Citrus Sinensis ID: 008797

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550---

MTDPSDEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEATKPSVPSTTTASGGKRPASINGSGNTASKKGRGSGGLQNQLVNRALEGISRGGRGGIRGRGRGWGARGRGRGYR

ccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

ccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcHcHcccccHHHHHHHHHHHHHcHcccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHcccEEEcccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccHHHccEEcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

MTDPSDEAKQIEKLYEFGERLNeakdksqnvkDYEGIIEAAKTSLKAKQLAAQLIPRFFkffpdlssrAVDAHLDLIEEEELGVRVQAirglplfckdtpeYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHigsvdepstdeFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLslfgekapTERMKELIGIIEgqadldaqfnvsdadhIDRLISCLYMALpfflrgasgskFLNYLNKHiipvfdklpEERKLDLLKALAeispyttpqdsrqiLPSVAVLLKKYmplrktggeemnFTYVECLLYTFHhlahkapnatnslcgykivtgqpsdrlgedfsDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIKTQKqntttglrtcnnilamskplhsktpsfigdksvnlswkeatkpsvpstttasggkrpasingsgntaskkgrgsgglqNQLVNRALEgisrggrggirgrgrgwgargrgrgyr

mtdpsdeakQIEKLYEFGErlneakdksqnvkDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKhigsvdepstdeFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEispyttpqdsrqilPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKtdeakekiktqkqntttglrtcNNILAMSKPLHSKTPSFIGDKSVNLswkeatkpsvpstttasggkrpasingsgntaskkgrgsgglqNQLVNRAlegisrggrggirgrgrgwgargrgrgyr

*********************************YEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTR*****************************************TCNNIL****************************************************************************************************

************KLYEFGER*************Y*GIIE*********QLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVF*************ERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFG*****ERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKK*****************************NTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSW*****************************************************************************

********KQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWK*******************ASINGS************GLQNQLVNRALEGISRGGRGGIRGRGR************

*****DEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEA**************************************************************************

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MTDPSDEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEATKPSVPSTTTASGGKRPASINGSGNTASKKGRGSGGLQNQLVNRALEGISRGGRGGIRGRGRGWGARGRGRGYR

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		553	2.2.26 [Sep-21-2011]
Q5ZMW3		523	Apoptosis inhibitor 5 OS=	yes	no	0.797	0.843	0.342	4e-58
Q5R644		504	Apoptosis inhibitor 5 OS=	yes	no	0.851	0.934	0.335	5e-57
O35841		504	Apoptosis inhibitor 5 OS=	yes	no	0.851	0.934	0.333	7e-57
Q9BZZ5		524	Apoptosis inhibitor 5 OS=	yes	no	0.830	0.875	0.334	1e-56
Q6DDM4		524	Apoptosis inhibitor 5-A O	N/A	no	0.804	0.849	0.325	4e-54
Q7ZY79		523	Apoptosis inhibitor 5-B O	N/A	no	0.835	0.883	0.321	3e-53
Q9V431		536	Apoptosis inhibitor 5 hom	yes	no	0.815	0.841	0.301	5e-48
Q54CL0		606	Apoptosis inhibitor 5 hom	yes	no	0.710	0.648	0.264	8e-33

>sp\|Q5ZMW3\|API5_CHICK Apoptosis inhibitor 5 OS=Gallus gallus GN=API5 PE=2 SV=1	Back alignment and function desciption

 Score =  226 bits (575), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 178/520 (34%), Positives = 261/520 (50%), Gaps = 79/520 (15%)

Query: 11  IEKLYEFGERLNEAKDKSQNVKD-YEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRA 69
           +E+LY     L +A + +   KD Y+ I++  K   K K+LAAQ IP+FFK FP+L+  A
Sbjct: 4   VEELYRNYGILADATETAGQHKDAYQVILDGVKGGAKEKRLAAQFIPKFFKHFPELADSA 63

Query: 70  VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKAL 129
           ++A LDL E+E++ +R QAI+ LP F   T + L ++ DIL QLL +++  E + V+ AL
Sbjct: 64  INAQLDLCEDEDVSIRRQAIKELPQFA--TGDNLPRVADILTQLLQSDDSAEFNLVNNAL 121

Query: 130 MSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERH 189
           +S+ + D K +L  LF  I        ++ +RE+ + F+  K+  L  E+L   +E+E  
Sbjct: 122 LSIFKMDAKGTLGGLFSQIL-----QGEDIVRERAIKFLSTKLKTLPEEVLT--KEVEEF 174

Query: 190 ITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFN 249
           I    KKV   LEDVTG EF +FM  L  L      +  +++ EL+     QADL+  FN
Sbjct: 175 ILAESKKV---LEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVA---EQADLEQTFN 228

Query: 250 VSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKL--PEER---KLDLLK 304
            SD D +DRL+ C   A+P F +    +KF+ Y  +H++P    L  P E    +L++LK
Sbjct: 229 PSDPDCVDRLLQCTRQAVPLFSKNVHSTKFVTYFCEHVLPNLSALTTPVEGLDIQLEVLK 288

Query: 305 ALAEISPYTTPQDSRQILPSVAVLLKK---YMPL--------RKTGGEE--MNFTYVECL 351
            LAE+S +    D  ++  ++  L  K   YMPL           GGEE  + F+YVECL
Sbjct: 289 LLAEMSSFCG--DMEKLESNLKKLFDKLLEYMPLPPEEAENGENAGGEEPKLQFSYVECL 346

Query: 352 LYTFHHLAHKAPN-ATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMK 410
           LY+FH L  K P+  T  L   K+                 KDF  RL       +  ++
Sbjct: 347 LYSFHQLGRKLPDFLTAKLNAEKL-----------------KDFKIRLQYFARGLQVYIR 389

