Citrus Sinensis ID: 008800

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550---
MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSDA
ccccccccccccHHHHHHHHcccccccccccccccccccccccEEEEEcccEEEccccccccccccEEEEEEEcccEEEEEEEccccccccccccccccccEEcccccccEEEEEEEccccccEEEEEEEccccccccEEEEcccHHHHHHHHHHccccccccccccEEEEccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccEEEEHHHHHHHHHHccc
cccHHHccccccccccccHHHcHHHHcccccccccccccccccEEEEEEccEEEcccccccccccccEEEEcccccEEEEEEcccccccccccccccccccEEEEEEHHHcEEEEEcccccccEEEEEEEccccccccEEcccccHHHHHHHHHHHHcHccccccccEEEEccccHHHHHHHcccccccccccccccccHHHHcccccccccHccccHHcccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHccccHHcccccHHHHHHHcccccccccHHHHcccccEEEEccccccccHHHccccccccccccccccHHHHHHHccccccEccHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccEHHHHEEEEEEccccc
mqemelhdlsddaDYAASMqqgsssmmrsdsskrssssesegaelvylkdnvtihptqfASERISGRLKLIKQGSSLFMTWipykgqnsntrlsekdrnlytiravpftevrsirrhtpaFGWQYIIVVLSsglafpplyfytgGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSslelpravsiasgsstpvsigdsptnvnlertngglghdshsisqfhgrqkqkaqdpardISIQVLEKFSLVTKFARETTSQLFRenhsngfgafekkfdsqsaldfdhkasydtetivneipvapdpvefdkltlvwgkprqpplgseewttfldnegrvmdsnALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRerkglidkdvvrtdrsvtffdgddnpnvHLLRDILLTYSFynfdlgycqgmsdllsPILFVMEDESQSFWCFVALMERlgpnfnrdqngmhSQLFALSKLVElldnplhnyfkqndclnyfFCFRWVLIQFKRSDA
MQEMELHDLSDDADYAASMQqgsssmmrsdsskrssSSESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIpykgqnsntrlsekdrnlytiravpftevrsirrHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAvsiasgsstpvsigdsptNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWgkprqpplgseewttfldnegrvmdsnaLRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIkrqwqsispeqarrftkfrerkglidkdvvrtdrsvtffdgddnpnvHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSDA
MQEMELHDLSDDADYAAsmqqgsssmmrsdsskrssssesegAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSDA
********************************************LVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQN*******KDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTL*************************************************************ISIQVLEKFSLVTKFARETTSQLFR*****GFGAFE*******ALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPR***LGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI*****RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQF*****
****ELH***D*********************************LVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWI**********************AVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATI***************************************************************************************************************************************************************************************FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSDA
*********SDDADYAA*************************AELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSH*****************RDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSDA
***********DADYAA**********************SEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPV*IGDSPTNV***R**********************AQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLV***PRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKR***
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSDA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query553 2.2.26 [Sep-21-2011]
Q8TC07 691 TBC1 domain family member yes no 0.734 0.587 0.342 7e-71
Q9CXF4 671 TBC1 domain family member yes no 0.408 0.336 0.486 3e-63
Q9HA65 648 TBC1 domain family member no no 0.804 0.686 0.308 7e-59
Q8BYH7 645 TBC1 domain family member no no 0.408 0.350 0.477 1e-54
Q9UUH7 743 GTPase-activating protein yes no 0.896 0.667 0.282 8e-49
P09379 730 GTPase-activating protein yes no 0.873 0.661 0.269 5e-46
Q8TBP0 767 TBC1 domain family member no no 0.388 0.280 0.462 2e-44
Q6BU76 757 GTPase-activating protein yes no 0.884 0.645 0.250 1e-41
A1A5B6 742 TBC1 domain family member no no 0.401 0.299 0.382 4e-41
Q6FWI1 745 GTPase-activating protein yes no 0.430 0.319 0.356 5e-41
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function desciption
 Score =  268 bits (686), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 152/444 (34%), Positives = 238/444 (53%), Gaps = 38/444 (8%)

Query: 108 FTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDAN 167
            T+++SI+++    GW Y++  L   +  P L+F+ G  +  + +++++V+L  S +D  
Sbjct: 132 LTDLKSIKQNKEGMGWSYLVFCLKDDVVLPALHFHQGDSKLLIESLEKYVVLCESPQDKR 191

Query: 168 VFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSIS 227
             LVN  +  L ++  +                  + D P    ++    GL      + 
Sbjct: 192 TLLVNCQNKSLSQSFEN------------------LLDEPAYGLIQ---AGLLDRRKLLW 230

