Citrus Sinensis ID: 008822

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550--
Protein Sequence
MLGGRFSLFGGGGGGGGGGGGGGSKSNKVANNSKNDGVLPTLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKPADDITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAPAGHNRNDKHFSLEPLWVRT
Secondary Structure (PSIPRED)
ccccccEEccccccccccccccccccccccccccccccccEEEEEEcccEEEcccEEEEEEEEEccccccccccccccEEEEEEEEEEEEEEEccccEEccccccccccccccEEEEEccccEEEEEEEEccccEEEEEEEEEccccccccccccEEEEEEEEEEEEccEEEEEccccccccccccccEEEEEEEEEEEEEccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEcccccccEEccccEEEEEEEccccccccEEEEEEEEEEEEEEccccccccccccccEEEEEEEEEEEEEcccEEEEEEccccccccEEEEcEEEEEEEEEEEEEEcccccccccccccccccccccEEEEEEEEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEccEEEccccccccccccccccccccccccccEEEEEEccEEEccccEEEEEEEEEcccccccccccccEEEEEEEEEEEEEEEccccEEEccccccccccccccEEEEcccccEEEccEEEcccccEEEEEEEEccccccccccHHHEEEEEEEEEEEcccEEEEcccccccccHHHHHHHHccccEEEEEEccccccccccccccccccccEEEEEEEEEccccccHHHHHccccccccccccccccccccccccccccHcHcccccccccccccccccccccccHHcccccccccccccccccHHEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEccccccEEEccccEEEEEEEccccccEEEEEEEEEEEEEEEEcHHcccccccccccEEEEEcccEEEHHcccccEEEEEccccccccccccEEEEEEEEEEEEEEccccccccccccccccccccEEEEEEEEEEEcccccccccccccccccccccEEEcc
Coil and Loop (DISEMBL)
mlggrfslfggggggggggggggsksnkvannskndgvlptlklqtdknvytpgdTVFVTVEIcnplssgdnAVLSSLLIESLSFEIKGIQKLdsqwfatqkplpgskqrrgefafLDISASKLisnqivssdatksyvirtelpsiippsyrgttIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVTQkgngllteenqndgivpattiQMDIYWkemdgdsewsrandiydgveegyessrdeissvssynpskenLLKTFgsslslqsstarsstkdipaFEGELMRLssnvalpqlsaaevlydssadvispnksaavvspsqqqkltkpadditgaspspqagvvepaasegfirgrsynirmddqvllrfspknsestyyfSDMIGGTLTFFHEEGARRCLEVLITLETsetinrwfvhpsrrnsptitkiqSDHHEVVADLVQTSFlfsipmdgpmsfstpYVSVQWALRFEFlttpkhvqwtryehplliegrdksewvlpitvhappsgapaghnrndkhfsleplwvrt
Flexible Loop (DISEMBL)
MLGGRFSLFGGGGGGGGGGGGGGSKSNKVANNSKNDGVLPTLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQkplpgskqrrGEFAFLDISASklisnqivssdatksyvirtelpsiippsyrgtTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVTQKgngllteenqndgivpatTIQMDIYWKEMDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKsaavvspsqqqkLTKPADDitgaspspqagvvepAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETsetinrwfvhpsrrnSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPpsgapaghnrndkhfsleplwvrt
Low Complexity Region (SEG)
MLGGRFSLFggggggggggggggsksnkvannsknDGVLPTLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVlssllieslsfeiKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIYDGVEEGYEssrdeissvssYNPSKENLLKTFGsslslqsstarsstKDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKPADDITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAPAGHNRNDKHFSLEPLWVRT
Disordered region (IsUnstruct)
****************************************TLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQ**********GEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIY*****************************************************************************************************************************FIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRR**PTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVH**************************
Disordered Region (DISOPRED)
****RFS*FGG******************************LKLQTDKNVYTPGDTVFVTVEICNPL******VLSSLLIESLSFEIKGIQKLDSQW********************DISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSAR*******************VEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKE*************************************************************************************************************************************************YNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSE*********************SDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPK*****************KSEWVLPITVHA******************EPLWVR*
Disordered Region (DISEMBL)
MLGGRFSLFGGGGGG*********KSNKVANNSKNDGVLPTLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIYDGVEE**************YNPSKENLLKTFGS*************KDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPN*******************DITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAPAGHNRNDKHFSLEPLWVRT
Disordered Region (DISPRO)
*****F******************************GVLPTLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIYDGVE***************************************************LMRLSSNVALPQLSAAEVLYDSSADV*********************************************IRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAP******DKHFSLEPLWV**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLGGRFSLFGGGGGGGGGGGGGGSKSNKVANNSKNDGVLPTLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKPADDITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAPAGHNRNDKHFSLEPLWVRT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	552	2.2.26 [Sep-21-2011]
Q92546	391	Retrograde Golgi transpor	yes	no	0.221	0.312	0.288	1e-05
Q8BHT7	391	Retrograde Golgi transpor	yes	no	0.219	0.309	0.286	2e-05
Q2T9P3	394	Retrograde Golgi transpor	yes	no	0.222	0.312	0.289	2e-05

>sp|Q92546|RGP1_HUMAN Retrograde Golgi transport protein RGP1 homolog OS=Homo sapiens GN=RGP1 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 27/149 (18%)

Query: 395 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNS---PTITKI- 450
           +S Y   + + GTL     EG   CL+  ++L+T E +   +    RR +   P+++ + 
Sbjct: 230 KSVYRLGEDVVGTLNL--GEGTVACLQFSVSLQTEERVQPEYQR--RRGAGGVPSVSHVT 285

Query: 451 QSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTT-------------P 497
            + H E      +TSF   IP+     F T  VS++W L FEF+T+             P
Sbjct: 286 HARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVEQP 345

Query: 498 KHVQWTRYEH-PLLIEGRDKSEWVLPITV 525
           +   WT  E  P+     D   W LPI V
Sbjct: 346 EPTTWTGPEQVPV-----DTFSWDLPIKV 369

Homo sapiens (taxid: 9606)

>sp|Q8BHT7|RGP1_MOUSE Retrograde Golgi transport protein RGP1 homolog OS=Mus musculus GN=Rgp1 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 29/150 (19%)

Query: 395 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRN----SPTITKI 450
           +S Y   + + GTL     EG   CL+  ++L+T E +   +    RR     +P+++ +
Sbjct: 230 KSVYRLGEDVVGTLNL--GEGTVACLQFSVSLQTEERVQPEY---QRRRGTGVAPSVSHV 284

Query: 451 -QSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTT------------- 496
             + H E      +TSF   IP+     F T  VS++W L FEF+T+             
Sbjct: 285 THARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPLEQ 344

Query: 497 PKHVQWTRYEH-PLLIEGRDKSEWVLPITV 525
           P+   WT  E  P+     D   W LPI V
Sbjct: 345 PEPATWTGPEQVPV-----DTFSWDLPIKV 369

Mus musculus (taxid: 10090)

>sp|Q2T9P3|RGP1_BOVIN Retrograde Golgi transport protein RGP1 homolog OS=Bos taurus GN=RGP1 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 29/152 (19%)

Query: 395 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRN----SPTITKI 450
           +S Y   + + GTL     EG   CL+  ++L+T E +   +    RR     +P+++ I
Sbjct: 230 KSVYRLGEDVVGTLNL--GEGTVACLQYSVSLQTEERVQPEY---QRRRGAGGAPSVSHI 284

Query: 451 -QSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTT------------- 496
             + H E      +TSF   IP+     F T  VS++W L FEF+T+             
Sbjct: 285 THARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVEQ 344

Query: 497 PKHVQWTRYEH-PLLIEGRDKSEWVLPITVHA 527
           P+   WT  E  P+     D   W LPI   A
Sbjct: 345 PEPATWTGPEQVPV-----DTFSWDLPIKPEA 371

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	552
224096556	533	predicted protein [Populus trichocarpa]	0.952	0.986	0.717	0.0
225423763	552	PREDICTED: uncharacterized protein LOC10	0.923	0.923	0.733	0.0
449438811	538	PREDICTED: uncharacterized protein LOC10	0.971	0.996	0.662	0.0
255554424	528	conserved hypothetical protein [Ricinus	0.936	0.979	0.667	0.0
357513087	529	Retrograde Golgi transport protein RGP1-	0.954	0.996	0.655	0.0
22330146	532	uncharacterized protein [Arabidopsis tha	0.963	1.0	0.644	0.0
297847350	527	hypothetical protein ARALYDRAFT_891939 [	0.954	1.0	0.639	0.0
356522946	576	PREDICTED: uncharacterized protein LOC10	0.909	0.871	0.640	0.0
8569091	506	Contains a legume lectins beta domain PF	0.916	1.0	0.619	0.0
449476616	427	PREDICTED: uncharacterized protein LOC10	0.748	0.967	0.713	1e-175

>gi|224096556|ref|XP_002310656.1| predicted protein [Populus trichocarpa] gi|222853559|gb|EEE91106.1| predicted protein [Populus trichocarpa]

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/535 (71%), Positives = 448/535 (83%), Gaps = 9/535 (1%)

Query: 20  GGGGSKSNKVANNSKNDGVLPTLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLL 79
           G GGS+    +++ + D ++PTLK+QTDK+VY PGD++ VT+EI NP       V+SSLL
Sbjct: 6   GSGGSRKVDNSSDGRKDELVPTLKVQTDKDVYRPGDSILVTIEISNPKDGASEDVMSSLL 65

Query: 80  IESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDISASKLISNQIVSSDATKSYV 139
           IE L F I+GIQKLD+QWFATQKPLPGSKQRRGE  F+D S S ++SNQIVSS ATK+YV
Sbjct: 66  IEKLGFAIRGIQKLDNQWFATQKPLPGSKQRRGEHVFMDCSTSSIVSNQIVSSGATKTYV 125

Query: 140 IRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIW 199
           +RT LPSIIPPSYRG TIRY+YYV+STLS + L+L+N  + RES +DL Q+E R+PLQIW
Sbjct: 126 VRTLLPSIIPPSYRGATIRYIYYVESTLSGQQLMLDNTNSHRESSKDLLQLEDRIPLQIW 185

Query: 200 VTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIYDGVEEGYESSRDEI 259
           V QKGNGL+ EE Q+DGIVP TTIQ+DIYWKEMDGD+EW+RAND+ DGVEEG+ES RDEI
Sbjct: 186 VAQKGNGLIVEEGQSDGIVPPTTIQLDIYWKEMDGDNEWARANDLDDGVEEGHESLRDEI 245

Query: 260 SSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIPAFEGELMRLSSNVALPQLSAAEVL 319
           SSVSSYNP++E++ KTFGSSLSLQ S ARSS KD    EG    LS+ +ALP+LSAAEVL
Sbjct: 246 SSVSSYNPNRESIHKTFGSSLSLQ-SVARSSNKDASFTEGGRRSLST-LALPRLSAAEVL 303

Query: 320 YDSSADVISPNKSAAVVSPSQQQKLTKPADDITGASPSPQAGVV--EPAASEGFIRGRSY 377
           YDS AD+  P+KS+A+V PSQQ +     DD+ G S +P    V  EPAASEGFIRGRSY
Sbjct: 304 YDSGADMAEPDKSSAMVFPSQQLR-----DDMAGVSYTPGTVSVNNEPAASEGFIRGRSY 358

Query: 378 NIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFV 437
           NIRMDD VLLRFSP+NS+STYYFSDMIGGTLTFFHEEGA++CLEV ITLETSET++R ++
Sbjct: 359 NIRMDDHVLLRFSPRNSDSTYYFSDMIGGTLTFFHEEGAKKCLEVSITLETSETVSRRYI 418

Query: 438 HPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTP 497
           HPSR+NSPTITK+QSDHHEVVADLVQTSFLFSIPMDGPMSFST +VSVQW LRFEF TTP
Sbjct: 419 HPSRKNSPTITKVQSDHHEVVADLVQTSFLFSIPMDGPMSFSTSHVSVQWVLRFEFFTTP 478

Query: 498 KHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAPAGHNRNDKHFSLEPLWVRT 552
           K+V WTRYEHPLLIEGRDKSEWVLPITVHAPP  A A H+RN+K FSLEPLWVRT
Sbjct: 479 KNVDWTRYEHPLLIEGRDKSEWVLPITVHAPPPRASAAHSRNEKGFSLEPLWVRT 533

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423763|ref|XP_002277216.1| PREDICTED: uncharacterized protein LOC100257645 [Vitis vinifera] gi|297737934|emb|CBI27135.3| unnamed protein product [Vitis vinifera]

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/526 (73%), Positives = 440/526 (83%), Gaps = 16/526 (3%)

Query: 38  VLPTLKLQTDKNVYTPGDTVFVTVEICNP------LSSGDNA--VLSSLLIESLSFEIKG 89
           ++P+LKL+TDK+VY PG+++ V++EI NP      LS  +NA  VL  LL+E LSFEIKG
Sbjct: 32  LVPSLKLRTDKDVYRPGESIVVSIEIHNPSGVVDELSKKENAGDVLCPLLVEMLSFEIKG 91

Query: 90  IQKLDSQWFATQKPLPGSKQRRGEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIP 149
           I+KLDSQW+ATQKPLPGSKQRRGE  FLD +   ++SNQIVS+ A K+YV RTELPSI+P
Sbjct: 92  IEKLDSQWYATQKPLPGSKQRRGEHTFLDCATPSIVSNQIVSAGAVKTYVARTELPSIVP 151

Query: 150 PSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLT 209
           PSYRG TIRY YYV+ TLS RWL+LENG + RES++DL ++EAR+PLQIWVTQK +GLL 
Sbjct: 152 PSYRGATIRYFYYVRCTLSGRWLVLENGHSPRESRKDLIELEARIPLQIWVTQKTSGLLI 211

Query: 210 EENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSK 269
           EE  NDGIVP T IQMD+YWKEMDGDS+W RAN+ YDGVEEGYESSRDE+SSVSSYNP K
Sbjct: 212 EEGHNDGIVPNTAIQMDVYWKEMDGDSDWVRANETYDGVEEGYESSRDEVSSVSSYNPMK 271

Query: 270 ENLLKTFGSSLSLQSSTARSSTKDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISP 329
           EN+ K+FGSSLSL S +ARSST   P  EGE   +SS VALP+LS AEV+ DSS D +S 
Sbjct: 272 ENIHKSFGSSLSLHSFSARSST---PYLEGERTSISSYVALPRLSVAEVINDSSLDALSS 328

Query: 330 NKSAAVVSPSQQQKLTKP--ADDITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLL 387
            KS+A +SPS+Q+K TKP  ADD  G S  P  G  +PAASEGFIRGRSYNIR+DDQVLL
Sbjct: 329 QKSSANLSPSEQRKDTKPISADDEAGVSTIP--GTDDPAASEGFIRGRSYNIRLDDQVLL 386

Query: 388 RFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTI 447
           RFSPKNS+STYYFSDMIGGTLTFFHEEGARRCLEV ITLE+SET+NR F HPSRRNS TI
Sbjct: 387 RFSPKNSDSTYYFSDMIGGTLTFFHEEGARRCLEVSITLESSETVNRRFAHPSRRNSLTI 446

Query: 448 TKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEH 507
           TK+QSDHHEVVADLVQTSFLFSIPMDGPMSFSTP+VSVQWALRFEF TTPK+V  TRYEH
Sbjct: 447 TKVQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPHVSVQWALRFEFFTTPKNVDLTRYEH 506

Query: 508 PLLIEGRDKSEWVLPITVHAPPSG-APAGHNRNDKHFSLEPLWVRT 552
           PLLIEGRDK EWVLPITVHA PSG A A H RNDK F+LEPLWVR+
Sbjct: 507 PLLIEGRDKCEWVLPITVHATPSGTAAAAHTRNDKSFTLEPLWVRS 552

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438811|ref|XP_004137181.1| PREDICTED: uncharacterized protein LOC101218523 [Cucumis sativus]

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/554 (66%), Positives = 436/554 (78%), Gaps = 18/554 (3%)