Query: 411 KLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDK 470
           +L   LA   K   A KT+E K K+          L+  NNI  + K L    PS+    
Sbjct: 390 QLR--LALQGKTGEALKTEENKIKV--------VALKITNNINVLIKDLFHIPPSY--KS 437

Query: 471 SVNLSWK-------------EATKPSVPSTTTASGGKRPA 497
           +V LSWK             E T  S P    ++G KR A
Sbjct: 438 TVTLSWKPVQKADANQKRTSEDTTSSSPPKKASAGPKRDA 477

Antiapoptotic factor that may have a role in protein assembly.
Gallus gallus (taxid: 9031)

>sp\|Q5R644\|API5_PONAB Apoptosis inhibitor 5 OS=Pongo abelii GN=API5 PE=2 SV=1	Back alignment and function description

>sp\|O35841\|API5_MOUSE Apoptosis inhibitor 5 OS=Mus musculus GN=Api5 PE=2 SV=2	Back alignment and function description

>sp\|Q9BZZ5\|API5_HUMAN Apoptosis inhibitor 5 OS=Homo sapiens GN=API5 PE=1 SV=3	Back alignment and function description

>sp\|Q6DDM4\|API5A_XENLA Apoptosis inhibitor 5-A OS=Xenopus laevis GN=api5-a PE=2 SV=1	Back alignment and function description

>sp\|Q7ZY79\|API5B_XENLA Apoptosis inhibitor 5-B OS=Xenopus laevis GN=api5-b PE=2 SV=1	Back alignment and function description

>sp\|Q9V431\|API5_DROME Apoptosis inhibitor 5 homolog OS=Drosophila melanogaster GN=Aac11 PE=1 SV=1	Back alignment and function description

>sp\|Q54CL0\|API5_DICDI Apoptosis inhibitor 5 homolog OS=Dictyostelium discoideum GN=api5 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		553
449519826		557	PREDICTED: apoptosis inhibitor 5-like [C	0.954	0.947	0.839	0.0
359483518		550	PREDICTED: apoptosis inhibitor 5-like [V	0.949	0.954	0.850	0.0
449433776		554	PREDICTED: apoptosis inhibitor 5-like [C	0.949	0.947	0.839	0.0
224116312		543	predicted protein [Populus trichocarpa]	0.940	0.957	0.846	0.0
224079137		539	predicted protein [Populus trichocarpa]	0.936	0.961	0.843	0.0
255563042		554	Apoptosis inhibitor, putative [Ricinus c	0.947	0.945	0.821	0.0
225461593		564	PREDICTED: apoptosis inhibitor 5 [Vitis	0.943	0.925	0.791	0.0
356521430		550	PREDICTED: apoptosis inhibitor 5-like [G	0.945	0.950	0.815	0.0
356548640		551	PREDICTED: apoptosis inhibitor 5-like [G	0.945	0.949	0.811	0.0
18403429		553	Apoptosis inhibitory protein 5 (API5) [A	0.936	0.936	0.772	0.0

>gi\|449519826\|ref\|XP_004166935.1\| PREDICTED: apoptosis inhibitor 5-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/530 (83%), Positives = 487/530 (91%), Gaps = 2/530 (0%)

Query: 1   MTDPSDEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFK 60
           MT+ S++A+ IEKLYEFGERLNEA+DKSQNVKDY+GII+AAKTS KAKQLAAQLIPRFFK
Sbjct: 1   MTELSEDAQHIEKLYEFGERLNEAEDKSQNVKDYQGIIDAAKTSTKAKQLAAQLIPRFFK 60

Query: 61  FFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIV 120
           FFP LS  A+DAH+DLIEEEEL +RVQAIRGLPLFCKDTPE + KIVDILVQ+LA+EE V
Sbjct: 61  FFPSLSGPAIDAHIDLIEEEELAIRVQAIRGLPLFCKDTPENIGKIVDILVQILASEEFV 120

Query: 121 ERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELL 180
           ERDAVHKALM+LLRQDVKASL+ALFKHIGSVDEP+TDE IREKVLSFIR+KVFP+K+E+L
Sbjct: 121 ERDAVHKALMALLRQDVKASLSALFKHIGSVDEPTTDEVIREKVLSFIREKVFPIKSEIL 180

Query: 181 KPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEG 240
           KPQEEMERHITDLIK + QSLEDVTGAEFRMFMDFLKSLS+FGEKAP ER+KELIGIIEG
Sbjct: 181 KPQEEMERHITDLIKSLFQSLEDVTGAEFRMFMDFLKSLSIFGEKAPPERLKELIGIIEG 240

Query: 241 QADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKL 300
           QADLDAQFNVSDADHIDRLISCL+MA+PF +RGAS  KFL+YLNKH+IPVF+KLPEERKL
Sbjct: 241 QADLDAQFNVSDADHIDRLISCLFMAIPFVVRGASSCKFLSYLNKHVIPVFEKLPEERKL 300

Query: 301 DLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAH 360
           DLLKALAE SPYTTPQDSRQ LPSV  LLKKYMP RKT GEEMNFTYVECLLYTFHHLAH
Sbjct: 301 DLLKALAEFSPYTTPQDSRQFLPSVVQLLKKYMPGRKT-GEEMNFTYVECLLYTFHHLAH 359

Query: 361 KAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHN 420
           K PNATNSLCGYKIVTGQPSDRLGEDFSD YKDFTERLT VEDLTRAT+KKLTQG+ +HN
Sbjct: 360 KVPNATNSLCGYKIVTGQPSDRLGEDFSDNYKDFTERLTNVEDLTRATIKKLTQGMDEHN 419

Query: 421 KEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEAT 480
           K MAAAK+DEAK  IKTQ+QN  TGLRTCNNILAM KPLH+K P+FIGD S+NLSWKE T
Sbjct: 420 KAMAAAKSDEAKSNIKTQQQNAKTGLRTCNNILAMGKPLHAKAPTFIGDNSINLSWKEVT 479