Query: 228 QFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKF-DSQS 286
             H  +K K +DP     I     FS VT +  ++        H            D+  
Sbjct: 231 AIHHWKKIK-KDPYTATMI----GFSKVTNYIFDSLRGSDPSTHQRPPSEMADFLSDAIP 285

Query: 287 ALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMD 346
            L  + +     E ++  I +   PV            R+ P+  EEWT  +D+EGR+++
Sbjct: 286 GLKINQQEEPGFE-VITRIDLGERPV----------VQRREPVSLEEWTKNIDSEGRILN 334

Query: 347 SNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS 406
            + +++ IF GG+ H LR++ W FLLGY+ +DST  ER  L+  K  EY  +K QW+SIS
Sbjct: 335 VDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEERTQLQKQKTDEYFRMKLQWKSIS 394

Query: 407 PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQ 466
            EQ +R ++ R+ + LI+KDV RTDR+  F++G DNP + LL DIL+TY  Y+FDLGY Q
Sbjct: 395 QEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQ 454

Query: 467 GMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLH 526
           GMSDLLSP+L+VME+E  +FWCF + M+++  NF     GM +QL  LS L+ LLD+   
Sbjct: 455 GMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLRLLDSGFC 514

Query: 527 NYFKQNDCLNYFFCFRWVLIQFKR 550
           +Y +  D    +FCFRW+LI+FKR
Sbjct: 515 SYLESQDSGYLYFCFRWLLIRFKR 538
Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.
Homo sapiens (taxid: 9606)
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 Back     alignment and function description
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2 Back     alignment and function description
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2 Back     alignment and function description
>sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1 Back     alignment and function description
>sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q8TBP0|TBC16_HUMAN TBC1 domain family member 16 OS=Homo sapiens GN=TBC1D16 PE=2 SV=1 Back     alignment and function description
>sp|Q6BU76|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|A1A5B6|TBC25_MOUSE TBC1 domain family member 25 OS=Mus musculus GN=Tbc1d25 PE=1 SV=1 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query553
225445585 657 PREDICTED: GTPase-activating protein gyp 0.994 0.837 0.794 0.0
297738991 684 unnamed protein product [Vitis vinifera] 0.994 0.804 0.757 0.0
449443057 655 PREDICTED: TBC1 domain family member 15- 0.994 0.839 0.768 0.0
356548490 656 PREDICTED: TBC1 domain family member 15- 0.987 0.832 0.756 0.0
356562977 655 PREDICTED: TBC1 domain family member 15- 0.985 0.832 0.745 0.0
357478201 666 TBC1 domain family member [Medicago trun 0.985 0.818 0.744 0.0
255572477645 conserved hypothetical protein [Ricinus 0.960 0.823 0.771 0.0
297792599 674 hypothetical protein ARALYDRAFT_495330 [ 0.985 0.808 0.703 0.0
186531517 673 RabGAP/TBC domain-containing protein [Ar 0.985 0.809 0.704 0.0
334188345 690 RabGAP/TBC domain-containing protein [Ar 0.985 0.789 0.684 0.0
>gi|225445585|ref|XP_002285365.1| PREDICTED: GTPase-activating protein gyp7-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  897 bits (2317), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/550 (79%), Positives = 492/550 (89%)

Query: 1   MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFA 60
           MQE ELHDLSDDADYAAS  QGS+S  RS SSKRSSSSES+GAE+VY KDNVTIHPTQ+A
Sbjct: 1   MQEAELHDLSDDADYAASQLQGSASFSRSGSSKRSSSSESDGAEIVYSKDNVTIHPTQYA 60

Query: 61  SERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPA 120
           SERISGRL+LIKQGSSLFMTWIPYKGQ SN RLSEKD++LYTIRAVPFT+VRSIRRHTP 
Sbjct: 61  SERISGRLRLIKQGSSLFMTWIPYKGQRSNPRLSEKDKSLYTIRAVPFTDVRSIRRHTPT 120

Query: 121 FGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQR 180
            GWQY+IVVLSSGLAFPPLYFY GGVREFLATIKQH  LVRS +DANVFLVNDF + LQR
Sbjct: 121 LGWQYVIVVLSSGLAFPPLYFYNGGVREFLATIKQHAFLVRSADDANVFLVNDFQDPLQR 180

Query: 181 TLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDP 240
           TLSSLELP AVS+A+G ST VS+ + P+N N E+ +GG      + SQ++GR + K  DP
Sbjct: 181 TLSSLELPMAVSVANGPSTSVSVSEPPSNENQEKADGGNFDGLGATSQYNGRHRPKIHDP 240