Query: 1   MLGGRFSLFGGGGGGGGGGGGGGSKSNKVANNSKNDGVLPTLKLQTDKNVYTPGDTVFVT 60
           M G RFS+FG G             ++KV  ++K++   P LKL++DK+VY PGD V VT
Sbjct: 1   MFGSRFSIFGTGAAA----------ADKVEKSAKSE-FFPGLKLRSDKDVYRPGDPVVVT 49

Query: 61  VEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDIS 120
           +EIC+ +   D     SLLIE L FEI G+ KLD+QWF+TQKP+PGSKQRRGE  F+D S
Sbjct: 50  IEICSSVPQLD----CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCS 105

Query: 121 ASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQ 180
              ++S+QI+SS A KSYV+R+ LP+ IPPSY+G TIRY+YYVKSTL  RWL  ENG + 
Sbjct: 106 VQSIVSSQIISSGAMKSYVVRSTLPTCIPPSYKGATIRYMYYVKSTLLGRWLSQENGRSH 165

Query: 181 RESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSR 240
           +ES +D  ++EARLPLQ+WVTQK NG+L EE QNDG + + + QMD++WKEM+ D++W R
Sbjct: 166 KESPKDQIEMEARLPLQVWVTQKTNGMLMEEGQNDGDLSSLSFQMDVFWKEMESDTDWIR 225

Query: 241 ANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIPAFEGE 300
           ANDIYDG +EGY+SSRDEISSVSSYNP +E   +TFGSSLSLQSS  RSS K  P  EGE
Sbjct: 226 ANDIYDGTDEGYDSSRDEISSVSSYNPMREPFHRTFGSSLSLQSSAGRSSIKIAPFIEGE 285

Query: 301 LMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTK--PADDITGASPSP 358
            + LSSNVA P++S AEVLY+S ADV SP KS A VSPSQ     K    DD  GA+ SP
Sbjct: 286 RLSLSSNVARPRVSVAEVLYES-ADVASPQKSFAAVSPSQVLNFEKNQSTDDDAGAATSP 344

Query: 359 QAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARR 418
           +   +EP ASEGFIRGRSYNIR+DDQVLLRF PKNS+STYYFSDMIGGTLTFFHEEG RR
Sbjct: 345 RPKTIEPVASEGFIRGRSYNIRVDDQVLLRFCPKNSDSTYYFSDMIGGTLTFFHEEGTRR 404

Query: 419 CLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSF 478
           CLE+ ITLETSET++R F+HPSRRNSPTI K+QSDH+EVVADL+QTSFLFSIPMDGPMSF
Sbjct: 405 CLELSITLETSETVSRRFIHPSRRNSPTIVKVQSDHYEVVADLIQTSFLFSIPMDGPMSF 464

Query: 479 STPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAPAGHNR 538
           STP+VS+QWALRFEF TTPK+V WTRYEHPLLIEGR+KSEWVLPITVHAPPS A    NR
Sbjct: 465 STPHVSLQWALRFEFFTTPKNVDWTRYEHPLLIEGREKSEWVLPITVHAPPSSAATAQNR 524

Query: 539 NDKHFSLEPLWVRT 552
           ND+ FSLEPLW+ +
Sbjct: 525 NDRPFSLEPLWMHS 538

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554424|ref|XP_002518251.1| conserved hypothetical protein [Ricinus communis] gi|223542598|gb|EEF44137.1| conserved hypothetical protein [Ricinus communis]

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/563 (66%), Positives = 431/563 (76%), Gaps = 46/563 (8%)

Query: 1   MLGGRFSLFGGGGGGGGGGGGGGSKSNKVANNSKN-DGVL-----PTLKLQTDKNVYTPG 54
           ML  RFSLFG G             SNKV NN  N D  L     PT+K+Q DK+VY PG
Sbjct: 1   MLTPRFSLFGSG-----------VSSNKVNNNISNPDDALKTEVSPTIKMQLDKDVYRPG 49

Query: 55  DTVFVTVEICNP----LSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQR 110
           D+VFVT++I  P     ++  ++   SLLIE L FEIKGI+KLD QWF+T KPLPGS   
Sbjct: 50  DSVFVTIDISYPSNTETTTLLSSSSCSLLIERLGFEIKGIEKLDPQWFSTHKPLPGSAHS 109

Query: 111 RGEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSAR 170
           RGE  F+  S   L+SNQI+SS A+KSYV+R ELPSI+PP++RG+TIRY YYVK TL  R
Sbjct: 110 RGEHVFMVSSIPSLVSNQILSSAASKSYVVRVELPSILPPTFRGSTIRYFYYVKGTLCGR 169

Query: 171 WLILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWK 230
           WL LENG + RES +DL +++AR+PL IWVTQK NGLL EE+Q+DGIVPATT+Q+D+YWK
Sbjct: 170 WLTLENGHSHRESSKDLIELDARVPLNIWVTQKSNGLLMEEDQSDGIVPATTLQLDVYWK 229

Query: 231 EMDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSS 290
            MDGDSEW+R ND  DGVEEGY+SSRDEISSVSSYNPSKE++ +TFGSSLSLQS  AR+S
Sbjct: 230 AMDGDSEWARVNDNDDGVEEGYDSSRDEISSVSSYNPSKESMHRTFGSSLSLQSFAARTS 289

Query: 291 TKDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKP-AD 349
                        LSSNV  P+LS AEVL+D SADV            SQQQ + KP  +
Sbjct: 290 -------------LSSNVGFPRLSVAEVLHDPSADV-----------SSQQQNIVKPQTE 325

Query: 350 DITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLT 409
           D+ G S +   G  E +ASEGFIRGRSYNIRMDDQVLLRFSPKNS+S YYFSDMIGGTLT
Sbjct: 326 DVVGESSAHGIGTNEASASEGFIRGRSYNIRMDDQVLLRFSPKNSDSNYYFSDMIGGTLT 385

Query: 410 FFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFS 469
           FFHEEG RRCLEV ITLE SETI+R FVH SRRN+P ITK+QSDHHEVVADLVQTSFLFS
Sbjct: 386 FFHEEGCRRCLEVSITLEISETISRRFVHSSRRNAPIITKVQSDHHEVVADLVQTSFLFS 445

Query: 470 IPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPP 529
           +P+DGPMSFSTP+VSVQWALRFEF TTPK+V WTRYEHPLL+EGRDKSEWVLPITVHAPP
Sbjct: 446 VPLDGPMSFSTPHVSVQWALRFEFYTTPKNVDWTRYEHPLLVEGRDKSEWVLPITVHAPP 505

Query: 530 SGAPAGHNRNDKHFSLEPLWVRT 552
            GA A H R+ KHFSLEPLWVRT
Sbjct: 506 PGALAAHTRDAKHFSLEPLWVRT 528

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513087|ref|XP_003626832.1| Retrograde Golgi transport protein RGP1-like protein [Medicago truncatula] gi|355520854|gb|AET01308.1| Retrograde Golgi transport protein RGP1-like protein [Medicago truncatula]

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/554 (65%), Positives = 438/554 (79%), Gaps = 27/554 (4%)

Query: 1   MLGGRFSLFGGGGGGGGGGGGGGSKSNKVANNSKNDGVLPTLKLQTDKNVYTPGDTVFVT 60
           ML GR S FGGG  G               N+SKN+ ++PTLKL+TDK VY PGD V +T
Sbjct: 1   MLKGRLSFFGGGDSGLLD-----------KNSSKNEEIVPTLKLETDKQVYRPGDPVIIT 49

Query: 61  VEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDIS 120
           ++I NP S+G      S L+E LSFEI+GI+KLD+QWFATQKPLPGS+QRRGE  F+D S
Sbjct: 50  IQISNP-SNG-----YSFLMERLSFEIRGIEKLDTQWFATQKPLPGSRQRRGEHVFVDSS 103

Query: 121 ASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQ 180
              L++NQI+++  +KSYV+RT LPSIIPPSY+G+ IRYLYYVKS ++  WLILENG ++
Sbjct: 104 TPILVANQIINAGTSKSYVVRTMLPSIIPPSYKGSNIRYLYYVKSAITGGWLILENGQSR 163

Query: 181 RESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSR 240
            E   D+T +E R+PLQIWV QK +G   +    D IVP TT+Q+DI+WKEMDGD++W R
Sbjct: 164 TEPTNDVTDLEVRIPLQIWVNQKSSGFPLD----DDIVPLTTVQLDIFWKEMDGDADWVR 219

Query: 241 ANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIPAFEGE 300
           ANDIYDGVE+GY+SSRD+ISSVSSYNP KEN+++ FGSSLSL+SS+ARS  +     EG 
Sbjct: 220 ANDIYDGVEDGYDSSRDDISSVSSYNPMKENMVRGFGSSLSLRSSSARSLNR----LEGH 275

Query: 301 LMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTK--PADDITGASPSP 358
              LSSN+ALP+LS AEVL D+ AD +S  KS  +VSP++QQK  K   A+D  G S SP
Sbjct: 276 RTSLSSNIALPRLSVAEVLSDTGADALSTQKSFTMVSPTEQQKFGKQFSAEDDAGVSSSP 335

Query: 359 QAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARR 418
           +AG VE  +SEGFIRGRSYNIR+DDQVLL+FSPKNS+STYYFSDMIGGTLTFFHE+G RR
Sbjct: 336 EAGPVESLSSEGFIRGRSYNIRLDDQVLLKFSPKNSDSTYYFSDMIGGTLTFFHEQGGRR 395

Query: 419 CLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSF 478
           CLE+ +TLETSETINR FVHPSRRNSPTITK+QSDHHEVVADL QTSFLFS+P+DGPM+F
Sbjct: 396 CLEISVTLETSETINRRFVHPSRRNSPTITKVQSDHHEVVADLAQTSFLFSVPVDGPMTF 455

Query: 479 STPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAPAGHNR 538
           STP+VSVQW LRFEF TTPK V WT+YEHPLLIEGR+K+EWVLPITVHAPP   P   +R
Sbjct: 456 STPHVSVQWVLRFEFYTTPKFVDWTKYEHPLLIEGREKTEWVLPITVHAPPPRTPTSGSR 515

Query: 539 NDKHFSLEPLWVRT 552
           N+K FSL+P+WV T
Sbjct: 516 NEKLFSLDPMWVHT 529

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330146|ref|NP_175432.2| uncharacterized protein [Arabidopsis thaliana] gi|20268711|gb|AAM14059.1| unknown protein [Arabidopsis thaliana] gi|21689887|gb|AAM67504.1| unknown protein [Arabidopsis thaliana] gi|332194396|gb|AEE32517.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/552 (64%), Positives = 407/552 (73%), Gaps = 20/552 (3%)

Query: 1   MLGGRFSLFGGGGGGGGGGGGGGSKSNKVANNSKNDGVLPTLKLQTDKNVYTPGDTVFVT 60
           ML  RFS  G G         G S S           + P+L +QTDK+VY PGD++FVT
Sbjct: 1   MLSSRFSFLGIGSSSEVNDSVGVSGSK----------IKPSLSVQTDKDVYRPGDSIFVT 50

Query: 61  VEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDIS 120
           +E+ N   S DNA   S+L+E LSFE+KG++KLD QWF+TQKP PGSK RRGE  FLD S
Sbjct: 51  IEVAN---SHDNASNPSILVEKLSFEVKGLEKLDIQWFSTQKPSPGSKGRRGEHIFLDSS 107

Query: 121 ASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQ 180
              LISNQI+S  A  + ++R  LP IIPPSY+G T+RYLYY+KSTL  RW+ LEN    
Sbjct: 108 TPSLISNQILSPGAKMTLMVRAILPQIIPPSYKGATLRYLYYIKSTLCGRWMALENSQFY 167

Query: 181 RESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSR 240
           ++S +D  +VE R+PLQ+WV QK NGLL EE+Q DGIVP +TIQ +IYWKEMDGDSEW+R
Sbjct: 168 KDSTQDFIEVETRIPLQVWVIQKNNGLLLEEDQIDGIVPTSTIQTEIYWKEMDGDSEWTR 227

Query: 241 ANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIPAFEGE 300
           AND YD  E+GY+SSRDEISSVSSY P+K NL +TFGSSLSL S   R S KD    E E
Sbjct: 228 ANDAYDSGEDGYDSSRDEISSVSSY-PNKSNLNRTFGSSLSLNSG-PRLSMKDTSYVE-E 284

Query: 301 LMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKPADDITGASPSPQA 360
            +  S  + L QLSAA V YDS  DV SP+KS+  V PSQQ K T  A    GAS SP A
Sbjct: 285 RVGSSPKMMLSQLSAAVVSYDSGTDVSSPHKSSNSVVPSQQPKQTNGA----GASMSPGA 340

Query: 361 GVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCL 420
           G  EP  SEGF RGRSYNIRMDDQVLLRFSPKN++STYYFSD IGGTLTFFHEEG RRCL
Sbjct: 341 GAREPVPSEGFTRGRSYNIRMDDQVLLRFSPKNADSTYYFSDTIGGTLTFFHEEGTRRCL 400

Query: 421 EVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFST 480
           EV +TLET ETINR FVHPSRRNSPT+TK+QSDHHEVVADL+QTSFLFSIP DGPMSFST
Sbjct: 401 EVSVTLETLETINRRFVHPSRRNSPTLTKVQSDHHEVVADLIQTSFLFSIPTDGPMSFST 460

Query: 481 PYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAPAGHNRND 540
           P VSVQW LRFEFLTTPK V  +RYEHPLL+  R+KSEWVLPITVHAPP       NR D
Sbjct: 461 PRVSVQWILRFEFLTTPKSVDLSRYEHPLLVPEREKSEWVLPITVHAPPPRTSGAQNRGD 520

Query: 541 KHFSLEPLWVRT 552
           K F LEP W+R+
Sbjct: 521 KLFGLEPSWIRS 532

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847350|ref|XP_002891556.1| hypothetical protein ARALYDRAFT_891939 [Arabidopsis lyrata subsp. lyrata] gi|297337398|gb|EFH67815.1| hypothetical protein ARALYDRAFT_891939 [Arabidopsis lyrata subsp. lyrata]

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/552 (63%), Positives = 405/552 (73%), Gaps = 25/552 (4%)

Query: 1   MLGGRFSLFGGGGGGGGGGGGGGSKSNKVANNSKNDGVLPTLKLQTDKNVYTPGDTVFVT 60
           ML  RFS  G G    G  G                 + P+L +QTDK+VY PGD++FVT
Sbjct: 1   MLSSRFSFLGIGSDSVGVSGSK---------------IKPSLTVQTDKDVYRPGDSIFVT 45

Query: 61  VEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDIS 120
           +E+ N   S +N    S+L+E LSFE+KG++KLD QWF+TQKP PGSK RRGE  FLD S
Sbjct: 46  IEVGN---SHENESNPSILVEKLSFEVKGLEKLDIQWFSTQKPSPGSKGRRGEHIFLDSS 102

Query: 121 ASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQ 180
              LISNQI+S  A  + ++R  LP IIPPSY+G T+RYLYY+KSTL  RW+ LEN    
Sbjct: 103 TPSLISNQILSPGAKMTLMVRAILPQIIPPSYKGATLRYLYYIKSTLCGRWMALENSQFY 162

Query: 181 RESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSR 240
           ++S +D  +VE R+PLQ+WV QK NGLL EE+Q DGIVP +TIQ DIYWKEMDGDSEW+R
Sbjct: 163 KDSTKDFIEVETRIPLQVWVIQKNNGLLLEEDQTDGIVPTSTIQTDIYWKEMDGDSEWTR 222

Query: 241 ANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIPAFEGE 300
           AND YD  E+GY+SSRDEISSVSSY P+K NL +TFGSSLSL S   R S KD    E E
Sbjct: 223 ANDAYDSGEDGYDSSRDEISSVSSY-PNKSNLNRTFGSSLSLNSG-PRLSMKDTSYVE-E 279

Query: 301 LMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKPADDITGASPSPQA 360
            +  S  + L QLSAA V YDS  DV SP+KS+  V PSQQ K T  A    GAS SP+A
Sbjct: 280 RVGSSPKMMLSQLSAAVVSYDSGTDVSSPHKSSNSVVPSQQPKQTNGA----GASMSPEA 335

Query: 361 GVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCL 420
           G  EP  SEGF RGRSYNIRMDDQVLLRFSPKN++STYYFSD IGGTLTFFHEEG RRCL
Sbjct: 336 GAKEPVPSEGFTRGRSYNIRMDDQVLLRFSPKNADSTYYFSDTIGGTLTFFHEEGTRRCL 395

Query: 421 EVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFST 480
           EV +TLET ETINR FVHPSRRNSPT+TK+QSDHHEVVADL+QTSFLFSIP DGPMSFST
Sbjct: 396 EVSVTLETLETINRRFVHPSRRNSPTLTKVQSDHHEVVADLIQTSFLFSIPTDGPMSFST 455

Query: 481 PYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAPAGHNRND 540
           P VSVQW LRFEFLTTPK V  +RYEHPLL+  R+KSEWVLPITVHAPP        R D
Sbjct: 456 PRVSVQWILRFEFLTTPKSVDLSRYEHPLLVPEREKSEWVLPITVHAPPPRTSGAQTRGD 515

Query: 541 KHFSLEPLWVRT 552
           K F LEP W+R+
Sbjct: 516 KFFGLEPSWIRS 527

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522946|ref|XP_003530103.1| PREDICTED: uncharacterized protein LOC100812423 [Glycine max]

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/551 (64%), Positives = 424/551 (76%), Gaps = 49/551 (8%)

Query: 38  VLPTLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQW 97
           V PTLKL+TD+ VY PGD V VT++I NP      A   S L+E L FEI+GI+KLD+QW
Sbjct: 37  VQPTLKLETDRQVYRPGDPVIVTIQISNP------AKGYSFLMERLGFEIRGIEKLDTQW 90

Query: 98  FATQKPLPGSKQRRGEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTI 157
           FATQKP+PGSKQ+RGE AFL+ S   L++NQIV++ A+KSYV+RT+LPSIIPPSY+G++I
Sbjct: 91  FATQKPMPGSKQKRGEHAFLECSTPVLVANQIVNAGASKSYVVRTQLPSIIPPSYKGSSI 150

Query: 158 RYLYYVKSTLSARWLILENGLTQRESKRDLTQV--------------------------- 190
           RYLYY+KS L+  W+I ENG ++ E K D+T +                           
Sbjct: 151 RYLYYIKSALTGEWIIYENGQSRAEIKNDVTDLCTVEERPESVSGCPLCFVVPVIVAAML 210

Query: 191 -------EARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRAND 243
                  E R+PLQ+W+ QK +        +D IVP TT+Q+DI+WKEMDGD++W RAND
Sbjct: 211 EMSWPLKEVRIPLQLWINQKSSAF----PMDDDIVPLTTVQLDIFWKEMDGDADWIRAND 266

Query: 244 IYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIPAFEGELMR 303
           +YDGVE+GY+SSRD+ISSVSSYNP +E+L + FGSSLSL+SS+ARS ++D    EG    
Sbjct: 267 MYDGVEDGYDSSRDDISSVSSYNPMRESLHRGFGSSLSLRSSSARSLSRDASTLEGFRTS 326

Query: 304 LSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTK--PADDITGASPSPQAG 361
           LSSN+ALP+LS AEVL DS ADV+S  KS A+VSP++QQKL K   A+D  G S SP+AG
Sbjct: 327 LSSNMALPRLSVAEVLSDSGADVLSTQKSFAIVSPNEQQKLRKTFSAEDDVGVSSSPEAG 386

Query: 362 VVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLE 421
               AA EGFIRGRSYNIR+DDQVLL+FSP+NS+STYYFSDMIGGTLTFFHE GARRCLE
Sbjct: 387 ATFSAA-EGFIRGRSYNIRLDDQVLLKFSPRNSDSTYYFSDMIGGTLTFFHE-GARRCLE 444

Query: 422 VLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTP 481
           + ITLETSETINR FVHPSRRNSPTITK+QSDHHEVVADLVQTSFLFSIPMDGPMSFST 
Sbjct: 445 ISITLETSETINRRFVHPSRRNSPTITKVQSDHHEVVADLVQTSFLFSIPMDGPMSFSTQ 504

Query: 482 YVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHA-PPSGAPAGHNRND 540
           +VSVQW LRFEF TTPKHV W +YEHPLLIEGR+K+EWVLPITVHA PP GAPA   R++
Sbjct: 505 HVSVQWVLRFEFFTTPKHVDWKKYEHPLLIEGREKTEWVLPITVHAPPPRGAPASGTRSE 564

Query: 541 KHFSLEPLWVR 551
           K FSL+P+WV 
Sbjct: 565 KLFSLDPMWVH 575

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8569091|gb|AAF76436.1|AC015445_3 Contains a legume lectins beta domain PF|00139 [Arabidopsis thaliana]

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/552 (61%), Positives = 391/552 (70%), Gaps = 46/552 (8%)

Query: 1   MLGGRFSLFGGGGGGGGGGGGGGSKSNKVANNSKNDGVLPTLKLQTDKNVYTPGDTVFVT 60
           ML  RFS  G G         G S S           + P+L +QTDK+VY PGD++FVT
Sbjct: 1   MLSSRFSFLGIGSSSEVNDSVGVSGSK----------IKPSLSVQTDKDVYRPGDSIFVT 50

Query: 61  VEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDIS 120
           +E+ N   S DNA   S+L+E LSFE+KG++KLD QWF+TQKP PGSK RR         
Sbjct: 51  IEVAN---SHDNASNPSILVEKLSFEVKGLEKLDIQWFSTQKPSPGSKGRR--------- 98

Query: 121 ASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQ 180
                             ++R  LP IIPPSY+G T+RYLYY+KSTL  RW+ LEN    
Sbjct: 99  -----------------VMVRAILPQIIPPSYKGATLRYLYYIKSTLCGRWMALENSQFY 141

Query: 181 RESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSR 240
           ++S +D  +VE R+PLQ+WV QK NGLL EE+Q DGIVP +TIQ +IYWKEMDGDSEW+R
Sbjct: 142 KDSTQDFIEVETRIPLQVWVIQKNNGLLLEEDQIDGIVPTSTIQTEIYWKEMDGDSEWTR 201

Query: 241 ANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIPAFEGE 300
           AND YD  E+GY+SSRDEISSVSSY P+K NL +TFGSSLSL S   R S KD    E E
Sbjct: 202 ANDAYDSGEDGYDSSRDEISSVSSY-PNKSNLNRTFGSSLSLNSG-PRLSMKDTSYVE-E 258

Query: 301 LMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKPADDITGASPSPQA 360
            +  S  + L QLSAA V YDS  DV SP+KS+  V PSQQ K T  A    GAS SP A
Sbjct: 259 RVGSSPKMMLSQLSAAVVSYDSGTDVSSPHKSSNSVVPSQQPKQTNGA----GASMSPGA 314

Query: 361 GVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCL 420
           G  EP  SEGF RGRSYNIRMDDQVLLRFSPKN++STYYFSD IGGTLTFFHEEG RRCL
Sbjct: 315 GAREPVPSEGFTRGRSYNIRMDDQVLLRFSPKNADSTYYFSDTIGGTLTFFHEEGTRRCL 374

Query: 421 EVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFST 480
           EV +TLET ETINR FVHPSRRNSPT+TK+QSDHHEVVADL+QTSFLFSIP DGPMSFST
Sbjct: 375 EVSVTLETLETINRRFVHPSRRNSPTLTKVQSDHHEVVADLIQTSFLFSIPTDGPMSFST 434

Query: 481 PYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAPAGHNRND 540
           P VSVQW LRFEFLTTPK V  +RYEHPLL+  R+KSEWVLPITVHAPP       NR D
Sbjct: 435 PRVSVQWILRFEFLTTPKSVDLSRYEHPLLVPEREKSEWVLPITVHAPPPRTSGAQNRGD 494

Query: 541 KHFSLEPLWVRT 552
           K F LEP W+R+
Sbjct: 495 KLFGLEPSWIRS 506

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476616|ref|XP_004154786.1| PREDICTED: uncharacterized protein LOC101223298 [Cucumis sativus]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 297/416 (71%), Positives = 344/416 (82%), Gaps = 3/416 (0%)

Query: 139 VIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQI 198
           V+R+ LP+ IPPSY+G TIRY+YYVKSTL  RWL  ENG + +ES +D  ++EARLPLQ+
Sbjct: 13  VVRSTLPTCIPPSYKGATIRYMYYVKSTLLGRWLSQENGRSHKESPKDQIEMEARLPLQV 72

Query: 199 WVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIYDGVEEGYESSRDE 258
           WVTQK NG+L EE QNDG + + + QMD++WKEM+ D++W RANDIYDG +EGY+SSRDE
Sbjct: 73  WVTQKTNGMLMEEGQNDGDLSSLSFQMDVFWKEMESDTDWIRANDIYDGTDEGYDSSRDE 132

Query: 259 ISSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIPAFEGELMRLSSNVALPQLSAAEV 318
           ISSVSSYNP +E   +TFGSSLSLQSS  RSS K  P  EGE + LSSNVA P++S AEV
Sbjct: 133 ISSVSSYNPMREPFHRTFGSSLSLQSSAGRSSIKIAPFIEGERLSLSSNVARPRVSVAEV 192

Query: 319 LYDSSADVISPNKSAAVVSPSQQQKLTK--PADDITGASPSPQAGVVEPAASEGFIRGRS 376
           LY+S ADV SP KS A VSPSQ     K    DD  GA+ SP+   +EP ASEGFIRGRS
Sbjct: 193 LYES-ADVASPQKSFAAVSPSQVLNFEKNQSTDDDAGAATSPRPKTIEPVASEGFIRGRS 251

Query: 377 YNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWF 436
           YNIR+DDQVLLRF PKNS+STYYFSDMIGGTLTFFHEEG RRCLE+ ITLETSET++R F
Sbjct: 252 YNIRVDDQVLLRFCPKNSDSTYYFSDMIGGTLTFFHEEGTRRCLELSITLETSETVSRRF 311

Query: 437 VHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTT 496
           +HPSRRNSPTI K+QSDH+EVVADL+QTSFLFSIPMDGPMSFSTP+VS+QWALRFEF TT
Sbjct: 312 IHPSRRNSPTIVKVQSDHYEVVADLIQTSFLFSIPMDGPMSFSTPHVSLQWALRFEFFTT 371

Query: 497 PKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAPAGHNRNDKHFSLEPLWVRT 552
           PK+V WTRYEHPLLIEGR+KSEWVLPITVHAPPS A    NRND+ FSLEPLW+ +
Sbjct: 372 PKNVDWTRYEHPLLIEGREKSEWVLPITVHAPPSSAATAQNRNDRPFSLEPLWMHS 427

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	552
TAIR|locus:2031065	532	AT1G50120 "AT1G50120" [Arabido	0.914	0.949	0.621	1.4e-165
DICTYBASE|DDB_G0277397	713	DG1122 "E set domain-containin	0.197	0.152	0.357	6.6e-16
MGI|MGI:1915956	391	Rgp1 "RGP1 retrograde golgi tr	0.177	0.250	0.301	5.1e-07
ZFIN|ZDB-GENE-040718-352	386	rgp1 "RGP1 retrograde golgi tr	0.221	0.316	0.248	2.3e-05

TAIR|locus:2031065 AT1G50120 "AT1G50120" [Arabidopsis thaliana (taxid:3702)]

 Score = 1611 (572.2 bits), Expect = 1.4e-165, P = 1.4e-165
 Identities = 320/515 (62%), Positives = 368/515 (71%)

Query:    38 VLPTLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVXXXXXXXXXXXXXKGIQKLDSQW 97
             + P+L +QTDK+VY PGD++FVT+E+ N   S DNA              KG++KLD QW
Sbjct:    28 IKPSLSVQTDKDVYRPGDSIFVTIEVAN---SHDNASNPSILVEKLSFEVKGLEKLDIQW 84

Query:    98 FATQKPLPGSKQRRGEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTI 157
             F+TQKP PGSK RRGE  FLD S   LISNQI+S  A  + ++R  LP IIPPSY+G T+
Sbjct:    85 FSTQKPSPGSKGRRGEHIFLDSSTPSLISNQILSPGAKMTLMVRAILPQIIPPSYKGATL 144

Query:   158 RYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGI 217
             RYLYY+KSTL  RW+ LEN    ++S +D  +VE R+PLQ+WV QK NGLL EE+Q DGI
Sbjct:   145 RYLYYIKSTLCGRWMALENSQFYKDSTQDFIEVETRIPLQVWVIQKNNGLLLEEDQIDGI 204

Query:   218 VPATTIQMDIYWKEMDGDSEWSRANDIYDGVEEGYEXXXXXXXXXXXYNPSKENLLKTFG 277
             VP +TIQ +IYWKEMDGDSEW+RAND YD  E+GY+           Y P+K NL +TFG
Sbjct:   205 VPTSTIQTEIYWKEMDGDSEWTRANDAYDSGEDGYDSSRDEISSVSSY-PNKSNLNRTFG 263

Query:   278 XXXXXXXXXXXXXXKDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVS 337
                           KD    E E +  S  + L QLSAA V YDS  DV SP+KS+  V 
Sbjct:   264 SSLSLNSGPRLSM-KDTSYVE-ERVGSSPKMMLSQLSAAVVSYDSGTDVSSPHKSSNSVV 321

Query:   338 PSQQQKLTKPADDITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSEST 397
             PSQQ K T  A    GAS SP AG  EP  SEGF RGRSYNIRMDDQVLLRFSPKN++ST
Sbjct:   322 PSQQPKQTNGA----GASMSPGAGAREPVPSEGFTRGRSYNIRMDDQVLLRFSPKNADST 377

Query:   398 YYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEV 457
             YYFSD IGGTLTFFHEEG RRCLEV +TLET ETINR FVHPSRRNSPT+TK+QSDHHEV
Sbjct:   378 YYFSDTIGGTLTFFHEEGTRRCLEVSVTLETLETINRRFVHPSRRNSPTLTKVQSDHHEV 437

Query:   458 VADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKS 517
             VADL+QTSFLFSIP DGPMSFSTP VSVQW LRFEFLTTPK V  +RYEHPLL+  R+KS
Sbjct:   438 VADLIQTSFLFSIPTDGPMSFSTPRVSVQWILRFEFLTTPKSVDLSRYEHPLLVPEREKS 497

Query:   518 EWVLPITVHAPPSGAPAGHNRNDKHFSLEPLWVRT 552
             EWVLPITVHAPP       NR DK F LEP W+R+
Sbjct:   498 EWVLPITVHAPPPRTSGAQNRGDKLFGLEPSWIRS 532

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

DICTYBASE|DDB_G0277397 DG1122 "E set domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 187 (70.9 bits), Expect = 6.6e-16, Sum P(3) = 6.6e-16
 Identities = 40/112 (35%), Positives = 63/112 (56%)

Query:   395 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDH 454
             ++ +   D + GT  F        C ++LI LE  E I+  ++  +R ++  I K+  + 
Sbjct:   327 KTAFSLGDSVHGTFDF--SIATIPCFKILIKLECEEIIDSKYLQSTRGSNKPIRKLYGEL 384

Query:   455 HEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYE 506
             HE   +L QT F+F IP++    FST YVSV+W+LRFEF+T P    +T Y+
Sbjct:   385 HEFTTNLRQTHFIFHIPVEASPEFSTKYVSVKWSLRFEFVT-PMKSSYTPYQ 435

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1915956 Rgp1 "RGP1 retrograde golgi transport homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 122 (48.0 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
 Identities = 32/106 (30%), Positives = 53/106 (50%)

Query:   395 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNS---PTITKI- 450
             +S Y   + + GTL     EG   CL+  ++L+T E +   +    RR +   P+++ + 
Sbjct:   230 KSVYRLGEDVVGTLNL--GEGTVACLQFSVSLQTEERVQPEYQR--RRGTGVAPSVSHVT 285

Query:   451 QSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTT 496
              + H E      +TSF   IP+     F T  VS++W L FEF+T+
Sbjct:   286 HARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEFVTS 331

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040718-352 rgp1 "RGP1 retrograde golgi transport homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 106 (42.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
 Identities = 36/145 (24%), Positives = 62/145 (42%)

Query:   395 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDH 454
             ++ Y   + + GT TF   EG   C++  ++L++ E +   +    RR    ++      
Sbjct:   229 KTVYRLGEDVIGTFTF--SEGDIPCIQYSVSLQSEEEVQEQY---QRRPGQAVSVTGHGR 283

Query:   455 H-EVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQ------------ 501
             H E       + F   +P++    F+T  V+++W L FEF+T  + V+            
Sbjct:   284 HLESCLHTASSHFSLPVPLNVTPGFTTDIVTLRWRLHFEFVTAREPVEAPVVLQNQSEVT 343

Query:   502 -WTRYEHPLLIEGRDKSEWVLPITV 525
              WT  EH  +    D   W LPI V
Sbjct:   344 VWTGAEHVDV----DTFSWDLPIKV 364

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00070766 hypothetical protein (533 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	552
pfam08737	402	pfam08737, Rgp1, Rgp1	3e-20
pfam02752	136	pfam02752, Arrestin_C, Arrestin (or S-antigen), C-	0.001

>gnl|CDD|219995 pfam08737, Rgp1, Rgp1

 Score = 92.5 bits (230), Expect = 3e-20
 Identities = 79/382 (20%), Positives = 136/382 (35%), Gaps = 73/382 (19%)

Query: 116 FLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILE 175
            L    S L S+  ++   +K++  +  LP  +PPSYRG  I+  Y  K T+        
Sbjct: 90  LLSTPQSLLFSDLRLAPGESKTFHFKFTLPKDLPPSYRGKAIKISY--KLTVG------- 140

Query: 176 NGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGD 235
              TQR    +      R+P+++       G                +Q D+    +  D
Sbjct: 141 ---TQRGPAVNQKVKSLRVPIRVLPYVNAGGEQ--------------LQHDLMKPIIILD 183

Query: 236 SEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIP 295
            E          VE   E SR   S                      + + ++ S+  + 
Sbjct: 184 DEAR--------VEVKSEESRAPSSPFLE------------------RHAQSKKSSSTLE 217

Query: 296 AFEGELMRL-SSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKPADDITGA 354
            F   L  L SS             Y+     +     ++    S +   ++P   +   
Sbjct: 218 EFLEYLKELLSSR-----------SYNMPDSTLEDLLKSSQFGKSLRTSDSEPPLSVKDQ 266

Query: 355 SPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEE 414
            P+  + ++    +        Y I  + + +   S   S+  Y   + I GT+ F   +
Sbjct: 267 IPNAISNLLSQLQNP-----TRYQISRNGEKVATVSL--SKPAYRLGEDIVGTIDFSPGD 319

Query: 415 GARRCLEVLITLETSETINRWFVHPSRRNSPTIT-KIQSDHHEVVADLVQTSFLFSIPMD 473
               C  V  +LET E +N  +   S  ++   T ++ ++HHE   D  + SF   IP  
Sbjct: 320 LIP-CYGVSASLETEELVNPKYAVRSNASANRPTRRVHAEHHESCLDSRRISFSLPIPKS 378

Query: 474 GPMSFSTPYVSVQWALRFEFLT 495
               F T  V ++W LRFEF+T
Sbjct: 379 ATPQFQTDIVQLKWRLRFEFVT 400

Rgp1 forms heterodimer with Ric1 (pfam07064) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor. Length = 402

>gnl|CDD|217215 pfam02752, Arrestin_C, Arrestin (or S-antigen), C-terminal domain

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 40/162 (24%)

Query: 41  TLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFAT 100
           +L +   K  Y PG+T+ +TVEI       DN   SS  I+ +   +  +Q++    +  
Sbjct: 6   SLSVSLPKKGYVPGETIPITVEI-------DN--QSSKKIKKIKISL--VQQVT---YKA 51

Query: 101 QKPLPGSKQRRGEFAFLDISASKLISNQIVSSDATKSYVIRTEL--PSIIPPSYRGTT-- 156
           + PL  +K      A       K  S   V   ++  +     L  P+ +PPS       
Sbjct: 52  KTPLRRTKNEERVVA-------KEESGG-VEPGSSDKFEKELSLQIPTSLPPSSTTKCKI 103

Query: 157 IRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQI 198
           I+  Y +K T+       E              +   LP+ I
Sbjct: 104 IKVSYKLKVTVDLSGSHSE--------------LRLELPITI 131

Ig-like beta-sandwich fold. Scop reports duplication with N-terminal domain. Length = 136

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	552
PF08737	415	Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterod	100.0
KOG4469	391	consensus Uncharacterized conserved protein [Funct	100.0
PF00339	149	Arrestin_N: Arrestin (or S-antigen), N-terminal do	98.48
PF02752	136	Arrestin_C: Arrestin (or S-antigen), C-terminal do	98.38
KOG3780	427	consensus Thioredoxin binding protein TBP-2/VDUP1	98.11
PF02752	136	Arrestin_C: Arrestin (or S-antigen), C-terminal do	97.81
PF00339	149	Arrestin_N: Arrestin (or S-antigen), N-terminal do	96.32
PF07070	218	Spo0M: SpoOM protein; InterPro: IPR009776 This fam	95.94
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	92.69
KOG3780	427	consensus Thioredoxin binding protein TBP-2/VDUP1	88.82
PF08737	415	Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterod	84.82
PF03643	275	Vps26: Vacuolar protein sorting-associated protein	83.41
PF07070	218	Spo0M: SpoOM protein; InterPro: IPR009776 This fam	80.33

>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor []

Probab=100.00  E-value=1.1e-52  Score=441.75  Aligned_cols=314  Identities=26%  Similarity=0.363  Sum_probs=205.4

Q ss_pred             CCCccccccEEEeccCcceeeeccccCCCCeeEEEEEEecCCCCCCCCccceEEEEEEE-EEEEeeeeEEeccCcccccc
Q 008822          105 PGSKQRRGEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYV-KSTLSARWLILENGLTQRES  183 (552)
Q Consensus       105 ~~skq~rge~if~~~~~~~Lvsd~~l~~g~tk~y~vr~~LP~~lPPSyRG~~vRy~Y~i-~at~~g~~~~~~ng~~~~~s  183 (552)
                      ......++.-+|++.++ +||||++|+|||+|+|.|+++||..|||||||.+|||.|+| .+++++.             
T Consensus        91 ~~~~~~~~~p~~~t~~~-iLf~dl~L~pge~k~f~~~~~lP~~lPPsy~g~~i~~~Y~l~vg~~~~~-------------  156 (415)
T PF08737_consen   91 RGELSSKSIPIFSTPQS-ILFSDLRLAPGESKSFHFSFTLPKDLPPSYRGKAIKISYSLVVGTQRGS-------------  156 (415)
T ss_pred             ccccccCcceEEecCCc-eEEEeeEECCCCcEEEEEEEeCCCCCCCCCcCcEEEEEEEEEEEEEEcC-------------
Confidence            34457889999999999 99999999999999999999999999999999999999999 8888822             


Q ss_pred             cccccccccccceEEEEeccCCCcccccccCCCCCCccccccccccc--ccCCCcccccccccccccccccccccccccc
Q 008822          184 KRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWK--EMDGDSEWSRANDIYDGVEEGYESSRDEISS  261 (552)
Q Consensus       184 ~~~~~~l~~RiPi~V~~~q~~~~~~~~~~~~~~~~p~~~~~~~i~w~--e~~~~~~~~~a~~~~~~~e~g~~ss~~e~s~  261 (552)
                      ..+.....+|||||||..++..|....-+     |.-|.+..+--|.  ..+.+..|.....           +....+ 
T Consensus       157 ~~~~~~~~~~~Pi~v~~~v~~~g~~l~~d-----L~~p~i~l~~~~~v~~~~~~~~~~~~~~-----------~~~~~~-  219 (415)
T PF08737_consen  157 SVNSKVKSIRVPIRVLPSVNSSGEQLQHD-----LMSPYIILRDEARVEVVDSDSKRPPSSF-----------SISSFS-  219 (415)
T ss_pred             CCCcceEEEEeCEEEeeeecCCccccccc-----cCCCccccCccceEEccccccccccCcc-----------cccccc-
Confidence            23444556999999999999887764432     2222111111122  2222222211111           000000 


Q ss_pred             cCCCCCcc---cccccccCCcccccccccccC--CCCCCcccccccccccCCcccccccceeccCCCCCccCCccccccc
Q 008822          262 VSSYNPSK---ENLLKTFGSSLSLQSSTARSS--TKDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVV  336 (552)
Q Consensus       262 ~~s~~p~~---~~~~~~~g~~l~~~s~~~~~~--~~~~p~~~~~r~~~~~~~~~~~l~~a~~~~d~~~~~~s~~~~~~~~  336 (552)
                         ..+..   +.....|. .|     ..+..  +.++-.++..+....            ...+.......+..+....
T Consensus       220 ---~~~~~~~~~~fl~~~~-~L-----l~s~~~~~~~~~~~~~~~~~s~------------~~~~~~~~~~~~~~~~~~~  278 (415)
T PF08737_consen  220 ---SKKSESSKESFLQYVD-EL-----LESNSNNMPDISTLEDLLSPSQ------------FSMSSEDSDSEPSYSYKDQ  278 (415)
T ss_pred             ---cCCchhhHHHHHHHHH-HH-----Hhcccccccccccccccccccc------------CCccccccccccccchhhh
Confidence               00000   01111110 00     00000  000001110000000            0000000000000000000


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCccccccccccCCCcceEEEEeCCEEEEEEEccCCCcceecCCcEEEEEEecCCCCc
Q 008822          337 SPSQQQKLTKPADDITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGA  416 (552)
Q Consensus       337 ~~~~~~~~~~~~~~~~g~~~~p~~~~l~pqls~g~~~~ksY~I~rng~~VarlsLs~pkpaYrLGEdI~GtlDF~~~~~~  416 (552)
                      ++..                   +..+.++..   + +++|+|++||++||+|+|.  ||+||+||||.|+|||++.+ .
T Consensus       279 I~~~-------------------~~~~~~~~~---~-~~~y~I~~n~~~va~~~Ls--K~~yrlGE~I~g~idf~~~~-~  332 (415)
T PF08737_consen  279 IPSA-------------------ISNLLSQSR---N-PNSYNIRRNGQRVARLSLS--KPAYRLGEDIVGTIDFNDAS-T  332 (415)
T ss_pred             hhhh-------------------hhhhccccc---C-CcEEEEEECCeEEEEEEec--CCCcccCCeEEEEEEcCCCC-c
Confidence            0000                   012333333   5 9999999999999999997  89999999999999997432 4


Q ss_pred             eeEEEEEEEEEEeeeecCCccCCCCC-CCCceeeEEEeeeeeecccc-eeeEEecCCCCCCCceEeCceeEEEEEEEEEE
Q 008822          417 RRCLEVLITLETSETINRWFVHPSRR-NSPTITKIQSDHHEVVADLV-QTSFLFSIPMDGPMSFSTPYVSVQWALRFEFL  494 (552)
Q Consensus       417 irC~qVSvsLESeE~Inp~~~~~S~~-s~~~~rkvhae~hE~cld~~-~T~F~L~IP~~aTPqF~Td~VsLkW~LRFEFV  494 (552)
                      +||++|+|+||++|+|+++|++++.. ..++++++|+++||+|+|.+ +++|.|+||+++||+|+|++|+|||+||||||
T Consensus       333 ~~c~~v~~~LEs~E~v~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~f~l~IP~~~tp~F~T~~v~lkW~LrfeFv  412 (415)
T PF08737_consen  333 IPCYQVSASLESEETVNPSYAVRSSAKINRVTRKVHAEHHEICLDSRSRTSFSLPIPLSATPQFQTSGVSLKWRLRFEFV  412 (415)
T ss_pred             ceeEEEEEEEEEEEEeCchhcccccccccccEEEEEEEEeeeecCCcceEEEEeeCCCCCCCceEeCCEEEEEEEEEEEE
Confidence            99999999999999999999776544 47889999999999999999 99999999999999999999999999999999


Q ss_pred             ec
Q 008822          495 TT  496 (552)
Q Consensus       495 ts  496 (552)
                      ++
T Consensus       413 ~~  414 (415)
T PF08737_consen  413 TS  414 (415)
T ss_pred             ec
Confidence            85

>KOG4469 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.9e-48  Score=382.69  Aligned_cols=329  Identities=26%  Similarity=0.415  Sum_probs=248.4

Q ss_pred             eeeeCCCeEEEEEEEecCCCCCCcccchhhhhccceEE---EEEEEeccCcceeecCC-------CCC-------Ccccc
Q 008822           49 NVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFE---IKGIQKLDSQWFATQKP-------LPG-------SKQRR  111 (552)
Q Consensus        49 ~vY~PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~e---i~g~ek~D~q~~~~~~p-------l~~-------skq~r  111 (552)
                      -||..||..+|-|.+.||--+...    +..-|-|+|+   |||.-...-+.++-..|       -|.       -...|
T Consensus        12 pvflagealecvvtvtnplpptat----sassealawasaqihcqfhasesrvalpppdssqpdvqpdsqtvflphrger   87 (391)
T KOG4469|consen   12 PVFLAGEALECVVTVTNPLPPTAT----SASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGER   87 (391)
T ss_pred             CeeecccceEEEEEecCCCCCccc----ccchhHHHhhhhheeEEeecccceeccCCCCCCCCCCCCCceeEecccCCcc
Confidence            589999999999999999844322    3556788887   99976665555553221       111       12457


Q ss_pred             ccEEEeccCcceeeeccccCCCCeeEEEEEEecCCCCCCCCccceEEEEEEE-EEEEeeeeEEeccCccccccccccccc
Q 008822          112 GEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYV-KSTLSARWLILENGLTQRESKRDLTQV  190 (552)
Q Consensus       112 ge~if~~~~~~~Lvsd~~l~~g~tk~y~vr~~LP~~lPPSyRG~~vRy~Y~i-~at~~g~~~~~~ng~~~~~s~~~~~~l  190 (552)
                      |.-|.++.++ ||+||+.|-||++|+|.|.+.||-.-||||||++|+|.|++ ++-+|            ++|...+   
T Consensus        88 gqcilstppk-ilfcdlrldpgesksysysevlpiegppsfrgqsvkyvykltigcqr------------vnspitl---  151 (391)
T KOG4469|consen   88 GQCILSTPPK-ILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTIGCQR------------VNSPITL---  151 (391)
T ss_pred             cceEecCCCc-eEEEEeecCCCccccccceeeeeccCCCccCCceeEEEEEEEeeeEe------------cCCcceE---
Confidence            7788899999 99999999999999999999999999999999999999999 77777            5566666   


Q ss_pred             ccccceEEEEeccCCCcccccccCCCCCCcccccccccccccCCCcccccccccccccccccccccccccccCCCCCccc
Q 008822          191 EARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKE  270 (552)
Q Consensus       191 ~~RiPi~V~~~q~~~~~~~~~~~~~~~~p~~~~~~~i~w~e~~~~~~~~~a~~~~~~~e~g~~ss~~e~s~~~s~~p~~~  270 (552)
                       +|+|+||.+-                   +-+|. +++..                        ++.+.|   .     
T Consensus       152 -lrvplrvlvl-------------------tglqd-vrfpq------------------------deavap---s-----  178 (391)
T KOG4469|consen  152 -LRVPLRVLVL-------------------TGLQD-VRFPQ------------------------DEAVAP---S-----  178 (391)
T ss_pred             -EeeceEEEEE-------------------ecccc-cccCc------------------------ccccCC---C-----
Confidence             9999999433                   22121 11100                        001111   0     


Q ss_pred             ccccccCCcccccccccccCCCCCCccccccccc----ccCCcccccccceeccCCCCCccCCcccccccccccccccCC
Q 008822          271 NLLKTFGSSLSLQSSTARSSTKDIPAFEGELMRL----SSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTK  346 (552)
Q Consensus       271 ~~~~~~g~~l~~~s~~~~~~~~~~p~~~~~r~~~----~~~~~~~~l~~a~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~  346 (552)
                                             .||+|-..-..    --+++=++|                     +.-+.     | 
T Consensus       179 -----------------------spfleedeggkkdswlaelagerl---------------------maats-----c-  208 (391)
T KOG4469|consen  179 -----------------------SPFLEEDEGGKKDSWLAELAGERL---------------------MAATS-----C-  208 (391)
T ss_pred             -----------------------CCccccccCCccchHHHHhhhhhh---------------------hhhcc-----c-
Confidence                                   23322110000    000111111                     00000     0 


Q ss_pred             CCCCCCCCCCCCCCccccccccccCCCcceEEEEeCCEEEEEEEccCCCcceecCCcEEEEEEecCCCCceeEEEEEEEE
Q 008822          347 PADDITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITL  426 (552)
Q Consensus       347 ~~~~~~g~~~~p~~~~l~pqls~g~~~~ksY~I~rng~~VarlsLs~pkpaYrLGEdI~GtlDF~~~~~~irC~qVSvsL  426 (552)
                                               +.-.-|+|+.+..+|+.|-+-  |+.|||||||.|++++  .++++.|+|++++|
T Consensus       209 -------------------------rslhlynisdgrgkvgtfgif--ksvyrlgedvvgtlnl--gegtvaclqfsvsl  259 (391)
T KOG4469|consen  209 -------------------------RSLHLYNISDGRGKVGTFGIF--KSVYRLGEDVVGTLNL--GEGTVACLQFSVSL  259 (391)
T ss_pred             -------------------------ceeeeEeecCCCccceeeehh--hhhhhcccceeeeeec--CCceEEEEEEEEee
Confidence                                     235679999999999999996  6899999999999999  57999999999999


Q ss_pred             EEeeeecCCccCCCCCC-CCcee-eEEEeeeeeecccceeeEEecCCCCCCCceEeCceeEEEEEEEEEEecCC------
Q 008822          427 ETSETINRWFVHPSRRN-SPTIT-KIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPK------  498 (552)
Q Consensus       427 ESeE~Inp~~~~~S~~s-~~~~r-kvhae~hE~cld~~~T~F~L~IP~~aTPqF~Td~VsLkW~LRFEFVts~~------  498 (552)
                      +++|.++|+|+.+.+.. .+... -.|+.|+|.|+++.++.|+|+||++.||.|+|.+|+|||+||||||++.+      
T Consensus       260 qteervqpeyqrrrgaggvpsvshvtharhqesclhttrtsfslpiplsstpgfctaivslkwrlhfefvtsrepglvll  339 (391)
T KOG4469|consen  260 QTEERVQPEYQRRRGAGGVPSVSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLL  339 (391)
T ss_pred             chhhhcChHHHhhccCCCCCcchhhhhhhhhhhhhhcccceeeeccccCCCCccEeeEeeeeeEEEEEEEecCCCCeEec
Confidence            99999999999876554 12222 24999999999999999999999999999999999999999999999854      


Q ss_pred             -------CccccccCCCCCcCCceEEEEEeeeEEeCCCCCCC
Q 008822          499 -------HVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAP  533 (552)
Q Consensus       499 -------~~~wqa~e~~~~l~e~EtF~W~LPItVlPt~P~~~  533 (552)
                             .+.|.++|+   + .+++|+|+|||+|+|++|.-+
T Consensus       340 ppveqpepttwtgpeq---v-pvdtfswdlpikvlptsptla  377 (391)
T KOG4469|consen  340 PPVEQPEPTTWTGPEQ---V-PVDTFSWDLPIKVLPTSPTLA  377 (391)
T ss_pred             CCcCCCCCccccCCcc---c-cccccccccceeeccCCcchh
Confidence                   688999999   8 899999999999999998643

>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=98.48  E-value=2.7e-07  Score=81.69  Aligned_cols=117  Identities=22%  Similarity=0.292  Sum_probs=68.5

Q ss_pred             eeeeecceeeeCCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEEEEeccCcceeecCCC-----CCCccccccEEE
Q 008822           42 LKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPL-----PGSKQRRGEFAF  116 (552)
Q Consensus        42 l~l~~dk~vY~PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g~ek~D~q~~~~~~pl-----~~skq~rge~if  116 (552)
                      +.|..++.+|.|||.|+-.|.++...         .+.++.|..+++|.+++...-...+..-     ....+......+
T Consensus         3 I~ld~~~~~y~~Ge~I~G~V~l~~~~---------~~~i~~i~v~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (149)
T PF00339_consen    3 IELDNPKPVYFPGEVISGKVVLELSK---------PIKIKSIKVRLKGRAKTKWSESKSSGSTFRKQTTPKVQYSEKKEY   73 (149)
T ss_dssp             EEES-SEEEEESS--EEEEEEECTTT----------TTTSEEEEEEEEEEEESSSSTTSTTCEEEEEEESTSSS-SSSSS
T ss_pred             EEECCCCCEECCCCEEEEEEEEEECC---------ccceeEEEEEEEEEEEEEecCCCcceeeeeeEEecccccccceee
Confidence            34444599999999999999996555         4778999999999999876622211100     001122233344


Q ss_pred             eccCcceeee---ccccCCCCeeEEEEEEecCCCCCCCCccceEEEEEEEEEEEe
Q 008822          117 LDISASKLIS---NQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLS  168 (552)
Q Consensus       117 ~~~~~~~Lvs---d~~l~~g~tk~y~vr~~LP~~lPPSyRG~~vRy~Y~i~at~~  168 (552)
                      .+...+++-.   ...|.+|. -.|-+.+.||..|||||+|..-+-.|+|+|++.
T Consensus        74 ~~~~~~l~~~~~~~~~l~~G~-~~fpF~f~LP~~lP~S~~~~~g~I~Y~l~a~l~  127 (149)
T PF00339_consen   74 FDHESQLWGSEDGPNILPPGE-YEFPFEFQLPSNLPSSFEGSHGSIRYKLKATLD  127 (149)
T ss_dssp             SHHHHHHHHH--------C-T-TEEEEEE---TTS--SEEEE-SEEEEEEEEEES
T ss_pred             ccceeEeeeeccceecccCCC-EEEEEEEECCCCCCceEeccCcCEEEEEEEEEE
Confidence            4333322222   48889994 789999999999999999998888999999994

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=98.38  E-value=4.5e-06  Score=72.42  Aligned_cols=122  Identities=22%  Similarity=0.341  Sum_probs=67.0

Q ss_pred             eeeeeecceeeeCCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEEEEeccCcceeecCCCCCC-ccccccEEEecc
Q 008822           41 TLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGS-KQRRGEFAFLDI  119 (552)
Q Consensus        41 ~l~l~~dk~vY~PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g~ek~D~q~~~~~~pl~~s-kq~rge~if~~~  119 (552)
                      .++++++|..|.|||.|.+.|+|.|.+         ..-++.+.+.+.-....-.+        .+. ..++...++...
T Consensus         6 ~~~~~i~~~~~~~Ge~i~v~v~i~n~s---------~~~i~~I~v~L~~~~~~~~~--------~~~~~~~~~~~~v~~~   68 (136)
T PF02752_consen    6 SLSISIPRTAYVPGETIPVNVEIDNQS---------KKKIKKIKVSLVERITYKAK--------GGKDESKSEKRVVAKS   68 (136)
T ss_dssp             EEEEEES-SEEETT--EEEEEEEEE-S---------SSEEEEEEEEEEEEEEE-SS------------S-EEEEEEEEEE
T ss_pred             EEEEEECCCEECCCCEEEEEEEEEECC---------CCEEEEEEEEEEEEEEEEEe--------eccccceEEEEEEEEE
Confidence            478999999999999999999999866         24566666665443322221        110 223333333321


Q ss_pred             CcceeeeccccCCCCeeEEE--EEEecCCCCCCCC--ccceEEEEEEEEEEEeeeeEEeccCcccccccccccccccccc
Q 008822          120 SASKLISNQIVSSDATKSYV--IRTELPSIIPPSY--RGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLP  195 (552)
Q Consensus       120 ~~~~Lvsd~~l~~g~tk~y~--vr~~LP~~lPPSy--RG~~vRy~Y~i~at~~g~~~~~~ng~~~~~s~~~~~~l~~RiP  195 (552)
                      ..    .  .+.++....|.  +.+.||..+|||.  .|..|+.-|+|+-+..-.              -....+.+++|
T Consensus        69 ~~----~--~~~~~~~~~~~~~~~l~lP~~~~~s~~~~~~~i~v~Y~l~v~~~~~--------------~~~~~~~~~~P  128 (136)
T PF02752_consen   69 KN----C--GVDPGSSGSFEFNIQLQLPSNLPPSTSTNSRLIQVEYQLEVTVKLS--------------GCTSDLRLELP  128 (136)
T ss_dssp             EC----C--EB-B-TTEEEEEEEEE-----B-----CGGGSEEEEEEEEEEEEEE--------------TTSEEEEEEEE
T ss_pred             ec----C--CccCCCCceEEEEEEEcCCCccCcccccCCcEEEEEEEEEEEEEEC--------------CceeEEEEEcc
Confidence            11    1  11566777777  9999999999998  999999999996665511              12334568999


Q ss_pred             eEEE
Q 008822          196 LQIW  199 (552)
Q Consensus       196 i~V~  199 (552)
                      |.|.
T Consensus       129 I~I~  132 (136)
T PF02752_consen  129 ITIG  132 (136)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9993

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>KOG3780 consensus Thioredoxin binding protein TBP-2/VDUP1 [General function prediction only]

Probab=98.11  E-value=0.0022  Score=67.47  Aligned_cols=133  Identities=18%  Similarity=0.168  Sum_probs=85.4

Q ss_pred             ceEEEEeCCEEEEEEEccCCCcceecCCcEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccC---CCCCCCCceeeEE
Q 008822          375 RSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVH---PSRRNSPTITKIQ  451 (552)
Q Consensus       375 ksY~I~rng~~VarlsLs~pkpaYrLGEdI~GtlDF~~~~~~irC~qVSvsLESeE~Inp~~~~---~S~~s~~~~rkvh  451 (552)
                      ..+..-.+|..+..+.+.  +.+|..||.|...+++.+. ....+..+.+.|-..+.....-..   ..........+ +
T Consensus       178 ~~~~~~~~g~v~~~~~ip--~~~~~~ge~i~~~~~i~n~-ss~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~~~~~-~  253 (427)
T KOG3780|consen  178 LGCVCFSSGPVSLELTIP--KTGYVPGETIPVTLEIENK-SSRTIKKVKAKLIQKISYLAFSYGEHTKTKKSEKTLIK-S  253 (427)
T ss_pred             eeEEEecCCcEEEEEEcc--cccCcCCccEEEEEEEecC-CCCcceeeEEEEEEEEEEEeecCCccccceeeeeEEee-e
Confidence            344577788888889994  7899999999999999753 677777777777776665432210   01000111111 2


Q ss_pred             Eeeeeeeccccee-eEEecCCCCCCCceE--eCceeEEEEEEEEEEecCCCccccccCCCCCcCCceEEEEEeeeEEe
Q 008822          452 SDHHEVVADLVQT-SFLFSIPMDGPMSFS--TPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVH  526 (552)
Q Consensus       452 ae~hE~cld~~~T-~F~L~IP~~aTPqF~--Td~VsLkW~LRFEFVts~~~~~wqa~e~~~~l~e~EtF~W~LPItVl  526 (552)
                      .....+....... ...|.||... |+|.  +.++++.-.|++.+.+...   +           .....+.+||.|.
T Consensus       254 ~~~~~v~~~~~~~~~~~~~iP~~~-Ps~~~~~~~i~v~y~l~v~~~~~~~---~-----------~~~~~l~~pi~ig  316 (427)
T KOG3780|consen  254 RGSLEVAPRSEDKFEKELRIPPVP-PSILPDTPIIRVEYELKVTLKTSSL---R-----------HSELALELPIIIG  316 (427)
T ss_pred             ccccccCCCCccccceEEEcCCCC-CccCCCCceEEEEEEEEEEEecCcc---c-----------ccceeeeeceEEe
Confidence            2333344433333 5666689888 4666  6999999999999998652   1           2234566788887

>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=97.81  E-value=0.0012  Score=57.38  Aligned_cols=127  Identities=13%  Similarity=0.171  Sum_probs=77.2

Q ss_pred             CCEEEEEEEccCCCcceecCCcEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCCCCceeeEEEeeeeeec--
Q 008822          382 DDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVA--  459 (552)
Q Consensus       382 ng~~VarlsLs~pkpaYrLGEdI~GtlDF~~~~~~irC~qVSvsLESeE~Inp~~~~~S~~s~~~~rkvhae~hE~cl--  459 (552)
                      +|..-+.+.+.  |.+|..||+|...+++. +....++.++.++|.-.-.+...-...   ......++.++++..-.  
T Consensus         2 ~g~i~~~~~i~--~~~~~~Ge~i~v~v~i~-n~s~~~i~~I~v~L~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~   75 (136)
T PF02752_consen    2 SGKISLSISIP--RTAYVPGETIPVNVEID-NQSKKKIKKIKVSLVERITYKAKGGKD---ESKSEKRVVAKSKNCGVDP   75 (136)
T ss_dssp             TEEEEEEEEES---SEEETT--EEEEEEEE-E-SSSEEEEEEEEEEEEEEE-SS-------S-EEEEEEEEEEECCEB-B
T ss_pred             CCEEEEEEEEC--CCEECCCCEEEEEEEEE-ECCCCEEEEEEEEEEEEEEEEEeeccc---cceEEEEEEEEEecCCccC
Confidence            56666777774  78999999999999998 468899999999997766654432111   12334445555333222  


Q ss_pred             -cccee--eEEecCCCCCCCce--EeCceeEEEEEEEEEEecCCCccccccCCCCCcCCceEEEEEeeeEEeCCC
Q 008822          460 -DLVQT--SFLFSIPMDGPMSF--STPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPP  529 (552)
Q Consensus       460 -d~~~T--~F~L~IP~~aTPqF--~Td~VsLkW~LRFEFVts~~~~~wqa~e~~~~l~e~EtF~W~LPItVlPt~  529 (552)
                       ....-  .+.|.+|.+.+|++  ..++++++..|++++.+..               ....+.+.+||+|...+
T Consensus        76 ~~~~~~~~~~~l~lP~~~~~s~~~~~~~i~v~Y~l~v~~~~~~---------------~~~~~~~~~PI~I~~~p  135 (136)
T PF02752_consen   76 GSSGSFEFNIQLQLPSNLPPSTSTNSRLIQVEYQLEVTVKLSG---------------CTSDLRLELPITIGSSP  135 (136)
T ss_dssp             -TTEEEEEEEEE-----B-----CGGGSEEEEEEEEEEEEEET---------------TSEEEEEEEEEEEEB-S
T ss_pred             CCCceEEEEEEEcCCCccCcccccCCcEEEEEEEEEEEEEECC---------------ceeEEEEEccEEEEecC
Confidence             12212  37899999999988  6789999999999999862               25678899999998554

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=96.32  E-value=0.0046  Score=54.74  Aligned_cols=105  Identities=13%  Similarity=0.209  Sum_probs=60.6

Q ss_pred             EEEccCCCcceecCCcEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCC-------------CCcee----eE
Q 008822          388 RFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRN-------------SPTIT----KI  450 (552)
Q Consensus       388 rlsLs~pkpaYrLGEdI~GtlDF~~~~~~irC~qVSvsLESeE~Inp~~~~~S~~s-------------~~~~r----kv  450 (552)
                      .+.|.++++.|..||.|.|.+.+.. ...+++-.+.+.|.-.+.+.-.........             ....-    .+
T Consensus         2 ~I~ld~~~~~y~~Ge~I~G~V~l~~-~~~~~i~~i~v~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (149)
T PF00339_consen    2 EIELDNPKPVYFPGEVISGKVVLEL-SKPIKIKSIKVRLKGRAKTKWSESKSSGSTFRKQTTPKVQYSEKKEYFDHESQL   80 (149)
T ss_dssp             EEEES-SEEEEESS--EEEEEEECT-TT-TTTSEEEEEEEEEEEESSSSTTSTTCEEEEEEESTSSS-SSSSSSHHHHHH
T ss_pred             EEEECCCCCEECCCCEEEEEEEEEE-CCccceeEEEEEEEEEEEEEecCCCcceeeeeeEEecccccccceeeccceeEe
Confidence            4667667899999999999999963 567888889999999998753322111100             00000    00


Q ss_pred             EEe-eeeee--cccceeeEEecCCCCCCCceEeCceeEEEEEEEEE
Q 008822          451 QSD-HHEVV--ADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEF  493 (552)
Q Consensus       451 hae-~hE~c--ld~~~T~F~L~IP~~aTPqF~Td~VsLkW~LRFEF  493 (552)
                      +.. ....+  .....-+|.+.+|.+.+++|.....+++|.|+-..
T Consensus        81 ~~~~~~~~~l~~G~~~fpF~f~LP~~lP~S~~~~~g~I~Y~l~a~l  126 (149)
T PF00339_consen   81 WGSEDGPNILPPGEYEFPFEFQLPSNLPSSFEGSHGSIRYKLKATL  126 (149)
T ss_dssp             HHH--------C-TTEEEEEE---TTS--SEEEE-SEEEEEEEEEE
T ss_pred             eeeccceecccCCCEEEEEEEECCCCCCceEeccCcCEEEEEEEEE
Confidence            000 00122  23344599999999999999998889999998886

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis

Probab=95.94  E-value=0.059  Score=54.10  Aligned_cols=97  Identities=16%  Similarity=0.171  Sum_probs=70.3

Q ss_pred             CeeeeeecceeeeCCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEEEEeccCcceeecCCCCCCccccccEEEecc
Q 008822           40 PTLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDI  119 (552)
Q Consensus        40 ~~l~l~~dk~vY~PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g~ek~D~q~~~~~~pl~~skq~rge~if~~~  119 (552)
                      ++++..|++.-|+|||.|+-+|.|..-.-        ...|+.|...+..-=+.          ..+.+..+.++.|..-
T Consensus        13 akVDT~L~~~~~~pGe~v~G~V~i~GG~v--------~Q~I~~I~l~L~t~~~~----------e~~d~~~~~~~~~~~~   74 (218)
T PF07070_consen   13 AKVDTVLEKPSVRPGETVRGEVHIKGGSV--------DQEIDRIYLELVTRYEV----------ESDDKEYTQEVELARV   74 (218)
T ss_pred             ceEEEEECCCCccCCCEEEEEEEEEeCCc--------ceEEeEEEEEEEEEEEE----------ecCCCeEEEEEEEEEE
Confidence            58999999999999999999999987651        35677777775542111          1122233455555432


Q ss_pred             CcceeeeccccCCCCeeEEEEEEecCCCCCCCCccceE
Q 008822          120 SASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTI  157 (552)
Q Consensus       120 ~~~~Lvsd~~l~~g~tk~y~vr~~LP~~lPPSyRG~~v  157 (552)
                      .   +.....|.||+.|.+=+.+.||-.+|-|-.|..+
T Consensus        75 ~---v~~~f~I~~ge~~~iPF~~~lP~etPiT~~~~~v  109 (218)
T PF07070_consen   75 R---VSGPFTIEPGEEKEIPFSFPLPWETPITEGGMRV  109 (218)
T ss_pred             E---eCCCEEECCCCEEEEeEEEECCCCCCccCCCcEE
Confidence            2   4556788999999999999999999999976653

Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=92.69  E-value=0.61  Score=39.68  Aligned_cols=26  Identities=31%  Similarity=0.533  Sum_probs=21.4

Q ss_pred             eeeeecceeeeCCCeEEEEEEEecCC
Q 008822           42 LKLQTDKNVYTPGDTVFVTVEICNPL   67 (552)
Q Consensus        42 l~l~~dk~vY~PGd~V~~~Iei~~~~   67 (552)
                      +-+++||.+|||||.|.+.+-+-+..
T Consensus         2 ~~i~TDr~iYrPGetV~~~~~~~~~~   27 (99)
T PF01835_consen    2 IFIQTDRPIYRPGETVHFRAIVRDLD   27 (99)
T ss_dssp             EEEEESSSEE-TTSEEEEEEEEEEEC
T ss_pred             EEEECCccCcCCCCEEEEEEEEeccc
Confidence            45899999999999999998876665

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>KOG3780 consensus Thioredoxin binding protein TBP-2/VDUP1 [General function prediction only]

Probab=88.82  E-value=3.3  Score=43.86  Aligned_cols=111  Identities=23%  Similarity=0.246  Sum_probs=68.9

Q ss_pred             CCCeeeeeecceeeeCCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEEEEeccCcceeecCCCCCCccccccEEEe
Q 008822           38 VLPTLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFL  117 (552)
Q Consensus        38 ~~~~l~l~~dk~vY~PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g~ek~D~q~~~~~~pl~~skq~rge~if~  117 (552)
                      ..-.+++++.+..|.|||.|...++|-|-.         +--+..+..+++=.+..-..     ..-..-+.+..++.-.
T Consensus       186 g~v~~~~~ip~~~~~~ge~i~~~~~i~n~s---------s~~~~~~~~~l~q~~~~~~~-----~~~~~~~~~~~~~~~~  251 (427)
T KOG3780|consen  186 GPVSLELTIPKTGYVPGETIPVTLEIENKS---------SRTIKKVKAKLIQKISYLAF-----SYGEHTKTKKSEKTLI  251 (427)
T ss_pred             CcEEEEEEcccccCcCCccEEEEEEEecCC---------CCcceeeEEEEEEEEEEEee-----cCCccccceeeeeEEe
Confidence            445789999999999999999999999983         12233333332221111000     0000011122222211


Q ss_pred             ccCcceeeeccccCCCCeeEEEEEEecCCCCCCCCc--cceEEEEEEEEEEEe
Q 008822          118 DISASKLISNQIVSSDATKSYVIRTELPSIIPPSYR--GTTIRYLYYVKSTLS  168 (552)
Q Consensus       118 ~~~~~~Lvsd~~l~~g~tk~y~vr~~LP~~lPPSyR--G~~vRy~Y~i~at~~  168 (552)
                      -     ..-+..+.++....|...+++|..+| ++.  ...|+.-|-|+..+.
T Consensus       252 ~-----~~~~~~v~~~~~~~~~~~~~iP~~~P-s~~~~~~~i~v~y~l~v~~~  298 (427)
T KOG3780|consen  252 K-----SRGSLEVAPRSEDKFEKELRIPPVPP-SILPDTPIIRVEYELKVTLK  298 (427)
T ss_pred             e-----eccccccCCCCccccceEEEcCCCCC-ccCCCCceEEEEEEEEEEEe
Confidence            1     22234458899999999999999996 888  488888888877765

>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor []

Probab=84.82  E-value=6.1  Score=43.13  Aligned_cols=103  Identities=10%  Similarity=0.216  Sum_probs=68.6

Q ss_pred             eeeeeecceeeeCCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEEEEeccCcceeecCCCCCCccccccEEEeccC
Q 008822           41 TLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDIS  120 (552)
Q Consensus        41 ~l~l~~dk~vY~PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g~ek~D~q~~~~~~pl~~skq~rge~if~~~~  120 (552)
                      -.++.+.|..|+-||.|..+|+|.+.. .        .-+-.++..+-..|++++.+-. +.  .++.++--+.+..+..
T Consensus       305 va~~~LsK~~yrlGE~I~g~idf~~~~-~--------~~c~~v~~~LEs~E~v~~~~~~-~~--~~~~~~~~~~~~~~~~  372 (415)
T PF08737_consen  305 VARLSLSKPAYRLGEDIVGTIDFNDAS-T--------IPCYQVSASLESEETVNPSYAV-RS--SAKINRVTRKVHAEHH  372 (415)
T ss_pred             EEEEEecCCCcccCCeEEEEEEcCCCC-c--------ceeEEEEEEEEEEEEeCchhcc-cc--cccccccEEEEEEEEe
Confidence            357888999999999999999998776 1        3344566677888888888511 10  1121222233333332


Q ss_pred             cceeeeccccCCCCeeEEEEEEecCCCCCCCCccceEEEEEEE
Q 008822          121 ASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYV  163 (552)
Q Consensus       121 ~~~Lvsd~~l~~g~tk~y~vr~~LP~~lPPSyRG~~vRy~Y~i  163 (552)
                      .        +..+....-.+.+.+|...+|+|+=..|..=|+|
T Consensus       373 e--------~~~~~~~~~~f~l~IP~~~tp~F~T~~v~lkW~L  407 (415)
T PF08737_consen  373 E--------ICLDSRSRTSFSLPIPLSATPQFQTSGVSLKWRL  407 (415)
T ss_pred             e--------eecCCcceEEEEeeCCCCCCCceEeCCEEEEEEE
Confidence            2        1122222557889999999999998888877776

>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules

Probab=83.41  E-value=5.7  Score=41.37  Aligned_cols=97  Identities=16%  Similarity=0.222  Sum_probs=55.6

Q ss_pred             EEEccCCCcceecCCcEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCCCCceeeEEEeeeeeecccc----e
Q 008822          388 RFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLV----Q  463 (552)
Q Consensus       388 rlsLs~pkpaYrLGEdI~GtlDF~~~~~~irC~qVSvsLESeE~Inp~~~~~S~~s~~~~rkvhae~hE~cld~~----~  463 (552)
                      .+.+.  |+.|.|.|.|.|.+.|-  -..++...+-+.|-.-|++-.      ..+...-.+ --...|+.-...    .
T Consensus       169 ef~~~--k~~~~l~d~i~G~i~f~--lv~~kIk~~elqLiR~Et~g~------~~~~~~e~t-~i~~~eImDG~p~rge~  237 (275)
T PF03643_consen  169 EFEYD--KSKYHLKDVITGKIYFL--LVRIKIKSMELQLIRVETCGC------GENYAKEST-EIQKIEIMDGAPCRGES  237 (275)
T ss_dssp             EEEES---SEEETT-EEEEEEEEE--EESS-EEEEEEEEEEEEEECE------CCCEEEEEE-EEEEEEEESS---TT-E
T ss_pred             EEEEc--ccceECCCCEEEEEEEE--EEeecceEEEEEEEEEEEEec------CCcccccce-EEEEEEeecCCccccce
Confidence            44454  67899999999999995  356888888888888888732      011000011 112233333222    2


Q ss_pred             eeEEecCC-CCCCCceEe--CceeEEEEEEEEEEe
Q 008822          464 TSFLFSIP-MDGPMSFST--PYVSVQWALRFEFLT  495 (552)
Q Consensus       464 T~F~L~IP-~~aTPqF~T--d~VsLkW~LRFEFVt  495 (552)
                      -+|.|-+| +..||++.|  +.|+++..|++-.|.
T Consensus       238 IPirl~l~~l~l~Pt~~~~~~~FsV~y~lnlvlid  272 (275)
T PF03643_consen  238 IPIRLFLPRLFLCPTYKNVNNKFSVEYELNLVLID  272 (275)
T ss_dssp             EEEEEECCCT-----EEEECTTEEEEEEEEEEEEE
T ss_pred             eeEEEEcCCcccCCcchhcCCcEEEEEEEEEEEEc
Confidence            26655554 567999995  679999999987765

Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.

>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis

Probab=80.33  E-value=10  Score=38.35  Aligned_cols=100  Identities=11%  Similarity=0.121  Sum_probs=60.6

Q ss_pred             CcceecCCcEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCC-CCCceee-EEEeeeeeeccccee-eEEecCC
Q 008822          395 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRR-NSPTITK-IQSDHHEVVADLVQT-SFLFSIP  471 (552)
Q Consensus       395 kpaYrLGEdI~GtlDF~~~~~~irC~qVSvsLESeE~Inp~~~~~S~~-s~~~~rk-vhae~hE~cld~~~T-~F~L~IP  471 (552)
                      ++.|+.||+|.|++.+...+..-++-++.+.|.+.=.....   +... ....+-+ ..++-..+=.+..+. +|.++||
T Consensus        21 ~~~~~pGe~v~G~V~i~GG~v~Q~I~~I~l~L~t~~~~e~~---d~~~~~~~~~~~~~v~~~f~I~~ge~~~iPF~~~lP   97 (218)
T PF07070_consen   21 KPSVRPGETVRGEVHIKGGSVDQEIDRIYLELVTRYEVESD---DKEYTQEVELARVRVSGPFTIEPGEEKEIPFSFPLP   97 (218)
T ss_pred             CCCccCCCEEEEEEEEEeCCcceEEeEEEEEEEEEEEEecC---CCeEEEEEEEEEEEeCCCEEECCCCEEEEeEEEECC
Confidence            57999999999999997545566777888888775333211   0000 0011111 011222222333333 9999999


Q ss_pred             CCCCCceEeCceeEEEEEEEEEEecC
Q 008822          472 MDGPMSFSTPYVSVQWALRFEFLTTP  497 (552)
Q Consensus       472 ~~aTPqF~Td~VsLkW~LRFEFVts~  497 (552)
                      .+.+-+-....|.|+=.|.++.-+-+
T Consensus        98 ~etPiT~~~~~v~l~T~LdI~~avD~  123 (218)
T PF07070_consen   98 WETPITEGGMRVWLRTGLDIAGAVDP  123 (218)
T ss_pred             CCCCccCCCcEEEEEEEEEeCCCCCC
Confidence            99888776666777777766655543

Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	552
2r51_A	340	Vacuolar protein sorting-associated protein 26B; r	98.63
2fau_A	341	Vacuolar protein sorting 26; arrestin, retromer, p	98.51
1g4m_A	393	Beta-arrestin1; sensory transduction, alternative	96.19
1suj_A	392	CONE arrestin; sensory transduction, signaling pro	96.09
1suj_A	392	CONE arrestin; sensory transduction, signaling pro	93.57
2r51_A	340	Vacuolar protein sorting-associated protein 26B; r	91.28
2p9r_A	102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	90.15
3isy_A	120	Bsupi, intracellular proteinase inhibitor; intrace	88.41
3ugu_A	380	S-arrestin; arrestin fold, signal termination, GPC	86.16
1g4m_A	393	Beta-arrestin1; sensory transduction, alternative	83.85
2fau_A	341	Vacuolar protein sorting 26; arrestin, retromer, p	80.56

>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A

Probab=98.63  E-value=2.2e-05  Score=81.14  Aligned_cols=98  Identities=17%  Similarity=0.272  Sum_probs=71.1

Q ss_pred             eeeeCCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEEEEeccCcceeecCCCCCCccccccEEEeccCcceeeecc
Q 008822           49 NVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDISASKLISNQ  128 (552)
Q Consensus        49 ~vY~PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g~ek~D~q~~~~~~pl~~skq~rge~if~~~~~~~Lvsd~  128 (552)
                      -+|.|||.|.=.|.|...-..+      .+-...+.+++.|...+  .|-           +-.+.-|..... -|+..-
T Consensus        42 pvY~~GE~VsG~V~I~~~~~~k------~l~h~GIki~~~G~~e~--~~~-----------~~~~~~f~~~~~-eL~~pG  101 (340)
T 2r51_A           42 FLFYDGETVSGKVSLSLKNPNK------RLEHQGIKIEFIGQIEL--YYD-----------RGNHHEFVSLVK-DLARPG  101 (340)
T ss_dssp             EEEETBCCEEEEEEEEESSTTS------CEEESCEEEEEEEEEEE--GGG-----------TTCCEEEEEEEE-EEECSE
T ss_pred             CcCCCCCEEEEEEEEEECCCCC------eeEEEEEEEEEEEEEEE--Eec-----------CCCcEEEEEEEE-EecCCC
Confidence            4899999999998888771011      35667888888886554  331           112333433333 244444


Q ss_pred             ccCCCCeeEEEEEEecCCCCCCCCccceEEEEEEEEEEEe
Q 008822          129 IVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLS  168 (552)
Q Consensus       129 ~l~~g~tk~y~vr~~LP~~lPPSyRG~~vRy~Y~i~at~~  168 (552)
                      .|.+|.+  |-+.|.||..+|+||.|..++.-|+|++++.
T Consensus       102 ~L~~G~~--fpF~F~lp~~l~eSy~G~~g~IrY~vkv~i~  139 (340)
T 2r51_A          102 EITQSQA--FDFEFTHVEKPYESYTGQNVKLRYFLRATIS  139 (340)
T ss_dssp             EECSCEE--EEEEECSBCCCSCCEECSSEEEEEEEEEEEC
T ss_pred             ccCCCcE--EeeEeCCCCCCCcCeEeeeEEEEEEEEEEEE
Confidence            6788865  9999999999999999999999999999996

>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}

Probab=98.51  E-value=4.7e-05  Score=78.72  Aligned_cols=98  Identities=18%  Similarity=0.254  Sum_probs=71.2

Q ss_pred             eeeeCCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEEEEeccCcceeecCCCCCCccccccEEEeccCcceeeecc
Q 008822           49 NVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDISASKLISNQ  128 (552)
Q Consensus        49 ~vY~PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g~ek~D~q~~~~~~pl~~skq~rge~if~~~~~~~Lvsd~  128 (552)
                      .+|.|||.|.-.|.|.......      .+-...+..+++|...+-  |          .+. ..+-|..... -|+..-
T Consensus        42 ~vY~~GE~VsG~V~I~~~~~gk------~l~h~GIki~~~G~~e~~--~----------~~~-~~~~fls~~~-eL~~~G  101 (341)
T 2fau_A           42 YLFYDGESVSGKVNLAFKQPGK------RLEHQGIRIEFVGQIELF--N----------DKS-NTHEFVNLVK-ELALPG  101 (341)
T ss_dssp             EEECTTCCEEEEEEEEESSSSC------CEEESCEEEEEEEEEEEC--S----------TTC-CEEEEEEEEE-EEECSE
T ss_pred             CcCCCCCEEEEEEEEEECCCCC------eeeEEEEEEEEEEEEEEE--e----------cCC-CcEEEEEEEE-EEcCCC
Confidence            5999999999998888763111      255577888888876652  2          011 2233333333 355445


Q ss_pred             ccCCCCeeEEEEEEecCCCCCCCCccceEEEEEEEEEEEe
Q 008822          129 IVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLS  168 (552)
Q Consensus       129 ~l~~g~tk~y~vr~~LP~~lPPSyRG~~vRy~Y~i~at~~  168 (552)
                      .|.+|  +.|-+.|.+|..+|+||.|..++.-|+|++++.
T Consensus       102 ~L~~g--~~fpF~F~~~~~~~eSy~G~~~~IrY~vrv~i~  139 (341)
T 2fau_A          102 ELTQS--RSYDFEFMQVEKPYESYIGANVRLRYFLKVTIV  139 (341)
T ss_dssp             EECSC--EEEEEEECSCCCCSCCEECSSEEEEEEEEEEEC
T ss_pred             ccCCC--cEEeeEeCCCCCCCcceEeeEEEEEEEEEEEEE
Confidence            67888  889999999888999999999999999999996

>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A

Probab=96.19  E-value=0.03  Score=58.66  Aligned_cols=40  Identities=20%  Similarity=0.432  Sum_probs=32.0

Q ss_pred             eeeeeecceeeeCCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEE
Q 008822           41 TLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKG   89 (552)
Q Consensus        41 ~l~l~~dk~vY~PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g   89 (552)
                      .|++++||..|.|||.|.+.|+|.|.++         .-++.+...+.-
T Consensus       198 ~l~~sldk~~Y~pGE~I~v~v~I~N~S~---------k~Vk~Ikv~L~Q  237 (393)
T 1g4m_A          198 HLEASLDKEIYYHGEPISVNVHVTNNTN---------KTVKKIKISVRQ  237 (393)
T ss_dssp             EEEEEESCSEEETTCCEEEEEEEEECSS---------CCEEEEEEEEEE
T ss_pred             EEEEEECCceEcCCCEEEEEEEEEcCCC---------CEEeEEEEEEEE
Confidence            5889999999999999999999999982         335555555443

>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}

Probab=96.09  E-value=0.018  Score=60.55  Aligned_cols=27  Identities=33%  Similarity=0.519  Sum_probs=25.6

Q ss_pred             eeeeeecceeeeCCCeEEEEEEEecCC
Q 008822           41 TLKLQTDKNVYTPGDTVFVTVEICNPL   67 (552)
Q Consensus        41 ~l~l~~dk~vY~PGd~V~~~Iei~~~~   67 (552)
                      .|++++||..|.|||.|.+.|+|.|.+
T Consensus       195 ~l~vsLdK~~Y~pGE~I~V~v~I~N~S  221 (392)
T 1suj_A          195 HLEASLDKEIYYHGEPINVNVKINNTT  221 (392)
T ss_dssp             EEEEEESCSEEETTCCEEEEEEEEECS
T ss_pred             EEEEEeCCccccCCCEEEEEEEEECCC
Confidence            478999999999999999999999998

>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}

Probab=93.57  E-value=8.5  Score=40.53  Aligned_cols=135  Identities=16%  Similarity=0.239  Sum_probs=80.0

Q ss_pred             EeCCEEEEEEEccCCCcceecCCcEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCCCCceeeEEEee--eee
Q 008822          380 RMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDH--HEV  457 (552)
Q Consensus       380 ~rng~~VarlsLs~pkpaYrLGEdI~GtlDF~~~~~~irC~qVSvsLESeE~Inp~~~~~S~~s~~~~rkvhae~--hE~  457 (552)
                      -..|..-.+++|.  |..|..||+|...++.++ ++...+-.+.+.|.-.=.+-- |.      ....+++.++.  -|-
T Consensus       189 ~ssGpl~l~vsLd--K~~Y~pGE~I~V~v~I~N-~Ssk~Vk~Ikv~L~Q~~~v~l-~s------~~~~k~~Va~~e~~e~  258 (392)
T 1suj_A          189 LSDRPLHLEASLD--KEIYYHGEPINVNVKINN-TTGKIVKKIKIIVEQVTDVVL-FS------LDKYVKTVCAEETNDT  258 (392)
T ss_dssp             ETTEEEEEEEEES--CSEEETTCCEEEEEEEEE-CSSSEEEEEEEEEEEEEEECS-SS------CCEEEEEEEEEECCCC
T ss_pred             ecCCCEEEEEEeC--CccccCCCEEEEEEEEEC-CCCCcEeEEEEEEEEEEEEEE-ec------CCcEEEEEEEEecCCC
Confidence            3467777888884  789999999999999985 566677778887776555420 10      01123333322  111


Q ss_pred             ec-ccc-eeeEEecCCCCC-----------------CCce-EeCc-----------eeEEEEEEEEEEecCCCccccccC
Q 008822          458 VA-DLV-QTSFLFSIPMDG-----------------PMSF-STPY-----------VSVQWALRFEFLTTPKHVQWTRYE  506 (552)
Q Consensus       458 cl-d~~-~T~F~L~IP~~a-----------------TPqF-~Td~-----------VsLkW~LRFEFVts~~~~~wqa~e  506 (552)
                      +. +.. +..|.|. |+-+                 ...+ .+.+           +.+..+|+.+.+++-.+    ...
T Consensus       259 V~pgst~~k~~~L~-P~l~~n~~k~glaldg~lk~~dTnLassti~~~~~~~~~~gI~VsY~vkVkl~v~~gg----~~~  333 (392)
T 1suj_A          259 VAANSTLSKTFSVT-PMLANNREKRGLALDGKLKHEDTNLASTTVIRPGMDKEVLGILVSYKVKVHLVVARGG----ILG  333 (392)
T ss_dssp             BCTTEEEEEEEEEC-CCGGGCSCCTTCCBSSCTTBSSCCBCCCCCCCTTSCGGGGSEEEEEEEEEEEEEETTS----STT
T ss_pred             cCCCCEEEEEEEEe-ccccCCCccceeeecccccCCCccccccccccCCCCccccceEEEEEEEEEEEEcCCc----ccc
Confidence            11 111 1244442 3332                 1112 1122           79999999999996411    111


Q ss_pred             CCCCcCCceEEEEEeeeEEeCCCCCCC
Q 008822          507 HPLLIEGRDKSEWVLPITVHAPPSGAP  533 (552)
Q Consensus       507 ~~~~l~e~EtF~W~LPItVlPt~P~~~  533 (552)
                      +   + -.......|||++..+.|...
T Consensus       334 ~---~-~s~d~~velPf~L~~p~P~~~  356 (392)
T 1suj_A          334 D---L-TSSDVAVELPLTLMHPKPSDD  356 (392)
T ss_dssp             C---C-CCEEEEEEEEEEEECCCCCCC
T ss_pred             c---c-cccCeeEEECeEEeCCCCCCc
Confidence            1   2 235778999999998888764

>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A

Probab=91.28  E-value=1.9  Score=44.56  Aligned_cols=100  Identities=15%  Similarity=0.182  Sum_probs=59.7

Q ss_pred             eeeeeecceeeeCCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEEEEeccCcceeecCCCCCCccccccEEEeccC
Q 008822           41 TLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDIS  120 (552)
Q Consensus        41 ~l~l~~dk~vY~PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g~ek~D~q~~~~~~pl~~skq~rge~if~~~~  120 (552)
                      .+..+++|..|.+||+|...|.|.+..          .-++.+..+|.-.|...       ++.         ....+..
T Consensus       177 ~Ie~~~~ks~y~lgd~I~G~I~f~~s~----------i~Ik~iel~LiR~Et~~-------~~~---------~~~~e~~  230 (340)
T 2r51_A          177 HIEFEYNKSKYHLKDVIVGKIYFLLVR----------IKIKHMEIDIIKRETTG-------TGP---------NVYHEND  230 (340)
T ss_dssp             EEEEEESCSEEETTCEEEEEEEEEEEC----------SCEEEEEEEEEEEEEEE-------ETT---------EEEEEEE
T ss_pred             EEEEEECcccccCCCeEEEEEEEEEee----------ceeEEEEEEEEEEEEEe-------cCC---------CeeEEEE
Confidence            567788999999999999888876332          34555666654444331       111         1111111


Q ss_pred             c--ceeeeccccCCCCeeEEEEEEecCC-CCCCCCc--cceEEEEEEEEEEEe
Q 008822          121 A--SKLISNQIVSSDATKSYVIRTELPS-IIPPSYR--GTTIRYLYYVKSTLS  168 (552)
Q Consensus       121 ~--~~Lvsd~~l~~g~tk~y~vr~~LP~-~lPPSyR--G~~vRy~Y~i~at~~  168 (552)
                      +  -+=+.|--...|+  +.-+|+.||. .|+|||+  -..++--|+|.-++.
T Consensus       231 ~i~k~eImdG~p~rge--~IPirl~Lp~~~l~PT~~~~~~~fsV~Y~Lnlvl~  281 (340)
T 2r51_A          231 TIAKYEIMDGAPVRGE--SIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLI  281 (340)
T ss_dssp             EEEEEEEEESCCCTTC--EEEEEEEGGGSCCCCCEEEETTTEEEEEEEEEEEE
T ss_pred             EEEEEEEecCCccCCC--EEEEEEECCCCCCCCCccccCCeEEEEEEEEEEEE
Confidence            1  0111122224455  4445899996 6999999  777888888855554

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}

Probab=90.15  E-value=0.19  Score=41.94  Aligned_cols=26  Identities=38%  Similarity=0.552  Sum_probs=21.8

Q ss_pred             CeeeeeecceeeeCCCeEEEEEEEec
Q 008822           40 PTLKLQTDKNVYTPGDTVFVTVEICN   65 (552)
Q Consensus        40 ~~l~l~~dk~vY~PGd~V~~~Iei~~   65 (552)
                      +.+-+++||.+|||||.|.+.+=+-+
T Consensus         2 ~~~fi~tDr~iYrPGetV~~~~~~~~   27 (102)
T 2p9r_A            2 SLVFVQTDKSIYKPGQTVKFRVVSMD   27 (102)
T ss_dssp             CEEEEEESCSEECTTCEEEEEEEEEC
T ss_pred             ceEEEECCCcccCCCCEEEEEEEEEC
Confidence            46789999999999999998876543

>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}

Probab=88.41  E-value=1.6  Score=38.99  Aligned_cols=87  Identities=15%  Similarity=0.148  Sum_probs=57.0

Q ss_pred             CCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEEEEeccCcceeecCCCCCCccccccEEE--e--ccCcceeeecc
Q 008822           53 PGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAF--L--DISASKLISNQ  128 (552)
Q Consensus        53 PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g~ek~D~q~~~~~~pl~~skq~rge~if--~--~~~~~~Lvsd~  128 (552)
                      +||.|.+++.++|+....-.    -..-.+.-|++.-                  ++.-|+.|+  +  .++++ -+.+.
T Consensus        16 ~g~~v~~~ltv~N~s~~~v~----l~f~Sgq~~Df~v------------------~d~~G~~VwrwS~~~~FtQ-a~~~~   72 (120)
T 3isy_A           16 EPEQIKFNMSLKNQSERAIE----FQFSTGQKFELVV------------------YDSEHKERYRYSKEKMFTQ-AFQNL   72 (120)
T ss_dssp             CSSCEEEEEEEEECSSSCEE----EEESSSCCEEEEE------------------ECTTCCEEEETTTTCCCCC-CCEEE
T ss_pred             CCCeEEEEEEEEcCCCCcEE----EEeCCCCEEEEEE------------------ECCCCCEEEEccccchhhh-hhceE
Confidence            99999999999999943210    0001122222222                  123467788  4  78887 67799


Q ss_pred             ccCCCCeeEEEEEEecCCCCCCCCccceEEEEEEEEEEEeeeeE
Q 008822          129 IVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWL  172 (552)
Q Consensus       129 ~l~~g~tk~y~vr~~LP~~lPPSyRG~~vRy~Y~i~at~~g~~~  172 (552)
                      .|.||++++|.  +++|..++|   |     -|.|++++.|+..
T Consensus        73 tl~pGE~~~f~--~~w~~~~~p---G-----~Ytl~a~l~~~~~  106 (120)
T 3isy_A           73 TLESGETYDFS--DVWKEVPEP---G-----TYEVKVTFKGRAE  106 (120)
T ss_dssp             EECTTCEEEEE--EEESSCCCS---E-----EEEEEEEECCEET
T ss_pred             EECCCCEEEEE--EEeCCCCCC---c-----cEEEEEEEEeeec
Confidence            99999998876  556655555   3     4888999998743

>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A

Probab=86.16  E-value=0.79  Score=48.22  Aligned_cols=28  Identities=29%  Similarity=0.481  Sum_probs=26.0

Q ss_pred             eeeeeecceeeeCCCeEEEEEEEecCCC
Q 008822           41 TLKLQTDKNVYTPGDTVFVTVEICNPLS   68 (552)
Q Consensus        41 ~l~l~~dk~vY~PGd~V~~~Iei~~~~~   68 (552)
                      .|++++||+.|.|||.|.+.|+|.|-++
T Consensus       214 ~L~vsLdK~~Y~pGE~I~V~v~I~N~Ss  241 (380)
T 3ugu_A          214 RLAVSLSKEIYYHGEPIPVTVAVTNSTE  241 (380)
T ss_dssp             EEEEEESCSEEETTCCEEEEEEEEECSS
T ss_pred             EEEEEeCCccCcCCCEEEEEEEEEcCCC
Confidence            4789999999999999999999999993

>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A

Probab=83.85  E-value=27  Score=36.45  Aligned_cols=133  Identities=14%  Similarity=0.192  Sum_probs=78.7

Q ss_pred             eCCEEEEEEEccCCCcceecCCcEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCCCCceeeEEEeee--eee
Q 008822          381 MDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHH--EVV  458 (552)
Q Consensus       381 rng~~VarlsLs~pkpaYrLGEdI~GtlDF~~~~~~irC~qVSvsLESeE~Inp~~~~~S~~s~~~~rkvhae~h--E~c  458 (552)
                      +.|..-+.++|.  |..|..||.|...++.++ .+...+..+.+.|.-...+-- |..     .. .+++.++..  +-.
T Consensus       193 ~sG~l~l~~sld--k~~Y~pGE~I~v~v~I~N-~S~k~Vk~Ikv~L~Q~~~~~~-~s~-----~~-~k~~Va~~e~~~~V  262 (393)
T 1g4m_A          193 SDKPLHLEASLD--KEIYYHGEPISVNVHVTN-NTNKTVKKIKISVRQYADICL-FNT-----AQ-YKCPVAMEEADDTV  262 (393)
T ss_dssp             SSSCEEEEEEES--CSEEETTCCEEEEEEEEE-CSSCCEEEEEEEEEEEEEECS-SBC-----EE-EEEEEEEEEECCCB
T ss_pred             cCCCEEEEEEEC--CceEcCCCEEEEEEEEEc-CCCCEEeEEEEEEEEEEEEEE-ecC-----Cc-eEEEEEEEecCCcC
Confidence            466777778884  789999999999999984 567777888888877653210 100     01 112222222  211


Q ss_pred             c-ccc-eeeEEecCCCCCC-----------------Cc-eEeCcee-----------EEEEEEEEEEecCCCccccccCC
Q 008822          459 A-DLV-QTSFLFSIPMDGP-----------------MS-FSTPYVS-----------VQWALRFEFLTTPKHVQWTRYEH  507 (552)
Q Consensus       459 l-d~~-~T~F~L~IP~~aT-----------------Pq-F~Td~Vs-----------LkW~LRFEFVts~~~~~wqa~e~  507 (552)
                      . +.. +..|.| +|.-++                 .. -.+.+++           +...|+++..+.. +.....   
T Consensus       263 ~~gs~~~~~~~L-~P~l~p~~~~~~~aldg~lk~~dt~l~ss~ii~~~~~~~~~gi~VsY~vkV~l~v~~-gg~~~~---  337 (393)
T 1g4m_A          263 APSSTFCKVYTL-TPFLANNREKRGLALDGKLKHEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSR-GGLLGD---  337 (393)
T ss_dssp             CTTEEEEEEEEE-CCCGGGTTTCSSEEESSCTTSTTCCBCCCCCCCTTCCSGGGSEEEEEEEEEEEEECC-C--------
T ss_pred             CCCCEEeeEEEE-cCCCCCcccccceeeccccccCCcccccceeecCCCCccccceEEEEEEEEEEEecC-CCcccc---
Confidence            1 111 224555 555442                 12 3445777           9999999988854 111111   


Q ss_pred             CCCcCCceEEEEEeeeEEeCCCCCC
Q 008822          508 PLLIEGRDKSEWVLPITVHAPPSGA  532 (552)
Q Consensus       508 ~~~l~e~EtF~W~LPItVlPt~P~~  532 (552)
                         + --......|||+|..+.|..
T Consensus       338 ---~-~~~~l~~~lPi~i~~p~p~~  358 (393)
T 1g4m_A          338 ---L-ASSDVAVELPFTLMHPKPKE  358 (393)
T ss_dssp             -------CEEEEEEEEEEECCCCC-
T ss_pred             ---c-ccccEEEEeCEEEecCCCCc
Confidence               1 13577899999999877765

>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}

Probab=80.56  E-value=7.3  Score=40.27  Aligned_cols=99  Identities=14%  Similarity=0.150  Sum_probs=60.3

Q ss_pred             eeeeeecceeeeCCCeEEEEEEEecCCCCCCcccchhhhhccceEEEEEEEeccCcceeecCCCCCCccccccEEEeccC
Q 008822           41 TLKLQTDKNVYTPGDTVFVTVEICNPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFLDIS  120 (552)
Q Consensus        41 ~l~l~~dk~vY~PGd~V~~~Iei~~~~~~~~~~~~~s~l~e~Ls~ei~g~ek~D~q~~~~~~pl~~skq~rge~if~~~~  120 (552)
                      .++..++|..|.+||+|.-.|.|....          .-++.+..++.-.|..       .++.+   +      .. +.
T Consensus       177 ~ieF~~~ks~y~l~d~I~G~I~f~~s~----------i~Ik~iel~LiR~Et~-------~~~~~---~------~~-e~  229 (341)
T 2fau_A          177 HIEFEYNKSKYHLKDVIVGKIYFLLVR----------IKIQHMELQLIKKEIT-------GIGPS---T------TT-ET  229 (341)
T ss_dssp             EEEEEESCSEEETTCEEEEEEEEEEEC----------SCEEEEEEEEEEEEEE-------SCGGG---C------EE-EE
T ss_pred             EEEEEEccccccCCCeEEEEEEEEEec----------cceEEEEEEEEEEEEE-------cCCCC---e------ee-EE
Confidence            567889999999999999888776422          3467777776655543       22211   1      11 11


Q ss_pred             cceeeeccccCCCC---eeEEEEEEecCC-CCCCCCc--cceEEEEEEEEEEEe
Q 008822          121 ASKLISNQIVSSDA---TKSYVIRTELPS-IIPPSYR--GTTIRYLYYVKSTLS  168 (552)
Q Consensus       121 ~~~Lvsd~~l~~g~---tk~y~vr~~LP~-~lPPSyR--G~~vRy~Y~i~at~~  168 (552)
                      +  .+.+.-+..|+   -.+.-+|+.||. .|+|||+  -..+.-=|+|.-++.
T Consensus       230 ~--~i~k~eImDG~p~rge~IPirl~Lp~~~l~PT~~~~~~~fsV~Y~Lnlvlv  281 (341)
T 2fau_A          230 E--TIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLV  281 (341)
T ss_dssp             E--EEEEEECCCC------CEEEEEESTTTCCCCCEEEEETTEEEEEEEEEEEE
T ss_pred             E--EEEEEEEeCCCccCCCEEEEEEEcCCCCCCCcchhcCCeEEEEEEEEEEEE
Confidence            1  12222222222   235557999997 6999999  777777777755543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	552
d1cf1a2	211	Arrestin {Cow (Bos taurus), visual arrestin [TaxId	95.99
d1g4ma2	218	Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId	95.66
d1cf1a2	211	Arrestin {Cow (Bos taurus), visual arrestin [TaxId	90.4
d1g4ma2	218	Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId	90.27

>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), visual arrestin [TaxId: 9913]

Probab=95.99  E-value=0.049  Score=50.31  Aligned_cols=27  Identities=30%  Similarity=0.496  Sum_probs=25.6

Q ss_pred             eeeeeecceeeeCCCeEEEEEEEecCC
Q 008822           41 TLKLQTDKNVYTPGDTVFVTVEICNPL   67 (552)
Q Consensus        41 ~l~l~~dk~vY~PGd~V~~~Iei~~~~   67 (552)
                      .|++++||..|.|||.|.++|+|.|.+
T Consensus        22 ~l~~~ldr~~Y~~Ge~I~v~v~i~N~s   48 (211)
T d1cf1a2          22 RLAVSLSKEIYYHGEPIPVTVAVTNST   48 (211)
T ss_dssp             EEEEEESCSEEETTCCEEEEEEEEECS
T ss_pred             EEEEEECCceEcCCCEEEEEEEEEcCC
Confidence            589999999999999999999999977

>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]

Probab=95.66  E-value=0.096  Score=48.00  Aligned_cols=27  Identities=30%  Similarity=0.506  Sum_probs=25.9

Q ss_pred             eeeeeecceeeeCCCeEEEEEEEecCC
Q 008822           41 TLKLQTDKNVYTPGDTVFVTVEICNPL   67 (552)
Q Consensus        41 ~l~l~~dk~vY~PGd~V~~~Iei~~~~   67 (552)
                      +|++++||..|.|||.|.+.|+|.|.+
T Consensus        23 ~l~~~l~~~~y~~Ge~I~v~v~i~N~s   49 (218)
T d1g4ma2          23 HLEASLDKEIYYHGEPISVNVHVTNNT   49 (218)
T ss_dssp             EEEEEESCSEEETTCCEEEEEEEEECS
T ss_pred             EEEEEECCCeEcCCCEEEEEEEEECCC
Confidence            689999999999999999999999987

>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), visual arrestin [TaxId: 9913]

Probab=90.40  E-value=6.1  Score=35.68  Aligned_cols=146  Identities=12%  Similarity=0.204  Sum_probs=83.5

Q ss_pred             cceEEEEeCCEEEEEEEccCCCcceecCCcEEEEEEecCCCCceeEEEEEEEEEEeeeecC----Ccc-----CCCCCC-
Q 008822          374 GRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINR----WFV-----HPSRRN-  443 (552)
Q Consensus       374 ~ksY~I~rng~~VarlsLs~pkpaYrLGEdI~GtlDF~~~~~~irC~qVSvsLESeE~Inp----~~~-----~~S~~s-  443 (552)
                      .+.| +-..|..-..+.|.  |..|..||.|...++..+ .+...+-.+.+.|.-.-.+--    .|.     ...... 
T Consensus        11 ~k~f-~~~sg~l~l~~~ld--r~~Y~~Ge~I~v~v~i~N-~s~~~v~~i~~~l~Q~~~~~~~s~~~~~~~Va~~e~~~~~   86 (211)
T d1cf1a2          11 SWQF-FMSDKPLRLAVSLS--KEIYYHGEPIPVTVAVTN-STEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKV   86 (211)
T ss_dssp             EEEE-EETTEEEEEEEEES--CSEEETTCCEEEEEEEEE-CSSSCEEEEEEEEEEEEEECSSSCCEEEEEEEEEEESCCB
T ss_pred             EeeE-EecCCCEEEEEEEC--CceEcCCCEEEEEEEEEc-CCCcceeeEEEEEEEEEEEEEecCCceEEEEEEEEecCcc
Confidence            4556 34567888888885  789999999999999985 566777778888776554411    000     000000 


Q ss_pred             --CCceeeEEEee---------eeeecc----cceeeEEecCCCCCCCceEeCceeEEEEEEEEEEecCCCccccccCCC
Q 008822          444 --SPTITKIQSDH---------HEVVAD----LVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHP  508 (552)
Q Consensus       444 --~~~~rkvhae~---------hE~cld----~~~T~F~L~IP~~aTPqF~Td~VsLkW~LRFEFVts~~~~~wqa~e~~  508 (552)
                        ..+..++|+..         +.+.++    ...+.+....|..-+....+.++.+...|+++..+...+..+.     
T Consensus        87 ~~~~t~~k~~~l~p~~~~~k~~~~ialdg~~k~e~~~las~~~~~~~~~~~~~gI~VsY~vkV~l~~~~~~g~~~-----  161 (211)
T d1cf1a2          87 PPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELT-----  161 (211)
T ss_dssp             CTTEEEEEEEEECCCGGGCSCCSSSCBSSCTTBTTCCBCCCCCCCTTSCGGGGSEEEEEEEEEEEEECCCTTCSS-----
T ss_pred             CCCcceEEEEEeeeccccCccceeeeecccccccccccccccccCCCCCCccceEEEEEEEEEEEEecCCccccc-----
Confidence              00011111110         001111    1112233334444456677788999999999999965322221     


Q ss_pred             CCcCCceEEEEEeeeEEeCCCCCCC
Q 008822          509 LLIEGRDKSEWVLPITVHAPPSGAP  533 (552)
Q Consensus       509 ~~l~e~EtF~W~LPItVlPt~P~~~  533 (552)
                           .......|||++..+.|...
T Consensus       162 -----~sdv~veLP~~l~~p~P~~~  181 (211)
T d1cf1a2         162 -----SSEVATEVPFRLMHPQPEDP  181 (211)
T ss_dssp             -----CEEEEEEEEEEEEBCCCCC-
T ss_pred             -----cCCceEEECeeeecCCCCCC
Confidence                 23557789999976666543

>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]

Probab=90.27  E-value=6  Score=35.46  Aligned_cols=146  Identities=11%  Similarity=0.103  Sum_probs=83.9

Q ss_pred             cceEEEEeCCEEEEEEEccCCCcceecCCcEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCC---------CCCC
Q 008822          374 GRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPS---------RRNS  444 (552)
Q Consensus       374 ~ksY~I~rng~~VarlsLs~pkpaYrLGEdI~GtlDF~~~~~~irC~qVSvsLESeE~Inp~~~~~S---------~~s~  444 (552)
                      .+.| +-..|.....+.|.  |..|..||.|...++..+ .+...+..+.+.|.-.-.+...-....         ....
T Consensus        12 ~k~f-~~~sg~~~l~~~l~--~~~y~~Ge~I~v~v~i~N-~s~~~v~~i~~~l~q~~~~~~~~~~~~~~~v~~~~~~~~~   87 (218)
T d1g4ma2          12 TRQF-LMSDKPLHLEASLD--KEIYYHGEPISVNVHVTN-NTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEADDTV   87 (218)
T ss_dssp             EEEC-BSSSSCEEEEEEES--CSEEETTCCEEEEEEEEE-CSSCCEEEEEEEEEEEEEECSSBCEEEEEEEEEEEECCCB
T ss_pred             eeee-EeeCCcEEEEEEEC--CCeEcCCCEEEEEEEEEC-CCCCEEeeEEEEEEEEEEEEEecCCcEEEEEEEEeecccc
Confidence            4456 45578888999995  789999999999999974 567777788888866555421100000         0000


Q ss_pred             CceeeEEEeeeeeec--cc-------------ceeeEEecCCCCCCCceEe-CceeEEEEEEEEEEecCCCccccccCCC
Q 008822          445 PTITKIQSDHHEVVA--DL-------------VQTSFLFSIPMDGPMSFST-PYVSVQWALRFEFLTTPKHVQWTRYEHP  508 (552)
Q Consensus       445 ~~~rkvhae~hE~cl--d~-------------~~T~F~L~IP~~aTPqF~T-d~VsLkW~LRFEFVts~~~~~wqa~e~~  508 (552)
                      .+..+..-.++..++  ..             ......+.+|...++.++. .++.+.+.|+.+..+....  +..  . 
T Consensus        88 ~~~st~~k~~~l~~~~~~n~~~~~ial~~~~~~~~~~l~~~p~~~~~~~~~~~~I~V~Y~lkV~~~v~~~~--~~~--~-  162 (218)
T d1g4ma2          88 APSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSRGG--LLG--D-  162 (218)
T ss_dssp             CTTEEEEEEEEECCCGGGTTTCSSEEESSCTTSTTCCBCCCCCCCTTCCSGGGSEEEEEEEEEEEEECCC----------
T ss_pred             CCCcceEeEEEecccccccceeeeEecCcccceeeccccccccCCCCccccceeEEEEEEEEEEEEecCCc--ccC--c-
Confidence            000001111111111  00             0113345677777777765 5699999999999986521  000  0 


Q ss_pred             CCcCCceEEEEEeeeEEeCCCCC
Q 008822          509 LLIEGRDKSEWVLPITVHAPPSG  531 (552)
Q Consensus       509 ~~l~e~EtF~W~LPItVlPt~P~  531 (552)
                        + ..-.....||+++.++.|.
T Consensus       163 --~-~~~~v~~~lP~~l~~p~p~  182 (218)
T d1g4ma2         163 --L-ASSDVAVELPFTLMHPKPK  182 (218)
T ss_dssp             ------CEEEEEEEEEEECCCCC
T ss_pred             --e-ecCceEEEECceecCCCCc
Confidence              1 2344677999998765443