Query: 481 KPSVPSTTTASGGKRPA-SINGSGNTASKKGRGSGGLQNQLVNRALEGIS 529
           K  VP+TT+A+GGKRPA + NGS N  SKKGRGSGGLQNQLVNRALEG+S
Sbjct: 480 KTQVPTTTSAAGGKRPAIAANGSNNMPSKKGRGSGGLQNQLVNRALEGLS 529

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359483518\|ref\|XP_002272702.2\| PREDICTED: apoptosis inhibitor 5-like [Vitis vinifera] gi\|297740462\|emb\|CBI30644.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449433776\|ref\|XP_004134673.1\| PREDICTED: apoptosis inhibitor 5-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224116312\|ref\|XP_002331951.1\| predicted protein [Populus trichocarpa] gi\|222874728\|gb\|EEF11859.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224079137\|ref\|XP_002305763.1\| predicted protein [Populus trichocarpa] gi\|222848727\|gb\|EEE86274.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255563042\|ref\|XP_002522525.1\| Apoptosis inhibitor, putative [Ricinus communis] gi\|223538216\|gb\|EEF39825.1\| Apoptosis inhibitor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225461593\|ref\|XP_002282903.1\| PREDICTED: apoptosis inhibitor 5 [Vitis vinifera] gi\|302142932\|emb\|CBI20227.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356521430\|ref\|XP_003529359.1\| PREDICTED: apoptosis inhibitor 5-like [Glycine max]	Back alignment and taxonomy information

>gi\|356548640\|ref\|XP_003542708.1\| PREDICTED: apoptosis inhibitor 5-like [Glycine max]	Back alignment and taxonomy information

>gi|18403429|ref|NP_565777.1| Apoptosis inhibitory protein 5 (API5) [Arabidopsis thaliana] gi|20196906|gb|AAB67622.2| expressed protein [Arabidopsis thaliana] gi|21553359|gb|AAM62452.1| unknown [Arabidopsis thaliana] gi|25083323|gb|AAN72062.1| expressed protein [Arabidopsis thaliana] gi|34098899|gb|AAQ56832.1| At2g34040 [Arabidopsis thaliana] gi|330253815|gb|AEC08909.1| Apoptosis inhibitory protein 5 (API5) [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		553
TAIR\|locus:2055481		553	AT2G34040 [Arabidopsis thalian	0.936	0.936	0.781	9.6e-215
TAIR\|locus:2029994		556	AT1G29030 "AT1G29030" [Arabido	0.931	0.926	0.735	2.2e-201
MGI\|MGI:1888993		504	Api5 "apoptosis inhibitor 5" [	0.613	0.672	0.366	6.1e-58
RGD\|1309772		504	Api5 "apoptosis inhibitor 5" [	0.613	0.672	0.366	9.9e-58
TAIR\|locus:2090699		805	AT3G19515 "AT3G19515" [Arabido	0.406	0.279	0.506	1.4e-53
UNIPROTKB\|Q5ZMW3		523	API5 "Apoptosis inhibitor 5" [	0.877	0.927	0.325	6.3e-53
UNIPROTKB\|E2RHB3		524	API5 "Uncharacterized protein"	0.613	0.646	0.369	1.1e-50
UNIPROTKB\|F1SHH7		524	API5 "Uncharacterized protein"	0.613	0.646	0.369	1.1e-50
UNIPROTKB\|G3V1C3		510	API5 "Apoptosis inhibitor 5" [	0.613	0.664	0.369	1.7e-50
UNIPROTKB\|Q9BZZ5		524	API5 "Apoptosis inhibitor 5" [	0.613	0.646	0.369	1.7e-50

TAIR\|locus:2055481 AT2G34040 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2075 (735.5 bits), Expect = 9.6e-215, P = 9.6e-215
 Identities = 412/527 (78%), Positives = 458/527 (86%)

Query:     5 SDEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPD 64
             S+E +QIEKLYEF ERLN +KDKSQNV+DYEGII+ +KTS+KAKQLA+QLIPR+FKFFP 
Sbjct:     6 SEEVQQIEKLYEFSERLNASKDKSQNVEDYEGIIKMSKTSMKAKQLASQLIPRYFKFFPS 65

Query:    65 LSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDA 124
             LS+ A DAH+D I++ +LGVRVQAIRGLPLFCKDTP+ LSKIVD+LVQLL  EE VERDA
Sbjct:    66 LSTEAFDAHMDCIDDGDLGVRVQAIRGLPLFCKDTPDILSKIVDVLVQLLNTEEPVERDA 125

Query:   125 VHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQE 184
             VHKALMSLLRQD KAS TALF H G    P+TD+ IREKVL+FIRDKV PLK ELLKPQE
Sbjct:   126 VHKALMSLLRQDPKASSTALFTHAGVT--PTTDDQIREKVLNFIRDKVIPLKGELLKPQE 183

Query:   185 EMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADL 244
             EMERHITDLIK   QSLEDVTG EF+MFMDFL SLS+FG KAP ERM+EL+ IIEGQADL
Sbjct:   184 EMERHITDLIK---QSLEDVTGGEFKMFMDFLTSLSIFGGKAPPERMQELVEIIEGQADL 240

Query:   245 DAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLK 304
             +AQF  SD DHIDRLISCL +ALPFF RGA  S+FL YLNKHIIPVFDKLPEERKLDLLK
Sbjct:   241 NAQFEFSDTDHIDRLISCLQLALPFFARGAPSSRFLIYLNKHIIPVFDKLPEERKLDLLK 300

Query:   305 ALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPN 364
             ALA+ISPYTT Q++RQ+LPS+  LLK YMP RKTG EEMNFTYVECLLY FHHLAHK PN
Sbjct:   301 ALADISPYTTAQEARQLLPSIVELLKIYMPARKTG-EEMNFTYVECLLYAFHHLAHKVPN 359