Query: 241 ARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTET 300
           ARD+SIQVLEKFSLVTKFAR+TTSQLFRE+H +GFG+ +++  +QS LD  HKAS D + 
Sbjct: 241 ARDLSIQVLEKFSLVTKFARDTTSQLFRESHGDGFGSNDRRHHNQSLLDSPHKASSDEQK 300

Query: 301 IVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVD 360
           + +EIPV  DP+EFDKL LVWGKPRQPPLGSEEW TFLD+EGR+MDS ALRKRIFYGG++
Sbjct: 301 VPDEIPVPSDPLEFDKLALVWGKPRQPPLGSEEWATFLDSEGRIMDSKALRKRIFYGGIE 360

Query: 361 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERK 420
           H LR+EVW FLLGY+AYDST AEREYL  IKKSEYE +K+QWQSISPEQA+RFTKFRERK
Sbjct: 361 HSLRKEVWTFLLGYHAYDSTSAEREYLVSIKKSEYETVKQQWQSISPEQAKRFTKFRERK 420

Query: 421 GLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME 480
           GLI+KDVVRTDRS++F+DGDDNPNV+LLRDILLTYSFYNFDLGYCQGMSDLLSPILFVM+
Sbjct: 421 GLIEKDVVRTDRSLSFYDGDDNPNVYLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMK 480

Query: 481 DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFC 540
           DE++SFWCFVALMERLGPNFNRDQNGMH+QLFA+SKLVELLD+PLHNYFKQNDCLNYFFC
Sbjct: 481 DEAESFWCFVALMERLGPNFNRDQNGMHTQLFAISKLVELLDSPLHNYFKQNDCLNYFFC 540

Query: 541 FRWVLIQFKR 550
           FRWVLIQFKR
Sbjct: 541 FRWVLIQFKR 550

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738991|emb|CBI28236.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449443057|ref|XP_004139297.1| PREDICTED: TBC1 domain family member 15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356548490|ref|XP_003542634.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|356562977|ref|XP_003549744.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|357478201|ref|XP_003609386.1| TBC1 domain family member [Medicago truncatula] gi|355510441|gb|AES91583.1| TBC1 domain family member [Medicago truncatula] Back     alignment and taxonomy information
>gi|255572477|ref|XP_002527173.1| conserved hypothetical protein [Ricinus communis] gi|223533438|gb|EEF35186.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297792599|ref|XP_002864184.1| hypothetical protein ARALYDRAFT_495330 [Arabidopsis lyrata subsp. lyrata] gi|297310019|gb|EFH40443.1| hypothetical protein ARALYDRAFT_495330 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|186531517|ref|NP_200071.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332008854|gb|AED96237.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334188345|ref|NP_001190524.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332008855|gb|AED96238.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query553
DICTYBASE|DDB_G0288811829 DDB_G0288811 "putative GTPase 0.622 0.414 0.4 2.9e-86
UNIPROTKB|F1NBY5 667 TBC1D15 "Uncharacterized prote 0.408 0.338 0.495 4.3e-76
UNIPROTKB|F1SH24 674 TBC1D15 "Uncharacterized prote 0.408 0.335 0.491 1e-74
UNIPROTKB|F1PGI0 682 TBC1D15 "Uncharacterized prote 0.408 0.331 0.491 2.6e-74
UNIPROTKB|Q8TC07 691 TBC1D15 "TBC1 domain family me 0.408 0.327 0.495 3.3e-74
UNIPROTKB|J3KNI9 682 TBC1D15 "TBC1 domain family me 0.408 0.331 0.495 4.3e-74
UNIPROTKB|J9NYJ6 674 TBC1D15 "Uncharacterized prote 0.408 0.335 0.491 4.3e-74
UNIPROTKB|F1N090 675 TBC1D15 "Uncharacterized prote 0.408 0.334 0.491 8.8e-74
UNIPROTKB|F1LPD8 670 Tbc1d15 "Protein Tbc1d15" [Rat 0.408 0.337 0.491 2.9e-73
MGI|MGI:1913937 671 Tbc1d15 "TBC1 domain family, m 0.408 0.336 0.486 4.2e-72
DICTYBASE|DDB_G0288811 DDB_G0288811 "putative GTPase activating protein (GAP)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 652 (234.6 bits), Expect = 2.9e-86, Sum P(3) = 2.9e-86
 Identities = 148/370 (40%), Positives = 219/370 (59%)

Query:   205 DSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTS 264
             D+  N N   +N    +++++ S       ++A    R+IS  + + F+ VT+ A+    
Sbjct:   363 DNENNSNNTNSNNNSNNNANTGSLSTSPTNKRALK--REISSSIFDNFAKVTQLAKSAQK 420

Query:   265 QLFRENHSNGFGAFEKKFDSQSALDFD---HKASYDTETIVNE----IPVAPD---PVEF 314
              +F E        F     S+S++  +     A+     I+NE    +  + D   P   
Sbjct:   421 NIFEEPAKRIDNHFRNLIGSKSSIGSNLSPQNANNQYFDILNESGSSLNASSDYFTPFNI 480

Query:   315 DKL--TLVWGKPRQP--PLGSEEWTTFLDNEGRVMDSNA--LRKRIFYGGVDHKLRREVW 368
               L  ++  G  R+   P+   EW ++ D+EGR+  +N   L K+IFYGG++  +R+EVW
Sbjct:   481 SSLNFSIELGANRRECNPMSPSEWYSYFDDEGRICLANQQILLKKIFYGGIEESIRQEVW 540

Query:   369 AFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVV 428
              FLLG Y++DSTY+ RE ++  K  +Y+ +KRQW+SIS EQ  RF+K++ RK LI KDV+
Sbjct:   541 PFLLGVYSFDSTYSSREVVKYEKTQQYQTVKRQWESISCEQESRFSKYQSRKLLIQKDVI 600

Query:   429 RTDR-SVTFFDGDD----NPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVM---E 480
             RTDR    F  G+D    N N+ L+RD+LLTYSF+NFD+GY QGMSDLLSPI+ VM    
Sbjct:   601 RTDRLHPMFIQGEDDIDSNENLRLMRDVLLTYSFFNFDIGYVQGMSDLLSPIISVMGGVS 660

Query:   481 DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFC 540
              E + FWCF  LM+RL  NF++DQNGMH QL  LSKL++ +D  L+ + + N+  N +F 
Sbjct:   661 KEVECFWCFKGLMDRLESNFHKDQNGMHHQLSTLSKLLKFIDLELYTHLEANNGGNMYFF 720

Query:   541 FRWVLIQFKR 550
             F+ VLI FKR
Sbjct:   721 FQSVLICFKR 730
GO:0032851 "positive regulation of Rab GTPase activity" evidence=IEA;ISS
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005097 "Rab GTPase activator activity" evidence=IEA;ISS
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|F1NBY5 TBC1D15 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SH24 TBC1D15 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGI0 TBC1D15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TC07 TBC1D15 "TBC1 domain family member 15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3KNI9 TBC1D15 "TBC1 domain family member 15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9NYJ6 TBC1D15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1N090 TBC1D15 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LPD8 Tbc1d15 "Protein Tbc1d15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1913937 Tbc1d15 "TBC1 domain family, member 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query553
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 9e-44
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 2e-38
COG5210 496 COG5210, COG5210, GTPase-activating protein [Gener 5e-30
pfam12068210 pfam12068, DUF3548, Domain of unknown function (DU 2e-18
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score =  154 bits (391), Expect = 9e-44
 Identities = 65/197 (32%), Positives = 89/197 (45%), Gaps = 20/197 (10%)

Query: 355 FYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFT 414
              GV   LR  VW  LL     D             K  Y  + ++  +   +      
Sbjct: 1   VRKGVPPSLRGVVWKLLLNAQPMD---------TSADKDLYSRLLKET-APDDKSIVHQ- 49

Query: 415 KFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSP 474
                   I+KD+ RT    +FF   + P    LR +L  Y+ YN ++GYCQGM+ L +P
Sbjct: 50  --------IEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAP 101

Query: 475 ILFVMEDESQSFWCFVALMERLGPNF-NRDQNGMHSQLFALSKLVELLDNPLHNYFKQND 533
           +L VMEDE  +FWC V LMER GPNF   D +G+   L  L +LV+  D  L+ + K   
Sbjct: 102 LLLVMEDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLG 161

Query: 534 CLNYFFCFRWVLIQFKR 550
                +  RW L  F R
Sbjct: 162 ITPSLYALRWFLTLFAR 178

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|192931 pfam12068, DUF3548, Domain of unknown function (DUF3548) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 553
KOG1648813 consensus Uncharacterized conserved protein, conta 100.0
KOG2224 781 consensus Uncharacterized conserved protein, conta 100.0
PF12068213 DUF3548: Domain of unknown function (DUF3548); Int 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG2197 488 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG2058 436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
KOG4567370 consensus GTPase-activating protein [General funct 99.98
COG5210 496 GTPase-activating protein [General function predic 99.97
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 99.96
KOG2223586 consensus Uncharacterized conserved protein, conta 99.94
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 99.94
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.9
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.85
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.84
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.81
KOG1093 725 consensus Predicted protein kinase (contains TBC a 99.77
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.74
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.72
KOG2595 395 consensus Predicted GTPase activator protein [Sign 99.64
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.19
KOG3636 669 consensus Uncharacterized conserved protein, conta 98.26
KOG2197 488 consensus Ypt/Rab-specific GTPase-activating prote 97.58
KOG2224 781 consensus Uncharacterized conserved protein, conta 93.89
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 92.68
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-49  Score=406.38  Aligned_cols=450  Identities=22%  Similarity=0.320  Sum_probs=340.8

Q ss_pred             CCcEEEEeeCCeEEccCCcccccCCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeee--eeCCCeeEEEEeC
Q 008800           41 EGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRA--VPFTEVRSIRRHT  118 (553)
Q Consensus        41 ~~~~llf~K~~V~vhpt~~~~~~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~--v~ls~i~si~~~~  118 (553)
                      ++++|||+||+|.|+|.. +++.+||||+|+|....++|+|+||+.|+++...++.+++.||.++  |++.+|.+||||+
T Consensus       250 sr~~llygkN~vlvqPk~-dmeavpgYlSLhq~ad~ltLKWtPNQLMngs~gds~~EksvyWdya~~i~~~~ivyiHcHQ  328 (813)
T KOG1648|consen  250 SRTRLLYGKNHVLVQPKS-DMEAVPGYLSLHQFADGLTLKWTPNQLMNGSSGDSSGEKSVYWDYAINIEMQDIVYIHCHQ  328 (813)
T ss_pred             chhhhhcccccccccCch-hhhcccceeeHhhhhccceeecChHHhhcCCCCCccccceeeecceeeeehhheEEEEeec
Confidence            678999999999999976 8999999999999999999999999999999988899999999876  9999999999999


Q ss_pred             CCCCceEEEEEeCCCCcCCceeeccCCH-HHHHHHHHhcccccccCCCCceEEEeCC---chhhhhhhcccCCCccc-cc
Q 008800          119 PAFGWQYIIVVLSSGLAFPPLYFYTGGV-REFLATIKQHVLLVRSVEDANVFLVNDF---DNRLQRTLSSLELPRAV-SI  193 (553)
Q Consensus       119 p~~g~~~~il~~~dG~~~P~L~F~~GG~-~~fl~~L~~~~~l~rS~~d~~~~lv~~~---~~~l~~~~s~~~~~~~~-~~  193 (553)
                      ......++++|.+||++.|||+|+.||+ ..||+||++ +.|+++++||++|...+-   -++|++. |+....... .-
T Consensus       329 q~eSggtlvlVsqdGiQrpPf~fP~GgHll~FLScLEn-GLlP~gqLdPPLW~q~gKgKvfPkLRKR-S~~~s~~~~~~~  406 (813)
T KOG1648|consen  329 QDESGGTLVLVSQDGIQRPPFQFPAGGHLLAFLSCLEN-GLLPLGQLDPPLWVQTGKGKVFPKLRKR-STAVSNPAMEMG  406 (813)
T ss_pred             ccCCCCeEEEEecccccCCCccCCCCchhHHHHHHHHh-cCCcccccCCccccccCCcccchhhhhc-CcccCCchhhcC
Confidence            9877789999999999999999999999 799999998 999999999999999772   3677553 222111100 11


Q ss_pred             CCCCCCCcccC-CCCCcccccccCC---------------CCCCCCCcccccccc---ccCcCCChhhhhhHHHHhhHHH
Q 008800          194 ASGSSTPVSIG-DSPTNVNLERTNG---------------GLGHDSHSISQFHGR---QKQKAQDPARDISIQVLEKFSL  254 (553)
Q Consensus       194 ~~~~~~~~~~~-~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~s~  254 (553)
                      ...+++||++. ++++..+....|-               ...+.+.+|++..+.   ....++.++ .+.+.++     
T Consensus       407 ~~~atDYVFRiiypg~~~E~~p~D~~d~~~~~~~p~wh~~P~~ssc~scS~s~Sp~~~~s~~sc~~~-r~pl~ll-----  480 (813)
T KOG1648|consen  407 TGRATDYVFRIIYPGSGVEPAPEDIEDPLFGPSAPTWHSPPIHSSCNSCSLSNSPYIVDSVDSCVNF-RLPLGLL-----  480 (813)
T ss_pred             cccccceEEEEeecCCCCCCCchhhhccccCCCCcccCCCCcccccccccCCCCCCccccccccccc-cchHHHH-----
Confidence            23456788765 4444444333221               112233445544332   122334444 3667787     


Q ss_pred             HHHHHHHHHhhhhhccCCCCCccchhccccccccccCCCCCccccccc---c-CCCCCCCcccccccccccCCCCCCCCC
Q 008800          255 VTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIV---N-EIPVAPDPVEFDKLTLVWGKPRQPPLG  330 (553)
Q Consensus       255 ~t~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~-~~~~~~~~~e~~~~~~~~~~~r~~plt  330 (553)
                      |.+|.+|+++++|     |||.+|+|+            .++|++++.   + .+-.|++|.+.           ..+||
T Consensus       481 C~sMk~QI~sRAF-----YGWLaycRH------------LsTvRTHLsaLV~h~~~~pD~pcda-----------~~glt  532 (813)
T KOG1648|consen  481 CQSMKNQIMSRAF-----YGWLAYCRH------------LSTVRTHLSALVDHKTLIPDDPCDA-----------SAGLT  532 (813)
T ss_pred             HHHHHHHHHHHHH-----HHHHHHHHH------------HHHHHHHHHHHhcccccCCCCCCCc-----------ccccc
Confidence            9999999999999     999999664            555666652   1 12234444322           56899


Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChHHH
Q 008800          331 SEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA  410 (553)
Q Consensus       331 ~~~W~~~~~~~g~~~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~  410 (553)
                      ++-|+.+..+.  .+..-++.+..++|++....|+.+|+.+++.+...+...+.+.........|+...-.|.       
T Consensus       533 ~~~W~qy~~d~--t~~e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~-------  603 (813)
T KOG1648|consen  533 EKFWKQYRADP--TIEEWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLF-------  603 (813)
T ss_pred             HHHHHHHhcCC--chHHHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHH-------
Confidence            99999998542  333334455566999999999999999999988887766655555566677876555443       


Q ss_pred             hhhhhhhhhccccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHHHHHHHHH
Q 008800          411 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFV  490 (553)
Q Consensus       411 ~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f~  490 (553)
                            +-..++|++|+.|++++..+|...++  ++. +++..+|...|-+-||.|||+||.+|++..++||..+--||.
T Consensus       604 ------~~~~~~~~kd~e~~~~~~~~fs~~~~--les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s  674 (813)
T KOG1648|consen  604 ------RANLHRIDKDVERCDRNLMFFSNKDN--LES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFS  674 (813)
T ss_pred             ------hhheeeecchhhhCcchheeecCCcc--hhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCc
Confidence                  33457999999999999999997554  466 899999999999999999999999999999999988888999


Q ss_pred             HHHHHhccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhccccc
Q 008800          491 ALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSD  552 (553)
Q Consensus       491 ~Lm~~~~~~F~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkREf  552 (553)
                      -+|-+-...|.. .+||...+-.++ +++..+|-... +...    .-..|+||+.-|+||+
T Consensus       675 ~~~~~q~~~~~q-~~~~~~~l~~~r-~~~v~~~l~s~-id~~----qa~~f~~~~~~~~~~~  729 (813)
T KOG1648|consen  675 LLMLRQRGKFPQ-RPGMSKCLLNLR-LIQVVDPLISD-IDYA----QALSFRWFLLDFKREL  729 (813)
T ss_pred             HHHHHhcccCCC-CCCccccccccc-chhhhcchhcc-hhhh----hhcceeeeccCccccc
Confidence            888777666643 457777776666 88888883332 2211    1334899999999986

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query553
2g77_A 410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 3e-11
1fkm_A 396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 4e-11
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 2e-10
3hzj_A 310 Crystal Structure Of The Rabgap Domain Of The Rabga 3e-06
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 5e-06
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 8e-06
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 2e-05
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 9e-05
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure 
Iteration: 1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 40/222 (18%)
Query: 352 KRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR 411
           ++I + G+    R  VW  L+GY   ++   E    R  K+ EY +  +   + S + +R
Sbjct: 47  RQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQR--KRKEYRDSLKH--TFSDQHSR 102
Query: 412 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDL 471
               + +    I+ D+ RT+  +  +      N   L+ IL  ++  +   GY QG++DL
Sbjct: 103 DIPTWHQ----IEIDIPRTNPHIPLYQFKSVQNS--LQRILYLWAIRHPASGYVQGINDL 156
Query: 472 LSPIL--FVMED--------------------------ESQSFWCFVALMERLGPNFNRD 503
           ++P    F+ E                           E+ +FWC   L+E++  N+   
Sbjct: 157 VTPFFETFLTEYLPPSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHG 216
Query: 504 QNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYF-FCFRWV 544
           Q G+  Q+  LS+LV+ +D  L+N+F QN+ + +  F FRW+
Sbjct: 217 QPGILRQVKNLSQLVKRIDADLYNHF-QNEHVEFIQFAFRWM 257
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query553
1fkm_A 396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 7e-62
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 2e-61
2qq8_A334 TBC1 domain family member 14; structural genomics 6e-33
3hzj_A 310 Rabgap1L, RAB GTPase-activating protein 1-like; st 6e-30
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 4e-29
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 5e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
 Score =  207 bits (529), Expect = 7e-62
 Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 40/247 (16%)

Query: 332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIK 391
            ++   L  +  +++   LR +I + G+    R  VW  L+GY   ++    +E     K
Sbjct: 9   SKFDNIL-KDKTIINQQDLR-QISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRK 64

Query: 392 KSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDI 451
           + EY +  +   S       + ++       I+ D+ RT+  +  +      N   L+ I
Sbjct: 65  RKEYRDSLKHTFS------DQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNS--LQRI 116

Query: 452 LLTYSFYNFDLGYCQGMSDLLSPILFVM----------------------------EDES 483
           L  ++  +   GY QG++DL++P                                 + E+
Sbjct: 117 LYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEA 176

Query: 484 QSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRW 543
            +FWC   L+E++  N+   Q G+  Q+  LS+LV+ +D  L+N+F+        F FRW
Sbjct: 177 DTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRW 236

Query: 544 VLIQFKR 550
           +     R
Sbjct: 237 MNCLLMR 243
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query553
1fkm_A 396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A 310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 99.95
2cay_A145 VPS36 PH domain, vacuolar protein sorting protein 96.11
2hth_B140 Vacuolar protein sorting protein 36; GLUE domain, 94.92
1pfj_A108 TFIIH basal transcription factor complex P62 subun 89.91
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
Probab=100.00  E-value=9.3e-40  Score=346.96  Aligned_cols=211  Identities=25%  Similarity=0.442  Sum_probs=185.5

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChHHH
Q 008800          331 SEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA  410 (553)
Q Consensus       331 ~~~W~~~~~~~g~~~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~  410 (553)
                      .++|.++++.+. .++.++||+++ ++|||+.+|+.||++|||++|.+.+.+  +.....++..|..++++|.....   
T Consensus         8 ~~kw~~lL~~~~-~~d~~~Lr~l~-~~GIP~~lR~~vW~~LLg~~~~~~~~~--~~~l~~~~~~Y~~l~~~~~~~~~---   80 (396)
T 1fkm_A            8 ISKFDNILKDKT-IINQQDLRQIS-WNGIPKIHRPVVWKLLIGYLPVNTKRQ--EGFLQRKRKEYRDSLKHTFSDQH---   80 (396)
T ss_dssp             HHHHHHHHSSCS-BCCHHHHHHHH-TTCCCGGGHHHHHHHHTTCSCSBGGGH--HHHHHHHHHHHHHHHHHTSSSSC---
T ss_pred             HHHHHHHHcCCC-CCCHHHHHHHH-HcCCCHHHHHHHHHHHHCCCCCChhHH--HHHHHHHHHHHHHHHHHHhhccC---
Confidence            489999998643 48999999988 689999999999999999999877544  55667788999999998764211   


Q ss_pred             hhhhhhhhhccccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcC----------
Q 008800          411 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME----------  480 (553)
Q Consensus       411 ~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~----------  480 (553)
                         ....+..++|++||.||+|++++|..  ..+++.|+|||.+|+.+||++|||||||+||||||+++.          
T Consensus        81 ---~~~~~~~~qI~~Dv~RT~p~~~~F~~--~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~  155 (396)
T 1fkm_A           81 ---SRDIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQID  155 (396)
T ss_dssp             ---STHHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGG
T ss_pred             ---cccHHHHHHHHHHhhhhCCCcccccC--chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccc
Confidence               01223346899999999999999986  457899999999999999999999999999999998752          


Q ss_pred             --------C----------HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHH
Q 008800          481 --------D----------ESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFR  542 (553)
Q Consensus       481 --------d----------E~~AFw~f~~Lm~~~~~~F~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~r  542 (553)
                              +          |++|||||++||+++..+|..+++|+...+.+++.||+..+|+||+||++.++.+.+|+++
T Consensus       156 ~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~r  235 (396)
T 1fkm_A          156 DVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFR  235 (396)
T ss_dssp             GTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHH
T ss_pred             cccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence                    1          9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccccC
Q 008800          543 WVLIQFKRSDA  553 (553)
Q Consensus       543 WfltlFkREf~  553 (553)
                      ||+|+|+|||.
T Consensus       236 W~l~LF~~~~p  246 (396)
T 1fkm_A          236 WMNCLLMREFQ  246 (396)
T ss_dssp             HHHTTTGGGSC
T ss_pred             HHHHHHHhhCC
Confidence            99999999983
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12 Back     alignment and structure
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A Back     alignment and structure
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 553
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 4e-29
d1fkma2 188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 8e-07
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (279), Expect = 4e-29
 Identities = 36/197 (18%), Positives = 71/197 (36%), Gaps = 40/197 (20%)

Query: 332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIK 391
            ++   L ++  +++   LR+   + G+    R  VW  L+GY   ++   E    R  K
Sbjct: 8   SKFDNILKDK-TIINQQDLRQIS-WNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRK 65

Query: 392 KSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDI 451
           +             S +              I+ D+ RT+  +  +      N   L+ I
Sbjct: 66  EYRDSLKHTFSDQHSRD--------IPTWHQIEIDIPRTNPHIPLYQFKSVQNS--LQRI 115

Query: 452 LLTYSFYNFDLGYCQGMSDLLSPILFVM----------------------------EDES 483
           L  ++  +   GY QG++DL++P                                 + E+
Sbjct: 116 LYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEA 175

Query: 484 QSFWCFVALMERLGPNF 500
            +FWC   L+E++  N+
Sbjct: 176 DTFWCLTKLLEQITDNY 192
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query553
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.97
d2hthb1129 Vacuolar protein sorting protein 36, VPS36 {Human 96.73
d2caya1130 Vacuolar protein sorting protein 36, VPS36 {Baker' 94.36
d2rnrb1108 TFIIH basal transcription factor complex p62 subun 93.77
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.1e-32  Score=260.74  Aligned_cols=158  Identities=23%  Similarity=0.447  Sum_probs=132.2

Q ss_pred             HHHHHhhhhcCCCCChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChHHHh
Q 008800          332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR  411 (553)
Q Consensus       332 ~~W~~~~~~~g~~~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~  411 (553)
                      ++|.+++.+ ..+++.++||+++ ++|||+.+|+.||++|||++|.+++.+++  ....++..|..+...+......   
T Consensus         8 ~~~~~~l~~-~~~i~~~~lr~l~-~~Gip~~lR~~vW~~llg~~~~~~~~~~~--~~~~~~~~y~~~~~~~~~~~~~---   80 (194)
T d1fkma1           8 SKFDNILKD-KTIINQQDLRQIS-WNGIPKIHRPVVWKLLIGYLPVNTKRQEG--FLQRKRKEYRDSLKHTFSDQHS---   80 (194)
T ss_dssp             HHHHHHHSS-CSBCCHHHHHHHH-TTCCCGGGHHHHHHHHTTCSCSBGGGHHH--HHHHHHHHHHHHHHHTSSSSCS---
T ss_pred             HHHHHHhcc-cCCCCHHHHHHHH-HcCCChHHHHHHHHHHHhhcCCchhhHHH--HHHHHhhhhhhhhhhhhhcccc---
Confidence            679998864 6679999999988 78999999999999999999999887754  4456778888777665433221   


Q ss_pred             hhhhhhhhccccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcC-----------
Q 008800          412 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME-----------  480 (553)
Q Consensus       412 ~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~-----------  480 (553)
                         ...+...+|++||.||+|++++|..  .++++.|+|||.+|+.+||++|||||||+||||||+++.           
T Consensus        81 ---~~~~~~~~I~~Dv~RT~~~~~~f~~--~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~  155 (194)
T d1fkma1          81 ---RDIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDD  155 (194)
T ss_dssp             ---THHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGG
T ss_pred             ---cchHHHHHHHHHHHhcCCccccccc--chhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhh
Confidence               1223446899999999999999986  457799999999999999999999999999999998862           


Q ss_pred             -----------------CHHHHHHHHHHHHHHhccCCC
Q 008800          481 -----------------DESQSFWCFVALMERLGPNFN  501 (553)
Q Consensus       481 -----------------dE~~AFw~f~~Lm~~~~~~F~  501 (553)
                                       .|++|||||++||+++.++|.
T Consensus       156 ~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         156 VEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI  193 (194)
T ss_dssp             TTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred             hhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence                             289999999999999988875
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure