSSPFLENFPGVPLAGIFCGGEIGRSFSISNTLDDREESTPS-- 499

Query: 533 RYLHVYSTAYLVISYSAAPS 552
           R LHV+S+ YLV+SY+ +P+
Sbjct: 500 RCLHVFSSVYLVLSYTPSPA 519

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488987|gb|ABK96301.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 287/556 (51%), Positives = 367/556 (66%), Gaps = 36/556 (6%)

Query: 4   EKPSSSKKKKKTIEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRI 63
           EKP    K+ KT      +  ED+  NIL R+PA SFASAACV+KSWN  CN IL +P++
Sbjct: 7   EKP----KEAKTPMTGFASINEDLFQNILKRIPALSFASAACVSKSWNRNCNQILYKPKL 62

Query: 64  ASACSFKASAPIALQEVLDKVLLEPIRPHFAIANV-GRGFNMRRTLDFLVKHLGLRTPII 122
           AS+ S      +AL+EV++KVL EPIRP FAIANV G G ++   LDFL   LG +TPII
Sbjct: 63  ASSFSLNPVQKVALEEVVNKVLSEPIRPQFAIANVIGSGVHLSGMLDFLAAKLGSKTPII 122

Query: 123 LSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPL 182
           +S   G+MGRDA+TDE++EV  +D    G +          GI+L+VG+LPGLKVDAIPL
Sbjct: 123 VSCAGGIMGRDAVTDEYKEVMIEDFWVDGASN------SSFGIMLSVGFLPGLKVDAIPL 176

Query: 183 LRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQ 242
           LR ++               A  V M+D+FVMDI+NY   VS   SP  IIMFG E  DQ
Sbjct: 177 LRPRK---------------ARGVAMVDKFVMDIRNYAALVSDSTSPSLIIMFGSEKTDQ 221

Query: 243 KPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPA--FISDAVALVFASDKDKP 300
           KP++EKLD+AMS  T+ VGDER++F YRSG + RNV       + SDAVALVFA D+++P
Sbjct: 222 KPVMEKLDHAMSRETIVVGDERAQFLYRSGIESRNVYYGSVDHYFSDAVALVFARDQNRP 281

Query: 301 HGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--STWLTAKREGHHVILDGEQILRH 358
            GTGEI FH A+S GVSAIGPR KAVS     +E   STWLT +RE    IL G++I   
Sbjct: 282 SGTGEIHFHSALSSGVSAIGPRFKAVSANEIESETGLSTWLTVRREAEQEILGGQRI--- 338

Query: 359 IDQLENRF-PQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTG 417
           ID + N    Q +L++GV+++RKC +G EK R + +LAFH + GGD+E+L+VDGVGIKTG
Sbjct: 339 IDDINNELGNQTKLFIGVSEQRKCFVGPEKPRQMRSLAFHEVMGGDEEHLFVDGVGIKTG 398

Query: 418 DYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCC 477
           DYF  Y PD +AAL++C N S+N RNLKL+ S +    +   A  +  KEV+GGF+F+C 
Sbjct: 399 DYFHLYHPDPSAALSSCSNISKNFRNLKLDWSFRS--CQLHAARGVGEKEVIGGFVFACW 456

Query: 478 GRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHV 537
           GRG SFFG  NVDS PF +NFP   +AGIF  GEIGRG   +   ES +E       +HV
Sbjct: 457 GRGESFFGHNNVDSSPFLDNFPGVLMAGIFTYGEIGRGFSILNTDESGQEVKTLCFCVHV 516

Query: 538 YSTAYLVISYSAAPSE 553
           YST YL++SY+ AP E
Sbjct: 517 YSTVYLLVSYTPAPIE 532

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118086|ref|XP_002331554.1| predicted protein [Populus trichocarpa] gi|222873778|gb|EEF10909.1| predicted protein [Populus trichocarpa]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 289/557 (51%), Positives = 368/557 (66%), Gaps = 37/557 (6%)

Query: 4   EKPSSSKKKKKTIEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRI 63
           EKP    K+ KT      +  ED+  NIL R+PA SFASAACV+KSW+  CN IL +P++
Sbjct: 3   EKP----KEAKTPMTGFASINEDLFQNILKRIPALSFASAACVSKSWSRNCNQILYKPKL 58

Query: 64  ASACSFKASAPIALQEVLDKVLLEPIRPHFAIANV-GRGFNMRRTLDFLVKHLGLRTPII 122
           ASA S      +AL+EV++KVL EPIRP FAIANV G G ++   LDFL   LG +TPII
Sbjct: 59  ASAFSLNPVQKVALEEVVNKVLSEPIRPQFAIANVIGSGVDLSGILDFLAAKLGSKTPII 118

Query: 123 LSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPL 182
           +S   G+MGRDA+TDE++EV  +D    G +          GI+L VG+LPGLKVDAIPL
Sbjct: 119 VSCAGGIMGRDAVTDEYKEVMIEDFWVDGASN------SSFGIMLAVGFLPGLKVDAIPL 172

Query: 183 LRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQ 242
           LR ++               A  V M+D+FVMDI+NY   VS   SP  IIMFG E  DQ
Sbjct: 173 LRPRK---------------AQGVAMVDKFVMDIRNYAALVSDSTSPSLIIMFGSEKTDQ 217

Query: 243 KPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPA--FISDAVALVFASDKDKP 300
           KP++EKLD+AMS  T+ VGDER++F YRSG + RNV       + SDAVALVFA D+++P
Sbjct: 218 KPVMEKLDHAMSRETIVVGDERAQFLYRSGIESRNVYYGSVDQYFSDAVALVFARDQNRP 277

Query: 301 HGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--STWLTAKREGHHVILDGEQILRH 358
            GTGEI FH A+S GVSAIGPR KAVS     +E   STWL+ +REG   IL G++I   
Sbjct: 278 SGTGEIHFHSALSSGVSAIGPRFKAVSANEIESETGLSTWLSVRREGGQEILGGQRI--- 334

Query: 359 IDQLENRF-PQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTG 417
           ID + N    Q +L++GV+++RKC +G EK R + +LAFH + GGD E+L+VDGVGIKTG
Sbjct: 335 IDDINNELGNQTKLFIGVSEQRKCFVGPEKPRQMRSLAFHEVMGGDVEHLFVDGVGIKTG 394

Query: 418 DYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCC 477
           DYF  Y PD +AAL++C N S+N RNLKL+ S +    +   A  +  KEV+GGF+F+C 
Sbjct: 395 DYFHLYHPDPSAALSSCSNISKNFRNLKLDWSFRSC--QLHAARGVGEKEVIGGFVFACW 452

Query: 478 GRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG-KLSMTGQESQEESPAERRYLH 536
           GRG SFFG  NVDS PF +NFP  P+AGIF  GEIGRG  +  T  ES +E       +H
Sbjct: 453 GRGESFFGHSNVDSSPFLDNFPGVPMAGIFTYGEIGRGFSILNTDFESGQEDKTLCFCVH 512

Query: 537 VYSTAYLVISYSAAPSE 553
           VYST YL++SY+ AP E
Sbjct: 513 VYSTVYLLVSYTPAPIE 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115878|ref|XP_002317147.1| predicted protein [Populus trichocarpa] gi|222860212|gb|EEE97759.1| predicted protein [Populus trichocarpa]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/550 (50%), Positives = 362/550 (65%), Gaps = 40/550 (7%)

Query: 12  KKKTIEISSLADC-EDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFK 70
           KK+  +++  A   ED++ NIL R PA SFASAACV KSWN  CN ILS+P++ASA S  
Sbjct: 36  KKQERQLAGFASINEDLVQNILKRTPASSFASAACVCKSWNQTCNQILSKPKLASAFSLN 95

Query: 71  ASAPIALQEVLDKVLLEPIRPHFAIANV-GRGFNMRRTLDFLVKHLGLRTPIILSVVHGV 129
               +A QEV++KVL EPIRP FAIANV G G ++  TL+FL   LG +TPII+S  +G+
Sbjct: 96  PDQKVASQEVVNKVLSEPIRPQFAIANVIGSGVDLSETLNFLAAKLGSKTPIIVSCANGI 155

Query: 130 MGRDALTDEFREVKFQDH--EDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKE 187
           +GRDA+TDE +EV  +D   +    N G        G++LTVG+LPGL+V+AIPLLR ++
Sbjct: 156 IGRDAVTDEHQEVMLEDFWADAASKNSGF-------GVLLTVGFLPGLQVEAIPLLRPRK 208

Query: 188 IVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIE 247
                          A  + ++D+FVMDI+NY  +VSG  SP  +IMFG E  +QKP++E
Sbjct: 209 A--------------ASRMALVDKFVMDIRNYAANVSGSTSPALVIMFGGEKAEQKPVME 254

Query: 248 KLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGN-PAFISDAVALVFASDKDKPHGTGEI 306
           KLD+AMS  T   GDER++F Y+SG + RNV G+   +ISDAV LVFA D+ +    GEI
Sbjct: 255 KLDHAMSRETFIAGDERAQFLYKSGIESRNVHGSGNEYISDAVVLVFARDRHRASDVGEI 314

Query: 307 QFHLAMSEGVSAIGPRHKAVSVRANHAEG--STWLTAKREGHHVILDGEQILRHIDQLEN 364
           QFH A+S GVS IGPR+K VSV+    E   +T L A+REG   IL G++I   ID + N
Sbjct: 315 QFHSALSSGVSTIGPRYKVVSVKEIQPETDLTTCLKARREGEQEILGGQRI---IDDINN 371

Query: 365 RF-PQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFY 423
               + EL++GV+K+R+C IGSE  +L+ +LAFH ++GGD E+L+V G GI +GDYF FY
Sbjct: 372 ELVNKTELFIGVSKQRQCVIGSENPKLLRSLAFHEVKGGDGEHLFVSGDGIGSGDYFHFY 431

Query: 424 QPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSF 483
             D  AAL+A  N S+N RNLKL+ S          A  +  KEV+GG +FSC GRG SF
Sbjct: 432 HSDSKAALSATSNVSKNFRNLKLDWSSSQLH-----AGGVGSKEVVGGLVFSCWGRGESF 486

Query: 484 FGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG--KLSMTGQESQEESPAERRYLHVYSTA 541
           FG  NVDS PF +NFP  P+AGIFC GE+GRG   L+    E QEE  +    LHVYST 
Sbjct: 487 FGHSNVDSSPFLDNFPGIPMAGIFCYGEVGRGFTMLNADDHEDQEEKTS-CCCLHVYSTI 545

Query: 542 YLVISYSAAP 551
           Y+++SY+ AP
Sbjct: 546 YVLVSYTPAP 555

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516535|ref|XP_003526949.1| PREDICTED: F-box/LRR-repeat protein At5g63520-like [Glycine max]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/536 (50%), Positives = 351/536 (65%), Gaps = 37/536 (6%)

Query: 25  EDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKV 84
           ED+L NIL+RLP+  FASAACV+KSWN +C+ ILSRP+++SA S   S P A+ EV+ KV
Sbjct: 34  EDLLQNILARLPSLHFASAACVSKSWNSLCSRILSRPKLSSAISLNPSLPDAVNEVVHKV 93

Query: 85  LLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVK- 143
           L EPIRPHFAIAN+G GFN  +TL  + K LG   P+I++V +G+MGRDA+TDEF+EVK 
Sbjct: 94  LSEPIRPHFAIANIGTGFNTAKTLCLIRKSLGFNIPVIVTVANGIMGRDAVTDEFKEVKW 153

Query: 144 ---FQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDV 200
              F    +    R I       G+VLTVGYLPGLKV+A+PL R  +  Q     T+V  
Sbjct: 154 GALFSGFGEESYTRFI-----NEGLVLTVGYLPGLKVEALPLRRPTKTSQA----TWV-- 202

Query: 201 YLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFV 260
                    D F+ DI+ Y+ SVS    PVGII+FG+   D K ++EKLD+AM M+ V V
Sbjct: 203 ---------DNFIKDIKEYSASVSSSPFPVGIILFGEASSDMKLVLEKLDHAMPMDMVIV 253

Query: 261 GDERSR--FAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSA 318
           GDER    F ++SG+D R +C     I +AVALVFA D+D+  GT  I+FH+A+S GVS 
Sbjct: 254 GDERGSFDFVHKSGNDSRIICSKKGNI-EAVALVFAQDRDRSLGT--IRFHVALSNGVST 310

Query: 319 IGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQ-LENRFPQVELYVGVTK 377
           +GPR+KA SV++N+A+ STWLTA+REG    LDG+ IL  I+  L+N     +LY+GV K
Sbjct: 311 VGPRYKAASVKSNNADCSTWLTARREGQQENLDGQSILLDINNLLDNHIESPDLYIGVIK 370

Query: 378 RRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNA 437
            RK S G+EK    T +A+HG+ GGD+EYLYVDG+GIKTGD FQFY  D N ALA+    
Sbjct: 371 HRKLSTGAEKPMPRTCIAYHGVVGGDEEYLYVDGIGIKTGDIFQFYYSDPNTALASLTKV 430

Query: 438 SENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFEN 497
            + ++++ L  + K   G  D A +     V GG +F+C GRG SFFG  NVDS PF EN
Sbjct: 431 HDALKSIHLEKNSKSSKGDGDNATN-----VFGGIVFACYGRGESFFGRHNVDSSPFLEN 485

Query: 498 FPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE 553
           FP  P++GIFCGGE+ R   ++ GQ  +  SP     LHVYST YL +SY+    E
Sbjct: 486 FPGVPVSGIFCGGEMVRPCTTVIGQ-CEGASPIS-CCLHVYSTVYLAMSYTPPSVE 539

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115874|ref|XP_002317146.1| predicted protein [Populus trichocarpa] gi|222860211|gb|EEE97758.1| predicted protein [Populus trichocarpa]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 260/498 (52%), Positives = 335/498 (67%), Gaps = 36/498 (7%)

Query: 25  EDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKV 84
           ED++ NIL R PA SFASAACV+KSWN  CN ILS+P++ASA S      +ALQEV+ KV
Sbjct: 20  EDLVQNILKRTPATSFASAACVSKSWNHNCNQILSKPKLASAFSLNPDPKVALQEVVSKV 79

Query: 85  LLEPIRPHFAIANV---GRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFRE 141
           L EPIRP FAIANV   G  + +  TL  L   LG +TPII+S  +G++GRDA+T E +E
Sbjct: 80  LSEPIRPQFAIANVIESGVEY-LSETLYLLAAKLGSKTPIIVSCTNGIIGRDAVTSEHKE 138

Query: 142 VKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVY 201
           V     ED  V+      G   G++LTVGYLPGLKV+A+PLLR ++              
Sbjct: 139 VML---EDFWVDAASKNSG--FGMLLTVGYLPGLKVEALPLLRPRK-------------- 179

Query: 202 LAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVG 261
            A PV MID FVMDI+NY+ SVSG  SP  IIMFG E+ D KP++EKLD+AMS  T+  G
Sbjct: 180 -AGPVAMIDNFVMDIKNYSASVSGSTSPALIIMFGGEEADLKPVMEKLDHAMSRETIIAG 238

Query: 262 DERSRFAYRSGDDLRNVCGNPA-FISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIG 320
             RS+F YR G + RN+ G+   + +DAVALVFA D+DKP G G+IQFH A+S GVSAIG
Sbjct: 239 GMRSQFLYRRGIESRNIYGSSTKYFTDAVALVFARDEDKPSGEGKIQFHSAISSGVSAIG 298

Query: 321 PRHKAVSVRANHAEG--STWLTAKREGHHVILDGEQILRHID-QLENRFPQVELYVGVTK 377
           PR+KAVSV+   +E   +TWLT++REG   IL G+ I+  I+ +L N+    EL++GV+K
Sbjct: 299 PRYKAVSVKETQSETGLTTWLTSRREGEQEILGGQMIIDSIESELVNK---TELFIGVSK 355

Query: 378 RRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNA 437
           +R+  IGSE  +L+ +LA H ++GGD E+L+V G GI +GDYF FY  D  AAL+A  N 
Sbjct: 356 QRQSVIGSENPKLLRSLALHQVKGGDGEHLFVSGDGIGSGDYFHFYHSDPKAALSATSNV 415

Query: 438 SENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFEN 497
           S+  RNLKL+     +   +  A  +  KEV+GG +FSC GRG SFFG  NVDS PF +N
Sbjct: 416 SKYFRNLKLD-----WRSCQLHAGDVGSKEVVGGLVFSCWGRGASFFGHSNVDSSPFLDN 470

Query: 498 FPSAPLAGIFCGGEIGRG 515
           FP  P+AGIF  GE+GRG
Sbjct: 471 FPGIPMAGIFGCGEVGRG 488

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	553
UNIPROTKB|H3BTR7	78	FBXO22 "F-box only protein 22"	0.090	0.641	0.442	8.3e-05
UNIPROTKB|Q8NEZ5	403	FBXO22 "F-box only protein 22"	0.090	0.124	0.442	0.00014
UNIPROTKB|A5PJX0	404	FBXO22 "Uncharacterized protei	0.113	0.155	0.388	0.00027
UNIPROTKB|E2RAB7	401	FBXO22 "Uncharacterized protei	0.157	0.216	0.333	0.00041

UNIPROTKB|H3BTR7 FBXO22 "F-box only protein 22" [Homo sapiens (taxid:9606)]

 Score = 104 (41.7 bits), Expect = 8.3e-05, P = 8.3e-05
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query:   471 GFIFSCCGRGNSFFGGL-NVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTG 521
             GF+F+C GRG  ++    NV++  F + FPS PL G F  GEIG  ++ +TG
Sbjct:    18 GFMFACVGRGFQYYRAKGNVEADAFRKFFPSVPLFGFFGNGEIGCDRI-VTG 68

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0010830 "regulation of myotube differentiation" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q8NEZ5 FBXO22 "F-box only protein 22" [Homo sapiens (taxid:9606)]

 Score = 104 (41.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query:   471 GFIFSCCGRGNSFFGGL-NVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTG 521
             GF+F+C GRG  ++    NV++  F + FPS PL G F  GEIG  ++ +TG
Sbjct:   321 GFMFACVGRGFQYYRAKGNVEADAFRKFFPSVPLFGFFGNGEIGCDRI-VTG 371

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0010830 "regulation of myotube differentiation" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

UNIPROTKB|A5PJX0 FBXO22 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 109 (43.4 bits), Expect = 0.00027, Sum P(2) = 0.00027
 Identities = 26/67 (38%), Positives = 40/67 (59%)

Query:   456 RRDVANSIDRKEVLGGFIFSCCGRGNSFFGGL-NVDSFPFFENFPSAPLAGIFCGGEIGR 514
             R   AN  ++  +  GF+F+C GRG+ ++    NV++  F + FPS PL G F  GEIG 
Sbjct:   309 RLKAANIPEQNTI--GFMFACVGRGSQYYRAKKNVEADAFRKFFPSVPLFGFFGNGEIGC 366

Query:   515 GKLSMTG 521
              ++ +TG
Sbjct:   367 DRI-VTG 372

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0010830 "regulation of myotube differentiation" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

UNIPROTKB|E2RAB7 FBXO22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 110 (43.8 bits), Expect = 0.00041, Sum P(2) = 0.00041
 Identities = 31/93 (33%), Positives = 49/93 (52%)

Query:   456 RRDVANSIDRKEVLGGFIFSCCGRGNSFFGGL-NVDSFPFFENFPSAPLAGIFCGGEIGR 514
             R   AN  +R  +  GF+F+C GRG  ++    NV++  F + FPS PL G F  GEIG 
Sbjct:   306 RLKAANIPERNTI--GFMFACVGRGFQYYRAKGNVEADAFRKFFPSVPLFGFFGNGEIGC 363

Query:   515 GKLSMTGQESQEE--SPAERRYLHVYSTAYLVI 545
              ++ +TG    ++     +    H Y+T  ++I
Sbjct:   364 DRI-VTGNFVLKKCNEVKDDDLFHSYTTIMVLI 395

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0010830 "regulation of myotube differentiation" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FMV0	FBL91_ARATH	No assigned EC number	0.4359	0.9150	0.9565	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	553
pfam10442	137	pfam10442, FIST_C, FIST C domain	4e-11
COG4398	389	COG4398, COG4398, Uncharacterized protein conserve	8e-08
pfam00646	48	pfam00646, F-box, F-box domain	2e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	3e-05
pfam12937	47	pfam12937, F-box-like, F-box-like	6e-05

>gnl|CDD|220757 pfam10442, FIST_C, FIST C domain

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 26/102 (25%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 414 IKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFI 473
           +  G+  Q    D    +   R A E  R                       +   G  +
Sbjct: 56  VPEGEELQLMLRDAEDLIEDLRRALEAARE--------------------GGRPPAGALL 95

Query: 474 FSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG 515
           FSC GRG   FG  + +     E    AP+ G F  GEIG G
Sbjct: 96  FSCIGRGLLLFGEPDEELEAVREVLGDAPVIGFFTYGEIGPG 137

The FIST C domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids. Length = 137

>gnl|CDD|226833 COG4398, COG4398, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 54.4 bits (131), Expect = 8e-08
 Identities = 19/45 (42%), Positives = 24/45 (53%)

Query: 469 LGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIG 513
           +G  +F+C GRG   FG  + D+    E     PLAG F  GEIG
Sbjct: 323 VGALLFTCNGRGRRMFGVPDHDASTIEELLGGIPLAGFFAAGEIG 367

Length = 389

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 18 ISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56
          +  L   +D+L  ILSRL  K     + V+K W  + +S
Sbjct: 3  LLDL--PDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDS 39

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56
           +++L  ILS+L  K       V++ W  + +S
Sbjct: 2  PDEILEEILSKLDPKDLLRLRKVSRKWRSLIDS 34

Length = 41

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 40.2 bits (95), Expect = 6e-05
 Identities = 7/32 (21%), Positives = 14/32 (43%)

Query: 25 EDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56
          +++L  I S L  +     A V + W  + + 
Sbjct: 6  DEILLQIFSYLDPRDLLRLALVCRRWRELASD 37

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	553
COG4398	389	Uncharacterized protein conserved in bacteria [Fun	100.0
COG3287	379	Uncharacterized conserved protein [Function unknow	99.97
PF08495	198	FIST: FIST N domain; InterPro: IPR013702 The FIST	99.85
PF10442	136	FIST_C: FIST C domain; InterPro: IPR019494 This en	99.72
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	96.84
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	96.66
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	96.12
PF10442	136	FIST_C: FIST C domain; InterPro: IPR019494 This en	91.56
PF08495	198	FIST: FIST N domain; InterPro: IPR013702 The FIST	86.12

>COG4398 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=4.5e-63  Score=493.78  Aligned_cols=366  Identities=22%  Similarity=0.288  Sum_probs=314.3

Q ss_pred             ceeeeecCCCChhHHHHHHHHHHHcCCCC-CceEEEEEecccC---HHHHHHHHHHhcCCCCcEEEeeeeeeeccccccc
Q 008790           62 RIASACSFKASAPIALQEVLDKVLLEPIR-PHFAIANVGRGFN---MRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTD  137 (553)
Q Consensus        62 k~a~~~S~~pd~~~A~~Evv~~~l~e~~~-p~~~ia~~~~~~~---~~~~l~~i~~~~g~~~plig~~~~Giig~d~~~~  137 (553)
                      +.+-|.|+.|+.++|+.||+.|+.+|... .+.+++|+++.-+   ..++|.++++++.. ..||||++.|||++.+   
T Consensus         6 ~w~nAlstRpsle~A~~ea~~~a~~~l~g~~~l~~v~l~Sra~~~~aa~vlp~v~e~ls~-p~lIGC~~~giia~~~---   81 (389)
T COG4398           6 GWSNALSTRPSLERAAVEAAAQARDELAGEAPLLAVLLGSRAHTDRAADVLPAVQEMLSP-PALIGCIAQGIVAGRH---   81 (389)
T ss_pred             eeecccccchhHHHHHHHHHHHhhhcccCCCCEEEEEecccchhhhHHHHHHHHHHhcCc-cceeeecccceeeeee---
Confidence            34567888999999999999999999744 4555559998533   88999999999985 8899999999997665   


Q ss_pred             ccccccccccccccccccccccccccceEEeecccCCCcccccccccccc-----ccccccCCccccccCCCCcccccce
Q 008790          138 EFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKE-----IVQVPVDDTYVDVYLAPPVPMIDQF  212 (553)
Q Consensus       138 e~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~~G~~pgl~v~~~pl~~~~~-----~~~~~~~~~~~~~~~~~~~~~vD~~  212 (553)
                      |++.+.                    ++++|+..  |+.+++++|.+-|+     |.++.+|.|..|.|+    .+.|  
T Consensus        82 ElE~E~--------------------A~s~~lA~--Gv~~~~F~l~~~~t~~~a~i~~~~~d~t~~~~~i----lL~d--  133 (389)
T COG4398          82 ELEDEP--------------------AVSVWLAS--GVAAETFHLDFVRTGSGALITGYRFDRTARDLHL----LLPD--  133 (389)
T ss_pred             eecCCc--------------------eEEEEecc--CcccceeecccccCCCcceEEeeecCCCCCCceE----EccC--
Confidence            766555                    79999955  99999999887776     444555554444444    4434  


Q ss_pred             ecccccccccccCCCCCcEEEEecCCCCChhHHHHHhhhhcCCCceeecccccccccccCCccceeeCCCceeCceEEEE
Q 008790          213 VMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALV  292 (553)
Q Consensus       213 ~~d~~~~~~~~s~~~~p~gi~mfgd~~~d~~~ll~gL~~al~~~~vI~Gg~ag~~~f~~~~~sr~~~~~~v~~~gaVal~  292 (553)
                           ||                   ++....++++|+.++|..+++.|-++|.   +.+++.+.|++..++.++.|||.
T Consensus       134 -----p~-------------------t~~~n~li~~l~~~~PgttvvGG~~Sgg---~~~G~~~Lf~~~~~~~~G~vGv~  186 (389)
T COG4398         134 -----PY-------------------TFPSNLLIEHLNTDLPGTTVVGGVVSGG---RRRGDTRLFRDHDVLTSGVVGVR  186 (389)
T ss_pred             -----Cc-------------------ccchHHHhhccCcCCCCceEEccEeecC---ccCCceEEeecCCcccCceeEEe
Confidence                 33                   5555899999999999877666667776   56667899999999999999999


Q ss_pred             EecCCCCCCCCCCEEEEEEeccCCeecCCCeEEEEeccccccCceeeccccccccccccCchHhHHhhHH-------hcc
Q 008790          293 FASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQL-------ENR  365 (553)
Q Consensus       293 f~~d~~~~~~~G~i~~~~~vsqGcrPiGp~~~VT~v~~~~segNv~l~~~~~g~l~eLDg~pAL~~L~e~-------~~~  365 (553)
                      +         .| ++..+.|+|||||||.+|.||     ++++|+         +.||+|+|-|..|.++       +++
T Consensus       187 L---------~G-i~l~~vVsQGCRPIGeP~iVt-----~a~~ni---------ItEl~gr~PL~~Lr~ii~~lsp~er~  242 (389)
T COG4398         187 L---------PG-IRLVPVVSQGCRPIGEPYIVT-----GADGNI---------ITELGGRPPLQRLREIVEGLSPDERA  242 (389)
T ss_pred             e---------cc-ceecchhccCcccCCCceEee-----ccCcee---------EeecCCCChHHHHHHHhhccChhhHH
Confidence            9         77 999999999999999999999     899999         9999999999976654       788


Q ss_pred             CCCcceEEEEeeccccccCCCCCceeeeeeeccccccCccc-ceeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHh
Q 008790          366 FPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEY-LYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNL  444 (553)
Q Consensus       366 l~~~~L~iGv~~~~~~~~~~~~~~lvR~l~v~~VlG~D~e~-sI~~g~~I~~G~~vqf~~RD~~aA~~dl~~~~~~lr~l  444 (553)
                      |.+++|+||++++|++..-.+++|++|.+     +|+||.. +|.+++-|++|+++||++||.+++.+||+-..+..   
T Consensus       243 L~~~~L~iGi~~DE~~~~~~qGDFlIR~l-----LG~DPs~GaIaIgd~Vr~G~~lQF~~RD~~as~~dL~~l~er~---  314 (389)
T COG4398         243 LVSHGLQIGIVVDEHLAAPGQGDFLIRGL-----LGADPSTGAIAIGEVVRVGATLQFQVRDAAAADKDLRLLVERA---  314 (389)
T ss_pred             HHhcCceEEEEehhhhcCCCCCceEeeec-----cccCCCCCceeecceeccCcEEEEEEcccccchhHHHHHHHHH---
Confidence            99999999999999887778899999999     9999999 89999999999999999999999999888766544   


Q ss_pred             hhccCCCCccccccccCccCCCceeEEEEEEeCCCCcCCCCCCccchHhHHhhCCCCceeeeecccccCCCCCccCCCCC
Q 008790          445 KLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQES  524 (553)
Q Consensus       445 ~~~~~~k~~~~~~~~~~~~~~~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~Lg~vPlaGFy~~GEIgP~~~~~v~g~~  524 (553)
                      .+++                ...++|||||||+|||..|||.+|+|+++|.+.||++|++||||+|||||     +++  
T Consensus       315 ~~e~----------------~~~avGaLmFsC~GRG~~m~G~p~~Ds~~~~~~~~gipl~GFF~~GEIGp-----V~g--  371 (389)
T COG4398         315 AAEL----------------PGRAVGALLFTCNGRGRRMFGVPDHDASTIEELLGGIPLAGFFAAGEIGP-----VAG--  371 (389)
T ss_pred             HhhC----------------CCccceeEEEEecCccccccCCCCccHHHHHHHhCCCcccceeecCcccc-----ccc--
Confidence            3333                35689999999999999999999999999999999999999999999999     999  


Q ss_pred             CCCCCcccccccccceeeeeeccC
Q 008790          525 QEESPAERRYLHVYSTAYLVISYS  548 (553)
Q Consensus       525 ~~~~~~~~~~LH~yT~v~~l~se~  548 (553)
                             +|+|||||+++++|.++
T Consensus       372 -------r~~LHG~Ts~~ai~~~~  388 (389)
T COG4398         372 -------RNALHGFTASMALFVDD  388 (389)
T ss_pred             -------hhhhhccceeeEEEeec
Confidence                   99999999999999765

>COG3287 Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=2.8e-29  Score=262.82  Aligned_cols=361  Identities=14%  Similarity=0.106  Sum_probs=245.2

Q ss_pred             CChhHHHHHHHHHHHcCC-CCCceEEE-EEecccCHHHHHHHHHHhcCCCCcEEEeeeeeeecccccccccccccccccc
Q 008790           71 ASAPIALQEVLDKVLLEP-IRPHFAIA-NVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHE  148 (553)
Q Consensus        71 pd~~~A~~Evv~~~l~e~-~~p~~~ia-~~~~~~~~~~~l~~i~~~~g~~~plig~~~~Giig~d~~~~e~~~~~~~~~~  148 (553)
                      ++..+|-+++.+.+..-. +++.|++. |.-..++|..+...|++.++ ++++|||+|.|+|..+    ++++-++    
T Consensus        10 ~~~~d~~~v~~e~~~~~~~~~~~~~~ifF~~~~~~~~~l~~~l~~~~p-g~~liGCSTaGeitp~----g~~~~~V----   80 (379)
T COG3287          10 SDGKDAESVIEEMARQLGSDRSDFVLIFFSPERDEHVQLASALKQAFP-GICLIGCSTAGEITPD----GFKNGSV----   80 (379)
T ss_pred             cCcCCHHHHHHHHHHhhCcCCCCeEEEEeccccccHHHHHHHHHhhCC-CCeEeccccCceEccc----cccCCeE----
Confidence            344444443333333333 78999997 66666668899999999999 7999999999999844    4443331    


Q ss_pred             cccccccccccccccceEEeecccCCCccccccccccccccccccCCccccccCCCCcccccceecccccccccccCCCC
Q 008790          149 DIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCAS  228 (553)
Q Consensus       149 ~~~~~~~~~~~~~~~gi~l~~G~~pgl~v~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~vD~~~~d~~~~~~~~s~~~~  228 (553)
                       -.+.+++.....-+       .  ++-.              +.+.-.++-..    ..++++..|...   ..+ -+-
T Consensus        81 -~il~~~~~~~a~~s-------~--~~~~--------------~~s~~~~~~i~----~~~E~l~~~~~~---~~~-~~r  128 (379)
T COG3287          81 -LLLAFDSSEFAALS-------T--ALVD--------------RESPVSRDPIA----EAIERLIRDKRD---RLS-PTR  128 (379)
T ss_pred             -EEEEechHHHHHhh-------h--hhcc--------------ccCcccchhHH----HHHHHHHhcccc---ccc-ccC
Confidence             11112233222100       0  0001              11110000001    222221111110   011 122


Q ss_pred             CcEEEEecCCCCC-hhHHHHHhhhhcCCCceeecccccc-cccccCCccceeeCCCceeCceEEEEEecCCCCCCCCCCE
Q 008790          229 PVGIIMFGKEDMD-QKPIIEKLDYAMSMNTVFVGDERSR-FAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEI  306 (553)
Q Consensus       229 p~gi~mfgd~~~d-~~~ll~gL~~al~~~~vI~Gg~ag~-~~f~~~~~sr~~~~~~v~~~gaVal~f~~d~~~~~~~G~i  306 (553)
                      +...+.|-|+..+ .+.+++++..+....++|.||.+|| +.|+++   ++++++++..++||-+++         ++.+
T Consensus       129 ~~~~l~f~dgl~~~ee~l~~~~~~~~~~~iPi~GGsAaD~~~~e~t---~v~~~g~v~~~aavi~l~---------~t~l  196 (379)
T COG3287         129 PVLALTFIDGLSTSEEVLLDGAVLAALETIPIFGGSAADDLEFERT---YVFDEGEVHEDAAVILLF---------GTQL  196 (379)
T ss_pred             ceEEEEEeccCCcchhhhhhhhhcccccceeeeccccCCCCccceE---EEEEccccccCceEEEEe---------cceE
Confidence            4677888888444 6667776778888889999999998 799887   889999999999999999         9999


Q ss_pred             EEEEEeccCCeecCCCeEEEEeccccccCceeeccccccccccccCchHhHHhhHHh---ccCCCcceE-EEEeeccccc
Q 008790          307 QFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLE---NRFPQVELY-VGVTKRRKCS  382 (553)
Q Consensus       307 ~~~~~vsqGcrPiGp~~~VT~v~~~~segNv~l~~~~~g~l~eLDg~pAL~~L~e~~---~~l~~~~L~-iGv~~~~~~~  382 (553)
                      .|+++..+||.|.+.+++||     |+++|+         ++||||+||.+.+.++-   ++++...+. .++...+.  
T Consensus       197 ~f~~~~~~g~~Pt~~~~~VT-----ka~~~v---------V~EiDgePA~e~Y~e~vg~~e~l~~~~~~~~pl~~~~~--  260 (379)
T COG3287         197 KFGHGFAHGFVPTDKTGVVT-----KADGDV---------VYEIDGEPAAEEYAEVVGAVEELDPEMFIPNPLGVRDL--  260 (379)
T ss_pred             EeecccccceEEccceEEEE-----eecCcE---------EEEeCCCcHHHHHHHHhCchhhcChhHhcccceEEEeC--
Confidence            99999999999999999999     888999         99999999999666553   344332222 23333221  


Q ss_pred             cCCCCCceeeeeeeccccccCcccceeec-cCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHhhhccCCCCccccccccC
Q 008790          383 IGSEKSRLITTLAFHGIRGGDQEYLYVDG-VGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVAN  461 (553)
Q Consensus       383 ~~~~~~~lvR~l~v~~VlG~D~e~sI~~g-~~I~~G~~vqf~~RD~~aA~~dl~~~~~~lr~l~~~~~~k~~~~~~~~~~  461 (553)
                         ...+++|.+     ...|++.++.+- ..|+.|..++++....  +..+++++   ++.+..++             
T Consensus       261 ---~~~y~vr~p-----~~~~e~~~~~f~~~~i~~~v~lr~~~~~~--~~~~~e~~---~~~a~~~~-------------  314 (379)
T COG3287         261 ---GPLYYVRAP-----QFVDEEGGLIFLSAAIPLGVVLRLGETGG--IERVTERA---LRRAFEDL-------------  314 (379)
T ss_pred             ---CCcEEEeCc-----ceeccccceEEeeccCCCccEEEeecCCc--ccHHHHHH---HHHHHhhc-------------
Confidence               345777777     899988865554 4999999999997555  33333332   22223332             


Q ss_pred             ccCCCceeEEEEEEeCCCCcCCCCCCccchHhHHhhCCCCceeeeecccccCCCCCccCCCCCCCCCCccccccccccee
Q 008790          462 SIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTA  541 (553)
Q Consensus       462 ~~~~~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~Lg~vPlaGFy~~GEIgP~~~~~v~g~~~~~~~~~~~~LH~yT~v  541 (553)
                         ++++.+-|.|+|++|  .++-+.+.+.+.+++.+|.=|.+|||||||++|     ..+         .+..||+|.+
T Consensus       315 ---~~~~~~vl~f~C~~R--~l~~~~~~~~~~~~e~l~~~~~vGf~tyGE~~~-----~~g---------~~~h~Nqtf~  375 (379)
T COG3287         315 ---PKAPALVLVFDCALR--RLFLDTDKERQPLKEQLPEDPCVGFNTYGEQGP-----ITG---------ENVHHNQTFV  375 (379)
T ss_pred             ---cCCCceEEEEehhhh--hhhhhhhhhhhHHHHhcccCceecccccccccc-----ccc---------cceeeeeEEE
Confidence               234899999999999  677899999999999999669999999999999     336         6899999987


Q ss_pred             eeee
Q 008790          542 YLVI  545 (553)
Q Consensus       542 ~~l~  545 (553)
                      -.+|
T Consensus       376 ~v~f  379 (379)
T COG3287         376 GVAF  379 (379)
T ss_pred             EEeC
Confidence            6554

>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya

Probab=99.85  E-value=5.9e-21  Score=181.77  Aligned_cols=195  Identities=17%  Similarity=0.276  Sum_probs=142.4

Q ss_pred             CCceEEEEEecccCHHH-HHHHHHHhcCCCCcEEEeeeeeeecccccccccccccccccccccccccccccccccceEEe
Q 008790           90 RPHFAIANVGRGFNMRR-TLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLT  168 (553)
Q Consensus        90 ~p~~~ia~~~~~~~~~~-~l~~i~~~~g~~~plig~~~~Giig~d~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~  168 (553)
                      ||+++|+|....|+.+. +++.|++++| ..++|||++.|+|....  ++                ..+     .+|+++
T Consensus         1 ~p~lvi~f~s~~~~~~~~i~~~l~~~~p-~~~iiG~st~g~i~~~~--~~----------------~~~-----~~v~~~   56 (198)
T PF08495_consen    1 RPDLVILFCSPEYDEEAKILEALRERLP-DAPIIGCSTAGEICGGN--EG----------------YSD-----DGVSLL   56 (198)
T ss_pred             CCEEEEEEecchhhhhHHHHHHHHHHCC-CCcEEEEccCchhCCCc--CC----------------CCC-----ccEEEE
Confidence            79999999999999888 9999999999 79999999999997510  01                111     144444


Q ss_pred             ecccCCCccccccccccccccccccCCccccccCCCCcccccceecccccccccccCCCCCcEEEEecCC-CCChhHHHH
Q 008790          169 VGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKE-DMDQKPIIE  247 (553)
Q Consensus       169 ~G~~pgl~v~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~vD~~~~d~~~~~~~~s~~~~p~gi~mfgd~-~~d~~~ll~  247 (553)
                      .  ++.-.+...-.      ...+++...    .....+++.++..++...        ....+++|.|+ +.+.+++++
T Consensus        57 ~--~~~~~~~~~~~------~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~~~l~~~d~~~~~~~~~l~  116 (198)
T PF08495_consen   57 G--FSSSEVRVFAS------LIDPFSEDP----IEAAREALRDLVKSLDSD--------PSPFLLLFADGLSSSEEELLE  116 (198)
T ss_pred             E--ecCCcEEEEEE------EccccCCCc----HHHHHHHHHHHHhhcccc--------CCcEEEEEeCCCCcCHHHHHH
Confidence            3  22211211110      001111100    011123333222222110        14678889998 888999999


Q ss_pred             HhhhhcCCCceeecccccc-cccccCCccceeeCCCceeCceEEEEEecCCCCCCCCCCEEEEEEeccCCeecCCCeEEE
Q 008790          248 KLDYAMSMNTVFVGDERSR-FAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAV  326 (553)
Q Consensus       248 gL~~al~~~~vI~Gg~ag~-~~f~~~~~sr~~~~~~v~~~gaVal~f~~d~~~~~~~G~i~~~~~vsqGcrPiGp~~~VT  326 (553)
                      +|.......++|+||.+|+ ..|+++   +++++++++++++|+++|         .+++++.+.+.|||+|+|.+++||
T Consensus       117 ~l~~~~~~~~~i~GG~a~~~~~~~~~---~v~~~~~~~~~g~v~~~~---------~~~l~~~~~~~~g~~p~g~~~~VT  184 (198)
T PF08495_consen  117 GLYSSVGPDIPIFGGSAGDNLDFERT---YVFANGQVYSDGAVVVAF---------SGSLKIDSFVSHGWEPIGKPMTVT  184 (198)
T ss_pred             HHHHhcCCCceEEEEECCCCCcCCce---EEEEeeeeccCcEEEEEE---------cCCceEEEEEecCeEeCCCCEEEE
Confidence            9988999999999999998 556555   999999999999999999         779999999999999999999999


Q ss_pred             EeccccccCceeeccccccccccccCch
Q 008790          327 SVRANHAEGSTWLTAKREGHHVILDGEQ  354 (553)
Q Consensus       327 ~v~~~~segNv~l~~~~~g~l~eLDg~p  354 (553)
                           ++++|+         ++||||||
T Consensus       185 -----~a~~~~---------I~eld~~P  198 (198)
T PF08495_consen  185 -----KAEGNI---------IYELDGRP  198 (198)
T ss_pred             -----EecCCE---------EEEECCcC
Confidence                 888999         99999998

Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].

>PF10442 FIST_C: FIST C domain; InterPro: IPR019494 This entry represents a novel sensory domain, designated FIST C (short for F-box and intracellular signal transduction, C-terminal), which is present in signal transduction proteins from bacteria, archaea and eukaryotes

Probab=99.72  E-value=1.7e-17  Score=150.71  Aligned_cols=97  Identities=24%  Similarity=0.296  Sum_probs=83.1

Q ss_pred             eeeeeeccccccCc-ccceeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHhhhccCCCCccccccccCccCCCcee
Q 008790          391 ITTLAFHGIRGGDQ-EYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVL  469 (553)
Q Consensus       391 vR~l~v~~VlG~D~-e~sI~~g~~I~~G~~vqf~~RD~~aA~~dl~~~~~~lr~l~~~~~~k~~~~~~~~~~~~~~~~p~  469 (553)
                      +|.+     +++|+ +.+|+++.+|++|+.||||.+|++.+.++++++++++       .               ..+|.
T Consensus        37 ir~~-----~~~~~~~gsl~~~~~v~eG~~v~l~~~~~~~~~~~~~~~~~~~-------~---------------~~~p~   89 (136)
T PF10442_consen   37 IRSP-----LAIDPEDGSLTFAGDVPEGSEVQLMEGDPEDIIESAEEALEKA-------P---------------GPPPE   89 (136)
T ss_pred             Eeee-----eEEcCCCCEEEEeeecCCCCEEEEEcCCHHHHHHHHHHHHHhh-------c---------------CCCce
Confidence            7776     99998 5599999999999999999999999998666655433       1               46799


Q ss_pred             EEEEEEeCCCCcCCCCCCccchHhHHhhCCC-CceeeeecccccCC
Q 008790          470 GGFIFSCCGRGNSFFGGLNVDSFPFFENFPS-APLAGIFCGGEIGR  514 (553)
Q Consensus       470 gaLlFSC~GRG~~lfg~~~~E~~~v~e~Lg~-vPlaGFy~~GEIgP  514 (553)
                      ++|+|+|+||...|....+.|++.+++.+|+ +|++||||||||+|
T Consensus        90 ~~l~f~C~~R~~~l~~~~~~e~~~~~~~~~~~~p~~Gf~t~GEi~~  135 (136)
T PF10442_consen   90 GALIFSCIGRRLFLGERFDEELEAFQEILGGDAPFIGFYTYGEIGP  135 (136)
T ss_pred             EEEEEECCCCHHHhCcchHHHHHHHHHHhCCCCCEEEEcccccccc
Confidence            9999999999544444788899999999995 99999999999998

The chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=96.84  E-value=0.00056  Score=51.29  Aligned_cols=36  Identities=28%  Similarity=0.422  Sum_probs=30.5

Q ss_pred             ccHHHHHHHHhhcCccccchhhhhcchhHHHhhhhh
Q 008790           23 DCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSIL   58 (553)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   58 (553)
                      -++|++++||++||..+.+..++|||+|++.|.+.-
T Consensus         6 LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~   41 (48)
T PF00646_consen    6 LPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPR   41 (48)
T ss_dssp             S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHH
T ss_pred             CCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCC
Confidence            468999999999999999999999999999998754

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=96.66  E-value=0.00084  Score=50.60  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=29.8

Q ss_pred             ccHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008790           23 DCEDVLHNILSRLPAKSFASAACVNKSWNCVCNS   56 (553)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (553)
                      ..+|++.+||+.||....+.+++|||.|+++|+.
T Consensus         4 LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~   37 (47)
T PF12937_consen    4 LPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAND   37 (47)
T ss_dssp             S-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTC
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCC
Confidence            3589999999999999999999999999999953

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=96.12  E-value=0.0028  Score=45.32  Aligned_cols=33  Identities=30%  Similarity=0.624  Sum_probs=30.4

Q ss_pred             cHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008790           24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCNS   56 (553)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (553)
                      .+|++.+|+++||....+.+++|||+|+.+|..
T Consensus         2 P~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        2 PDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            479999999999999999999999999999864

>PF10442 FIST_C: FIST C domain; InterPro: IPR019494 This entry represents a novel sensory domain, designated FIST C (short for F-box and intracellular signal transduction, C-terminal), which is present in signal transduction proteins from bacteria, archaea and eukaryotes

Probab=91.56  E-value=0.32  Score=44.06  Aligned_cols=55  Identities=25%  Similarity=0.260  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHcCCCCCceEEE--EEecc-----cCHHHHHHHHHHhcCCCCcEEEeeeeeeecc
Q 008790           75 IALQEVLDKVLLEPIRPHFAIA--NVGRG-----FNMRRTLDFLVKHLGLRTPIILSVVHGVMGR  132 (553)
Q Consensus        75 ~A~~Evv~~~l~e~~~p~~~ia--~~~~~-----~~~~~~l~~i~~~~g~~~plig~~~~Giig~  132 (553)
                      ++.+++++++  ...+|.++|.  |++..     ....+ ++.+++.++.++|++|+.+.|+|++
T Consensus        74 ~~~~~~~~~~--~~~~p~~~l~f~C~~R~~~l~~~~~~e-~~~~~~~~~~~~p~~Gf~t~GEi~~  135 (136)
T PF10442_consen   74 ESAEEALEKA--PGPPPEGALIFSCIGRRLFLGERFDEE-LEAFQEILGGDAPFIGFYTYGEIGP  135 (136)
T ss_pred             HHHHHHHHhh--cCCCceEEEEEECCCCHHHhCcchHHH-HHHHHHHhCCCCCEEEEcccccccc
Confidence            4444444444  3477888888  55551     11333 8889999997799999999999874

The chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].

>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya

Probab=86.12  E-value=4.1  Score=38.71  Aligned_cols=106  Identities=20%  Similarity=0.180  Sum_probs=65.6

Q ss_pred             ccccHH-HHHHHHhhcCccccchhhhhcch-h---------HHHhhhhhcccceeeeec----CCCChhHHHHHHHHHHH
Q 008790           21 LADCED-VLHNILSRLPAKSFASAACVNKS-W---------NCVCNSILSRPRIASACS----FKASAPIALQEVLDKVL   85 (553)
Q Consensus        21 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~k~a~~~S----~~pd~~~A~~Evv~~~l   85 (553)
                      -.+.+. +++.+-+++|-  --..+|.+.- .         ..++--.++...+.+..+    ..-++.++++++++++.
T Consensus        12 ~~~~~~~i~~~l~~~~p~--~~iiG~st~g~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T PF08495_consen   12 EYDEEAKILEALRERLPD--APIIGCSTAGEICGGNEGYSDDGVSLLGFSSSEVRVFASLIDPFSEDPIEAAREALRDLV   89 (198)
T ss_pred             hhhhhHHHHHHHHHHCCC--CcEEEEccCchhCCCcCCCCCccEEEEEecCCcEEEEEEEccccCCCcHHHHHHHHHHHH
Confidence            345555 77777778883  2333443321 0         111122344555555544    45577899999999999


Q ss_pred             cCC-CCCceEEEEE--ecccCHHHHHHHHHHhcCCCCcEEEeeeee
Q 008790           86 LEP-IRPHFAIANV--GRGFNMRRTLDFLVKHLGLRTPIILSVVHG  128 (553)
Q Consensus        86 ~e~-~~p~~~ia~~--~~~~~~~~~l~~i~~~~g~~~plig~~~~G  128 (553)
                      .+. ..|...+.++  +.-.+.+.+++.|......++|++|+.+..
T Consensus        90 ~~~~~~~~~~~l~~~d~~~~~~~~~l~~l~~~~~~~~~i~GG~a~~  135 (198)
T PF08495_consen   90 KSLDSDPSPFLLLFADGLSSSEEELLEGLYSSVGPDIPIFGGSAGD  135 (198)
T ss_pred             hhccccCCcEEEEEeCCCCcCHHHHHHHHHHhcCCCceEEEEECCC
Confidence            975 3323333433  444568889999966677799999988865

Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	553
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 8e-08
 Identities = 82/596 (13%), Positives = 164/596 (27%), Gaps = 189/596 (31%)

Query: 1   MDTEKPSSSKKKKKTIEISSLA-----DC---EDVLHNILSRLPAKSFASAACVNKSWNC 52
           MD E      + K  + +   A     DC   +D+  +ILS                   
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS-----------------KE 49

Query: 53  VCNSILSRPRIASACSF---------KASAPIALQEVLDK---VLLEPIR---------- 90
             + I+      S             +      ++EVL      L+ PI+          
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 91  --------------PHFAIANVGRGFNMRRTLDFLVKHL-GLRTPIILSVVHGVM---GR 132
                           FA  NV R     +    L + L  LR P    ++ G +   G+
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSR----LQPYLKLRQALLELR-PAKNVLIDG-VLGSGK 163

Query: 133 DALTDE-FREVKFQDHEDIGV---NRGICTCG-------QQSGIVLTVGYLPGLKVDAIP 181
             +  +     K Q   D  +   N   C          Q+    +   +       +  
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 182 LLR----RKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQN--------------YTTSV 223
            LR    + E+ ++     Y +  L     ++     ++QN               TT  
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLL-----VLL----NVQNAKAWNAFNLSCKILLTTRF 274

Query: 224 SGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDL-RNVC-GN 281
                 +         +D   +    D   S+          ++      DL R V   N
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSL---L-----LKYLDCRPQDLPREVLTTN 326

Query: 282 PAFISDAVALVFASDKDKP-------HGTGEIQFHLAMSEGVSAIGP---RH--KAVSVR 329
           P      ++++  S +D         H   + +    +   ++ + P   R     +SV 
Sbjct: 327 PR----RLSIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 330 ANHAEGST------WLTAKREGHHVILDGEQILRHIDQLENRF--------PQVELYVGV 375
              A   T      W    +       D   ++   ++L              + +   +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKS------DVMVVV---NKLHKYSLVEKQPKESTISIP-SI 431

Query: 376 TKRRKCSIGSEKS---RLITTLAFHGIRGGDQEYL---YVDGVGIKTGDYFQFYQPDHNA 429
               K  + +E +    ++    ++  +  D + L   Y+D        YF  +   H  
Sbjct: 432 YLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQ-------YFYSHIGHH-- 480

Query: 430 ALAACRNASE---------NIRNL--KLNSSGKGFLGRRDVANSIDRKEVLGGFIF 474
            L    +            + R L  K+      +     + N++ + +    +I 
Sbjct: 481 -LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 68/445 (15%), Positives = 113/445 (25%), Gaps = 159/445 (35%)

Query: 1   MDTEKPSSSKKKKKTIEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNC------VC 54
             T +   S   K  I        +  L  +L   P +            NC      V 
Sbjct: 212 NWTSRSDHSSNIKLRIH-----SIQAELRRLLKSKPYE------------NCLLVLLNVQ 254

Query: 55  NSILSRPRIASACSFKASAPIAL----QEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDF 110
           N      +  +A  F  S  I L    ++V D  L      H ++ +             
Sbjct: 255 N-----AKAWNA--FNLSCKILLTTRFKQVTD-FLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 111 LVKHLGLRT-----------PIILSVVHGVMGRD--ALTDEFREVKFQDHEDIGVNRGIC 157
           L+K+L  R            P  LS++     RD  A  D ++ V       I       
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSII-AESIRDGLATWDNWKHVNCDKLTTI------- 358

Query: 158 TCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAP---PVP------- 207
                  I  ++  L        P   RK          +  + + P    +P       
Sbjct: 359 -------IESSLNVLE-------PAEYRK---------MFDRLSVFPPSAHIPTILLSLI 395

Query: 208 ---MIDQFVMDIQNYTTSVS-----GCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVF 259
              +I   VM + N     S        S + I       +  + +  KL+   +++   
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-----PSIYLE-LKVKLENEYALHRSI 449

Query: 260 VGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAI 319
           V        Y      +    +              D   P+       H+         
Sbjct: 450 VD------HYNI---PKTFDSD--------------DLIPPYLDQYFYSHIG-------- 478

Query: 320 GPRHKAVSVRANHAEGST----------WLTAKREGHHVILDGEQILRHIDQLENRFPQV 369
              H        H E  T          +L  K     +  D          + N   Q+
Sbjct: 479 --HHLK---NIEHPERMTLFRMVFLDFRFLEQK-----IRHDSTA-WNASGSILNTLQQL 527

Query: 370 ELYVGVTKRRKCSIGSEKSRLITTL 394
           + Y    K   C    +  RL+  +
Sbjct: 528 KFY----KPYICDNDPKYERLVNAI 548

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 10 KKKKKTIEISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56
          ++    +   SL D  ++L  I S L        + V K W  + + 
Sbjct: 1  RENFPGVSWDSLPD--ELLLGIFSCLCLPELLKVSGVCKRWYRLASD 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	553
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	97.11
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	95.36
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	91.87
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	91.19
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	87.35
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	84.54
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	82.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	80.06

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=97.11  E-value=0.00021  Score=53.86  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=31.0

Q ss_pred             ccHHHHHHHHhhcCccccchhhhhcchhHHHhh
Q 008790           23 DCEDVLHNILSRLPAKSFASAACVNKSWNCVCN   55 (553)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (553)
                      -.+|++.+||++||....+.++||||.|+.+++
T Consensus        12 LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A           12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             SCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            468999999999999999999999999999886

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=95.36  E-value=0.0055  Score=62.67  Aligned_cols=34  Identities=24%  Similarity=0.391  Sum_probs=31.3

Q ss_pred             cccHHHHHHHHhhcCccccc-hhhhhcchhHHHhh
Q 008790           22 ADCEDVLHNILSRLPAKSFA-SAACVNKSWNCVCN   55 (553)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   55 (553)
                      ...+|||..||+|||+.+.+ .++||||.|+.+.+
T Consensus        53 ~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~   87 (297)
T 2e31_A           53 ELPEPLLLRVLAELPATELVQACRLVCLRWKELVD   87 (297)
T ss_dssp             SSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred             hCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence            34789999999999999999 99999999998875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=91.87  E-value=0.057  Score=54.95  Aligned_cols=30  Identities=43%  Similarity=0.555  Sum_probs=28.1

Q ss_pred             HHHHHHHhhcCccccchhhhhcchhHHHhh
Q 008790           26 DVLHNILSRLPAKSFASAACVNKSWNCVCN   55 (553)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (553)
                      +|+..||+.|++.+++.++||||.|+.+++
T Consensus        21 ~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~   50 (435)
T 1p22_A           21 HIAENILSYLDAKSLCAAELVCKEWYRVTS   50 (435)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence            499999999999999999999999998775

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=91.19  E-value=0.071  Score=54.12  Aligned_cols=33  Identities=15%  Similarity=0.276  Sum_probs=31.0

Q ss_pred             cHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008790           24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCNS   56 (553)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (553)
                      .++|+..||+.||+.+++.+++|||.||++++.
T Consensus        19 p~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           19 PFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             CHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999875

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=87.35  E-value=0.19  Score=51.01  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=30.1

Q ss_pred             cHHHHHHHHhhcCccccchhhhhcchhHHHhh
Q 008790           24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCN   55 (553)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (553)
                      .++++..||+.|++.+.+.++||||.|+.+|+
T Consensus        23 p~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~   54 (445)
T 2ovr_B           23 PKELALYVLSFLEPKDLLQAAQTCRYWRILAE   54 (445)
T ss_dssp             CHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcC
Confidence            58999999999999999999999999999886

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=84.54  E-value=0.32  Score=49.93  Aligned_cols=33  Identities=27%  Similarity=0.311  Sum_probs=30.8

Q ss_pred             cHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008790           24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCNS   56 (553)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (553)
                      ..|++++||+-|++...+.++||||.|+.+++.
T Consensus         9 P~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D   41 (312)
T 3l2o_B            9 PIDVQLYILSFLSPHDLCQLGSTNHYWNETVRD   41 (312)
T ss_dssp             CHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTC
T ss_pred             CHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcc
Confidence            479999999999999999999999999999874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=82.93  E-value=0.43  Score=46.76  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=30.8

Q ss_pred             ccHHHHHHHHhhcCccccchhhhhcchhHHHhh
Q 008790           23 DCEDVLHNILSRLPAKSFASAACVNKSWNCVCN   55 (553)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (553)
                      -.+|++..|++.||......++.|||.|+.+|.
T Consensus        12 LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~   44 (336)
T 2ast_B           12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (336)
T ss_dssp             SCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHT
T ss_pred             CCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999983

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=80.06  E-value=0.5  Score=50.11  Aligned_cols=42  Identities=24%  Similarity=0.419  Sum_probs=33.2

Q ss_pred             ceEEeecccccHHHHHHHHhhc-CccccchhhhhcchhHHHhh
Q 008790           14 KTIEISSLADCEDVLHNILSRL-PAKSFASAACVNKSWNCVCN   55 (553)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   55 (553)
                      |.+..++..-.+|++..||+.| |....+.++.|||+|+.+..
T Consensus         7 ~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~   49 (592)
T 3ogk_B            7 KRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDS   49 (592)
T ss_dssp             -----CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHH
T ss_pred             hhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhh
Confidence            4456666677899999999999 89999999999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	553
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	4e-07
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	1e-05
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	5e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-04

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (106), Expect = 4e-07
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 25 EDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56
          +++L  I S L        + V K W  + + 
Sbjct: 6  DELLLGIFSCLCLPELLKVSGVCKRWYRLASD 37

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 18 ISSL--ADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56
          I++L     + +  NILS L AKS  +A  V K W  V + 
Sbjct: 11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSD 51

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 5e-05
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 18 ISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56
          IS L    ++   +LS L  K    AA   + W  +   
Sbjct: 19 ISLLPK--ELALYVLSFLEPKDLLQAAQTCRYWRILAED 55

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 18 ISSLADCEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56
          I+SL    ++   I + L  +   ++  V+++WN +   
Sbjct: 6  ITSLPF--EISLKIFNYLQFEDIINSLGVSQNWNKIIRK 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	553
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	97.7
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.71
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	96.5
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	96.38

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=7e-06  Score=58.17  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=31.6

Q ss_pred             ccHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008790           23 DCEDVLHNILSRLPAKSFASAACVNKSWNCVCNS   56 (553)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (553)
                      ..+|++++||+.||..+.+.++||||.||++|+.
T Consensus         4 LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~   37 (41)
T d1fs1a1           4 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD   37 (41)
T ss_dssp             SCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTC
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence            3689999999999999999999999999999873

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00022  Score=58.42  Aligned_cols=33  Identities=21%  Similarity=0.317  Sum_probs=31.4

Q ss_pred             cHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008790           24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCNS   56 (553)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (553)
                      .+||++.||+.||+.+++.++||||.|+.+|+.
T Consensus        23 P~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~   55 (102)
T d2ovrb1          23 PKELALYVLSFLEPKDLLQAAQTCRYWRILAED   55 (102)
T ss_dssp             CHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTC
T ss_pred             CHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC
Confidence            689999999999999999999999999999875

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.00041  Score=56.99  Aligned_cols=33  Identities=15%  Similarity=0.276  Sum_probs=30.8

Q ss_pred             cHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008790           24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCNS   56 (553)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (553)
                      .++|+..||+.|++.+.+.+++|||+|+++|+.
T Consensus        10 P~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~   42 (100)
T d1nexb1          10 PFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   42 (100)
T ss_dssp             CHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHT
T ss_pred             CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Confidence            579999999999999999999999999999863

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.00055  Score=57.70  Aligned_cols=38  Identities=39%  Similarity=0.545  Sum_probs=33.4

Q ss_pred             eeccc--ccHHHHHHHHhhcCccccchhhhhcchhHHHhh
Q 008790           18 ISSLA--DCEDVLHNILSRLPAKSFASAACVNKSWNCVCN   55 (553)
Q Consensus        18 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (553)
                      |+.|-  ..++|+.+||+-|++.+++.++||||.|+.+|+
T Consensus        11 i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~   50 (118)
T d1p22a1          11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTS   50 (118)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Confidence            45554  357899999999999999999999999999987