Query:   365 ATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMA 424
             ATNSLCGYKIVTGQPSDRLGEDFS+  KDFTERLT VEDLT+ATMKKLTQG+ +HNK M+
Sbjct:   360 ATNSLCGYKIVTGQPSDRLGEDFSELNKDFTERLTIVEDLTKATMKKLTQGMTEHNKAMS 419

Query:   425 AAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEATKPSV 484
             AAKTDE K  IKT++QNTTTGLRTCNNILAM+KPLH+K P FIGD ++NLSWKEATKP +
Sbjct:   420 AAKTDEEKASIKTKRQNTTTGLRTCNNILAMTKPLHAKVPPFIGDTNLNLSWKEATKP-L 478

Query:   485 PSTTTASGGKRPA-SINGSGNT-ASKKGRGSGGLQNQLVNRALEGIS 529
              STTT  GGKRPA S NGSGN  A+KKGRGSG +QNQLVN+A EGIS
Sbjct:   479 ASTTTTIGGKRPANSNNGSGNNVAAKKGRGSGTMQNQLVNKAFEGIS 525

GO:0005634 "nucleus" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR\|locus:2029994 AT1G29030 "AT1G29030" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

MGI\|MGI:1888993 Api5 "apoptosis inhibitor 5" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1309772 Api5 "apoptosis inhibitor 5" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

TAIR\|locus:2090699 AT3G19515 "AT3G19515" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZMW3 API5 "Apoptosis inhibitor 5" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RHB3 API5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SHH7 API5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V1C3 API5 "Apoptosis inhibitor 5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9BZZ5 API5 "Apoptosis inhibitor 5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BZZ5	API5_HUMAN	No assigned EC number	0.3345	0.8300	0.8759	yes	no
Q5R644	API5_PONAB	No assigned EC number	0.3351	0.8517	0.9345	yes	no
Q9V431	API5_DROME	No assigned EC number	0.3019	0.8155	0.8414	yes	no
O35841	API5_MOUSE	No assigned EC number	0.3333	0.8517	0.9345	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		553
pfam05918		543	pfam05918, API5, Apoptosis inhibitory protein 5 (A	0.0

>gnl\|CDD\|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5)	Back alignment and domain information

 Score =  765 bits (1976), Expect = 0.0
 Identities = 355/548 (64%), Positives = 411/548 (75%), Gaps = 15/548 (2%)

Query: 10  QIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRA 69
            IEKLYEF ERL+E+ DKSQNV DYEGII+A+KT+ K KQLA+QLIPR+FKFFP L++ A
Sbjct: 1   NIEKLYEFYERLSESGDKSQNVDDYEGIIKASKTTSKEKQLASQLIPRYFKFFPSLATEA 60

Query: 70  VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKAL 129
            DA  DL ++++ GVRVQAIRGLPLFCKDTP+  SKI D+LVQLL  EE VERDAVHKAL
Sbjct: 61  FDAQFDLCDDDDTGVRVQAIRGLPLFCKDTPDATSKIGDVLVQLLNTEEPVERDAVHKAL 120

Query: 130 MSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERH 189
           MSL+RQD KAS+TALF+HI +    +TDE IREKVL FIRDKV PLK ELLKPQ+EMERH
Sbjct: 121 MSLIRQDTKASITALFQHISAT--LTTDEQIREKVLKFIRDKVLPLKGELLKPQKEMERH 178

Query: 190 ITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFN 249
           ITDLIKK   SL+DVTG EF MFMDFL SLS+FG KAP ERM+EL+ IIEGQADL+  F 
Sbjct: 179 ITDLIKK---SLQDVTGDEFHMFMDFLGSLSIFGGKAPIERMQELVEIIEGQADLNNTFI 235

Query: 250 VSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEI 309
             D + ++R I C   A P+F RGA  S FL YLNK I+P FD LPEERKL LLKALAE+
Sbjct: 236 AVDDEVVERFIQCASAAAPYFSRGAPSSAFLAYLNKKILPTFDMLPEERKLRLLKALAEM 295

Query: 310 SPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSL 369
           SPYTT QD+RQ LPS+  LL +YMPL  T      F++ ECLLY  H L  K PNATNSL
Sbjct: 296 SPYTTAQDARQRLPSIVNLLLEYMPLGDT-PPSFQFSHAECLLYALHTLGKKHPNATNSL 354

Query: 370 CGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTD 429
           CGYKIVTGQPSDRLGEDFS+  KDFTERLT VEDLT+ATMKKLTQG+++H+K M+ AKTD
Sbjct: 355 CGYKIVTGQPSDRLGEDFSEKNKDFTERLTYVEDLTKATMKKLTQGMSEHSKAMSTAKTD 414

Query: 430 EAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEATKPSVPSTTT 489
           E KE++KT++Q TTTGLRTCNNILAM+K L    P F  D ++ LSW       +     
Sbjct: 415 EEKEELKTKEQLTTTGLRTCNNILAMTKDLFHSPPIFKHDLAIVLSWIVPKNNKL-GKPI 473

Query: 490 ASGGKRPASINGSG-NTASKKGRGSGGLQNQLVNRALEGISR-GGRGGIRGRGRGWGAR- 546
             GGKRPA  NG G N  +KK R S   Q Q VN++ EGIS+ G   G RGR RG G   
Sbjct: 474 TFGGKRPA--NGKGNNVPAKKSRPS-NDQKQYVNKSGEGISKVGQSYGGRGRTRGRGRGG 530

Query: 547 --GRGRGY 552
             GRGRGY
Sbjct: 531 GGGRGRGY 538

This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterized by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in human chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors. Length = 543

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		553
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	100.0
KOG2213		460	consensus Apoptosis inhibitor 5/fibroblast growth	100.0
KOG2213		460	consensus Apoptosis inhibitor 5/fibroblast growth	98.84
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.81
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.82
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	97.81
PTZ00429		746	beta-adaptin; Provisional	97.63
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	97.58
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.44
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	96.38
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.36
PRK09687		280	putative lyase; Provisional	96.32
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	96.23
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	96.2
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	96.18
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	95.89
PTZ00429		746	beta-adaptin; Provisional	95.87
PRK09687		280	putative lyase; Provisional	95.76
KOG3973		465	consensus Uncharacterized conserved glycine-rich p	95.4
KOG3973		465	consensus Uncharacterized conserved glycine-rich p	95.3
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	95.2
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	94.85
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	94.35
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	94.26
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	94.15
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	94.05
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	93.48
PF01603		409	B56: Protein phosphatase 2A regulatory B subunit (	92.81
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	92.67
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	91.76
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	91.26
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	91.09
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	90.87
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	90.51
PF05804		708	KAP: Kinesin-associated protein (KAP)	90.39
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	90.38
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	89.86
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	89.68
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	89.42
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	88.77
PF13001		501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	88.43
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	88.27
KOG0212		675	consensus Uncharacterized conserved protein [Funct	87.46
cd06561		197	AlkD_like A new structural DNA glycosylase. This d	87.25
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	86.78
COG5096		757	Vesicle coat complex, various subunits [Intracellu	86.58
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	86.57
PF08713		213	DNA_alkylation: DNA alkylation repair enzyme; Inte	84.37
KOG2945		365	consensus Predicted RNA-binding protein [General f	84.31
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	82.09
KOG2259		823	consensus Uncharacterized conserved protein [Funct	82.06
KOG3428		109	consensus Small nuclear ribonucleoprotein SMD1 and	81.6
COG5096		757	Vesicle coat complex, various subunits [Intracellu	81.59
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	81.05
smart00543		200	MIF4G Middle domain of eukaryotic initiation facto	80.48
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	80.26

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

Probab=100.00  E-value=3.5e-162  Score=1312.66  Aligned_cols=534  Identities=56%  Similarity=0.882  Sum_probs=353.4

Q ss_pred             HHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHh
Q 008797           10 QIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAI   89 (553)
Q Consensus        10 ~ie~LY~~~~~L~~akdk~~~~~~y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~ai   89 (553)
                      +||+||++||||++|+|+++|+++|++||+++||++++|+|||||||||||+||+|+++||||++|||||||++||+|||
T Consensus         1 ~ie~lY~~~~~L~~a~d~~~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~ai   80 (556)
T PF05918_consen    1 NIEKLYENYEILADAKDKSQHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAI   80 (556)
T ss_dssp             -HHHHHHHHHHHHHTGGGGGGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHH
T ss_pred             CHHHHHHHHhHhhcCCCcccCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797           90 RGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR  169 (553)
Q Consensus        90 k~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~  169 (553)
                      |+||.|||+||||++||||||+|||||||++|+++|++||++||++||++||++||+||.++  +++||.+|||+|+||+
T Consensus        81 k~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~--~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen   81 KGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS--KSGDEQVRERALKFLR  158 (556)
T ss_dssp             HHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----HS-HHHHHHHHHHHH
T ss_pred             HhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--ccCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999853  4678999999999999


Q ss_pred             hhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCC-CchhHHHHHHHHHHHhhhccccC
Q 008797          170 DKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEK-APTERMKELIGIIEGQADLDAQF  248 (553)
Q Consensus       170 ~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~-s~~gr~qeLv~~i~eqa~Ld~~f  248 (553)
                      +||++++.++++|++|+|++|+++|||   +|+|||++||++||++|++|++|+.. ++.|| |+||++|.+||+||++|
T Consensus       159 ~kl~~l~~~~~~p~~E~e~~i~~~ikk---vL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~-qeLv~ii~eQa~Ld~~f  234 (556)
T PF05918_consen  159 EKLKPLKPELLTPQKEMEEFIVDEIKK---VLQDVTAEEFELFMSLLKSLKIYGGKQTIEGR-QELVDIIEEQADLDQPF  234 (556)
T ss_dssp             HHGGGS-TTTS---HHHHHHHHHHHHH---HCTT--HHHHHHHHHHHHTSGG---GSSHHHH-HHHHHHHHHHHTTTS--
T ss_pred             HHHhhCcHHHhhchHHHHHHHHHHHHH---HHHhccHHHHHHHHHHHHhCccccccCChHHH-HHHHHHHHHHhccCCCC
Confidence            999999999999999999999999999   99999999999999999999998644 45555 99999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhhhhhccCCchhhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHH
Q 008797          249 NVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVL  328 (553)
Q Consensus       249 ~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~  328 (553)
                      +++|+++|||+|+|+++|+|||+++++|++||+|||++|||+|++||++.|+++||+|||+||||++++++++||+||++
T Consensus       235 ~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~  314 (556)
T PF05918_consen  235 DPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQL  314 (556)
T ss_dssp             -SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhhccCcccccCCCCCcCCcChhhhHHHHHHHHHHHHHHHHHH
Q 008797          329 LKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRAT  408 (553)
Q Consensus       329 L~~~mP~~~~~~~~l~fs~vEcLL~afh~L~~k~P~~~~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~q~y  408 (553)
                      |++|||.+.+ +|++||||||||||+||+||+|+|++++++||||+||||||||+|+|++++++|||+|||||++++|+|
T Consensus       315 L~~ymP~~~~-~~~l~fs~vEcLL~afh~La~k~p~~~~~lCgyk~vtgQpsd~~~~~~~~~~kdf~~RL~yl~~~~q~y  393 (556)
T PF05918_consen  315 LKKYMPSKKT-EPKLQFSYVECLLYAFHQLARKSPNSLNFLCGYKIVTGQPSDRYGEDDAEKLKDFRERLQYLARGTQAY  393 (556)
T ss_dssp             HHTTS-----------HHHHHHHHHHHHHHHTT-THHHH---------------------TTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCC-CCcccchHhhHHHHHHHHHhhhCcchhhhHhhhcccccccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998764 899999999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhHhhcCChHHHHHHHhhhccchhhhhhhccHHHHhhhhhcCCCCccCCCccccccccccCCCCCC--
Q 008797          409 MKKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEATKPSVPS--  486 (553)
Q Consensus       409 ikkl~~~l~~~~K~~~~~k~ee~k~k~~~~~q~~~~aL~~~~NI~~li~~L~~~pPsf~~~~~i~lSW~~~~k~~~~~--  486 (553)
                      ||+|+++|.+|+|+++++|+|+++.++++++|++++|||||+||++||++|||+||+|+++.+||+||++++++...+  
T Consensus       394 ikkl~~~l~~~~k~~~~~k~~k~~~~lk~~~q~~~~aLkt~~NI~~lik~L~~~pPsf~~~~~itlSWk~~~~~~~~k~~  473 (556)
T PF05918_consen  394 IKKLKQALSEHNKAMSAAKTDKTKAELKTEEQIKVTALKTTNNILALIKDLFHNPPSFKSTKNITLSWKEAKKPKLGKKH  473 (556)
T ss_dssp             HHHHHHHH-----------TT--CCHHCSHHHHHHHHHHHHHHHHHHHCC----------------TTS-----------
T ss_pred             HHHHHHHhhhhcccccccCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCCcccccccccceeeeeccchhhcccc
Confidence            999999999999999999999999999998999999999999999999999999999999656999999988743222  


Q ss_pred             ----------CCCCCCCCCCCcCCCCC-CcccccCCCCCCcchhhhhhhhcCCCCCC-----CCCCCCcccC-CCC--CC
Q 008797          487 ----------TTTASGGKRPASINGSG-NTASKKGRGSGGLQNQLVNRALEGISRGG-----RGGIRGRGRG-WGA--RG  547 (553)
Q Consensus       487 ----------~~~~~~gkr~~~~~g~~-~~~~~~gr~~~~~~~~~~~~~~~g~~~~~-----~~g~rgrgr~-~g~--~g  547 (553)
                                +.+..+|||++  ||.+ |...++||+++ +||+.++++..|.+++|     |||+|||||| |||  ||
T Consensus       474 ~~~~~~~~~~~~~~~~~k~~~--~g~~~~~~~k~~~~~~-~~~~y~~p~~k~ss~~~~~~~~~g~gr~rg~~~ggg~grg  550 (556)
T PF05918_consen  474 QPITFRNNASQQANTGGKRPA--NGKSNNSPAKKGRQQN-MQQQYVPPSGKYSSNGGNSGRGRGGGRGRGRRSGGGRGRG  550 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcccccccccccccccCCCc--CCCCCCcccccccchh-hccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCc
Confidence                      23445688886  4433 44678899887 89999999999987444     4566666665 333  66


Q ss_pred             CCCCCC
Q 008797          548 RGRGYR  553 (553)
Q Consensus       548 r~~~~~  553 (553)
                      ||||||
T Consensus       551 ~~r~~~  556 (556)
T PF05918_consen  551 RGRGFW  556 (556)
T ss_dssp             ------
T ss_pred             ccccCC
Confidence            667999

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]	Back alignment and domain information

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd06561 AlkD_like A new structural DNA glycosylase	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes	Back alignment and domain information

>KOG2945 consensus Predicted RNA-binding protein [General function prediction only]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G)	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		553
3u0r_A		507	Helical Repeat Structure Of Apoptosis Inhibitor 5 R		3e-58
3v6a_A		474	Helical Repeat Structure Of Apoptosis Inhibitor 5 R		1e-56

>pdb|3U0R|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals Protein- Protein Interaction Modules Length = 507

Back alignment and structure

Iteration: 1

Score = 223 bits (567), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 183/546 (33%), Positives = 268/546 (49%), Gaps = 75/546 (13%) Query: 11 IEKLYEFGERLNEAKDKSQNVKD-YEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRA 69 +E+LY L +A ++ KD Y+ I++ K K K+LAAQ IP+FFK FP+L+ A Sbjct: 7 VEELYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSA 66 Query: 70 VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKAL 129 ++A LDL E+E++ +R QAI+ LP F T E L ++ DIL QLL ++ E + V+ AL Sbjct: 67 INAQLDLCEDEDVSIRRQAIKELPQFA--TGENLPRVADILTQLLQTDDSAEFNLVNNAL 124 Query: 130 MSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERH 189 +S+ + D K +L LF I ++ +RE+ + F+ K+ L E+L +E+E Sbjct: 125 LSIFKMDAKGTLGGLFSQI-----LQGEDIVRERAIKFLSTKLKTLPDEVLT--KEVEEL 177 Query: 190 ITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFN 249 I KKV LEDVTG EF +FM L L + +++ EL+ QADL+ FN Sbjct: 178 ILTESKKV---LEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVA---EQADLEQTFN 231 Query: 250 VSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKL--PEER---KLDLLK 304 SD D +DRL+ C A+P F + ++F+ Y + ++P L P E +L++LK Sbjct: 232 PSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLK 291 Query: 305 ALAEISPYTTPQDSRQILPSVAVLLKK---YMPL--------RKTGGEE--MNFTYVECL 351 LAE+S + D ++ ++ L K YMPL G EE + F+YVECL Sbjct: 292 LLAEMSSFCG--DMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECL 349 Query: 352 LYTFHHLAHKAPN-ATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMK 410 LY+FH L K P+ T L K+ KDF RL + ++ Sbjct: 350 LYSFHQLGRKLPDFLTAKLNAEKL-----------------KDFKIRLQYFARGLQVYIR 392 Query: 411 KLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDK 470 +L LA K A KT+E K K+ L+ NNI + K L PS+ Sbjct: 393 QLR--LALQGKTGEALKTEENKIKV--------VALKITNNINVLIKDLFHIPPSY--KS 440 Query: 471 SVNLSWKEATKPSV----PSTTTASGGKRPASINGSGNTASK-----KGRGSGGLQNQLV 521 +V LSWK K + S T SG S G A + G+ S L N Sbjct: 441 TVTLSWKPVQKVEIGQKRASEDTTSGSPPKKSSAGPKRDARQIYNPPSGKYSSNLGNFNY 500 Query: 522 NRALEG 527 R+L+G Sbjct: 501 ERSLQG 506

PyMOL of 3u0r

>pdb|3V6A|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals Protein- Protein Interaction Modules Length = 474

Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		553
3u0r_A		507	Apoptosis inhibitor 5; heat repeat, armadillo repe	100.0
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.18
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	97.91
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	97.85
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	97.84
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.78
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	97.7
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	97.67
1qgr_A		876	Protein (importin beta subunit); transport recepto	97.62
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	97.62
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	97.6
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	97.55
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	97.54
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	97.53
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	97.52
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	97.49
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	97.48
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	97.47
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	97.46
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.44
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	97.44
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	97.44
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	97.43
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	97.42
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	97.35
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.34
1qgr_A		876	Protein (importin beta subunit); transport recepto	97.27
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	96.99
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	96.93
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	96.88
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	96.86
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	96.84
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	96.83
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	96.8
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	96.79
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	96.76
3gs3_A		257	Symplekin, LD45768P; helix-turn-helix heat repeat	96.58
3o2t_A		386	Symplekin; heat repeat, scaffold, protein binding;	96.49
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	96.34
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	96.33
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	96.3
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	96.13
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	96.07
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	95.9
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	95.68
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	95.56
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	95.34
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	95.32
3gs3_A		257	Symplekin, LD45768P; helix-turn-helix heat repeat	95.19
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	95.18
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	95.14
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	95.07
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	95.03
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	94.95
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	94.83
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	94.52
3l9t_A		240	Putative uncharacterized protein SMU.31; hypotheti	94.31
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	93.85
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	93.61
2x1g_F		971	Cadmus; transport protein, developmental protein,	93.31
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	93.19
2x19_B		963	Importin-13; nuclear transport, protein transport;	93.14
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	91.74
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	91.7
3o2t_A		386	Symplekin; heat repeat, scaffold, protein binding;	90.84
3fga_B		403	Serine/threonine-protein phosphatase 2A 56 kDa RE	89.61
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	89.49
2npp_B		449	PP2A, B subunit, serine/threonine-protein phosphat	88.89
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	88.82
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	88.6
2jak_A		392	Serine/threonine-protein phosphatase 2A 56 kDa RE	88.35
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	87.95
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	87.92
1lsh_A		1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	87.38
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	87.06
2x1g_F		971	Cadmus; transport protein, developmental protein,	81.99
3jxy_A		232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	81.33
2b6c_A		220	Hypothetical protein EF3068; structural genomis, D	81.14

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A	Back alignment and structure

Probab=100.00  E-value=2.4e-143  Score=1145.53  Aligned_cols=445  Identities=36%  Similarity=0.594  Sum_probs=407.7

Q ss_pred             hHHHHHHHHHhhhhhhcccc-ccChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHH
Q 008797            8 AKQIEKLYEFGERLNEAKDK-SQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRV   86 (553)
Q Consensus         8 ~~~ie~LY~~~~~L~~akdk-~~~~~~y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~   86 (553)
                      .++||+||++||||+||+|+ ++|+++|++||+|+||++++|+|||||||||||+||+|+++|||||+|||||+|++||+
T Consensus         4 ~~~ie~LY~~~~~L~da~dk~~~~~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~   83 (507)
T 3u0r_A            4 MPTVEELYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRR   83 (507)
T ss_dssp             -CCHHHHHHHHHHHHHTGGGGGGGHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHH
T ss_pred             cchHHHHHHHhhHhhhccccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHH
Confidence            34699999999999999999 69999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 008797           87 QAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLS  166 (553)
Q Consensus        87 ~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lk  166 (553)
                      ||||+||.|||+  +|++||||||+||||+||++|+++|+|||++||++||++||++||+||.     .+||.+|||+|+
T Consensus        84 qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~-----~~~e~~Rer~lk  156 (507)
T 3u0r_A           84 QAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQIL-----QGEDIVRERAIK  156 (507)
T ss_dssp             HHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-----HSCHHHHHHHHH
T ss_pred             HHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHc-----ccchHHHHHHHH
Confidence            999999999999  9999999999999999999999999999999999999999999999999     678999999999


Q ss_pred             HHHhhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccc
Q 008797          167 FIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDA  246 (553)
Q Consensus       167 Fl~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~  246 (553)
                      ||++||++++.+++  ++|+|++|+++|+|   +|+|||++||++||++|++|++|+  ++.|| |+||+++.+||+|+.
T Consensus       157 Fi~~kl~~l~~~~l--~~E~E~~i~~~ikK---~L~DVT~~EF~L~m~lL~~lkl~~--t~~g~-qeLv~ii~eQa~L~~  228 (507)
T 3u0r_A          157 FLSTKLKTLPDEVL--TKEVEELILTESKK---VLEDVTGEEFVLFMKILSGLKSLQ--TVSGR-QQLVELVAEQADLEQ  228 (507)
T ss_dssp             HHHHHGGGSCTTTS--CHHHHHHHHHHHHH---HTTSCCHHHHHHHHHHHHTSGGGS--SHHHH-HHHHHHHHHHHTTTS
T ss_pred             HHHHHHhhcchhhc--cHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHhccccc--CchHH-HHHHHHHHHHHhccC
Confidence            99999999999999  69999999999999   999999999999999999999998  46677 999999999999999


Q ss_pred             cCCCCChHHHHHHHHHHHHhhhhhccCCchhhHHHHHHhhhccCCCCCChh-----hhhhHHHHHHHhCCCCC-chhhhh
Q 008797          247 QFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEE-----RKLDLLKALAEISPYTT-PQDSRQ  320 (553)
Q Consensus       247 ~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~l~~~-----~kl~lLK~lAe~s~~~~-~~~a~~  320 (553)
                      +|+++|+|+|||+|+|+++|+||||++++|++||+|||++|||+|++|++.     .|+++||+||||||||+ .+++++
T Consensus       229 ~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~  308 (507)
T 3u0r_A          229 TFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLET  308 (507)
T ss_dssp             CCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHH
Confidence            999999999999999999999999999999999999999999999999763     89999999999999999 677999


Q ss_pred             hhHHHHHHHHHhcCCCCC----------CCCccchHHHHHHHHHHHHhhhcCchhhhhccCcccccCCCCCcCCcChhhh
Q 008797          321 ILPSVAVLLKKYMPLRKT----------GGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDC  390 (553)
Q Consensus       321 ~l~~i~~~L~~~mP~~~~----------~~~~l~fs~vEcLL~afh~L~~k~P~~~~~~cg~k~~Tgqpsd~lgeD~~~~  390 (553)
                      +|++||++|++|||.||+          ++|+|||||||||||+||+||+|+|+|+.+                +|++++
T Consensus       309 ~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l~e----------------~~~~~~  372 (507)
T 3u0r_A          309 NLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTA----------------KLNAEK  372 (507)
T ss_dssp             HHHHHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHHHC----------------C--CCT
T ss_pred             HHHHHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhhcc----------------cccHHH
Confidence            999999999999999996          458999999999999999999999999843                256899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCChHHHHHHHhhhccchhhhhhhccHHHHhhhhhcCCCCccCCC
Q 008797          391 YKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDK  470 (553)
Q Consensus       391 ~kdFr~RLqyl~~~~q~yikkl~~~l~~~~K~~~~~k~ee~k~k~~~~~q~~~~aL~~~~NI~~li~~L~~~pPsf~~~~  470 (553)
                      |||||.|||||+|++|+|||+|+++|++  |+++++|+||||+|+        +|||||+||++||++|||+||+|++  
T Consensus       373 lkdfr~RLqy~ar~~q~yikkL~~~~~~--K~~~~~kteenk~kv--------~alkt~~NI~~likdlfh~pPsFk~--  440 (507)
T 3u0r_A          373 LKDFKIRLQYFARGLQVYIRQLRLALQG--KTGEALKTEENKIKV--------VALKITNNINVLIKDLFHIPPSYKS--  440 (507)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHTT--CCTTGGGSHHHHHHH--------HHHHHHHHHHHHHHHCC--CCCCCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchhhhcchHHHHHH--------HHHHHHhhHHHHHHHHhcCCCCcee--
Confidence            9999999999999999999999999987  999999999999998        7999999999999999999999998  


Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCC-cCCCCC
Q 008797          471 SVNLSWKEATKPSVPSTTTASGGKRPA-SINGSG  503 (553)
Q Consensus       471 ~i~lSW~~~~k~~~~~~~~~~~gkr~~-~~~g~~  503 (553)
                      +||+||++++|        ..+|||++ ..+|++
T Consensus       441 ~v~lSWk~~~~--------~~~~kr~~~~~~~~~  466 (507)
T 3u0r_A          441 TVTLSWKPVQK--------VEIGQKRASEDTTSG  466 (507)
T ss_dssp             CCCCTTSCC-------------------------
T ss_pred             eeeeeeecccc--------cccCCCCCCccCCCC
Confidence            99999998764        34688887 455544

PyMOL of 3u0r

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}	Back alignment and structure

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*	Back alignment and structure

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*	Back alignment and structure

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		553
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-07
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	3e-04

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 39/317 (12%), Positives = 95/317 (29%), Gaps = 29/317 (9%)

Query: 58  FFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-LSKIVDILVQLLAA 116
             K   D   + V   L L+E++   V+  A++ L        EY +  IVD L   + +
Sbjct: 35  SIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLS 94

Query: 117 EEIVERDAVHKALMSLLRQ---------DVKASLTALFKHIGSVDEPSTDEFIREKVLSF 167
           ++   RD     L +++ +                 +   + S      D  ++ + L  
Sbjct: 95  DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI 154

Query: 168 IRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAP 227
           + D +      L             ++  +L  L         +    + +L        
Sbjct: 155 MADMLSRQGGLL-------VNFHPSILTCLLPQLTS---PRLAVRKRTIIALGHLVMSCG 204

Query: 228 TERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHI 287
                +LI  +  +  L    ++S      + I+ +       +      ++L  +   +
Sbjct: 205 NIVFVDLIEHLLSE--LSKNDSMSTTRTYIQCIAAISRQAGHRIG-----EYLEKIIPLV 257

Query: 288 IPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLK--KYMPLRKTGGEEMNF 345
           +   +   +E +   ++A          +    +   + + LK   Y P      E+ + 
Sbjct: 258 VKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE 317

Query: 346 TYVECLLYTFHHLAHKA 362
             ++             
Sbjct: 318 NAMDADGGDDDDQGSDD 334

PyMOL of d1u6gc_

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		553
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	98.24
d1b3ua_		588	Constant regulatory domain of protein phosphatase	97.73
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.27
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.23
d1b3ua_		588	Constant regulatory domain of protein phosphatase	97.23
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.19
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.02
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.97
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	96.9
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	96.88
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	96.86
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.85
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.68
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.3
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	96.28
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	96.28
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.24
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	96.1
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	96.06
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.9
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	95.89
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	95.52
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	95.4
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	95.34
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	95.2
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	94.65
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	94.55
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	94.12
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	93.81
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	93.51
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	91.75
d2jaka1		343	Serine/threonine-protein phosphatase 2A regulatory	89.67
d1wj7a1		91	Ubiquitin-associated protein 2-like Ubap2l {Mouse	85.85
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	84.45

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure