Citrus Sinensis ID: 008827

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550--
Protein Sequence
MPLLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDSLV
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHcccccHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHcccccHHHHcccccHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHcHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHEccccccHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccEEEEccHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MPLLKSYMEVVDAGARSLKMIYqskmapkydflQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKnnpevvsqfvgpdtgrTLSCIIEIVKDRFARTRLLASLCLIVIrnaspcylqdvgiKTKLINNLLEllddpgrvgdeASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHlqkgslhprRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIknlsagsfmnetIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASlicdpepsvQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLgnvatgkeshkEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLtcssspgssgrlvklhdagivshvknmvndpcldVKLRVKTALEQFnsfddslv
Flexible Loop (DISEMBL)
MPLLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKnnpevvsqfvgpdtgrTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSiknlsagsfmNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCssspgssgrLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALeqfnsfddslv
Low Complexity Region (SEG)
MPLLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQeenmefllsllnnesenvsglGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTirlnalralrnliflaEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDSLV
Disordered region (IsUnstruct)
*******MEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSS*****GRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF********
Disordered Region (DISOPRED)
****KSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD****
Disordered Region (DISEMBL)
MPLLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDSLV
Disordered Region (DISPRO)
*PLLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPLLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDSLV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	552	2.2.26 [Sep-21-2011]
Q05AL1	673	Armadillo repeat-containi	yes	no	0.952	0.781	0.256	2e-30
Q2KI54	673	Armadillo repeat-containi	yes	no	0.956	0.784	0.258	1e-29
Q9DBR3	673	Armadillo repeat-containi	yes	no	0.956	0.784	0.256	2e-28
Q8IUR7	673	Armadillo repeat-containi	yes	no	0.956	0.784	0.255	2e-28
Q5R6S3	673	Armadillo repeat-containi	yes	no	0.956	0.784	0.253	3e-27
Q68FK4	720	Armadillo repeat-containi	N/A	no	0.505	0.387	0.301	5e-25
O13986	789	Uncharacterized protein C	yes	no	0.681	0.476	0.255	7e-22
P40547	921	Vacuolar import and degra	yes	no	0.432	0.259	0.221	4e-07
Q503E9	536	Importin subunit alpha-6	no	no	0.405	0.417	0.252	1e-06
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.456	0.471	0.228	2e-06

>sp|Q05AL1|ARMC8_DANRE Armadillo repeat-containing protein 8 OS=Danio rerio GN=armc8 PE=2 SV=1

 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 147/574 (25%), Positives = 262/574 (45%), Gaps = 48/574 (8%)

Query: 3   LLKSYMEVVDAGARSLKMIYQSKMAP-KYDFLQEENMEFLLSLLNNESENVSGLGASIIS 61
           LL S +  ++A  R L+ ++ S + P +  +     +  L+SLL+  S++       I +
Sbjct: 114 LLCSDLIFIEACLRCLRTVFISPVTPVQLLYTDPTVIPHLMSLLS-RSQHTQEYITQIFA 172

Query: 62  HSCKTSLEQKLLFDAGVLKRLTSLL-GGSLIQRDASLESIATIFKNNPEVVSQFVGPDT- 119
           H CKT   Q +LF+ G ++ +  LL   S   R  +L+  + +   N +V    V     
Sbjct: 173 HCCKTPEHQTVLFNHGAIQNIAPLLISPSYKVRMQALKCFSVLAYENAQVSMTLVNVLVD 232

Query: 120 GRTLSCII--EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG 177
           G  LS +    + +D+    +L A+ CL  +  A     +D  I  K +  L+ +     
Sbjct: 233 GEQLSQVFVRMMQRDKPIEMQLTAAKCLTYMCRAGAIRTEDNCIVLKTLPCLVRMCSKER 292

Query: 178 RVGD--EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGI-------- 227
            + +  E +   + L+    ++Q++A   +  D L + L     +P     I        
Sbjct: 293 LLEERVEGAETLAYLMEPDIELQRIA---SVTDHLVSMLADYFKYPSSVSAITDIKRLDH 349

Query: 228 ------------LLALADMCSKLECCRSRCLSLQ-VLKLVVDALAHDSSDVRSAACMCLR 274
                           A + S  E  R +    + ++  +V  L+  S  VR AA  CL 
Sbjct: 350 DLKHAHELRQAAFKLYASLGSNDEDIRKKITETENMMDRIVSGLSESSIKVRLAAVRCLH 409

Query: 275 SVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG 334
           S+SRS++ L   SF +  +  PL++LL +    V V A   + N++++F+  +   +  G
Sbjct: 410 SLSRSVQQLRT-SFHDHAVWKPLMKLLQNAPDEVLVMASSTLCNLLLEFSPSKEPILESG 468

Query: 335 GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQ 394
            ++LL  L++S  S +R+N + AL N+ F A+ K K EI   L    L  L+ DP+ +V 
Sbjct: 469 VIELLCSLTQSDSSALRVNGIWALMNMAFQADQKVKVEIVRALGTEQLFRLLSDPDTNVL 528

Query: 395 EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE 454
            + L L+RNL+  R +  + + +    I+ AV   L      E++ Q + +L N+A G  
Sbjct: 529 MKTLGLLRNLLSTRPHIDQIMSSHGKQIMQAVTLILEGEHSIEVKEQTLCILANIADGNT 588

Query: 455 SHKEAVM--DQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVK 512
           + KE +M  D +L +        I  ++  ++ +L+ AA + + NL  +   GS  R  K
Sbjct: 589 A-KELIMTDDDMLQK--------IKYYMGHSNVKLQLAATFCISNLIWNEEDGSQERQDK 639

Query: 513 LHDAGIVS--HVKNMVNDPCLDVKLRVKTALEQF 544
           L + G V   H     +DP  D+  R KTA++Q+
Sbjct: 640 LREMGFVDILHKLTQASDP--DLCDRAKTAMQQY 671

Danio rerio (taxid: 7955)

>sp|Q2KI54|ARMC8_BOVIN Armadillo repeat-containing protein 8 OS=Bos taurus GN=ARMC8 PE=2 SV=1

 Score =  131 bits (330), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 148/572 (25%), Positives = 258/572 (45%), Gaps = 44/572 (7%)

Query: 3   LLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISH 62
           LL   ++ ++A  R L+ I+ S + P+     +  +   L  L + S         I SH
Sbjct: 114 LLSPDLKFIEACLRCLRTIFTSPVTPEELLYTDATVIPHLMALLSRSRYTQEYICQIFSH 173

Query: 63  SCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDT-G 120
            CK    Q +LF+ G ++ +  LL   S   R  +L+  + +   NP+V    V     G
Sbjct: 174 CCKGPDHQTILFNHGAVQNIAHLLTSVSYKVRMQALKCFSVLAFENPQVSMTLVNVLVDG 233

Query: 121 RTLSCII--EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLE------L 172
             L  I    + +D+    +L ++ CL  +  A      D  I  K +  L+       L
Sbjct: 234 ELLPQIFVKMLQRDKPIEMQLTSAKCLTYMCRAGAIRTDDNCIVLKTLPCLVRMCSKERL 293

Query: 173 LDDPGRVGDEASFAF---------------SSLIAEKEDMQKLAFEVNGVD--KLYNHLQ 215
           L++  RV    + A+                 LIA   D  K    V+ +   K  +H  
Sbjct: 294 LEE--RVEGAETLAYLIEPDVELQRIASITDHLIAMLADYFKYPSSVSAITDIKRLDHDL 351

Query: 216 KGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ-VLKLVVDALAHDSSDVRSAACMCLR 274
           K + H  R     L  A + +  E  R + +  + ++  +V  L+  S  VR AA  CL 
Sbjct: 352 KHA-HELRQAAFKL-YASLGANDEDIRKKIIDTENMMDRIVTGLSESSVKVRLAAVRCLH 409

Query: 275 SVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG 334
           S+SRS++ L   SF +  +  PL+++L +    + V A   + N++++F+  +   +  G
Sbjct: 410 SLSRSVQQLRT-SFQDHAVWKPLMKVLQNAPDEILVVASSMLCNLLLEFSPSKEPILESG 468

Query: 335 GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQ 394
            V+LL  L++S +  +R+N + AL N+ F AE K K +I   L+   L  L+ D + +V 
Sbjct: 469 AVELLCGLTQSENPALRVNGIWALMNMAFQAEQKIKADILRSLSTEQLFRLLSDSDLNVL 528

Query: 395 EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE 454
            + L L+RNL+  R +  + +      I+ AV   L      E++ Q + +L N+A G  
Sbjct: 529 MKTLGLLRNLLSTRPHIDKIMSTHGKQIMQAVTLILEGEHNIEVKEQTLCILANIADGTT 588

Query: 455 SHKEAVM--DQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVK 512
           + KE +M  D +L +        I  ++  +  +L+ AA++ + NL  +   GS  R  K
Sbjct: 589 A-KELIMTNDDILQK--------IKYYMGHSHVKLQLAAMFCISNLVWNEEEGSQERQDK 639

Query: 513 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 544
           L D GIV  +  +   P  ++  + KTAL+Q+
Sbjct: 640 LRDMGIVDILHKLSQSPDSNLCDKAKTALQQY 671

Bos taurus (taxid: 9913)

>sp|Q9DBR3|ARMC8_MOUSE Armadillo repeat-containing protein 8 OS=Mus musculus GN=Armc8 PE=1 SV=2

 Score =  127 bits (320), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 147/572 (25%), Positives = 257/572 (44%), Gaps = 44/572 (7%)

Query: 3   LLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISH 62
           LL   ++ ++A  R L+ I+ S + P+     +  +   L  L + S         I SH
Sbjct: 114 LLSPDLKFIEACLRCLRTIFTSPVTPEELLYTDATVIPHLMALLSRSRYTQEYICQIFSH 173

Query: 63  SCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDT-G 120
            CK    Q +LF+ G ++ +  LL   S   R  +L+  + +   NP+V    V     G
Sbjct: 174 CCKGPDHQTILFNHGAVQNIAHLLTSPSYKVRMQALKCFSVLAFENPQVSMTLVNVLVDG 233

Query: 121 RTLSCII--EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLE------L 172
             L  I    + +D+    +L ++ CL  +  A      D  I  K +  L+       L
Sbjct: 234 ELLPQIFVKMLQRDKPIEMQLTSAKCLTYMCRAGAIRTDDSCIVLKTLPCLVRMCSKERL 293

Query: 173 LDDPGRVGDEASFAF---------------SSLIAEKEDMQKLAFEVNGVD--KLYNHLQ 215
           L++  RV    + A+                 LIA   D  K    V+ +   K  +H  
Sbjct: 294 LEE--RVEGAETLAYLIEPDVELQRIASITDHLIAMLADYFKYPSSVSAITDIKRLDHDL 351

Query: 216 KGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ-VLKLVVDALAHDSSDVRSAACMCLR 274
           K + H  R     L  A + +  E  R + +  + ++  +V   +  S  VR AA  CL 
Sbjct: 352 KHA-HELRQAAFKL-YASLGANDEDIRKKIIETETMMDRIVTGSSESSVKVRLAAVRCLH 409

Query: 275 SVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG 334
           S+SRS++ L   SF +  +  PL+++L +    + V A   + N++++F+  +   +  G
Sbjct: 410 SLSRSVQQLRT-SFQDHAVWKPLMKVLQNAPDEILVVASSMLCNLLLEFSPSKEPILESG 468

Query: 335 GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQ 394
            V+LL  L++S +  +R+N + AL N+ F AE K K +I   L+   L  L+ D + +V 
Sbjct: 469 AVELLCGLTQSENPALRVNGIWALMNMAFQAEQKIKADILRSLSTEQLFRLLSDSDMNVL 528

Query: 395 EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE 454
            + L L+RNL+  R +  + +      I+ AV   L      E++ Q + +L N+A G  
Sbjct: 529 MKTLGLLRNLLSTRPHIDKIMSTHGKQIMQAVTLILEGEHSIEVKEQTLCILANIADGTT 588

Query: 455 SHKEAVM--DQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVK 512
           + KE +M  D +L +        I  ++  +  +L+ AA++ + NLT +   GS  R  K
Sbjct: 589 A-KELIMTNDDILQK--------IKYYMGHSHVKLQLAAMFCISNLTWNEEEGSQERQDK 639

Query: 513 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 544
           L D GIV  +  +      ++  + KTAL+Q+
Sbjct: 640 LRDMGIVDILHKLSQSADSNLCDKAKTALQQY 671

Mus musculus (taxid: 10090)

>sp|Q8IUR7|ARMC8_HUMAN Armadillo repeat-containing protein 8 OS=Homo sapiens GN=ARMC8 PE=1 SV=2

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 146/572 (25%), Positives = 257/572 (44%), Gaps = 44/572 (7%)

Query: 3   LLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISH 62
           LL   ++ ++A  R L+ I+ S + P+     +  +   L  L + S         I SH
Sbjct: 114 LLSPDLKFIEACLRCLRTIFTSPVTPEELLYTDATVIPHLMALLSRSRYTQEYICQIFSH 173

Query: 63  SCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDT-G 120
            CK    Q +LF+ G ++ +  LL   S   R  +L+  + +   NP+V    V     G
Sbjct: 174 CCKGPDHQTILFNHGAVQNIAHLLTSLSYKVRMQALKCFSVLAFENPQVSMTLVNVLVDG 233

Query: 121 RTLSCII--EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLE------L 172
             L  I    + +D+    +L ++ CL  +  A      D  I  K +  L+       L
Sbjct: 234 ELLPQIFVKMLQRDKPIEMQLTSAKCLTYMCRAGAIRTDDNCIVLKTLPCLVRMCSKERL 293

Query: 173 LDDPGRVGDEASFAF---------------SSLIAEKEDMQKLAFEVNGVD--KLYNHLQ 215
           L++  RV    + A+                 LIA   D  K    V+ +   K  +H  
Sbjct: 294 LEE--RVEGAETLAYLIEPDVELQRIASITDHLIAMLADYFKYPSSVSAITDIKRLDHDL 351

Query: 216 KGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ-VLKLVVDALAHDSSDVRSAACMCLR 274
           K + H  R     L  A + +  E  R + +  + ++  +V  L+  S  VR AA  CL 
Sbjct: 352 KHA-HELRQAAFKL-YASLGANDEDIRKKIIETENMMDRIVTGLSESSVKVRLAAVRCLH 409

Query: 275 SVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG 334
           S+SRS++ L   SF +  +  PL+++L +    + V A   + N++++F+  +   +  G
Sbjct: 410 SLSRSVQQLRT-SFQDHAVWKPLMKVLQNAPDEILVVASSMLCNLLLEFSPSKEPILESG 468

Query: 335 GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQ 394
            V+LL  L++S +  +R+N + AL N+ F AE K K +I   L+   L  L+ D + +V 
Sbjct: 469 AVELLCGLTQSENPALRVNGIWALMNMAFQAEQKIKADILRSLSTEQLFRLLSDSDLNVL 528

Query: 395 EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE 454
            + L L+RNL+  R +  + +      I+ AV   L      E++ Q + +L N+A G  
Sbjct: 529 MKTLGLLRNLLSTRPHIDKIMSTHGKQIMQAVTLILEGEHNIEVKEQTLCILANIADGTT 588

Query: 455 SHKEAVM--DQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVK 512
           + K+ +M  D +L +        I  ++  +  +L+ AA++ + NL  +   GS  R  K
Sbjct: 589 A-KDLIMTNDDILQK--------IKYYMGHSHVKLQLAAMFCISNLIWNEEEGSQERQDK 639

Query: 513 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 544
           L D GIV  +  +   P  ++  + K AL+Q+
Sbjct: 640 LRDMGIVDILHKLSQSPDSNLCDKAKMALQQY 671

Homo sapiens (taxid: 9606)

>sp|Q5R6S3|ARMC8_PONAB Armadillo repeat-containing protein 8 OS=Pongo abelii GN=ARMC8 PE=2 SV=1

 Score =  124 bits (310), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 145/572 (25%), Positives = 255/572 (44%), Gaps = 44/572 (7%)

Query: 3   LLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISH 62
           LL   ++ ++A  R  + I+ S + P+     +  +   L  L + S         I SH
Sbjct: 114 LLSPDLKFIEACLRCPRTIFTSPVTPEELLYTDATVIPHLMALLSRSRYTQEYICQIFSH 173

Query: 63  SCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDT-G 120
            CK    Q +LF+ G ++ +  LL   S   R  +L+  + +   NP+V    V     G
Sbjct: 174 CCKGPDHQTILFNHGAVQNIAHLLTSLSYKVRMQALKCFSVLAFENPQVSMTLVNVLVDG 233

Query: 121 RTLSCII--EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLE------L 172
             L  I    + +D+    +L ++ CL  +  A      D  I  K +  L+       L
Sbjct: 234 ELLPQIFVKMLQRDKPIEMQLTSAKCLTYMCRAGAIRTDDNCIVLKTLPCLVRMCSKERL 293

Query: 173 LDDPGRVGDEASFAF---------------SSLIAEKEDMQKLAFEVNGVD--KLYNHLQ 215
           L++  RV    + A+                 LIA   D  K    V+ +   K  +H  
Sbjct: 294 LEE--RVEGAETLAYLIEPDVELQRIASITDHLIAMLADYFKYPSSVSAITDIKRLDHDL 351

Query: 216 KGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ-VLKLVVDALAHDSSDVRSAACMCLR 274
           K + H  R     L  A + +  E  R + +  + ++  +V  L+  S  VR AA  CL 
Sbjct: 352 KHA-HELRQAAFKL-YASLGANDEDIRKKIIETENMMDRIVTGLSESSVKVRLAAVRCLH 409

Query: 275 SVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG 334
           S+SRS++ L   SF +  +  PL+++L +    + V A   + N++++F+  +   +  G
Sbjct: 410 SLSRSVQQLRT-SFQDHAVWKPLMKVLQNAPDEILVVASSMLCNLLLEFSPSKEPILESG 468

Query: 335 GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQ 394
            V+LL  L++S +  +R+N + AL N  F AE K K +I   L+   L  L+ D + +V 
Sbjct: 469 AVELLCGLTQSENPALRVNGIWALMNTAFQAEQKIKADILRSLSTEQLFRLLSDSDLNVL 528

Query: 395 EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE 454
            + L L+RNL+  R +  + +      I+ AV   L      E++ Q + +L N+A G  
Sbjct: 529 MKTLGLLRNLLSTRPHIDKIMSTHGKQIMQAVTLILEGEHNIEVKEQTLCILANIADGTT 588

Query: 455 SHKEAVM--DQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVK 512
           + K+ +M  D +L +        I  ++  +  +L+ AA++ + NL  +   GS  R  K
Sbjct: 589 A-KDLIMTNDDILQK--------IKYYMGHSHVKLQLAAMFCISNLIWNEEEGSQERQDK 639

Query: 513 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 544
           L D GIV  +  +   P  ++  + K AL+Q+
Sbjct: 640 LRDMGIVDILHKLSQSPDSNLCDKAKMALQQY 671

Pongo abelii (taxid: 9601)

>sp|Q68FK4|ARMC8_XENLA Armadillo repeat-containing protein 8 OS=Xenopus laevis GN=armc8 PE=2 SV=1

 Score =  116 bits (290), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 154/295 (52%), Gaps = 16/295 (5%)

Query: 254 VVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAAL 313
           +V+ L+  S  VR AA  CL S+SRS++ L   SF +  +  PL+++L +    + V A 
Sbjct: 436 IVNGLSETSVKVRLAAVRCLHSLSRSVQQLRT-SFQDHAVWKPLMKVLQNAPDDILVVAS 494

Query: 314 GAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEI 373
             + N++++F+  +   +  G V+LL  L+ S +  +R+N + AL N+ F A+ K K +I
Sbjct: 495 STLCNLLLEFSPSKEPILESGAVELLCSLTLSENPALRVNGIWALMNMAFQADQKIKSDI 554

Query: 374 FMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA 433
              L+   L  L+ D + +V  + L L+RNL+  R +  + +      I+ AV   L   
Sbjct: 555 LRGLSTEQLFQLLSDSDVNVLMKTLGLLRNLLSTRPHIDQIMSTHGKQIMQAVTFILEGE 614

Query: 434 SKAEIEIQGMYVLGNVATGKESHKEAVM--DQLLLRAENKAQSCIIKFLQSNDSRLRTAA 491
              E++ Q + +L N+A G  + K+ +M  D +L +        I  ++  ++ +L+ AA
Sbjct: 615 HNIEVKEQTLCILANIADGTTA-KDLIMTNDDILQK--------IKYYVGHSNLKLQLAA 665

Query: 492 VWAVLNLTCSSSPGSSGRLVKLHDAGIVS--HVKNMVNDPCLDVKLRVKTALEQF 544
           ++ + NLT +   GS  R  KL + GIV   H  +   DP L  K   KTAL+Q+
Sbjct: 666 MFCIANLTWNEEEGSQERQDKLREIGIVDILHKLSQSTDPNLCDK--AKTALQQY 718

Xenopus laevis (taxid: 8355)

>sp|O13986|YEG4_SCHPO Uncharacterized protein C26H5.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC26H5.04 PE=4 SV=3

 Score =  105 bits (263), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 188/411 (45%), Gaps = 35/411 (8%)

Query: 87  GGSLIQRDASLESIATIFKNNPEVV----SQFVGPDTGRTLSCIIEIVKDRFARTRLLAS 142
            G +  RD  L+ I  +F+ N + V    S+  GP+    ++ +  +V+      RLL+ 
Sbjct: 249 NGHVSPRDMDLDEIENVFEGNKDKVALFKSEIFGPNGDEYITQLFCLVRQFDPCIRLLSI 308

Query: 143 LCLIVIRNASPCYL-QDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLA 201
            CL+ +  A      Q   I+  +   L+ L  +       A    + +I E E MQK A
Sbjct: 309 SCLVTLYKAGILSKNQTKEIQMIVTPILIRLFFESREAKQIAPRILAIIINENEIMQKTA 368

Query: 202 F------------------EVNGVDKLYNHLQ----------KGSLHPRRFEGILLALAD 233
                              E N ++ L + LQ          K        E +LLA+A 
Sbjct: 369 VNAGFIDAAKYLLEYATKEEENEINFLSDELQSSVCFNLPATKKEQKNLILESVLLAVAA 428

Query: 234 MCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETI 293
           + +  +  R   +  + L ++++AL  +S+ V+ AAC CL S+SRS+  L  G   +  +
Sbjct: 429 LTTSKDEYRKLIVDAKYLPVIINALKINSNSVKKAACECLLSLSRSVYILRTG-LADADV 487

Query: 294 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN 353
             PL++LL D  T V+  A  AI N+V+ F+  R  F+    +  L+    + DS++R  
Sbjct: 488 SEPLIKLLSDPDTRVKSTATSAICNLVLKFSPLREKFLTTNFIDTLISNISTKDSSLRKK 547

Query: 354 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVE 413
            +  LR+++F  ++  + E   ++ AS L  L  D +  VQEQ L ++RN    +  SV+
Sbjct: 548 TVWVLRHVVFGDDETIQLEPLKKIGASKLVELCNDEDLGVQEQMLQVLRNFTCQKEESVD 607

Query: 414 YIFAEDGIILDAVGRQLRIASKAEIEIQ-GMYVLGNVATGKESHKEAVMDQ 463
           ++     + L A     ++ SK  I I+  +Y+L ++A      +++++ Q
Sbjct: 608 FLLKMVPMELLAKILLEKLESKNPILIEPSIYILVHIAASDGELRDSILRQ 658

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P40547|VID28_YEAST Vacuolar import and degradation protein 28 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VID28 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 135/307 (43%), Gaps = 68/307 (22%)

Query: 264 DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVA------------ 311
           D  +A  + L+S SRS+  L   +     I   L+++L  T T  +              
Sbjct: 475 DFVAAWLLLLKSFSRSVSALRT-TLKRNKIAQLLLQILSKTYTLTKECYFAGQDFMKPEI 533

Query: 312 -----ALGAISNIVVDFTTRRSTFIRLGGVKLLVQL--------SKSMDST--------- 349
                 LG+I N VV+F+  +S  +R G + ++ ++         K+ D           
Sbjct: 534 MIMGITLGSICNFVVEFSNLQSFMLRNGIIDIIEKMLTDPLFNSKKAWDDNEDERRIALQ 593

Query: 350 ------IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRN 403
                 ++ N+L  LR+L++  +++ K ++  ++  +L+   I DP  +VQ Q   L+RN
Sbjct: 594 GIPVHEVKANSLWVLRHLMYNCQNEEKFQLLAKIPMNLILDFINDPCWAVQAQCFQLLRN 653

Query: 404 LVDG----------RINSVEY-IFAEDG--------IILDAVGRQLRIASKAEIE----I 440
           L             +   VEY I  + G         + + + +++R+ +  + +    +
Sbjct: 654 LTCNSRKIVNILLEKFKDVEYKIDPQTGNKISIGSTYLFEFLAKKMRLLNPLDTQQKKAM 713

Query: 441 QG-MYVLGNVATGKESHKEAVMDQ---LLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVL 496
           +G +Y++ N+A   E+ K+ V++Q   L + +E   ++        NDS L+ A +W + 
Sbjct: 714 EGILYIIVNLAAVNENKKQLVIEQDEILNIMSEILVETTTDSSSNGNDSNLKLACLWVLN 773

Query: 497 NLTCSSS 503
           NL  +SS
Sbjct: 774 NLLWNSS 780

Has a role in the negative regulation of gluconeogenesis. Required for both proteasome-dependent and vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q503E9|IMA5_DANRE Importin subunit alpha-6 OS=Danio rerio GN=kpna5 PE=2 SV=2

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 22/246 (8%)

Query: 266 RSAACMCLRSVSRSIKNLSAGSFMN-----ETIVIPL-VRLLDDTSTAVQVAALGAISNI 319
           RS  C      + ++ N+++G+F +     ET  +P+ + LL+     VQ  A+ A+ NI
Sbjct: 135 RSDNCTLQFEAAWALTNIASGTFQHTKVVIETGAVPIFIELLNSEYEDVQEQAVWALGNI 194

Query: 320 VVDFTTRRSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELT 378
             D    R   +  G +  L QL +KS   T   NA+ AL NL      K     F +++
Sbjct: 195 AGDNAECRDYVLNCGILPSLQQLLAKSNRLTTTRNAVWALSNL---CRGKNPPPDFAKVS 251

Query: 379 A--SLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA 436
              S+L+ L+   +P V   A   +  L DG  + ++ +  + G+    V  +L + S  
Sbjct: 252 PCLSVLSRLLFSSDPDVLADACWALSYLSDGPNDKIQTVI-DSGVCRRLV--ELLMHSDY 308

Query: 437 EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVL 496
           ++    +  +GN+ TG +     +  Q++L     A  C++  L S    ++  A W V 
Sbjct: 309 KVVSPALRAVGNIVTGDD-----IQTQVILNC--SALPCLLHLLSSPKESIKKEACWTVS 361

Query: 497 NLTCSS 502
           N+T  +
Sbjct: 362 NITAGN 367

Functions in nuclear protein import.

Danio rerio (taxid: 7955)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 125/276 (45%), Gaps = 24/276 (8%)

Query: 279 SIKNLSAGSFMNETIVI-----PL-VRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR 332
           ++ N+++G+  N  +V+     P+ V+LL   S  V+  A+ A+ N+  D    R   + 
Sbjct: 145 ALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVAGDSPKCRDLVLA 204

Query: 333 LGGV-KLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP 391
            GG+  LL QL++    ++  NA   L N          E++   L+A  L  LI   + 
Sbjct: 205 SGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVKPALSA--LQRLIHSQDE 262

Query: 392 SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT 451
            V   A   +  L DG  + ++ +  E G+    V  +L +   A + I  +  +GN+ T
Sbjct: 263 EVLTDACWALSYLSDGTNDKIQAVI-ESGVFPRLV--ELLMHPSASVLIPALRTVGNIVT 319

Query: 452 GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSR-LRTAAVWAVLNLTCSSSPGSSGRL 510
           G +   + V+D       ++A  C++  L +N  + ++  A W + N+T     G+  ++
Sbjct: 320 GDDMQTQCVID-------HQALPCLLNLLTNNHKKSIKKEACWTISNITA----GNREQI 368

Query: 511 VKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 546
             + +A I++ + +++     D+K     A+    S
Sbjct: 369 QAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATS 404

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	552
225435441	655	PREDICTED: armadillo repeat-containing p	0.990	0.835	0.740	0.0
224104149	666	predicted protein [Populus trichocarpa]	0.992	0.822	0.699	0.0
147805930	637	hypothetical protein VITISV_043630 [Viti	0.958	0.830	0.712	0.0
449442531	655	PREDICTED: armadillo repeat-containing p	0.983	0.829	0.668	0.0
356499477	652	PREDICTED: armadillo repeat-containing p	0.980	0.829	0.669	0.0
356569585	649	PREDICTED: armadillo repeat-containing p	0.981	0.835	0.682	0.0
255544884	675	conserved hypothetical protein [Ricinus	0.983	0.804	0.701	0.0
356524425	672	PREDICTED: armadillo repeat-containing p	0.992	0.815	0.673	0.0
15223823	666	armadillo/beta-catenin-like repeats-cont	0.981	0.813	0.587	0.0
297847504	666	armadillo/beta-catenin repeat family pro	0.981	0.813	0.580	0.0

>gi|225435441|ref|XP_002282785.1| PREDICTED: armadillo repeat-containing protein 8 [Vitis vinifera] gi|297746314|emb|CBI16370.3| unnamed protein product [Vitis vinifera]

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/547 (74%), Positives = 463/547 (84%)

Query: 3   LLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISH 62
           L  S  +VVDAGARSL+MIYQSK+APKYDFLQE+NMEFLLSLLN+E+ENV+GLGASII+H
Sbjct: 106 LSNSNGKVVDAGARSLRMIYQSKLAPKYDFLQEKNMEFLLSLLNSENENVTGLGASIITH 165

Query: 63  SCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRT 122
           SC+TS EQ  L DAGVLK+L  LL GSL QRDASLESIAT+ K+NPEVVS+FVGP+ GR 
Sbjct: 166 SCETSAEQNALCDAGVLKKLIGLLQGSLSQRDASLESIATVIKSNPEVVSKFVGPENGRA 225

Query: 123 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDE 182
           LS + E+ KDR+ RTRLLA +CLIV+RN SP  LQD+ I+TKLI  LLELLDDPG+VGDE
Sbjct: 226 LSAVTELTKDRYPRTRLLACMCLIVVRNTSPGCLQDLAIRTKLILILLELLDDPGQVGDE 285

Query: 183 ASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR 242
           ASFA SSLIAEKED+QKLAFE N +DKL NHLQKGSL  +RF+GILLALAD+CSKLE CR
Sbjct: 286 ASFALSSLIAEKEDLQKLAFEGNAIDKLCNHLQKGSLQAKRFQGILLALADLCSKLENCR 345

Query: 243 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD 302
           SR L+LQV+  V+DAL HDS +VR+AAC+CLRSVSRS+KNLSAG+FMNET+VIPLV+LL 
Sbjct: 346 SRFLALQVMNSVIDALTHDSGEVRAAACICLRSVSRSVKNLSAGNFMNETVVIPLVQLLS 405

Query: 303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 362
           DTST+VQVAALGAISNIVVDFTTR+S F++ GGVK LVQLSKSMD TIRLN++  LRNL+
Sbjct: 406 DTSTSVQVAALGAISNIVVDFTTRKSIFMQCGGVKQLVQLSKSMDPTIRLNSVWGLRNLM 465

Query: 363 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGII 422
           FLA+++CKE IF+ELTASLLASLICDPEPSVQ QAL LV NLVDG INSVEY+F ED II
Sbjct: 466 FLADNRCKEGIFLELTASLLASLICDPEPSVQVQALGLVCNLVDGCINSVEYVFVEDSII 525

Query: 423 LDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS 482
           L AVG+QL+   KAE+ IQGMYVL NVATG E HKEAVM QL  +A N  Q  IIKFLQS
Sbjct: 526 LQAVGKQLQSTLKAEVGIQGMYVLSNVATGNEFHKEAVMHQLFPQAGNSTQPIIIKFLQS 585

Query: 483 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE 542
           NDSRLRTAAVW VLNLT   S G+ GR VKL  AGI+S +KNM NDPCLDVKLRV+T L 
Sbjct: 586 NDSRLRTAAVWTVLNLTFPGSLGAYGRFVKLCSAGILSQIKNMANDPCLDVKLRVRTVLG 645

Query: 543 QFNSFDD 549
           Q  +F D
Sbjct: 646 QSLTFGD 652

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104149|ref|XP_002313338.1| predicted protein [Populus trichocarpa] gi|222849746|gb|EEE87293.1| predicted protein [Populus trichocarpa]

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/549 (69%), Positives = 464/549 (84%), Gaps = 1/549 (0%)

Query: 3   LLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISH 62
           L     +VVDA ARSL+MIYQSK+APKY+F+QE+NMEFL+SL+N+E ENV+GLGASII+H
Sbjct: 118 LFNPAEKVVDASARSLRMIYQSKLAPKYEFVQEKNMEFLISLINSECENVTGLGASIITH 177

Query: 63  SCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRT 122
           SC+TS EQ+ L DAGVLK+L SLL GSL QRD+SLES+ T+ KNNPE VS+FVGP++G  
Sbjct: 178 SCETSAEQRALCDAGVLKKLISLLEGSLSQRDSSLESLGTVLKNNPESVSKFVGPESGSA 237

Query: 123 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDE 182
           LS IIE+ KDR+ARTRLLA +CLIVIRNASP YLQD+GIK KL+  LLELLDDPG+VGDE
Sbjct: 238 LSSIIELTKDRYARTRLLACMCLIVIRNASPNYLQDIGIKAKLVYLLLELLDDPGQVGDE 297

Query: 183 ASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR 242
           A F FSSL+A KED+QKLAFE + ++K  N LQKG +HP+R +GILLALAD+CSKLE CR
Sbjct: 298 APFVFSSLVAGKEDLQKLAFEDSAINKFCNQLQKGQVHPKRLQGILLALADLCSKLESCR 357

Query: 243 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD 302
              LSL+VL  V+DAL HD ++VR++AC+CLRSV+RSIKNL  G FMNE +VI L+RLLD
Sbjct: 358 LTFLSLKVLNQVIDALTHDCANVRTSACICLRSVTRSIKNLCTGYFMNEMLVISLIRLLD 417

Query: 303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 362
           D S +VQVAALGAISNIVVDFTTR+STFI+ GG+K LVQL+KSMDST+R NAL AL+N++
Sbjct: 418 DPSVSVQVAALGAISNIVVDFTTRKSTFIQCGGIKQLVQLTKSMDSTVRFNALWALKNMM 477

Query: 363 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGII 422
           FLA+D+CKE IF+ELT SLLASLICDPEP VQEQALALVRNLVDG I S+EY+FAEDGI+
Sbjct: 478 FLADDRCKEGIFLELTGSLLASLICDPEPCVQEQALALVRNLVDGCIKSIEYVFAEDGIL 537

Query: 423 LDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS 482
           LDAVGRQL   S  E+ IQGMY+LGNVA+G E HKEAVM QLL +A+N AQS +IKFLQS
Sbjct: 538 LDAVGRQLHNVSD-EVGIQGMYLLGNVASGNEFHKEAVMRQLLAQADNGAQSFVIKFLQS 596

Query: 483 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE 542
           +DSRLRTAA+W ++NLT  S PG+ GRLV+L +AGI+S ++NMV+D CLDVKLRV+T + 
Sbjct: 597 SDSRLRTAALWVIVNLTFPSCPGAFGRLVQLKNAGIISQIRNMVHDSCLDVKLRVRTVIT 656

Query: 543 QFNSFDDSL 551
           Q  +F D L
Sbjct: 657 QSMTFGDGL 665

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805930|emb|CAN74401.1| hypothetical protein VITISV_043630 [Vitis vinifera]

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/547 (71%), Positives = 445/547 (81%), Gaps = 18/547 (3%)

Query: 3   LLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISH 62
           L  S  +VVDAGARSL+MIYQSK+APKYDFLQE+NMEFLLSLLN+E+ENV+GLGASII+H
Sbjct: 106 LSNSNGKVVDAGARSLRMIYQSKLAPKYDFLQEKNMEFLLSLLNSENENVTGLGASIITH 165

Query: 63  SCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRT 122
           SC+TS EQ  L DAGVLK+L  LL GSL QRDASLESIAT+ K+NPEVVS+FVGP+ GR 
Sbjct: 166 SCETSAEQNALCDAGVLKKLIGLLQGSLSQRDASLESIATVIKSNPEVVSKFVGPENGRA 225

Query: 123 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDE 182
           LS + E+ KDR+ RTRLLA +CLIV+RN SP  LQD+ I+TKLI  LLELLDDPG+VGDE
Sbjct: 226 LSAVTELTKDRYPRTRLLACMCLIVVRNTSPGCLQDLAIRTKLILILLELLDDPGQVGDE 285

Query: 183 ASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR 242
           ASFA SSLIAEKED+QKLAFE N +DKL NHLQKGSL  +RF+GILLALAD+CSKLE CR
Sbjct: 286 ASFALSSLIAEKEDLQKLAFEGNAIDKLCNHLQKGSLQAKRFQGILLALADLCSKLENCR 345

Query: 243 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD 302
           SR L+LQV+  V+DAL HDS +VR+AAC+CLRSVSRS+K                  LL 
Sbjct: 346 SRFLALQVMNSVIDALTHDSGEVRAAACICLRSVSRSVK------------------LLS 387

Query: 303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 362
           DTST+VQVAALGAISNIVVDFTTR+S F++ GGVK LVQLSKSMD TIRLN++  LRNL+
Sbjct: 388 DTSTSVQVAALGAISNIVVDFTTRKSIFMQCGGVKQLVQLSKSMDPTIRLNSVWGLRNLM 447

Query: 363 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGII 422
           FLA+++CKE IF+ELTASLLASLICDPEPSVQ QAL LV NLVDG INSVEY+F ED II
Sbjct: 448 FLADNRCKEGIFLELTASLLASLICDPEPSVQVQALGLVCNLVDGCINSVEYVFVEDSII 507

Query: 423 LDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS 482
           L AVG+QL+   KAE+ IQGMYVL NVATG E HKEAVM QL  +A N  Q  IIKFLQS
Sbjct: 508 LQAVGKQLQSTLKAEVGIQGMYVLSNVATGNEFHKEAVMHQLFPQAGNSTQPIIIKFLQS 567

Query: 483 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE 542
           NDSRLRTAAVW VLNLT   S G+ GR VKL  AGI+S +KNM NDPCLDVKLRV+T L 
Sbjct: 568 NDSRLRTAAVWTVLNLTFPGSLGAYGRFVKLCSAGILSQIKNMANDPCLDVKLRVRTVLG 627

Query: 543 QFNSFDD 549
           Q  +F D
Sbjct: 628 QSLTFGD 634

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442531|ref|XP_004139035.1| PREDICTED: armadillo repeat-containing protein 8-like [Cucumis sativus] gi|449476065|ref|XP_004154630.1| PREDICTED: armadillo repeat-containing protein 8-like [Cucumis sativus]

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/543 (66%), Positives = 445/543 (81%)

Query: 9   EVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSL 68
           +VVDAGARSL+MIYQSK+APK+DFLQ+EN +FLLSLLN+++ENV+GLGASII HSC+T  
Sbjct: 111 KVVDAGARSLRMIYQSKLAPKHDFLQQENTKFLLSLLNSQNENVTGLGASIIVHSCETIA 170

Query: 69  EQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE 128
           EQK L D GVL++L  LL GSL QRDASLESIATIFKNN E +++F+ P     L+ IIE
Sbjct: 171 EQKALHDGGVLEKLIDLLDGSLSQRDASLESIATIFKNNVEAIARFMQPGREDCLNYIIE 230

Query: 129 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFS 188
           ++KDR  +TRLLA +CLIVIRN+SPCY QD+GIK KLI++LLELLD P +VGDEA F FS
Sbjct: 231 LLKDRNPKTRLLACVCLIVIRNSSPCYFQDIGIKMKLIHSLLELLDSPDQVGDEAPFVFS 290

Query: 189 SLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL 248
           +LIAEKE++QKLAFE N +DKLYNHLQK  L PRRF+G+LLA + +CSKLE CRSR LSL
Sbjct: 291 TLIAEKEELQKLAFEANAIDKLYNHLQKDQLSPRRFQGMLLAFSHLCSKLESCRSRFLSL 350

Query: 249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 308
           QV+ +V+DA+ H+SSD+R AAC CLRSVSRSIKNLSAG FMNE +V+P+VRLL D    V
Sbjct: 351 QVMNIVIDAIKHESSDIRIAACTCLRSVSRSIKNLSAGYFMNEAVVLPIVRLLHDPCNDV 410

Query: 309 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 368
           Q+AALGAISNIVV+F+T+RS FI  GGVK LV+LSKSMD  IRLNAL ALRNL+FL    
Sbjct: 411 QLAALGAISNIVVEFSTKRSIFIGCGGVKELVRLSKSMDLEIRLNALWALRNLMFLTNIM 470

Query: 369 CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGR 428
           CKE IFMELTASLLASL+CDPEPS+QE A+ALVRNL+DG  +S+EY+FAED I+L+ +G+
Sbjct: 471 CKEAIFMELTASLLASLVCDPEPSIQEHAMALVRNLIDGCEDSIEYVFAEDAIVLNTIGQ 530

Query: 429 QLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLR 488
           QL+  S  EI +QGMYVL NVA+G E HKE VM QL  R ++  +S ++KFLQS++S+LR
Sbjct: 531 QLQNISTDEIGVQGMYVLCNVASGNEFHKEGVMKQLFPRGDDVTRSFVVKFLQSDNSQLR 590

Query: 489 TAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 548
            A +WA++NLT  SSP +  R+ KL +AGIVS +KNMVNDPCLDVKLRV+T L Q  +F 
Sbjct: 591 IAVIWAIINLTLPSSPRALDRVTKLRNAGIVSQIKNMVNDPCLDVKLRVRTVLGQLIAFG 650

Query: 549 DSL 551
           D +
Sbjct: 651 DGI 653

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499477|ref|XP_003518566.1| PREDICTED: armadillo repeat-containing protein 8-like [Glycine max]

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/541 (66%), Positives = 443/541 (81%)

Query: 9   EVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSL 68
           +VVDA ARSL+MIYQS +APKYDF +E++M+FLLSLL + +EN++GLGASI+ HSC+   
Sbjct: 111 KVVDAAARSLRMIYQSNLAPKYDFFKEQDMQFLLSLLKSGNENLTGLGASIVIHSCEKRD 170

Query: 69  EQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE 128
           EQ +L  AG L+ L SLL GSL QRD+SLES+A I KNNPEVV +FV    GR LS +IE
Sbjct: 171 EQNMLCCAGALETLISLLDGSLSQRDSSLESLAAILKNNPEVVYKFVDLQNGRVLSSVIE 230

Query: 129 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFS 188
           + KDR++RTRLLA LCLI ++N+S CYLQD+GIK KLI+ LLELLD+ G+VGD ASFAFS
Sbjct: 231 LTKDRYSRTRLLACLCLICVKNSSSCYLQDIGIKAKLIHILLELLDESGQVGDSASFAFS 290

Query: 189 SLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL 248
           SL+AEKED+QKLAFE N +DK  +HLQ  +LHP+R EGI LALAD+CSKLECCRS+ LSL
Sbjct: 291 SLVAEKEDLQKLAFEANAIDKFNSHLQNCALHPKRLEGIFLALADLCSKLECCRSKFLSL 350

Query: 249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 308
           QVL ++VD+L HD ++VR+AAC+CL+SVSRSIKNLSAG FMNE I+ PLVRLL D ST+V
Sbjct: 351 QVLNILVDSLTHDDANVRTAACICLKSVSRSIKNLSAGYFMNERIIAPLVRLLSDLSTSV 410

Query: 309 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 368
           QVAALGAISNIV+DFT ++STF+  GGVK L+QL+KSMDS++RLNA+ ALRN++FLA+  
Sbjct: 411 QVAALGAISNIVIDFTPQKSTFMECGGVKELIQLTKSMDSSLRLNAVLALRNMVFLADKM 470

Query: 369 CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGR 428
           CKE IF ELT S +ASLICDPEPSVQEQALALV N VDG I+ VEY FAEDGIILDAV R
Sbjct: 471 CKEGIFKELTVSSVASLICDPEPSVQEQALALVCNFVDGCIDCVEYAFAEDGIILDAVAR 530

Query: 429 QLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLR 488
           QL+ +SK EI IQGMY+L N+A+G ESH+EA+M  L  +AEN + S   +FLQSNDS LR
Sbjct: 531 QLKKSSKIEIGIQGMYLLSNIASGNESHREAIMQLLFSKAENVSHSFFYQFLQSNDSCLR 590

Query: 489 TAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 548
           T+AVW ++NLT  +SPG  GR+VKL + GIVS +K MVNDPC+DVKLR + AL Q  +F 
Sbjct: 591 TSAVWVIVNLTFPASPGVFGRVVKLRNVGIVSQIKKMVNDPCMDVKLRARQALGQIITFG 650

Query: 549 D 549
           D
Sbjct: 651 D 651

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569585|ref|XP_003552979.1| PREDICTED: armadillo repeat-containing protein 8-like [Glycine max]

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/542 (68%), Positives = 440/542 (81%)

Query: 9   EVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSL 68
           +VVDA ARSL+MIYQS +APKYDF QEENM+FLLSLL +E+EN++GLGA I+ HSCKT  
Sbjct: 105 KVVDAAARSLRMIYQSMLAPKYDFFQEENMQFLLSLLKSENENLTGLGAGIVIHSCKTIG 164

Query: 69  EQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE 128
           EQ +L  AGVL++LTSLL GSL QRDASLES+A I ++NP  VS+FV   +GR L  + E
Sbjct: 165 EQNILCHAGVLEKLTSLLEGSLSQRDASLESLAAIIRDNPVSVSEFVELHSGRALHSVTE 224

Query: 129 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFS 188
           + KDR+ RTRLLA LCLI ++N+S CYLQDVGIKTKL+  LLELLDD G+VGDEASFAFS
Sbjct: 225 LTKDRYPRTRLLACLCLISVKNSSTCYLQDVGIKTKLVYILLELLDDSGQVGDEASFAFS 284

Query: 189 SLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL 248
            LIAEKED+QKLAFE N ++K    LQK  +HP+R EG+ LALAD+CSKLECCRS  LSL
Sbjct: 285 RLIAEKEDLQKLAFEANAINKFNCLLQKRPVHPKRLEGVFLALADLCSKLECCRSSFLSL 344

Query: 249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 308
           QVL LVVDAL H+ + VR+AAC+CLRSVSRSIKNLSAG FMNE +V PLV+LL D ST+V
Sbjct: 345 QVLNLVVDALTHEDASVRTAACICLRSVSRSIKNLSAGRFMNERVVFPLVQLLSDLSTSV 404

Query: 309 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 368
           QVAALGAISNIVVDF   +STFI+ GG+K LVQL+KSMDS++RLNA+ ALRN++FLA+  
Sbjct: 405 QVAALGAISNIVVDFMPHKSTFIQCGGIKELVQLTKSMDSSLRLNAVWALRNMVFLADKI 464

Query: 369 CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGR 428
           CKE IF+ELTAS +ASLICDPEPSVQEQALALVRN VDG + SVE+ FAEDGIILDAVGR
Sbjct: 465 CKEGIFVELTASSMASLICDPEPSVQEQALALVRNFVDGCVYSVEHAFAEDGIILDAVGR 524

Query: 429 QLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLR 488
           QL+ +SK EI IQGMYVL N+A+G E HKEAVM  L  + EN + S   +FLQS+DSRLR
Sbjct: 525 QLQKSSKIEIGIQGMYVLNNIASGNEFHKEAVMQLLFPQDENGSHSFFEQFLQSHDSRLR 584

Query: 489 TAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 548
           TAAVW ++NLT  +SPG+ GR+V L   GIVS +K M ND C+DVKLR + AL Q  +F 
Sbjct: 585 TAAVWVIVNLTFPASPGAFGRIVNLRSFGIVSRIKKMSNDSCMDVKLRARLALGQILTFG 644

Query: 549 DS 550
           DS
Sbjct: 645 DS 646

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544884|ref|XP_002513503.1| conserved hypothetical protein [Ricinus communis] gi|223547411|gb|EEF48906.1| conserved hypothetical protein [Ricinus communis]

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/543 (70%), Positives = 455/543 (83%)

Query: 9   EVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSL 68
           +VV+AGARSL+MIYQSK+ PKY+FLQE+ MEFL+SLLN+ESENV+GLGA+II+HSC+TS 
Sbjct: 132 KVVNAGARSLRMIYQSKLTPKYEFLQEKRMEFLISLLNSESENVTGLGATIITHSCETSA 191

Query: 69  EQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE 128
           EQ  L DAGVLKRL SLL GSL QRDASLES+A +F+NNP+V+S+ +  + GR L+ II 
Sbjct: 192 EQIALCDAGVLKRLLSLLEGSLSQRDASLESLAAVFRNNPDVISESLREENGRALTSIIG 251

Query: 129 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFS 188
           +  DR+ RTRLLA +CLIVI N+SPCYLQD+ IKTKLI+ LLELLDD G+VGDEA F FS
Sbjct: 252 LTNDRYPRTRLLACMCLIVIMNSSPCYLQDISIKTKLIHLLLELLDDHGQVGDEAPFVFS 311

Query: 189 SLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL 248
           SLI EKED+Q+LAFE N +DK +NHL+   LHP+RF+GILLALAD+CSKLE CRSR LSL
Sbjct: 312 SLIMEKEDLQQLAFEANALDKFFNHLKNSQLHPKRFQGILLALADLCSKLETCRSRFLSL 371

Query: 249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 308
           +VLK V DAL HDS+DVR AAC+C+RSV+RSIKNL AG FMNE +VIPLV LLDD S  V
Sbjct: 372 EVLKSVADALDHDSNDVRIAACICIRSVTRSIKNLCAGYFMNEVLVIPLVWLLDDPSVTV 431

Query: 309 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 368
           QVAAL AISNI+VDFTTR+STF+R GGVK L+ LSKSMDS +RLNAL AL+N++FLA+++
Sbjct: 432 QVAALSAISNILVDFTTRKSTFVRCGGVKQLIYLSKSMDSAVRLNALCALKNMVFLADNE 491

Query: 369 CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGR 428
            KE  FME+TASLLAS ICD +P VQEQALALVRNLVDG I+ ++Y FAE+GIILDAVGR
Sbjct: 492 FKERTFMEITASLLASFICDHDPFVQEQALALVRNLVDGCISCLDYAFAENGIILDAVGR 551

Query: 429 QLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLR 488
           +L  ASKAEI IQGMYVL NVA+G E HKEAVM++LL + + + QS I+KFLQSNDSRLR
Sbjct: 552 ELTNASKAEIGIQGMYVLANVASGNEFHKEAVMNKLLPQVDKETQSFIVKFLQSNDSRLR 611

Query: 489 TAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 548
           TAAVWAV+NLT  SSPG+  RLVKL  AGIV  ++NMVND CLDVKLR++T L Q  +F 
Sbjct: 612 TAAVWAVVNLTFPSSPGAFNRLVKLRSAGIVPQIRNMVNDSCLDVKLRIRTVLSQVITFG 671

Query: 549 DSL 551
           D L
Sbjct: 672 DGL 674

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524425|ref|XP_003530829.1| PREDICTED: armadillo repeat-containing protein 8-like [Glycine max]

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/549 (67%), Positives = 441/549 (80%), Gaps = 1/549 (0%)

Query: 3   LLKSYME-VVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIIS 61
           LL ++ E VVDA ARSL+MIYQS +APKYDF QEE M+FLLSLL +E+EN++GLGA I+ 
Sbjct: 124 LLSAHDEKVVDAAARSLRMIYQSTLAPKYDFFQEETMQFLLSLLESENENLTGLGAGIVI 183

Query: 62  HSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGR 121
           HSCKT  EQ +L  AGVL++LTSLL  SL QRDASLES+A I ++NP  VS+FV    GR
Sbjct: 184 HSCKTIGEQTILCHAGVLEKLTSLLDSSLSQRDASLESLAAIIRDNPAAVSEFVELHGGR 243

Query: 122 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGD 181
            L  + E+ KDR+ RTRLLA LCLI ++N+S CYLQD+GIKTKL+  LLELLDD G+VGD
Sbjct: 244 ALHSVAELTKDRYPRTRLLACLCLISVKNSSTCYLQDIGIKTKLVYILLELLDDSGQVGD 303

Query: 182 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 241
           EASFAFSSLIAEKED+QKLAFE N ++K    LQK  + P+R EG+ LALAD+CSKLECC
Sbjct: 304 EASFAFSSLIAEKEDLQKLAFEANAINKFNCLLQKHPVQPKRLEGVFLALADLCSKLECC 363

Query: 242 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL 301
           RS  LSLQVL LVVDAL H+ + VR+AAC+CLRSVSRSIKNLSAG FMNE +V PLV+LL
Sbjct: 364 RSSFLSLQVLNLVVDALTHEDASVRTAACICLRSVSRSIKNLSAGRFMNERVVCPLVQLL 423

Query: 302 DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL 361
            D ST+VQVAALGAISNIVVDF   +STFI  GG+K LVQL+KSMDS++RLNA+ ALRN+
Sbjct: 424 SDLSTSVQVAALGAISNIVVDFMPHKSTFIECGGIKELVQLTKSMDSSLRLNAVWALRNM 483

Query: 362 IFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI 421
           +FLA+  CKE IF+ELTAS +ASLICDPEPSVQEQALALVRN VDG + SVE+ FAEDGI
Sbjct: 484 VFLADKICKEGIFVELTASSMASLICDPEPSVQEQALALVRNFVDGCVYSVEHAFAEDGI 543

Query: 422 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ 481
           ILDAVGRQL+ ++K EI IQGMYVL N+A+G E HKEAVM  L  + EN + S   +FLQ
Sbjct: 544 ILDAVGRQLKKSTKIEIGIQGMYVLSNIASGNEFHKEAVMQLLFPQDENVSHSFFEQFLQ 603

Query: 482 SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTAL 541
           S+DSRLRTAAVW V+NLT  ++PG+ GR+V L   GIVS +K MVND C+DVKLR + AL
Sbjct: 604 SHDSRLRTAAVWVVVNLTFPANPGAFGRIVNLRSFGIVSRIKKMVNDSCMDVKLRARLAL 663

Query: 542 EQFNSFDDS 550
            Q  +F DS
Sbjct: 664 GQILTFGDS 672

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223823|ref|NP_175546.1| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gi|20260482|gb|AAM13139.1| unknown protein [Arabidopsis thaliana] gi|30725506|gb|AAP37775.1| At1g51350 [Arabidopsis thaliana] gi|332194533|gb|AEE32654.1| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/543 (58%), Positives = 428/543 (78%), Gaps = 1/543 (0%)

Query: 9   EVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSL 68
           +VVDAGARSL+MI+QS  APKYDFLQE+NMEFL SLLN+E+ENVSGLGASII+H+C TS+
Sbjct: 123 KVVDAGARSLRMIFQSNQAPKYDFLQEKNMEFLFSLLNSENENVSGLGASIIAHACGTSV 182

Query: 69  EQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE 128
           EQ++L +AGVL++L  LL GSL QR+A LES+AT+ KNNPE VS FVG ++G+  + + E
Sbjct: 183 EQRVLCEAGVLEKLVILLDGSLSQREACLESLATVLKNNPEAVSDFVGLESGKYFNSVTE 242

Query: 129 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFS 188
           + KDR+ RTRLL+ LCL+VI N SP Y  ++G K+ LI  LLELL+DPG+ GD+A+   S
Sbjct: 243 LTKDRYPRTRLLSCLCLVVIYNTSPSYFINMGTKSSLITTLLELLNDPGQSGDDAALGLS 302

Query: 189 SLIAEKEDMQKLAFEVNGVDKLYNHLQKGS-LHPRRFEGILLALADMCSKLECCRSRCLS 247
            LIAEKED+Q+LA+E + +  +   L+ GS L  +R +G+ L+LA++CSKLE CR   LS
Sbjct: 303 CLIAEKEDLQQLAYEADAIKNIVEILKTGSELQSKRLQGLFLSLAELCSKLEDCRCSFLS 362

Query: 248 LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA 307
           LQVL L+ DAL H  +DVR+AAC+C R+ +RS+K+LSAG F ++ +++PLV+LL D S++
Sbjct: 363 LQVLDLLTDALRHKDADVRAAACICFRNAARSVKSLSAGRFNSDHVMLPLVQLLHDPSSS 422

Query: 308 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED 367
           VQVA LGA++NIV+DF++ +S+FI  GG+K L +LSKSMD   R +ALRALRNL+FLA+ 
Sbjct: 423 VQVAVLGALNNIVMDFSSPKSSFIEYGGIKQLTELSKSMDPNTRCSALRALRNLMFLADI 482

Query: 368 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVG 427
           K KE  + ++ A  LA LI DPEP VQEQALAL+RNLVDG I+S+E++F EDG+ILD VG
Sbjct: 483 KRKELFYSDVKAQGLACLISDPEPPVQEQALALLRNLVDGCISSIEFVFDEDGLILDTVG 542

Query: 428 RQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL 487
           RQLR A +A++ IQGMYVL NVA+G E HKEAVM+QL  +A+  +++ ++KFLQS++S+L
Sbjct: 543 RQLRKAPQAQMAIQGMYVLTNVASGTELHKEAVMEQLFPQAKAGSENFMLKFLQSDESQL 602

Query: 488 RTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547
           R+AAVW ++NL   SSPG+  R VKL +AGI+  +KNMVND CLDVK+R++T L Q  SF
Sbjct: 603 RSAAVWTIINLISPSSPGAFDRHVKLRNAGIIPQLKNMVNDACLDVKIRIRTVLGQSMSF 662

Query: 548 DDS 550
            D+
Sbjct: 663 GDN 665

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847504|ref|XP_002891633.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297337475|gb|EFH67892.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/543 (58%), Positives = 427/543 (78%), Gaps = 1/543 (0%)

Query: 9   EVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSL 68
           +VVDAGARSL+MI+QS  APKYDFLQE+NMEFL SLLN+E+ENVSGLGASII+H+C TS+
Sbjct: 123 KVVDAGARSLRMIFQSNQAPKYDFLQEKNMEFLFSLLNSENENVSGLGASIIAHACGTSV 182

Query: 69  EQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE 128
           EQ++L +AGVL++L  LL GS  QR+A LES+AT+ KNNPE VS FVG ++G+  + + E
Sbjct: 183 EQRVLCEAGVLEKLVILLDGSFSQREACLESLATVLKNNPEAVSDFVGLESGKYFNSVTE 242

Query: 129 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFS 188
           + KDR+ RTRLL+ LCL+VI N SP Y  ++G K+ LI  LLELL+DPG+ GD+A+   S
Sbjct: 243 LTKDRYPRTRLLSCLCLVVIYNTSPSYFVNMGTKSSLITTLLELLNDPGQSGDDAALGLS 302

Query: 189 SLIAEKEDMQKLAFEVNGVDKLYNHLQKGS-LHPRRFEGILLALADMCSKLECCRSRCLS 247
            LIAEKED+Q+LA+E + +  + + L+ GS L PRR +G+ L+LA++CSKLE CR   LS
Sbjct: 303 CLIAEKEDLQQLAYEADAIKNIVDILKTGSELQPRRLQGLFLSLAELCSKLEDCRCSFLS 362

Query: 248 LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA 307
           LQVL L+ +AL H  +DVR+AAC+C R+ ++S+K+LSAG F ++  ++PLV+LL D S++
Sbjct: 363 LQVLDLLTNALRHKDADVRAAACICFRNAAQSVKSLSAGRFNSDHAMLPLVQLLHDPSSS 422

Query: 308 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED 367
           VQVA LGA+SNIV+DF++ +S+FI  GG+K L++LSKSMD   R +ALRALRNL+FLA++
Sbjct: 423 VQVAVLGALSNIVLDFSSPKSSFIEYGGIKQLIELSKSMDPIARCSALRALRNLMFLADN 482

Query: 368 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVG 427
           K KE  + ++ A   A LI DPEP VQEQALAL+RNLVDG I+S+E++F EDG+ILD VG
Sbjct: 483 KRKELFYSDVKAQGFACLISDPEPPVQEQALALLRNLVDGCISSIEFVFDEDGLILDTVG 542

Query: 428 RQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL 487
           RQLR A +A++ IQGMYVL NVA+G E HKEAVM QL  +A+ ++++ ++ FLQS++S+L
Sbjct: 543 RQLRKAPQAQMAIQGMYVLTNVASGTELHKEAVMQQLFPQAKAESENFMLNFLQSDESQL 602

Query: 488 RTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547
           R+A VW ++NL   SSPG+  R VKL +AG++  +KNMVND CLDVK+R++T L Q  SF
Sbjct: 603 RSATVWTIINLISPSSPGAFDRHVKLRNAGVIPQLKNMVNDACLDVKIRIRTVLGQSMSF 662

Query: 548 DDS 550
            D+
Sbjct: 663 GDN 665

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	552
TAIR|locus:2008246	666	AT1G51350 "AT1G51350" [Arabido	0.981	0.813	0.534	5.5e-148
DICTYBASE|DDB_G0270626	702	armc8 "armadillo repeat-contai	0.855	0.672	0.295	3.5e-44
MGI|MGI:1921375	673	Armc8 "armadillo repeat contai	0.619	0.508	0.260	9.8e-25
UNIPROTKB|F1SL67	289	LOC100738777 "Uncharacterized	0.505	0.965	0.277	2.8e-22
ZFIN|ZDB-GENE-061027-88	674	armc8 "armadillo repeat contai	0.543	0.445	0.285	5.2e-21
POMBASE|SPAC26H5.04	789	SPAC26H5.04 "vacuolar import a	0.432	0.302	0.265	1.2e-15
ASPGD|ASPL0000033305	993	AN5157 [Emericella nidulans (t	0.135	0.075	0.337	7.6e-09
UNIPROTKB|G4N632	1062	MGG_08557 "Armadillo repeat pr	0.251	0.130	0.244	1.4e-07
WB|WBGene00002073	531	ima-2 [Caenorhabditis elegans	0.400	0.416	0.259	2.2e-06
UNIPROTKB|P91276	531	ima-2 "Importin subunit alpha-	0.400	0.416	0.259	2.2e-06

TAIR|locus:2008246 AT1G51350 "AT1G51350" [Arabidopsis thaliana (taxid:3702)]

 Score = 1445 (513.7 bits), Expect = 5.5e-148, P = 5.5e-148
 Identities = 290/543 (53%), Positives = 394/543 (72%)

Query:     9 EVVDAGARSLKMIYQSKMAPKYDFLQXXXXXXXXXXXXXXXXXXXXXGASIISHSCKTSL 68
             +VVDAGARSL+MI+QS  APKYDFLQ                     GASII+H+C TS+
Sbjct:   123 KVVDAGARSLRMIFQSNQAPKYDFLQEKNMEFLFSLLNSENENVSGLGASIIAHACGTSV 182

Query:    69 EQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE 128
             EQ++L +AGVL++L  LL GSL QR+A LES+AT+ KNNPE VS FVG ++G+  + + E
Sbjct:   183 EQRVLCEAGVLEKLVILLDGSLSQREACLESLATVLKNNPEAVSDFVGLESGKYFNSVTE 242

Query:   129 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFS 188
             + KDR+ RTRLL+ LCL+VI N SP Y  ++G K+ LI  LLELL+DPG+ GD+A+   S
Sbjct:   243 LTKDRYPRTRLLSCLCLVVIYNTSPSYFINMGTKSSLITTLLELLNDPGQSGDDAALGLS 302

Query:   189 SLIAEKEDMQKLAFEVNGVDKLYNHLQKGS-LHPRRFEGILLALADMCSKLECCRSRCLS 247
              LIAEKED+Q+LA+E + +  +   L+ GS L  +R +G+ L+LA++CSKLE CR   LS
Sbjct:   303 CLIAEKEDLQQLAYEADAIKNIVEILKTGSELQSKRLQGLFLSLAELCSKLEDCRCSFLS 362

Query:   248 LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA 307
             LQVL L+ DAL H  +DVR+AAC+C R+ +RS+K+LSAG F ++ +++PLV+LL D S++
Sbjct:   363 LQVLDLLTDALRHKDADVRAAACICFRNAARSVKSLSAGRFNSDHVMLPLVQLLHDPSSS 422

Query:   308 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXXXXXXXXXXXXED 367
             VQVA LGA++NIV+DF++ +S+FI  GG+K L +LSKSMD                  + 
Sbjct:   423 VQVAVLGALNNIVMDFSSPKSSFIEYGGIKQLTELSKSMDPNTRCSALRALRNLMFLADI 482

Query:   368 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVG 427
             K KE  + ++ A  LA LI DPEP VQEQALAL+RNLVDG I+S+E++F EDG+ILD VG
Sbjct:   483 KRKELFYSDVKAQGLACLISDPEPPVQEQALALLRNLVDGCISSIEFVFDEDGLILDTVG 542

Query:   428 RQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL 487
             RQLR A +A++ IQGMYVL NVA+G E HKEAVM+QL  +A+  +++ ++KFLQS++S+L
Sbjct:   543 RQLRKAPQAQMAIQGMYVLTNVASGTELHKEAVMEQLFPQAKAGSENFMLKFLQSDESQL 602

Query:   488 RTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 547
             R+AAVW ++NL   SSPG+  R VKL +AGI+  +KNMVND CLDVK+R++T L Q  SF
Sbjct:   603 RSAAVWTIINLISPSSPGAFDRHVKLRNAGIIPQLKNMVNDACLDVKIRIRTVLGQSMSF 662

Query:   548 DDS 550
              D+
Sbjct:   663 GDN 665

GO:0008150 "biological_process" evidence=ND

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

DICTYBASE|DDB_G0270626 armc8 "armadillo repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 453 (164.5 bits), Expect = 3.5e-44, Sum P(2) = 3.5e-44
 Identities = 147/498 (29%), Positives = 252/498 (50%)

Query:    57 ASIISHSCKTSL--EQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVS 112
             +S  S+S   SL   Q  +   G L  + S+L    S IQ +A L  I+ + ++N  + S
Sbjct:   215 SSSSSNSINHSLLQYQNFVHIHGGLNSVMSILASPRSKIQ-EACLYVISWLTRDNVPL-S 272

Query:   113 QFVGPDTGRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLE 171
              F+  D  R L  II + K ++  + +LLA+ CL    N S        +K  ++  ++ 
Sbjct:   273 TFIVNDERRILDIIIYLFKKNKSPKIKLLATNCLCNF-NQSKTLPITCSLKN-ILPIIIR 330

Query:   172 LLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLAL 231
             L+ +   V +EA    + L+A+ ED+Q++A E   + +L   L+  +   R  E  L A+
Sbjct:   331 LMSEEESVKEEAPMVLARLVADNEDLQRIASEAEAISRLSIFLKDSNSSERLKENSLSAI 390

Query:   232 ADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNE 291
             A +CS  E  R + +  +++  ++ +L   +  +R+AAC C +S+SRSIK L    F + 
Sbjct:   391 AVLCSSREDSRKQVVDAKIIPQIISSLNSSNYAIRAAACNCTKSLSRSIKQLRTSLF-DC 449

Query:   292 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTX 350
             TI  PL++LLDD S  V+V+A   + N+V+DF+  +   +  G +  LV L++ S D   
Sbjct:   450 TIATPLLKLLDDQSLEVRVSASATLCNLVLDFSPMKQAIMDNGIIVKLVDLTQDSNDFKI 509

Query:   351 XXXXXXXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV-DGRI 409
                            E   KE++  EL    L  LI D +PS+ EQALA++RNL      
Sbjct:   510 RLNCIWALKNLLYMAEPSLKEQVMKELGYQRLIELIKDTDPSISEQALAVLRNLAFKDND 569

Query:   410 NSVEYIFAEDGIILDAVGRQLRIASKA-EIEIQGMYVLGNVATGKESHKEAVMDQLLLRA 468
             + +  +   D ++      + R+AS   EI  Q ++V+ N+A G E  + +VM+  ++  
Sbjct:   570 HLISELHFHDQLVPTI---ENRLASNIPEIIKQTLFVICNIA-GNEKIRSSVMNSSIV-- 623

Query:   469 ENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC-SSSPGSSGRLVKLHDAGIVSHVKNMVN 527
              N+    +I F++     +R A+VW V N+     +  S+ R++K  + G    ++ + +
Sbjct:   624 -NR----LIHFMEHKHCEIRIASVWCVCNIIGPDENSTSASRVLKFKELGYQKKLEMLAD 678

Query:   528 -DPCLDVKLRVKTALEQF 544
              D  ++VK RVKTAL  F
Sbjct:   679 HDSNIEVKDRVKTALTLF 696

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1921375 Armc8 "armadillo repeat containing 8" [Mus musculus (taxid:10090)]

 Score = 269 (99.8 bits), Expect = 9.8e-25, Sum P(2) = 9.8e-25
 Identities = 94/361 (26%), Positives = 165/361 (45%)

Query:   190 LIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLAL-ADMCSKLECCRSRCLSL 248
             LIA   D  K    V+ +  +   L     H          L A + +  E  R + +  
Sbjct:   324 LIAMLADYFKYPSSVSAITDI-KRLDHDLKHAHELRQAAFKLYASLGANDEDIRKKIIET 382

Query:   249 Q-VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA 307
             + ++  +V   +  S  VR AA  CL S+SRS++ L   SF +  +  PL+++L +    
Sbjct:   383 ETMMDRIVTGSSESSVKVRLAAVRCLHSLSRSVQQLRT-SFQDHAVWKPLMKVLQNAPDE 441

Query:   308 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXXXXXXXXXXXXED 367
             + V A   + N++++F+  +   +  G V+LL  L++S +                  E 
Sbjct:   442 ILVVASSMLCNLLLEFSPSKEPILESGAVELLCGLTQSENPALRVNGIWALMNMAFQAEQ 501

Query:   368 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI-ILDAV 426
             K K +I   L+   L  L+ D + +V  + L L+RNL+  R + ++ I +  G  I+ AV
Sbjct:   502 KIKADILRSLSTEQLFRLLSDSDMNVLMKTLGLLRNLLSTRPH-IDKIMSTHGKQIMQAV 560

Query:   427 GRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVM--DQLLLRAENKAQSCIIKFLQSND 484
                L      E++ Q + +L N+A G  + KE +M  D +L +         IK+   + 
Sbjct:   561 TLILEGEHSIEVKEQTLCILANIADGTTA-KELIMTNDDILQK---------IKYYMGHS 610

Query:   485 S-RLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQ 543
               +L+ AA++ + NLT +   GS  R  KL D GIV  +  +      ++  + KTAL+Q
Sbjct:   611 HVKLQLAAMFCISNLTWNEEEGSQERQDKLRDMGIVDILHKLSQSADSNLCDKAKTALQQ 670

Query:   544 F 544
             +
Sbjct:   671 Y 671

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1SL67 LOC100738777 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 265 (98.3 bits), Expect = 2.8e-22, P = 2.8e-22
 Identities = 82/295 (27%), Positives = 143/295 (48%)

Query:   254 VVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAAL 313
             +V  L+  S  VR AA  CL S+SRS++ L   SF +  +  PL+++L +    + V A 
Sbjct:     5 IVTGLSESSVKVRLAAVRCLHSLSRSVQQLRT-SFQDHAVWKPLMKVLQNAPDEILVVAS 63

Query:   314 GAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXXXXXXXXXXXXEDKCKEEI 373
               + N++++F+  +   +  G V+LL  L++S +                  E K K +I
Sbjct:    64 SMLCNLLLEFSPSKEPILESGAVELLCGLTQSENPALRVNGIWALMNMAFQAEQKIKADI 123

Query:   374 FMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI-ILDAVGRQLRI 432
                L+   L  L+ D + +V  + L L+RNL+  R + ++ I +  G  I+ AV   L  
Sbjct:   124 LRSLSTEQLFRLLSDSDLNVLMKTLGLLRNLLSTRPH-IDKIMSTHGKQIMQAVTLILEG 182

Query:   433 ASKAEIEIQGMYVLGNVATGKESHKEAVM--DQLLLRAENKAQSCIIKFLQSNDS-RLRT 489
                 E++ Q + +L N+A G  + KE +M  D +L +         IK+   +   +L+ 
Sbjct:   183 EHNIEVKEQTLCILANIADGTTA-KELIMTNDDILQK---------IKYYMGHSHVKLQL 232

Query:   490 AAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 544
             AA++ + NL  +   GS  R  KL D GIV  +  +   P  ++  + K AL+Q+
Sbjct:   233 AAMFCISNLIWNEEEGSQERQDKLRDMGIVDILHKLSQSPDSNLCDKAKMALQQY 287

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

ZFIN|ZDB-GENE-061027-88 armc8 "armadillo repeat containing 8" [Danio rerio (taxid:7955)]

 Score = 276 (102.2 bits), Expect = 5.2e-21, P = 5.2e-21
 Identities = 91/319 (28%), Positives = 152/319 (47%)

Query:   232 ADMCSKLECCRSRCLSLQ-VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMN 290
             A + S  E  R +    + ++  +V  L+  S  VR AA  CL S+SRS++ L   SF +
Sbjct:   367 ASLGSNDEDIRKKITETENMMDRIVSGLSESSIKVRLAAVRCLHSLSRSVQQLRT-SFHD 425

Query:   291 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTX 350
               +  PL++LL +    V V A   + N++++F+  +   +  G ++LL  L++S  S  
Sbjct:   426 HAVWKPLMKLLQNAPDEVLVMASSTLCNLLLEFSPSKEPILESGVIELLCSLTQSDSSAL 485

Query:   351 XXXXXXXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN 410
                            + K K EI   L    L  L+ DP+ +V  + L L+RNL+  R +
Sbjct:   486 RVNGIWALMNMAFQADQKVKVEIVRALGTEQLFRLLSDPDTNVLMKTLGLLRNLLSTRPH 545

Query:   411 SVEYIFAEDGI-ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAE 469
              ++ I +  G  I+ AV   L      E++ Q + +L N+A G  + KE +M       +
Sbjct:   546 -IDQIMSSHGKQIMQAVTLILEGEHSIEVKEQTLCILANIADGNTA-KELIMTN-----D 598

Query:   470 NKAQSCIIKFLQSNDS-RLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVS--HVKNMV 526
             +  Q   IK+   + + +L+ AA + + NL  +   GS  R  KL + G V   H     
Sbjct:   599 DMLQK--IKYYMGHSNVKLQLAATFCISNLIWNEEDGSQERQDKLREMGFVDILHKLTQA 656

Query:   527 NDPCL-DVKLRVKTALEQF 544
             +DP L D   R KTA++Q+
Sbjct:   657 SDPNLCD---RAKTAMQQY 672

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPAC26H5.04 SPAC26H5.04 "vacuolar import and degradation protein Vid28 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 229 (85.7 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 65/245 (26%), Positives = 123/245 (50%)

Query:   225 EGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS 284
             E +LLA+A + +  +  R   +  + L ++++AL  +S+ V+ AAC CL S+SRS+  L 
Sbjct:   420 ESVLLAVAALTTSKDEYRKLIVDAKYLPVIINALKINSNSVKKAACECLLSLSRSVYILR 479

Query:   285 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK 344
              G   +  +  PL++LL D  T V+  A  AI N+V+ F+  R  F+    +  L+    
Sbjct:   480 TG-LADADVSEPLIKLLSDPDTRVKSTATSAICNLVLKFSPLREKFLTTNFIDTLISNIS 538

Query:   345 SMDSTXXXXXXXXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 404
             + DS+                ++  + E   ++ AS L  L  D +  VQEQ L ++RN 
Sbjct:   539 TKDSSLRKKTVWVLRHVVFGDDETIQLEPLKKIGASKLVELCNDEDLGVQEQMLQVLRNF 598

Query:   405 VDGRINSVEYIFAEDGIILDAVGRQL--RIASKAEIEIQ-GMYVLGNVATGKESHKEAVM 461
                +  SV+++     + ++ + + L  ++ SK  I I+  +Y+L ++A      +++++
Sbjct:   599 TCQKEESVDFLLKM--VPMELLAKILLEKLESKNPILIEPSIYILVHIAASDGELRDSIL 656

Query:   462 DQLLL 466
              Q  L
Sbjct:   657 RQTKL 661

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0007039 "vacuolar protein catabolic process" evidence=ISO

GO:0034657 "GID complex" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0045721 "negative regulation of gluconeogenesis" evidence=ISO

ASPGD|ASPL0000033305 AN5157 [Emericella nidulans (taxid:162425)]

 Score = 102 (41.0 bits), Expect = 7.6e-09, Sum P(4) = 7.6e-09
 Identities = 28/83 (33%), Positives = 42/83 (50%)

Query:   476 IIKFLQS--NDSR--LRTAAVWAVLNLTCSSS----PGSSGRLVKLHDAGIVSHVKNMVN 527
             +I++L    N S   +R   VW V+NLT         G   R ++L   G++  + ++ +
Sbjct:   911 LIRYLMGYFNHSHRDVRANCVWVVINLTYEDDVHDREGCRKRALELRSIGVLDRLASLEH 970

Query:   528 DPCLDVKLRVKTALEQFNSFDDS 550
             DP LDV+ R KTAL   NS   S
Sbjct:   971 DPDLDVRERTKTALHLVNSLTHS 993

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|G4N632 MGG_08557 "Armadillo repeat protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 115 (45.5 bits), Expect = 1.4e-07, Sum P(5) = 1.4e-07
 Identities = 35/143 (24%), Positives = 64/143 (44%)

Query:   256 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGA 315
             DA   + ++V  AAC  +R ++RS+  +   +  +  +  PL +LL      VQ AA  A
Sbjct:   627 DAQNKNPTEVLIAACHTIRMLARSVAIIRT-TLQDSGVTDPLFKLLRHPDADVQTAATAA 685

Query:   316 ISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXXXXXXXXXXXXEDKCKEEIFM 375
             + N++ DF+  R  F+ LG +K+L   + S   +                  + K+    
Sbjct:   686 VCNLLTDFSPMREKFLDLGIMKVLCDHAHSATPSLRLNALWALKHLISGQRPEMKKTCME 745

Query:   376 ELTASLLASLICDPEPSVQEQAL 398
              L  + L  +I +    +++QAL
Sbjct:   746 VLDPNWLTRIIAE---DIEDQAL 765

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00002073 ima-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 142 (55.0 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 62/239 (25%), Positives = 103/239 (43%)

Query:   250 VLKLVVDALAHDSSDVRSAACMCLRS-VSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 308
             +L+ +V AL+ ++  V+  A   L + VS S +   A   +   + IPL+ L    S  +
Sbjct:   133 LLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAA--VEAGVTIPLIHLSVHQSAQI 190

Query:   309 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXXXXXXXXXXXXEDK 368
                AL A++NI  D +  R   I+  GV+ L+ L + +D                    K
Sbjct:   191 SEQALWAVANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLGDSHVRTIAWAFSNMCRHK 250

Query:   369 CKE---EIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDA 425
                   E+   L+  L+  L+   +  V++ A   V  L DG    +E +  E G++   
Sbjct:   251 NPHAPLEVLRVLSKGLV-KLVQHTDRQVRQDACWAVSYLTDGPDEQIE-LARESGVLPHV 308

Query:   426 VGRQLRIASKAE-IEIQGMYVLGNVATGKESHKEAV-----MDQLLLRAENKAQSCIIK 478
             V        +AE +    +  LGNVATG +S  +AV     +D++L   E    S I+K
Sbjct:   309 VA----FFKEAENLVAPALRTLGNVATGNDSLTQAVIDLGSLDEILPLMEKTRSSSIVK 363

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0051983 "regulation of chromosome segregation" evidence=IMP

GO:0007084 "mitotic nuclear envelope reassembly" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P91276 ima-2 "Importin subunit alpha-2" [Caenorhabditis elegans (taxid:6239)]

 Score = 142 (55.0 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 62/239 (25%), Positives = 103/239 (43%)

Query:   250 VLKLVVDALAHDSSDVRSAACMCLRS-VSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 308
             +L+ +V AL+ ++  V+  A   L + VS S +   A   +   + IPL+ L    S  +
Sbjct:   133 LLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAA--VEAGVTIPLIHLSVHQSAQI 190

Query:   309 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXXXXXXXXXXXXEDK 368
                AL A++NI  D +  R   I+  GV+ L+ L + +D                    K
Sbjct:   191 SEQALWAVANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLGDSHVRTIAWAFSNMCRHK 250

Query:   369 CKE---EIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDA 425
                   E+   L+  L+  L+   +  V++ A   V  L DG    +E +  E G++   
Sbjct:   251 NPHAPLEVLRVLSKGLV-KLVQHTDRQVRQDACWAVSYLTDGPDEQIE-LARESGVLPHV 308

Query:   426 VGRQLRIASKAE-IEIQGMYVLGNVATGKESHKEAV-----MDQLLLRAENKAQSCIIK 478
             V        +AE +    +  LGNVATG +S  +AV     +D++L   E    S I+K
Sbjct:   309 VA----FFKEAENLVAPALRTLGNVATGNDSLTQAVIDLGSLDEILPLMEKTRSSSIVK 363

GO:0008565 "protein transporter activity" evidence=IMP

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005643 "nuclear pore" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024605001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (655 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	552
COG5369	743	COG5369, COG5369, Uncharacterized conserved protei	3e-17
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-14
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-13
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	3e-06
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-06
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-06
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	2e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-04
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	0.002

>gnl|CDD|227663 COG5369, COG5369, Uncharacterized conserved protein [Function unknown]

 Score = 85.0 bits (210), Expect = 3e-17
 Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 7/202 (3%)

Query: 267 SAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR 326
            A  + L+S+SRS+  L  G  ++  IV  L+  L +    ++      I N VV F+  
Sbjct: 407 VAIVLFLKSMSRSVTFLRTG-LLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNL 465

Query: 327 RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI 386
            + F+    + +LV L  S D  ++ N+   LR+L++  +   K +   ++    + S  
Sbjct: 466 GAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYT 525

Query: 387 CDPEPSVQEQALALVRNLV-DGRINS----VEYIFAEDGIILDAVGRQLRIASKAEIEIQ 441
            DP   VQ Q L ++RN   D   N     V         +   +  +    +  EI  +
Sbjct: 526 NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL-E 584

Query: 442 GMYVLGNVATGKESHKEAVMDQ 463
           G Y+L   A   ++    V  Q
Sbjct: 585 GCYILVRNAACDDTLDYIVQSQ 606

Length = 743

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 68.1 bits (167), Expect = 6e-14
 Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 1/113 (0%)

Query: 293 IVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL 352
            +  LV LL  +   VQ  A  A+SN+           +  GG+  LVQL KS D  +  
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 353 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV 405
            AL ALRNL    ED  K  +        L +L+      +Q+ A   + NL 
Sbjct: 68  AALWALRNLAAGPEDN-KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 65.0 bits (159), Expect = 8e-13
 Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 13/119 (10%)

Query: 250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVI------PLVRLLDD 303
            L  +V  L+    +V+  A   L        NLSAG+  N   V+       LV+LL  
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALS-------NLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 304 TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 362
               V  AAL A+ N+       +   +  GGV  LV L  S +  I+ NA  AL NL 
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 35/240 (14%)

Query: 280 IKNLSAGSFMNETIVI-----PL-VRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL 333
           + N+++G+     +V+     PL ++LL  T   V+  A+ A+ NI  D    R   ++ 
Sbjct: 139 LTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQC 198

Query: 334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCK------EEIFMELTASLLASLIC 387
           G ++ L+ L  S    I +     LRN  +   + C+      +   +     +LA LI 
Sbjct: 199 GALEPLLGLLLSSAIHISM-----LRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIY 253

Query: 388 DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDA--VGRQLRIASKAEIEIQ--GM 443
             +P V   A   +  L DG     E I      +LD    GR + + S    +IQ   +
Sbjct: 254 SRDPEVLVDACWAISYLSDG---PNEKI----QAVLDVGIPGRLVELLSHESAKIQTPAL 306

Query: 444 YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSS 503
             +GN+ TG +   + +++   L+A           L S    +R  A W + N+T  ++
Sbjct: 307 RSVGNIVTGSDDQTQVIINCGALKA-------FRSLLSSPKENIRKEACWTISNITAGNT 359

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 330 FIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA-SLLASLICD 388
            I+ GG+  LV L  S D  ++  A  AL NL     D  +    +E      L  L+  
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQA--VVEAGGLPALVQLLKS 60

Query: 389 PEPSVQEQALALVRNLVDGRINSVEYIFAEDGI 421
            +  V + AL  +RNL  G  ++   +    G+
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGV 93

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 228 LLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGS 287
             AL+++ +         +    L  +V  L  +  +V  AA   LR       NL+AG 
Sbjct: 28  AWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALR-------NLAAGP 80

Query: 288 FMNETIVI------PLVRLLDDTSTAVQVAALGAISNIV 320
             N+ IV+       LV LLD ++  +Q  A GA+SN+ 
Sbjct: 81  EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 54/276 (19%), Positives = 101/276 (36%), Gaps = 6/276 (2%)

Query: 169 LLELLDDPGR-VGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGI 227
            ++LL      V ++A +A  ++  + E  +    +   ++ L   L   ++H       
Sbjct: 162 FIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNA 221

Query: 228 LLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGS 287
              L+++C             Q L ++   +     +V   AC  +  +S    N    +
Sbjct: 222 TWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS-DGPNEKIQA 280

Query: 288 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD 347
            ++  I   LV LL   S  +Q  AL ++ NIV     +    I  G +K    L  S  
Sbjct: 281 VLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPK 340

Query: 348 STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 407
             IR  A   + N+     ++ +  I   L    L  L+   E  ++++A   + N   G
Sbjct: 341 ENIRKEACWTISNITAGNTEQIQAVIDANL-IPPLIHLLSSAEYKIKKEACWAISNATSG 399

Query: 408 RINSVEYI--FAEDGIILDAVGRQLRIASKAEIEIQ 441
            +N  + I      G I   +   L +     IE+ 
Sbjct: 400 GLNRPDIIRYLVSQGFI-KPLCDLLDVVDNKIIEVA 434

Length = 526

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 331 IRLGGVKLLVQLSKSMDSTIRLNALRALRNL 361
           I  G V  LVQL  S D  ++  A  AL NL
Sbjct: 9   IEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 331 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 363
           +  GG+  LV+L KS D  +   A  AL NL  
Sbjct: 9   VDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	552
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.97
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.92
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.9
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.78
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.76
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.75
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.74
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.74
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.74
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.73
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.72
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.72
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.71
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.7
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.7
PRK09687	280	putative lyase; Provisional	99.7
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.69
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.69
COG5369	743	Uncharacterized conserved protein [Function unknow	99.69
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.67
PRK09687	280	putative lyase; Provisional	99.65
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.63
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.63
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.63
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.62
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.61
PTZ00429	746	beta-adaptin; Provisional	99.59
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.58
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.54
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.53
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.51
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.5
PTZ00429	746	beta-adaptin; Provisional	99.45
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.42
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.39
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.27
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.26
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.23
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.16
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.16
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.11
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.09
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.08
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.08
KOG1824	1233	consensus TATA-binding protein-interacting protein	99.05
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.98
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.94
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.94
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.93
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.93
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.92
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.91
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.9
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.89
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.88
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.87
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.85
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.84
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.83
TIGR02270	410	conserved hypothetical protein. Members are found	98.83
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.82
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.82
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.78
COG5369	743	Uncharacterized conserved protein [Function unknow	98.77
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.73
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.72
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.71
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.69
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.65
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.62
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.56
TIGR02270	410	conserved hypothetical protein. Members are found	98.56
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.52
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.52
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.52
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.5
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.48
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.48
PF05536	543	Neurochondrin: Neurochondrin	98.44
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.43
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.42
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.39
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.39
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.38
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.37
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	98.35
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.34
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.33
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.3
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.3
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.29
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	98.22
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	98.2
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.16
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.15
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.12
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.11
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.09
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.05
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.04
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.03
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.02
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.01
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.0
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.0
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.99
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	97.99
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.98
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.97
PF05536	543	Neurochondrin: Neurochondrin	97.93
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.92
KOG4646	173	consensus Uncharacterized conserved protein, conta	97.91
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.87
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.87
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.83
KOG0567	289	consensus HEAT repeat-containing protein [General	97.8
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.68
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.66
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.66
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.57
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.55
KOG0567	289	consensus HEAT repeat-containing protein [General	97.52
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.46
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.43
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.41
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.4
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.32
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.28
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.28
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.28
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.28
PF05004	309	IFRD: Interferon-related developmental regulator (	97.25
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.25
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.21
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.21
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.17
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.16
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.14
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.13
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.1
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.09
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.03
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.01
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.93
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.8
PF05004	309	IFRD: Interferon-related developmental regulator (	96.64
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.62
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.57
PRK14707	2710	hypothetical protein; Provisional	96.57
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.5
KOG1243	690	consensus Protein kinase [General function predict	96.45
KOG2025	892	consensus Chromosome condensation complex Condensi	96.4
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.37
KOG0413	1529	consensus Uncharacterized conserved protein relate	96.36
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.35
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.31
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.3
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.29
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.27
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.25
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.21
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.19
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.16
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.11
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.09
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.09
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.07
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.06
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.03
PRK14707	2710	hypothetical protein; Provisional	96.02
KOG0414	1251	consensus Chromosome condensation complex Condensi	95.95
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.91
KOG3036	293	consensus Protein involved in cell differentiation	95.87
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.86
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.8
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.75
KOG4653	982	consensus Uncharacterized conserved protein [Funct	95.69
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	95.36
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.22
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.17
KOG2025	892	consensus Chromosome condensation complex Condensi	95.15
KOG2956	516	consensus CLIP-associating protein [General functi	95.0
COG5116	926	RPN2 26S proteasome regulatory complex component [	94.81
KOG2032	533	consensus Uncharacterized conserved protein [Funct	94.51
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.46
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	94.32
PF08045	257	CDC14: Cell division control protein 14, SIN compo	94.24
COG5098	1128	Chromosome condensation complex Condensin, subunit	94.22
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.19
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	94.07
KOG2137	700	consensus Protein kinase [Signal transduction mech	94.05
KOG2956	516	consensus CLIP-associating protein [General functi	93.95
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.8
PF08045	257	CDC14: Cell division control protein 14, SIN compo	93.68
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	93.45
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	93.41
KOG3036	293	consensus Protein involved in cell differentiation	93.34
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	93.34
COG5656	970	SXM1 Importin, protein involved in nuclear import	93.26
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	93.05
KOG1243	690	consensus Protein kinase [General function predict	92.99
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	92.79
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	92.65
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	92.6
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	92.41
COG5098	1128	Chromosome condensation complex Condensin, subunit	92.25
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	92.03
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	91.7
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	91.36
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	91.35
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	91.04
KOG2933	334	consensus Uncharacterized conserved protein [Funct	90.93
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	90.89
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	90.78
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	90.78
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	90.67
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	90.33
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	90.23
KOG2137	700	consensus Protein kinase [Signal transduction mech	90.07
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	90.03
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	89.87
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	89.81
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	89.36
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	89.33
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	89.28
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	88.88
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	88.61
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	88.48
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	88.16
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	87.57
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	87.56
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	87.56
KOG2933	334	consensus Uncharacterized conserved protein [Funct	87.17
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	86.91
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	86.89
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	86.77
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	86.62
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	86.61
COG5656	970	SXM1 Importin, protein involved in nuclear import	86.36
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	86.25
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	86.07
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	85.84
PF14631	1426	FancD2: Fanconi anaemia protein FancD2 nuclease; P	85.36
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	85.31
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	85.17
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	84.97
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	84.55
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	84.49
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	84.47
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	83.63
cd03561	133	VHS VHS domain family; The VHS domain is present i	83.41
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	83.31
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	83.16
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	82.96
KOG0413	1529	consensus Uncharacterized conserved protein relate	82.9
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	82.5
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	82.39
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	82.25
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	81.41
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	81.1
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	80.47
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	80.41

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=9.9e-48  Score=427.57  Aligned_cols=527  Identities=18%  Similarity=0.170  Sum_probs=439.5

Q ss_pred             CCCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCCh---hhH-HHHHhcCc
Q 008827            3 LLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTS---LEQ-KLLFDAGV   78 (552)
Q Consensus         3 ~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~---~~~-~~l~~~g~   78 (552)
                      |.+.+..+...++.+|.+++..+... ..+...+.+|+|+.+|++.+...++.|+.+|.+++...   +++ ......|+
T Consensus        67 L~sg~~~vk~nAaaaL~nLS~~e~nk-~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~Ga  145 (2102)
T PLN03200         67 LRSGTLGAKVNAAAVLGVLCKEEDLR-VKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGV  145 (2102)
T ss_pred             HcCCCHHHHHHHHHHHHHHhcCHHHH-HHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCC
Confidence            34566677778889999998776555 55567899999999999999999999999999998763   334 44667999


Q ss_pred             hHHHHHhhcCC---H-HHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCC
Q 008827           79 LKRLTSLLGGS---L-IQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC  154 (552)
Q Consensus        79 i~~L~~lL~~~---~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~  154 (552)
                      ||+|+.++++.   + .++..+..+|.+|+...++..+.+.+   .|.++.++.+++++++.+|..|+.+|.+++.+.++
T Consensus       146 Vp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIe---aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee  222 (2102)
T PLN03200        146 VPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLE---AGGVDILVKLLSSGNSDAQANAASLLARLMMAFES  222 (2102)
T ss_pred             hHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHH---cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH
Confidence            99999999962   2 36778889999999888777655553   68999999999999999999999999988876543


Q ss_pred             cchhhhhHHhHHHHHHHhcCC--CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCC-------ChhhHH
Q 008827          155 YLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSL-------HPRRFE  225 (552)
Q Consensus       155 ~~~~~~~~~g~i~~Lv~ll~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~-------~~~~~~  225 (552)
                       ....+++.|++|.|+++|++  +..+|++|+++|.+++++++++++.+++.|++|.|++++..+..       ....++
T Consensus       223 -~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe  301 (2102)
T PLN03200        223 -SISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQE  301 (2102)
T ss_pred             -HHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHH
Confidence             46678899999999999974  34789999999999999999999999999999999998875431       234689


Q ss_pred             HHHHHHHHhhcCChh-----------HH----------------------------------------------------
Q 008827          226 GILLALADMCSKLEC-----------CR----------------------------------------------------  242 (552)
Q Consensus       226 ~a~~aL~~l~~~~~~-----------~~----------------------------------------------------  242 (552)
                      +|+|+|+|+|.+.+.           .|                                                    
T Consensus       302 ~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe  381 (2102)
T PLN03200        302 NAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQE  381 (2102)
T ss_pred             HHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHH
Confidence            999999998874211           00                                                    


Q ss_pred             ----------------HHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCH
Q 008827          243 ----------------SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTST  306 (552)
Q Consensus       243 ----------------~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~  306 (552)
                                      +.+.+.++++.++.++...+.++|..++++|++++.+....++. +.+.|++|.|+++|.++++
T Consensus       382 ~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~a-Ii~~ggIp~LV~LL~s~s~  460 (2102)
T PLN03200        382 RIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEA-LGGREGVQLLISLLGLSSE  460 (2102)
T ss_pred             HHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHH-HHHcCcHHHHHHHHcCCCH
Confidence                            00111234455566666666789999999999999876666666 8899999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhh
Q 008827          307 AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI  386 (552)
Q Consensus       307 ~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll  386 (552)
                      .+|..|+++|+|++.+.+..+..+++.|++|.|+++|.+++..++++|+|+|.|++.+ +++.+..+.+.|.++.|+++|
T Consensus       461 ~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL  539 (2102)
T PLN03200        461 QQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLL  539 (2102)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999999988888888999999999999999999999999999999999884 345566666889999999999


Q ss_pred             cCCChhHHHHHHHHHHHhhcCCc-chHH---------------HHH---------------------hhcCchHHHHHHH
Q 008827          387 CDPEPSVQEQALALVRNLVDGRI-NSVE---------------YIF---------------------AEDGIILDAVGRQ  429 (552)
Q Consensus       387 ~~~~~~v~~~a~~~L~~l~~~~~-~~~~---------------~i~---------------------~~~~~~~~~l~~~  429 (552)
                      ++.+++.++.++++|.|++.+.. +.+.               .++                     ..+  .++.|.++
T Consensus       540 ~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~g--gL~~Lv~L  617 (2102)
T PLN03200        540 KNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAND--ALRTLIQL  617 (2102)
T ss_pred             hCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccc--cHHHHHHH
Confidence            99999999999999999974321 1111               000                     112  57899999


Q ss_pred             hcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHH
Q 008827          430 LRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGR  509 (552)
Q Consensus       430 L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  509 (552)
                      |++ +++++++.|+|+|.|++.+..+.++.++.       .|++++++.+|++++.+++++|+|+|++++.   ++..++
T Consensus       618 L~s-gs~~ikk~Aa~iLsnL~a~~~d~~~avv~-------agaIpPLV~LLss~~~~v~keAA~AL~nL~~---~~~~~q  686 (2102)
T PLN03200        618 LSS-SKEETQEKAASVLADIFSSRQDLCESLAT-------DEIINPCIKLLTNNTEAVATQSARALAALSR---SIKENR  686 (2102)
T ss_pred             HcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHH-------cCCHHHHHHHHhcCChHHHHHHHHHHHHHHh---CCCHHH
Confidence            998 89999999999999999999888888876       7999999999999999999999999999995   466777


Q ss_pred             HHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhcC
Q 008827          510 LVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD  549 (552)
Q Consensus       510 ~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~~  549 (552)
                      +..+.+.|++++|++++++++.++++.|..||.++.+..|
T Consensus       687 ~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e  726 (2102)
T PLN03200        687 KVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE  726 (2102)
T ss_pred             HHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch
Confidence            8888999999999999999999999999999999998765

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.7e-45  Score=409.77  Aligned_cols=516  Identities=16%  Similarity=0.160  Sum_probs=424.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCC-hhhHHHHHhcCchHHHHHhhcC
Q 008827           10 VVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKT-SLEQKLLFDAGVLKRLTSLLGG   88 (552)
Q Consensus        10 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~-~~~~~~l~~~g~i~~L~~lL~~   88 (552)
                      +.+.+..+|.+++..+...+..+++.+++|.++.+|+++++..++.++.++.+++.. .+.+..+.+.|+||.|+++|++
T Consensus       163 L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s  242 (2102)
T PLN03200        163 VEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ  242 (2102)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc
Confidence            445567899999988877755567899999999999999999999999999887755 4568888999999999999975


Q ss_pred             --CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCC---------hhhHHHHHHHHHHHhhhCCC---
Q 008827           89 --SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRF---------ARTRLLASLCLIVIRNASPC---  154 (552)
Q Consensus        89 --~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~---------~~vr~~A~~~L~~l~~~~~~---  154 (552)
                        +..+|+.|..+|++|+.++++.++.+.+   .|+++.++.++.+++         ...+..|+++|.|++.....   
T Consensus       243 g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~---aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~  319 (2102)
T PLN03200        243 GNEVSVRAEAAGALEALSSQSKEAKQAIAD---AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALIL  319 (2102)
T ss_pred             CCChHHHHHHHHHHHHHhcCCHHHHHHHHH---CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHH
Confidence              4589999999999999998888877764   789999999887654         34589999999999874211   


Q ss_pred             -------cchhh--h-hHHhHH-----------------------HHHHHhcCCC-C-chhchHHHHHHHhhcCCHHHHH
Q 008827          155 -------YLQDV--G-IKTKLI-----------------------NNLLELLDDP-G-RVGDEASFAFSSLIAEKEDMQK  199 (552)
Q Consensus       155 -------~~~~~--~-~~~g~i-----------------------~~Lv~ll~~~-~-~v~~~a~~~L~~l~~~~~~~~~  199 (552)
                             ..++.  . ...|++                       +.|+++++.. + .++..+..+|..+. .++..++
T Consensus       320 ~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~-gN~~l~~  398 (2102)
T PLN03200        320 YLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLY-GNAYLSR  398 (2102)
T ss_pred             HHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhc-CChHHHH
Confidence                   00011  1 112334                       4555555521 2 23445555555544 3455566


Q ss_pred             HHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcc
Q 008827          200 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRS  279 (552)
Q Consensus       200 ~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~  279 (552)
                      .+.+.++++.|+++|....  .+.++.++++|.+++.++++.++.+.+.|++|.|+++|++++..+|..+++++++++..
T Consensus       399 ~L~~~daik~LV~LL~~~~--~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~  476 (2102)
T PLN03200        399 KLNHAEAKKVLVGLITMAT--ADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE  476 (2102)
T ss_pred             HHHhccchhhhhhhhccCC--HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            6778899999999998774  78999999999999988889999999999999999999999999999999999999986


Q ss_pred             cccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 008827          280 IKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR  359 (552)
Q Consensus       280 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~  359 (552)
                      .+..+.. +.+.|++|+|+++|.+++.++++.|+|+|+|++.+.+..+..+.+.|++++|+++|++++.+.+..++|+|.
T Consensus       477 ndenr~a-IieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~  555 (2102)
T PLN03200        477 VDESKWA-ITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLT  555 (2102)
T ss_pred             CHHHHHH-HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            5555666 889999999999999999999999999999999866555655667899999999999999999999999999


Q ss_pred             HhcccCChH---------------hHH---------------------HHHHhhcHHHHHhhhcCCChhHHHHHHHHHHH
Q 008827          360 NLIFLAEDK---------------CKE---------------------EIFMELTASLLASLICDPEPSVQEQALALVRN  403 (552)
Q Consensus       360 ~l~~~~~~~---------------~~~---------------------~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~  403 (552)
                      |++...+++               .+.                     .....++++.|.++++++++.+++.|+|+|.+
T Consensus       556 nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsn  635 (2102)
T PLN03200        556 KLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLAD  635 (2102)
T ss_pred             HHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            997533321               111                     01134789999999999999999999999999


Q ss_pred             hhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCCh-hhHHHHHHHhhHhhhhhhHHHHHHhhcC
Q 008827          404 LVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE-SHKEAVMDQLLLRAENKAQSCIIKFLQS  482 (552)
Q Consensus       404 l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~-~~~~~i~~~~~~~~~~~~v~~Lv~lL~~  482 (552)
                      ++.++++..+.++..+  .++.++.+|++ ++.+++..++|+|+|++.+.. .++..+++       .|++++|+++|++
T Consensus       636 L~a~~~d~~~avv~ag--aIpPLV~LLss-~~~~v~keAA~AL~nL~~~~~~~q~~~~v~-------~GaV~pL~~LL~~  705 (2102)
T PLN03200        636 IFSSRQDLCESLATDE--IINPCIKLLTN-NTEAVATQSARALAALSRSIKENRKVSYAA-------EDAIKPLIKLAKS  705 (2102)
T ss_pred             HhcCChHHHHHHHHcC--CHHHHHHHHhc-CChHHHHHHHHHHHHHHhCCCHHHHHHHHH-------cCCHHHHHHHHhC
Confidence            9999988888888888  68999999988 889999999999999997443 34445565       8999999999999


Q ss_pred             CChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          483 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       483 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      ++..++..|+.+|.|++.     ..+....+...|++++|+++++++++++|+.|.|||.++.+.
T Consensus       706 ~d~~v~e~Al~ALanLl~-----~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~  765 (2102)
T PLN03200        706 SSIEVAEQAVCALANLLS-----DPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH  765 (2102)
T ss_pred             CChHHHHHHHHHHHHHHc-----CchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence            999999999999999995     334567788899999999999999999999999999888754

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4e-41  Score=329.09  Aligned_cols=370  Identities=21%  Similarity=0.286  Sum_probs=324.1

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHH
Q 008827          123 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKL  200 (552)
Q Consensus       123 l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~  200 (552)
                      ....+..+.++++..+..|...+..+.........+.++..|++|.+|+.++  +++.++.+|+|+|+|++++..+..+.
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            5566778889999999999999999877766556777888899999999997  45789999999999999999999999


Q ss_pred             HHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCH-HHHHHHHHHHHHhhcc
Q 008827          201 AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS-DVRSAACMCLRSVSRS  279 (552)
Q Consensus       201 ~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~-~v~~~a~~~L~~ls~~  279 (552)
                      ++++|++|.|+.++.+++  ..++++|+|+|++++.+.+.+|..+++.|++++++.++...+. .....+.|+|.||+++
T Consensus       148 vv~agavp~fi~Ll~s~~--~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg  225 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPS--ADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG  225 (514)
T ss_pred             cccCCchHHHHHHhcCCc--HHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence            999999999999888874  8899999999999999999999999999999999999997765 8889999999999998


Q ss_pred             cccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 008827          280 IKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR  359 (552)
Q Consensus       280 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~  359 (552)
                      ......- -.-..++|.|..++.+.|+++...|+||+++|+.+..+..+.+++.|+++.|+.+|.+++..++..|+++++
T Consensus       226 k~P~P~~-~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiG  304 (514)
T KOG0166|consen  226 KNPSPPF-DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIG  304 (514)
T ss_pred             CCCCCcH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcc
Confidence            5322211 134688999999999999999999999999999998888999999999999999999998888888888888


Q ss_pred             HhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHH
Q 008827          360 NLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIE  439 (552)
Q Consensus       360 ~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~  439 (552)
                      |++.+.+                                           .+++.++..+  .++.|..++..++...++
T Consensus       305 NIvtG~d-------------------------------------------~QTq~vi~~~--~L~~l~~ll~~s~~~~ik  339 (514)
T KOG0166|consen  305 NIVTGSD-------------------------------------------EQTQVVINSG--ALPVLSNLLSSSPKESIK  339 (514)
T ss_pred             ceeeccH-------------------------------------------HHHHHHHhcC--hHHHHHHHhccCcchhHH
Confidence            8776543                                           2344444445  677888888765788899


Q ss_pred             HHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcH
Q 008827          440 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIV  519 (552)
Q Consensus       440 ~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~  519 (552)
                      ..|||+++|+++|+..+.+.+++       .|++|.|+.+|++++++.|++|+|+|+|++.   +|+.++..+|++.|++
T Consensus       340 kEAcW~iSNItAG~~~qiqaVid-------a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts---~g~~~qi~yLv~~giI  409 (514)
T KOG0166|consen  340 KEACWTISNITAGNQEQIQAVID-------ANLIPVLINLLQTAEFDIRKEAAWAISNLTS---SGTPEQIKYLVEQGII  409 (514)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHH-------cccHHHHHHHHhccchHHHHHHHHHHHhhcc---cCCHHHHHHHHHcCCc
Confidence            99999999999999999999997       8999999999999999999999999999994   6889999999999999


Q ss_pred             HHHHhhhcCCCccHHHHHHHHHHHHhhhcCC
Q 008827          520 SHVKNMVNDPCLDVKLRVKTALEQFNSFDDS  550 (552)
Q Consensus       520 ~~L~~ll~~~~~~v~~~a~~al~~~~~~~~~  550 (552)
                      ++|..++.-.+.++-..+..+|+++.+.+|+
T Consensus       410 ~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~  440 (514)
T KOG0166|consen  410 KPLCDLLTCPDVKIILVALDGLENILKVGEA  440 (514)
T ss_pred             hhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence            9999999755556667889999999998765

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=4.1e-40  Score=297.79  Aligned_cols=373  Identities=17%  Similarity=0.206  Sum_probs=314.5

Q ss_pred             ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC--CCchhchHHHHHHHhhcCCHHHH
Q 008827          121 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQ  198 (552)
Q Consensus       121 ~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~--~~~v~~~a~~~L~~l~~~~~~~~  198 (552)
                      .-+|.+.+.+.++|.+.+..|..-+..+.+.....-.+.+++.|++|.+++++++  ..-.+.+|+|+|+|++++.....
T Consensus        71 ~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT  150 (526)
T COG5064          71 SELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT  150 (526)
T ss_pred             hhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence            3568888888999999999999888887776655567889999999999999973  34568999999999999988887


Q ss_pred             HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCH--HHHHHHHHHHHHh
Q 008827          199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS--DVRSAACMCLRSV  276 (552)
Q Consensus       199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~--~v~~~a~~~L~~l  276 (552)
                      +.++++|++|.++++|.++.  .+++++++|+|++++.+++.+|+.+.+.|.+.+++.++.+.-.  .+...+.|.|.||
T Consensus       151 kvVvd~~AVPlfiqlL~s~~--~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl  228 (526)
T COG5064         151 KVVVDAGAVPLFIQLLSSTE--DDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL  228 (526)
T ss_pred             EEEEeCCchHHHHHHHcCch--HHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence            88899999999999998875  7799999999999999999999999999999999999986544  7889999999999


Q ss_pred             hcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHH
Q 008827          277 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR  356 (552)
Q Consensus       277 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~  356 (552)
                      ++.. +....+-.-...+|.|.+++...|+++...|+||+++++.+..+..+.+++.|..+.|+++|.+++..++..+++
T Consensus       229 cRGk-nP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR  307 (526)
T COG5064         229 CRGK-NPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR  307 (526)
T ss_pred             hCCC-CCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence            9873 322221234577899999999999999999999999999988877788888888888888888777666666666


Q ss_pred             HHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCch
Q 008827          357 ALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA  436 (552)
Q Consensus       357 aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~  436 (552)
                      .++|+..+.                                           +++.+.++..|  +++.+..+|.+ ++.
T Consensus       308 ~vGNIVTG~-------------------------------------------D~QTqviI~~G--~L~a~~~lLs~-~ke  341 (526)
T COG5064         308 SVGNIVTGS-------------------------------------------DDQTQVIINCG--ALKAFRSLLSS-PKE  341 (526)
T ss_pred             hhcCeeecC-------------------------------------------ccceehheecc--cHHHHHHHhcC-hhh
Confidence            666665543                                           34455556656  67777777777 888


Q ss_pred             hHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHC
Q 008827          437 EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDA  516 (552)
Q Consensus       437 ~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~  516 (552)
                      .++..+||.++|+++|+..+.+.+++       .+++|.|+.+|++.+...|++|||+++|.++. ..+.++.+++|++.
T Consensus       342 ~irKEaCWTiSNITAGnteqiqavid-------~nliPpLi~lls~ae~k~kKEACWAisNatsg-g~~~PD~iryLv~q  413 (526)
T COG5064         342 NIRKEACWTISNITAGNTEQIQAVID-------ANLIPPLIHLLSSAEYKIKKEACWAISNATSG-GLNRPDIIRYLVSQ  413 (526)
T ss_pred             hhhhhhheeecccccCCHHHHHHHHh-------cccchHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCCchHHHHHHHc
Confidence            99999999999999999999999997       89999999999999999999999999999962 22457899999999


Q ss_pred             CcHHHHHhhhcCCCccHHHHHHHHHHHHhhhcCC
Q 008827          517 GIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDS  550 (552)
Q Consensus       517 g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~~~  550 (552)
                      |++.+|..++.-.+..+-+-+..|++++.+.+++
T Consensus       414 G~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~  447 (526)
T COG5064         414 GFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQ  447 (526)
T ss_pred             cchhHHHHHHhccCccchhhhHHHHHHHHhhhhH
Confidence            9999999999744445566778999999988764

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-33  Score=275.69  Aligned_cols=324  Identities=18%  Similarity=0.271  Sum_probs=278.6

Q ss_pred             HHHHHHhhhcCCCChhhHHHHHHHHHHhhcC--ChhHHHHHHhcccHHHHHHhcC-CCCHHHHHHHHHHHHHhhcccccc
Q 008827          207 VDKLYNHLQKGSLHPRRFEGILLALADMCSK--LECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNL  283 (552)
Q Consensus       207 i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~--~~~~~~~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L~~ls~~~~~~  283 (552)
                      .+..+..+.+..  +..+..+...+..+...  ++.. ..+...|.+|.++.+|+ +.++.++..|+|+|.|++...+..
T Consensus        68 ~~~~~~~~~S~~--~~~q~~a~~~~rkllS~~~~ppi-~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~  144 (514)
T KOG0166|consen   68 LELMLAALYSDD--PQQQLTATQAFRKLLSKERNPPI-DEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ  144 (514)
T ss_pred             hHHHHHHHhCCC--HHHHHHHHHHHHHHHccCCCCCH-HHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh
Confidence            344455455542  54566666666655442  2333 44555599999999997 667999999999999999886655


Q ss_pred             cchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCH-HHHHHHHHHHHHhc
Q 008827          284 SAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS-TIRLNALRALRNLI  362 (552)
Q Consensus       284 ~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~aL~~l~  362 (552)
                      ... ++++|.+|.+++++.+++..+++.|+|||+|++.+.+.+|..+++.|++++|+.++..++. ....++.|+|.|+|
T Consensus       145 T~~-vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc  223 (514)
T KOG0166|consen  145 TKV-VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC  223 (514)
T ss_pred             ccc-cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            555 7899999999999999999999999999999999999999999999999999999988765 78899999999999


Q ss_pred             ccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHH
Q 008827          363 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG  442 (552)
Q Consensus       363 ~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a  442 (552)
                      ++.+|.-.... -...++.|..++.+.|+++...|+|++++++++.++.++.+++.|  +++.|+.+|.+ +++.++..|
T Consensus       224 rgk~P~P~~~~-v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~g--vv~~LV~lL~~-~~~~v~~Pa  299 (514)
T KOG0166|consen  224 RGKNPSPPFDV-VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAG--VVPRLVDLLGH-SSPKVVTPA  299 (514)
T ss_pred             cCCCCCCcHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcc--chHHHHHHHcC-CCcccccHH
Confidence            98754222222 234689999999999999999999999999999999999999998  89999999998 888999999


Q ss_pred             HHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHH
Q 008827          443 MYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSH  521 (552)
Q Consensus       443 ~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~  521 (552)
                      +.+++|+++|+..+.+.++.       +|+++.|..++. ++....|++|+|+|+|++.    |++++++.+.+.|.+|.
T Consensus       300 LRaiGNIvtG~d~QTq~vi~-------~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA----G~~~qiqaVida~l~p~  368 (514)
T KOG0166|consen  300 LRAIGNIVTGSDEQTQVVIN-------SGALPVLSNLLSSSPKESIKKEACWTISNITA----GNQEQIQAVIDANLIPV  368 (514)
T ss_pred             HhhccceeeccHHHHHHHHh-------cChHHHHHHHhccCcchhHHHHHHHHHHHhhc----CCHHHHHHHHHcccHHH
Confidence            99999999999999998886       899999999998 5667799999999999996    89999999999999999


Q ss_pred             HHhhhcCCCccHHHHHHHHHHHHhhhcC
Q 008827          522 VKNMVNDPCLDVKLRVKTALEQFNSFDD  549 (552)
Q Consensus       522 L~~ll~~~~~~v~~~a~~al~~~~~~~~  549 (552)
                      |+.+++++..+.|..|+||+.++...+.
T Consensus       369 Li~~l~~~ef~~rKEAawaIsN~ts~g~  396 (514)
T KOG0166|consen  369 LINLLQTAEFDIRKEAAWAISNLTSSGT  396 (514)
T ss_pred             HHHHHhccchHHHHHHHHHHHhhcccCC
Confidence            9999998889999999999999877653

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-33  Score=256.70  Aligned_cols=402  Identities=16%  Similarity=0.157  Sum_probs=339.1

Q ss_pred             cccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhh
Q 008827           34 QEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVS  112 (552)
Q Consensus        34 ~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~  112 (552)
                      +.+...++..++.+.++.++.++...+.+++.+.+++..+++.+++++|+.-..+ ...+|.++..|+.+++..++.. .
T Consensus        83 sres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk-~  161 (550)
T KOG4224|consen   83 SRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNK-V  161 (550)
T ss_pred             hhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccch-h
Confidence            3467788899999999999999999999999888888888888888877655554 5688999999999998774443 3


Q ss_pred             hhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhh
Q 008827          113 QFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLI  191 (552)
Q Consensus       113 ~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~  191 (552)
                      .++.   .|++.++.++.++++..+|..|...|.++.....  .+...+.+|++|.|+++++ .+.++|..++.++++++
T Consensus       162 kiA~---sGaL~pltrLakskdirvqrnatgaLlnmThs~E--nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIa  236 (550)
T KOG4224|consen  162 KIAR---SGALEPLTRLAKSKDIRVQRNATGALLNMTHSRE--NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIA  236 (550)
T ss_pred             hhhh---ccchhhhHhhcccchhhHHHHHHHHHHHhhhhhh--hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhh
Confidence            5543   7889999999999999999999999999988654  3567889999999999999 57899999999999999


Q ss_pred             cCCHHHHHHHHHhC--cHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHH
Q 008827          192 AEKEDMQKLAFEVN--GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAA  269 (552)
Q Consensus       192 ~~~~~~~~~~~~~~--~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a  269 (552)
                      .+.. .++...+.+  .+|.|+++..+++  ++++-+|..+|.+++. +++++..+++.|.+|.++++++++.-+...+.
T Consensus       237 Vd~~-~Rk~Laqaep~lv~~Lv~Lmd~~s--~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Llqs~~~plilas  312 (550)
T KOG4224|consen  237 VDRR-ARKILAQAEPKLVPALVDLMDDGS--DKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELLQSPMGPLILAS  312 (550)
T ss_pred             hhHH-HHHHHHhcccchHHHHHHHHhCCC--hHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHHhCcchhHHHHH
Confidence            7654 466777777  7999999888774  8899999999999986 46788899999999999999999999999999


Q ss_pred             HHHHHHhhcccccccchhhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCH
Q 008827          270 CMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT-STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS  348 (552)
Q Consensus       270 ~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~  348 (552)
                      +.|++|++.+.-+ ... +.+.|++.|||++|+.. +++++..|..+|.|++..+..++..+.+.|++|.+.+++.++..
T Consensus       313 VaCIrnisihplN-e~l-I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pv  390 (550)
T KOG4224|consen  313 VACIRNISIHPLN-EVL-IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPV  390 (550)
T ss_pred             HHHHhhcccccCc-ccc-eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCCh
Confidence            9999999987433 223 78999999999999864 56699999999999999888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhh-c---CchHH
Q 008827          349 TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAE-D---GIILD  424 (552)
Q Consensus       349 ~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-~---~~~~~  424 (552)
                      .+|.....++..++...  ..|..+.+.|.++.|+.++.+.+.+++.++..+|.|++....+ ...+++. +   +-+-.
T Consensus       391 svqseisac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~-YarviEawd~P~~gi~g  467 (550)
T KOG4224|consen  391 SVQSEISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH-YARVIEAWDHPVQGIQG  467 (550)
T ss_pred             hHHHHHHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH-HHHHHHHhcCcchhHHH
Confidence            99999888899888743  4789999999999999999999999999999999999977543 3334332 1   11456


Q ss_pred             HHHHHhcccCchhHHHHHHHHHHhhcC
Q 008827          425 AVGRQLRIASKAEIEIQGMYVLGNVAT  451 (552)
Q Consensus       425 ~l~~~L~~~~~~~v~~~a~~~L~~la~  451 (552)
                      .|.+++.+ ....++.-+.|.+..+..
T Consensus       468 ~L~Rfl~S-~~~tf~hia~wTI~qLle  493 (550)
T KOG4224|consen  468 RLARFLAS-HELTFRHIARWTIQQLLE  493 (550)
T ss_pred             HHHHHHhh-hHHHHHHHHHHHHHHHHH
Confidence            67777776 666777788888887775

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.8e-33  Score=254.80  Aligned_cols=327  Identities=18%  Similarity=0.217  Sum_probs=277.2

Q ss_pred             cHHHHHHhhhcCCCChhhHHHHHHHHHHhhc-CChhHHHHHHhcccHHHHHHhc-CCCCHHHHHHHHHHHHHhhcccccc
Q 008827          206 GVDKLYNHLQKGSLHPRRFEGILLALADMCS-KLECCRSRCLSLQVLKLVVDAL-AHDSSDVRSAACMCLRSVSRSIKNL  283 (552)
Q Consensus       206 ~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~~l~~lv~~L-~~~~~~v~~~a~~~L~~ls~~~~~~  283 (552)
                      -+|.+..-|.+.  +.+.+..+..-+..+.+ .+....+.+++.|.+|.++++| +......+..|+|+|.|++....+.
T Consensus        72 elp~lt~~l~Sd--Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q  149 (526)
T COG5064          72 ELPQLTQQLFSD--DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ  149 (526)
T ss_pred             hhHHHHHHHhhh--HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence            356666655554  24445555544444433 3333446788999999999999 5677888999999999998876554


Q ss_pred             cchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCH--HHHHHHHHHHHHh
Q 008827          284 SAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS--TIRLNALRALRNL  361 (552)
Q Consensus       284 ~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--~v~~~a~~aL~~l  361 (552)
                      ... .++.|.+|.++++|.+++.++++.++|||+|++.+++.+|..+++.|++++++.++.++..  ....++.|+|+|+
T Consensus       150 Tkv-Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl  228 (526)
T COG5064         150 TKV-VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL  228 (526)
T ss_pred             eEE-EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence            444 7899999999999999999999999999999999999999999999999999999987654  6788999999999


Q ss_pred             cccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHH
Q 008827          362 IFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQ  441 (552)
Q Consensus       362 ~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~  441 (552)
                      |++..|.-.-..+ ...++.|.+++.+.|+++...|+|++..+..+..+.++.++..|  +...|+.+|.+ ++..|+..
T Consensus       229 cRGknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g--~~~RLvElLs~-~sa~iqtP  304 (526)
T COG5064         229 CRGKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVG--IPGRLVELLSH-ESAKIQTP  304 (526)
T ss_pred             hCCCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcC--CcHHHHHHhcC-ccccccCH
Confidence            9986552222222 23689999999999999999999999999999999999999988  78899999988 89999999


Q ss_pred             HHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHH
Q 008827          442 GMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSH  521 (552)
Q Consensus       442 a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~  521 (552)
                      ++..++|+.+|+..+.+.++.       +|+++++-.+|+++...+|++|||+|+|++.    |+.++++...+.+.+|+
T Consensus       305 alR~vGNIVTG~D~QTqviI~-------~G~L~a~~~lLs~~ke~irKEaCWTiSNITA----Gnteqiqavid~nliPp  373 (526)
T COG5064         305 ALRSVGNIVTGSDDQTQVIIN-------CGALKAFRSLLSSPKENIRKEACWTISNITA----GNTEQIQAVIDANLIPP  373 (526)
T ss_pred             HHHhhcCeeecCccceehhee-------cccHHHHHHHhcChhhhhhhhhheeeccccc----CCHHHHHHHHhcccchH
Confidence            999999999999888888886       9999999999999999999999999999996    89999999999999999


Q ss_pred             HHhhhcCCCccHHHHHHHHHHHHhhhcCC
Q 008827          522 VKNMVNDPCLDVKLRVKTALEQFNSFDDS  550 (552)
Q Consensus       522 L~~ll~~~~~~v~~~a~~al~~~~~~~~~  550 (552)
                      |++++.......|..|+||+.+...-+.+
T Consensus       374 Li~lls~ae~k~kKEACWAisNatsgg~~  402 (526)
T COG5064         374 LIHLLSSAEYKIKKEACWAISNATSGGLN  402 (526)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence            99999876777888999999987665543

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.9e-31  Score=241.09  Aligned_cols=445  Identities=17%  Similarity=0.162  Sum_probs=355.8

Q ss_pred             ccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhh
Q 008827           33 LQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVV  111 (552)
Q Consensus        33 ~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~  111 (552)
                      +..+.+..+.-|--|+..+.+..++-.++......- |.  +.....+++.-++++ ...++..+-.++++++-...+. 
T Consensus        44 yS~~plraltvL~ySDnlnlqrsaalafAeitek~v-r~--Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk-  119 (550)
T KOG4224|consen   44 YSASPLRALTVLKYSDNLNLQRSAALAFAEITEKGV-RR--VSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENK-  119 (550)
T ss_pred             cCCCccchheeeeeccccccchHHHHHHHHHHHHHH-HH--hhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCc-
Confidence            333334433333345566666666666555542111 11  234567788888887 5689999999999988654332 


Q ss_pred             hhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHh
Q 008827          112 SQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSL  190 (552)
Q Consensus       112 ~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l  190 (552)
                      .-+++   -.++..++.-+..+...+|..|++|+++++..+..  +..+...|++.++.++-+ ++..+|..+..+|.+|
T Consensus       120 ~liv~---l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~n--k~kiA~sGaL~pltrLakskdirvqrnatgaLlnm  194 (550)
T KOG4224|consen  120 GLIVS---LLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSN--KVKIARSGALEPLTRLAKSKDIRVQRNATGALLNM  194 (550)
T ss_pred             eEEEe---ccChHHHHHHhcCCCcEEEeeehhhhhhhhccccc--hhhhhhccchhhhHhhcccchhhHHHHHHHHHHHh
Confidence            22332   46777788777888999999999999999987544  445778899999999776 5678999999999999


Q ss_pred             hcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcc--cHHHHHHhcCCCCHHHHHH
Q 008827          191 IAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ--VLKLVVDALAHDSSDVRSA  268 (552)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~--~l~~lv~~L~~~~~~v~~~  268 (552)
                      . +..++++..+..|++|.|+++++.++  ++++..+..++++++. +...|+.+.+.+  ++|.+++++.++++.++..
T Consensus       195 T-hs~EnRr~LV~aG~lpvLVsll~s~d--~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcq  270 (550)
T KOG4224|consen  195 T-HSRENRRVLVHAGGLPVLVSLLKSGD--LDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQ  270 (550)
T ss_pred             h-hhhhhhhhhhccCCchhhhhhhccCC--hhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHH
Confidence            7 45567888999999999999998875  8899999999999986 567888888887  9999999999999999999


Q ss_pred             HHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC-C
Q 008827          269 ACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-D  347 (552)
Q Consensus       269 a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~  347 (552)
                      |..+|++++...+..+ . ++++|.+|.++++++++.-....+.+.++.|++-.. -+...+.+.|.+.+|+++|... +
T Consensus       271 A~lALrnlasdt~Yq~-e-iv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp-lNe~lI~dagfl~pLVrlL~~~dn  347 (550)
T KOG4224|consen  271 AGLALRNLASDTEYQR-E-IVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP-LNEVLIADAGFLRPLVRLLRAGDN  347 (550)
T ss_pred             HHHHHhhhcccchhhh-H-HHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc-CcccceecccchhHHHHHHhcCCc
Confidence            9999999998755443 4 799999999999999987777788888999998643 3444788899999999999875 5


Q ss_pred             HHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHH
Q 008827          348 STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVG  427 (552)
Q Consensus       348 ~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~  427 (552)
                      ++++..|..+|.|++.. ...++..+.+.|.++.+..++.+...++|.....++.-++.++. ...++.+.|  +++.|.
T Consensus       348 EeiqchAvstLrnLAas-se~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~-~k~~lld~g--i~~iLI  423 (550)
T KOG4224|consen  348 EEIQCHAVSTLRNLAAS-SEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN-DKEALLDSG--IIPILI  423 (550)
T ss_pred             hhhhhhHHHHHHHHhhh-hhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc-cHHHHhhcC--Ccceee
Confidence            67999999999999873 34688899999999999999999999999999999988887654 345666666  788888


Q ss_pred             HHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          428 RQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       428 ~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      .+..+ .+.+++.+++.+|.|++..-+ +-..+++ .|..+..|+-.+|++++.|.+..++..+.|+|..+..
T Consensus       424 p~t~s-~s~Ev~gNaAaAL~Nlss~v~-~YarviE-awd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle  493 (550)
T KOG4224|consen  424 PWTGS-ESEEVRGNAAAALINLSSDVE-HYARVIE-AWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLE  493 (550)
T ss_pred             cccCc-cchhhcccHHHHHHhhhhhhH-HHHHHHH-HhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            87777 889999999999999997544 4555665 3444445777789999999999999999999999996

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.97  E-value=1.3e-27  Score=234.96  Aligned_cols=521  Identities=24%  Similarity=0.261  Sum_probs=361.1

Q ss_pred             CCCCc-HHHHHHHHHHHHHHHcCC-CCCCccccccc-chHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCch
Q 008827            3 LLKSY-MEVVDAGARSLKMIYQSK-MAPKYDFLQEE-NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVL   79 (552)
Q Consensus         3 ~~~~~-~~~~~~~l~~l~~l~~~~-~~~~~~~~~~~-~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i   79 (552)
                      |++++ .++++.+++|+++++.+. ..+++...... .++.+..+++-+.+.+.+.-+...+++|+...++..++..|+.
T Consensus       104 Ls~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~  183 (678)
T KOG1293|consen  104 LSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGIL  183 (678)
T ss_pred             hcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccch
Confidence            46677 899999999999998775 55544444334 4455554444367788899999999999999999999999999


Q ss_pred             HHHHHhhcC-CHHHHHHHHHHHH---HHhcCChhhhhhhccc-cCCccHH--HHHHHHhcCChhhHHHHHHHHHHHhhhC
Q 008827           80 KRLTSLLGG-SLIQRDASLESIA---TIFKNNPEVVSQFVGP-DTGRTLS--CIIEIVKDRFARTRLLASLCLIVIRNAS  152 (552)
Q Consensus        80 ~~L~~lL~~-~~~v~~~al~~L~---~l~~~~~~~~~~~~~~-~~~~~l~--~l~~ll~~~~~~vr~~A~~~L~~l~~~~  152 (552)
                      +.+.-++.. +...|.+|+.+++   ++...++.....+... .+.+..+  .+.++.+++++..|..++.|+..+...+
T Consensus       184 ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s  263 (678)
T KOG1293|consen  184 EKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKS  263 (678)
T ss_pred             hhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhcc
Confidence            999999987 7899999999999   7777776665443322 2344444  4567999999999999999999998866


Q ss_pred             CCcc----hhhhhHHhHHHHHH-----HhcCCCCchhchH-HHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCC----
Q 008827          153 PCYL----QDVGIKTKLINNLL-----ELLDDPGRVGDEA-SFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS----  218 (552)
Q Consensus       153 ~~~~----~~~~~~~g~i~~Lv-----~ll~~~~~v~~~a-~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~----  218 (552)
                      .++.    -..+...| -..++     .++.++......+ +.....++.--+..+...++...++.+.+++....    
T Consensus       264 ~~~d~l~~~~~~~dmg-d~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a  342 (678)
T KOG1293|consen  264 FNYDPLPWWFIFFDMG-DSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAA  342 (678)
T ss_pred             ccccccccceeeccCc-hHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhh
Confidence            2210    00011111 11111     1222332222222 22222333333344555666666666666554331    


Q ss_pred             CChhhHHHHH---HHHHHhhcC-ChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcH
Q 008827          219 LHPRRFEGIL---LALADMCSK-LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIV  294 (552)
Q Consensus       219 ~~~~~~~~a~---~aL~~l~~~-~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i  294 (552)
                      ..++.+.-++   .....++.. .-..++.+.+......+.......+..++.+||.++.+++++...++.. +....++
T Consensus       343 ~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg-~~~~dv~  421 (678)
T KOG1293|consen  343 SDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG-LKRNDVA  421 (678)
T ss_pred             cchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC-CccchhH
Confidence            1122222111   111222221 1234455555555555555556788999999999999999999999988 8889999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHH
Q 008827          295 IPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIF  374 (552)
Q Consensus       295 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~  374 (552)
                      .+|++++.+++..++..+.++|+|++.++++.+..++..|+|+.+.+++.+.++.+|.+++|+|.++.++.+.+.+....
T Consensus       422 ~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~  501 (678)
T KOG1293|consen  422 QPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLL  501 (678)
T ss_pred             HHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988877888888


Q ss_pred             HhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCCh
Q 008827          375 MELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE  454 (552)
Q Consensus       375 ~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~  454 (552)
                      ...+...+..+..++++.||++++.++||+.++..+.++++++.-+.++......+.-++...+-.....-+.++..+..
T Consensus       502 ~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d  581 (678)
T KOG1293|consen  502 AKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFKDVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLD  581 (678)
T ss_pred             HHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhHHHHHHHHHHhhccCCceehhhHHHHHHhccchh
Confidence            88889999999999999999999999999999999999999988654444433334433444455555555556665555


Q ss_pred             hhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhh
Q 008827          455 SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMV  526 (552)
Q Consensus       455 ~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll  526 (552)
                      -+....+++.+++--.+.-....+...+.....+.++.|.+.|+.|..+++. ..+..+...++.++..++-
T Consensus       582 ~~~~~am~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~~~~s~s~-~dr~~~~~n~i~e~~~k~~  652 (678)
T KOG1293|consen  582 TQQKKAMEGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLTTTDSSSN-FDRSNLKLNCIWELNNKLW  652 (678)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCCCCCcc-cchhhccccceechhhhcc
Confidence            4555555433221111110111123345667899999999999999755443 3444455556666666553

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.92  E-value=3.9e-21  Score=199.75  Aligned_cols=502  Identities=16%  Similarity=0.173  Sum_probs=358.0

Q ss_pred             HHHHHHHHHHHHcCCCCCCcccc-cccchHHHHHhhcC---CCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhh
Q 008827           11 VDAGARSLKMIYQSKMAPKYDFL-QEENMEFLLSLLNN---ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLL   86 (552)
Q Consensus        11 ~~~~l~~l~~l~~~~~~~~~~~~-~~~~i~~l~~ll~~---~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL   86 (552)
                      ...+...+..++..|+.- +.++ ++..+..|.+.|+.   .+.++......++.+++...++-..+....+-..-+.++
T Consensus       139 k~~~~~~il~La~~~~NL-~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~fH~~l~~~kiG~l~m~ii  217 (708)
T PF05804_consen  139 KIRGTSLILQLARNPENL-EELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQFHPILAHYKIGSLCMEII  217 (708)
T ss_pred             HHHHHHHHHHHhCCcchH-HHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHhccHHHHHHHHH
Confidence            445567788888888777 5665 56678999999963   455667777888888887666655555443333334444


Q ss_pred             cCCH---HHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHH
Q 008827           87 GGSL---IQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKT  163 (552)
Q Consensus        87 ~~~~---~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~  163 (552)
                      ....   .....-+......+...+...+.+     ......+-.+++..+.-.| .+...|.|++....  ....++..
T Consensus       218 e~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~-----~~~~kk~~~l~~kQeqLlr-v~~~lLlNLAed~~--ve~kM~~~  289 (708)
T PF05804_consen  218 EHELKRHDLWQEELRKKKKAAEEKPEAKKDY-----EKELKKLQTLIRKQEQLLR-VAFYLLLNLAEDPR--VELKMVNK  289 (708)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhccchhhhhhH-----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcChH--HHHHHHhc
Confidence            3211   111111222222222222221111     1123334445555555555 77888999998653  34557789


Q ss_pred             hHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHH
Q 008827          164 KLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR  242 (552)
Q Consensus       164 g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~  242 (552)
                      |+++.|+++|+ ++.++...+...|.+|+...+ ++..+.+.|.+++|++++...+  ...+..+++.|.||+. +++.|
T Consensus       290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E-NK~~m~~~giV~kL~kLl~s~~--~~l~~~aLrlL~NLSf-d~~~R  365 (708)
T PF05804_consen  290 GIVSLLVKCLDRENEELLILAVTFLKKLSIFKE-NKDEMAESGIVEKLLKLLPSEN--EDLVNVALRLLFNLSF-DPELR  365 (708)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCHHHHHHHhcCCC--HHHHHHHHHHHHHhCc-CHHHH
Confidence            99999999998 456778888899999986554 5788899999999999998764  7789999999999985 67889


Q ss_pred             HHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 008827          243 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVV  321 (552)
Q Consensus       243 ~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~  321 (552)
                      ..+++.|++|.++.+|++++  .+..+..+|.++|.. +..+.. |...+++|.+++++- .+++++...+.+.+.|++.
T Consensus       366 ~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~d-d~~r~~-f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~  441 (708)
T PF05804_consen  366 SQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMD-DEARSM-FAYTDCIPQLMQMLLENSEEEVQLELIALLINLAL  441 (708)
T ss_pred             HHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccC-HhhHHH-HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc
Confidence            99999999999999998654  456688999999987 334444 777889999999764 5677888888999999997


Q ss_pred             CCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC-CChhHHHHHHHH
Q 008827          322 DFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-PEPSVQEQALAL  400 (552)
Q Consensus       322 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~-~~~~v~~~a~~~  400 (552)
                      +. .+.+.+.+.|+++.|++..-.....+   .+..+.|++.+.++ .+..+.  ..+..|+.++.. ++++....++++
T Consensus       442 ~~-rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~-~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGi  514 (708)
T PF05804_consen  442 NK-RNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGP-LKELFV--DFIGDLAKIVSSGDSEEFVVECLGI  514 (708)
T ss_pred             CH-HHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCch-HHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHH
Confidence            54 55678888899999997765433222   34578888876532 443332  245556666654 577899999999


Q ss_pred             HHHhhcCCcchHHHHHhhcCchHHHHHHHhccc-CchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHh
Q 008827          401 VRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF  479 (552)
Q Consensus       401 L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~-~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~l  479 (552)
                      |+|+...+.+ ...++++.+ +++++...|... ..+++...+...++.++.. +.....+..       .|+++.|+.+
T Consensus       515 LaNL~~~~ld-~~~ll~~~~-llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-~~~A~lL~~-------sgli~~Li~L  584 (708)
T PF05804_consen  515 LANLTIPDLD-WAQLLQEYN-LLPWLKDLLKPGASEDDLLLEVVILLGTLASD-PECAPLLAK-------SGLIPTLIEL  584 (708)
T ss_pred             HHhcccCCcC-HHHHHHhCC-HHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-HHHHHHHHh-------CChHHHHHHH
Confidence            9999876543 444555433 899999999652 3457888899999998863 333444443       8999999999


Q ss_pred             hcC--CChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhcCC
Q 008827          480 LQS--NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDS  550 (552)
Q Consensus       480 L~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~~~  550 (552)
                      |++  .|.+.....+++..++.+  .+.+  +..-+.+.++...|+.+++|.++++|+-+-.+|..+.+++++
T Consensus       585 L~~kqeDdE~VlQil~~f~~ll~--h~~t--r~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~  653 (708)
T PF05804_consen  585 LNAKQEDDEIVLQILYVFYQLLF--HEET--REVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEE  653 (708)
T ss_pred             HHhhCchHHHHHHHHHHHHHHHc--ChHH--HHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHH
Confidence            986  467888999999999996  2223  223345678899999999999999999999999999888654

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.90  E-value=2.1e-20  Score=194.36  Aligned_cols=394  Identities=15%  Similarity=0.138  Sum_probs=306.4

Q ss_pred             CCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHH
Q 008827            5 KSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTS   84 (552)
Q Consensus         5 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~   84 (552)
                      ..+..+++.|...|.+++.-+... ..+.+.+.++.|+++|.+++..+...+.+.|.+++-..+++..+.+.|++++|.+
T Consensus       260 ~kQeqLlrv~~~lLlNLAed~~ve-~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~k  338 (708)
T PF05804_consen  260 RKQEQLLRVAFYLLLNLAEDPRVE-LKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLK  338 (708)
T ss_pred             HHHHHHHHHHHHHHHHHhcChHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHH
Confidence            345678889999999998776666 6677889999999999988899999999999999999999999999999999999


Q ss_pred             hhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHH
Q 008827           85 LLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKT  163 (552)
Q Consensus        85 lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~  163 (552)
                      ++.+ +..++..+++.|.+|++++.. +                                              ..++..
T Consensus       339 Ll~s~~~~l~~~aLrlL~NLSfd~~~-R----------------------------------------------~~mV~~  371 (708)
T PF05804_consen  339 LLPSENEDLVNVALRLLFNLSFDPEL-R----------------------------------------------SQMVSL  371 (708)
T ss_pred             HhcCCCHHHHHHHHHHHHHhCcCHHH-H----------------------------------------------HHHHHC
Confidence            9997 567888999999998876432 2                                              234556


Q ss_pred             hHHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHH
Q 008827          164 KLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRS  243 (552)
Q Consensus       164 g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~  243 (552)
                      |++|.|+.+|.++ ..+..+..+|.+++.++ ..+..+...+++|.+++++...+ ++.+....+..+.+++. ++.+.+
T Consensus       372 GlIPkLv~LL~d~-~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~-~~~v~~eliaL~iNLa~-~~rnaq  447 (708)
T PF05804_consen  372 GLIPKLVELLKDP-NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENS-EEEVQLELIALLINLAL-NKRNAQ  447 (708)
T ss_pred             CCcHHHHHHhCCC-chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCC-CccccHHHHHHHHHHhc-CHHHHH
Confidence            7777777777642 34445666666666544 34555666788999999876653 35555566777888886 456667


Q ss_pred             HHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcC
Q 008827          244 RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-TSTAVQVAALGAISNIVVD  322 (552)
Q Consensus       244 ~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~  322 (552)
                      .+.+.|+++.|++..-.....+   ..++++|+|.+.+..... |  .+++.+|+.++.. ++++...++.++|+|+...
T Consensus       448 lm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~-f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~  521 (708)
T PF05804_consen  448 LMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKEL-F--VDFIGDLAKIVSSGDSEEFVVECLGILANLTIP  521 (708)
T ss_pred             HHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHH-H--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence            8888889999988765433222   346899999986454433 3  3688888888864 5789999999999999976


Q ss_pred             CchhHHHHHhhCcHHHHHHhhcCC--CHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc--CCChhHHHHHH
Q 008827          323 FTTRRSTFIRLGGVKLLVQLSKSM--DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQAL  398 (552)
Q Consensus       323 ~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~--~~~~~v~~~a~  398 (552)
                      ..++.+.+.+.+.+|.+..+|..+  .+++...++..++.++.  ++.+...+.+.|.++.++.+++  ..|.++..|.+
T Consensus       522 ~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil  599 (708)
T PF05804_consen  522 DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQIL  599 (708)
T ss_pred             CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHH
Confidence            656666666789999999999764  46789999999999986  5678888889999999999997  46788999999


Q ss_pred             HHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHH
Q 008827          399 ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVM  461 (552)
Q Consensus       399 ~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~  461 (552)
                      .++..+..+.+ ..+.++++.+ +...+..++++ +|++|+..|-.+|.-++..+++....|-
T Consensus       600 ~~f~~ll~h~~-tr~~ll~~~~-~~~ylidL~~d-~N~~ir~~~d~~Ldii~e~d~~w~~ri~  659 (708)
T PF05804_consen  600 YVFYQLLFHEE-TREVLLKETE-IPAYLIDLMHD-KNAEIRKVCDNALDIIAEYDEEWAERIR  659 (708)
T ss_pred             HHHHHHHcChH-HHHHHHhccc-hHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCHHHHHHhh
Confidence            99999998743 5667766654 67888888888 9999999988888888876665544443

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.78  E-value=4.1e-16  Score=146.78  Aligned_cols=448  Identities=13%  Similarity=0.063  Sum_probs=302.6

Q ss_pred             hHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHh----cCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhh
Q 008827           38 MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFD----AGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVS  112 (552)
Q Consensus        38 i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~----~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~  112 (552)
                      -....+.....+..+......+++..++++..|..+.+    .|.++.|.+...+ +..+...+.++|+++|+++.+.+.
T Consensus        44 ek~~~~~i~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~  123 (604)
T KOG4500|consen   44 EKIQASGIMTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRA  123 (604)
T ss_pred             HHHHhcceeeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHH
Confidence            34455555667788888889999998877666655544    4566666666666 468899999999999999988887


Q ss_pred             hhccccCCccHHHHHHH-Hh-cCChhhHH--HHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCC--chhchHHH
Q 008827          113 QFVGPDTGRTLSCIIEI-VK-DRFARTRL--LASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPG--RVGDEASF  185 (552)
Q Consensus       113 ~~~~~~~~~~l~~l~~l-l~-~~~~~vr~--~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~--~v~~~a~~  185 (552)
                      .+.++.....+..+++- .. +.....+.  .+...|.|....+. ..+.+....|+++.|..++. +..  ...+....
T Consensus       124 a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~-~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~  202 (604)
T KOG4500|consen  124 AFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSR-ELRAQVADAGVLNTLAITYWIDWQNAALTEKLLA  202 (604)
T ss_pred             HHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcH-HHHHHHHhcccHHHHHHHhhcccccHHHHHHHHh
Confidence            77765333334344432 22 22223333  45566666655443 34667888999999999997 222  22223222


Q ss_pred             HHHHhhcCCHH-HHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC-CC-
Q 008827          186 AFSSLIAEKED-MQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH-DS-  262 (552)
Q Consensus       186 ~L~~l~~~~~~-~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~-~~-  262 (552)
                      ...++.+-..+ ......++.....++++|... ..++.++-++..++..+. ++.++-.+.+.|.+..++++++. .+ 
T Consensus       203 ~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~-v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~  280 (604)
T KOG4500|consen  203 PFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSM-VREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDF  280 (604)
T ss_pred             ccccHHHHHHHhhhhhhccchHHHHHHHHHHHh-hccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccc
Confidence            23333321111 122344566677888877766 457788999999999875 56777888899999988888864 11 


Q ss_pred             ------HHHHHHHHHHHHHhhcccccccchhhhccC-cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCc
Q 008827          263 ------SDVRSAACMCLRSVSRSIKNLSAGSFMNET-IVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG  335 (552)
Q Consensus       263 ------~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~-~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~  335 (552)
                            ...-..++....-+....+... . +...+ ++..++.++.+.|...+..+.-+++|+++....++ .+++.|.
T Consensus       281 t~k~d~~~l~k~~~el~vllltGDeSMq-~-L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci-~~v~~~~  357 (604)
T KOG4500|consen  281 TKKTDMLNLFKRIAELDVLLLTGDESMQ-K-LHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICI-QLVQKDF  357 (604)
T ss_pred             cchHHHHHHHHhhhhHhhhhhcCchHHH-H-HhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHH-HHHHHHH
Confidence                  1223334444443433322211 2 34444 89999999999999999999999999998766555 7888999


Q ss_pred             HHHHHHhhcC-----CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc
Q 008827          336 VKLLVQLSKS-----MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN  410 (552)
Q Consensus       336 i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~  410 (552)
                      +..|++.+..     +|..++..++.||.|+....  .+|..+...|..+.++..+....|.++..-++.++-+..+.+.
T Consensus       358 ~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~  435 (604)
T KOG4500|consen  358 LNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEY  435 (604)
T ss_pred             HHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHH
Confidence            9999988754     46778888999999998733  4788899999999999999999999999999999998877542


Q ss_pred             hHHHHHhhcCchHHHHHHHhcccCch-hHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHH
Q 008827          411 SVEYIFAEDGIILDAVGRQLRIASKA-EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRT  489 (552)
Q Consensus       411 ~~~~i~~~~~~~~~~l~~~L~~~~~~-~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~  489 (552)
                      ....+.... ..++.|+.+=.+ ++. .+--.+...+.-+...+. ..+-+..  +|  ..|++..+|.++.+.+-..+.
T Consensus       436 ~a~eL~kn~-~l~ekLv~Wsks-~D~aGv~gESnRll~~lIkHs~-~kdv~~t--vp--ksg~ik~~Vsm~t~~hi~mqn  508 (604)
T KOG4500|consen  436 IACELAKNP-ELFEKLVDWSKS-PDFAGVAGESNRLLLGLIKHSK-YKDVILT--VP--KSGGIKEKVSMFTKNHINMQN  508 (604)
T ss_pred             HHHHHhcCH-HHHHHHHHhhhC-CccchhhhhhhHHHHHHHHhhH-hhhhHhh--cc--ccccHHHHHHHHHHhhHHHhH
Confidence            222222211 156666665555 443 365566666666655422 1221221  11  267789999999999999999


Q ss_pred             HHHHHHHhhcC
Q 008827          490 AAVWAVLNLTC  500 (552)
Q Consensus       490 ~a~~~l~~l~~  500 (552)
                      +|..++.-+..
T Consensus       509 EalVal~~~~~  519 (604)
T KOG4500|consen  509 EALVALLSTES  519 (604)
T ss_pred             HHHHHHHHHHH
Confidence            99888877764

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=3.2e-17  Score=161.69  Aligned_cols=439  Identities=15%  Similarity=0.139  Sum_probs=277.6

Q ss_pred             CchHHHHHhhcC----CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhC
Q 008827           77 GVLKRLTSLLGG----SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNAS  152 (552)
Q Consensus        77 g~i~~L~~lL~~----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~  152 (552)
                      .++..+.++|++    +..+|.++...+.++-. .++.         ..++-.++.-.++.+..+|..|...|.|-.+..
T Consensus        10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~-~pdf---------nnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~   79 (885)
T KOG2023|consen   10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL-FPDF---------NNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGH   79 (885)
T ss_pred             HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc-ccch---------hceeeEEEecccccchhHHHHhhhhHhcccccc
Confidence            355667777874    35789999988888543 3343         334444555567888888999999888866544


Q ss_pred             CCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHH
Q 008827          153 PCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLAL  231 (552)
Q Consensus       153 ~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL  231 (552)
                      ........... +-...++-+. .++-+|......++.+++...-. .   -..++|.|+++|.+++  ....+.|+.||
T Consensus        80 ~~~~~~~~~~y-iKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~-~---wpelLp~L~~~L~s~d--~n~~EgA~~AL  152 (885)
T KOG2023|consen   80 YNSIPSEVLDY-IKSECLHGLGDASPLIRATVGIVITTIASTGGLQ-H---WPELLPQLCELLDSPD--YNTCEGAFGAL  152 (885)
T ss_pred             ccCCChHHHHH-HHHHHHhhccCchHHHHhhhhheeeeeecccccc-c---chhHHHHHHHHhcCCc--ccccchhHHHH
Confidence            32222211111 1122233333 33445655555555555433211 1   1456899999888764  66889999999


Q ss_pred             HHhhcCChhHHHHHHhc----ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHH
Q 008827          232 ADMCSKLECCRSRCLSL----QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA  307 (552)
Q Consensus       232 ~~l~~~~~~~~~~~~~~----~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~  307 (552)
                      ..+|.+..+.-+.-.-.    -.+|.++++.+++++.+|..|..|+-.+.-...+.  -+..-..+++.++.+-.|++++
T Consensus       153 ~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFalanD~~~e  230 (885)
T KOG2023|consen  153 QKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALANDEDPE  230 (885)
T ss_pred             HHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHccCCCHH
Confidence            99998765443321111    27999999999999999999999987764331111  1123357788899988999999


Q ss_pred             HHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHh--hcHHHHHhh
Q 008827          308 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME--LTASLLASL  385 (552)
Q Consensus       308 v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~--~~~~~l~~l  385 (552)
                      ||+..|.++..|....++ |-.-.=.++++.++...++.++.|...|+.....++..  |.++..+...  ..+|.|++-
T Consensus       231 VRk~vC~alv~Llevr~d-kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq--pi~~~~L~p~l~kliPvLl~~  307 (885)
T KOG2023|consen  231 VRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ--PICKEVLQPYLDKLIPVLLSG  307 (885)
T ss_pred             HHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC--cCcHHHHHHHHHHHHHHHHcc
Confidence            999999999999864333 21112247888888889999999999999999888873  3344433321  245555544


Q ss_pred             hcCCCh-------------------hHHHH-----------------------------HHHHHHHhhcCCcchHHHHHh
Q 008827          386 ICDPEP-------------------SVQEQ-----------------------------ALALVRNLVDGRINSVEYIFA  417 (552)
Q Consensus       386 l~~~~~-------------------~v~~~-----------------------------a~~~L~~l~~~~~~~~~~i~~  417 (552)
                      +.-++.                   +++-.                             .-|-||..+...-+....++.
T Consensus       308 M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~  387 (885)
T KOG2023|consen  308 MVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG  387 (885)
T ss_pred             CccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhH
Confidence            321110                   00000                             001122211111111112222


Q ss_pred             hc--CchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHH
Q 008827          418 ED--GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV  495 (552)
Q Consensus       418 ~~--~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l  495 (552)
                      +.  ..+++++-..|.+ ..+.+++++..+++.+|.|+-+.   ++.     +-..++|+++.+|.+..+-||..+||+|
T Consensus       388 ~elL~~l~PlLk~~L~~-~~W~vrEagvLAlGAIAEGcM~g---~~p-----~LpeLip~l~~~L~DKkplVRsITCWTL  458 (885)
T KOG2023|consen  388 DELLPILLPLLKEHLSS-EEWKVREAGVLALGAIAEGCMQG---FVP-----HLPELIPFLLSLLDDKKPLVRSITCWTL  458 (885)
T ss_pred             HHHHHHHHHHHHHHcCc-chhhhhhhhHHHHHHHHHHHhhh---ccc-----chHHHHHHHHHHhccCccceeeeeeeeH
Confidence            22  0145666666666 88999999999999999986433   332     1246889999999999999999999999


Q ss_pred             HhhcC-CCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh-cCCC
Q 008827          496 LNLTC-SSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF-DDSL  551 (552)
Q Consensus       496 ~~l~~-~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~-~~~~  551 (552)
                      ++++. ...+.   +.+.+.  -++..|.+.+-|++++|+|+|+.|+..+.+- +++|
T Consensus       459 sRys~wv~~~~---~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eL  511 (885)
T KOG2023|consen  459 SRYSKWVVQDS---RDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEEL  511 (885)
T ss_pred             hhhhhhHhcCC---hHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchh
Confidence            99973 11112   222221  1245555555688999999999999988775 3444

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.75  E-value=1.1e-15  Score=155.64  Aligned_cols=399  Identities=15%  Similarity=0.159  Sum_probs=283.6

Q ss_pred             cccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhh-HHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhh
Q 008827           34 QEENMEFLLSLLNNESENVSGLGASIISHSCKTSLE-QKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVV  111 (552)
Q Consensus        34 ~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~-~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~  111 (552)
                      +...+|..++.|.+.++.+|-.|+..+.++|..++. |..+.+.|+|+.|+.+|.+ ...|+.+|+.+|.+|.+......
T Consensus       231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~  310 (717)
T KOG1048|consen  231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS  310 (717)
T ss_pred             cccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence            334678899999999999999999999999987765 7788999999999999998 78999999999999998765522


Q ss_pred             hhhccccCCccHHHHHHHHhc-CChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-------C--------
Q 008827          112 SQFVGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-------D--------  175 (552)
Q Consensus       112 ~~~~~~~~~~~l~~l~~ll~~-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-------~--------  175 (552)
                      +.+. +...++++.++++++. .|.++|......|+||+..+.   .+..+....++.|-...-       +        
T Consensus       311 NKla-i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~---lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~  386 (717)
T KOG1048|consen  311 NKLA-IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA---LKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAE  386 (717)
T ss_pred             cchh-hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH---HHHHHHHHHHHHHHHhhcccccccCCCCcccccc
Confidence            2221 1236789999999985 899999999999999998732   333444556777655541       1        


Q ss_pred             CCchhchHHHHHHHhhcCCHHHHHHHHHh-CcHHHHHHhhhc----CCCChhhHHHHHHHHHHhhcCCh-----hHHHHH
Q 008827          176 PGRVGDEASFAFSSLIAEKEDMQKLAFEV-NGVDKLYNHLQK----GSLHPRRFEGILLALADMCSKLE-----CCRSRC  245 (552)
Q Consensus       176 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~L~~----~~~~~~~~~~a~~aL~~l~~~~~-----~~~~~~  245 (552)
                      +.++-..++++|.|+.+...+.++.+.++ |.|..|+..++.    ...+.+..++++..+.++.-.-+     ..+...
T Consensus       387 ~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~  466 (717)
T KOG1048|consen  387 DSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVL  466 (717)
T ss_pred             cceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHh
Confidence            12456789999999999888888888875 557888876663    23456678999999999864211     111111


Q ss_pred             HhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccc--------------hhhhccCcHHHHHHhhc-CCCHHHHH
Q 008827          246 LSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA--------------GSFMNETIVIPLVRLLD-DTSTAVQV  310 (552)
Q Consensus       246 ~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~--------------~~~~~~~~i~~Lv~lL~-~~~~~v~~  310 (552)
                      ...+.      ....+.+.   ...+|+..-.+.....+.              ..+....++.+-..+|. +.++.+.+
T Consensus       467 ~~~~~------~~~~~~~~---~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlE  537 (717)
T KOG1048|consen  467 ANIAR------LPGVGPPA---ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLE  537 (717)
T ss_pred             hcccc------cccCCCcc---cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHH
Confidence            11110      00011111   223333333222111000              00223345555555565 56889999


Q ss_pred             HHHHHHHHhhcCCchhH----HHH-HhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhh
Q 008827          311 AALGAISNIVVDFTTRR----STF-IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL  385 (552)
Q Consensus       311 ~a~~aL~nl~~~~~~~~----~~~-~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l  385 (552)
                      +++++|-|++.+.....    ..+ ....+++.+++++..+++.+...++.+|.||+.+  +.+| +++...+++-|++.
T Consensus       538 asaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d--~rnk-~ligk~a~~~lv~~  614 (717)
T KOG1048|consen  538 ASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD--IRNK-ELIGKYAIPDLVRC  614 (717)
T ss_pred             HhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC--chhh-hhhhcchHHHHHHh
Confidence            99999999998765433    233 5678999999999999999999999999999873  3344 44557889999999


Q ss_pred             hcCC------ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhc
Q 008827          386 ICDP------EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVA  450 (552)
Q Consensus       386 l~~~------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la  450 (552)
                      |.+.      ++++...++.+|.|+...+......+++.+|  ++.|+-+..+..+++..+.+...|..|=
T Consensus       615 Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g--~~kL~~I~~s~~S~k~~kaAs~vL~~lW  683 (717)
T KOG1048|consen  615 LPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKG--IPKLRLISKSQHSPKEFKAASSVLDVLW  683 (717)
T ss_pred             CcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccC--hHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence            9643      3678889999999999888888888998886  5777666666456677777777776654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.74  E-value=3.6e-16  Score=159.08  Aligned_cols=363  Identities=17%  Similarity=0.115  Sum_probs=272.3

Q ss_pred             ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHH--H
Q 008827          121 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKED--M  197 (552)
Q Consensus       121 ~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~--~  197 (552)
                      -.++..+.++.+.++.+|..|+..+..++..+. ..+..+.+.|+|+.|+.+|+ ...+|+..|+++|.||..+...  +
T Consensus       233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~-~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDN-KIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             cccHHHHHHHhccChhhhHHHHHHHHHHHhhhH-HHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence            357788999999999999999999999987554 35667888999999999999 5578999999999999976655  6


Q ss_pred             HHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHh-cC-------------CCCH
Q 008827          198 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDA-LA-------------HDSS  263 (552)
Q Consensus       198 ~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~-L~-------------~~~~  263 (552)
                      +-.+.+++|++.+++.|+.. -|.++++.+...|+||++. +.++..++... ++.+..- +.             ....
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t-~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~~  388 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHT-QDDEVRELITGILWNLSSN-DALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAEDS  388 (717)
T ss_pred             chhhhhcCChHHHHHHHHhh-cchHHHHHHHHHHhcccch-hHHHHHHHHHH-HHHHHHhhcccccccCCCCcccccccc
Confidence            66788999999999999876 3578999999999999875 55665555432 2222221 11             1135


Q ss_pred             HHHHHHHHHHHHhhcccccccchhhh-ccCcHHHHHHhhc------CCCHHHHHHHHHHHHHhhcCCc------------
Q 008827          264 DVRSAACMCLRSVSRSIKNLSAGSFM-NETIVIPLVRLLD------DTSTAVQVAALGAISNIVVDFT------------  324 (552)
Q Consensus       264 ~v~~~a~~~L~~ls~~~~~~~~~~~~-~~~~i~~Lv~lL~------~~~~~v~~~a~~aL~nl~~~~~------------  324 (552)
                      .+-..+..||+|++.....-|+. +. .+|.|..|+..++      +.|..-.++|+..+.|+.....            
T Consensus       389 ~vf~n~tgcLRNlSs~~~eaR~~-mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~  467 (717)
T KOG1048|consen  389 TVFRNVTGCLRNLSSAGQEAREQ-MRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA  467 (717)
T ss_pred             eeeehhhhhhccccchhHHHHHH-HhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence            78899999999998865666655 54 4789999999886      3466778899999988865322            


Q ss_pred             -------------------hhHHH----------------------HHhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhc
Q 008827          325 -------------------TRRST----------------------FIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLI  362 (552)
Q Consensus       325 -------------------~~~~~----------------------~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~  362 (552)
                                         ..+++                      +....++.....++. +.+..+.++++.+|-|++
T Consensus       468 ~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNlt  547 (717)
T KOG1048|consen  468 NIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLT  547 (717)
T ss_pred             cccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhh
Confidence                               00111                      001124444344444 457889999999999998


Q ss_pred             ccCCh---HhHHHH-HHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCc---
Q 008827          363 FLAED---KCKEEI-FMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK---  435 (552)
Q Consensus       363 ~~~~~---~~~~~i-~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~---  435 (552)
                      -+..+   ..+..+ ..+.+.++|+++++.++..+...+..+|+|++.+.  ..+.++...  +++-|++.|.++..   
T Consensus       548 A~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rnk~ligk~--a~~~lv~~Lp~~~~~~~  623 (717)
T KOG1048|consen  548 AGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RNKELIGKY--AIPDLVRCLPGSGPSTS  623 (717)
T ss_pred             ccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hhhhhhhcc--hHHHHHHhCcCCCCCcC
Confidence            64332   234444 67889999999999999999999999999999764  344555533  78889888876433   


Q ss_pred             --hhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCC-hhHHHHHHHHHHhhc
Q 008827          436 --AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSND-SRLRTAAVWAVLNLT  499 (552)
Q Consensus       436 --~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~-~~~~~~a~~~l~~l~  499 (552)
                        +++...+|++|.|+...+...-..+++       .+.++.|+.+.++.. +.+-++|...+..|.
T Consensus       624 ~sedtv~~vc~tl~niv~~~~~nAkdl~~-------~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW  683 (717)
T KOG1048|consen  624 LSEDTVRAVCHTLNNIVRKNVLNAKDLLE-------IKGIPKLRLISKSQHSPKEFKAASSVLDVLW  683 (717)
T ss_pred             chHHHHHHHHHhHHHHHHHhHHHHHHHHh-------ccChHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence              788899999999999766655666665       677899999988754 477788888887776

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=1.1e-15  Score=150.85  Aligned_cols=480  Identities=15%  Similarity=0.162  Sum_probs=284.6

Q ss_pred             ccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHH---HHh--cCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCCh
Q 008827           35 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKL---LFD--AGVLKRLTSLLGG-SLIQRDASLESIATIFKNNP  108 (552)
Q Consensus        35 ~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~---l~~--~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~  108 (552)
                      ++.+|.|..+|.+++...++-|.+.|.++|....+.-.   ..+  .-.+|.++++.++ ++++|..|+.|+-.+.....
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence            67899999999999999999999999999977654221   111  2357888888887 78999999999987654332


Q ss_pred             h-hhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHH
Q 008827          109 E-VVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFA  186 (552)
Q Consensus       109 ~-~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~  186 (552)
                      . .-..+     ...+..++.+.+|++++||..-...|..+....+++...  --.++++.++..-++ +..|..+|+.-
T Consensus       207 qal~~~i-----D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p--hl~~IveyML~~tqd~dE~VALEACEF  279 (885)
T KOG2023|consen  207 QALYVHI-----DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP--HLDNIVEYMLQRTQDVDENVALEACEF  279 (885)
T ss_pred             HHHHHHH-----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc--chHHHHHHHHHHccCcchhHHHHHHHH
Confidence            2 21122     356777888999999999999999999888765432111  114677777776664 34577777766


Q ss_pred             HHHhhcCCHHHHHHHHH--hCcHHHHHH----------------------------------------------------
Q 008827          187 FSSLIAEKEDMQKLAFE--VNGVDKLYN----------------------------------------------------  212 (552)
Q Consensus       187 L~~l~~~~~~~~~~~~~--~~~i~~L~~----------------------------------------------------  212 (552)
                      ...++... -++.....  ...+|.|++                                                    
T Consensus       280 wla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddD  358 (885)
T KOG2023|consen  280 WLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDD  358 (885)
T ss_pred             HHHHhcCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccc
Confidence            65555432 11111110  122333322                                                    


Q ss_pred             --------------------------------------hhhcC--CCChhhHHHHHHHHHHhhcCChhHHHHHHhc--cc
Q 008827          213 --------------------------------------HLQKG--SLHPRRFEGILLALADMCSKLECCRSRCLSL--QV  250 (552)
Q Consensus       213 --------------------------------------~L~~~--~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~--~~  250 (552)
                                                            +|+..  +.+..+||+++.+++.++.   .+-+-++..  .+
T Consensus       359 e~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAE---GcM~g~~p~LpeL  435 (885)
T KOG2023|consen  359 EDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAE---GCMQGFVPHLPEL  435 (885)
T ss_pred             ccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHH---HHhhhcccchHHH
Confidence                                                  11110  0112356777777777763   333333332  27


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 008827          251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF  330 (552)
Q Consensus       251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  330 (552)
                      +|.++++|.+..+-||.-+||+|...+...-+..+. -.-..++..+++.+-|++..||++|+.|++.+-.+-.+.--..
T Consensus       436 ip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~-~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~  514 (885)
T KOG2023|consen  436 IPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRD-EYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPY  514 (885)
T ss_pred             HHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChH-hhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHH
Confidence            889999999999999999999999997653222221 1222444555555558899999999999987765433211011


Q ss_pred             HhhCcHHHHHHhh---cCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHH---hhhcCCC--------------
Q 008827          331 IRLGGVKLLVQLS---KSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLA---SLICDPE--------------  390 (552)
Q Consensus       331 ~~~g~i~~L~~ll---~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~---~ll~~~~--------------  390 (552)
                      . .-++..|+...   +..|-.+-.-|+++|+.=+.+.  -++...++- .+|.|+   .++.++|              
T Consensus       515 l-~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~--Ln~~~Yiqi-LmPPLi~KW~~lsd~DKdLfPLLEClSsia  590 (885)
T KOG2023|consen  515 L-EYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHA--LNKPAYIQI-LMPPLIEKWELLSDSDKDLFPLLECLSSIA  590 (885)
T ss_pred             H-HHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHh--cCcHHHHHH-hccHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence            1 11222222222   1234444555666666544311  122222222 122222   1233332              


Q ss_pred             -----------hhHHHHHHHHHHHh-------------------------------hcCCcchHHHHHhhcCchHHHHHH
Q 008827          391 -----------PSVQEQALALVRNL-------------------------------VDGRINSVEYIFAEDGIILDAVGR  428 (552)
Q Consensus       391 -----------~~v~~~a~~~L~~l-------------------------------~~~~~~~~~~i~~~~~~~~~~l~~  428 (552)
                                 +.+-+.+++++.+.                               +.+-..+++.++...+ ++.++..
T Consensus       591 ~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~sn-l~~lll~  669 (885)
T KOG2023|consen  591 SALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSN-LLDLLLQ  669 (885)
T ss_pred             HHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhcc-HHHHHHH
Confidence                       23444455444432                               2222222222222222 5566666


Q ss_pred             HhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHH
Q 008827          429 QLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSG  508 (552)
Q Consensus       429 ~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~  508 (552)
                      -+++ +-++||.++...|+.++..+..+...-+        .++++.+-..+...+..+..+|+|+++.++......+..
T Consensus       670 C~~D-~~peVRQS~FALLGDltk~c~~~v~p~~--------~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~  740 (885)
T KOG2023|consen  670 CLQD-EVPEVRQSAFALLGDLTKACFEHVIPNL--------ADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQ  740 (885)
T ss_pred             Hhcc-CChHHHHHHHHHHHHHHHHHHHhccchH--------HHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhh
Confidence            6666 7899999999999999986655544444        467777777787788889999999999999633222332


Q ss_pred             HHHHHHHCCcHHHHHhhhcCCC--ccHHHHHHHHHHHHh
Q 008827          509 RLVKLHDAGIVSHVKNMVNDPC--LDVKLRVKTALEQFN  545 (552)
Q Consensus       509 ~~~~l~~~g~~~~L~~ll~~~~--~~v~~~a~~al~~~~  545 (552)
                      ...     .++..|..+++.++  ..+-|..+..++++.
T Consensus       741 ~v~-----~vl~~L~~iin~~~~~~tllENtAITIGrLg  774 (885)
T KOG2023|consen  741 YVS-----PVLEDLITIINRQNTPKTLLENTAITIGRLG  774 (885)
T ss_pred             HHH-----HHHHHHHHHhcccCchHHHHHhhhhhhhhhh
Confidence            222     23566666655332  346666666666553

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=1.9e-15  Score=138.15  Aligned_cols=304  Identities=16%  Similarity=0.190  Sum_probs=246.6

Q ss_pred             hhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhc
Q 008827          179 VGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL  258 (552)
Q Consensus       179 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L  258 (552)
                      +..++..+|..+....|.    .+++.++..++.+|.....+.++-...+..+..-|-.+|.+|+.+.+.+++|.+.+.|
T Consensus       123 ~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l  198 (461)
T KOG4199|consen  123 VLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVL  198 (461)
T ss_pred             HHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHH
Confidence            566777888777766655    5688999999999987766677777888888888888999999999999999999777


Q ss_pred             C-CCCHHHHHHHHHHHHHhhcccccccch---------hhhccCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhH
Q 008827          259 A-HDSSDVRSAACMCLRSVSRSIKNLSAG---------SFMNETIVIPLVRLLDD-TSTAVQVAALGAISNIVVDFTTRR  327 (552)
Q Consensus       259 ~-~~~~~v~~~a~~~L~~ls~~~~~~~~~---------~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~  327 (552)
                      . ++..++.+..+++++.|... +++|..         .|...|++..|+..++. -+|.+...++.+|..++... +..
T Consensus       199 ~~~gk~~~VRel~~a~r~l~~d-DDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~-E~C  276 (461)
T KOG4199|consen  199 NREGKTRTVRELYDAIRALLTD-DDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRD-EIC  276 (461)
T ss_pred             cccCccHHHHHHHHHHHHhcCC-CceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHH-HHH
Confidence            6 45557889999999999765 333321         15677889999999973 47899999999999999654 455


Q ss_pred             HHHHhhCcHHHHHHhhcCCC-HHHH---HHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc--CCChhHHHHHHHHH
Q 008827          328 STFIRLGGVKLLVQLSKSMD-STIR---LNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALV  401 (552)
Q Consensus       328 ~~~~~~g~i~~L~~ll~~~~-~~v~---~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~--~~~~~v~~~a~~~L  401 (552)
                      +.+.+.|++..+++.+.+.+ ...|   ..++..|..++.+.  +.|..+++.|+.+.++.++.  ++||.|.++++.++
T Consensus       277 ~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D--svKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i  354 (461)
T KOG4199|consen  277 KSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD--SVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAII  354 (461)
T ss_pred             HHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC--chHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHH
Confidence            68999999999999999854 3334   56788888888744  48999999999999999874  67899999999999


Q ss_pred             HHhhcCCcchHHHHHhhcCchHHHHHHHhcccCc-hhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhh
Q 008827          402 RNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK-AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL  480 (552)
Q Consensus       402 ~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~-~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL  480 (552)
                      .-++...|++...+++.|  .-...++-|.-+|. ..++.++||.+.|++..+..++..++.       .| +..|+..-
T Consensus       355 ~~l~LR~pdhsa~~ie~G--~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~-------~G-iE~Li~~A  424 (461)
T KOG4199|consen  355 SILCLRSPDHSAKAIEAG--AADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA-------NG-IEKLIRTA  424 (461)
T ss_pred             HHHHhcCcchHHHHHhcc--hHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh-------cc-HHHHHHHH
Confidence            999999999999999887  44566666665464 569999999999999988878887775       44 58888888


Q ss_pred             cCCChhHHHHHHHHHHhhcC
Q 008827          481 QSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       481 ~~~~~~~~~~a~~~l~~l~~  500 (552)
                      ++.++..+..|-.+|..|.+
T Consensus       425 ~~~h~tce~~akaALRDLGc  444 (461)
T KOG4199|consen  425 KANHETCEAAAKAALRDLGC  444 (461)
T ss_pred             HhcCccHHHHHHHHHHhcCc
Confidence            88899999999999998875

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.73  E-value=2.7e-14  Score=151.19  Aligned_cols=462  Identities=18%  Similarity=0.202  Sum_probs=312.5

Q ss_pred             cHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhh
Q 008827            7 YMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLL   86 (552)
Q Consensus         7 ~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL   86 (552)
                      +..-...+++-|..++......      ..+.+.++.++.+++...+..+.-.+..+...+.....+    ++..+.+-|
T Consensus        19 ~~~~~~~~l~kli~~~~~G~~~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l----~~n~l~kdl   88 (526)
T PF01602_consen   19 DISKKKEALKKLIYLMMLGYDI------SFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL----IINSLQKDL   88 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHTT---------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH----HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCCC------chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH----HHHHHHHhh
Confidence            3344445555555554443222      156788888998888888888888888877655543322    445566667


Q ss_pred             cC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhH
Q 008827           87 GG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKL  165 (552)
Q Consensus        87 ~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~  165 (552)
                      .+ ++.+|..|++++++++  +++..        ...++.+.+++.|+++.||..|+.++..+....++.    +... .
T Consensus        89 ~~~n~~~~~lAL~~l~~i~--~~~~~--------~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~----~~~~-~  153 (526)
T PF01602_consen   89 NSPNPYIRGLALRTLSNIR--TPEMA--------EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL----VEDE-L  153 (526)
T ss_dssp             CSSSHHHHHHHHHHHHHH---SHHHH--------HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC----HHGG-H
T ss_pred             cCCCHHHHHHHHhhhhhhc--ccchh--------hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH----HHHH-H
Confidence            66 6789999999999987  34443        234677889999999999999999999999875542    2223 7


Q ss_pred             HHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHH
Q 008827          166 INNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSR  244 (552)
Q Consensus       166 i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~  244 (552)
                      ++.+.+++.+ ++.|+..|..++..+ ..++.... -.-...++.|.+++..  .+|-.+..+++.+..++..++.....
T Consensus       154 ~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~--~~~~~q~~il~~l~~~~~~~~~~~~~  229 (526)
T PF01602_consen  154 IPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSD--PDPWLQIKILRLLRRYAPMEPEDADK  229 (526)
T ss_dssp             HHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTC--CSHHHHHHHHHHHTTSTSSSHHHHHH
T ss_pred             HHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccc--cchHHHHHHHHHHHhcccCChhhhhH
Confidence            9999999984 467888888888888 33333211 0111223344443333  35778889999999988765544321


Q ss_pred             HHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 008827          245 CLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT  324 (552)
Q Consensus       245 ~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~  324 (552)
                         ...++.+..++++.++.|...++.++..+.....       ....++++|.+++.+++++++..++.+|..++....
T Consensus       230 ---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~  299 (526)
T PF01602_consen  230 ---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP  299 (526)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH
T ss_pred             ---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc
Confidence               4578899999999999999999999998876522       234678999999999999999999999999987552


Q ss_pred             hhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhh-cCCChhHHHHHHHHHHH
Q 008827          325 TRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI-CDPEPSVQEQALALVRN  403 (552)
Q Consensus       325 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll-~~~~~~v~~~a~~~L~~  403 (552)
                          ..+. .....+..+..+++..+|..++..|.+++.   +.+-..     .++.+...+ ..++++++..++..++.
T Consensus       300 ----~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~---~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~  366 (526)
T PF01602_consen  300 ----PAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLAN---ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGD  366 (526)
T ss_dssp             ----HHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH-----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred             ----hhhh-hhhhhhheecCCCChhHHHHHHHHHhhccc---ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHH
Confidence                2222 333334344458899999999999999975   223333     455666777 45688899999999999


Q ss_pred             hhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC-
Q 008827          404 LVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS-  482 (552)
Q Consensus       404 l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~-  482 (552)
                      ++...+...++       .++.+.+++.. .++.+...+...+.++....+..+..+            +..+++.+.+ 
T Consensus       367 la~~~~~~~~~-------~v~~l~~ll~~-~~~~~~~~~~~~i~~ll~~~~~~~~~~------------l~~L~~~l~~~  426 (526)
T PF01602_consen  367 LAEKFPPDAEW-------YVDTLLKLLEI-SGDYVSNEIINVIRDLLSNNPELREKI------------LKKLIELLEDI  426 (526)
T ss_dssp             HHHHHGSSHHH-------HHHHHHHHHHC-TGGGCHCHHHHHHHHHHHHSTTTHHHH------------HHHHHHHHTSS
T ss_pred             HHhccCchHHH-------HHHHHHHhhhh-ccccccchHHHHHHHHhhcChhhhHHH------------HHHHHHHHHHh
Confidence            98654443333       46677777776 666777778888888776555444433            4577887776 


Q ss_pred             CChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          483 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       483 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      .++.++..++|+++.++.... .+. ...     ..+..+.+...+.++.+|-.+..++..+...
T Consensus       427 ~~~~~~~~~~wilGEy~~~~~-~~~-~~~-----~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~  484 (526)
T PF01602_consen  427 SSPEALAAAIWILGEYGELIE-NTE-SAP-----DILRSLIENFIEESPEVKLQILTALAKLFKR  484 (526)
T ss_dssp             SSHHHHHHHHHHHHHHCHHHT-TTT-HHH-----HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhhcccCCccc-ccc-cHH-----HHHHHHHHhhccccHHHHHHHHHHHHHHHhh
Confidence            677899999999999984111 100 111     1233344443444566777776766665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=6.8e-14  Score=147.59  Aligned_cols=423  Identities=14%  Similarity=0.107  Sum_probs=281.9

Q ss_pred             cCCCCcchHHHHHHHHhhcCChhhHHHHHhcCc---hHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCc
Q 008827           46 NNESENVSGLGASIISHSCKTSLEQKLLFDAGV---LKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGR  121 (552)
Q Consensus        46 ~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~---i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~  121 (552)
                      +.+.++++...+.+++.++++.-     -+ +|   ++.|++..++ ++..|+.|+..|..+...-.+.        ..+
T Consensus        90 ~E~~~~vr~k~~dviAeia~~~l-----~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~--------~~~  155 (1075)
T KOG2171|consen   90 SETEPSVRHKLADVIAEIARNDL-----PE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNT--------LQP  155 (1075)
T ss_pred             hccchHHHHHHHHHHHHHHHhcc-----cc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc--------cch
Confidence            34567889999999988875422     22 33   3444555555 5789999999999976432222        123


Q ss_pred             cHHHHHH----HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-----CCchhchHHHHHHHhhc
Q 008827          122 TLSCIIE----IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-----PGRVGDEASFAFSSLIA  192 (552)
Q Consensus       122 ~l~~l~~----ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-----~~~v~~~a~~~L~~l~~  192 (552)
                      .++.+..    -+.+.+..||..|++++..++...+........-...+|.++..+.+     +.+.-..+..+|..++.
T Consensus       156 ~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e  235 (1075)
T KOG2171|consen  156 HLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE  235 (1075)
T ss_pred             hHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh
Confidence            3333333    44566666999999999999886642111112224578878777762     23345677788888887


Q ss_pred             CCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHh--cccHHHHHHhcCCCC--------
Q 008827          193 EKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS--LQVLKLVVDALAHDS--------  262 (552)
Q Consensus       193 ~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~--~~~l~~lv~~L~~~~--------  262 (552)
                      ..+.+-+.... ..+..-..+..+...+..+|..|+..|..++..-+...+....  ...++.++.++.+..        
T Consensus       236 ~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~  314 (1075)
T KOG2171|consen  236 SEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE  314 (1075)
T ss_pred             hchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence            77765443332 2345555555665567789999999999988764443332222  236777777775311        


Q ss_pred             --------HHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhC
Q 008827          263 --------SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG  334 (552)
Q Consensus       263 --------~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g  334 (552)
                              ..-...|..+|-.++.+.+.   . .+-..+++.+-.+++++++.-|.+|..+|+.++.++.+.....+ ..
T Consensus       315 d~~ded~~~~~~~~A~~~lDrlA~~L~g---~-~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~  389 (1075)
T KOG2171|consen  315 DDLDEDDEETPYRAAEQALDRLALHLGG---K-QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PK  389 (1075)
T ss_pred             cccccccccCcHHHHHHHHHHHHhcCCh---h-hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HH
Confidence                    12456677788888776321   1 23344556666677899999999999999999998876544322 36


Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC-CChhHHHHHHHHHHHhhcCCcc-hH
Q 008827          335 GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-PEPSVQEQALALVRNLVDGRIN-SV  412 (552)
Q Consensus       335 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~-~~  412 (552)
                      +++..+..+.++++.||..|+.+++.++.+-.|+..+. .++..++.|+..+++ .++.++..|..++-|++...+. .+
T Consensus       390 Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l  468 (1075)
T KOG2171|consen  390 ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL  468 (1075)
T ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH
Confidence            78888899999999999999999999988766654433 344567778888876 4568999999999999876543 22


Q ss_pred             HHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCC----hhHH
Q 008827          413 EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSND----SRLR  488 (552)
Q Consensus       413 ~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~----~~~~  488 (552)
                      ...+..   +++.....|..++++.+++.+..+|+..|...........        ..++|.|..+|+..+    ..+|
T Consensus       469 ~pYLd~---lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~--------d~~Mp~L~~~L~n~~~~d~r~Lr  537 (1075)
T KOG2171|consen  469 EPYLDG---LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYF--------DRLMPLLKNFLQNADDKDLRELR  537 (1075)
T ss_pred             HHHHHH---HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHH--------HHHHHHHHHHHhCCCchhhHHHH
Confidence            333322   5664444444448999999999999999975443344444        356688888888755    3466


Q ss_pred             HHHHHHHHhhcC
Q 008827          489 TAAVWAVLNLTC  500 (552)
Q Consensus       489 ~~a~~~l~~l~~  500 (552)
                      -....+++-++.
T Consensus       538 gktmEcisli~~  549 (1075)
T KOG2171|consen  538 GKTMECLSLIAR  549 (1075)
T ss_pred             hhHHHHHHHHHH
Confidence            666666666653

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.72  E-value=2e-14  Score=142.72  Aligned_cols=483  Identities=16%  Similarity=0.083  Sum_probs=320.5

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCc--chHHHHHHHHh-hcCChhhHHHHHhcCc
Q 008827            2 PLLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESEN--VSGLGASIISH-SCKTSLEQKLLFDAGV   78 (552)
Q Consensus         2 ~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~--~~~~a~~~l~~-~~~~~~~~~~l~~~g~   78 (552)
                      ||...++..+..+.....++..+...+|+..++-++++.+..+++..++.  .+...+.++-. .++.......+.+.+.
T Consensus        17 ~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~   96 (678)
T KOG1293|consen   17 RLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIE   96 (678)
T ss_pred             hhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhh
Confidence            56677888888999999999999888877788999999999999865544  44333333333 4556666788899999


Q ss_pred             hHHHHHhhcC-C-HHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcc
Q 008827           79 LKRLTSLLGG-S-LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYL  156 (552)
Q Consensus        79 i~~L~~lL~~-~-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~  156 (552)
                      .+.|+++|.. + ..+++..++++..+.+.++.......     ....+                               
T Consensus        97 ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s-----~~~~s-------------------------------  140 (678)
T KOG1293|consen   97 LLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMS-----LHLKS-------------------------------  140 (678)
T ss_pred             HHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchh-----hhHHH-------------------------------
Confidence            9999999986 4 68999999999998766544321110     00011                               


Q ss_pred             hhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHH---
Q 008827          157 QDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALA---  232 (552)
Q Consensus       157 ~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~---  232 (552)
                              +++.+..++. +...+..--+ .+...++..+..+....++|..+++.-++...  +...|.+|+..+.   
T Consensus       141 --------Ii~~~s~l~s~~lk~~~~l~~-~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~--s~~~RlaaL~~~sr~~  209 (678)
T KOG1293|consen  141 --------IIVKFSLLYSIELKYISRLDV-SRAAHLSSTKDHQLILCNAGILEKINILLMYL--SSKLRLAALLCLSRGD  209 (678)
T ss_pred             --------HHHHHHHHHhhhhhhhhhhhh-hhhccccccchhhheeccccchhhHHHHHHhh--hHHHHHHHHHHhhccc
Confidence                    1111111111 0000000000 11112223334555666777777766555443  3678999999999   


Q ss_pred             HhhcCChhHHH----HHHhcccHH--HHHHhcCCCCHHHHHHHHHHHHHhhcccccc----cchhhhccC--cH--HHHH
Q 008827          233 DMCSKLECCRS----RCLSLQVLK--LVVDALAHDSSDVRSAACMCLRSVSRSIKNL----SAGSFMNET--IV--IPLV  298 (552)
Q Consensus       233 ~l~~~~~~~~~----~~~~~~~l~--~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~----~~~~~~~~~--~i--~~Lv  298 (552)
                      .+..+++....    ...+.|+.+  .+.+++++++...+..++.++..+-+...+.    ...++.+.|  .+  -...
T Consensus       210 ~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i  289 (678)
T KOG1293|consen  210 RILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCI  289 (678)
T ss_pred             eeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhh
Confidence            66655554432    233456666  5667778889888999999988886543111    011123333  11  1233


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC------CCHHHHHHHH---HHHHHhcccCChHh
Q 008827          299 RLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS------MDSTIRLNAL---RALRNLIFLAEDKC  369 (552)
Q Consensus       299 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~v~~~a~---~aL~~l~~~~~~~~  369 (552)
                      .++.++.......++...+.++...+......++...++...+++..      ..++.|.-++   ..+..++++.+...
T Consensus       290 ~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~  369 (678)
T KOG1293|consen  290 VLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISL  369 (678)
T ss_pred             eeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhH
Confidence            34456655555666666666665445555567777777777777543      3444444333   34445566555667


Q ss_pred             HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc---CchHHHHHHHhcccCchhHHHHHHHHH
Q 008827          370 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAED---GIILDAVGRQLRIASKAEIEIQGMYVL  446 (552)
Q Consensus       370 ~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~---~~~~~~l~~~L~~~~~~~v~~~a~~~L  446 (552)
                      ++++.+......+..+....|......++-.+.++...-     +.+..|   .-+.+.+++++.. |...|+..++++|
T Consensus       370 ~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV-----~aL~tg~~~~dv~~plvqll~d-p~~~i~~~~lgai  443 (678)
T KOG1293|consen  370 KKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSV-----SALRTGLKRNDVAQPLVQLLMD-PEIMIMGITLGAI  443 (678)
T ss_pred             HHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHH-----HHHHcCCccchhHHHHHHHhhC-cchhHHHHHHHHH
Confidence            889999888888888888899999999998888876431     111111   0167888888866 8889999999999


Q ss_pred             HhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhh
Q 008827          447 GNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMV  526 (552)
Q Consensus       447 ~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll  526 (552)
                      .|+.-.....+..+++       .|++..+..++.+.++.+|..+.|+|.++.++.+   .+....+...=.-..|..+.
T Consensus       444 ~NlVmefs~~kskfl~-------~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d---e~~k~~~~~ki~a~~i~~l~  513 (678)
T KOG1293|consen  444 CNLVMEFSNLKSKFLR-------NNGIDILESMLTDPDFNSRANSLWVLRHLMFNCD---EEEKFQLLAKIPANLILDLI  513 (678)
T ss_pred             HHHHhhcccHHHHHHH-------cCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcch---HHHHHHHHHHhhHHHHHHHH
Confidence            9999877777888887       7999999999999999999999999999998532   22233333222335677788


Q ss_pred             cCCCccHHHHHHHHHHHHhhh
Q 008827          527 NDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       527 ~~~~~~v~~~a~~al~~~~~~  547 (552)
                      +|++..|+|.+-.-++++.+-
T Consensus       514 nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  514 NDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             hCCCHHHHHHHHHHHHHhhcC
Confidence            999999999999888888764

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1e-13  Score=146.36  Aligned_cols=469  Identities=15%  Similarity=0.126  Sum_probs=312.5

Q ss_pred             HHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 008827           39 EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVG  116 (552)
Q Consensus        39 ~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~  116 (552)
                      ..|+.-|-++|-.++..|-+.+.+......         ..+.|..++.+  ++.+|.-|+.-+++++..   .+..+-.
T Consensus         7 ~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~---~w~~l~~   74 (1075)
T KOG2171|consen    7 EQLLQQLLSPDNEVRRQAEEALETLAKTEP---------LLPALAHILATSADPQVRQLAAVLLRKLLTK---HWSRLSA   74 (1075)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHH---HhhcCCH
Confidence            344555556788889999998888765332         67788888875  578999888888888753   3333321


Q ss_pred             ccCCccHHHHHH-HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCC
Q 008827          117 PDTGRTLSCIIE-IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEK  194 (552)
Q Consensus       117 ~~~~~~l~~l~~-ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~  194 (552)
                      ......-..++. ..+...+.+|..-+..+..+++..-    +. -+.+.++.|.+..+ .++..|+.|..+|+.+...-
T Consensus        75 e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l----~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~  149 (1075)
T KOG2171|consen   75 EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDL----PE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETF  149 (1075)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc----cc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhh
Confidence            111233444555 4457888999999999999988542    22 56788888888887 45778999999999887532


Q ss_pred             HHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCCh---hHHHHHHhcccHHHHHHh----cCCCCHHHHH
Q 008827          195 EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE---CCRSRCLSLQVLKLVVDA----LAHDSSDVRS  267 (552)
Q Consensus       195 ~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~---~~~~~~~~~~~l~~lv~~----L~~~~~~v~~  267 (552)
                      .+... -+-....+.+.+.+.+++ ++ +|-.++++++..+...+   ..+..+.  ..+|.++..    +..++...-.
T Consensus       150 ~~~~~-~~~~~l~~lf~q~~~d~s-~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~  224 (1075)
T KOG2171|consen  150 GNTLQ-PHLDDLLRLFSQTMTDPS-SP-VRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAK  224 (1075)
T ss_pred             ccccc-hhHHHHHHHHHHhccCCc-ch-HHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccchHHHH
Confidence            22111 011122345555666654 34 99999999998877543   2222222  245555544    4567777778


Q ss_pred             HHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCchhHHHH--HhhCcHHHHHHhh
Q 008827          268 AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD--TSTAVQVAALGAISNIVVDFTTRRSTF--IRLGGVKLLVQLS  343 (552)
Q Consensus       268 ~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~--~~~g~i~~L~~ll  343 (552)
                      .+..+|..+....+.+-+.  .-..++...+++..+  -+..+|..|...|..++..-+...+..  .-...++.++.++
T Consensus       225 ~~l~~l~El~e~~pk~l~~--~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~m  302 (1075)
T KOG2171|consen  225 SALEALIELLESEPKLLRP--HLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMM  302 (1075)
T ss_pred             HHHHHHHHHHhhchHHHHH--HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhc
Confidence            8888888888775544333  223455556666654  478999999999998886532222111  2223555555554


Q ss_pred             cCC--C--------------HHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827          344 KSM--D--------------STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  407 (552)
Q Consensus       344 ~~~--~--------------~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  407 (552)
                      ...  +              ..-...|..++-.++.+-+++    .+-.-.++.+-.++.++++..+..++.+|+.+..|
T Consensus       303 te~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~----~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EG  378 (1075)
T KOG2171|consen  303 TEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK----QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEG  378 (1075)
T ss_pred             CCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh----hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence            331  0              113445666666666654431    11223466777888999999999999999999999


Q ss_pred             CcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC-Chh
Q 008827          408 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSR  486 (552)
Q Consensus       408 ~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~-~~~  486 (552)
                      ..+.+...+..   +++.+...|++ ++|.||..|+.+++.+++......+.-..       .-+.+.|+..+.+. ++.
T Consensus       379 c~~~m~~~l~~---Il~~Vl~~l~D-phprVr~AA~naigQ~stdl~p~iqk~~~-------e~l~~aL~~~ld~~~~~r  447 (1075)
T KOG2171|consen  379 CSDVMIGNLPK---ILPIVLNGLND-PHPRVRYAALNAIGQMSTDLQPEIQKKHH-------ERLPPALIALLDSTQNVR  447 (1075)
T ss_pred             cHHHHHHHHHH---HHHHHHhhcCC-CCHHHHHHHHHHHHhhhhhhcHHHHHHHH-------HhccHHHHHHhcccCchH
Confidence            87766655544   78999999998 99999999999999999865544444332       34556788888775 679


Q ss_pred             HHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHH-HHHhhhcCCCccHHHHHHHHHHHHhhhcCC
Q 008827          487 LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVS-HVKNMVNDPCLDVKLRVKTALEQFNSFDDS  550 (552)
Q Consensus       487 ~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~-~L~~ll~~~~~~v~~~a~~al~~~~~~~~~  550 (552)
                      ++..|+.++-|+...   ...+..... -.+.++ .+..+.+++++.+++.|..||...++.+++
T Consensus       448 V~ahAa~al~nf~E~---~~~~~l~pY-Ld~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~  508 (1075)
T KOG2171|consen  448 VQAHAAAALVNFSEE---CDKSILEPY-LDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE  508 (1075)
T ss_pred             HHHHHHHHHHHHHHh---CcHHHHHHH-HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence            999999999999852   233333332 223444 444466788999999999999998887653

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.70  E-value=2.9e-13  Score=139.94  Aligned_cols=394  Identities=14%  Similarity=0.156  Sum_probs=282.3

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHh
Q 008827          126 IIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEV  204 (552)
Q Consensus       126 l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  204 (552)
                      ++..+++.+.+.-..++.+|..+.....    ......+..+.|...|. .++.|+..++..+.+++.++......+.+.
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~----~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~  118 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSALS----PDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN  118 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhccC----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence            6666776666666777777887766432    11225678888888888 457899999999999998888777777788


Q ss_pred             CcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc
Q 008827          205 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS  284 (552)
Q Consensus       205 ~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~  284 (552)
                      +.++.++.++.+++  ..+...|..+|..++...+. ...+.+.++++.+..++...+..+|..+..++.+++...+...
T Consensus       119 ~l~~~i~~~L~~~d--~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~  195 (503)
T PF10508_consen  119 ELLPLIIQCLRDPD--LSVAKAAIKALKKLASHPEG-LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA  195 (503)
T ss_pred             cHHHHHHHHHcCCc--HHHHHHHHHHHHHHhCCchh-HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence            99999999998764  78899999999999976544 4567788889999999999899999999999999987755555


Q ss_pred             chhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC--CH---HHHH-HHHHHH
Q 008827          285 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--DS---TIRL-NALRAL  358 (552)
Q Consensus       285 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~---~v~~-~a~~aL  358 (552)
                      .. ..+.|+++.++..++++|.-++.+|+..|..++. .+...+.+.+.|+++.|..++.+.  ++   .+.. ..+...
T Consensus       196 ~~-~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~  273 (503)
T PF10508_consen  196 EA-VVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF  273 (503)
T ss_pred             HH-HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence            44 6788999999999999999999999999999997 667788899999999999998764  22   1222 233566


Q ss_pred             HHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHH-HhhcCc---hHHHHHHHhcccC
Q 008827          359 RNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI-FAEDGI---ILDAVGRQLRIAS  434 (552)
Q Consensus       359 ~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~~~~---~~~~l~~~L~~~~  434 (552)
                      ++++...++......  ...+..+.+++.+.|+..+..|+.+++.++.+. +....+ ...++.   ++..+.....+ +
T Consensus       274 g~la~~~~~~v~~~~--p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~-~  349 (503)
T PF10508_consen  274 GNLARVSPQEVLELY--PAFLERLFSMLESQDPTIREVAFDTLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKS-G  349 (503)
T ss_pred             HHHHhcChHHHHHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcC-C
Confidence            677664332221111  234566778888999999999999999998653 334444 333321   33333333344 6


Q ss_pred             chhHHHHHHHHHHhhcCCChh-hHH---HHHHHhhHhhhhhhHH-HHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHH
Q 008827          435 KAEIEIQGMYVLGNVATGKES-HKE---AVMDQLLLRAENKAQS-CIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGR  509 (552)
Q Consensus       435 ~~~v~~~a~~~L~~la~~~~~-~~~---~i~~~~~~~~~~~~v~-~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  509 (552)
                      ..+++..++.+++++....+. ..+   .+.+..+.....+-.. .++.+++.+-+++|.++...+..++.    ...-.
T Consensus       350 ~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~----~~Wg~  425 (503)
T PF10508_consen  350 STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA----QPWGQ  425 (503)
T ss_pred             chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc----CHHHH
Confidence            678999999999999542221 111   2222211111223333 78889999999999999999999994    22223


Q ss_pred             HHHHHHCCcHHHHHhhhcCCCccHHHH
Q 008827          510 LVKLHDAGIVSHVKNMVNDPCLDVKLR  536 (552)
Q Consensus       510 ~~~l~~~g~~~~L~~ll~~~~~~v~~~  536 (552)
                      ..-....|.++.|..--.+.+++.++.
T Consensus       426 ~~i~~~~gfie~lldr~~E~~K~~ke~  452 (503)
T PF10508_consen  426 REICSSPGFIEYLLDRSTETTKEGKEA  452 (503)
T ss_pred             HHHHhCccHHhhhcCCCCCCCHHHHHH
Confidence            333345566677776655566666654

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=2.1e-14  Score=131.33  Aligned_cols=313  Identities=19%  Similarity=0.206  Sum_probs=236.9

Q ss_pred             CCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhc--CCCCcchHHHHHHHHhhcCChh-hHHHHHhcCchHH
Q 008827            5 KSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLN--NESENVSGLGASIISHSCKTSL-EQKLLFDAGVLKR   81 (552)
Q Consensus         5 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~--~~~~~~~~~a~~~l~~~~~~~~-~~~~l~~~g~i~~   81 (552)
                      +++..+...++.+|..+.   ... +++++..++..++.+|.  .++.++-......+.+.|-..+ +|..+.+.++.+.
T Consensus       118 ~~~~~~l~ksL~al~~lt---~~q-pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~L  193 (461)
T KOG4199|consen  118 SPNESVLKKSLEAINSLT---HKQ-PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILEL  193 (461)
T ss_pred             CCchhHHHHHHHHHHHhh---cCC-cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHH
Confidence            445555555555555443   333 79999999999999997  3556788888888888776544 5888899999999


Q ss_pred             HHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhh
Q 008827           82 LTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDV  159 (552)
Q Consensus        82 L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~  159 (552)
                      +.+.|.+  ..++-....++++.|..+++-.. .+     +                             .. .+| ...
T Consensus       194 i~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV-~f-----g-----------------------------~a-h~h-Ar~  236 (461)
T KOG4199|consen  194 ILQVLNREGKTRTVRELYDAIRALLTDDDIRV-VF-----G-----------------------------QA-HGH-ART  236 (461)
T ss_pred             HHHHHcccCccHHHHHHHHHHHHhcCCCceee-ec-----c-----------------------------hh-hHH-HHH
Confidence            9988874  23344445677777766543221 11     1                             00 012 234


Q ss_pred             hhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhH---HHHHHHHHHh
Q 008827          160 GIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRF---EGILLALADM  234 (552)
Q Consensus       160 ~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~---~~a~~aL~~l  234 (552)
                      +...|++..|++.++  -++++....+.+|..++..++.+ +.+.+.||+..|++++.+++ +...|   ..++..|..+
T Consensus       237 ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C-~~I~e~GGl~tl~~~i~d~n-~~~~r~l~k~~lslLral  314 (461)
T KOG4199|consen  237 IAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEIC-KSIAESGGLDTLLRCIDDSN-EQGNRTLAKTCLSLLRAL  314 (461)
T ss_pred             HHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHH-HHHHHccCHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHH
Confidence            667788999999998  35788889999999999777654 67899999999999998864 33344   5677888888


Q ss_pred             hcCChhHHHHHHhcccHHHHHHhcC--CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CC-CHHHHH
Q 008827          235 CSKLECCRSRCLSLQVLKLVVDALA--HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DT-STAVQV  310 (552)
Q Consensus       235 ~~~~~~~~~~~~~~~~l~~lv~~L~--~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~-~~~v~~  310 (552)
                      +. +++++..+++.|+.+.++.++.  .++|.|...++.++..++-..+..... +++.|+-...++.|+ +| ...+|.
T Consensus       315 AG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~-~ie~G~a~~avqAmkahP~~a~vQr  392 (461)
T KOG4199|consen  315 AG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAK-AIEAGAADLAVQAMKAHPVAAQVQR  392 (461)
T ss_pred             hC-CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHH-HHhcchHHHHHHHHHhCcHHHHHHH
Confidence            86 5688999999999999999885  568899999999999998665555555 899999999999997 44 568999


Q ss_pred             HHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008827          311 AALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF  363 (552)
Q Consensus       311 ~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  363 (552)
                      +|++.+.|++.....++..++ ..+++.|+...+..++..+..+-.+|..+..
T Consensus       393 nac~~IRNiv~rs~~~~~~~l-~~GiE~Li~~A~~~h~tce~~akaALRDLGc  444 (461)
T KOG4199|consen  393 NACNMIRNIVVRSAENRTILL-ANGIEKLIRTAKANHETCEAAAKAALRDLGC  444 (461)
T ss_pred             HHHHHHHHHHHhhhhccchHH-hccHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence            999999999987777775555 5778999999888888888888888888854

>PRK09687 putative lyase; Provisional

Probab=99.70  E-value=5.9e-15  Score=139.99  Aligned_cols=255  Identities=16%  Similarity=0.136  Sum_probs=201.4

Q ss_pred             CcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc
Q 008827          205 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS  284 (552)
Q Consensus       205 ~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~  284 (552)
                      -.++.|...|.+.+  ..+|..++++|..+..  +         ..++.+..+++++++.+|..++++|+.+......  
T Consensus        23 ~~~~~L~~~L~d~d--~~vR~~A~~aL~~~~~--~---------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--   87 (280)
T PRK09687         23 LNDDELFRLLDDHN--SLKRISSIRVLQLRGG--Q---------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--   87 (280)
T ss_pred             ccHHHHHHHHhCCC--HHHHHHHHHHHHhcCc--c---------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence            34678888887764  7899999999988752  2         2578888999999999999999999998653110  


Q ss_pred             chhhhccCcHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008827          285 AGSFMNETIVIPLVRL-LDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF  363 (552)
Q Consensus       285 ~~~~~~~~~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  363 (552)
                           ....++.|..+ ++++++.|+..|+.+|+++.......     ...+++.+...+.+++..||..++++|+.+..
T Consensus        88 -----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~  157 (280)
T PRK09687         88 -----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND  157 (280)
T ss_pred             -----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC
Confidence                 12456788877 67899999999999999986432211     12356677788889999999999999987732


Q ss_pred             cCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHH
Q 008827          364 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGM  443 (552)
Q Consensus       364 ~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~  443 (552)
                                  ...++.|+.++.++++.|+..|+.+|+++..+++.           +++.|...|.+ +++.|+..++
T Consensus       158 ------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~-----------~~~~L~~~L~D-~~~~VR~~A~  213 (280)
T PRK09687        158 ------------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD-----------IREAFVAMLQD-KNEEIRIEAI  213 (280)
T ss_pred             ------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH-----------HHHHHHHHhcC-CChHHHHHHH
Confidence                        12688999999999999999999999999544432           67778888877 8999999999


Q ss_pred             HHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHH
Q 008827          444 YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVK  523 (552)
Q Consensus       444 ~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~  523 (552)
                      ++|+.+-.                  ..+++.|++.|++++  ++..++.+|+++..               ..+++.|.
T Consensus       214 ~aLg~~~~------------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~---------------~~a~p~L~  258 (280)
T PRK09687        214 IGLALRKD------------------KRVLSVLIKELKKGT--VGDLIIEAAGELGD---------------KTLLPVLD  258 (280)
T ss_pred             HHHHccCC------------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC---------------HhHHHHHH
Confidence            99998642                  234588999999876  67889999999883               13588999


Q ss_pred             hhhc-CCCccHHHHHHHHHHH
Q 008827          524 NMVN-DPCLDVKLRVKTALEQ  543 (552)
Q Consensus       524 ~ll~-~~~~~v~~~a~~al~~  543 (552)
                      ++++ ++++.++.++.+||..
T Consensus       259 ~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        259 TLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHhhCCChhHHHHHHHHHhc
Confidence            9985 7889999999999875

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.69  E-value=4.7e-14  Score=149.34  Aligned_cols=466  Identities=16%  Similarity=0.167  Sum_probs=322.3

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHH
Q 008827            4 LKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLT   83 (552)
Q Consensus         4 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~   83 (552)
                      .+.+....+-+--++..+...+  +  +.. .-.+..+.+=|+++++.++..|..++++++ .++.-.     -.++.+.
T Consensus        52 ~s~~~~~Krl~yl~l~~~~~~~--~--~~~-~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~~~~-----~l~~~v~  120 (526)
T PF01602_consen   52 SSKDLELKRLGYLYLSLYLHED--P--ELL-ILIINSLQKDLNSPNPYIRGLALRTLSNIR-TPEMAE-----PLIPDVI  120 (526)
T ss_dssp             SSSSHHHHHHHHHHHHHHTTTS--H--HHH-HHHHHHHHHHHCSSSHHHHHHHHHHHHHH--SHHHHH-----HHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhhcc--h--hHH-HHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccchhh-----HHHHHHH
Confidence            3566666666666666664332  2  211 135677778888899999999999999998 333221     2467788


Q ss_pred             HhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhH
Q 008827           84 SLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK  162 (552)
Q Consensus        84 ~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~  162 (552)
                      +++.+ ++.||.+|+.++..+...+++....      . .++.+..+++|.++.++..|..++..+ +..+....  ...
T Consensus       121 ~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~------~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~--~~~  190 (526)
T PF01602_consen  121 KLLSDPSPYVRKKAALALLKIYRKDPDLVED------E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK--SLI  190 (526)
T ss_dssp             HHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG------G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT--THH
T ss_pred             HHhcCCchHHHHHHHHHHHHHhccCHHHHHH------H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh--hhH
Confidence            88886 7899999999999998777665321      2 478888999999999999999999998 22111000  223


Q ss_pred             HhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH
Q 008827          163 TKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC  241 (552)
Q Consensus       163 ~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~  241 (552)
                      ...++.|.+++.. ++..+..+...+..++..++.....   ...++.+..++.+.+  +.+...+..++..+.... . 
T Consensus       191 ~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~--~~V~~e~~~~i~~l~~~~-~-  263 (526)
T PF01602_consen  191 PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSS--PSVVYEAIRLIIKLSPSP-E-  263 (526)
T ss_dssp             HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHSSSH-H-
T ss_pred             HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccc--cHHHHHHHHHHHHhhcch-H-
Confidence            4566666666664 4566888899999988877665321   345677888777653  778889999999887533 2 


Q ss_pred             HHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhh
Q 008827          242 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIV  320 (552)
Q Consensus       242 ~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~  320 (552)
                          .-..+++.+..++.++++.+|..++..|..++....    . .+. . ....+..+. +++..++..+...|..++
T Consensus       264 ----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~----~-~v~-~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~  332 (526)
T PF01602_consen  264 ----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP----P-AVF-N-QSLILFFLLYDDDPSIRKKALDLLYKLA  332 (526)
T ss_dssp             ----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH----H-HHG-T-HHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred             ----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc----h-hhh-h-hhhhhheecCCCChhHHHHHHHHHhhcc
Confidence                233578999999999999999999999999987631    1 222 2 223334444 889999999999999998


Q ss_pred             cCCchhHHHHHhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHH
Q 008827          321 VDFTTRRSTFIRLGGVKLLVQLS-KSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALA  399 (552)
Q Consensus       321 ~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~  399 (552)
                      ..  .+..     .+++.|...+ ..+++.++..++.+++.++....+ ..     .-.++.+++++...+..+...+..
T Consensus       333 ~~--~n~~-----~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~-~~-----~~~v~~l~~ll~~~~~~~~~~~~~  399 (526)
T PF01602_consen  333 NE--SNVK-----EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP-DA-----EWYVDTLLKLLEISGDYVSNEIIN  399 (526)
T ss_dssp             -H--HHHH-----HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS-SH-----HHHHHHHHHHHHCTGGGCHCHHHH
T ss_pred             cc--cchh-----hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc-hH-----HHHHHHHHHhhhhccccccchHHH
Confidence            52  2222     2678888888 455888999999999998753221 11     124678888998888888888888


Q ss_pred             HHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHh
Q 008827          400 LVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF  479 (552)
Q Consensus       400 ~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~l  479 (552)
                      .+.++....++....       ++..+...+.+..+++++..++|++|..+...+. .. ..        ..++..+...
T Consensus       400 ~i~~ll~~~~~~~~~-------~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~--------~~~~~~l~~~  462 (526)
T PF01602_consen  400 VIRDLLSNNPELREK-------ILKKLIELLEDISSPEALAAAIWILGEYGELIEN-TE-SA--------PDILRSLIEN  462 (526)
T ss_dssp             HHHHHHHHSTTTHHH-------HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HH--------HHHHHHHHHH
T ss_pred             HHHHHhhcChhhhHH-------HHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cH--------HHHHHHHHHh
Confidence            888888766654443       3556667777657788999999999998763322 00 11        2344566777


Q ss_pred             hcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhc--CCCccHHHHHHHHHHHHh
Q 008827          480 LQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN--DPCLDVKLRVKTALEQFN  545 (552)
Q Consensus       480 L~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~--~~~~~v~~~a~~al~~~~  545 (552)
                      ....+..+|.....++..+....  ...+...     .+++.+.++.+  +.+++||+||.+.+.-+.
T Consensus       463 ~~~~~~~vk~~ilt~~~Kl~~~~--~~~~~~~-----~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~  523 (526)
T PF01602_consen  463 FIEESPEVKLQILTALAKLFKRN--PENEVQN-----EILQFLLSLATEDSSDPEVRDRAREYLRLLN  523 (526)
T ss_dssp             HTTSHHHHHHHHHHHHHHHHHHS--CSTTHHH-----HHHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred             hccccHHHHHHHHHHHHHHHhhC--CchhhHH-----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence            77777889999999999887521  1111111     23556666766  779999999998877654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.69  E-value=1.2e-13  Score=142.90  Aligned_cols=404  Identities=13%  Similarity=0.110  Sum_probs=281.6

Q ss_pred             HHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccc
Q 008827           39 EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGP  117 (552)
Q Consensus        39 ~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~  117 (552)
                      +.++..|++.+++....++.+|..+-+.......  ..+..+.|...|.+ ++.||..++..++++...++.....+.  
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~--  116 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV--  116 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc--
Confidence            4477888877777778888888888764433332  45567888888887 789999999999998877766544443  


Q ss_pred             cCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHH
Q 008827          118 DTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKED  196 (552)
Q Consensus       118 ~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~  196 (552)
                       +.+.++.++..+.+++..+...|..+|..++.+...  .+.++..+.++.|.+++.. ++.+|..+..++.++++.+++
T Consensus       117 -~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~--~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~  193 (503)
T PF10508_consen  117 -DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG--LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPE  193 (503)
T ss_pred             -CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh--HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHH
Confidence             467889999999999999999999999999986543  3456677779999999986 667899999999999999999


Q ss_pred             HHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCC--CH---H-HHHHHH
Q 008827          197 MQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD--SS---D-VRSAAC  270 (552)
Q Consensus       197 ~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~--~~---~-v~~~a~  270 (552)
                      ....+.+.|.++.+++.|.+.  |.-++.+++..|..++. .+.....+.+.|+++.+..++.+.  ++   . ..-...
T Consensus       194 ~~~~~~~sgll~~ll~eL~~d--DiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~  270 (503)
T PF10508_consen  194 AAEAVVNSGLLDLLLKELDSD--DILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM  270 (503)
T ss_pred             HHHHHHhccHHHHHHHHhcCc--cHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH
Confidence            888888999999999988884  57889999999999998 667778889999999999999743  22   1 122333


Q ss_pred             HHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHH-HhhC-----cHHHHHHhhc
Q 008827          271 MCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF-IRLG-----GVKLLVQLSK  344 (552)
Q Consensus       271 ~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~-~~~g-----~i~~L~~ll~  344 (552)
                      ...++++...+. ... -.-..++..+..++++.|+..+..|..+++.++. ....+..+ ...|     .+..+....+
T Consensus       271 ~f~g~la~~~~~-~v~-~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~  347 (503)
T PF10508_consen  271 KFFGNLARVSPQ-EVL-ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIK  347 (503)
T ss_pred             HHHHHHHhcChH-HHH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhc
Confidence            566666663111 110 0113455666777788999999999999999985 45666555 3322     4555556666


Q ss_pred             CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHH
Q 008827          345 SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILD  424 (552)
Q Consensus       345 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~  424 (552)
                      ++..++|..++.++.++.....+....++.                    . ......+...+.+            ...
T Consensus       348 ~~~~~lk~r~l~al~~il~~~~~~~~~~i~--------------------~-~~~~w~~~~~~~~------------~~~  394 (503)
T PF10508_consen  348 SGSTELKLRALHALASILTSGTDRQDNDIL--------------------S-ITESWYESLSGSP------------LSN  394 (503)
T ss_pred             CCchHHHHHHHHHHHHHHhcCCCCchHHHH--------------------H-HHHHHHHHhcCCc------------hHH
Confidence            778889999999999985432211111111                    0 0111111111111            111


Q ss_pred             HHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChh---HHHHHHHHHH
Q 008827          425 AVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSR---LRTAAVWAVL  496 (552)
Q Consensus       425 ~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~---~~~~a~~~l~  496 (552)
                      .+..+++. |=++++..+...|..++.... ....+...      .|++..++.--.+.+.+   .|...+.+|.
T Consensus       395 ~l~~~~~q-PF~elr~a~~~~l~~l~~~~W-g~~~i~~~------~gfie~lldr~~E~~K~~ke~K~~ii~~l~  461 (503)
T PF10508_consen  395 LLMSLLKQ-PFPELRCAAYRLLQALAAQPW-GQREICSS------PGFIEYLLDRSTETTKEGKEAKYDIIKALA  461 (503)
T ss_pred             HHHHHhcC-CchHHHHHHHHHHHHHhcCHH-HHHHHHhC------ccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence            55555655 778999999999999998654 45556652      56655555443334433   3444444444

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=8.5e-16  Score=148.27  Aligned_cols=275  Identities=22%  Similarity=0.312  Sum_probs=221.5

Q ss_pred             HHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHh
Q 008827          263 SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL  342 (552)
Q Consensus       263 ~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~l  342 (552)
                      ..-..+++.+|.+++++...+|+. +.+..+.++|+++|++|+..+..-+..+++|.+..+++.+..+++.|.+..++.+
T Consensus       403 ~l~~~a~~l~LkS~SrSV~~LRTg-L~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~  481 (743)
T COG5369         403 DLDFVAIVLFLKSMSRSVTFLRTG-LLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNL  481 (743)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhh-ccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHH
Confidence            344567889999999999889988 9999999999999999988888999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc---hHHHHHhhc
Q 008827          343 SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN---SVEYIFAED  419 (552)
Q Consensus       343 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~---~~~~i~~~~  419 (552)
                      +.+.+..+|.+..|.+.++.++.+.+.+-+.+...+++.++.+.++++..+|.+++.+|+|++++...   ..+..+...
T Consensus       482 v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~  561 (743)
T COG5369         482 VMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKAT  561 (743)
T ss_pred             hhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecC
Confidence            99999999999999999999988777888999999999999999999999999999999999875322   111111111


Q ss_pred             C--chHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc----------------
Q 008827          420 G--IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ----------------  481 (552)
Q Consensus       420 ~--~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~----------------  481 (552)
                      .  .++..+...++. .+|--....+++|.++++.+...++.++++      .+.+..+...|.                
T Consensus       562 p~~ylfk~l~~k~e~-~np~~i~~~~yilv~~aa~d~~l~~~V~~q------~~~L~~i~eil~e~a~r~~L~pg~~~~~  634 (743)
T COG5369         562 PRRYLFKRLIDKYEE-NNPMEILEGCYILVRNAACDDTLDYIVQSQ------EDMLDSIFEILDEFAGRTPLSPGSKEEH  634 (743)
T ss_pred             hHHHHHHHHHHHHHh-cCchhhhhhHHHHHHHHhccchHHHHHHhH------HHHHHHHHHHHHHHcccCCCCCCCCccc
Confidence            0  156777788887 777767777999999988666556655542      333222222111                


Q ss_pred             -------------------------------------CCChhHHHHHHHHHHhhcCCCCC-----CCHHHHHHHHHCCcH
Q 008827          482 -------------------------------------SNDSRLRTAAVWAVLNLTCSSSP-----GSSGRLVKLHDAGIV  519 (552)
Q Consensus       482 -------------------------------------~~~~~~~~~a~~~l~~l~~~~~~-----~~~~~~~~l~~~g~~  519 (552)
                                                           ++|.+.-.+..|.+.|+.|+.++     .+.|+.+.+.+.|.-
T Consensus       635 v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~  714 (743)
T COG5369         635 VLLPISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIR  714 (743)
T ss_pred             ccCccceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHH
Confidence                                                 02344667888999998886542     234899999999999


Q ss_pred             HHHHhhhcCCCccHHHHHHHHHHHHh
Q 008827          520 SHVKNMVNDPCLDVKLRVKTALEQFN  545 (552)
Q Consensus       520 ~~L~~ll~~~~~~v~~~a~~al~~~~  545 (552)
                      +.++++..+++++|||++..||.++.
T Consensus       715 e~l~k~q~~~Sl~vrek~~taL~~l~  740 (743)
T COG5369         715 EWLVKIQAKDSLIVREKIGTALENLR  740 (743)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHhhh
Confidence            99999999999999999999999874

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.67  E-value=1.6e-14  Score=153.23  Aligned_cols=377  Identities=17%  Similarity=0.137  Sum_probs=260.5

Q ss_pred             HHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC--C--CCchhchHHHHHHHhhcCCHHHHHHHHH
Q 008827          128 EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--D--PGRVGDEASFAFSSLIAEKEDMQKLAFE  203 (552)
Q Consensus       128 ~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~--~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~  203 (552)
                      .++.-.....+..-++.|..++.....+  -.++..|++|.|++++-  +  +.+.+..|-.+|.|+.-..++..+.-.+
T Consensus       201 sllsml~t~D~ee~ar~fLemSss~esC--aamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE  278 (2195)
T KOG2122|consen  201 SLLSMLGTDDEEEMARTFLEMSSSPESC--AAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRRE  278 (2195)
T ss_pred             HHhhhcccCCHHHHHHHHHHhccCchhh--HHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHH
Confidence            3444444444555556666676655443  34778999999999997  2  3467889999999998777765443333


Q ss_pred             hCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHH-HHHHHHHHhhccccc
Q 008827          204 VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRS-AACMCLRSVSRSIKN  282 (552)
Q Consensus       204 ~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~-~a~~~L~~ls~~~~~  282 (552)
                      ...++.|-+          ++.++..+...+-...+                 -.-+...+-+. +|..+|..++.. +.
T Consensus       279 ~kvL~lLeQ----------IraYC~~~~~~lqar~~-----------------~~apa~~~H~lcaA~~~lMK~SFD-EE  330 (2195)
T KOG2122|consen  279 KKVLHLLEQ----------IRAYCETCWTWLQARGP-----------------AIAPASDEHQLCAALCTLMKLSFD-EE  330 (2195)
T ss_pred             HHHHHHHHH----------HHHHHHHHHHHHHhcCC-----------------CCCCcccchhhHHHHHHHHHhhcc-HH
Confidence            222222211          11111111111100000                 00001111122 333344444444 33


Q ss_pred             ccchhhhccCcHHHHHHhhc------------CCCHHHHHHHHHHHHHhhcCCchhHHHHH-hhCcHHHHHHhhcCCCHH
Q 008827          283 LSAGSFMNETIVIPLVRLLD------------DTSTAVQVAALGAISNIVVDFTTRRSTFI-RLGGVKLLVQLSKSMDST  349 (552)
Q Consensus       283 ~~~~~~~~~~~i~~Lv~lL~------------~~~~~v~~~a~~aL~nl~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~  349 (552)
                      .|.. +.+-|+++.+-.|+.            ..+..+|.+|..+|.||+.+...+|..+. ..|.+..++..|.+..++
T Consensus       331 hR~a-M~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pee  409 (2195)
T KOG2122|consen  331 HRHA-MNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEE  409 (2195)
T ss_pred             HHHH-HHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHH
Confidence            3333 444455444444432            01457999999999999998887776654 469999999999999889


Q ss_pred             HHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhh-hcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHH
Q 008827          350 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL-ICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGR  428 (552)
Q Consensus       350 v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~  428 (552)
                      +.......|.||.-..+...|+.+-+.|.+..|... ++..........+.+||||..++.++...+..-+| ++..|+.
T Consensus       410 L~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDG-ALaFLVg  488 (2195)
T KOG2122|consen  410 LLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDG-ALAFLVG  488 (2195)
T ss_pred             HHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccc-hHHHHHh
Confidence            988889999999866666677777788888777765 45566677888999999999887777667766655 7888988


Q ss_pred             Hhccc---CchhHHHHHHHHHHhhcC---CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCC
Q 008827          429 QLRIA---SKAEIEIQGMYVLGNVAT---GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSS  502 (552)
Q Consensus       429 ~L~~~---~~~~v~~~a~~~L~~la~---~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~  502 (552)
                      +|.-.   +.-.|.+.+-++|.|.+.   .++++|+....       ++.+..|.+.|++....+..++|.+|.||..  
T Consensus       489 ~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~-------~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSA--  559 (2195)
T KOG2122|consen  489 TLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR-------HNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--  559 (2195)
T ss_pred             hccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH-------hhHHHHHHHHhhhcceEEeecchhhhhhhhc--
Confidence            88642   334688899999988764   56678876554       8888999999999999999999999999986  


Q ss_pred             CCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          503 SPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       503 ~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                        ...+..+.|.+.|+++.|..|+.+.+....+-+..||.++..+
T Consensus       560 --R~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  560 --RSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             --CCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence              5677789999999999999999988888888888999988754

>PRK09687 putative lyase; Provisional

Probab=99.65  E-value=3.6e-14  Score=134.70  Aligned_cols=257  Identities=18%  Similarity=0.109  Sum_probs=198.2

Q ss_pred             CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHH
Q 008827          120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQ  198 (552)
Q Consensus       120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~  198 (552)
                      .-.+..+..++.|++..+|..|+..|..+..            ..+++.+.++++ +++.+|..++++|+.+-.....  
T Consensus        22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--   87 (280)
T PRK09687         22 KLNDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--   87 (280)
T ss_pred             hccHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence            3456788999999999999999999886643            246777888887 5678999999999998542211  


Q ss_pred             HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 008827          199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR  278 (552)
Q Consensus       199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~  278 (552)
                          ....++.|..++... +++.+|..++.+|++++......     ....++.+...+.++++.||..++.+|..+. 
T Consensus        88 ----~~~a~~~L~~l~~~D-~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-  156 (280)
T PRK09687         88 ----QDNVFNILNNLALED-KSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-  156 (280)
T ss_pred             ----hHHHHHHHHHHHhcC-CCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-
Confidence                123466777764443 46889999999999997533211     1124666778888999999999999995442 


Q ss_pred             ccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827          279 SIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL  358 (552)
Q Consensus       279 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL  358 (552)
                                 +...++.|+.+|+++++.++..|+.+|+++..+.         ..+++.|+..+.+++..||..|+++|
T Consensus       157 -----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---------~~~~~~L~~~L~D~~~~VR~~A~~aL  216 (280)
T PRK09687        157 -----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---------PDIREAFVAMLQDKNEEIRIEAIIGL  216 (280)
T ss_pred             -----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---------HHHHHHHHHHhcCCChHHHHHHHHHH
Confidence                       3357899999999999999999999999883222         24678899999999999999999999


Q ss_pred             HHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhH
Q 008827          359 RNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI  438 (552)
Q Consensus       359 ~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v  438 (552)
                      +.+-.  .          ..++.|++.+.+++  ++..++.+|+++....             .++.|.+++..++++.+
T Consensus       217 g~~~~--~----------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~~-------------a~p~L~~l~~~~~d~~v  269 (280)
T PRK09687        217 ALRKD--K----------RVLSVLIKELKKGT--VGDLIIEAAGELGDKT-------------LLPVLDTLLYKFDDNEI  269 (280)
T ss_pred             HccCC--h----------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCHh-------------HHHHHHHHHhhCCChhH
Confidence            98732  1          37889999999876  6678888998886431             68888888875589999


Q ss_pred             HHHHHHHHHh
Q 008827          439 EIQGMYVLGN  448 (552)
Q Consensus       439 ~~~a~~~L~~  448 (552)
                      +..+.++|..
T Consensus       270 ~~~a~~a~~~  279 (280)
T PRK09687        270 ITKAIDKLKR  279 (280)
T ss_pred             HHHHHHHHhc
Confidence            9999888753

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.63  E-value=1.8e-13  Score=151.66  Aligned_cols=276  Identities=20%  Similarity=0.189  Sum_probs=211.7

Q ss_pred             HhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH
Q 008827          163 TKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC  241 (552)
Q Consensus       163 ~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~  241 (552)
                      ...++.|++.|. +++.||..|+.+|..+.           ..+.++.|...|.++  ++.+|..|+.+|..+....+  
T Consensus       620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~--d~~VR~~Aa~aL~~l~~~~~--  684 (897)
T PRK13800        620 APSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDG--AAAVRRAAAEGLRELVEVLP--  684 (897)
T ss_pred             chhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhccC--
Confidence            456788888887 45788999988888763           134577888888665  47899999999888743211  


Q ss_pred             HHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 008827          242 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVV  321 (552)
Q Consensus       242 ~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~  321 (552)
                              -.+.+...|+++++.||..++.+|..+...             -.+.++..|.++++.+|..|+.+|+.+- 
T Consensus       685 --------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-------------~~~~l~~~L~D~d~~VR~~Av~aL~~~~-  742 (897)
T PRK13800        685 --------PAPALRDHLGSPDPVVRAAALDVLRALRAG-------------DAALFAAALGDPDHRVRIEAVRALVSVD-  742 (897)
T ss_pred             --------chHHHHHHhcCCCHHHHHHHHHHHHhhccC-------------CHHHHHHHhcCCCHHHHHHHHHHHhccc-
Confidence                    135677888889999999999988776421             1246778899999999999999998642 


Q ss_pred             CCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHH
Q 008827          322 DFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALV  401 (552)
Q Consensus       322 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L  401 (552)
                                   ..+.|..++.++++.+|..++.+|..+.....          ...+.|..++.++++.++..|+.+|
T Consensus       743 -------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~----------~~~~~L~~ll~D~d~~VR~aA~~aL  799 (897)
T PRK13800        743 -------------DVESVAGAATDENREVRIAVAKGLATLGAGGA----------PAGDAVRALTGDPDPLVRAAALAAL  799 (897)
T ss_pred             -------------CcHHHHHHhcCCCHHHHHHHHHHHHHhccccc----------hhHHHHHHHhcCCCHHHHHHHHHHH
Confidence                         12446778999999999999999998854221          2367888999999999999999999


Q ss_pred             HHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 008827          402 RNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ  481 (552)
Q Consensus       402 ~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~  481 (552)
                      +++.....            +...+...|.+ +++.|+..++.+|+.+..                  ...++.|+.+|+
T Consensus       800 g~~g~~~~------------~~~~l~~aL~d-~d~~VR~~Aa~aL~~l~~------------------~~a~~~L~~~L~  848 (897)
T PRK13800        800 AELGCPPD------------DVAAATAALRA-SAWQVRQGAARALAGAAA------------------DVAVPALVEALT  848 (897)
T ss_pred             HhcCCcch------------hHHHHHHHhcC-CChHHHHHHHHHHHhccc------------------cchHHHHHHHhc
Confidence            99864321            33456667777 789999999999987643                  123478899999


Q ss_pred             CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHH
Q 008827          482 SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQ  543 (552)
Q Consensus       482 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~  543 (552)
                      +++..||..|+++|..+.     +.++         ..+.|.+.++|++.+||..|..||..
T Consensus       849 D~~~~VR~~A~~aL~~~~-----~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        849 DPHLDVRKAAVLALTRWP-----GDPA---------ARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             CCCHHHHHHHHHHHhccC-----CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            999999999999999873     2221         36678889999999999999999874

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.63  E-value=2.1e-13  Score=151.00  Aligned_cols=275  Identities=18%  Similarity=0.138  Sum_probs=214.6

Q ss_pred             ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHH
Q 008827          121 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQK  199 (552)
Q Consensus       121 ~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~  199 (552)
                      ..++.+.+.++|+++.||..|+..|..+..            ...++.|+++|++ +.+||..|+.+|..+....+    
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----  684 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----  684 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence            356677889999999999999999886532            3578899999984 46899999999987753211    


Q ss_pred             HHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcc
Q 008827          200 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRS  279 (552)
Q Consensus       200 ~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~  279 (552)
                            ..+.|...|.++  ++.+|..++.+|..+...+            .+.++..|+++++.||..|+.+|..+.. 
T Consensus       685 ------~~~~L~~~L~~~--d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-  743 (897)
T PRK13800        685 ------PAPALRDHLGSP--DPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVDD-  743 (897)
T ss_pred             ------chHHHHHHhcCC--CHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence                  124566767764  5889999999998874221            3456789999999999999999876421 


Q ss_pred             cccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 008827          280 IKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR  359 (552)
Q Consensus       280 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~  359 (552)
                                    .+.|..++.|+++++|..++.+|+.+....         ...++.|..+++++++.+|..|+.+|+
T Consensus       744 --------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg  800 (897)
T PRK13800        744 --------------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALA  800 (897)
T ss_pred             --------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence                          245778899999999999999999875422         134788999999999999999999999


Q ss_pred             HhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHH
Q 008827          360 NLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIE  439 (552)
Q Consensus       360 ~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~  439 (552)
                      ++....           ...+.+...+.++++.|+..|+.+|+.+....             .++.|...|.+ +++.|+
T Consensus       801 ~~g~~~-----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~-------------a~~~L~~~L~D-~~~~VR  855 (897)
T PRK13800        801 ELGCPP-----------DDVAAATAALRASAWQVRQGAARALAGAAADV-------------AVPALVEALTD-PHLDVR  855 (897)
T ss_pred             hcCCcc-----------hhHHHHHHHhcCCChHHHHHHHHHHHhccccc-------------hHHHHHHHhcC-CCHHHH
Confidence            984311           12356778899999999999999999875322             57888888888 899999


Q ss_pred             HHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHh
Q 008827          440 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLN  497 (552)
Q Consensus       440 ~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~  497 (552)
                      ..++++|+.+. +++                ...+.|...++++|..||..|..+|..
T Consensus       856 ~~A~~aL~~~~-~~~----------------~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        856 KAAVLALTRWP-GDP----------------AARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHHHHHhccC-CCH----------------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            99999999873 222                223577888999999999999998853

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.63  E-value=1.3e-13  Score=146.41  Aligned_cols=369  Identities=14%  Similarity=0.129  Sum_probs=268.1

Q ss_pred             cchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcCC----HHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHH
Q 008827           51 NVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGS----LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCI  126 (552)
Q Consensus        51 ~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l  126 (552)
                      ..++.-+..+..++...+.=..+.+.|+++.|+++|...    ...+..|-.+|.+|.+.+++..+.       .-...+
T Consensus       209 ~D~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~-------RRE~kv  281 (2195)
T KOG2122|consen  209 DDEEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRG-------RREKKV  281 (2195)
T ss_pred             CCHHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhh-------HHHHHH
Confidence            334555666677776777677788999999999999862    356777788999998887665321       111222


Q ss_pred             HHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCch--hc-hHHHHHHHhhcCCHHHHHHHHH
Q 008827          127 IEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRV--GD-EASFAFSSLIAEKEDMQKLAFE  203 (552)
Q Consensus       127 ~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v--~~-~a~~~L~~l~~~~~~~~~~~~~  203 (552)
                      +.++.    .+|.....|-..+-..++.                 .  -+..+  +. .|..+|.++. .+++.++.+-+
T Consensus       282 L~lLe----QIraYC~~~~~~lqar~~~-----------------~--apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~E  337 (2195)
T KOG2122|consen  282 LHLLE----QIRAYCETCWTWLQARGPA-----------------I--APASDEHQLCAALCTLMKLS-FDEEHRHAMNE  337 (2195)
T ss_pred             HHHHH----HHHHHHHHHHHHHHhcCCC-----------------C--CCcccchhhHHHHHHHHHhh-ccHHHHHHHHH
Confidence            23222    1222221111111111110                 0  01112  22 4445566665 45566888889


Q ss_pred             hCcHHHHHHhhhcCC-------C---ChhhHHHHHHHHHHhhcCChhHHHHHH-hcccHHHHHHhcCCCCHHHHHHHHHH
Q 008827          204 VNGVDKLYNHLQKGS-------L---HPRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVDALAHDSSDVRSAACMC  272 (552)
Q Consensus       204 ~~~i~~L~~~L~~~~-------~---~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~lv~~L~~~~~~v~~~a~~~  272 (552)
                      .|+++.+-++|.-..       .   .-.+|..+.++|.||...+..++..+. ..|++..+|..|.+...++....+.+
T Consensus       338 LG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~Asv  417 (2195)
T KOG2122|consen  338 LGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASV  417 (2195)
T ss_pred             hhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHH
Confidence            999988888664321       0   124789999999999998877766654 45899999999999999999999999


Q ss_pred             HHHhhcccccccchhhhccCcHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCchhHHHHHh-hCcHHHHHHhhcCC----
Q 008827          273 LRSVSRSIKNLSAGSFMNETIVIPLVRL-LDDTSTAVQVAALGAISNIVVDFTTRRSTFIR-LGGVKLLVQLSKSM----  346 (552)
Q Consensus       273 L~~ls~~~~~~~~~~~~~~~~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~-~g~i~~L~~ll~~~----  346 (552)
                      |+||++.-+......+.+.|-+..|+.. |+...+....+.+.||.||+.++..+|..|.. .|++..|+.+|...    
T Consensus       418 LRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~  497 (2195)
T KOG2122|consen  418 LRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSN  497 (2195)
T ss_pred             HHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcc
Confidence            9999986443333326677888888875 45566678899999999999999888877765 58999999998764    


Q ss_pred             CHHHHHHHHHHHHHhccc--CChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHH
Q 008827          347 DSTIRLNALRALRNLIFL--AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILD  424 (552)
Q Consensus       347 ~~~v~~~a~~aL~~l~~~--~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~  424 (552)
                      .-.+.+.+-.+|.|....  ...+.|+.+.+..-+..|++.|++.+.-+..+++++|+||...+++..++++..+  ++.
T Consensus       498 tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~g--Av~  575 (2195)
T KOG2122|consen  498 TLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDG--AVP  575 (2195)
T ss_pred             hhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcc--cHH
Confidence            345777777788876432  1235788888899999999999999999999999999999999999999999988  789


Q ss_pred             HHHHHhcccCchhHHHHHHHHHHhhcCCC
Q 008827          425 AVGRQLRIASKAEIEIQGMYVLGNVATGK  453 (552)
Q Consensus       425 ~l~~~L~~~~~~~v~~~a~~~L~~la~~~  453 (552)
                      .|..++.+ ++..|...++.+|.|+...-
T Consensus       576 mLrnLIhS-KhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  576 MLRNLIHS-KHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             HHHHHHhh-hhhhhhhhHHHHHHHHhcCC
Confidence            99888888 88999999999999998754

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=9.6e-13  Score=132.60  Aligned_cols=498  Identities=14%  Similarity=0.098  Sum_probs=287.2

Q ss_pred             CCCcHHHHHHHHHHHHHHHcC--CCCCCcccccccchHHHHHhhcCCCC-cchHHHHHHHHhhcCChhhHHHHHhc-Cch
Q 008827            4 LKSYMEVVDAGARSLKMIYQS--KMAPKYDFLQEENMEFLLSLLNNESE-NVSGLGASIISHSCKTSLEQKLLFDA-GVL   79 (552)
Q Consensus         4 ~~~~~~~~~~~l~~l~~l~~~--~~~~~~~~~~~~~i~~l~~ll~~~~~-~~~~~a~~~l~~~~~~~~~~~~l~~~-g~i   79 (552)
                      +++-+...-.|.+|+..+...  |...+     ++.++.+++-..++.+ .+++.++.+|..+|..-..+...... .++
T Consensus       100 ~~~ep~~~s~Aaq~va~IA~~ElP~n~w-----p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iL  174 (859)
T KOG1241|consen  100 GSPEPRRPSSAAQCVAAIACIELPQNQW-----PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDIL  174 (859)
T ss_pred             CCCCCCccchHHHHHHHHHHhhCchhhC-----HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHH
Confidence            334444555555555555322  11111     3344555555544333 48899999999999764444222222 233


Q ss_pred             HHHHHhhcC---CHHHHHHHHHHHHHHhcCCh-hhhhhhccccCCcc-HHHHHHHHhcCChhhHHHHHHHHHHHhhhCCC
Q 008827           80 KRLTSLLGG---SLIQRDASLESIATIFKNNP-EVVSQFVGPDTGRT-LSCIIEIVKDRFARTRLLASLCLIVIRNASPC  154 (552)
Q Consensus        80 ~~L~~lL~~---~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~~~~-l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~  154 (552)
                      -.++.-.+.   +..+|.+|+.||.+=..... +..+..    ..++ +..+.+..+++|.++|.+|..||..+....-.
T Consensus       175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~----ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~  250 (859)
T KOG1241|consen  175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEM----ERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYE  250 (859)
T ss_pred             HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHh----hhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            444444432   45899999999987322211 111111    1222 34456678899999999999999998775433


Q ss_pred             cchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHH---------------HHH---HHhCcHHHHHHhhh
Q 008827          155 YLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQ---------------KLA---FEVNGVDKLYNHLQ  215 (552)
Q Consensus       155 ~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~---------------~~~---~~~~~i~~L~~~L~  215 (552)
                      +....+-+ ...+.-+.-++ ++++|...+..-=++++..+-+..               ...   .-.+.+|.|+++|.
T Consensus       251 ~m~~yM~~-alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~  329 (859)
T KOG1241|consen  251 FMEPYMEQ-ALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT  329 (859)
T ss_pred             HHHHHHHH-HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence            32222222 22333333333 445554444333333322111100               000   01234577777775


Q ss_pred             cCCC-------------------------------------------ChhhHHHHHHHHHHhhcCChhHHHHHHhcccHH
Q 008827          216 KGSL-------------------------------------------HPRRFEGILLALADMCSKLECCRSRCLSLQVLK  252 (552)
Q Consensus       216 ~~~~-------------------------------------------~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~  252 (552)
                      ..++                                           +.+-|+.++.+++++-...+..+..-...+++|
T Consensus       330 kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp  409 (859)
T KOG1241|consen  330 KQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP  409 (859)
T ss_pred             hCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence            5321                                           123478888999988766555555555678999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH-----
Q 008827          253 LVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR-----  327 (552)
Q Consensus       253 ~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~-----  327 (552)
                      .++.++.+++.-++..+.|+++.++...+..+.......+.++.++..|.+ .|.+-.+++|++.+|+.......     
T Consensus       410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~q  488 (859)
T KOG1241|consen  410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQ  488 (859)
T ss_pred             HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            999999999999999999999999887654333323445666667776755 58999999999999985322110     


Q ss_pred             ----HHHHhhCcHHHHHHhhcC---CCHHHHHHHHHHHHHhcccCChHhHHHHHHhh--cHHHHHh-----hhcCCC---
Q 008827          328 ----STFIRLGGVKLLVQLSKS---MDSTIRLNALRALRNLIFLAEDKCKEEIFMEL--TASLLAS-----LICDPE---  390 (552)
Q Consensus       328 ----~~~~~~g~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~--~~~~l~~-----ll~~~~---  390 (552)
                          ..+. ..++..|++....   .....|..|-.||+.+...++.++-..+....  .+..|-+     .+...|   
T Consensus       489 t~~~t~~y-~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q  567 (859)
T KOG1241|consen  489 TDPATPFY-EAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQ  567 (859)
T ss_pred             CCccchhH-HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHH
Confidence                0011 1244455554443   23568999999999998876654544333211  1122222     222222   


Q ss_pred             -hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhh
Q 008827          391 -PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAE  469 (552)
Q Consensus       391 -~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~  469 (552)
                       .++|...+..|.++...-...+..+-+   .++..+.+++++.++.-+.+.++.+++.++..-.......+        
T Consensus       568 ~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d---~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym--------  636 (859)
T KOG1241|consen  568 LNELQSLLCNTLQSIIRKVGSDIREVSD---QIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM--------  636 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHccccchhHHH---HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH--------
Confidence             245555556666655332222222222   27889999999845566888888888877763222333333        


Q ss_pred             hhhHHHHHHhhc-CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC
Q 008827          470 NKAQSCIIKFLQ-SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP  529 (552)
Q Consensus       470 ~~~v~~Lv~lL~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~  529 (552)
                      ..+.|.|..-|+ -.+..|+..|+..++.++.     +-+-....+-.++...|++.+.++
T Consensus       637 ~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~r-----aL~~~i~py~d~~mt~Lvq~Lss~  692 (859)
T KOG1241|consen  637 PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLAR-----ALEDDILPYCDELMTVLVQCLSSP  692 (859)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH-----HHHhhhhhHHHHHHHHHHHHccCc
Confidence            356788888884 4567899999999999984     222222223344567777777643

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.61  E-value=1.2e-12  Score=123.79  Aligned_cols=438  Identities=11%  Similarity=0.032  Sum_probs=301.2

Q ss_pred             CHHHHHHHHHHHHHHhcCChhhhhhhcccc-CCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHH
Q 008827           89 SLIQRDASLESIATIFKNNPEVVSQFVGPD-TGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLIN  167 (552)
Q Consensus        89 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~-~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~  167 (552)
                      +..++..+-.|+...++.. .-+..+.+.+ +.+.+..+.+..++++.++.....++|+|++..+.+ .++.+...|+-.
T Consensus        55 ~~tv~~~qssC~A~~sk~e-v~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E-~R~a~~~lgGaq  132 (604)
T KOG4500|consen   55 SDTVYLFQSSCLADRSKNE-VERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNE-NRAAFFNLGGAQ  132 (604)
T ss_pred             cchhhhhhHHHHHHHhhhH-HHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCch-hHHHHHhcCCce
Confidence            3455666667777766432 2222332211 245566666777788999999999999999987654 577788888866


Q ss_pred             HHHHhcC----CC-C---chhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCC-
Q 008827          168 NLLELLD----DP-G---RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL-  238 (552)
Q Consensus       168 ~Lv~ll~----~~-~---~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~-  238 (552)
                      .++..|+    .+ +   ..-..++..|.|-.-++.+.+..+.+.|.++.|...+--.......-+..+-.+.++.+.- 
T Consensus       133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~  212 (604)
T KOG4500|consen  133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC  212 (604)
T ss_pred             ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence            6666665    22 2   2345667889999999999999999999999998865433222334454554455544321 


Q ss_pred             hhHHHHHHhcccHHHHHHhcCCC-CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC-C-------CHHHH
Q 008827          239 ECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-T-------STAVQ  309 (552)
Q Consensus       239 ~~~~~~~~~~~~l~~lv~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~-------~~~v~  309 (552)
                      +.......+....-.+++++... +++.+......+...+.+ +..+-. +.+.|.++.++.+++. +       .-...
T Consensus       213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aen-d~Vkl~-la~~gl~e~~~~lv~~~k~~t~k~d~~~l~  290 (604)
T KOG4500|consen  213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEN-DLVKLS-LAQNGLLEDSIDLVRNMKDFTKKTDMLNLF  290 (604)
T ss_pred             HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcC-cceeee-hhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence            22333444556666677777543 556667777788888877 444545 7889999999998864 2       12333


Q ss_pred             HHHHHHHHHhhcCCchhHHHHHhhC-cHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc-
Q 008827          310 VAALGAISNIVVDFTTRRSTFIRLG-GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-  387 (552)
Q Consensus       310 ~~a~~aL~nl~~~~~~~~~~~~~~g-~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~-  387 (552)
                      ..++.-..-+..+.++ .+++...+ .++.+...+.+.|......+.-+++|+++.+  +....+++.+.++-++.++. 
T Consensus       291 k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D--~~ci~~v~~~~~nkL~~~l~~  367 (604)
T KOG4500|consen  291 KRIAELDVLLLTGDES-MQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRD--DICIQLVQKDFLNKLISCLMQ  367 (604)
T ss_pred             HhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444433 34566666 7888999999999999999999999999854  36778888899999998885 


Q ss_pred             ----CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHH
Q 008827          388 ----DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQ  463 (552)
Q Consensus       388 ----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~  463 (552)
                          +++.++|-.++.+|||+....+ +...+...|  +.+.+...+.. ..|.+.-.-++.+..+..+.+.....+.. 
T Consensus       368 ~~~vdgnV~~qhA~lsALRnl~IPv~-nka~~~~aG--vteaIL~~lk~-~~ppv~fkllgTlrM~~d~qe~~a~eL~k-  442 (604)
T KOG4500|consen  368 EKDVDGNVERQHACLSALRNLMIPVS-NKAHFAPAG--VTEAILLQLKL-ASPPVTFKLLGTLRMIRDSQEYIACELAK-  442 (604)
T ss_pred             hcCCCccchhHHHHHHHHHhccccCC-chhhccccc--hHHHHHHHHHh-cCCcchHHHHHHHHHHHhchHHHHHHHhc-
Confidence                4567888999999999986543 233445555  67777777777 66777777888888887766543333332 


Q ss_pred             hhHhhhhhhHHHHHHhhcCCChh-HHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHH
Q 008827          464 LLLRAENKAQSCIIKFLQSNDSR-LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE  542 (552)
Q Consensus       464 ~~~~~~~~~v~~Lv~lL~~~~~~-~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~  542 (552)
                           ....+..|+..-+++|.. +--+.-..+..+..  ..-..+.+..+...|+++.++.+.+..+...+..|..|+-
T Consensus       443 -----n~~l~ekLv~Wsks~D~aGv~gESnRll~~lIk--Hs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~  515 (604)
T KOG4500|consen  443 -----NPELFEKLVDWSKSPDFAGVAGESNRLLLGLIK--HSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALL  515 (604)
T ss_pred             -----CHHHHHHHHHhhhCCccchhhhhhhHHHHHHHH--hhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHH
Confidence                 356778899998998875 77777777777764  1123445667788899999999988777788888877775


Q ss_pred             HHh
Q 008827          543 QFN  545 (552)
Q Consensus       543 ~~~  545 (552)
                      .++
T Consensus       516 ~~~  518 (604)
T KOG4500|consen  516 STE  518 (604)
T ss_pred             HHH
Confidence            544

>PTZ00429 beta-adaptin; Provisional

Probab=99.59  E-value=6.1e-11  Score=125.92  Aligned_cols=470  Identities=15%  Similarity=0.113  Sum_probs=269.7

Q ss_pred             CCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHH
Q 008827            5 KSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTS   84 (552)
Q Consensus         5 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~   84 (552)
                      +.+..-.+.+++.+...+....    |+  ....+.++.++.+++..++..+.-.+.+.++.......+    ++..+.+
T Consensus        43 s~~~~~kk~alKkvIa~mt~G~----Dv--S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL----aINtl~K  112 (746)
T PTZ00429         43 GTDSYRKKAAVKRIIANMTMGR----DV--SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL----AVNTFLQ  112 (746)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCC----Cc--hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH----HHHHHHH
Confidence            3345556778887777765542    22  234566777888888888888888888887644432222    3445555


Q ss_pred             hhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHH
Q 008827           85 LLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKT  163 (552)
Q Consensus        85 lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~  163 (552)
                      -+.+ ++.+|-.|+++++.+-.  ++..        .-.+..+.+.+.|.++.||..|+.|+..+....++    .+...
T Consensus       113 Dl~d~Np~IRaLALRtLs~Ir~--~~i~--------e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe----lv~~~  178 (746)
T PTZ00429        113 DTTNSSPVVRALAVRTMMCIRV--SSVL--------EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ----LFYQQ  178 (746)
T ss_pred             HcCCCCHHHHHHHHHHHHcCCc--HHHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc----ccccc
Confidence            5555 67899999999998642  2232        22456677888999999999999999999886553    23456


Q ss_pred             hHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHH
Q 008827          164 KLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR  242 (552)
Q Consensus       164 g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~  242 (552)
                      +.++.|.+++.+ ++.|...|..+|..+...++..  .-...+.+..|+..|.+.+  +-.+...+..|......++.  
T Consensus       179 ~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e~~--EW~Qi~IL~lL~~y~P~~~~--  252 (746)
T PTZ00429        179 DFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPECN--EWGQLYILELLAAQRPSDKE--  252 (746)
T ss_pred             chHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHhcCCCCcH--
Confidence            889999999984 5678899999999887655431  2233455677777776543  33455666666553322111  


Q ss_pred             HHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccc-cccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 008827          243 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK-NLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVV  321 (552)
Q Consensus       243 ~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~-~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~  321 (552)
                       .  ...++..+...|++.++.|...|++++.+++.... .....  .-..+.++++.++ +++++++..+...|..++.
T Consensus       253 -e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~--~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~  326 (746)
T PTZ00429        253 -S--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIER--CTVRVNTALLTLS-RRDAETQYIVCKNIHALLV  326 (746)
T ss_pred             -H--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHH--HHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHH
Confidence             1  12468888899999999999999999999975421 11111  1123346677764 5678999999988877765


Q ss_pred             CCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHH
Q 008827          322 DFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALV  401 (552)
Q Consensus       322 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L  401 (552)
                      ..+.    ++... +..+.-...+++ .++...+..|..++...+   -..++     ..|.+...+.|.++...++.++
T Consensus       327 ~~P~----lf~~~-~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~N---v~~IL-----~EL~eYa~d~D~ef~r~aIrAI  392 (746)
T PTZ00429        327 IFPN----LLRTN-LDSFYVRYSDPP-FVKLEKLRLLLKLVTPSV---APEIL-----KELAEYASGVDMVFVVEVVRAI  392 (746)
T ss_pred             HCHH----HHHHH-HHhhhcccCCcH-HHHHHHHHHHHHHcCccc---HHHHH-----HHHHHHhhcCCHHHHHHHHHHH
Confidence            4432    11111 223322223222 355555555555543221   11111     2233333344444555555555


Q ss_pred             HHhhcCCcchHHHHHhh-------cC--------------------chHHHHHHHh--cccCchhHHHHHHHHHHhhcCC
Q 008827          402 RNLVDGRINSVEYIFAE-------DG--------------------IILDAVGRQL--RIASKAEIEIQGMYVLGNVATG  452 (552)
Q Consensus       402 ~~l~~~~~~~~~~i~~~-------~~--------------------~~~~~l~~~L--~~~~~~~v~~~a~~~L~~la~~  452 (552)
                      +.++..-+.....+++.       ++                    .++..+...+  ..-.+++.+...+|+|+.++..
T Consensus       393 g~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~  472 (746)
T PTZ00429        393 ASLAIKVDSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF  472 (746)
T ss_pred             HHHHHhChHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHhh
Confidence            54443322211111100       00                    0122222211  1113455666667777765431


Q ss_pred             ChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHh-hh-cCCC
Q 008827          453 KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKN-MV-NDPC  530 (552)
Q Consensus       453 ~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~-ll-~~~~  530 (552)
                              +++     ...++..+++-....+..||.....+...+...    .++..+.     .+..+.+ +. .+.+
T Consensus       473 --------I~~-----a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~----~p~~~~~-----~l~~vL~~~t~~~~d  530 (746)
T PTZ00429        473 --------IEN-----GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLR----DPQGMEP-----QLNRVLETVTTHSDD  530 (746)
T ss_pred             --------Hhh-----HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhc----CcHHHHH-----HHHHHHHHHHhcCCC
Confidence                    110     022333333333445667777777777776641    1111111     2334443 33 3578


Q ss_pred             ccHHHHHHHHHHHHhh
Q 008827          531 LDVKLRVKTALEQFNS  546 (552)
Q Consensus       531 ~~v~~~a~~al~~~~~  546 (552)
                      +|+|+||.....-+..
T Consensus       531 ~DVRDRA~~Y~rLLs~  546 (746)
T PTZ00429        531 PDVRDRAFAYWRLLSK  546 (746)
T ss_pred             hhHHHHHHHHHHHHcC
Confidence            8999998776665543

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.4e-12  Score=132.59  Aligned_cols=389  Identities=12%  Similarity=0.046  Sum_probs=272.3

Q ss_pred             cHHHHHHHHhc-CChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHH
Q 008827          122 TLSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQ  198 (552)
Q Consensus       122 ~l~~l~~ll~~-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~  198 (552)
                      .+..|+.-++. .|+..|..|+.-|+.+.....+.....+-...++|.|+.+|+  .+.+++..|+++|++|....|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            45566665554 499999999999998877665544555666789999999999  357899999999999998888877


Q ss_pred             HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 008827          199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR  278 (552)
Q Consensus       199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~  278 (552)
                      ..+++.++||.|+.-|..- ...++.|+++.+|-.+++..   -+.+.+.|++-..+.+|..-+..+|+.|.....|++.
T Consensus       248 a~vV~~~aIPvl~~kL~~I-eyiDvAEQ~LqALE~iSR~H---~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTI-EYIDVAEQSLQALEKISRRH---PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             heeecccchHHHHHhhhhh-hhhHHHHHHHHHHHHHHhhc---cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8889999999999877665 35778999999999998743   3568899999999999999999999999999999987


Q ss_pred             ccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch---hHHHHHhhCcHHHHHHhhcCCC----HHHH
Q 008827          279 SIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT---RRSTFIRLGGVKLLVQLSKSMD----STIR  351 (552)
Q Consensus       279 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~---~~~~~~~~g~i~~L~~ll~~~~----~~v~  351 (552)
                      +...-...  .-...+|.|..+|+..|....+.++.+++.++..+.+   .-+.+...|.+....+++.-.+    ..+.
T Consensus       324 si~sd~f~--~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~  401 (1051)
T KOG0168|consen  324 SIRSDEFH--FVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY  401 (1051)
T ss_pred             cCCCccch--HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence            64322212  2246789999999999999999999999999876543   3445677888888888876542    2344


Q ss_pred             HHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCC--------------hhHHHHHHHHH----------------
Q 008827          352 LNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE--------------PSVQEQALALV----------------  401 (552)
Q Consensus       352 ~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~--------------~~v~~~a~~~L----------------  401 (552)
                      ...+..|..++.+. |.....++..++...+..+|...+              |.-+-....++                
T Consensus       402 ~~vIrmls~msS~~-pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~  480 (1051)
T KOG0168|consen  402 TGVIRMLSLMSSGS-PLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVD  480 (1051)
T ss_pred             hHHHHHHHHHccCC-hHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehh
Confidence            55566666676643 444444445444444444443210              00000000000                


Q ss_pred             --------------------------------HHhhc--------------------------CCcchHHHHHhhcCchH
Q 008827          402 --------------------------------RNLVD--------------------------GRINSVEYIFAEDGIIL  423 (552)
Q Consensus       402 --------------------------------~~l~~--------------------------~~~~~~~~i~~~~~~~~  423 (552)
                                                      ..+.+                          ..|+..+.....   ++
T Consensus       481 ~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~---ll  557 (1051)
T KOG0168|consen  481 CSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKD---LL  557 (1051)
T ss_pred             hhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHH---HH
Confidence                                            01111                          011111111111   68


Q ss_pred             HHHHHHhcccCchhHHHHHHHHHHhhcC-CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCC
Q 008827          424 DAVGRQLRIASKAEIEIQGMYVLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSS  502 (552)
Q Consensus       424 ~~l~~~L~~~~~~~v~~~a~~~L~~la~-~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~  502 (552)
                      +.|++.+.++.++.|+..++.+|..+.. .+......++.      +..+-.++..+|.+.|..+...|....--|+.  
T Consensus       558 pVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk------~~~vSS~lAG~lsskD~~vlVgALQvAEiLme--  629 (1051)
T KOG0168|consen  558 PVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLK------NTNVSSHLAGMLSSKDLTVLVGALQVAEILME--  629 (1051)
T ss_pred             HHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHh------cchHHHHHHhhhhcCCCeeEeehHHHHHHHHH--
Confidence            9999999998999999999999998876 23334444443      47788899999999998877776655544442  


Q ss_pred             CCCCHHHHHHHHHCCcHHHHHhhhcCC
Q 008827          503 SPGSSGRLVKLHDAGIVSHVKNMVNDP  529 (552)
Q Consensus       503 ~~~~~~~~~~l~~~g~~~~L~~ll~~~  529 (552)
                       .-..-....++++|++..+.+|..+.
T Consensus       630 -Klpd~F~~~F~REGV~~~v~~L~~~~  655 (1051)
T KOG0168|consen  630 -KLPDTFSPSFRREGVFHAVKQLSVDS  655 (1051)
T ss_pred             -HhHHHhhhhHhhhhHHHHHHHHhccC
Confidence             11223466789999999999987643

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.54  E-value=5.9e-13  Score=123.41  Aligned_cols=229  Identities=18%  Similarity=0.187  Sum_probs=177.7

Q ss_pred             HHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccc
Q 008827          202 FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK  281 (552)
Q Consensus       202 ~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~  281 (552)
                      .+.+.+++|+.+|... .+|.+++.++.++++.+. .+..+..+.+.|+++.+..++.++++.+|..|+.++.|++.+.+
T Consensus         9 l~~~~l~~Ll~lL~~t-~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLEST-EDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             cCHHHHHHHHHHHhcC-CChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence            4566788999999877 478999999999999876 45788899999999999999999999999999999999988755


Q ss_pred             cccchhhhccCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 008827          282 NLSAGSFMNETIVIPLVRLLDD--TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR  359 (552)
Q Consensus       282 ~~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~  359 (552)
                      +...   + ..+++.+++...+  -+.++|.++..+|.|++.... .. .++ .+.++.+++++..++..+|.+++++|.
T Consensus        87 n~~~---I-k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~-~~-~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~  159 (254)
T PF04826_consen   87 NQEQ---I-KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND-YH-HML-ANYIPDLLSLLSSGSEKTKVQVLKVLV  159 (254)
T ss_pred             hHHH---H-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc-hh-hhH-HhhHHHHHHHHHcCChHHHHHHHHHHH
Confidence            4332   2 2467777775543  378999999999999986533 23 333 357999999999999999999999999


Q ss_pred             HhcccCChHhHHHHHHhhcHHHHHhhhcCC-ChhHHHHHHHHHHHhhcCCcc-------------hHHHHHhhcCchHHH
Q 008827          360 NLIFLAEDKCKEEIFMELTASLLASLICDP-EPSVQEQALALVRNLVDGRIN-------------SVEYIFAEDGIILDA  425 (552)
Q Consensus       360 ~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~-------------~~~~i~~~~~~~~~~  425 (552)
                      ||+.  +|....+++...+...++.+++.+ +.++...++.++.|+..+-..             ..-.+|.+.+.+-+.
T Consensus       160 nLS~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~  237 (254)
T PF04826_consen  160 NLSE--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKK  237 (254)
T ss_pred             Hhcc--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHH
Confidence            9976  567888899889999999999865 677899999999999755211             111333333334455


Q ss_pred             HHHHhcccCchhHHHHH
Q 008827          426 VGRQLRIASKAEIEIQG  442 (552)
Q Consensus       426 l~~~L~~~~~~~v~~~a  442 (552)
                      +..+..+ ++++|++..
T Consensus       238 l~~l~~h-~d~ev~~~v  253 (254)
T PF04826_consen  238 LQALANH-PDPEVKEQV  253 (254)
T ss_pred             HHHHHcC-CCHHHhhhc
Confidence            5555555 888887653

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.53  E-value=7.3e-11  Score=115.46  Aligned_cols=500  Identities=15%  Similarity=0.123  Sum_probs=286.4

Q ss_pred             CCCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCC-CcchHHHHHHHHhhcCChhhHHHHHhcCch--
Q 008827            3 LLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNES-ENVSGLGASIISHSCKTSLEQKLLFDAGVL--   79 (552)
Q Consensus         3 ~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~-~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i--   79 (552)
                      |.++.++....|.+.+..+...-... ..+  ++.+..+++-...+. .+....+..++.+.|........+...+++  
T Consensus       103 L~s~epr~~~~Aaql~aaIA~~Elp~-~~w--p~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~  179 (858)
T COG5215         103 LKSPEPRFCTMAAQLLAAIARMELPN-SLW--PGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILF  179 (858)
T ss_pred             hcCCccHHHHHHHHHHHHHHHhhCcc-ccc--hHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHH
Confidence            55677778888888888775432111 111  234445555554444 457788999999998765544444444432  


Q ss_pred             HHHHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhccccCCcc-HHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcc
Q 008827           80 KRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRT-LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYL  156 (552)
Q Consensus        80 ~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~-l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~  156 (552)
                      .....-++.  +..+|..++.||..=+.+-   ..-+.......+ +..+.+..+.++.+++.+|-.||..+....-...
T Consensus       180 aiv~ga~k~et~~avRLaaL~aL~dsl~fv---~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm  256 (858)
T COG5215         180 AIVMGALKNETTSAVRLAALKALMDSLMFV---QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFM  256 (858)
T ss_pred             HHHHhhcccCchHHHHHHHHHHHHHHHHHH---HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            222233443  4589999999997722111   001111111222 3345667889999999999999999876432211


Q ss_pred             hhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHH------------H----HHHHHhCcHHHHHHhhhcCCC
Q 008827          157 QDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDM------------Q----KLAFEVNGVDKLYNHLQKGSL  219 (552)
Q Consensus       157 ~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~------------~----~~~~~~~~i~~L~~~L~~~~~  219 (552)
                      + ...+.-......+.++ .+++|...+...-+.+...+-+.            +    ....-.+.+|.|+++|....+
T Consensus       257 ~-~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~e  335 (858)
T COG5215         257 Q-SYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGE  335 (858)
T ss_pred             H-HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCC
Confidence            2 2222333334445555 23445444433222222111100            0    011123457888888866432


Q ss_pred             Ch-------------------------------------------hhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHH
Q 008827          220 HP-------------------------------------------RRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD  256 (552)
Q Consensus       220 ~~-------------------------------------------~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~  256 (552)
                      ++                                           .-|+.++.+++++..........-.-.+.+|.+..
T Consensus       336 d~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n  415 (858)
T COG5215         336 DYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIEN  415 (858)
T ss_pred             CccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHH
Confidence            22                                           13688888888887543322222223468999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc---CCCHHHHHHHHHHHHHhhcCCchhHH---HH
Q 008827          257 ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD---DTSTAVQVAALGAISNIVVDFTTRRS---TF  330 (552)
Q Consensus       257 ~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~---~~~~~v~~~a~~aL~nl~~~~~~~~~---~~  330 (552)
                      .+.++..-++..++||++.++.+....    +-..|-++..++-+-   .++|.+..+++|...|++.+..+...   .+
T Consensus       416 ~m~D~~l~vk~ttAwc~g~iad~va~~----i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~  491 (858)
T COG5215         416 EMSDSCLWVKSTTAWCFGAIADHVAMI----ISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESF  491 (858)
T ss_pred             hcccceeehhhHHHHHHHHHHHHHHHh----cCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccch
Confidence            999999999999999999998875432    222344444444321   34678889999999999976654321   11


Q ss_pred             Hh---hCcHHHHHHhhc--CCCHHHHHHHHHHHHHhcccCChHhHHHHHH---------hhcHHHHHhhhcCCC----hh
Q 008827          331 IR---LGGVKLLVQLSK--SMDSTIRLNALRALRNLIFLAEDKCKEEIFM---------ELTASLLASLICDPE----PS  392 (552)
Q Consensus       331 ~~---~g~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~---------~~~~~~l~~ll~~~~----~~  392 (552)
                      +-   ...+..|++-..  ..+...|..+-.+|+.+....+....+.+..         ...+..+-+.+...|    .+
T Consensus       492 l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~e  571 (858)
T COG5215         492 LAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEE  571 (858)
T ss_pred             hHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            10   123333333221  2345567777777777654332111111110         001222222333222    46


Q ss_pred             HHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhh
Q 008827          393 VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKA  472 (552)
Q Consensus       393 v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~  472 (552)
                      +|.+-+..|..+....+..++.+-..   +++++.++|++.....+......++++++..-++..+...        ..+
T Consensus       572 lqSN~~~vl~aiir~~~~~ie~v~D~---lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~--------~~f  640 (858)
T COG5215         572 LQSNYIGVLEAIIRTRRRDIEDVEDQ---LMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYA--------SKF  640 (858)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccHHHH---HHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHH--------hhh
Confidence            77777888877776655444433222   6889999999843445677788899999875444444333        577


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC
Q 008827          473 QSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP  529 (552)
Q Consensus       473 v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~  529 (552)
                      +|.|.+.|+..|.-+...|+..++.++-     +-+-.-..+..-....|++.+.++
T Consensus       641 iPyl~~aln~~d~~v~~~avglvgdlan-----tl~~df~~y~d~~ms~LvQ~lss~  692 (858)
T COG5215         641 IPYLTRALNCTDRFVLNSAVGLVGDLAN-----TLGTDFNIYADVLMSSLVQCLSSE  692 (858)
T ss_pred             hHHHHHHhcchhHHHHHHHHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHHhcCh
Confidence            8999999988899999999999999984     211112222333456788877643

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.51  E-value=4e-12  Score=117.89  Aligned_cols=231  Identities=19%  Similarity=0.221  Sum_probs=174.3

Q ss_pred             hhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCC
Q 008827          288 FMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAE  366 (552)
Q Consensus       288 ~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  366 (552)
                      +.+.+-++.|+.+|+ ..||.+++.|..+++|.+. ++..+..+.+.|+++.+..++.++++.+|..|++++.|++... 
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-   85 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-   85 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-
Confidence            456778899999998 5699999999999999874 6677888899999999999999999999999999999997743 


Q ss_pred             hHhHHHHHHhhcHHHHHhhhcC--CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHH
Q 008827          367 DKCKEEIFMELTASLLASLICD--PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMY  444 (552)
Q Consensus       367 ~~~~~~i~~~~~~~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~  444 (552)
                       +++..+ +. .++.+.+.+.+  .+..+|..++++|+|++..+.  ...++..   .++.+.++|.+ ++..++.+++.
T Consensus        86 -en~~~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~--~~~~l~~---~i~~ll~LL~~-G~~~~k~~vLk  156 (254)
T PF04826_consen   86 -ENQEQI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND--YHHMLAN---YIPDLLSLLSS-GSEKTKVQVLK  156 (254)
T ss_pred             -hhHHHH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc--hhhhHHh---hHHHHHHHHHc-CChHHHHHHHH
Confidence             344444 22 45666654433  467899999999999986643  2333332   47778888888 89999999999


Q ss_pred             HHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC-ChhHHHHHHHHHHhhcCCC--C-------CCCH-HHHHHH
Q 008827          445 VLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSRLRTAAVWAVLNLTCSS--S-------PGSS-GRLVKL  513 (552)
Q Consensus       445 ~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~~~a~~~l~~l~~~~--~-------~~~~-~~~~~l  513 (552)
                      +|.|++.. ++....++.       ..+++.++.++.++ +.++...+.+...|+...-  +       .-+. .-...+
T Consensus       157 ~L~nLS~n-p~~~~~Ll~-------~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~  228 (254)
T PF04826_consen  157 VLVNLSEN-PDMTRELLS-------AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLF  228 (254)
T ss_pred             HHHHhccC-HHHHHHHHh-------ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHH
Confidence            99999984 445566665       67788999999875 5678889999999995321  1       1111 112334


Q ss_pred             HHCC-cHHHHHhhhcCCCccHHHHH
Q 008827          514 HDAG-IVSHVKNMVNDPCLDVKLRV  537 (552)
Q Consensus       514 ~~~g-~~~~L~~ll~~~~~~v~~~a  537 (552)
                      .+.+ .-+.|..+...++++||+++
T Consensus       229 ~e~~~~~~~l~~l~~h~d~ev~~~v  253 (254)
T PF04826_consen  229 GESSQLAKKLQALANHPDPEVKEQV  253 (254)
T ss_pred             ccHHHHHHHHHHHHcCCCHHHhhhc
Confidence            4444 44677778888899999875

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=7.8e-11  Score=119.12  Aligned_cols=431  Identities=16%  Similarity=0.119  Sum_probs=269.4

Q ss_pred             hHHHHHhhcCCHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHH-Hh-cCChhhHHHHHHHHHHHhhhCCCcc
Q 008827           79 LKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEI-VK-DRFARTRLLASLCLIVIRNASPCYL  156 (552)
Q Consensus        79 i~~L~~lL~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~l-l~-~~~~~vr~~A~~~L~~l~~~~~~~~  156 (552)
                      ++.|...++.+..++..|-.-|..++.+|  .         ...+..+.+- .+ ......|..|...|.|-....+.+.
T Consensus         4 ~~~le~tlSpD~n~~~~Ae~~l~~~~~~n--f---------~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~   72 (859)
T KOG1241|consen    4 LELLEKTLSPDQNVRKRAEKQLEQAQSQN--F---------PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPER   72 (859)
T ss_pred             HHHHHHHcCCCcchHHHHHHHHHHHHhcc--H---------HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHH
Confidence            45555556666677778877777766543  1         1223333332 23 3456778888888887555443211


Q ss_pred             h----------hhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCC---CChh
Q 008827          157 Q----------DVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS---LHPR  222 (552)
Q Consensus       157 ~----------~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~---~~~~  222 (552)
                      +          +...+..+-..+.+-|. ..++....|+++++.++..+-.       .+.+|-|+..|.+.-   ....
T Consensus        73 k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP-------~n~wp~li~~lv~nv~~~~~~~  145 (859)
T KOG1241|consen   73 KQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELP-------QNQWPELIVTLVSNVGEEQASM  145 (859)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCc-------hhhCHHHHHHHHHhcccccchH
Confidence            1          01112223333445555 4567778888998888753321       344566665554321   1224


Q ss_pred             hHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC--CCCHHHHHHHHHHHHHhhc-ccccccchhhhccCcHHHHHH
Q 008827          223 RFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA--HDSSDVRSAACMCLRSVSR-SIKNLSAGSFMNETIVIPLVR  299 (552)
Q Consensus       223 ~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~--~~~~~v~~~a~~~L~~ls~-~~~~~~~~~~~~~~~i~~Lv~  299 (552)
                      +++..+.+++.+|.+-..-...-....++-.++..++  .++..||.+|..+|.+--. ...+.+.. ....=++...+.
T Consensus       146 ~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E-~ern~iMqvvcE  224 (859)
T KOG1241|consen  146 VKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNE-MERNYIMQVVCE  224 (859)
T ss_pred             HHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccH-hhhceeeeeeee
Confidence            8899999999999753221111112346777777776  4578999999999986422 11233333 222334555666


Q ss_pred             hhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHH------
Q 008827          300 LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEI------  373 (552)
Q Consensus       300 lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i------  373 (552)
                      .-+.+|.+++.+|..+|..++.-+....+..++......-+.-+++++++|...++..=+++|... .+.-.+.      
T Consensus       225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEE-iD~~~e~~e~~d~  303 (859)
T KOG1241|consen  225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEE-IDLAIEYGEAVDQ  303 (859)
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc
Confidence            667899999999999999998766666666666777777888889999999999998888777521 1111111      


Q ss_pred             ---------H---HhhcHHHHHhhhcC-------CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccC
Q 008827          374 ---------F---MELTASLLASLICD-------PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS  434 (552)
Q Consensus       374 ---------~---~~~~~~~l~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~  434 (552)
                               .   -..++|.|+++|..       +++..-..|-.+|.-++....+   .++..   +++.+-..+++ +
T Consensus       304 ~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~---Vl~Fiee~i~~-p  376 (859)
T KOG1241|consen  304 GLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPH---VLPFIEENIQN-P  376 (859)
T ss_pred             CCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc---cchhh---hHHHHHHhcCC-c
Confidence                     0   12467888888843       3345555555555444322211   12221   55666666777 8


Q ss_pred             chhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 008827          435 KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLH  514 (552)
Q Consensus       435 ~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~  514 (552)
                      +..-++.+..+++.+-.|.+..+..-+-       .+++|.++.++.++.-.++..++|+++.++.   .-..-..-...
T Consensus       377 dwr~reaavmAFGSIl~gp~~~~Lt~iV-------~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d---~l~e~~~n~~~  446 (859)
T KOG1241|consen  377 DWRNREAAVMAFGSILEGPEPDKLTPIV-------IQALPSIINLMSDPSLWVKDTAAWTLGRIAD---FLPEAIINQEL  446 (859)
T ss_pred             chhhhhHHHHHHHhhhcCCchhhhhHHH-------hhhhHHHHHHhcCchhhhcchHHHHHHHHHh---hchhhcccHhh
Confidence            9999999999999999877644433332       5788999999998888999999999999984   11111111122


Q ss_pred             HCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          515 DAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       515 ~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      ..+.++.+.+=++| .|.+...++||+..+.+-
T Consensus       447 l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea  478 (859)
T KOG1241|consen  447 LQSKLSALLEGLND-EPRVASNVCWAFISLAEA  478 (859)
T ss_pred             hhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHH
Confidence            33445555554444 788999999999998864

>PTZ00429 beta-adaptin; Provisional

Probab=99.45  E-value=4.1e-09  Score=112.20  Aligned_cols=327  Identities=12%  Similarity=0.141  Sum_probs=194.6

Q ss_pred             cchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhh
Q 008827           36 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF  114 (552)
Q Consensus        36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~  114 (552)
                      -++..+.+-++++++.+|-.|..+++++.. ++.-     .-.++++.+.+.+ ++-||..|+.|+.++-..+++...  
T Consensus       105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir~-~~i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~--  176 (746)
T PTZ00429        105 LAVNTFLQDTTNSSPVVRALAVRTMMCIRV-SSVL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY--  176 (746)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-HHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc--
Confidence            356778888888999999999999998863 2211     1234566677765 788999999999998766655421  


Q ss_pred             ccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcC
Q 008827          115 VGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAE  193 (552)
Q Consensus       115 ~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~  193 (552)
                          ..+.++.+.+++.|.++.|..+|..+|..+....+..   .....+.+..|+..+.+. ++.+.....+|....-.
T Consensus       177 ----~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~---l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~  249 (746)
T PTZ00429        177 ----QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK---IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS  249 (746)
T ss_pred             ----ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh---hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Confidence                2456778888999999999999999999997755431   123345566666666653 34466666666543222


Q ss_pred             CHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCC-hhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHH
Q 008827          194 KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL-ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMC  272 (552)
Q Consensus       194 ~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~  272 (552)
                      +....     ...+..+...|++.+  +.+...|++++.++.... ++...... ..+-+.++.+ .++++++|..++..
T Consensus       250 ~~~e~-----~~il~~l~~~Lq~~N--~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~  320 (746)
T PTZ00429        250 DKESA-----ETLLTRVLPRMSHQN--PAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKN  320 (746)
T ss_pred             CcHHH-----HHHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHH
Confidence            21111     234556666677664  778888999888886532 22222211 1123555555 45677899999888


Q ss_pred             HHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHH
Q 008827          273 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL  352 (552)
Q Consensus       273 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~  352 (552)
                      |..+....+.     +... -+...+-...|+. .++......|..++... + ..     .++..|.++..+.+.+++.
T Consensus       321 I~~i~~~~P~-----lf~~-~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~-N-v~-----~IL~EL~eYa~d~D~ef~r  386 (746)
T PTZ00429        321 IHALLVIFPN-----LLRT-NLDSFYVRYSDPP-FVKLEKLRLLLKLVTPS-V-AP-----EILKELAEYASGVDMVFVV  386 (746)
T ss_pred             HHHHHHHCHH-----HHHH-HHHhhhcccCCcH-HHHHHHHHHHHHHcCcc-c-HH-----HHHHHHHHHhhcCCHHHHH
Confidence            8777654322     1111 1222223333433 36777777777666432 1 11     1335556666666667777


Q ss_pred             HHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827          353 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  407 (552)
Q Consensus       353 ~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  407 (552)
                      .++.++++++...+ ..     ....++.|++++.+... +..+++..++++...
T Consensus       387 ~aIrAIg~lA~k~~-~~-----a~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrk  434 (746)
T PTZ00429        387 EVVRAIASLAIKVD-SV-----APDCANLLLQIVDRRPE-LLPQVVTAAKDIVRK  434 (746)
T ss_pred             HHHHHHHHHHHhCh-HH-----HHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHH
Confidence            77777777764322 11     12234445555543222 233445555555443

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.42  E-value=3e-12  Score=106.54  Aligned_cols=118  Identities=26%  Similarity=0.288  Sum_probs=107.4

Q ss_pred             HHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 008827          244 RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF  323 (552)
Q Consensus       244 ~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~  323 (552)
                      .+.+.|+++.++++++++++.++..++.+|.+++...+..+.. +.+.|++|.++.++.+++++++..|+++|+|++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQA-VVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHH-HHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            3567899999999999999999999999999999875555555 778899999999999999999999999999999887


Q ss_pred             chhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827          324 TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI  362 (552)
Q Consensus       324 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  362 (552)
                      +.....+.+.|+++.+++++.+++..++..++++|.+++
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            777778888999999999999999999999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.39  E-value=1e-11  Score=103.23  Aligned_cols=117  Identities=28%  Similarity=0.283  Sum_probs=108.1

Q ss_pred             hhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCCh
Q 008827          288 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED  367 (552)
Q Consensus       288 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  367 (552)
                      +.+.|+++.++.++.+++++++..++++|++++.+.+.....+.+.|+++.+++++.++++.++..++++|++++.+ .+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~-~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG-PE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC-cH
Confidence            56789999999999999999999999999999988778888888899999999999999999999999999999984 44


Q ss_pred             HhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827          368 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV  405 (552)
Q Consensus       368 ~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~  405 (552)
                      ..+..+...|.++.+.+++.+++.++++.++++|++++
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            57777888899999999999999999999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.27  E-value=3.6e-09  Score=104.68  Aligned_cols=324  Identities=17%  Similarity=0.145  Sum_probs=213.1

Q ss_pred             hHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHHHHHh-----CcHHHHHHhhhcCCCChhhHHHHHHHHHHhhc
Q 008827          164 KLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEV-----NGVDKLYNHLQKGSLHPRRFEGILLALADMCS  236 (552)
Q Consensus       164 g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~  236 (552)
                      .....++.++.  ..+++.......+..|..+++.....+.+.     +...+++.+|..+  +.-+...+...++.+..
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~--d~~i~~~a~~iLt~l~~  130 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQ--DQFIVHMSFSILAKLAC  130 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCC--chhHHHHHHHHHHHHHh
Confidence            45566666665  234455556666666666666554555543     4567788877654  35678888888888865


Q ss_pred             CChhHHHHHHhcccHHHHHHhcCCC-CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC--CCHHHHHHHH
Q 008827          237 KLECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD--TSTAVQVAAL  313 (552)
Q Consensus       237 ~~~~~~~~~~~~~~l~~lv~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~  313 (552)
                      ..............++.+...++.+ +...+..++.++..|-+. +..|.. |...++++.|+.+|+.  .+..++..++
T Consensus       131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~-f~~~~~v~~L~~~L~~~~~~~Ql~Y~~l  208 (429)
T cd00256         131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFA-FVLADGVPTLVKLLSNATLGFQLQYQSI  208 (429)
T ss_pred             cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHH-HHHccCHHHHHHHHhhccccHHHHHHHH
Confidence            3322111111111344555566543 467788888999999887 566766 7788899999999974  2668999999


Q ss_pred             HHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhcccC-----ChHhHHHHHHhhcHHHHHhhhc
Q 008827          314 GAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLA-----EDKCKEEIFMELTASLLASLIC  387 (552)
Q Consensus       314 ~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~-----~~~~~~~i~~~~~~~~l~~ll~  387 (552)
                      .++.-++.... ....+.+.+.++.++++++.. .+++.+-++.++.|+....     .......+++.+..+.+..+..
T Consensus       209 l~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~  287 (429)
T cd00256         209 FCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQ  287 (429)
T ss_pred             HHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhc
Confidence            99998886543 444566679999999999864 5778888999999997632     1123345555555554444432


Q ss_pred             --CCChhHHHHHHHHHHHh-------h--------------cCCcchH-HHHHh-------h-cCchHHHHHHHhcccCc
Q 008827          388 --DPEPSVQEQALALVRNL-------V--------------DGRINSV-EYIFA-------E-DGIILDAVGRQLRIASK  435 (552)
Q Consensus       388 --~~~~~v~~~a~~~L~~l-------~--------------~~~~~~~-~~i~~-------~-~~~~~~~l~~~L~~~~~  435 (552)
                        -.|+++.+..-.+-..+       +              ...|.+. +..+.       + +..++..|..+|..+.+
T Consensus       288 rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d  367 (429)
T cd00256         288 RKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVD  367 (429)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCC
Confidence              34555544322111111       1              0112221 12222       2 22378889999976678


Q ss_pred             hhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          436 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       436 ~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                      +.+..-||+-|+.++..-|..+. ++++      -|+-..+++++.++|++||.+|..|+..+.
T Consensus       368 ~~~laVAc~Dige~vr~~P~gr~-i~~~------lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         368 PIILAVACHDIGEYVRHYPRGKD-VVEQ------LGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             cceeehhhhhHHHHHHHCccHHH-HHHH------cCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            88999999999999987765444 5552      788899999999999999999999998875

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=1.2e-08  Score=98.42  Aligned_cols=393  Identities=11%  Similarity=0.113  Sum_probs=253.4

Q ss_pred             CcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHH
Q 008827           50 ENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE  128 (552)
Q Consensus        50 ~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~  128 (552)
                      +.....|...|-|++.+-......++.+.+..|+..|.. +.+.......-|-.++-..++. ..+   ...+.+..+++
T Consensus       277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK-~~M---~~~~iveKL~k  352 (791)
T KOG1222|consen  277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENK-IVM---EQNGIVEKLLK  352 (791)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccch-HHH---HhccHHHHHHH
Confidence            344466777788888666666677888999999999985 4455555555555554332221 111   13678889999


Q ss_pred             HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHH
Q 008827          129 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVD  208 (552)
Q Consensus       129 ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  208 (552)
                      ++...+++.+....+.+.|++..+..  +..++..|.+|.|..+++++.. ..-|...+..++.++. .+.-+....+|+
T Consensus       353 lfp~~h~dL~~~tl~LlfNlSFD~gl--r~KMv~~GllP~l~~ll~~d~~-~~iA~~~lYh~S~dD~-~K~MfayTdci~  428 (791)
T KOG1222|consen  353 LFPIQHPDLRKATLMLLFNLSFDSGL--RPKMVNGGLLPHLASLLDSDTK-HGIALNMLYHLSCDDD-AKAMFAYTDCIK  428 (791)
T ss_pred             hcCCCCHHHHHHHHHHhhhccccccc--cHHHhhccchHHHHHHhCCccc-chhhhhhhhhhccCcH-HHHHHHHHHHHH
Confidence            99999999999999999999987643  5678999999999999975432 2235556666666554 344455678899


Q ss_pred             HHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHh-cCCCCHHHHHHHHHHHHHhhcccccccchh
Q 008827          209 KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDA-LAHDSSDVRSAACMCLRSVSRSIKNLSAGS  287 (552)
Q Consensus       209 ~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~-L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~  287 (552)
                      .+++.+-... ..++-...+..--++|.+ ..+.+.+.+-+++..+.+. ++..++-+    .+.+++++.+.+..... 
T Consensus       429 ~lmk~v~~~~-~~~vdl~lia~ciNl~ln-kRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~-  501 (791)
T KOG1222|consen  429 LLMKDVLSGT-GSEVDLALIALCINLCLN-KRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNM-  501 (791)
T ss_pred             HHHHHHHhcC-CceecHHHHHHHHHHHhc-cccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHH-
Confidence            9998665553 222222222222466653 3333445555577776653 44555533    45688998874433322 


Q ss_pred             hhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccc
Q 008827          288 FMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--DSTIRLNALRALRNLIFL  364 (552)
Q Consensus       288 ~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~  364 (552)
                      |.  .++..|...+. +.+++...++.++++|+....-++.+.+.+.+.+|.+-..++.+  ..++....+-+++.++..
T Consensus       502 Fi--dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d  579 (791)
T KOG1222|consen  502 FI--DYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD  579 (791)
T ss_pred             HH--HHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh
Confidence            33  56667777776 56778899999999999876667776777788999998877753  244666666666666552


Q ss_pred             CChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccc-CchhHHHHHH
Q 008827          365 AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGM  443 (552)
Q Consensus       365 ~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~-~~~~v~~~a~  443 (552)
                      .  .+..-+...+.++.++++|                                            +.. .+++...+.+
T Consensus       580 ~--~cA~Lla~a~~i~tlieLL--------------------------------------------~a~QeDDEfV~Qii  613 (791)
T KOG1222|consen  580 L--DCARLLAPAKLIDTLIELL--------------------------------------------QACQEDDEFVVQII  613 (791)
T ss_pred             h--HHHHHhCccccHHHHHHHH--------------------------------------------HhhcccchHHHHHH
Confidence            2  2222222333444444444                                            321 2344555555


Q ss_pred             HHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHC
Q 008827          444 YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDA  516 (552)
Q Consensus       444 ~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~  516 (552)
                      ++...+... +..++.++.      +...-..++.++++.|.++|+-|-.+|--++.    ...|+.+++..+
T Consensus       614 yVF~Q~l~H-e~tr~~mik------et~~~AylIDLMHDkN~eiRkVCDn~LdIiae----~d~EWAKrI~~E  675 (791)
T KOG1222|consen  614 YVFLQFLKH-ELTRRLMIK------ETALGAYLIDLMHDKNAEIRKVCDNALDIIAE----HDKEWAKRIAGE  675 (791)
T ss_pred             HHHHHHHHH-HHHHHHHHh------hccchHHHHHHHhcccHHHHHHHHHHHHHHHH----hhHHHHHHHhhh
Confidence            555555543 334555553      24455689999999999999999888887774    456777776543

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=9.2e-09  Score=99.11  Aligned_cols=387  Identities=11%  Similarity=0.080  Sum_probs=264.6

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhc
Q 008827            8 MEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG   87 (552)
Q Consensus         8 ~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~   87 (552)
                      ..+.+.|+-.|.++..-.... ..+.....+..|+..|.-.+.+....+.+.|.+++-..+++....+.|.++.|+++..
T Consensus       277 eqLLrva~ylLlNlAed~~~E-lKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp  355 (791)
T KOG1222|consen  277 EQLLRVAVYLLLNLAEDISVE-LKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFP  355 (791)
T ss_pred             HHHHHHHHHHHHHHhhhhhHH-HHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcC
Confidence            456777888888875433222 3445678889999999877788889999999999989999999999999999999999


Q ss_pred             C-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHH
Q 008827           88 G-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLI  166 (552)
Q Consensus        88 ~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i  166 (552)
                      . .+..+...++.+.+++++.... .+++   .+|.+|.+..++.++.-  +-.|...++.++....  .+..+....++
T Consensus       356 ~~h~dL~~~tl~LlfNlSFD~glr-~KMv---~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~--~K~MfayTdci  427 (791)
T KOG1222|consen  356 IQHPDLRKATLMLLFNLSFDSGLR-PKMV---NGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD--AKAMFAYTDCI  427 (791)
T ss_pred             CCCHHHHHHHHHHhhhcccccccc-HHHh---hccchHHHHHHhCCccc--chhhhhhhhhhccCcH--HHHHHHHHHHH
Confidence            7 6788889999999998876444 3443   37899999999886543  3457778888877543  34456667899


Q ss_pred             HHHHHhcCC--CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHH
Q 008827          167 NNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSR  244 (552)
Q Consensus       167 ~~Lv~ll~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~  244 (552)
                      +.+++.+-.  +.+|-.......-|++-.. .+.+.+.+..|+..|++.--.. .++ +.   ...+.+++.++...+..
T Consensus       428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~-~D~-lL---mK~vRniSqHeg~tqn~  501 (791)
T KOG1222|consen  428 KLLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKS-RDL-LL---MKVVRNISQHEGATQNM  501 (791)
T ss_pred             HHHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcc-cch-HH---HHHHHHhhhccchHHHH
Confidence            999887653  3344333322233555333 3345567788899998743332 122 22   34556666655555555


Q ss_pred             HHhcccHHHHHHhcCC-CCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhc
Q 008827          245 CLSLQVLKLVVDALAH-DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD--TSTAVQVAALGAISNIVV  321 (552)
Q Consensus       245 ~~~~~~l~~lv~~L~~-~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~  321 (552)
                      +++  .+.-+...++. .+......+.+.+.+|.-..-.-... +.....+|-+=..|+.  ...+++...+-+++.++.
T Consensus       502 Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~i-lq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~  578 (791)
T KOG1222|consen  502 FID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKI-LQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR  578 (791)
T ss_pred             HHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHH-HhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh
Confidence            554  44455555553 44556667777777776542221212 4556778877777752  244677778888888776


Q ss_pred             CCchhHHHHHhhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhcccCChHhHHHHH-HhhcHHHHHhhhcCCChhHHHHHH
Q 008827          322 DFTTRRSTFIRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKCKEEIF-MELTASLLASLICDPEPSVQEQAL  398 (552)
Q Consensus       322 ~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~i~-~~~~~~~l~~ll~~~~~~v~~~a~  398 (552)
                      +. .+...+..+|.++.++++++.  .+.+...+.+.....+..+.  ..+..++ +...-..++.++.+.+.+++..+-
T Consensus       579 d~-~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He--~tr~~miket~~~AylIDLMHDkN~eiRkVCD  655 (791)
T KOG1222|consen  579 DL-DCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHE--LTRRLMIKETALGAYLIDLMHDKNAEIRKVCD  655 (791)
T ss_pred             hh-HHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--HHHHHHHhhccchHHHHHHHhcccHHHHHHHH
Confidence            53 445567778999999999986  46677777888777777652  2344444 555677899999999999999888


Q ss_pred             HHHHHhhcCCcchHHHH
Q 008827          399 ALVRNLVDGRINSVEYI  415 (552)
Q Consensus       399 ~~L~~l~~~~~~~~~~i  415 (552)
                      .+|--++..+.+-.+.+
T Consensus       656 n~LdIiae~d~EWAKrI  672 (791)
T KOG1222|consen  656 NALDIIAEHDKEWAKRI  672 (791)
T ss_pred             HHHHHHHHhhHHHHHHH
Confidence            88877777765444433

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.16  E-value=3.8e-08  Score=97.51  Aligned_cols=322  Identities=13%  Similarity=0.095  Sum_probs=221.0

Q ss_pred             CchHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhccc--cCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhC
Q 008827           77 GVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGP--DTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNAS  152 (552)
Q Consensus        77 g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~--~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~  152 (552)
                      ..+..++.+|..  .+.+....+.-+..|..+++.....+.+.  .+.+....++.+++.+|..+...|+..|..+...+
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~  132 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG  132 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence            456778888875  45777788888888888887766555432  12456677788999999999999999999998765


Q ss_pred             CCcchhhhhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHH
Q 008827          153 PCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLA  230 (552)
Q Consensus       153 ~~~~~~~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~a  230 (552)
                      +... +........+.|...++  ++.+.+..+..+|..|....+ ++..+.+.++++.|+++|+........+-.++.+
T Consensus       133 ~~~~-~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         133 LAKM-EGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             cccc-chhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            4321 11112224455666665  345667777889988886654 4667778889999999998753345678889999


Q ss_pred             HHHhhcCChhHHHHHHhcccHHHHHHhcCCC-CHHHHHHHHHHHHHhhcccc------cccchhhhccCcHHHHHHhhcC
Q 008827          231 LADMCSKLECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIK------NLSAGSFMNETIVIPLVRLLDD  303 (552)
Q Consensus       231 L~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~-~~~v~~~a~~~L~~ls~~~~------~~~~~~~~~~~~i~~Lv~lL~~  303 (552)
                      ++-++.+. +........+.++.++++++.. -..+.+-++.+++|+.....      ..... +++.|+ +++++.|+.
T Consensus       211 lWlLSF~~-~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~-mv~~~l-~~~l~~L~~  287 (429)
T cd00256         211 IWLLTFNP-HAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQ-MVQCKV-LKTLQSLEQ  287 (429)
T ss_pred             HHHHhccH-HHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHH-HHHcCh-HHHHHHHhc
Confidence            99998654 4555566778999999999865 56788888999999976421      11112 455555 445555542


Q ss_pred             ---CCHHHHHHHHHH-------HHHhhcCCchhH------------------------HHHHhh--CcHHHHHHhhc-CC
Q 008827          304 ---TSTAVQVAALGA-------ISNIVVDFTTRR------------------------STFIRL--GGVKLLVQLSK-SM  346 (552)
Q Consensus       304 ---~~~~v~~~a~~a-------L~nl~~~~~~~~------------------------~~~~~~--g~i~~L~~ll~-~~  346 (552)
                         +|+++.+.-...       +..++ .++.+.                        ..+-+.  ..+..|++++. +.
T Consensus       288 rk~~DedL~edl~~L~e~L~~~~k~lt-sfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~  366 (429)
T cd00256         288 RKYDDEDLTDDLKFLTEELKNSVQDLS-SFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSV  366 (429)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence               466554322211       11111 111111                        122222  36788999985 45


Q ss_pred             CHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827          347 DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV  405 (552)
Q Consensus       347 ~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~  405 (552)
                      ++.+..-|+.=++.+++.- |..|..+-..|+-..+.+++.++|++|+.+|+.++..+.
T Consensus       367 d~~~laVAc~Dige~vr~~-P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         367 DPIILAVACHDIGEYVRHY-PRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             CcceeehhhhhHHHHHHHC-ccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            6777777888899998865 556766667889999999999999999999998887764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.16  E-value=1.3e-07  Score=95.76  Aligned_cols=446  Identities=15%  Similarity=0.144  Sum_probs=259.1

Q ss_pred             ccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CH----HHHHHHHHHHHHHhcCC
Q 008827           33 LQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SL----IQRDASLESIATIFKNN  107 (552)
Q Consensus        33 ~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~----~v~~~al~~L~~l~~~~  107 (552)
                      |...++-.+.+=+.++|+.....+..++..||..........+...+|.++....+ ..    +.-......-..+|   
T Consensus       633 yTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia---  709 (1172)
T KOG0213|consen  633 YTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIA---  709 (1172)
T ss_pred             hHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHH---
Confidence            34556777777788999999999999999999876654444444455544443322 00    00001111112222   


Q ss_pred             hhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-C--chhchHH
Q 008827          108 PEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-G--RVGDEAS  184 (552)
Q Consensus       108 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~--~v~~~a~  184 (552)
                          .++   .....+..++.-++|+++.-|...+.....+...-+....+....+..+..+.-.+++. .  .|.....
T Consensus       710 ----~Kv---G~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gf  782 (1172)
T KOG0213|consen  710 ----AKV---GSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGF  782 (1172)
T ss_pred             ----HHh---CchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhH
Confidence                111   12345566677788999988888887777765543322344455566666666666632 1  2333443


Q ss_pred             HHHHHhhcC--CHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH--HHHHHhcccHHHHHHhcCC
Q 008827          185 FAFSSLIAE--KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC--RSRCLSLQVLKLVVDALAH  260 (552)
Q Consensus       185 ~~L~~l~~~--~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~--~~~~~~~~~l~~lv~~L~~  260 (552)
                      .++.+-...  .+..      ...+..++..|.+.  .+++|++|+..++.++.--..+  -+.+...|  -.|.+.|..
T Consensus       783 g~V~~~lg~r~kpyl------pqi~stiL~rLnnk--sa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylge  852 (1172)
T KOG0213|consen  783 GTVVNALGGRVKPYL------PQICSTILWRLNNK--SAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGE  852 (1172)
T ss_pred             HHHHHHHhhccccch------HHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCc
Confidence            333322111  1110      11122333445554  5889999999999887521111  11222233  346788888


Q ss_pred             CCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch---hHHHHHhhCcHH
Q 008827          261 DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT---RRSTFIRLGGVK  337 (552)
Q Consensus       261 ~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~---~~~~~~~~g~i~  337 (552)
                      ..+++.-...+++..+.....-.... ---.+++|.|.-+|++.+..+++++...++.++...+.   .++++.   +-=
T Consensus       853 eypEvLgsILgAikaI~nvigm~km~-pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---Icf  928 (1172)
T KOG0213|consen  853 EYPEVLGSILGAIKAIVNVIGMTKMT-PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICF  928 (1172)
T ss_pred             ccHHHHHHHHHHHHHHHHhccccccC-CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHH
Confidence            99999887777777776543211111 12358899999999999999999999999999875543   233332   223


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHH---HH--HHHHHhhcCCcchH
Q 008827          338 LLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQ---AL--ALVRNLVDGRINSV  412 (552)
Q Consensus       338 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~---a~--~~L~~l~~~~~~~~  412 (552)
                      -|+++|++-+..+|.+|..+++.++....|           -+.|..||+.-  ++|+.   .+  -++.-.+..+.   
T Consensus       929 eLlelLkahkK~iRRaa~nTfG~IakaIGP-----------qdVLatLlnnL--kvqeRq~RvcTtvaIaIVaE~c~---  992 (1172)
T KOG0213|consen  929 ELLELLKAHKKEIRRAAVNTFGYIAKAIGP-----------QDVLATLLNNL--KVQERQNRVCTTVAIAIVAETCG---  992 (1172)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHhcCH-----------HHHHHHHHhcc--hHHHHHhchhhhhhhhhhhhhcC---
Confidence            466778888899999999999999775443           33444444432  22221   11  11111111110   


Q ss_pred             HHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCC-hhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHH
Q 008827          413 EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK-ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAA  491 (552)
Q Consensus       413 ~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a  491 (552)
                        .|.    +++.|+.=... |+..||...+.+++.+..-- +...+ .+        ..+.|.|...|-+.|...|..|
T Consensus       993 --pFt----VLPalmneYrt-Pe~nVQnGVLkalsf~Feyigemskd-Yi--------yav~PlleDAlmDrD~vhRqta 1056 (1172)
T KOG0213|consen  993 --PFT----VLPALMNEYRT-PEANVQNGVLKALSFMFEYIGEMSKD-YI--------YAVTPLLEDALMDRDLVHRQTA 1056 (1172)
T ss_pred             --chh----hhHHHHhhccC-chhHHHHhHHHHHHHHHHHHHHHhhh-HH--------HHhhHHHHHhhccccHHHHHHH
Confidence              011    44444433333 67778888888888765411 11122 22        3456778888888999999999


Q ss_pred             HHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhc-------CCCccHHHHHHHHHHHHh
Q 008827          492 VWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN-------DPCLDVKLRVKTALEQFN  545 (552)
Q Consensus       492 ~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~-------~~~~~v~~~a~~al~~~~  545 (552)
                      +.++.+++.+ ..|          -|..+.++.|++       +++|.|..+...+++.+.
T Consensus      1057 ~~~I~Hl~Lg-~~g----------~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r 1106 (1172)
T KOG0213|consen 1057 MNVIKHLALG-VPG----------TGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLR 1106 (1172)
T ss_pred             HHHHHHHhcC-CCC----------cCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHH
Confidence            9999999874 222          244444444432       566777766666665554

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=5e-09  Score=107.35  Aligned_cols=256  Identities=16%  Similarity=0.155  Sum_probs=195.0

Q ss_pred             HHHHHHhcCCC-CHHHHHHHHHHHHHh-hcccccccchhhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhH
Q 008827          251 LKLVVDALAHD-SSDVRSAACMCLRSV-SRSIKNLSAGSFMNETIVIPLVRLLDDT-STAVQVAALGAISNIVVDFTTRR  327 (552)
Q Consensus       251 l~~lv~~L~~~-~~~v~~~a~~~L~~l-s~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~  327 (552)
                      +..|++-|+.. ++..+..++.=++.+ +...+..-.. |--..++|.|+.+|+++ +.+++-.|++||.+|+...+...
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~-fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSG-FPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhcc-ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            45555555543 666665555444433 3332222223 55567899999999964 78999999999999999888888


Q ss_pred             HHHHhhCcHHHHHH-hhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhc
Q 008827          328 STFIRLGGVKLLVQ-LSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD  406 (552)
Q Consensus       328 ~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  406 (552)
                      ..+++.++||.|++ ++.-...++.++++.||..+.+.    ....++..|++...+..++--+..+|+.|+.+..|+|.
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~----H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR----HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh----ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88899999999996 55557789999999999999763    34688899999999999988888999999999999996


Q ss_pred             C-CcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCCh---hhHHHHHHHhhHhhhhhhHHHHHHhhcC
Q 008827          407 G-RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE---SHKEAVMDQLLLRAENKAQSCIIKFLQS  482 (552)
Q Consensus       407 ~-~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~---~~~~~i~~~~~~~~~~~~v~~Lv~lL~~  482 (552)
                      . .++...++++    .+|+|..+|+. .+.+..+.++-++..++.+..   +..+.+..       +|.+....++|.-
T Consensus       324 si~sd~f~~v~e----alPlL~~lLs~-~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-------~dLi~~~~qLlsv  391 (1051)
T KOG0168|consen  324 SIRSDEFHFVME----ALPLLTPLLSY-QDKKPIESVCICLTRIADGFQHGPDKLDQLCS-------HDLITNIQQLLSV  391 (1051)
T ss_pred             cCCCccchHHHH----HHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccChHHHHHHhc-------hhHHHHHHHHHhc
Confidence            6 4556677777    78999999988 788888999999998887543   33344443       8888988888875


Q ss_pred             CCh----hHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhc
Q 008827          483 NDS----RLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN  527 (552)
Q Consensus       483 ~~~----~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~  527 (552)
                      ...    .+....+..++.++.    +++...+.+.+.++...|..++.
T Consensus       392 t~t~Ls~~~~~~vIrmls~msS----~~pl~~~tl~k~~I~~~L~~il~  436 (1051)
T KOG0168|consen  392 TPTILSNGTYTGVIRMLSLMSS----GSPLLFRTLLKLDIADTLKRILQ  436 (1051)
T ss_pred             CcccccccchhHHHHHHHHHcc----CChHHHHHHHHhhHHHHHHHHHh
Confidence            432    344555666666664    66777888889999999999875

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.09  E-value=6.9e-07  Score=88.24  Aligned_cols=499  Identities=12%  Similarity=0.040  Sum_probs=279.0

Q ss_pred             CCcHHHHHHHHHHHHHHHcCCCCCCcccc-----------cccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHH
Q 008827            5 KSYMEVVDAGARSLKMIYQSKMAPKYDFL-----------QEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLL   73 (552)
Q Consensus         5 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~-----------~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l   73 (552)
                      ++.+.+...+--+|+|-...++..+..-+           ++.+=...++.|.++.+.....|++.+.-+++-     .+
T Consensus        52 ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~-----El  126 (858)
T COG5215          52 NSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARM-----EL  126 (858)
T ss_pred             CCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh-----hC
Confidence            44555555666666666555443321111           112224467788889999999999999988742     22


Q ss_pred             HhcCchHHHHHhhcC-----CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHH--HHhcCChhhHHHHHHHHH
Q 008827           74 FDAGVLKRLTSLLGG-----SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE--IVKDRFARTRLLASLCLI  146 (552)
Q Consensus        74 ~~~g~i~~L~~lL~~-----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~--ll~~~~~~vr~~A~~~L~  146 (552)
                      ...-|...+..+..+     ....+..++.+++.+|.....  +.+.. ..+..+-.++.  +-+..+..+|..|+++|.
T Consensus       127 p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P--e~li~-~sN~il~aiv~ga~k~et~~avRLaaL~aL~  203 (858)
T COG5215         127 PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP--EDLIQ-MSNVILFAIVMGALKNETTSAVRLAALKALM  203 (858)
T ss_pred             ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH--HHHHH-HhhHHHHHHHHhhcccCchHHHHHHHHHHHH
Confidence            333344444444432     237888999999999965322  11111 11334444444  334678899999999999


Q ss_pred             H-HhhhCCCcchhhhhHHhHHHHHHHhcC-----CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcH-HHHHHhhhcCCC
Q 008827          147 V-IRNASPCYLQDVGIKTKLINNLLELLD-----DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGV-DKLYNHLQKGSL  219 (552)
Q Consensus       147 ~-l~~~~~~~~~~~~~~~g~i~~Lv~ll~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i-~~L~~~L~~~~~  219 (552)
                      + +...     +..+-.++--..+++...     ++.+++..|..+|.++..-+-.+-+...+ +++ .......++++ 
T Consensus       204 dsl~fv-----~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~n-  276 (858)
T COG5215         204 DSLMFV-----QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQN-  276 (858)
T ss_pred             HHHHHH-----HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcc-
Confidence            8 3321     222222333334444433     33467888888888887544333232222 333 33344455543 


Q ss_pred             ChhhHHHHHHHHHHhhcCChhHHHHHH----------------hcccHHHHHHhcCC-------CCHHHHHHHHHHHHHh
Q 008827          220 HPRRFEGILLALADMCSKLECCRSRCL----------------SLQVLKLVVDALAH-------DSSDVRSAACMCLRSV  276 (552)
Q Consensus       220 ~~~~~~~a~~aL~~l~~~~~~~~~~~~----------------~~~~l~~lv~~L~~-------~~~~v~~~a~~~L~~l  276 (552)
                       .++...++...+-+|...-+..-...                -..++|.++.+|..       ++|.+..+|..||.-+
T Consensus       277 -d~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlf  355 (858)
T COG5215         277 -DEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLF  355 (858)
T ss_pred             -hHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHH
Confidence             56777777777666653211111111                12478999999963       4688999999999888


Q ss_pred             hcccccccchhhhccCcHHHHHHhh----cCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHH
Q 008827          277 SRSIKNLSAGSFMNETIVIPLVRLL----DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL  352 (552)
Q Consensus       277 s~~~~~~~~~~~~~~~~i~~Lv~lL----~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~  352 (552)
                      +....         ..++.+.+.+.    +++++.-++.|+.+++.+..+.......-+-..++|.+..++.++.-.++.
T Consensus       356 aq~~g---------d~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~  426 (858)
T COG5215         356 AQLKG---------DKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKS  426 (858)
T ss_pred             HHHhh---------hHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhh
Confidence            76532         23344555554    578899999999999999876654332333357889999888888888999


Q ss_pred             HHHHHHHHhcccCChHhHHHHHHhhcHHHHHh-hhc--CCChhHHHHHHHHHHHhhcCCcchHHH---HHh---hcCchH
Q 008827          353 NALRALRNLIFLAEDKCKEEIFMELTASLLAS-LIC--DPEPSVQEQALALVRNLVDGRINSVEY---IFA---EDGIIL  423 (552)
Q Consensus       353 ~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~-ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~---i~~---~~~~~~  423 (552)
                      .+.|+++.++.+..    ..+--++.++..++ .+.  .+.|.+..++.|..-|+.++-++....   .+.   ..  ++
T Consensus       427 ttAwc~g~iad~va----~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~a--i~  500 (858)
T COG5215         427 TTAWCFGAIADHVA----MIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLA--IL  500 (858)
T ss_pred             HHHHHHHHHHHHHH----HhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHH--HH
Confidence            99999999875321    11111222222221 111  245678889999999998764332211   000   00  22


Q ss_pred             HHHHHHhcc-cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHh-----------hcCC----ChhH
Q 008827          424 DAVGRQLRI-ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF-----------LQSN----DSRL  487 (552)
Q Consensus       424 ~~l~~~L~~-~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~l-----------L~~~----~~~~  487 (552)
                      ..|++.=+- .++...+..+..+|+-+..-+++....++.        |+.....+-           |...    ..++
T Consensus       501 ~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a--------~~~~~~~~kl~~~isv~~q~l~~eD~~~~~el  572 (858)
T COG5215         501 NALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILA--------GFYDYTSKKLDECISVLGQILATEDQLLVEEL  572 (858)
T ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHH--------HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            222211100 134556777777777776655544444432        333332222           2112    2346


Q ss_pred             HHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCc-cHHHHHHHHHHHHhhh
Q 008827          488 RTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCL-DVKLRVKTALEQFNSF  547 (552)
Q Consensus       488 ~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~-~v~~~a~~al~~~~~~  547 (552)
                      +.+-+..|..+.........+     .+......+.+++++..+ -+.+.+..|+..++.+
T Consensus       573 qSN~~~vl~aiir~~~~~ie~-----v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~s  628 (858)
T COG5215         573 QSNYIGVLEAIIRTRRRDIED-----VEDQLMELFIRILESTKPTTAFGDVYTAISALSTS  628 (858)
T ss_pred             HHHHHHHHHHHHHhcCCCccc-----HHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHH
Confidence            666666666665421111011     122235667777765433 3445667777666553

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=2.9e-06  Score=86.98  Aligned_cols=337  Identities=14%  Similarity=0.170  Sum_probs=237.6

Q ss_pred             ccchHHHHHhhc-CCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC---CHHHHHHHHHHHHHHhcCCh--
Q 008827           35 EENMEFLLSLLN-NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG---SLIQRDASLESIATIFKNNP--  108 (552)
Q Consensus        35 ~~~i~~l~~ll~-~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~---~~~v~~~al~~L~~l~~~~~--  108 (552)
                      ..+|+.|+.-.. +.-.+-|+.|+.-|...++  .+|.. +...|+++++..|+.   ++++-..+++++..+...++  
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~-Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~   97 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREE-VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP   97 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHH-HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence            467888887775 3446778888888877764  34443 345678899999985   45777889999999875442  


Q ss_pred             ----hh------hhhhcc--ccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhH-HhHHHHHHHhcCC
Q 008827          109 ----EV------VSQFVG--PDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK-TKLINNLLELLDD  175 (552)
Q Consensus       109 ----~~------~~~~~~--~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~-~g~i~~Lv~ll~~  175 (552)
                          +.      ...+++  ....+-+..++..+...|..||..|...+..+....+...++.+.. ..+|..|+.+|.+
T Consensus        98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence                10      111111  0135567788889999999999999999999988776656655544 5689999999997


Q ss_pred             C-CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCC-CC-hhhHHHHHHHHHHhhcCChhHHHHHHhcccHH
Q 008827          176 P-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS-LH-PRRFEGILLALADMCSKLECCRSRCLSLQVLK  252 (552)
Q Consensus       176 ~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~-~~-~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~  252 (552)
                      . ..+|.++.-.|..+..+++..++.++=.++...|.+++.... .+ .-+.+.|+..|.++-+++..++..+.+.+.+|
T Consensus       178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~  257 (970)
T KOG0946|consen  178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP  257 (970)
T ss_pred             hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence            6 467999999999999999999998888889999999887652 22 25789999999999999888888899999999


Q ss_pred             HHHHhcCC---CC-----HHHH-----HHHHHHHHHhhccc-----ccccchhhhccCcHHHHHHhhcCC--CHHHHHHH
Q 008827          253 LVVDALAH---DS-----SDVR-----SAACMCLRSVSRSI-----KNLSAGSFMNETIVIPLVRLLDDT--STAVQVAA  312 (552)
Q Consensus       253 ~lv~~L~~---~~-----~~v~-----~~a~~~L~~ls~~~-----~~~~~~~~~~~~~i~~Lv~lL~~~--~~~v~~~a  312 (552)
                      .+..+|..   ++     |.-+     ..+..+++.+....     ...++..+...+++..|..++-++  ..+++..+
T Consensus       258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes  337 (970)
T KOG0946|consen  258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES  337 (970)
T ss_pred             HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence            99988862   22     3222     23344555553221     111222256678888999988765  56899999


Q ss_pred             HHHHHHhhcCCchhHHHHHhh------C---cHHHHH-HhhcC-CCHHHHHHHHHHHHHhcccCChHhHHHHHH
Q 008827          313 LGAISNIVVDFTTRRSTFIRL------G---GVKLLV-QLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFM  375 (552)
Q Consensus       313 ~~aL~nl~~~~~~~~~~~~~~------g---~i~~L~-~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~  375 (552)
                      .-++++.+.++..+...+.+.      +   .+-.++ .+..+ -....|...+..+..+.+.. .+.+.+++.
T Consensus       338 iitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN-~~gq~~~l~  410 (970)
T KOG0946|consen  338 IITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN-DDGQRKFLK  410 (970)
T ss_pred             HHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc-hhhHHHHHH
Confidence            999999999887776665542      1   222222 22222 35678888888888776633 334444433

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=6.4e-07  Score=90.80  Aligned_cols=412  Identities=12%  Similarity=0.089  Sum_probs=232.9

Q ss_pred             HHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchh
Q 008827           80 KRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQD  158 (552)
Q Consensus        80 ~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~  158 (552)
                      +-++.+|.+ .+-+|..|...+..++-.+|+..        ...++.+.+-+.++||.|+.+|+..++.+++.+|.... 
T Consensus       147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl--------r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL-  217 (877)
T KOG1059|consen  147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL--------RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-  217 (877)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH--------hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-
Confidence            456778886 45789999999988887666653        34678899999999999999999999999998875433 


Q ss_pred             hhhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHh--
Q 008827          159 VGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADM--  234 (552)
Q Consensus       159 ~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l--  234 (552)
                           ..-|.+.++|.  .+.++-.......++|..-+|...     ...+++|.+++.+.. ...+...++.++-..  
T Consensus       218 -----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~-AmSLlYECvNTVVa~s~  286 (877)
T KOG1059|consen  218 -----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTV-AMSLLYECVNTVVAVSM  286 (877)
T ss_pred             -----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhH-HHHHHHHHHHHheeehh
Confidence                 36788899997  345677788888888887777653     345778888776652 223333344433322  


Q ss_pred             hcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHH
Q 008827          235 CSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALG  314 (552)
Q Consensus       235 ~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~  314 (552)
                      ....++.-..+  .-.+..|-.++.+.++.+++-++-+++.+...++..-+      ..-..+++.|.|.|+.+|..|..
T Consensus       287 s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq------a~kdlIlrcL~DkD~SIRlrALd  358 (877)
T KOG1059|consen  287 SSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ------AHKDLILRCLDDKDESIRLRALD  358 (877)
T ss_pred             ccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH------HhHHHHHHHhccCCchhHHHHHH
Confidence            11111111110  11355666677899999999999999999876543221      22357888999999999999999


Q ss_pred             HHHHhhcCCchhHHHHHhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCChHhHHHHHHh-hcHHHHHhhhcCCChh
Q 008827          315 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFME-LTASLLASLICDPEPS  392 (552)
Q Consensus       315 aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~-~~~~~l~~ll~~~~~~  392 (552)
                      .+-.++..  .+..     .++..|+..+.. +....|-..+.-+..+|..++   -+.+.+- =.+..++++.+-+-.+
T Consensus       359 Ll~gmVsk--kNl~-----eIVk~LM~~~~~ae~t~yrdell~~II~iCS~sn---Y~~ItdFEWYlsVlveLa~l~~~~  428 (877)
T KOG1059|consen  359 LLYGMVSK--KNLM-----EIVKTLMKHVEKAEGTNYRDELLTRIISICSQSN---YQYITDFEWYLSVLVELARLEGTR  428 (877)
T ss_pred             HHHHHhhh--hhHH-----HHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh---hhhhhhHHHHHHHHHHHHhccccc
Confidence            99877742  2211     245556654433 333566666655555655332   1111110 0123333333211110


Q ss_pred             HHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHH--Hh-----cccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhh
Q 008827          393 VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGR--QL-----RIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLL  465 (552)
Q Consensus       393 v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~--~L-----~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~  465 (552)
                      .=.....-+.+++-.-+......++    .+..++.  ++     .++.-.+|..+|+|++|-++..-+..         
T Consensus       429 ~G~~I~eQi~Dv~iRV~~iR~fsV~----~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~---------  495 (877)
T KOG1059|consen  429 HGSLIAEQIIDVAIRVPSIRPFSVS----QMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENP---------  495 (877)
T ss_pred             hhhHHHHHHHHHheechhhhHhHHH----HHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCH---------
Confidence            0011111112222211111111111    0111111  11     11124578889999999877532211         


Q ss_pred             HhhhhhhHHHHHHhhcC---C--ChhHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHH
Q 008827          466 LRAENKAQSCIIKFLQS---N--DSRLRTAAVWAVLNLTCSSS-PGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKT  539 (552)
Q Consensus       466 ~~~~~~~v~~Lv~lL~~---~--~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~  539 (552)
                          .+.+..+.+--.+   +  ..-...+.....++++.... ....+....+. .-++..|-++..+.+.+|||||..
T Consensus       496 ----~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~-~~i~~~l~qf~~s~d~EvQERA~~  570 (877)
T KOG1059|consen  496 ----NDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLV-NLILSFLEQFSGSSDLEVQERASE  570 (877)
T ss_pred             ----HHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHH-HHHHHHhhcccCccchhHHHHHHH
Confidence                2222222221111   1  11122344445555553211 12334445552 234566666777788999999999


Q ss_pred             HHHHHhhh
Q 008827          540 ALEQFNSF  547 (552)
Q Consensus       540 al~~~~~~  547 (552)
                      ++..+.-.
T Consensus       571 ~~~li~~i  578 (877)
T KOG1059|consen  571 VLELIRLI  578 (877)
T ss_pred             HHHHHHHH
Confidence            98776543

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=99.05  E-value=1.2e-06  Score=91.22  Aligned_cols=465  Identities=12%  Similarity=0.075  Sum_probs=239.8

Q ss_pred             CCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCc------
Q 008827            5 KSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGV------   78 (552)
Q Consensus         5 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~------   78 (552)
                      +++...+..++..+..+..+.......-.-....++++.-..++.+.+...|.-+...+++.-.....=...++      
T Consensus       489 Ssss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~  568 (1233)
T KOG1824|consen  489 SSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKT  568 (1233)
T ss_pred             cchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHH
Confidence            55667778888888887655422211112234556677777778888877776666666542110000000111      


Q ss_pred             -hHHHHHhhcC---CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHH-HHh-cCChhhHHHHHHHHHHHhhhC
Q 008827           79 -LKRLTSLLGG---SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE-IVK-DRFARTRLLASLCLIVIRNAS  152 (552)
Q Consensus        79 -i~~L~~lL~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~-ll~-~~~~~vr~~A~~~L~~l~~~~  152 (552)
                       .....+.|+.   +.+||+.|..|++.+...-.+..        +.-++..+. +++ =.+...|..|++++..++.+.
T Consensus       569 m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l--------~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~  640 (1233)
T KOG1824|consen  569 MYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFL--------GNELPRTLPILLERLGNEITRLTAVKALTLIAMSP  640 (1233)
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhh--------hhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhcc
Confidence             2223334443   45899999999998753322221        222333333 222 245778999999999988765


Q ss_pred             CCcchhhhhHHhHHHHHHHhcCCCC-chhchHHHHHHHhhcCCHHH-HHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHH
Q 008827          153 PCYLQDVGIKTKLINNLLELLDDPG-RVGDEASFAFSSLIAEKEDM-QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLA  230 (552)
Q Consensus       153 ~~~~~~~~~~~g~i~~Lv~ll~~~~-~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~a  230 (552)
                      -.- -..-+-..++|.+..++.... ..+.....++-.+....... ....++ ..+..+-.++..+  +-.+-+.++..
T Consensus       641 l~i-~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Lises--dlhvt~~a~~~  716 (1233)
T KOG1824|consen  641 LDI-DLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLISES--DLHVTQLAVAF  716 (1233)
T ss_pred             cee-ehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhhhHH--HHHHHHHHHHH
Confidence            321 112334568888888887433 34444444444444322110 000111 0111222222222  23445556666


Q ss_pred             HHHhhcCChhHHHHHHhcccHHHHHHhcCCCCH------------------------------------------HHH--
Q 008827          231 LADMCSKLECCRSRCLSLQVLKLVVDALAHDSS------------------------------------------DVR--  266 (552)
Q Consensus       231 L~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~------------------------------------------~v~--  266 (552)
                      +..+....+.. ..-....+++.++.+++++--                                          .+.  
T Consensus       717 L~tl~~~~ps~-l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kq  795 (1233)
T KOG1824|consen  717 LTTLAIIQPSS-LLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQ  795 (1233)
T ss_pred             HHHHHhcccHH-HHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHH
Confidence            66555433322 111223345555555443210                                          111  


Q ss_pred             --HHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHh
Q 008827          267 --SAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL  342 (552)
Q Consensus       267 --~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~l  342 (552)
                        ...+.|...++...++      ........|.+=+.  ..+..++..|.-.++.+-......-    ..+.-..+++-
T Consensus       796 a~~siA~cvA~Lt~~~~~------~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iiea  865 (1233)
T KOG1824|consen  796 AYYSIAKCVAALTCACPQ------KSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEA  865 (1233)
T ss_pred             HHHHHHHHHHHHHHhccc------cchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHH
Confidence              1122233333222111      01122333443333  3456777888888887765443221    12333467788


Q ss_pred             hcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhh---------cHHHHHhhhcCCChh----HHHHHHHHHHHhhcCCc
Q 008827          343 SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL---------TASLLASLICDPEPS----VQEQALALVRNLVDGRI  409 (552)
Q Consensus       343 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~---------~~~~l~~ll~~~~~~----v~~~a~~~L~~l~~~~~  409 (552)
                      +.+++++++.+|..||++++.+.-+..-..+.+..         .+-.+.+.+.+.+.+    ..+..-..|.+-|.+..
T Consensus       866 f~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~e  945 (1233)
T KOG1824|consen  866 FNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAE  945 (1233)
T ss_pred             cCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccch
Confidence            99999999999999999998865444333332211         111122222221111    11112222222233333


Q ss_pred             chHHHHHhh-cC--------chHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhh
Q 008827          410 NSVEYIFAE-DG--------IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL  480 (552)
Q Consensus       410 ~~~~~i~~~-~~--------~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL  480 (552)
                      +....++.| .|        .+++.|-..+.+ +.+..+..+..++.......+...+.++.        ..+.....++
T Consensus       946 egtR~vvAECLGkL~l~epesLlpkL~~~~~S-~a~~~rs~vvsavKfsisd~p~~id~~lk--------~~ig~fl~~~ 1016 (1233)
T KOG1824|consen  946 EGTRNVVAECLGKLVLIEPESLLPKLKLLLRS-EASNTRSSVVSAVKFSISDQPQPIDPLLK--------QQIGDFLKLL 1016 (1233)
T ss_pred             hhhHHHHHHHhhhHHhCChHHHHHHHHHHhcC-CCcchhhhhhheeeeeecCCCCccCHHHH--------HHHHHHHHHH
Confidence            333333222 11        156777666666 78888888888887766655544554543        3335667888


Q ss_pred             cCCChhHHHHHHHHHHhhcCC
Q 008827          481 QSNDSRLRTAAVWAVLNLTCS  501 (552)
Q Consensus       481 ~~~~~~~~~~a~~~l~~l~~~  501 (552)
                      +++|.+||..|..++...+.+
T Consensus      1017 ~dpDl~VrrvaLvv~nSaahN 1037 (1233)
T KOG1824|consen 1017 RDPDLEVRRVALVVLNSAAHN 1037 (1233)
T ss_pred             hCCchhHHHHHHHHHHHHHcc
Confidence            999999999999999999974

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=4.2e-06  Score=85.86  Aligned_cols=242  Identities=17%  Similarity=0.142  Sum_probs=150.8

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh-----HH-
Q 008827          255 VDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR-----RS-  328 (552)
Q Consensus       255 v~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~-----~~-  328 (552)
                      -.+|.+.++.|..+++.+.+.++-..        ....++++|+++|.+. .++|......+..++...+..     +. 
T Consensus       293 kpLl~S~n~sVVmA~aql~y~lAP~~--------~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsF  363 (968)
T KOG1060|consen  293 KPLLQSRNPSVVMAVAQLFYHLAPKN--------QVTKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSF  363 (968)
T ss_pred             cHHHhcCCcHHHHHHHhHHHhhCCHH--------HHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhce
Confidence            34556788899999999999998642        2346789999998754 455665555555554322111     00 


Q ss_pred             -------------------HHHhhC----cHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhh
Q 008827          329 -------------------TFIRLG----GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL  385 (552)
Q Consensus       329 -------------------~~~~~g----~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l  385 (552)
                                         .+.+.+    +++-+-.+.++.+..+...++.+++.++....      -+....++.|+.+
T Consensus       364 fv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~------sv~~tCL~gLv~L  437 (968)
T KOG1060|consen  364 FVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG------SVTDTCLNGLVQL  437 (968)
T ss_pred             EeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC------chhhHHHHHHHHH
Confidence                               112222    23333344566666677777788877764321      1223457789999


Q ss_pred             hcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhh
Q 008827          386 ICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLL  465 (552)
Q Consensus       386 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~  465 (552)
                      +.+.|..|...+...++.+...+|.....       ++..|.+++.+..-+.-+...+|.++-.+..    .-.|.    
T Consensus       438 lsshde~Vv~eaV~vIk~Llq~~p~~h~~-------ii~~La~lldti~vp~ARA~IiWLige~~e~----vpri~----  502 (968)
T KOG1060|consen  438 LSSHDELVVAEAVVVIKRLLQKDPAEHLE-------ILFQLARLLDTILVPAARAGIIWLIGEYCEI----VPRIA----  502 (968)
T ss_pred             HhcccchhHHHHHHHHHHHHhhChHHHHH-------HHHHHHHHhhhhhhhhhhceeeeeehhhhhh----cchhc----
Confidence            99999999999999999999887643222       4556667776644566677788888765542    11222    


Q ss_pred             HhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhh-cCCCccHHHHHHH
Q 008827          466 LRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMV-NDPCLDVKLRVKT  539 (552)
Q Consensus       466 ~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll-~~~~~~v~~~a~~  539 (552)
                          .+++..+.+-..+....+|.+.......+-..    ..++.+.+     .....++. .|.+-|+|+++..
T Consensus       503 ----PDVLR~laksFs~E~~evKlQILnL~aKLyl~----~~~~~kll-----~~Yv~~L~~yD~sYDiRDRaRF  564 (968)
T KOG1060|consen  503 ----PDVLRKLAKSFSDEGDEVKLQILNLSAKLYLT----NIDQTKLL-----VQYVFELARYDLSYDIRDRARF  564 (968)
T ss_pred             ----hHHHHHHHHhhccccchhhHHHHHhhhhheEe----chhhHHHH-----HHHHHHHhccCCCcchhHHHHH
Confidence                46667777777888888888887777666531    22222222     12223332 3677888888654

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=2.3e-06  Score=88.08  Aligned_cols=370  Identities=17%  Similarity=0.137  Sum_probs=212.0

Q ss_pred             HHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHH
Q 008827           90 LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNL  169 (552)
Q Consensus        90 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~L  169 (552)
                      .-+.-.|+.+|++++.  ++..+        +..|.+-+++++.++.+|..|+.|...+.+..++      ..+.+++..
T Consensus       121 q~vVglAL~alg~i~s--~Emar--------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~------l~e~f~~~~  184 (866)
T KOG1062|consen  121 QYVVGLALCALGNICS--PEMAR--------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD------LVEHFVIAF  184 (866)
T ss_pred             eeehHHHHHHhhccCC--HHHhH--------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch------HHHHhhHHH
Confidence            3566788999999874  34432        3457788899999999999999999999886554      234577778


Q ss_pred             HHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCC-------------CChhhHHHHHHHHHHhh
Q 008827          170 LELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS-------------LHPRRFEGILLALADMC  235 (552)
Q Consensus       170 v~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~-------------~~~~~~~~a~~aL~~l~  235 (552)
                      .++|.+ +.-|.......+..+...+++.-...-+  .++.|+..|++-.             .+|-++-.+++.|.-|.
T Consensus       185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG  262 (866)
T KOG1062|consen  185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG  262 (866)
T ss_pred             HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence            888874 4567777777777777766653332222  5667777665421             34567778888888887


Q ss_pred             cCChhHHHHHHh--------------cc---cHHHHHHhcC-CCCHHHHHHHHHHHHHhhcccc-cccchhh--------
Q 008827          236 SKLECCRSRCLS--------------LQ---VLKLVVDALA-HDSSDVRSAACMCLRSVSRSIK-NLSAGSF--------  288 (552)
Q Consensus       236 ~~~~~~~~~~~~--------------~~---~l~~lv~~L~-~~~~~v~~~a~~~L~~ls~~~~-~~~~~~~--------  288 (552)
                      .++++..+.+.+              .|   +.+.+...+. .++..+|..|+.+|+.+-.+.+ +++...+        
T Consensus       263 q~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~  342 (866)
T KOG1062|consen  263 QNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQ  342 (866)
T ss_pred             CCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhc
Confidence            766655443332              11   2222222232 3567778888888887744322 2221100        


Q ss_pred             hccCcH----HHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccc
Q 008827          289 MNETIV----IPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL  364 (552)
Q Consensus       289 ~~~~~i----~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  364 (552)
                      .+...+    ..++..|+|+|+.++..|...+.-++.. .+.+      ..++.|+.+|.+.+++.+...+.-+..++..
T Consensus       343 ~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~-~Nv~------~mv~eLl~fL~~~d~~~k~~~as~I~~laEk  415 (866)
T KOG1062|consen  343 QDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE-SNVR------VMVKELLEFLESSDEDFKADIASKIAELAEK  415 (866)
T ss_pred             CCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence            111111    2466777888888888888877766643 2222      4567888889888888988888888877765


Q ss_pred             CChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh-cCCcchHHHHHhhcCchHHHHH-HHhcccCchhHHHHH
Q 008827          365 AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV-DGRINSVEYIFAEDGIILDAVG-RQLRIASKAEIEIQG  442 (552)
Q Consensus       365 ~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~i~~~~~~~~~~l~-~~L~~~~~~~v~~~a  442 (552)
                      -.|+.+=      .++.+.+.+...-.-|...+...+-.+. .+.++.-.+.+..   .+..+. ..+....++.....+
T Consensus       416 faP~k~W------~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~r---Ly~a~~~~~~~~is~e~l~qVa  486 (866)
T KOG1062|consen  416 FAPDKRW------HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLR---LYLALSEDTLLDISQEPLLQVA  486 (866)
T ss_pred             cCCcchh------HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHH---HHHHHhhhhhhhhhhhhHHHHH
Confidence            4443221      1233333333222222222222221121 1111111111110   000000 001111455667889


Q ss_pred             HHHHHhhcC----CC-hhhHHHHHHHhhHhhhhhhHHHHHHhhcC--CChhHHHHHHHHHHhhcC
Q 008827          443 MYVLGNVAT----GK-ESHKEAVMDQLLLRAENKAQSCIIKFLQS--NDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       443 ~~~L~~la~----~~-~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~--~~~~~~~~a~~~l~~l~~  500 (552)
                      .|+|+-...    +. +..-..+-       +..++..|.+++.+  .+...+--|..++..|..
T Consensus       487 ~W~IGEYGdlll~~~~~~~p~~vt-------esdivd~l~~v~~~~~s~~~tk~yal~Al~KLSs  544 (866)
T KOG1062|consen  487 SWCIGEYGDLLLDGANEEEPIKVT-------ESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSS  544 (866)
T ss_pred             HHHhhhhhHHhhcCccccCCCcCC-------HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence            999997652    11 10000111       25666777777765  356788888888888874

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=6.6e-08  Score=91.23  Aligned_cols=188  Identities=15%  Similarity=0.086  Sum_probs=153.2

Q ss_pred             cCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHH
Q 008827          132 DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKL  210 (552)
Q Consensus       132 ~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  210 (552)
                      +.+++-+..|..-|..+...-++  ...+...|+++.++.+++ .+..+|..|+++++..++++|..+..+.+.|++++|
T Consensus        94 s~~le~ke~ald~Le~lve~iDn--Andl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDN--ANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhh--HHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            45667777787777777665432  345777788888888888 457899999999999999999999999999999999


Q ss_pred             HHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC--CCHHHHHHHHHHHHHhhcccccccchhh
Q 008827          211 YNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH--DSSDVRSAACMCLRSVSRSIKNLSAGSF  288 (552)
Q Consensus       211 ~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~--~~~~v~~~a~~~L~~ls~~~~~~~~~~~  288 (552)
                      +..|... .+...+..|+.|++++-++++.....+...+++..|...+++  .+..++..++..+..+.......+.. +
T Consensus       172 l~~ls~~-~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~-~  249 (342)
T KOG2160|consen  172 LKILSSD-DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI-A  249 (342)
T ss_pred             HHHHccC-CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH-H
Confidence            9999865 456678999999999999999998999999999999999998  56788899999999997764443333 5


Q ss_pred             hccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 008827          289 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF  323 (552)
Q Consensus       289 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~  323 (552)
                      ...++...+..+....+.++.+.+..++..+....
T Consensus       250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~  284 (342)
T KOG2160|consen  250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLSEL  284 (342)
T ss_pred             HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence            55677777777777888899999998887766543

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=2.7e-06  Score=87.59  Aligned_cols=401  Identities=14%  Similarity=0.163  Sum_probs=226.6

Q ss_pred             HHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccC
Q 008827           41 LLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDT  119 (552)
Q Consensus        41 l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~  119 (552)
                      +..=|++++.-++..|..+|.++|...-.|+      ..|-+.+++++ ++-+|.+|+.|...+-.-.|+...       
T Consensus       112 lknDL~s~nq~vVglAL~alg~i~s~Emard------lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e-------  178 (866)
T KOG1062|consen  112 LKNDLNSSNQYVVGLALCALGNICSPEMARD------LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE-------  178 (866)
T ss_pred             HHhhccCCCeeehHHHHHHhhccCCHHHhHH------hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH-------
Confidence            3334455666778888888888885333344      23556667776 678999999999888766666542       


Q ss_pred             CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC---------C-------CCchhchH
Q 008827          120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD---------D-------PGRVGDEA  183 (552)
Q Consensus       120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~---------~-------~~~v~~~a  183 (552)
                       ..++...+++.+.+.-|-..++..+..++..+++ ..+.+  ...++-|+..|+         +       +|-+|...
T Consensus       179 -~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-~l~~f--r~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i  254 (866)
T KOG1062|consen  179 -HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD-ALSYF--RDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI  254 (866)
T ss_pred             -HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-HHHHH--HHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence             3345556677777777777777777777775442 12222  125555655553         0       01235556


Q ss_pred             HHHHHHhhcCCHHHHHHHHH--------------------hCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHH
Q 008827          184 SFAFSSLIAEKEDMQKLAFE--------------------VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRS  243 (552)
Q Consensus       184 ~~~L~~l~~~~~~~~~~~~~--------------------~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~  243 (552)
                      ...|.-+..++++....+.+                    -.++..++.+ .   .++.+|+.|+.+|+.+..+.+.+-+
T Consensus       255 LrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I-~---~~~~LrvlainiLgkFL~n~d~Nir  330 (866)
T KOG1062|consen  255 LRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI-R---SNSGLRVLAINILGKFLLNRDNNIR  330 (866)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc-c---CCchHHHHHHHHHHHHhcCCcccee
Confidence            66665555554443222211                    0123333332 1   2355788888888877665443321


Q ss_pred             HH--------Hh--c----ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHH
Q 008827          244 RC--------LS--L----QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQ  309 (552)
Q Consensus       244 ~~--------~~--~----~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~  309 (552)
                      .+        +.  .    .==..++++|++++..+|+.|...+..|... .+.+       ..+..|+.+|...+++.+
T Consensus       331 YvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~-~Nv~-------~mv~eLl~fL~~~d~~~k  402 (866)
T KOG1062|consen  331 YVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE-SNVR-------VMVKELLEFLESSDEDFK  402 (866)
T ss_pred             eeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHH-------HHHHHHHHHHHhccHHHH
Confidence            11        11  1    1234578999999999999999999999876 4544       346789999988899999


Q ss_pred             HHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHH----HHHhhcHHHHHhh
Q 008827          310 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEE----IFMELTASLLASL  385 (552)
Q Consensus       310 ~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~----i~~~~~~~~l~~l  385 (552)
                      ...+.-+..++..+.+.+.+.++     .+.+.+...-.-++......+..+..+..++....    +........   +
T Consensus       403 ~~~as~I~~laEkfaP~k~W~id-----tml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~---~  474 (866)
T KOG1062|consen  403 ADIASKIAELAEKFAPDKRWHID-----TMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDT---L  474 (866)
T ss_pred             HHHHHHHHHHHHhcCCcchhHHH-----HHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhh---h
Confidence            99999999999888776655442     33333333221222222222222222111111111    111111111   2


Q ss_pred             hcCCChhHHHHHHHHHHHhhc----CCcc-hHHHHHhhcCchHHHHHHHhccc-CchhHHHHHHHHHHhhcCCChhhHHH
Q 008827          386 ICDPEPSVQEQALALVRNLVD----GRIN-SVEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKESHKEA  459 (552)
Q Consensus       386 l~~~~~~v~~~a~~~L~~l~~----~~~~-~~~~i~~~~~~~~~~l~~~L~~~-~~~~v~~~a~~~L~~la~~~~~~~~~  459 (552)
                      +.-+.+.+...+.|+++....    +..+ .-..+-++.  ++..+...+.++ .+..++..++.++..+++........
T Consensus       475 ~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesd--ivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~r  552 (866)
T KOG1062|consen  475 LDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESD--IVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSSER  552 (866)
T ss_pred             hhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccHHH
Confidence            223445567788899886541    1000 000111111  566666666553 45778999999999998855432211


Q ss_pred             HHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHH
Q 008827          460 VMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAV  492 (552)
Q Consensus       460 i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~  492 (552)
                      +            -..+..+..+-|.++|..|.
T Consensus       553 i------------~~lI~~~~~s~~~elQQRa~  573 (866)
T KOG1062|consen  553 I------------KQLISSYKSSLDTELQQRAV  573 (866)
T ss_pred             H------------HHHHHHhcccccHHHHHHHH
Confidence            1            12334455566666666654

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=4.1e-07  Score=93.47  Aligned_cols=406  Identities=18%  Similarity=0.213  Sum_probs=242.9

Q ss_pred             HHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccc
Q 008827           39 EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGP  117 (552)
Q Consensus        39 ~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~  117 (552)
                      +.++......+-......-..+.+.+.......    .+++..++.=..+ ++.+|..|+++++.+-.+  ...      
T Consensus        52 ~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~------  119 (734)
T KOG1061|consen   52 PDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KIT------  119 (734)
T ss_pred             HHHHhhcccCCchHHHHHHHHHHHhhccCchHH----HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHH------
Confidence            334444444444444555555555544332211    1222222222222 456777666666654321  111      


Q ss_pred             cCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHH
Q 008827          118 DTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKED  196 (552)
Q Consensus       118 ~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~  196 (552)
                        +-...++.+.++++++.+|..|+-+...+...+.    +.+...|.++.|..++. +++.|-..|..+|..+...++.
T Consensus       120 --ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~----~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~  193 (734)
T KOG1061|consen  120 --EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP----DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS  193 (734)
T ss_pred             --HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh----hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence              2356778899999999999999999999887543    44667899999999998 4567888888888888765543


Q ss_pred             HHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008827          197 MQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV  276 (552)
Q Consensus       197 ~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~l  276 (552)
                      ....-.....+..++..+...+ +.. +-..+.++..-..+++  +.   ....+..+...|.+.++.+...+.+.+..+
T Consensus       194 ~~~~~l~~~~~~~lL~al~ec~-EW~-qi~IL~~l~~y~p~d~--~e---a~~i~~r~~p~Lqh~n~avvlsavKv~l~~  266 (734)
T KOG1061|consen  194 VNLLELNPQLINKLLEALNECT-EWG-QIFILDCLAEYVPKDS--RE---AEDICERLTPRLQHANSAVVLSAVKVILQL  266 (734)
T ss_pred             CCcccccHHHHHHHHHHHHHhh-hhh-HHHHHHHHHhcCCCCc--hh---HHHHHHHhhhhhccCCcceEeehHHHHHHH
Confidence            1111111122334444443331 121 2233344443332222  11   113577888899999999999999999998


Q ss_pred             hcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH-H------------HHHhh----------
Q 008827          277 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR-S------------TFIRL----------  333 (552)
Q Consensus       277 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~-~------------~~~~~----------  333 (552)
                      .....+...  .....+.++++.++..+. +++..|..-+.-+....+..- .            ..++.          
T Consensus       267 ~~~~~~~~~--~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la  343 (734)
T KOG1061|consen  267 VKYLKQVNE--LLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELA  343 (734)
T ss_pred             HHHHHHHHH--HHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHh
Confidence            776555322  355677889999998776 888888877765554333211 0            00111          


Q ss_pred             ---C---cHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827          334 ---G---GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  407 (552)
Q Consensus       334 ---g---~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  407 (552)
                         +   .+.-+.++...-+.+.-..+++++++++...+.    .   .+.++.+++++......+...+...++++...
T Consensus       344 ~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~----~---~~cv~~lLell~~~~~yvvqE~~vvi~dilRk  416 (734)
T KOG1061|consen  344 NDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ----S---NDCVSILLELLETKVDYVVQEAIVVIRDILRK  416 (734)
T ss_pred             hHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh----h---hhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence               1   222233333344677788899999998763321    1   45688889999876667777777788888877


Q ss_pred             CcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhH
Q 008827          408 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL  487 (552)
Q Consensus       408 ~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~  487 (552)
                      .|...+.+..       .+...+.+-.+|+.+.+-.|+++..+..-++ ..            .++..+++-..+....+
T Consensus       417 yP~~~~~vv~-------~l~~~~~sl~epeak~amiWilg~y~~~i~~-a~------------elL~~f~en~~dE~~~V  476 (734)
T KOG1061|consen  417 YPNKYESVVA-------ILCENLDSLQEPEAKAALIWILGEYAERIEN-AL------------ELLESFLENFKDETAEV  476 (734)
T ss_pred             CCCchhhhhh-------hhcccccccCChHHHHHHHHHHhhhhhccCc-HH------------HHHHHHHhhcccchHHH
Confidence            6655444433       3333344446789999999999987764332 11            12233445555666777


Q ss_pred             HHHHHHHHHhhc
Q 008827          488 RTAAVWAVLNLT  499 (552)
Q Consensus       488 ~~~a~~~l~~l~  499 (552)
                      +..-..+...+-
T Consensus       477 ql~LLta~ik~F  488 (734)
T KOG1061|consen  477 QLELLTAAIKLF  488 (734)
T ss_pred             HHHHHHHHHHHH
Confidence            777666666644

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.92  E-value=4.3e-06  Score=82.82  Aligned_cols=479  Identities=15%  Similarity=0.134  Sum_probs=255.4

Q ss_pred             CcHHHHHHHHHHHHHHHcCCCCCCcccc-cccchH---HHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHH
Q 008827            6 SYMEVVDAGARSLKMIYQSKMAPKYDFL-QEENME---FLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKR   81 (552)
Q Consensus         6 ~~~~~~~~~l~~l~~l~~~~~~~~~~~~-~~~~i~---~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~   81 (552)
                      +++---+.|.+.|.+++..-..+  +.+ +..+-.   .+..++++.++..+.++..++.++++..+...     -+...
T Consensus        33 ~Spvs~r~~r~lls~l~yll~tg--e~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvl-----m~tss  105 (898)
T COG5240          33 KSPVSTRSARKLLSNLFYLLSTG--ELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVL-----MGTSS  105 (898)
T ss_pred             cCCCChHHHHHHHHHHHHHHhcc--ccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhh-----HHHHH
Confidence            33444566777777764332222  333 333333   35566678899999999999998886443211     12334


Q ss_pred             HHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHH-HHHhcCChhhHHHHHHHHHHHhhhCCCcchh
Q 008827           82 LTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCII-EIVKDRFARTRLLASLCLIVIRNASPCYLQD  158 (552)
Q Consensus        82 L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~-~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~  158 (552)
                      +..=+.+  ...++-.|++.|..+...+...  .+         ..++ ...=+..+.++.+|+..-+.+.-.+..  + 
T Consensus       106 iMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~--~~---------er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~--~-  171 (898)
T COG5240         106 IMKDLNGGVPDDVKPMAIRSLFSVIDGETVY--DF---------ERYLNQAFVSTSMARRSAALVVAYHLLPNNFN--Q-  171 (898)
T ss_pred             HHHhhccCCccccccHHHHHHHHhcCcchhh--hH---------HHHhhhhccccchhhhhhHHHHhhhhccccHH--H-
Confidence            4444443  3478888999988865432111  11         1111 122356666777766655555433211  0 


Q ss_pred             hhhH-HhHHHHHHHhcC----------CC--Cc-hhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhH
Q 008827          159 VGIK-TKLINNLLELLD----------DP--GR-VGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRF  224 (552)
Q Consensus       159 ~~~~-~g~i~~Lv~ll~----------~~--~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~  224 (552)
                      .-++ ...-+....+-+          ++  .. .+..|.+.|.++-..+.         -+.-++++.+..+. ...-+
T Consensus       172 ~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dk---------ma~lklv~hf~~n~-smknq  241 (898)
T COG5240         172 TKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDK---------MAQLKLVEHFRGNA-SMKNQ  241 (898)
T ss_pred             HHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccH---------HHHHHHHHHhhccc-ccccc
Confidence            0001 011111111211          11  11 25666666665543321         12346666666542 11111


Q ss_pred             H---HHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh
Q 008827          225 E---GILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL  301 (552)
Q Consensus       225 ~---~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL  301 (552)
                      .   -.+++...+...++..+.     +..|.|-..+++.-..|...++.++..++..  +.... ++ ...+..|-.+|
T Consensus       242 ~a~V~lvr~~~~ll~~n~q~~~-----q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~--nv~~~-~~-~~~vs~L~~fL  312 (898)
T COG5240         242 LAGVLLVRATVELLKENSQALL-----QLRPFLNSWLSDKFEMVFLEAARAVCALSEE--NVGSQ-FV-DQTVSSLRTFL  312 (898)
T ss_pred             hhheehHHHHHHHHHhChHHHH-----HHHHHHHHHhcCcchhhhHHHHHHHHHHHHh--ccCHH-HH-HHHHHHHHHHH
Confidence            1   123444444444444333     3578888888888899999999999888764  22222 22 24566677778


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHH
Q 008827          302 DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASL  381 (552)
Q Consensus       302 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~  381 (552)
                      .++....|..|.+.|..++...+.   .+.  -+=+.+-.+..+.|..+...|+.+|-.-   ...+.-.+     .+..
T Consensus       313 ~s~rv~~rFsA~Riln~lam~~P~---kv~--vcN~evEsLIsd~Nr~IstyAITtLLKT---Gt~e~idr-----Lv~~  379 (898)
T COG5240         313 KSTRVVLRFSAMRILNQLAMKYPQ---KVS--VCNKEVESLISDENRTISTYAITTLLKT---GTEETIDR-----LVNL  379 (898)
T ss_pred             hcchHHHHHHHHHHHHHHHhhCCc---eee--ecChhHHHHhhcccccchHHHHHHHHHc---CchhhHHH-----HHHH
Confidence            889999999999999999876553   111  1123444566677766666666655433   22222222     2344


Q ss_pred             HHhhhcCCChhHHHHHHHHHHHhhcCCcchH--------HHHHhhcCc-----hHHHHHHHhcccCchhHHHHHHHHHHh
Q 008827          382 LASLICDPEPSVQEQALALVRNLVDGRINSV--------EYIFAEDGI-----ILDAVGRQLRIASKAEIEIQGMYVLGN  448 (552)
Q Consensus       382 l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--------~~i~~~~~~-----~~~~l~~~L~~~~~~~v~~~a~~~L~~  448 (552)
                      +..++.+-+...+.-++.+++.++..-|...        ..+.++||.     +++.+.+.+.  ..|+-++.++..|+.
T Consensus       380 I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~--~~p~skEraLe~LC~  457 (898)
T COG5240         380 IPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME--NDPDSKERALEVLCT  457 (898)
T ss_pred             HHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh--hCchHHHHHHHHHHH
Confidence            5555555555555555666666664433211        122333432     3444444443  234445555555544


Q ss_pred             hcCCChhhHHH--HHHHhhHh------hhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHH
Q 008827          449 VATGKESHKEA--VMDQLLLR------AENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVS  520 (552)
Q Consensus       449 la~~~~~~~~~--i~~~~~~~------~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~  520 (552)
                      +...++.+.-.  |+. ++..      ....++.++..-+--.|..+|.+|+.+|+.++.+.++....+       .+.-
T Consensus       458 fIEDcey~~I~vrIL~-iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~-------sv~~  529 (898)
T COG5240         458 FIEDCEYHQITVRILG-ILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQ-------SVEN  529 (898)
T ss_pred             HHhhcchhHHHHHHHH-HhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHH-------HHHH
Confidence            44433321110  110 0000      001123333333333577899999999999998654333222       2345


Q ss_pred             HHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          521 HVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       521 ~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      .|.+.++|.+.+||++|..+++++...
T Consensus       530 ~lkRclnD~DdeVRdrAsf~l~~~~~~  556 (898)
T COG5240         530 ALKRCLNDQDDEVRDRASFLLRNMRLS  556 (898)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence            677889999999999999999988643

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.2e-07  Score=89.39  Aligned_cols=189  Identities=19%  Similarity=0.206  Sum_probs=151.8

Q ss_pred             hhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCc
Q 008827          214 LQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETI  293 (552)
Q Consensus       214 L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~  293 (552)
                      +..+..+++-++.|+.-|..++. +-++...+...|++..++.++++++..+|..|+++|+..+++.+..... +.+.|+
T Consensus        90 ~~~~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~-v~E~~~  167 (342)
T KOG2160|consen   90 LNSSSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQ-VIELGA  167 (342)
T ss_pred             cCcccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHH-HHHccc
Confidence            34344567788999999998885 3456677889999999999999999999999999999999987776666 889999


Q ss_pred             HHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhcccCChHhH
Q 008827          294 VIPLVRLLDD-TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKCK  370 (552)
Q Consensus       294 i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~  370 (552)
                      .+.|+..+.. ++..++..|..|++.+..++.+....+...++...|...+++  .+...+..++..+..+..... ..+
T Consensus       168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~  246 (342)
T KOG2160|consen  168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDE  246 (342)
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhh
Confidence            9999999974 456788999999999999999999899999999999999998  567788889999999876432 233


Q ss_pred             HHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827          371 EEIFMELTASLLASLICDPEPSVQEQALALVRNLV  405 (552)
Q Consensus       371 ~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~  405 (552)
                      ..+-..+....+..+..+.+.++.+.++.++..+.
T Consensus       247 d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  247 DIASSLGFQRVLENLISSLDFEVNEAALTALLSLL  281 (342)
T ss_pred             hHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence            33334444555566667778888888887766654

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.90  E-value=1.2e-06  Score=92.62  Aligned_cols=394  Identities=16%  Similarity=0.119  Sum_probs=232.4

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHH
Q 008827          124 SCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAF  202 (552)
Q Consensus       124 ~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~  202 (552)
                      +..-++.++..+.+|..++.-+++++..-.    ......+.+|.+.++..++ ..||..|...+.++...-..-  .-.
T Consensus       240 ~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~----~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~--~d~  313 (759)
T KOG0211|consen  240 PIVQSLCQDDTPMVRRAVASNLGNIAKVLE----SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD--DDV  313 (759)
T ss_pred             HHHHhhccccchhhHHHHHhhhHHHHHHHH----HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc--hhh
Confidence            344568899999999999999999988643    3566788999999999854 567877776666554311100  011


Q ss_pred             HhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccccc
Q 008827          203 EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN  282 (552)
Q Consensus       203 ~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~  282 (552)
                      .....+.+++...+.+  ..++.........+..   ..-.........+....++++..++++.+...-...++.....
T Consensus       314 ~~~~~~~l~~~~~d~~--~~v~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~  388 (759)
T KOG0211|consen  314 VKSLTESLVQAVEDGS--WRVSYMVADKFSELSS---AVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNA  388 (759)
T ss_pred             hhhhhHHHHHHhcChh--HHHHHHHhhhhhhHHH---HhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCc
Confidence            2234566666555442  5555555555444442   1111222335688899999999999999998877777655332


Q ss_pred             ccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827          283 LSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI  362 (552)
Q Consensus       283 ~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  362 (552)
                      .+...+....++|.+-.+..+.+..++.+.+..+.++..-.+..  . .-....|.++..+++..+.++.+..+.+..+-
T Consensus       389 ~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~--~-ti~~llp~~~~~l~de~~~V~lnli~~ls~~~  465 (759)
T KOG0211|consen  389 SCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE--R-TISELLPLLIGNLKDEDPIVRLNLIDKLSLLE  465 (759)
T ss_pred             ccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC--c-CccccChhhhhhcchhhHHHHHhhHHHHHHHH
Confidence            22222556677888888888999999999888888775443311  1 11346677888889999999999998776553


Q ss_pred             ccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHH
Q 008827          363 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG  442 (552)
Q Consensus       363 ~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a  442 (552)
                      ... ............++.+..+-.+..+.++...++.+.-++...-   ..++.+.  .-+.+...+.+ ...+++.+|
T Consensus       466 ~v~-~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~--~~~l~~~~l~d-~v~~Ir~~a  538 (759)
T KOG0211|consen  466 EVN-DVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEK--LAELLRTWLPD-HVYSIREAA  538 (759)
T ss_pred             hcc-CcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHH--HHHHHHhhhhh-hHHHHHHHH
Confidence            211 1223333444456666666666667777766666655543211   0111110  11111111221 223444444


Q ss_pred             HHHHHhhcC--CChhhHHHHHHHhhH---------------------------hhhhhhHHHHHHhhcCCChhHHHHHHH
Q 008827          443 MYVLGNVAT--GKESHKEAVMDQLLL---------------------------RAENKAQSCIIKFLQSNDSRLRTAAVW  493 (552)
Q Consensus       443 ~~~L~~la~--~~~~~~~~i~~~~~~---------------------------~~~~~~v~~Lv~lL~~~~~~~~~~a~~  493 (552)
                      +..+..++.  |.++.+..++...+.                           -....++|.+..+..++.++||.+++.
T Consensus       539 a~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak  618 (759)
T KOG0211|consen  539 ARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAK  618 (759)
T ss_pred             HHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHH
Confidence            444433332  211222111110000                           001345566667777777777777777


Q ss_pred             HHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHh
Q 008827          494 AVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN  545 (552)
Q Consensus       494 ~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~  545 (552)
                      .+-.+..    .   -....++..+.+.+..+.+|++.++|-+|..|++.+.
T Consensus       619 ~L~~i~~----~---L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~  663 (759)
T KOG0211|consen  619 HLPKILK----L---LDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIE  663 (759)
T ss_pred             HHHHHHh----h---cchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence            7777763    1   1223445555666677777777788888777777654

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=3.5e-06  Score=84.91  Aligned_cols=368  Identities=14%  Similarity=0.110  Sum_probs=233.4

Q ss_pred             HHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHH
Q 008827           90 LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNL  169 (552)
Q Consensus        90 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~L  169 (552)
                      +.+|.+.+.--+.++++-.......     ...+..++.-++.+...+|...+.||..+.......     ....+.+.+
T Consensus        70 ~~~~~~~~v~~~~~a~~~~~~d~~~-----~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~-----~~~~~l~~l  139 (569)
T KOG1242|consen   70 DNLRNNVVVLEGTLAFHLQIVDPRP-----ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL-----SGEYVLELL  139 (569)
T ss_pred             HHHhhhhHHHHHHHHHhccccCcch-----hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc-----CHHHHHHHH
Confidence            4667666666666665432221111     223444566677888999999999998877644322     224577888


Q ss_pred             HHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhc
Q 008827          170 LELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL  248 (552)
Q Consensus       170 v~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~  248 (552)
                      .++++. .-.-+..++..++.+..+..-  ....+.+.+..+-+.+.+.. ....++.+..+....+.+--    ...+.
T Consensus       140 ~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l~~ai~dk~-~~~~re~~~~a~~~~~~~Lg----~~~EP  212 (569)
T KOG1242|consen  140 LELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNLSKAIIDKK-SALNREAALLAFEAAQGNLG----PPFEP  212 (569)
T ss_pred             HHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHHHHHhcccc-hhhcHHHHHHHHHHHHHhcC----CCCCc
Confidence            888873 234577888888888766543  23345566677777666552 34445444433333322110    01122


Q ss_pred             ---ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch
Q 008827          249 ---QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT  325 (552)
Q Consensus       249 ---~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~  325 (552)
                         ..+|.++.-..+....||.+|..+...+-+..+..     .-..++|+++.-+.+..+....+++..++.++... +
T Consensus       213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~-----aVK~llpsll~~l~~~kWrtK~aslellg~m~~~a-p  286 (569)
T KOG1242|consen  213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY-----AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA-P  286 (569)
T ss_pred             hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-----hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-h
Confidence               24666666667888999999999988886654322     22355677776666568888999999999887543 3


Q ss_pred             hHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827          326 RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV  405 (552)
Q Consensus       326 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~  405 (552)
                      ..-...-..++|.+.+.|.+..+++|..+..++..++.-.++  .+ |  ...++.|++.+.+++.++.+..-.+...-+
T Consensus       287 ~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN--~d-I--~~~ip~Lld~l~dp~~~~~e~~~~L~~ttF  361 (569)
T KOG1242|consen  287 KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN--PD-I--QKIIPTLLDALADPSCYTPECLDSLGATTF  361 (569)
T ss_pred             HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc--HH-H--HHHHHHHHHHhcCcccchHHHHHhhcceee
Confidence            333455578999999999999999999999999998764332  11 1  125677888888777554433222211111


Q ss_pred             cCCcchHHHHHhh-cCchHHHHHHHhcccCchhHHHHHHHHHHhhcCC--ChhhHHHHHHHhhHhhhhhhHHHHHHhhcC
Q 008827          406 DGRINSVEYIFAE-DGIILDAVGRQLRIASKAEIEIQGMYVLGNVATG--KESHKEAVMDQLLLRAENKAQSCIIKFLQS  482 (552)
Q Consensus       406 ~~~~~~~~~i~~~-~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~--~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~  482 (552)
                            +.++-.. ...+++.+.+-+.. .+.++++.++.++.|++.-  ++.....++.        .++|-+-..+.+
T Consensus       362 ------V~~V~~psLalmvpiL~R~l~e-Rst~~kr~t~~IidNm~~LveDp~~lapfl~--------~Llp~lk~~~~d  426 (569)
T KOG1242|consen  362 ------VAEVDAPSLALMVPILKRGLAE-RSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP--------SLLPGLKENLDD  426 (569)
T ss_pred             ------eeeecchhHHHHHHHHHHHHhh-ccchhhhhHHHHHHHHHHhhcCHHHHhhhHH--------HHhhHHHHHhcC
Confidence                  0011000 01156777777766 7788899999999999973  3433444442        455667777788


Q ss_pred             CChhHHHHHHHHHHhhcC
Q 008827          483 NDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       483 ~~~~~~~~a~~~l~~l~~  500 (552)
                      ..+++|..++.+|+.+..
T Consensus       427 ~~PEvR~vaarAL~~l~e  444 (569)
T KOG1242|consen  427 AVPEVRAVAARALGALLE  444 (569)
T ss_pred             CChhHHHHHHHHHHHHHH
Confidence            899999999999987774

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.88  E-value=2.6e-06  Score=88.98  Aligned_cols=488  Identities=15%  Similarity=0.135  Sum_probs=263.4

Q ss_pred             cHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChh-hH------HHHHhcCch
Q 008827            7 YMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSL-EQ------KLLFDAGVL   79 (552)
Q Consensus         7 ~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~-~~------~~l~~~g~i   79 (552)
                      +=++.++|++|+..+-.+..---.++++ ..=|.+++-++..+++|+.....+...+-+... ..      +... .|+.
T Consensus       345 SWkVRRaAaKcl~a~IsSR~E~L~~~~q-~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e-~~g~  422 (1233)
T KOG1824|consen  345 SWKVRRAAAKCLEAVISSRLEMLPDFYQ-TLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAME-QGGT  422 (1233)
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhh-ccCC
Confidence            3478999999999886554211123333 344677777777777777666555544322111 00      1111 1333


Q ss_pred             H-----------HHHHhhc----C-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHh--cCChhhHHHH
Q 008827           80 K-----------RLTSLLG----G-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVK--DRFARTRLLA  141 (552)
Q Consensus        80 ~-----------~L~~lL~----~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~vr~~A  141 (552)
                      +           .+++.+.    . +.+-+..++..|..+..-.++....    .-...++.+...+.  +.....+..+
T Consensus       423 ~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~----~~~slvpgI~~~l~DkSsss~~ki~~  498 (1233)
T KOG1824|consen  423 PSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQ----HIPSLVPGIIYSLNDKSSSSNLKIDA  498 (1233)
T ss_pred             ccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhh----cccccchhhhhhcCCccchHHHHHHH
Confidence            3           3333332    2 2233444555555544333222111    11445677777665  4566888889


Q ss_pred             HHHHHHHhhhCCCcchhhhhHHhHHHHHHHh----cCCC-CchhchHHHHHHHhhcC------------CHHHHHHHHHh
Q 008827          142 SLCLIVIRNASPCYLQDVGIKTKLINNLLEL----LDDP-GRVGDEASFAFSSLIAE------------KEDMQKLAFEV  204 (552)
Q Consensus       142 ~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~l----l~~~-~~v~~~a~~~L~~l~~~------------~~~~~~~~~~~  204 (552)
                      ..++.......+.+..     +..++.|...    ..++ ..+-.+|..+...+...            +++. .     
T Consensus       499 L~fl~~~L~s~~p~~f-----hp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v-~-----  567 (1233)
T KOG1824|consen  499 LVFLYSALISHPPEVF-----HPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYV-K-----  567 (1233)
T ss_pred             HHHHHHHHhcCChhhc-----ccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhH-H-----
Confidence            9998886654432211     2233333333    3332 34555555554444321            1111 1     


Q ss_pred             CcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC-ChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc
Q 008827          205 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSK-LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL  283 (552)
Q Consensus       205 ~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~  283 (552)
                      ..+...++.|...+.+.++++.|..+.+.+... .+..+...  ...+|.+.+-|  ++...|..|.+++..++.+.-.+
T Consensus       568 ~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i  643 (1233)
T KOG1824|consen  568 TMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERL--GNEITRLTAVKALTLIAMSPLDI  643 (1233)
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHH--hchhHHHHHHHHHHHHHhcccee
Confidence            112344555666666788999999888876531 11111100  12445555544  45677889999999887764333


Q ss_pred             cchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008827          284 SAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF  363 (552)
Q Consensus       284 ~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  363 (552)
                      .-. -.-..+++.+.++++......+.....++-.++..+......-.-.-++..+..++..++-.+-..|+..|..++.
T Consensus       644 ~l~-~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~  722 (1233)
T KOG1824|consen  644 DLS-PVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAI  722 (1233)
T ss_pred             ehh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            211 2345678888888887767777777777777765443322222222344555566777778888889999988876


Q ss_pred             cCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh----cCCcchHHHHHhhcCchHHHHHHHhcccCc----
Q 008827          364 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV----DGRINSVEYIFAEDGIILDAVGRQLRIASK----  435 (552)
Q Consensus       364 ~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~----~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~----  435 (552)
                      ..+  ..........++.++.+++++-  +|..++..+-++.    .+++....         +..+...+.. |.    
T Consensus       723 ~~p--s~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~l~---------y~~l~s~lt~-PV~~~~  788 (1233)
T KOG1824|consen  723 IQP--SSLLKISNPILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPDLD---------YISLLSLLTA-PVYEQV  788 (1233)
T ss_pred             ccc--HHHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCCcc---------HHHHHHHHcC-Cccccc
Confidence            433  3334445567888999998754  5655555554443    22221111         2233344443 21    


Q ss_pred             -hhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC--ChhHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 008827          436 -AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLNLTCSSSPGSSGRLVK  512 (552)
Q Consensus       436 -~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~  512 (552)
                       ..+..++.+.+..+++        .+...++++.......+++=++++  +...|.-|...++.+....+...      
T Consensus       789 ~~~l~kqa~~siA~cvA--------~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~------  854 (1233)
T KOG1824|consen  789 TDGLHKQAYYSIAKCVA--------ALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP------  854 (1233)
T ss_pred             ccchhHHHHHHHHHHHH--------HHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc------
Confidence             1245566665555443        111111222233334555444433  44567777777777775322111      


Q ss_pred             HHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhh
Q 008827          513 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  546 (552)
Q Consensus       513 l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~  546 (552)
                        ..+.-..+.+-.+++++||+.+|..||+.+.-
T Consensus       855 --~~e~~~~iieaf~sp~edvksAAs~ALGsl~v  886 (1233)
T KOG1824|consen  855 --QNELKDTIIEAFNSPSEDVKSAASYALGSLAV  886 (1233)
T ss_pred             --chhhHHHHHHHcCCChHHHHHHHHHHhhhhhc
Confidence              11223355666678888999998888887764

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.87  E-value=2.7e-06  Score=84.80  Aligned_cols=335  Identities=16%  Similarity=0.151  Sum_probs=197.4

Q ss_pred             cHHHHHHHHhcCChhhHHHHHHHHHHHhhhCC-CcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHH
Q 008827          122 TLSCIIEIVKDRFARTRLLASLCLIVIRNASP-CYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQK  199 (552)
Q Consensus       122 ~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~-~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~  199 (552)
                      .++.++.++++..|.+|..|+.....++..-. ++..+...  .+--.|.+.+. +++++.-....++..+.+....-.-
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~--klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELA--KLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHH--HHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence            45667789999999999999998888765332 11112222  22234566666 4566655555544443321100000


Q ss_pred             HHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH---HHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008827          200 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC---RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV  276 (552)
Q Consensus       200 ~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~---~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~l  276 (552)
                      .-=..|.+|.|..+|++.  +.++..+....++-+|...+++   |.-+   .+--.|++.|++-+.++|.+|...++.+
T Consensus       683 qpPi~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG~I  757 (975)
T COG5181         683 QPPISGILPSLTPILRNK--HQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFGCI  757 (975)
T ss_pred             CCchhhccccccHhhhhh--hHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence            000246788888888875  4778888888888888766653   1111   1233467888889999999999999988


Q ss_pred             hcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHH
Q 008827          277 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR  356 (552)
Q Consensus       277 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~  356 (552)
                      ++.        +.-+.++..|+.=|+..+...|.-..-+++-.+..+.+       -.++|.|+.=-..++..++...+.
T Consensus       758 s~a--------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLk  822 (975)
T COG5181         758 SRA--------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLK  822 (975)
T ss_pred             Hhh--------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHH
Confidence            876        23344555555555544433333333444333322222       135666666666677888888999


Q ss_pred             HHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc--hHHHHHhhcCchHHHHHHHhcccC
Q 008827          357 ALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN--SVEYIFAEDGIILDAVGRQLRIAS  434 (552)
Q Consensus       357 aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~i~~~~~~~~~~l~~~L~~~~  434 (552)
                      +++.+........++.+.  ...|.|-..|.+.|+--+.-+...++++..+.+.  ..+..++    +++++..-+-. +
T Consensus       823 am~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH----LlNllwpNIle-~  895 (975)
T COG5181         823 AMCFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH----LLNLLWPNILE-P  895 (975)
T ss_pred             HHHHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH----HHHHhhhhccC-C
Confidence            998886543322333332  3567777888999999999999999999877542  2233333    34444432222 5


Q ss_pred             chhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          435 KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       435 ~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      .|.++....-.+-.++.        ++.      ...+...+.+=|-++...||+ +.|...|...
T Consensus       896 sPhvi~~~~Eg~e~~~~--------~lg------~g~~m~Yv~qGLFHPs~~VRk-~ywtvyn~my  946 (975)
T COG5181         896 SPHVIQSFDEGMESFAT--------VLG------SGAMMKYVQQGLFHPSSTVRK-RYWTVYNIMY  946 (975)
T ss_pred             CcHHHHHHHHHHHHHHH--------Hhc------cHHHHHHHHHhccCchHHHHH-HHHHHHhhhh
Confidence            56655544333333221        111      011223445556677777775 4677777664

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.85  E-value=1.6e-06  Score=86.32  Aligned_cols=377  Identities=14%  Similarity=0.111  Sum_probs=207.3

Q ss_pred             cHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-Cch--hchHHHHHHHhhcCCHHHH
Q 008827          122 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRV--GDEASFAFSSLIAEKEDMQ  198 (552)
Q Consensus       122 ~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v--~~~a~~~L~~l~~~~~~~~  198 (552)
                      .+..++.-.+|+...-|..++.........-+....+....+..+..+...+++. ..+  -..+..+..    .+.+.+
T Consensus       522 v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~----vsl~~r  597 (975)
T COG5181         522 VSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVL----VSLEFR  597 (975)
T ss_pred             HHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEeccccee----eehhhc
Confidence            3455666677777777776666655544332222233444455666666666532 221  111111000    000000


Q ss_pred             HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH--HHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008827          199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC--RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV  276 (552)
Q Consensus       199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~--~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~l  276 (552)
                      -.-+-.-.+..++..|++.+  |.+|+.|+...+.++.--..+  -+.+...|  ..|.+.|....+++.-...+++..+
T Consensus       598 ~kp~l~~ivStiL~~L~~k~--p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I  673 (975)
T COG5181         598 GKPHLSMIVSTILKLLRSKP--PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSI  673 (975)
T ss_pred             cCcchHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHH
Confidence            00011123456667777654  789999988888776311111  12233333  2466778888899888888888777


Q ss_pred             hcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch---hHHHHHhhCcHHHHHHhhcCCCHHHHHH
Q 008827          277 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT---RRSTFIRLGGVKLLVQLSKSMDSTIRLN  353 (552)
Q Consensus       277 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~---~~~~~~~~g~i~~L~~ll~~~~~~v~~~  353 (552)
                      .....--.-+ ---.|++|.|.-+|++.+..++.+....++.++...+.   .++++.   +-=.|+.+|++.+.++|.+
T Consensus       674 ~sv~~~~~mq-pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~  749 (975)
T COG5181         674 YSVHRFRSMQ-PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRN  749 (975)
T ss_pred             hhhhcccccC-CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHh
Confidence            5442211101 12358999999999999999999999888888875544   233332   2234677888899999999


Q ss_pred             HHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccc
Q 008827          354 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA  433 (552)
Q Consensus       354 a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~  433 (552)
                      |..+++.++....|.        .++..|+.-|+..+...+....-+++-.+..+-     .|+    +++.+..=... 
T Consensus       750 A~~tfG~Is~aiGPq--------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-----pfs----VlP~lm~dY~T-  811 (975)
T COG5181         750 ATETFGCISRAIGPQ--------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-----PFS----VLPTLMSDYET-  811 (975)
T ss_pred             hhhhhhhHHhhcCHH--------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-----chh----hHHHHHhcccC-
Confidence            999999887654431        122223332322222222111111111111110     011    44554443344 


Q ss_pred             CchhHHHHHHHHHHhhcC--CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHH
Q 008827          434 SKAEIEIQGMYVLGNVAT--GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLV  511 (552)
Q Consensus       434 ~~~~v~~~a~~~L~~la~--~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  511 (552)
                      |+..||...+.+++.+-.  |.. .++-+         ..+.|.|-..|.+.|+..|..|...|..++.+ +.|+-.-  
T Consensus       812 Pe~nVQnGvLkam~fmFeyig~~-s~dYv---------y~itPlleDAltDrD~vhRqta~nvI~Hl~Ln-c~gtg~e--  878 (975)
T COG5181         812 PEANVQNGVLKAMCFMFEYIGQA-SLDYV---------YSITPLLEDALTDRDPVHRQTAMNVIRHLVLN-CPGTGDE--  878 (975)
T ss_pred             chhHHHHhHHHHHHHHHHHHHHH-HHHHH---------HHhhHHHHhhhcccchHHHHHHHHHHHHHhcC-CCCcccH--
Confidence            677788888888887654  111 12222         34457778888899999999999999999876 3343111  


Q ss_pred             HHHHCCcHHHHHhhhc----CCCccHHHHHHHHHHHHhh
Q 008827          512 KLHDAGIVSHVKNMVN----DPCLDVKLRVKTALEQFNS  546 (552)
Q Consensus       512 ~l~~~g~~~~L~~ll~----~~~~~v~~~a~~al~~~~~  546 (552)
                           .+.-.|..++.    +++|.+..+....++.|+.
T Consensus       879 -----da~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~  912 (975)
T COG5181         879 -----DAAIHLLNLLWPNILEPSPHVIQSFDEGMESFAT  912 (975)
T ss_pred             -----HHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHH
Confidence                 11113333332    5667776666666655543

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.84  E-value=3.1e-06  Score=89.68  Aligned_cols=378  Identities=17%  Similarity=0.131  Sum_probs=218.1

Q ss_pred             CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHH
Q 008827           89 SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINN  168 (552)
Q Consensus        89 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~  168 (552)
                      ++.+|..+..-++.++..-+.   ..   .....++.+..+.+|+...||++|...+..+.......   .-......+.
T Consensus       250 ~~~Vr~~~a~~l~~~a~~~~~---~~---~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~---~d~~~~~~~~  320 (759)
T KOG0211|consen  250 TPMVRRAVASNLGNIAKVLES---EI---VKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD---DDVVKSLTES  320 (759)
T ss_pred             chhhHHHHHhhhHHHHHHHHH---HH---HHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc---hhhhhhhhHH
Confidence            345666666666665533211   11   12456777788999999999999999999988765331   1344668888


Q ss_pred             HHHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhc-CChhHHHHHH
Q 008827          169 LLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCS-KLECCRSRCL  246 (552)
Q Consensus       169 Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~-~~~~~~~~~~  246 (552)
                      +++..++. ..++...+.....+...-.   .......-+++....+....  ...+..+..-...++. .+...+..+.
T Consensus       321 l~~~~~d~~~~v~~~~~~~~~~L~~~~~---~~~~~~~~~~~~~~l~~~~~--~e~r~a~a~~~~~l~~~l~~~~~~~i~  395 (759)
T KOG0211|consen  321 LVQAVEDGSWRVSYMVADKFSELSSAVG---PSATRTQLVPPVSNLLKDEE--WEVRYAIAKKVQKLACYLNASCYPNIP  395 (759)
T ss_pred             HHHHhcChhHHHHHHHhhhhhhHHHHhc---cccCcccchhhHHHHhcchh--hhhhHHhhcchHHHhhhcCcccccccc
Confidence            88888754 3455444444333321100   00001122455555555542  3444444444444433 2223344555


Q ss_pred             hcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh
Q 008827          247 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR  326 (552)
Q Consensus       247 ~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~  326 (552)
                      ....+|.+-.+..+.+..++.+.+..+..++-..+..+    .-....|.+...+++.+++++....+.+..+-...+..
T Consensus       396 ~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~----ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~  471 (759)
T KOG0211|consen  396 DSSILPEVQVLVLDNALHVRSALASVITGLSPILPKER----TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVI  471 (759)
T ss_pred             hhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCc----CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcc
Confidence            66678999999999999999999888877754433211    12355677888999999999999998777665544444


Q ss_pred             HHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhc
Q 008827          327 RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD  406 (552)
Q Consensus       327 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  406 (552)
                      .........++.+.++.....-.+|...++.+-.++....    ..++....-+.+..-+.+...++++.|...+.-++.
T Consensus       472 g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~----~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~  547 (759)
T KOG0211|consen  472 GISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG----VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVE  547 (759)
T ss_pred             cchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh----hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHH
Confidence            4455666778888888877777788888877776655322    111211111111112223334455555444444432


Q ss_pred             CCc--ch--------------------------HHHHHhhcCc------hHHHHHHHhcccCchhHHHHHHHHHHhhcCC
Q 008827          407 GRI--NS--------------------------VEYIFAEDGI------ILDAVGRQLRIASKAEIEIQGMYVLGNVATG  452 (552)
Q Consensus       407 ~~~--~~--------------------------~~~i~~~~~~------~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~  452 (552)
                      ...  -.                          +..+.+-.|.      +++.+..+..+ +.++|+-+++..|..+...
T Consensus       548 ~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D-~vanVR~nvak~L~~i~~~  626 (759)
T KOG0211|consen  548 TFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKD-PVANVRINVAKHLPKILKL  626 (759)
T ss_pred             HhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccC-CchhhhhhHHHHHHHHHhh
Confidence            100  00                          0000111110      34444444344 7778888888888776542


Q ss_pred             ChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          453 KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       453 ~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                      -.   ....       +..+.|.+..+.++.+.++|..|.-+...+.
T Consensus       627 L~---~~~~-------~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~  663 (759)
T KOG0211|consen  627 LD---ESVR-------DEEVLPLLETLSSDQELDVRYRAILAFGSIE  663 (759)
T ss_pred             cc---hHHH-------HHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence            21   1122       2556678888888888899988877766554

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=2.4e-05  Score=80.48  Aligned_cols=334  Identities=13%  Similarity=0.142  Sum_probs=233.0

Q ss_pred             ccHHHHHHHH-hcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-C--CCchhchHHHHHHHhhcCCH-
Q 008827          121 RTLSCIIEIV-KDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-D--PGRVGDEASFAFSSLIAEKE-  195 (552)
Q Consensus       121 ~~l~~l~~ll-~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~--~~~v~~~a~~~L~~l~~~~~-  195 (552)
                      .+++.++.-. .+.-++-|..|++.|..+++.    ++ ..+.+.++++|+..|+ +  ++++...+..++.++.++++ 
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk----YR-~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK----YR-EEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH----HH-HHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            3455554432 345567799999999999884    23 3455678999999998 3  45677788888888876552 


Q ss_pred             -----HH----------HHHHH-HhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC-ChhHHHHHHhc-ccHHHHHHh
Q 008827          196 -----DM----------QKLAF-EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK-LECCRSRCLSL-QVLKLVVDA  257 (552)
Q Consensus       196 -----~~----------~~~~~-~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~-~~l~~lv~~  257 (552)
                           +.          ...++ ..+-|..++..+..-  +..+|..++..|.++... ..+.++.+... -++..++.+
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~--DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl  174 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF--DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL  174 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh--chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence                 11          11222 245677777777654  477899999999888664 45667666554 589999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCC----CHHHHHHHHHHHHHhhcCCchhHHHHHhh
Q 008827          258 LAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT----STAVQVAALGAISNIVVDFTTRRSTFIRL  333 (552)
Q Consensus       258 L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~~~~~~~  333 (552)
                      |.+....+|-.+...|..+++..+.+..- +.-.++...|+.+++.+    .--|...|...+-||..++..+...+.+.
T Consensus       175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKl-VAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~  253 (970)
T KOG0946|consen  175 LRDSREPIRNEAILLLSELVKDNSSIQKL-VAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG  253 (970)
T ss_pred             HhhhhhhhchhHHHHHHHHHccCchHHHH-HHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc
Confidence            99999999999999999999987776654 55678899999999743    23678899999999999888899999999


Q ss_pred             CcHHHHHHhhcC---CCH------HHH----HHHHHHHHHhcccCCh-----HhHHHHHHhhcHHHHHhhhcCC--ChhH
Q 008827          334 GGVKLLVQLSKS---MDS------TIR----LNALRALRNLIFLAED-----KCKEEIFMELTASLLASLICDP--EPSV  393 (552)
Q Consensus       334 g~i~~L~~ll~~---~~~------~v~----~~a~~aL~~l~~~~~~-----~~~~~i~~~~~~~~l~~ll~~~--~~~v  393 (552)
                      +-+|.|.++|.-   .+.      .-|    ..++.++..+..-..+     .+.+.+...+++..|..++.++  ..+|
T Consensus       254 ~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dI  333 (970)
T KOG0946|consen  254 SYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADI  333 (970)
T ss_pred             ccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhH
Confidence            999999988764   221      111    1245555555442221     2345666778899999998876  4579


Q ss_pred             HHHHHHHHHHhhcCCcchHHHHHhhc----C----chHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHH
Q 008827          394 QEQALALVRNLVDGRINSVEYIFAED----G----IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMD  462 (552)
Q Consensus       394 ~~~a~~~L~~l~~~~~~~~~~i~~~~----~----~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~  462 (552)
                      +..++-++.+...++.........-.    .    .++=++..+..+...+..|.++++++..+...+.+....++.
T Consensus       334 ltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~  410 (970)
T KOG0946|consen  334 LTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLK  410 (970)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHH
Confidence            99999999999988654333322211    0    123334444444345678888888888887766655444544

>TIGR02270 conserved hypothetical protein

Probab=98.83  E-value=2.1e-06  Score=85.75  Aligned_cols=244  Identities=18%  Similarity=0.095  Sum_probs=167.2

Q ss_pred             CcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc
Q 008827          205 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS  284 (552)
Q Consensus       205 ~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~  284 (552)
                      .+++.++..|... .++.++..+..++...  +++.         .+..++..|.+.++.++..+..+|..+        
T Consensus        54 ~a~~~L~~aL~~d-~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i--------  113 (410)
T TIGR02270        54 AATELLVSALAEA-DEPGRVACAALALLAQ--EDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWL--------  113 (410)
T ss_pred             hHHHHHHHHHhhC-CChhHHHHHHHHHhcc--CChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcC--------
Confidence            4577788877544 2455656555554432  2221         378889999999999999999988543        


Q ss_pred             chhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccc
Q 008827          285 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL  364 (552)
Q Consensus       285 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  364 (552)
                          ......+.|..+|+++++.++..++.+++..-            ....+.+..+++++++.+|..|+.+|+.+...
T Consensus       114 ----~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~  177 (410)
T TIGR02270       114 ----GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPRR  177 (410)
T ss_pred             ----CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc
Confidence                33466788999999999999998888886522            23456788889999999999999999988542


Q ss_pred             CChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHH
Q 008827          365 AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMY  444 (552)
Q Consensus       365 ~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~  444 (552)
                                  ...+.|...+.+.++.|+..|++.+..+-.  ++           ..+.+...... +..........
T Consensus       178 ------------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~-----------A~~~l~~~~~~-~g~~~~~~l~~  231 (410)
T TIGR02270       178 ------------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL-----------AWGVCRRFQVL-EGGPHRQRLLV  231 (410)
T ss_pred             ------------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh-----------HHHHHHHHHhc-cCccHHHHHHH
Confidence                        145567777899999999999999877632  22           23333332322 22223333333


Q ss_pred             HHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHh
Q 008827          445 VLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKN  524 (552)
Q Consensus       445 ~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~  524 (552)
                      ++...  +.                ..+++.|..++++++  ++..++++++.+..               -..++.|++
T Consensus       232 ~lal~--~~----------------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~---------------p~av~~L~~  276 (410)
T TIGR02270       232 LLAVA--GG----------------PDAQAWLRELLQAAA--TRREALRAVGLVGD---------------VEAAPWCLE  276 (410)
T ss_pred             HHHhC--Cc----------------hhHHHHHHHHhcChh--hHHHHHHHHHHcCC---------------cchHHHHHH
Confidence            33322  22                233467788888754  89999999998873               235888999


Q ss_pred             hhcCCCccHHHHHHHHHHHHhhh
Q 008827          525 MVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       525 ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      .+.|  +.+++.|.+|+..|.-.
T Consensus       277 ~l~d--~~~aR~A~eA~~~ItG~  297 (410)
T TIGR02270       277 AMRE--PPWARLAGEAFSLITGM  297 (410)
T ss_pred             HhcC--cHHHHHHHHHHHHhhCC
Confidence            8874  34899999999988753

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.82  E-value=3.9e-06  Score=80.48  Aligned_cols=308  Identities=15%  Similarity=0.109  Sum_probs=191.6

Q ss_pred             HHHHHHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHHHhCc-HHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHH
Q 008827          166 INNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNG-VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRS  243 (552)
Q Consensus       166 i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~  243 (552)
                      -+..++++.+. +-+.....++++.++......-.. .+-.. ...|-..+.++ ..++....+.++|..+... +++|-
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~-~e~~~~~~~l~~~l~~~-~~~~~~~~~~rcLQ~ll~~-~eyR~  192 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMEL-SELDVYKGFLKEQLQSS-TNNDYIQFAARCLQTLLRV-DEYRY  192 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHhcC-cchhh
Confidence            45667777744 444555888888888654331100 00000 12333444443 3466778888999988864 57899


Q ss_pred             HHHhcccHHHHHHhcC--CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC-CCHHHHHHHHHHHHHhh
Q 008827          244 RCLSLQVLKLVVDALA--HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-TSTAVQVAALGAISNIV  320 (552)
Q Consensus       244 ~~~~~~~l~~lv~~L~--~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~  320 (552)
                      .++...++..++..+.  ..+-.+++..+-|++-|+.+ +..... +...+.++.|..++++ ..+.|-.-++.++.|+.
T Consensus       193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~-~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll  270 (442)
T KOG2759|consen  193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEK-LKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLL  270 (442)
T ss_pred             eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999888899888883  45779999999999999988 444444 5667899999999985 56778888999999998


Q ss_pred             cCCc------hhHHHHHhhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChh
Q 008827          321 VDFT------TRRSTFIRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPS  392 (552)
Q Consensus       321 ~~~~------~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~  392 (552)
                      ...+      .....++..++.+.+-.+.+.  +|+++....-..-..|.. +  ......+++-.-+.....|..+.+.
T Consensus       271 ~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~-s--vq~LsSFDeY~sEl~sG~L~WSP~H  347 (442)
T KOG2759|consen  271 DKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKN-S--VQDLSSFDEYKSELRSGRLEWSPVH  347 (442)
T ss_pred             ccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-H--HHhhccHHHHHHHHHhCCcCCCccc
Confidence            7553      222345555555555545443  455554432221111210 0  0000011111111112222221111


Q ss_pred             HHHHHHHHHHHhhcCCcchHHHHHhhcC-chHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhh
Q 008827          393 VQEQALALVRNLVDGRINSVEYIFAEDG-IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENK  471 (552)
Q Consensus       393 v~~~a~~~L~~l~~~~~~~~~~i~~~~~-~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~  471 (552)
                      .-+. .|         .+++ .-+++.. .++..|..+|+.+.+|.+..-||+-|+.+....|..+. ++++      -|
T Consensus       348 k~e~-FW---------~eNa-~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k------~g  409 (442)
T KOG2759|consen  348 KSEK-FW---------RENA-DRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEK------YG  409 (442)
T ss_pred             cccc-hH---------HHhH-HHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHH------hc
Confidence            1000 00         0011 1111111 17888999999978899999999999999987775554 5553      78


Q ss_pred             hHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          472 AQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       472 ~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                      +-..++++|.++|++||.+|..|+..+.
T Consensus       410 gKe~vM~Llnh~d~~Vry~ALlavQ~lm  437 (442)
T KOG2759|consen  410 GKERVMNLLNHEDPEVRYHALLAVQKLM  437 (442)
T ss_pred             hHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            8899999999999999999999998876

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.82  E-value=3.8e-06  Score=83.11  Aligned_cols=354  Identities=14%  Similarity=0.126  Sum_probs=219.9

Q ss_pred             CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHH
Q 008827          120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK  199 (552)
Q Consensus       120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~  199 (552)
                      .+.+++++..+.+.+..+|..|...++|+++.......  .....+...|.++..+.+.--..++..+-.+..+-..-+.
T Consensus        83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~--~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~  160 (675)
T KOG0212|consen   83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVL--VYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESA  160 (675)
T ss_pred             HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcc--cchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccc
Confidence            45678899999999999999999999999986543211  2334567777777765443334556666555432111111


Q ss_pred             HHH-HhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHH-hcccHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 008827          200 LAF-EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVDALAHDSSDVRSAACMCLRSVS  277 (552)
Q Consensus       200 ~~~-~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls  277 (552)
                      ..+ -.+.+|.|-+.+...  .|..|...+.-|..+-. .++. +.+. -..+++-+..+|.++++++|..+-.++.++-
T Consensus       161 ~tFsL~~~ipLL~eriy~~--n~~tR~flv~Wl~~Lds-~P~~-~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL  236 (675)
T KOG0212|consen  161 STFSLPEFIPLLRERIYVI--NPMTRQFLVSWLYVLDS-VPDL-EMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL  236 (675)
T ss_pred             cccCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhc-CCcH-HHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            011 122234444444433  36677777776666643 2222 2221 1246778889999999999987777666663


Q ss_pred             cccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCH-HHHHHHHH
Q 008827          278 RSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS-TIRLNALR  356 (552)
Q Consensus       278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~  356 (552)
                      ....+.... +--...++.++.-+.+++++++..|..-+..++.-++..- ...-.|++..++..+.+..+ .++..+..
T Consensus       237 ~eI~s~P~s-~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a~~  314 (675)
T KOG0212|consen  237 AEIRSSPSS-MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYAQM  314 (675)
T ss_pred             HHHhcCccc-cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHHHH
Confidence            221111111 2335778999999999999999999888887776544322 22235667777777776655 35554433


Q ss_pred             H---HHHhcccCChHhHHHHHHh-hcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc
Q 008827          357 A---LRNLIFLAEDKCKEEIFME-LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI  432 (552)
Q Consensus       357 a---L~~l~~~~~~~~~~~i~~~-~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~  432 (552)
                      .   +..++.  ++..+++ ++- ..++.+.+.+.++..+.+-.++.-+..+-...|.   .++.....+++.|...|.+
T Consensus       315 ~n~~l~~l~s--~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~---ql~~h~~~if~tLL~tLsd  388 (675)
T KOG0212|consen  315 VNGLLLKLVS--SERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG---QLLVHNDSIFLTLLKTLSD  388 (675)
T ss_pred             HHHHHHHHHh--hhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc---hhhhhccHHHHHHHHhhcC
Confidence            2   222222  2222222 332 3578888889999999999999888888765543   2233322378888888887


Q ss_pred             cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          433 ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       433 ~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                       ++++|...++..+.+++....+ .. .         ..++..|..+......-++..+...+..+|
T Consensus       389 -~sd~vvl~~L~lla~i~~s~~~-~~-~---------~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC  443 (675)
T KOG0212|consen  389 -RSDEVVLLALSLLASICSSSNS-PN-L---------RKFLLSLLEMFKEDTKLLEVRGNLIIRQLC  443 (675)
T ss_pred             -chhHHHHHHHHHHHHHhcCccc-cc-H---------HHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence             8899999999999999975442 11 0         123344555555555566777777777776

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.78  E-value=1.6e-05  Score=81.20  Aligned_cols=405  Identities=14%  Similarity=0.086  Sum_probs=228.1

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCC----CCcchHHHHHHHHhhcCChhhHHHHHhcCch
Q 008827            4 LKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNE----SENVSGLGASIISHSCKTSLEQKLLFDAGVL   79 (552)
Q Consensus         4 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~----~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i   79 (552)
                      +++|....+..|+.+.-.+...... ..++..+.+|.++.-++..    +...-.....+-..+|         .+.|.-
T Consensus       646 ~sPDeemkkivLKVv~qcc~t~Gv~-~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia---------~KvG~~  715 (1172)
T KOG0213|consen  646 GSPDEEMKKIVLKVVKQCCATDGVE-PAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIA---------AKVGSD  715 (1172)
T ss_pred             CCChHHHHHHHHHHHHHHhcccCCC-HHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHH---------HHhCch
Confidence            5788999999999999998777666 6777788999998888631    1111111222222222         223443


Q ss_pred             HH---HHHhhcC-CHHHHHHHHHHHHHHhcCCh--hhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCC
Q 008827           80 KR---LTSLLGG-SLIQRDASLESIATIFKNNP--EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASP  153 (552)
Q Consensus        80 ~~---L~~lL~~-~~~v~~~al~~L~~l~~~~~--~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~  153 (552)
                      +.   ++.=+++ ++..|.....+...+...-.  +...++    ....+..++..+++.+.... ....++...+..-.
T Consensus       716 ~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderl----eE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg  790 (1172)
T KOG0213|consen  716 PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERL----EERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALG  790 (1172)
T ss_pred             HHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHH----HHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHh
Confidence            33   3333444 44556656666555432110  010011    12345556655554444333 22233333332211


Q ss_pred             CcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHH--HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHH
Q 008827          154 CYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQ--KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLA  230 (552)
Q Consensus       154 ~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~a  230 (552)
                      ...+  -.-..++..++..|+ .++.+|..|+..++.++.--..+.  +.+...|  -.|.+.|...  +|++.-..+.+
T Consensus       791 ~r~k--pylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgee--ypEvLgsILgA  864 (1172)
T KOG0213|consen  791 GRVK--PYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEE--YPEVLGSILGA  864 (1172)
T ss_pred             hccc--cchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcc--cHHHHHHHHHH
Confidence            1111  111335555666666 457899999999988874211110  1111122  2345555554  47777776666


Q ss_pred             HHHhhcCChhHHHHH-HhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHH---HHHHhhcCCCH
Q 008827          231 LADMCSKLECCRSRC-LSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVI---PLVRLLDDTST  306 (552)
Q Consensus       231 L~~l~~~~~~~~~~~-~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~---~Lv~lL~~~~~  306 (552)
                      +..++..-. .-+.. --.+++|.|...|++....|+.++...++.++...+..    +-....+.   -|+.+|...+.
T Consensus       865 ikaI~nvig-m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~----v~aREWMRIcfeLlelLkahkK  939 (1172)
T KOG0213|consen  865 IKAIVNVIG-MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEY----VSAREWMRICFELLELLKAHKK  939 (1172)
T ss_pred             HHHHHHhcc-ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCccc----CCHHHHHHHHHHHHHHHHHHHH
Confidence            666653210 00000 02368999999999999999999999999998764431    11122333   36666777889


Q ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhh
Q 008827          307 AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI  386 (552)
Q Consensus       307 ~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll  386 (552)
                      ++|.+|..+++.++..-.+       ..++..|+.-|+..+...|....-+++-.+....|        -.++|.|..=-
T Consensus       940 ~iRRaa~nTfG~IakaIGP-------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p--------FtVLPalmneY 1004 (1172)
T KOG0213|consen  940 EIRRAAVNTFGYIAKAIGP-------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP--------FTVLPALMNEY 1004 (1172)
T ss_pred             HHHHHHHhhhhHHHHhcCH-------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc--------hhhhHHHHhhc
Confidence            9999999999988753322       34455555555544333333322222222221111        11344444444


Q ss_pred             cCCChhHHHHHHHHHHHhhcCC-cchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCCh
Q 008827          387 CDPEPSVQEQALALVRNLVDGR-INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE  454 (552)
Q Consensus       387 ~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~  454 (552)
                      +.++..||.-.+.++..++.-- ....+|+..    +.++|..-|.. .+..-+.-++.++..++-|.+
T Consensus      1005 rtPe~nVQnGVLkalsf~FeyigemskdYiya----v~PlleDAlmD-rD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1005 RTPEANVQNGVLKALSFMFEYIGEMSKDYIYA----VTPLLEDALMD-RDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred             cCchhHHHHhHHHHHHHHHHHHHHHhhhHHHH----hhHHHHHhhcc-ccHHHHHHHHHHHHHHhcCCC
Confidence            5788899999999998887431 112334444    56777777776 788888889999998887644

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.77  E-value=4.6e-07  Score=88.83  Aligned_cols=267  Identities=17%  Similarity=0.228  Sum_probs=186.0

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCC
Q 008827          225 EGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT  304 (552)
Q Consensus       225 ~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~  304 (552)
                      .+++..|.++++.-.-.|..+.+..+.+.++++|++++..+...+...+.|+.-..++++.. |.+.|++..|+.++.+.
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~-fL~~~iIdvl~~~v~sK  485 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAG-FLEKSIIDVLVNLVMSK  485 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHH-HHHhhHHHHHHHHhhcc
Confidence            44556677777655556777788889999999999999999999999999998888888888 99999999999999988


Q ss_pred             CHHHHHHHHHHHHHhhcCCchh-HHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCCh--HhHHHHHHh----h
Q 008827          305 STAVQVAALGAISNIVVDFTTR-RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED--KCKEEIFME----L  377 (552)
Q Consensus       305 ~~~v~~~a~~aL~nl~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~--~~~~~i~~~----~  377 (552)
                      |..+|....|.+..++.++... +-.++...++..++++..+++-.++...+..|.|++++...  +.++..+..    .
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y  565 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY  565 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence            8899999999999999876544 23466678999999999999999999999999999884432  122211111    2


Q ss_pred             cHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhc--------------------------
Q 008827          378 TASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLR--------------------------  431 (552)
Q Consensus       378 ~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~--------------------------  431 (552)
                      ....+.+.+...+|-..++.+..|.+++..+...-+.+.+... ++..+...|.                          
T Consensus       566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~-~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v  644 (743)
T COG5369         566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQED-MLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV  644 (743)
T ss_pred             HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHH-HHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence            3455666666666655555566776666554332222222211 1111111110                          


Q ss_pred             --------------------------ccCchhHHHHHHHHHHhhcCCC---h-----hhHHHHHHHhhHhhhhhhHHHHH
Q 008827          432 --------------------------IASKAEIEIQGMYVLGNVATGK---E-----SHKEAVMDQLLLRAENKAQSCII  477 (552)
Q Consensus       432 --------------------------~~~~~~v~~~a~~~L~~la~~~---~-----~~~~~i~~~~~~~~~~~~v~~Lv  477 (552)
                                                ..++++.-.+..|.+.|+....   +     ..|..++.      ..|+-..++
T Consensus       645 ~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~------~~G~~e~l~  718 (743)
T COG5369         645 NLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILC------ANGIREWLV  718 (743)
T ss_pred             cccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHH------HccHHHHHH
Confidence                                      1245567777888888866421   1     02333332      367777777


Q ss_pred             HhhcCCChhHHHHHHHHHHhhc
Q 008827          478 KFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       478 ~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                      ++-.+....||..+-.+|-++-
T Consensus       719 k~q~~~Sl~vrek~~taL~~l~  740 (743)
T COG5369         719 KIQAKDSLIVREKIGTALENLR  740 (743)
T ss_pred             HHhccCcHHHHHHHHHHHHhhh
Confidence            7777778899999988887763

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=7.3e-06  Score=86.32  Aligned_cols=330  Identities=12%  Similarity=0.126  Sum_probs=214.2

Q ss_pred             cHHHHHHHHHHHHHHHcCCCCCCcccc--c---ccchHHHHHhhcC-CCCcchHHHHHHHHhhcCChhhHHHHHhcCchH
Q 008827            7 YMEVVDAGARSLKMIYQSKMAPKYDFL--Q---EENMEFLLSLLNN-ESENVSGLGASIISHSCKTSLEQKLLFDAGVLK   80 (552)
Q Consensus         7 ~~~~~~~~l~~l~~l~~~~~~~~~~~~--~---~~~i~~l~~ll~~-~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~   80 (552)
                      +..-+..++.+|+|+...+-.- ..+|  +   -+..+.++.++.+ .++.++..+.+++.....+.+....+...|++-
T Consensus      1738 s~~~v~m~LtAL~Nli~~nPdl-asvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1738 TETKVLMTLTALANLVSANPDL-ASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLT 1816 (2235)
T ss_pred             hHHHHHHHHHHHHHHHhhCcch-hhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHH
Confidence            3446788999999997664322 1233  1   2456788888875 568899999999999988888888999999999


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHH-HHhcCChhhHHHHHHHHHHHhhhC---CC--
Q 008827           81 RLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE-IVKDRFARTRLLASLCLIVIRNAS---PC--  154 (552)
Q Consensus        81 ~L~~lL~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~vr~~A~~~L~~l~~~~---~~--  154 (552)
                      .|+.+|.+.++.|+-++..|..+++..+-.+.+..    .|++..+.. ++.+..+.+|..|+..|..+....   +.  
T Consensus      1817 ~LL~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~----hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ 1892 (2235)
T KOG1789|consen 1817 TLLTLLHSQPSMRARVLDVLYALSSNGQIGKEALE----HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVT 1892 (2235)
T ss_pred             HHHHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHh----cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCcee
Confidence            99999999889999999999999987655554443    344444444 567888999999999999886432   11  


Q ss_pred             ---------cchhhhhHHhHHHHHHHhcC---CCCch------hchHHHHHHHhhcCCHHH-------------------
Q 008827          155 ---------YLQDVGIKTKLINNLLELLD---DPGRV------GDEASFAFSSLIAEKEDM-------------------  197 (552)
Q Consensus       155 ---------~~~~~~~~~g~i~~Lv~ll~---~~~~v------~~~a~~~L~~l~~~~~~~-------------------  197 (552)
                               -..+.++ .|- +.-+.++.   +++++      +......+..++.+--..                   
T Consensus      1893 ITL~kFLP~~f~d~~R-D~P-EAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~ 1970 (2235)
T KOG1789|consen 1893 ITLIKFLPEIFADSLR-DSP-EAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTS 1970 (2235)
T ss_pred             eehHHhchHHHHHHHh-cCH-HHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchh
Confidence                     0011111 111 44455554   23321      222333344443211000                   


Q ss_pred             -------------HHHHHH------------hCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHH
Q 008827          198 -------------QKLAFE------------VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLK  252 (552)
Q Consensus       198 -------------~~~~~~------------~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~  252 (552)
                                   ++-+.+            .+.++++.+++..+.++....+--..++..|.+..+...+.+-..|.+|
T Consensus      1971 Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylP 2050 (2235)
T KOG1789|consen 1971 EADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLP 2050 (2235)
T ss_pred             hhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchH
Confidence                         000000            1334455555555443333344444555666666677777777789999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-chhHHHHH
Q 008827          253 LVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF-TTRRSTFI  331 (552)
Q Consensus       253 ~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~~  331 (552)
                      .++..+...+..+-..+...|+.|+.+  ..|-..+..-..+.+++..+... +....-|+.+|..+.... +..-....
T Consensus      2051 K~~~Am~~~n~s~P~SaiRVlH~Lsen--~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~L 2127 (2235)
T KOG1789|consen 2051 KFCTAMCLQNTSAPRSAIRVLHELSEN--QFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQML 2127 (2235)
T ss_pred             HHHHHHHhcCCcCcHHHHHHHHHHhhc--cHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence            999999988777778999999999876  34433355666677788777543 345568888888776422 22223456


Q ss_pred             hhCcHHHHHHhhcCC
Q 008827          332 RLGGVKLLVQLSKSM  346 (552)
Q Consensus       332 ~~g~i~~L~~ll~~~  346 (552)
                      ..|.+|.|+++|...
T Consensus      2128 K~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2128 KCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             ccCcHHHHHHHhccc
Confidence            789999999999764

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.72  E-value=6.5e-07  Score=87.45  Aligned_cols=225  Identities=15%  Similarity=0.163  Sum_probs=151.4

Q ss_pred             HHHHHHHHh--cCChhhHHHHHHHHHHHhhhCCCcchhhhhH------HhHHHHHHHhcC-CCCchhchHHHHHHHhhcC
Q 008827          123 LSCIIEIVK--DRFARTRLLASLCLIVIRNASPCYLQDVGIK------TKLINNLLELLD-DPGRVGDEASFAFSSLIAE  193 (552)
Q Consensus       123 l~~l~~ll~--~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~------~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~  193 (552)
                      ...++.+++  +.+.++.......+..+....+.. .+.+..      .....+++++++ .+..++..++..|+.++..
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~-~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSR-VELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSS-HHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence            333444443  467888888888888888876642 222332      125677888887 4456789999999999877


Q ss_pred             CHHHHHHHHHhCcHHHHHHhhhcCCC--ChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhc-----C--CCCHH
Q 008827          194 KEDMQKLAFEVNGVDKLYNHLQKGSL--HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL-----A--HDSSD  264 (552)
Q Consensus       194 ~~~~~~~~~~~~~i~~L~~~L~~~~~--~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L-----~--~~~~~  264 (552)
                      .+...... ..+.++.+++++.+...  +...+..++.+|.++.. .+.+|..+.+.++++.+.+.+     .  ..+..
T Consensus       136 ~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q  213 (312)
T PF03224_consen  136 GPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ  213 (312)
T ss_dssp             TTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred             CCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence            65533221 14567888888876321  13456888999999985 689999999999999999999     2  33568


Q ss_pred             HHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCch-hHHHHHhhCcHHHHHHh
Q 008827          265 VRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTT-RRSTFIRLGGVKLLVQL  342 (552)
Q Consensus       265 v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~-~~~~~~~~g~i~~L~~l  342 (552)
                      +++.++.|+|.|+.+ +..... +...++++.|+++++ ...+.+..-+..++.|++..... ....++..|+++.+-.+
T Consensus       214 l~Y~~ll~lWlLSF~-~~~~~~-~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L  291 (312)
T PF03224_consen  214 LQYQALLCLWLLSFE-PEIAEE-LNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL  291 (312)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHH-HHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-HHHHHH-HhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence            899999999999998 444444 677889999999997 56789999999999999976553 56677777777776666


Q ss_pred             hcC--CCHHHHH
Q 008827          343 SKS--MDSTIRL  352 (552)
Q Consensus       343 l~~--~~~~v~~  352 (552)
                      ...  +|+++..
T Consensus       292 ~~rk~~Dedl~e  303 (312)
T PF03224_consen  292 SERKWSDEDLTE  303 (312)
T ss_dssp             HSS--SSHHHHH
T ss_pred             hcCCCCCHHHHH
Confidence            554  3555443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.71  E-value=2.1e-06  Score=82.98  Aligned_cols=275  Identities=16%  Similarity=0.110  Sum_probs=186.4

Q ss_pred             HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC-CCCHHHHHHHHHHHHHhh
Q 008827          199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVS  277 (552)
Q Consensus       199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L~~ls  277 (552)
                      ..+...|++..|++++..++....+|..+.+.|-.+..  .++++.++..| +..++.+-+ ...++.....+..|.++-
T Consensus       174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF  250 (832)
T ss_pred             hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence            44566899999999999887666778899998888764  35677777766 555555555 456788889999999998


Q ss_pred             cccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-chhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHH
Q 008827          278 RSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF-TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR  356 (552)
Q Consensus       278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~  356 (552)
                      .+.+..++. ++..|++..++-+++..+|.+...|+-+|+|++... ...+..+++..+-+.|..+..+.++-+|.+|+.
T Consensus       251 KHSeet~~~-Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl  329 (832)
T KOG3678|consen  251 KHSEETCQR-LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL  329 (832)
T ss_pred             hhhHHHHHH-HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence            887778887 899999999999999999999999999999987633 345667888889899999988889999999999


Q ss_pred             HHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCch
Q 008827          357 ALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA  436 (552)
Q Consensus       357 aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~  436 (552)
                      +++.++...  +.-..+...+.+..+-.++.+-||.--          +..   .-++.-..+..-++.|+.+|++ +.-
T Consensus       330 AV~vlat~K--E~E~~VrkS~TlaLVEPlva~~DP~~F----------ARD---~hd~aQG~~~d~LqRLvPlLdS-~R~  393 (832)
T KOG3678|consen  330 AVAVLATNK--EVEREVRKSGTLALVEPLVASLDPGRF----------ARD---AHDYAQGRGPDDLQRLVPLLDS-NRL  393 (832)
T ss_pred             HHhhhhhhh--hhhHHHhhccchhhhhhhhhccCcchh----------hhh---hhhhhccCChHHHHHhhhhhhc-chh
Confidence            999997643  233444445544443344443333211          000   0001111110135667777776 444


Q ss_pred             hHHHHHHHHHHhhcC-CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          437 EIEIQGMYVLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       437 ~v~~~a~~~L~~la~-~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                      +-+.-+++-+..=++ .+......+++      +-|+++.|.++-+|+|...-+-|..+|.-+.
T Consensus       394 EAq~i~AF~l~~EAaIKs~Q~K~kVFs------eIGAIQaLKevaSS~d~vaakfAseALtviG  451 (832)
T KOG3678|consen  394 EAQCIGAFYLCAEAAIKSLQGKTKVFS------EIGAIQALKEVASSPDEVAAKFASEALTVIG  451 (832)
T ss_pred             hhhhhHHHHHHHHHHHHHhccchhHHH------HHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence            444333333322111 22223334554      3688999999999888765556666666555

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.69  E-value=1.7e-06  Score=84.50  Aligned_cols=224  Identities=16%  Similarity=0.163  Sum_probs=149.4

Q ss_pred             HHHHHHhcC--CCCHHHHHHHHHHHHHhhcccccccchhhhc------cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 008827          251 LKLVVDALA--HDSSDVRSAACMCLRSVSRSIKNLSAGSFMN------ETIVIPLVRLLDDTSTAVQVAALGAISNIVVD  322 (552)
Q Consensus       251 l~~lv~~L~--~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~------~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~  322 (552)
                      ...++.+|+  ..+.++....+..+..+....+..... +..      .....++++++.++|.-++..|+..+..+...
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~-~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVEL-FLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHH-HHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHH-HHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence            444555554  367888888888888887764433322 322      23678899999999999999999999999876


Q ss_pred             CchhHHHHHhhCcHHHHHHhhcC----CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhh-----c--CCCh
Q 008827          323 FTTRRSTFIRLGGVKLLVQLSKS----MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI-----C--DPEP  391 (552)
Q Consensus       323 ~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll-----~--~~~~  391 (552)
                      .+..... ...+.++.++.++.+    ++..++..++.+|.++..  .+..|..+.+.++++.+.+++     .  ..+.
T Consensus       136 ~~~~~~~-~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~--~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~  212 (312)
T PF03224_consen  136 GPKRSEK-LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR--SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGI  212 (312)
T ss_dssp             TTT--HH-HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT--SHHHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred             CCccccc-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC--cchhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence            5443322 125677888877765    345577889999999986  467999999999999999999     2  3445


Q ss_pred             hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChh-hHHHHHHHhhHhhhh
Q 008827          392 SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES-HKEAVMDQLLLRAEN  470 (552)
Q Consensus       392 ~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~-~~~~i~~~~~~~~~~  470 (552)
                      .++-+++-+++-++... +.++.+.+.+  +++.++.+++.+.+++|.+-++.++.|+....++ ....++.       +
T Consensus       213 Ql~Y~~ll~lWlLSF~~-~~~~~~~~~~--~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-------~  282 (312)
T PF03224_consen  213 QLQYQALLCLWLLSFEP-EIAEELNKKY--LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL-------C  282 (312)
T ss_dssp             HHHHHHHHHHHHHTTSH-HHHHHHHTTS--HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-------H
T ss_pred             hHHHHHHHHHHHHhcCH-HHHHHHhccc--hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH-------c
Confidence            68888999999998763 3455555555  8999999999888999999999999999986654 4555554       5


Q ss_pred             hhHHHHHHhhcC---CChhHHH
Q 008827          471 KAQSCIIKFLQS---NDSRLRT  489 (552)
Q Consensus       471 ~~v~~Lv~lL~~---~~~~~~~  489 (552)
                      ++. .+++.|+.   +|+++..
T Consensus       283 ~~l-~~l~~L~~rk~~Dedl~e  303 (312)
T PF03224_consen  283 GLL-KTLQNLSERKWSDEDLTE  303 (312)
T ss_dssp             -HH-HHHHHHHSS--SSHHHHH
T ss_pred             cHH-HHHHHHhcCCCCCHHHHH
Confidence            664 45555554   4555543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.65  E-value=3.4e-06  Score=81.54  Aligned_cols=274  Identities=13%  Similarity=0.123  Sum_probs=187.3

Q ss_pred             HHHHhcccHHHHHHhcCCCCH--HHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHh
Q 008827          243 SRCLSLQVLKLVVDALAHDSS--DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNI  319 (552)
Q Consensus       243 ~~~~~~~~l~~lv~~L~~~~~--~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl  319 (552)
                      +.+...|++..++.++..++.  .||..+...|-.+... ++ +.. +...| ...++.+-+ .+.++.+...++.|.++
T Consensus       174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN-~d~-va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-EN-RDR-VARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hh-hhH-Hhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            445567899999999998765  5688998888877544 22 222 34444 455555554 45688999999999999


Q ss_pred             hcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHH
Q 008827          320 VVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALA  399 (552)
Q Consensus       320 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~  399 (552)
                      -.++....+.+++.|++..++-..+..++.+-..+..+|+|++-+.....+.++++....++|+-+-.+.|.-.+..|+-
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl  329 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL  329 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence            88877777889999999999999999999999999999999988777778889999999999999888888888888988


Q ss_pred             HHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHh
Q 008827          400 LVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF  479 (552)
Q Consensus       400 ~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~l  479 (552)
                      +..-++.++.  .+..++..| .+.++-.++.+ -+|..          ++....   +.-     .+...+.++.|+.+
T Consensus       330 AV~vlat~KE--~E~~VrkS~-TlaLVEPlva~-~DP~~----------FARD~h---d~a-----QG~~~d~LqRLvPl  387 (832)
T KOG3678|consen  330 AVAVLATNKE--VEREVRKSG-TLALVEPLVAS-LDPGR----------FARDAH---DYA-----QGRGPDDLQRLVPL  387 (832)
T ss_pred             HHhhhhhhhh--hhHHHhhcc-chhhhhhhhhc-cCcch----------hhhhhh---hhh-----ccCChHHHHHhhhh
Confidence            8888776542  333344333 22222223333 22211          111000   000     01124556889999


Q ss_pred             hcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHH
Q 008827          480 LQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF  544 (552)
Q Consensus       480 L~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~  544 (552)
                      |+|..-+.+..+++-++.=+.-  ..-+...+.+.+.|+|..|.++..+++.--...|..||..|
T Consensus       388 LdS~R~EAq~i~AF~l~~EAaI--Ks~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi  450 (832)
T KOG3678|consen  388 LDSNRLEAQCIGAFYLCAEAAI--KSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI  450 (832)
T ss_pred             hhcchhhhhhhHHHHHHHHHHH--HHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence            9987777776666555433321  11122356788999999999998865554445567777655

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=5.3e-05  Score=76.60  Aligned_cols=442  Identities=16%  Similarity=0.115  Sum_probs=249.7

Q ss_pred             ccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhh
Q 008827           35 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQ  113 (552)
Q Consensus        35 ~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~  113 (552)
                      ...+..++.-++.+++++|+...+++.........   .......+.+.++++. ...-|..+...+..+..++...  .
T Consensus        95 ~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~---~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~--~  169 (569)
T KOG1242|consen   95 ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKG---LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIE--S  169 (569)
T ss_pred             hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc---cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHh--h
Confidence            34567777777788899999999998876532221   1112345667777775 4456777777777776654332  2


Q ss_pred             hccccCCccHHHHHHHHhcCChhhHHH-HHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC---C-CCchhchHHHHHH
Q 008827          114 FVGPDTGRTLSCIIEIVKDRFARTRLL-ASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD---D-PGRVGDEASFAFS  188 (552)
Q Consensus       114 ~~~~~~~~~l~~l~~ll~~~~~~vr~~-A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~---~-~~~v~~~a~~~L~  188 (552)
                      +.   ..+.+..+....++.....+.. +..+.-....+..     ..++.+.+|.+-.+|.   + .+.||..|..+..
T Consensus       170 ~~---~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~k  241 (569)
T KOG1242|consen  170 LK---EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-----PPFEPYIVPILPSILTNFGDKINKVREAAVEAAK  241 (569)
T ss_pred             hh---hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-----CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHH
Confidence            21   2567777888888776655553 3333333332221     1223455566655554   2 3567766655544


Q ss_pred             HhhcCCHHHHHHHHHhCc----HHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHH
Q 008827          189 SLIAEKEDMQKLAFEVNG----VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSD  264 (552)
Q Consensus       189 ~l~~~~~~~~~~~~~~~~----i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~  264 (552)
                      .+...        +...+    +|.++.-+...  .++.+.+++..++.++...+. .-...-..++|.+.+.|.+..++
T Consensus       242 ai~~~--------~~~~aVK~llpsll~~l~~~--kWrtK~aslellg~m~~~ap~-qLs~~lp~iiP~lsevl~DT~~e  310 (569)
T KOG1242|consen  242 AIMRC--------LSAYAVKLLLPSLLGSLLEA--KWRTKMASLELLGAMADCAPK-QLSLCLPDLIPVLSEVLWDTKPE  310 (569)
T ss_pred             HHHHh--------cCcchhhHhhhhhHHHHHHH--hhhhHHHHHHHHHHHHHhchH-HHHHHHhHhhHHHHHHHccCCHH
Confidence            33221        11222    33333333332  256778899999988754332 23344557999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhC----cHHHHH
Q 008827          265 VRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG----GVKLLV  340 (552)
Q Consensus       265 v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g----~i~~L~  340 (552)
                      +|.++..++..++.-.++.-     -..++|.|++-+.++...+ .++...|+.-+.  .    ..++.-    .+|.|.
T Consensus       311 vr~a~~~~l~~~~svidN~d-----I~~~ip~Lld~l~dp~~~~-~e~~~~L~~ttF--V----~~V~~psLalmvpiL~  378 (569)
T KOG1242|consen  311 VRKAGIETLLKFGSVIDNPD-----IQKIIPTLLDALADPSCYT-PECLDSLGATTF--V----AEVDAPSLALMVPILK  378 (569)
T ss_pred             HHHHHHHHHHHHHHhhccHH-----HHHHHHHHHHHhcCcccch-HHHHHhhcceee--e----eeecchhHHHHHHHHH
Confidence            99999999999977644422     2366788888888876433 233344432111  0    111122    344455


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcccC-ChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc
Q 008827          341 QLSKSMDSTIRLNALRALRNLIFLA-EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAED  419 (552)
Q Consensus       341 ~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~  419 (552)
                      +-+...+..++..++....|++.-. ++..-...+ ...+|-+-..+.++.|+++.-+.++|+.+..+...   .-+ ..
T Consensus       379 R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~---~~f-~d  453 (569)
T KOG1242|consen  379 RGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPEVRAVAARALGALLERLGE---VSF-DD  453 (569)
T ss_pred             HHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh---hcc-cc
Confidence            5555567778888999999998754 332222222 23466667777788999999999999888755211   111 11


Q ss_pred             CchHHHHHHHhcccCchhHHHHHHHHHHhhcCCC-hhhHHHHHHHhhHhhhhhhHHHHHHhhcCC--ChhHHHHHHHHHH
Q 008827          420 GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK-ESHKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVL  496 (552)
Q Consensus       420 ~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~--~~~~~~~a~~~l~  496 (552)
                        ..+.+...+.++.....+..++..+.....+. .+...            .+++.++....+.  ++.++..-.|.+.
T Consensus       454 --~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~------------~~~~~~~a~~~~~~~~~~~~dg~~~~~~  519 (569)
T KOG1242|consen  454 --LIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVE------------DILPEILANASSVLIDERIRDGVIWLFY  519 (569)
T ss_pred             --cccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHH------------HHHHHHHHHHhhccchhhhccCeeehhh
Confidence              46666666655333334555555555544322 11222            2233344433333  3446666666554


Q ss_pred             hhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHH
Q 008827          497 NLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLR  536 (552)
Q Consensus       497 ~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~  536 (552)
                      -+-.    ....+.+.. -..+++++.+-+.|.++.++..
T Consensus       520 ~lp~----~~~~~~~~y-i~~i~~~~~k~~ad~de~~~~~  554 (569)
T KOG1242|consen  520 LLPY----IFGFQFQPY-IHEILDEFLKGLADNDEKGRDT  554 (569)
T ss_pred             ccch----hhhHHhHHH-HHHHHHHHHHHhhhcCCccccc
Confidence            4432    122222222 2345677777665555555443

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.56  E-value=6.5e-05  Score=72.33  Aligned_cols=321  Identities=12%  Similarity=0.063  Sum_probs=210.9

Q ss_pred             chHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhccc---cCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhC
Q 008827           78 VLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGP---DTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNAS  152 (552)
Q Consensus        78 ~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~  152 (552)
                      .+..++.+++.  .++...-.+.-+..|...+......+...   .....-.+.+.++...+..+...+.+.+..++..+
T Consensus        66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g  145 (442)
T KOG2759|consen   66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG  145 (442)
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence            46677777775  34444556666666655554433222110   12334677888999999999998999999998877


Q ss_pred             CCcchhhhhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHH
Q 008827          153 PCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLA  230 (552)
Q Consensus       153 ~~~~~~~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~a  230 (552)
                      .+..... ...-....|...++  ++++....++++|..+...++ .+..++..+|+..++..+.++.....++-+.+.+
T Consensus       146 ~~~~~~~-e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifc  223 (442)
T KOG2759|consen  146 NCKMELS-ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFC  223 (442)
T ss_pred             cccccch-HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence            6432210 11112333334444  345667778888888886654 4566778899999999885443456677888999


Q ss_pred             HHHhhcCChhHHHHHHhcccHHHHHHhcCCC-CHHHHHHHHHHHHHhhcccc------cccchhhhccCcHHHHHHhhc-
Q 008827          231 LADMCSKLECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIK------NLSAGSFMNETIVIPLVRLLD-  302 (552)
Q Consensus       231 L~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~-~~~v~~~a~~~L~~ls~~~~------~~~~~~~~~~~~i~~Lv~lL~-  302 (552)
                      ++-|+. ++...+.+...+.++.+.+.+++. -..|-+-.+.+++|+....+      ..... ++. +-+++-++.|+ 
T Consensus       224 iWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~-mv~-~~v~k~l~~L~~  300 (442)
T KOG2759|consen  224 IWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQ-MVL-CKVLKTLQSLEE  300 (442)
T ss_pred             HHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHH-HHh-cCchHHHHHHHh
Confidence            999985 556666667778999999999865 45677888889999976632      11122 344 44555566664 


Q ss_pred             --CCCHHHHHHHHHHHHH-------hhcCCchhH------------------------HHHHhh--CcHHHHHHhhcCCC
Q 008827          303 --DTSTAVQVAALGAISN-------IVVDFTTRR------------------------STFIRL--GGVKLLVQLSKSMD  347 (552)
Q Consensus       303 --~~~~~v~~~a~~aL~n-------l~~~~~~~~------------------------~~~~~~--g~i~~L~~ll~~~~  347 (552)
                        -+|+++....-..-..       |+. ++...                        ..+-+.  ..+..|+++|+.++
T Consensus       301 rkysDEDL~~di~~L~e~L~~svq~LsS-FDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~  379 (442)
T KOG2759|consen  301 RKYSDEDLVDDIEFLTEKLKNSVQDLSS-FDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN  379 (442)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC
Confidence              2466554333222111       111 11111                        112222  37889999998765


Q ss_pred             -HHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827          348 -STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV  405 (552)
Q Consensus       348 -~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~  405 (552)
                       +.+-..|+.=++...+.- |+.+..+...|+-+.+.++++++|++|+-.|+.++..+.
T Consensus       380 Dp~iL~VAc~DIge~Vr~y-P~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm  437 (442)
T KOG2759|consen  380 DPIILCVACHDIGEYVRHY-PEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM  437 (442)
T ss_pred             CCceeehhhhhHHHHHHhC-chHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence             667777888888888754 678888889999999999999999999999998877664

>TIGR02270 conserved hypothetical protein

Probab=98.56  E-value=1e-05  Score=80.85  Aligned_cols=211  Identities=14%  Similarity=0.092  Sum_probs=151.1

Q ss_pred             cHHHHHHhcC-CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 008827          250 VLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS  328 (552)
Q Consensus       250 ~l~~lv~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~  328 (552)
                      +++.++..|. +++.+++..++.++...            .....+..|+..|.++++.++..++.+|+.+-        
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~------------~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------  114 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQ------------EDALDLRSVLAVLQAGPEGLCAGIQAALGWLG--------  114 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhcc------------CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence            6888888994 67788887776665221            11224789999999999999999999997542        


Q ss_pred             HHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC
Q 008827          329 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  408 (552)
Q Consensus       329 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  408 (552)
                         ..+..+.|..+++++++.+|..++.+++....  +           ..+.+..+|+++++.++..|+++|+.+....
T Consensus       115 ---~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~-----------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~  178 (410)
T TIGR02270       115 ---GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--D-----------PGPALEAALTHEDALVRAAALRALGELPRRL  178 (410)
T ss_pred             ---chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--C-----------hHHHHHHHhcCCCHHHHHHHHHHHHhhcccc
Confidence               13567889999999999999999888876422  1           3567888899999999999999999987543


Q ss_pred             cchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHH
Q 008827          409 INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLR  488 (552)
Q Consensus       409 ~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~  488 (552)
                                   ..+.|...+.+ .++.|+..+++.+..+..  +.                .+..+..+.........
T Consensus       179 -------------a~~~L~~al~d-~~~~VR~aA~~al~~lG~--~~----------------A~~~l~~~~~~~g~~~~  226 (410)
T TIGR02270       179 -------------SESTLRLYLRD-SDPEVRFAALEAGLLAGS--RL----------------AWGVCRRFQVLEGGPHR  226 (410)
T ss_pred             -------------chHHHHHHHcC-CCHHHHHHHHHHHHHcCC--Hh----------------HHHHHHHHHhccCccHH
Confidence                         46667667777 999999999999987743  21                12344443444444444


Q ss_pred             HHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHh
Q 008827          489 TAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN  545 (552)
Q Consensus       489 ~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~  545 (552)
                      ..+...+...-      .         ..+++.|..+++++  .+++.+.+|++.+-
T Consensus       227 ~~l~~~lal~~------~---------~~a~~~L~~ll~d~--~vr~~a~~AlG~lg  266 (410)
T TIGR02270       227 QRLLVLLAVAG------G---------PDAQAWLRELLQAA--ATRREALRAVGLVG  266 (410)
T ss_pred             HHHHHHHHhCC------c---------hhHHHHHHHHhcCh--hhHHHHHHHHHHcC
Confidence            44333333221      1         14678899999854  48999999998764

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.52  E-value=0.00018  Score=70.29  Aligned_cols=473  Identities=15%  Similarity=0.087  Sum_probs=238.7

Q ss_pred             cHHHHHHHHHHHHHHHcCCCCCCccc-------c---cccchHHHHHh-hcCCCCcchHHHHHHHHhhcCChhhHHHHHh
Q 008827            7 YMEVVDAGARSLKMIYQSKMAPKYDF-------L---QEENMEFLLSL-LNNESENVSGLGASIISHSCKTSLEQKLLFD   75 (552)
Q Consensus         7 ~~~~~~~~l~~l~~l~~~~~~~~~~~-------~---~~~~i~~l~~l-l~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~   75 (552)
                      ..|+...++.|+.++..+  .++..+       +   ++++-|.|+-+ |+++++..+..|.++++.+-.....-....+
T Consensus         9 ~akvr~~al~~~~~~~~~--~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~   86 (728)
T KOG4535|consen    9 QAKVRQGALVCFLSTIKS--IEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAE   86 (728)
T ss_pred             HHHHHhhHHHHHHHHHhh--hhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            457788899999887433  222222       2   34555655433 5677888888888887765332211000000


Q ss_pred             ----cCc--------------hHHHHHhhc--CCHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCCh
Q 008827           76 ----AGV--------------LKRLTSLLG--GSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFA  135 (552)
Q Consensus        76 ----~g~--------------i~~L~~lL~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~  135 (552)
                          ...              -..|+-.|.  +++.+...+++||.++....+-..-++.-  -......+-.++++.|+
T Consensus        87 ~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~--~~~~~~~ik~~i~~~d~  164 (728)
T KOG4535|consen   87 DTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSL--LTKVWNQIKPYIRHKDV  164 (728)
T ss_pred             ccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHH--HHHHHHHHHHHhhcCCC
Confidence                000              112222333  25577788999999998776544322210  02233445568899999


Q ss_pred             hhHHHHHHHHHHHhhhCC-C-------------------cch--hhhhHHhHHHHHHH----------------------
Q 008827          136 RTRLLASLCLIVIRNASP-C-------------------YLQ--DVGIKTKLINNLLE----------------------  171 (552)
Q Consensus       136 ~vr~~A~~~L~~l~~~~~-~-------------------~~~--~~~~~~g~i~~Lv~----------------------  171 (552)
                      .|+..+...+.-+..... .                   |.-  +.-.+--.-|.+.+                      
T Consensus       165 ~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i  244 (728)
T KOG4535|consen  165 NVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISI  244 (728)
T ss_pred             ChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeee
Confidence            999998887776644320 0                   000  00000000000111                      


Q ss_pred             ----------------hcC---CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHH
Q 008827          172 ----------------LLD---DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALA  232 (552)
Q Consensus       172 ----------------ll~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~  232 (552)
                                      .+.   ++..+|.++.++|.-++.+-.-.+....+  ....+...+.+  ..|.+++.+...+.
T Consensus       245 ~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~--~~p~~~l~~a~ll~  320 (728)
T KOG4535|consen  245 VVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGE--ADPSIQLHGAKLLE  320 (728)
T ss_pred             eecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCC--CChHHHHHHHHHHH
Confidence                            111   22334556666666555332221111111  11222222222  45778888777776


Q ss_pred             Hhhc-----CChhHHHHHHhcccHHH------HHHhcC-CCCHHHHHHHHHHHHHhhccc-ccccchhhhccCcHHHHHH
Q 008827          233 DMCS-----KLECCRSRCLSLQVLKL------VVDALA-HDSSDVRSAACMCLRSVSRSI-KNLSAGSFMNETIVIPLVR  299 (552)
Q Consensus       233 ~l~~-----~~~~~~~~~~~~~~l~~------lv~~L~-~~~~~v~~~a~~~L~~ls~~~-~~~~~~~~~~~~~i~~Lv~  299 (552)
                      .+..     +.++..+.-...|-+-.      .-.... +..+..+.+.|.++.++.... ..+...   .....+....
T Consensus       321 ~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~---~~T~~~~Fl~  397 (728)
T KOG4535|consen  321 ELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPND---RQTLCITFLL  397 (728)
T ss_pred             HHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCc---chhhhHHHHh
Confidence            6542     12222222111121110      011111 223466778888888885431 111110   0111222222


Q ss_pred             hhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccc---CChH---hHHH
Q 008827          300 LLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL---AEDK---CKEE  372 (552)
Q Consensus       300 lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~---~~~~---~~~~  372 (552)
                      -+. +++.-++.+|..+.+-++.+.........-.++...+...+.+..-..|..+.|+++|++..   .-|.   ..++
T Consensus       398 GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR  477 (728)
T KOG4535|consen  398 GCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQER  477 (728)
T ss_pred             cccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHH
Confidence            223 33455777888888877766554443444456666677777777788999999999999642   1111   2233


Q ss_pred             HHHhhcHHHHHhhh---cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc-CchHHH-HHHHhc---ccCchhHHHHHHH
Q 008827          373 IFMELTASLLASLI---CDPEPSVQEQALALVRNLVDGRINSVEYIFAED-GIILDA-VGRQLR---IASKAEIEIQGMY  444 (552)
Q Consensus       373 i~~~~~~~~l~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~-~~~~~~-l~~~L~---~~~~~~v~~~a~~  444 (552)
                      +.... +..+.+.-   .-+..+|+.++.++|+|+..-    .+.+.+.+ +.+++- ..+++.   ......|+.++|+
T Consensus       478 ~sg~l-l~~~~~~A~~~~Ad~dkV~~navraLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCy  552 (728)
T KOG4535|consen  478 FSGLL-LLKMLRSAIEASADKDKVKSNAVRALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACY  552 (728)
T ss_pred             HHHHH-HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHH
Confidence            33222 22222221   124567999999999998732    11121111 001111 111221   1256789999999


Q ss_pred             HHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC-CChhHHHHHHHHHHhhcCC
Q 008827          445 VLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS-NDSRLRTAAVWAVLNLTCS  501 (552)
Q Consensus       445 ~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~-~~~~~~~~a~~~l~~l~~~  501 (552)
                      +++|+..+..-..+   +.-|   ..-+++.|..++.+ .|+++|..|+.+|..-...
T Consensus       553 a~gNLfkn~a~~lq---~~~w---A~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r  604 (728)
T KOG4535|consen  553 AMGNLFKNPALPLQ---TAPW---ASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR  604 (728)
T ss_pred             HHHHhhcCcccccc---CCCc---hHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence            99999974331011   0000   02345677777765 7899999999999877653

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=1.6e-05  Score=82.00  Aligned_cols=410  Identities=18%  Similarity=0.179  Sum_probs=236.5

Q ss_pred             ccchHHHHHhhcCCCCcch-HHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhh
Q 008827           35 EENMEFLLSLLNNESENVS-GLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVS  112 (552)
Q Consensus        35 ~~~i~~l~~ll~~~~~~~~-~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~  112 (552)
                      .+.++.+-+-+.+....-+ ..+-.+|+.+.-....      .+..+.++..... +-..+..+=.=+.+-+...++.. 
T Consensus        12 k~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~Dv------SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-   84 (734)
T KOG1061|consen   12 KGEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDV------SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-   84 (734)
T ss_pred             hhhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcch------HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-
Confidence            3445555555554443333 3444455555432221      1223344444443 22344444334444455554442 


Q ss_pred             hhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhh
Q 008827          113 QFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLI  191 (552)
Q Consensus       113 ~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~  191 (552)
                             ...+..++.-..+++|.+|..|.+..+.+-.       + -+......+|.+.++ +++.+|..++....++-
T Consensus        85 -------~~avnt~~kD~~d~np~iR~lAlrtm~~l~v-------~-~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~  149 (734)
T KOG1061|consen   85 -------ILAVNTFLKDCEDPNPLIRALALRTMGCLRV-------D-KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF  149 (734)
T ss_pred             -------HhhhhhhhccCCCCCHHHHHHHhhceeeEee-------h-HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhh
Confidence                   3455667777789999999999987765432       1 234557888889998 56889999999999988


Q ss_pred             cCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHH
Q 008827          192 AEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACM  271 (552)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~  271 (552)
                      ..+++   ...+.|.++.|-.++.++  +|.+..+|+.+|..+...+++.-........+..++..+..-+.   ..-+.
T Consensus       150 ~~~~~---~~~~~gl~~~L~~ll~D~--~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~E---W~qi~  221 (734)
T KOG1061|consen  150 DIDPD---LVEDSGLVDALKDLLSDS--NPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTE---WGQIF  221 (734)
T ss_pred             cCChh---hccccchhHHHHHHhcCC--CchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhh---hhHHH
Confidence            77654   345677788888888855  48889999999998876543311111111233333444433332   22333


Q ss_pred             HHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHH
Q 008827          272 CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIR  351 (552)
Q Consensus       272 ~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~  351 (552)
                      .+-.+++..+...   .-...++..+...|++.++.+...+...+.++........ ...-...-++++.++.+.. .++
T Consensus       222 IL~~l~~y~p~d~---~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~-~~~~~K~~~pl~tlls~~~-e~q  296 (734)
T KOG1061|consen  222 ILDCLAEYVPKDS---REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN-ELLFKKVAPPLVTLLSSES-EIQ  296 (734)
T ss_pred             HHHHHHhcCCCCc---hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH-HHHHHHhcccceeeecccc-hhh
Confidence            4444444432211   1223567778888889899999999999988876544422 2233456667777776665 555


Q ss_pred             HHHHHHHHHhccc----------------CChH----hHHHHHHh----hcHHH----HHhhhcCCChhHHHHHHHHHHH
Q 008827          352 LNALRALRNLIFL----------------AEDK----CKEEIFME----LTASL----LASLICDPEPSVQEQALALVRN  403 (552)
Q Consensus       352 ~~a~~aL~~l~~~----------------~~~~----~~~~i~~~----~~~~~----l~~ll~~~~~~v~~~a~~~L~~  403 (552)
                      ..++.-+.-+...                .+|.    .|.+++..    ..++.    +...-..-|.+...++++++++
T Consensus       297 yvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~  376 (734)
T KOG1061|consen  297 YVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGR  376 (734)
T ss_pred             HHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhh
Confidence            5555444333221                1221    11111111    11122    2222235577788889999999


Q ss_pred             hhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC-
Q 008827          404 LVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS-  482 (552)
Q Consensus       404 l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~-  482 (552)
                      ++..-++.      ++  +++.|..+++. +..-+...++-.+..+....+..-+.++            +.+...+.+ 
T Consensus       377 ~aik~e~~------~~--cv~~lLell~~-~~~yvvqE~~vvi~dilRkyP~~~~~vv------------~~l~~~~~sl  435 (734)
T KOG1061|consen  377 LAIKAEQS------ND--CVSILLELLET-KVDYVVQEAIVVIRDILRKYPNKYESVV------------AILCENLDSL  435 (734)
T ss_pred             hhhhhhhh------hh--hHHHHHHHHhh-cccceeeehhHHHHhhhhcCCCchhhhh------------hhhccccccc
Confidence            87543221      22  77888888876 5555666666677777665553333333            344444544 


Q ss_pred             CChhHHHHHHHHHHhhcC
Q 008827          483 NDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       483 ~~~~~~~~a~~~l~~l~~  500 (552)
                      .+++.|.+-.|.++..+.
T Consensus       436 ~epeak~amiWilg~y~~  453 (734)
T KOG1061|consen  436 QEPEAKAALIWILGEYAE  453 (734)
T ss_pred             CChHHHHHHHHHHhhhhh
Confidence            578899999999998875

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=0.00064  Score=69.51  Aligned_cols=259  Identities=14%  Similarity=0.149  Sum_probs=142.2

Q ss_pred             HHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC---CHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 008827           40 FLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG---SLIQRDASLESIATIFKNNPEVVSQFVG  116 (552)
Q Consensus        40 ~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~  116 (552)
                      .+..=|.|.++.-...|..+++++- ..+.++.+..  -|+   ++|.+   .+-++..|.-||..|-+.+|+..+    
T Consensus       115 ~iknDL~srn~~fv~LAL~~I~niG-~re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~~----  184 (938)
T KOG1077|consen  115 SIKNDLSSRNPTFVCLALHCIANIG-SREMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN----  184 (938)
T ss_pred             HHHhhhhcCCcHHHHHHHHHHHhhc-cHhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccccC----
Confidence            3344444566767777777777774 3344443322  233   45553   357888888899998877777632    


Q ss_pred             ccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhh----------hh-HHh---------------HHHHHH
Q 008827          117 PDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDV----------GI-KTK---------------LINNLL  170 (552)
Q Consensus       117 ~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~----------~~-~~g---------------~i~~Lv  170 (552)
                        .++-...++.+++|.+..|-.+|...+..+++..+....-.          .+ ..|               ..-.++
T Consensus       185 --~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~  262 (938)
T KOG1077|consen  185 --PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLL  262 (938)
T ss_pred             --hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHH
Confidence              24566777777777777777777666666666544311100          00 000               011122


Q ss_pred             HhcC-----CCCchhchH---HHHHHHhhcCCHHH---HHHHHH---------------------hCcHHHHHHhhhcCC
Q 008827          171 ELLD-----DPGRVGDEA---SFAFSSLIAEKEDM---QKLAFE---------------------VNGVDKLYNHLQKGS  218 (552)
Q Consensus       171 ~ll~-----~~~~v~~~a---~~~L~~l~~~~~~~---~~~~~~---------------------~~~i~~L~~~L~~~~  218 (552)
                      ++|+     +++..+..-   ..-+.+-+.+.+..   +...+.                     ..++..|.++|... 
T Consensus       263 rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~r-  341 (938)
T KOG1077|consen  263 RLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHR-  341 (938)
T ss_pred             HHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcc-
Confidence            2222     111122111   11111222211111   100000                     12234444544443 


Q ss_pred             CChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC-CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHH
Q 008827          219 LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPL  297 (552)
Q Consensus       219 ~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~L  297 (552)
                       ++.+|--++..++.|+.. +...+.+...  ...++..|+ ..+..+|..++..|..+++. ++.       ..++..|
T Consensus       342 -E~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~-~Na-------k~IV~el  409 (938)
T KOG1077|consen  342 -ETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNA-------KQIVAEL  409 (938)
T ss_pred             -cccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch-hhH-------HHHHHHH
Confidence             245666666666666653 2222333322  677888888 77999999999999999876 332       2456778


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhhcCC
Q 008827          298 VRLLDDTSTAVQVAALGAISNIVVDF  323 (552)
Q Consensus       298 v~lL~~~~~~v~~~a~~aL~nl~~~~  323 (552)
                      ++.|.+.++.+|+.-+.=++-|+..+
T Consensus       410 LqYL~tAd~sireeivlKvAILaEKy  435 (938)
T KOG1077|consen  410 LQYLETADYSIREEIVLKVAILAEKY  435 (938)
T ss_pred             HHHHhhcchHHHHHHHHHHHHHHHHh
Confidence            99999899988888776666666543

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=5.1e-05  Score=75.41  Aligned_cols=320  Identities=13%  Similarity=0.105  Sum_probs=189.0

Q ss_pred             hHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCCh
Q 008827          161 IKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE  239 (552)
Q Consensus       161 ~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~  239 (552)
                      ..++.+|+.+..+.+ +..++..||..+.|++.....- ...+-......++++..+++  ..++. +...+-.+-.+-.
T Consensus        81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~-v~~~Fn~iFdvL~klsaDsd--~~V~~-~aeLLdRLikdIV  156 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE-VLVYFNEIFDVLCKLSADSD--QNVRG-GAELLDRLIKDIV  156 (675)
T ss_pred             HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC-cccchHHHHHHHHHHhcCCc--ccccc-HHHHHHHHHHHhc
Confidence            557888888888885 5789999999999887421110 00111122345555444432  33332 2222222221100


Q ss_pred             hHHH-HHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008827          240 CCRS-RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN  318 (552)
Q Consensus       240 ~~~~-~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~n  318 (552)
                      .-+. .+-=.+++|.+-+-+...++..|...+.-|..+-.. +....- -.-..+.+-|+.+|.|+++++|..+-.++.+
T Consensus       157 te~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~-~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~  234 (675)
T KOG0212|consen  157 TESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMI-SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE  234 (675)
T ss_pred             cccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHH-hcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            0000 111124566666666678899998888877776443 222110 0234567778889999999999888877776


Q ss_pred             hhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCCh-hHHHHH
Q 008827          319 IVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP-SVQEQA  397 (552)
Q Consensus       319 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~-~v~~~a  397 (552)
                      +...-.+.-..+--...++.++.-++++++.++..|+.-+..+..-.++  .--..-.+.+..++.++.+.++ .+.+.+
T Consensus       235 fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~--~~l~~~s~il~~iLpc~s~~e~~~i~~~a  312 (675)
T KOG0212|consen  235 FLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR--DLLLYLSGILTAILPCLSDTEEMSIKEYA  312 (675)
T ss_pred             HHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc--chhhhhhhhhhhcccCCCCCccccHHHHH
Confidence            5431110000111235788999999999999999998888877653321  1111234455666667766555 344433


Q ss_pred             H---HHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHH
Q 008827          398 L---ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQS  474 (552)
Q Consensus       398 ~---~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~  474 (552)
                      .   ..+..++.......+  +.-+ .+++.+.+.+.+ ...+.+..++.-+..+-...+...-..        .+.+.+
T Consensus       313 ~~~n~~l~~l~s~~~~~~~--id~~-~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~~~p~ql~~h--------~~~if~  380 (675)
T KOG0212|consen  313 QMVNGLLLKLVSSERLKEE--IDYG-SIIEVLTKYLSD-DREETRIAVLNWIILLYHKAPGQLLVH--------NDSIFL  380 (675)
T ss_pred             HHHHHHHHHHHhhhhhccc--cchH-HHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhCcchhhhh--------ccHHHH
Confidence            3   233333322110000  1111 268888888877 777888888877776665544322212        256667


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          475 CIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       475 ~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      -|.+-|++++..|...+...+.+++.
T Consensus       381 tLL~tLsd~sd~vvl~~L~lla~i~~  406 (675)
T KOG0212|consen  381 TLLKTLSDRSDEVVLLALSLLASICS  406 (675)
T ss_pred             HHHHhhcCchhHHHHHHHHHHHHHhc
Confidence            88899999999999999999999996

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=0.00035  Score=65.06  Aligned_cols=361  Identities=12%  Similarity=0.080  Sum_probs=218.2

Q ss_pred             ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCc---chhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHH
Q 008827          121 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCY---LQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKED  196 (552)
Q Consensus       121 ~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~---~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~  196 (552)
                      ...+.+-.-+..++..|+..|.+.+..+....+..   ....++.+++.+.++..+. ++.+|...|...+..++.....
T Consensus        82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaa  161 (524)
T KOG4413|consen   82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA  161 (524)
T ss_pred             hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence            34455556677889999999999888887655422   1233557889999999987 6677877888888887754333


Q ss_pred             HHHHHHHhCcHHH--HHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC-CCHHHHHHHHHHH
Q 008827          197 MQKLAFEVNGVDK--LYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH-DSSDVRSAACMCL  273 (552)
Q Consensus       197 ~~~~~~~~~~i~~--L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~-~~~~v~~~a~~~L  273 (552)
                      . ..+++.+....  +.++-...+  .-.|...+..+-.+.+-++.........|.+..+..-|+. .+.-|+.......
T Consensus       162 l-eaiFeSellDdlhlrnlaakcn--diaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElv  238 (524)
T KOG4413|consen  162 L-EAIFESELLDDLHLRNLAAKCN--DIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELV  238 (524)
T ss_pred             H-HHhcccccCChHHHhHHHhhhh--hHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHH
Confidence            2 34555554432  222222221  2345555666666666666666677788999999888875 7788888888888


Q ss_pred             HHhhcccccccchhhhccCcHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCchh---HHHHHhh--CcHHHHHHhhcCC
Q 008827          274 RSVSRSIKNLSAGSFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTTR---RSTFIRL--GGVKLLVQLSKSM  346 (552)
Q Consensus       274 ~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~---~~~~~~~--g~i~~L~~ll~~~  346 (552)
                      ..|+.. ...++- +.+.|+|..+..++.  +++|--...+....+.+.....-.   -+.+.+.  -.++...++....
T Consensus       239 teLaet-eHgref-laQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn  316 (524)
T KOG4413|consen  239 TELAET-EHGREF-LAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN  316 (524)
T ss_pred             HHHHHH-hhhhhh-cchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC
Confidence            888765 333433 567899999999886  455544444554444433211100   0112211  2445556677778


Q ss_pred             CHHHHHHHHHHHHHhcccCChHhHHHHHHhhc--HHHHHhhhcCCC-hhHHHHHHHHHHHhhcC---CcchH--------
Q 008827          347 DSTIRLNALRALRNLIFLAEDKCKEEIFMELT--ASLLASLICDPE-PSVQEQALALVRNLVDG---RINSV--------  412 (552)
Q Consensus       347 ~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~--~~~l~~ll~~~~-~~v~~~a~~~L~~l~~~---~~~~~--------  412 (552)
                      ++..+..|+.+++-+..  +.+-++.+...|.  ..+++.-..+.+ ..-|+.++.+|.+++.-   .++++        
T Consensus       317 DpdaieaAiDalGilGS--nteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeer  394 (524)
T KOG4413|consen  317 DPDAIEAAIDALGILGS--NTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEER  394 (524)
T ss_pred             CchHHHHHHHHHHhccC--CcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHH
Confidence            89999999999998854  3334555555443  233333222333 33566677777776532   22211        


Q ss_pred             --HHHHhhcC-----chHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC--
Q 008827          413 --EYIFAEDG-----IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN--  483 (552)
Q Consensus       413 --~~i~~~~~-----~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~--  483 (552)
                        ..++....     .-.+++...++. +.++++..+...+..++..+. ....|+..      .+++..++..-...  
T Consensus       395 lrclifdaaaqstkldPleLFlgilqQ-pfpEihcAalktfTAiaaqPW-alkeifak------eefieiVtDastEhaK  466 (524)
T KOG4413|consen  395 LRCLIFDAAAQSTKLDPLELFLGILQQ-PFPEIHCAALKTFTAIAAQPW-ALKEIFAK------EEFIEIVTDASTEHAK  466 (524)
T ss_pred             HHHHHHHHHhhccCCChHHHHHHHHcC-CChhhHHHHHHHHHHHHcCcH-HHHHHhcC------ccceeeecccchhhHH
Confidence              12222211     135667777776 889999999999999998654 45556552      55555444332221  


Q ss_pred             -ChhHHHHHHHHHH
Q 008827          484 -DSRLRTAAVWAVL  496 (552)
Q Consensus       484 -~~~~~~~a~~~l~  496 (552)
                       ..+.|-+++.+|.
T Consensus       467 aakdAkYeccKAia  480 (524)
T KOG4413|consen  467 AAKDAKYECCKAIA  480 (524)
T ss_pred             HHHHHHHHHHHHHH
Confidence             1234455555554

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=0.00038  Score=71.35  Aligned_cols=254  Identities=16%  Similarity=0.129  Sum_probs=168.0

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHH
Q 008827          123 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLA  201 (552)
Q Consensus       123 l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~  201 (552)
                      .+.++.++++..|.+|..|...++.+.-..++.      -.-++|.|++=|.+ ++.|+..|..++..|+..+|.+.-  
T Consensus       146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA------lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--  217 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA------LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--  217 (877)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh------HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc--
Confidence            455788999999999999999999887754431      13589999999985 477999999999999998886421  


Q ss_pred             HHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCC-HHHHHHHHHHHHHh--hc
Q 008827          202 FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS-SDVRSAACMCLRSV--SR  278 (552)
Q Consensus       202 ~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~-~~v~~~a~~~L~~l--s~  278 (552)
                         ..-|.+.+++.+++..+ +.-..+..+++|+.-.|...+.     ++|++.+++++.. ..+.+.+..++..-  +.
T Consensus       218 ---~LAP~ffkllttSsNNW-mLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  218 ---QLAPLFYKLLVTSSNNW-VLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             ---cccHHHHHHHhccCCCe-ehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence               23477888887775444 4566778888888766665443     5889999988654 35555555554332  22


Q ss_pred             ccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827          279 SIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL  358 (552)
Q Consensus       279 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL  358 (552)
                      ..++...   .-.-++..|=.++.++|+.++.-++-+++.+...++..-+     .--+.+++.|.+.|+.+|..|+..|
T Consensus       289 g~~d~~a---siqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdLl  360 (877)
T KOG1059|consen  289 GMSDHSA---SIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDLL  360 (877)
T ss_pred             CCCCcHH---HHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHHH
Confidence            2111110   1112345566677899999999999999999876554221     1235677889999999999999999


Q ss_pred             HHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC
Q 008827          359 RNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  408 (552)
Q Consensus       359 ~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  408 (552)
                      .-+....   +-.+++..    .+.++...+....+-..+.-+-.+|..+
T Consensus       361 ~gmVskk---Nl~eIVk~----LM~~~~~ae~t~yrdell~~II~iCS~s  403 (877)
T KOG1059|consen  361 YGMVSKK---NLMEIVKT----LMKHVEKAEGTNYRDELLTRIISICSQS  403 (877)
T ss_pred             HHHhhhh---hHHHHHHH----HHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence            8886522   22222211    1122223333456655555555565543

>PF05536 Neurochondrin: Neurochondrin

Probab=98.44  E-value=0.0018  Score=67.79  Aligned_cols=233  Identities=15%  Similarity=0.090  Sum_probs=153.4

Q ss_pred             chHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhh---hhhccccCCccHHHHHHHHhc-------CChhhHHHHHHHHH
Q 008827           78 VLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVV---SQFVGPDTGRTLSCIIEIVKD-------RFARTRLLASLCLI  146 (552)
Q Consensus        78 ~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~---~~~~~~~~~~~l~~l~~ll~~-------~~~~vr~~A~~~L~  146 (552)
                      .++.-+.+|++ ++.-|..++-.+.+++..++...   +++.+   .=+..++-+|+++       +....+..|+..|.
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~---aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~   82 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFE---AIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA   82 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHH---hcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence            35667788887 56678889999999987765322   23332   3345777788876       44566778999999


Q ss_pred             HHhhhCCCcchhhhhHHhHHHHHHHhcCC-CC-chhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhH
Q 008827          147 VIRNASPCYLQDVGIKTKLINNLLELLDD-PG-RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRF  224 (552)
Q Consensus       147 ~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~  224 (552)
                      .++....- ..+ ----+.||.|++.+.. +. .+..++..+|..+++. +.-++.+.+.|+++.|++.+.+.   +...
T Consensus        83 ~f~~~~~~-a~~-~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~~---~~~~  156 (543)
T PF05536_consen   83 AFCRDPEL-ASS-PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPNQ---SFQM  156 (543)
T ss_pred             HHcCChhh-hcC-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHhC---cchH
Confidence            98873321 111 1124689999999984 34 6778999999999954 45567889999999999988874   5578


Q ss_pred             HHHHHHHHHhhcCChhHHHHHHh-----cccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc-cchhhhccCcHHHH-
Q 008827          225 EGILLALADMCSKLECCRSRCLS-----LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL-SAGSFMNETIVIPL-  297 (552)
Q Consensus       225 ~~a~~aL~~l~~~~~~~~~~~~~-----~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~-~~~~~~~~~~i~~L-  297 (552)
                      +.++..+.+++.....  +...+     ..+++.+...+.......+...+..|..+-...+.. ... .......+.+ 
T Consensus       157 E~Al~lL~~Lls~~~~--~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~-~~~~~W~~~l~  233 (543)
T PF05536_consen  157 EIALNLLLNLLSRLGQ--KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLES-PPSPKWLSDLR  233 (543)
T ss_pred             HHHHHHHHHHHHhcch--hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCcccccc-CChhhhHHHHH
Confidence            8999999988764321  11111     134566666666666677788888888885543211 111 2333444444 


Q ss_pred             ---HHhhc-CCCHHHHHHHHHHHHHhhcC
Q 008827          298 ---VRLLD-DTSTAVQVAALGAISNIVVD  322 (552)
Q Consensus       298 ---v~lL~-~~~~~v~~~a~~aL~nl~~~  322 (552)
                         ..+|+ ...++-|..|....+.+...
T Consensus       234 ~gl~~iL~sr~~~~~R~~al~Laa~Ll~~  262 (543)
T PF05536_consen  234 KGLRDILQSRLTPSQRDPALNLAASLLDL  262 (543)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence               44454 35677788777777766643

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=0.00039  Score=71.96  Aligned_cols=283  Identities=17%  Similarity=0.139  Sum_probs=170.0

Q ss_pred             HHHHHhhcC-CHHHHHHHHHHHHH-HhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcch
Q 008827           80 KRLTSLLGG-SLIQRDASLESIAT-IFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQ  157 (552)
Q Consensus        80 ~~L~~lL~~-~~~v~~~al~~L~~-l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~  157 (552)
                      .-|.++|.+ .+..+..|++-+.. |+++. ++         ...++.+++...+.++++|..---.|...+...++.+.
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~-dv---------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL  107 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGK-DV---------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL  107 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcCC-cH---------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee
Confidence            468888987 55666667665544 45443 33         35678899999999999999877777777765443211


Q ss_pred             hhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhc
Q 008827          158 DVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCS  236 (552)
Q Consensus       158 ~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~  236 (552)
                            --|..+-+-|+++ +.+|..|..+|+.+-.       .++..=.+-.+-++..+.  .+-+|..|+.||-.+-.
T Consensus       108 ------LSIntfQk~L~DpN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~~~D~--s~yVRk~AA~AIpKLYs  172 (968)
T KOG1060|consen  108 ------LSINTFQKALKDPNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKAVTDP--SPYVRKTAAHAIPKLYS  172 (968)
T ss_pred             ------eeHHHHHhhhcCCcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHhcCC--cHHHHHHHHHhhHHHhc
Confidence                  2355566667754 4578888887775521       111100111222333343  47789999999988876


Q ss_pred             CChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827          237 KLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAI  316 (552)
Q Consensus       237 ~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL  316 (552)
                      -+++...     .++..+-.+|.+.++.|.-+|+.++-.++-..    -.  .-++-...+.++|.+-+..=|......|
T Consensus       173 Ld~e~k~-----qL~e~I~~LLaD~splVvgsAv~AF~evCPer----ld--LIHknyrklC~ll~dvdeWgQvvlI~mL  241 (968)
T KOG1060|consen  173 LDPEQKD-----QLEEVIKKLLADRSPLVVGSAVMAFEEVCPER----LD--LIHKNYRKLCRLLPDVDEWGQVVLINML  241 (968)
T ss_pred             CChhhHH-----HHHHHHHHHhcCCCCcchhHHHHHHHHhchhH----HH--HhhHHHHHHHhhccchhhhhHHHHHHHH
Confidence            5555443     35677788889999999999998887765431    11  2345667788888776666666666666


Q ss_pred             HHhhcCC--ch-h---------------------HHHHHhhCcH----HHHHHhhcCCCHHHHHHHHHHHHHhcccCChH
Q 008827          317 SNIVVDF--TT-R---------------------RSTFIRLGGV----KLLVQLSKSMDSTIRLNALRALRNLIFLAEDK  368 (552)
Q Consensus       317 ~nl~~~~--~~-~---------------------~~~~~~~g~i----~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~  368 (552)
                      ..-+...  .+ .                     +..+...--+    ...-.++.+.++.+...++.+...++..    
T Consensus       242 ~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~----  317 (968)
T KOG1060|consen  242 TRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK----  317 (968)
T ss_pred             HHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH----
Confidence            5544321  00 0                     0001111112    2233456777888888888888888541    


Q ss_pred             hHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827          369 CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  407 (552)
Q Consensus       369 ~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  407 (552)
                      .+    ...+...|+++|++. ..+|.-.+..+..++..
T Consensus       318 ~~----~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~  351 (968)
T KOG1060|consen  318 NQ----VTKIAKALVRLLRSN-REVQYVVLQNIATISIK  351 (968)
T ss_pred             HH----HHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhc
Confidence            11    123466788887753 34454444444444433

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=2.1e-05  Score=79.35  Aligned_cols=294  Identities=14%  Similarity=0.081  Sum_probs=182.0

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCC-----HH
Q 008827          123 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEK-----ED  196 (552)
Q Consensus       123 l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~-----~~  196 (552)
                      ...+..+..+.|+.||..|+..|..+.....   .    ..-.-...++.+.+ +.+||..|.+.++-...-.     .+
T Consensus       200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k---L----~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e  272 (823)
T KOG2259|consen  200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFK---L----SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE  272 (823)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhhccccc---c----cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence            3447788899999999999999988876211   1    12345567788874 5788888866555433221     11


Q ss_pred             HHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008827          197 MQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV  276 (552)
Q Consensus       197 ~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~l  276 (552)
                      ..+.-....+..++++.+.+.+  ..+|..|..+|+.+..-+++.-.+..+..++..+-+.=     ...+..-....+-
T Consensus       273 ~~e~kl~D~aF~~vC~~v~D~s--l~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr-----~ahkrpk~l~s~G  345 (823)
T KOG2259|consen  273 SEEEKLKDAAFSSVCRAVRDRS--LSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKR-----TAHKRPKALYSSG  345 (823)
T ss_pred             hhhhhhHHHHHHHHHHHHhcCc--eeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhh-----hcccchHHHHhcC
Confidence            1111122345678888888764  67888899999987654444433333322222110000     0001111112222


Q ss_pred             hccc-------------ccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhh
Q 008827          277 SRSI-------------KNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS  343 (552)
Q Consensus       277 s~~~-------------~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll  343 (552)
                      -++.             ..-... ++.+|.-..++.-|+|+-.+||.+|+.+++.|+...+...     ...+.-|+.++
T Consensus       346 ewSsGk~~~advpsee~d~~~~s-iI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDMf  419 (823)
T KOG2259|consen  346 EWSSGKEWNADVPSEEDDEEEES-IIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDMF  419 (823)
T ss_pred             CcccCccccccCchhhccccccc-cccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHh
Confidence            0000             001112 5778888899999999999999999999999998766543     24678899999


Q ss_pred             cCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchH
Q 008827          344 KSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIIL  423 (552)
Q Consensus       344 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~  423 (552)
                      .++...+|..|+.+|..++.+.       .+.+.-++.+...|.+.++++++..-.+|.+.-..+-+.+..       ++
T Consensus       420 NDE~~~VRL~ai~aL~~Is~~l-------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m-------~v  485 (823)
T KOG2259|consen  420 NDEIEVVRLKAIFALTMISVHL-------AIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDM-------CV  485 (823)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHh-------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH-------HH
Confidence            9999999999999999886532       123335778888899999999998888877764443332222       22


Q ss_pred             HHHHHHhcccCchhHHHHHHHHHHhhcCC
Q 008827          424 DAVGRQLRIASKAEIEIQGMYVLGNVATG  452 (552)
Q Consensus       424 ~~l~~~L~~~~~~~v~~~a~~~L~~la~~  452 (552)
                      ..+...|..  -|+-+.....+++.+...
T Consensus       486 ~~lL~~L~k--yPqDrd~i~~cm~~iGqn  512 (823)
T KOG2259|consen  486 AHLLKNLGK--YPQDRDEILRCMGRIGQN  512 (823)
T ss_pred             HHHHHHhhh--CCCCcHHHHHHHHHHhcc
Confidence            333333332  233444555566666543

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.39  E-value=0.00025  Score=70.22  Aligned_cols=323  Identities=14%  Similarity=0.093  Sum_probs=199.9

Q ss_pred             HHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCC--CHHHHHHHHHHHHHhhcccccccch
Q 008827          209 KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD--SSDVRSAACMCLRSVSRSIKNLSAG  286 (552)
Q Consensus       209 ~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~--~~~v~~~a~~~L~~ls~~~~~~~~~  286 (552)
                      .+..++-+++  ..+|.++.+++..+..+ +..-+.+.+.++--.++..|..+  +..=|..|.+.++.+..-.+..  .
T Consensus        29 ~i~~~lL~~~--~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~--~  103 (371)
T PF14664_consen   29 RIQCMLLSDS--KEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP--K  103 (371)
T ss_pred             HHHHHHCCCc--HHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc--c
Confidence            3333444442  77999999999998864 45556777777777777777643  4456789999999886552211  1


Q ss_pred             hhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCC
Q 008827          287 SFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAE  366 (552)
Q Consensus       287 ~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  366 (552)
                       ....+++..++.+.++++...+..|..+|+.++..++.   .+.++||+..+++.+.++...+....+.++-.+..  .
T Consensus       104 -~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd--~  177 (371)
T PF14664_consen  104 -EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD--S  177 (371)
T ss_pred             -cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC--C
Confidence             24568899999999999999999999999999986664   67789999999999887766677888888888764  4


Q ss_pred             hHhHHHHHHhhcHHHHHhhhcCC-------Ch--hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchh
Q 008827          367 DKCKEEIFMELTASLLASLICDP-------EP--SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE  437 (552)
Q Consensus       367 ~~~~~~i~~~~~~~~l~~ll~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~  437 (552)
                      |..|+.+.....++.++.-+.+.       +.  +-...+..++..+..+.+.......+. ...+.-++..|.. |+++
T Consensus       178 p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~-~~~lksLv~~L~~-p~~~  255 (371)
T PF14664_consen  178 PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND-FRGLKSLVDSLRL-PNPE  255 (371)
T ss_pred             cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC-chHHHHHHHHHcC-CCHH
Confidence            55676666555566666655433       22  244556666666666554322111111 0145666677777 7888


Q ss_pred             HHHHHHHHHHhhcCC-ChhhHHHHHHHhhHhhhhhhHHHHHHhh---cCCChhHH---HHHHHHHHhhcCCCCCCCHHHH
Q 008827          438 IEIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFL---QSNDSRLR---TAAVWAVLNLTCSSSPGSSGRL  510 (552)
Q Consensus       438 v~~~a~~~L~~la~~-~~~~~~~i~~~~~~~~~~~~v~~Lv~lL---~~~~~~~~---~~a~~~l~~l~~~~~~~~~~~~  510 (552)
                      ++...+-.+..+-.- .+...+..... ......+-+..--++-   ........   ..-...+.+..       .--.
T Consensus       256 ir~~Ildll~dllrik~p~w~~~~~~~-~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~-------aLll  327 (371)
T PF14664_consen  256 IRKAILDLLFDLLRIKPPSWTESFLAG-RRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYL-------ALLL  327 (371)
T ss_pred             HHHHHHHHHHHHHCCCCCCcccchhhc-ccccccccccchhhhcccccccccccCccccccccHHHHHH-------HHHH
Confidence            888888877776641 11111111100 0000001000000000   00000000   00001111110       0123


Q ss_pred             HHHHHCCcHHHHHhhhcCC-CccHHHHHHHHHHHHhhhcCCCC
Q 008827          511 VKLHDAGIVSHVKNMVNDP-CLDVKLRVKTALEQFNSFDDSLV  552 (552)
Q Consensus       511 ~~l~~~g~~~~L~~ll~~~-~~~v~~~a~~al~~~~~~~~~~~  552 (552)
                      ..+.+.|.++.|+++.++. +..+..+|..-|+.+..++..++
T Consensus       328 ~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~la~~lL  370 (371)
T PF14664_consen  328 AILIEAGLLEALVELIESSEDSSLSRKATLLLGELLHLASRLL  370 (371)
T ss_pred             HHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhcC
Confidence            4578999999999998765 78899999999999998887653

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.39  E-value=0.00015  Score=72.01  Aligned_cols=246  Identities=23%  Similarity=0.263  Sum_probs=170.1

Q ss_pred             cchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhh
Q 008827           36 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF  114 (552)
Q Consensus        36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~  114 (552)
                      ..++.+.+++.+++..++..++..+...-.          .-+++.+..++.+ ++.+|..|..+|+.+-.         
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~---------  103 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELGD---------  103 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---------
Confidence            578999999998888888888888555431          3357889999987 67899999998887421         


Q ss_pred             ccccCCccHHHHHHHHh-cCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCC-------------chh
Q 008827          115 VGPDTGRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG-------------RVG  180 (552)
Q Consensus       115 ~~~~~~~~l~~l~~ll~-~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~-------------~v~  180 (552)
                           ...++.++.++. +++..+|..|+..|..+..            ...++.++..++++.             .++
T Consensus       104 -----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~------------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r  166 (335)
T COG1413         104 -----PEAVPPLVELLENDENEGVRAAAARALGKLGD------------ERALDPLLEALQDEDSGSAAAALDAALLDVR  166 (335)
T ss_pred             -----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc------------hhhhHHHHHHhccchhhhhhhhccchHHHHH
Confidence                 345677888887 7999999999999987643            234777888887432             133


Q ss_pred             chHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC
Q 008827          181 DEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH  260 (552)
Q Consensus       181 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~  260 (552)
                      ..+...++.+.           +...++.+...+.+..  ..+|..+..+|+.+...+         ..+.+.+...+.+
T Consensus       167 ~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~--~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~  224 (335)
T COG1413         167 AAAAEALGELG-----------DPEAIPLLIELLEDED--ADVRRAAASALGQLGSEN---------VEAADLLVKALSD  224 (335)
T ss_pred             HHHHHHHHHcC-----------ChhhhHHHHHHHhCch--HHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcC
Confidence            33444333332           2334667777777764  578888888888887543         2356788888889


Q ss_pred             CCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHH
Q 008827          261 DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLV  340 (552)
Q Consensus       261 ~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~  340 (552)
                      +++.+|..++..+..+.            .....+.+...+.+.++.++..+...+..    ..       .......+.
T Consensus       225 ~~~~vr~~~~~~l~~~~------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~-------~~~~~~~l~  281 (335)
T COG1413         225 ESLEVRKAALLALGEIG------------DEEAVDALAKALEDEDVILALLAAAALGA----LD-------LAEAALPLL  281 (335)
T ss_pred             CCHHHHHHHHHHhcccC------------cchhHHHHHHHHhccchHHHHHHHHHhcc----cC-------chhhHHHHH
Confidence            99999999988875542            23446778888888877777666666641    10       013345555


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhc
Q 008827          341 QLSKSMDSTIRLNALRALRNLI  362 (552)
Q Consensus       341 ~ll~~~~~~v~~~a~~aL~~l~  362 (552)
                      ..+.+....++..+..++....
T Consensus       282 ~~~~~~~~~~~~~~~~~l~~~~  303 (335)
T COG1413         282 LLLIDEANAVRLEAALALGQIG  303 (335)
T ss_pred             HHhhcchhhHHHHHHHHHHhhc
Confidence            6666666677777777666553

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=0.00043  Score=76.57  Aligned_cols=289  Identities=14%  Similarity=0.099  Sum_probs=161.4

Q ss_pred             cHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccc
Q 008827          206 GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA  285 (552)
Q Consensus       206 ~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~  285 (552)
                      .||+|.++=.++  ++.++.+-......|..+.....+.. -..++.-|+.-+.+..|+||+++|.+|..|-+..+... 
T Consensus       999 LIPrLyRY~yDP--~~~Vq~aM~sIW~~Li~D~k~~vd~y-~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~- 1074 (1702)
T KOG0915|consen  999 LIPRLYRYQYDP--DKKVQDAMTSIWNALITDSKKVVDEY-LNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ- 1074 (1702)
T ss_pred             hhHHHhhhccCC--cHHHHHHHHHHHHHhccChHHHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH-
Confidence            356666643333  35555544444444444322221111 12467778888889999999999999999987743321 


Q ss_pred             hhhhc--cCcHHHHHHhhcCCCHHHHHHHH---HHHHHhhcCCc---hh-HHHHHhhCcHHHHHH--hhcCCCHHHHHHH
Q 008827          286 GSFMN--ETIVIPLVRLLDDTSTAVQVAAL---GAISNIVVDFT---TR-RSTFIRLGGVKLLVQ--LSKSMDSTIRLNA  354 (552)
Q Consensus       286 ~~~~~--~~~i~~Lv~lL~~~~~~v~~~a~---~aL~nl~~~~~---~~-~~~~~~~g~i~~L~~--ll~~~~~~v~~~a  354 (552)
                        +.+  ..++..+++.++|=...+|++|-   .+|+.++....   +. +..-+-+.++|.|+.  .+ +.-+++|..+
T Consensus      1075 --~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~s 1151 (1702)
T KOG0915|consen 1075 --VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFS 1151 (1702)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHH
Confidence              221  24445555556665667776654   45555443211   11 111111345666663  34 6678999999


Q ss_pred             HHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCC-----------hhHHHHHHHHHHHhh-cCCcc--hHHHHHhhcC
Q 008827          355 LRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE-----------PSVQEQALALVRNLV-DGRIN--SVEYIFAEDG  420 (552)
Q Consensus       355 ~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~-----------~~v~~~a~~~L~~l~-~~~~~--~~~~i~~~~~  420 (552)
                      +.++..++...+...+..+-  ..++.+.+....-+           ..+...++..+|-=. .+.|-  .++..++..+
T Consensus      1152 i~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD 1229 (1702)
T KOG0915|consen 1152 IGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYID 1229 (1702)
T ss_pred             HHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhh
Confidence            99999998765432222111  12333443333222           345555666665333 33321  1122222211


Q ss_pred             -----chHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHH
Q 008827          421 -----IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV  495 (552)
Q Consensus       421 -----~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l  495 (552)
                           .++|.+.++++++-.-..+..++..+..++..-........        ...+..+...+++.++.+++..+.+.
T Consensus      1230 ~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s--------gKll~al~~g~~dRNesv~kafAsAm 1301 (1702)
T KOG0915|consen 1230 ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS--------GKLLRALFPGAKDRNESVRKAFASAM 1301 (1702)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch--------hHHHHHHhhccccccHHHHHHHHHHH
Confidence                 15788888888765666777888877777652211111111        23445666677889999999999999


Q ss_pred             HhhcCCCCCCCHHHHHHHH
Q 008827          496 LNLTCSSSPGSSGRLVKLH  514 (552)
Q Consensus       496 ~~l~~~~~~~~~~~~~~l~  514 (552)
                      +.++..   .++++.+.+.
T Consensus      1302 G~L~k~---Ss~dq~qKLi 1317 (1702)
T KOG0915|consen 1302 GYLAKF---SSPDQMQKLI 1317 (1702)
T ss_pred             HHHHhc---CChHHHHHHH
Confidence            999852   3455666663

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.37  E-value=0.00029  Score=69.92  Aligned_cols=275  Identities=23%  Similarity=0.239  Sum_probs=185.4

Q ss_pred             ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHH
Q 008827          121 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQK  199 (552)
Q Consensus       121 ~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~  199 (552)
                      ..+..+.+++.++++.+|..|+..+..+..            .-++|.+..++.+ +..+|..|+.+|+.+-        
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------  102 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS------------EEAVPLLRELLSDEDPRVRDAAADALGELG--------  102 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch------------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--------
Confidence            467788899999999999999988665432            3588999999984 4678999988887663        


Q ss_pred             HHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCC------------HHHHH
Q 008827          200 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS------------SDVRS  267 (552)
Q Consensus       200 ~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~------------~~v~~  267 (552)
                         ....++.+++++... .+..+|..+.++|+.+..  +.         .++.++..+++..            ..+|.
T Consensus       103 ---~~~a~~~li~~l~~d-~~~~vR~~aa~aL~~~~~--~~---------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~  167 (335)
T COG1413         103 ---DPEAVPPLVELLEND-ENEGVRAAAARALGKLGD--ER---------ALDPLLEALQDEDSGSAAAALDAALLDVRA  167 (335)
T ss_pred             ---ChhHHHHHHHHHHcC-CcHhHHHHHHHHHHhcCc--hh---------hhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence               134578889988853 457899999999999752  22         2666777777655            24566


Q ss_pred             HHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCC
Q 008827          268 AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD  347 (552)
Q Consensus       268 ~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~  347 (552)
                      .+...+..+            .+...++.+...+.+++..++..|..+|+.+....         ..+.+.+...+.+++
T Consensus       168 ~a~~~l~~~------------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~  226 (335)
T COG1413         168 AAAEALGEL------------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDES  226 (335)
T ss_pred             HHHHHHHHc------------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCC
Confidence            666665443            34456788999999999999999999999877543         356678889999999


Q ss_pred             HHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHH
Q 008827          348 STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVG  427 (552)
Q Consensus       348 ~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~  427 (552)
                      ..+|..++.+|+.+-...            ....+...+.+.+..+...+...+...  ...   .        ....+.
T Consensus       227 ~~vr~~~~~~l~~~~~~~------------~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~~---~--------~~~~l~  281 (335)
T COG1413         227 LEVRKAALLALGEIGDEE------------AVDALAKALEDEDVILALLAAAALGAL--DLA---E--------AALPLL  281 (335)
T ss_pred             HHHHHHHHHHhcccCcch------------hHHHHHHHHhccchHHHHHHHHHhccc--Cch---h--------hHHHHH
Confidence            999999999998884321            355666677777776665555444311  000   0        112222


Q ss_pred             HHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHH
Q 008827          428 RQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV  495 (552)
Q Consensus       428 ~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l  495 (552)
                      ..+.+ ....++..+...++.+.....                  ...+.....+++..++..+....
T Consensus       282 ~~~~~-~~~~~~~~~~~~l~~~~~~~~------------------~~a~~~~~~~~~~~~~~~~~~~~  330 (335)
T COG1413         282 LLLID-EANAVRLEAALALGQIGQEKA------------------VAALLLALEDGDADVRKAALILL  330 (335)
T ss_pred             HHhhc-chhhHHHHHHHHHHhhcccch------------------HHHHHHHhcCCchhhHHHHHHHH
Confidence            33333 455666666666666554322                  13334445566666666655444

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=0.0016  Score=67.70  Aligned_cols=276  Identities=14%  Similarity=0.104  Sum_probs=142.1

Q ss_pred             CcHHHHHHHHHHHHHHHcCCCCCCcccccccch---HHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHH
Q 008827            6 SYMEVVDAGARSLKMIYQSKMAPKYDFLQEENM---EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRL   82 (552)
Q Consensus         6 ~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i---~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L   82 (552)
                      +++-=.+.|.+.|..+.-.-..+ +.+-..++-   -.+.+++++.+...+.....++.+++...+....     +...+
T Consensus        32 espvn~r~c~~~lskllyll~qg-e~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedvii-----vtssl  105 (865)
T KOG1078|consen   32 ESPVNPRKCRHILSKLLYLLNQG-EHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVII-----VTSSL  105 (865)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhhh-----hhHHH
Confidence            34444567777777774222222 344433443   3455667788899998888888888764443221     22344


Q ss_pred             HHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHH-HHhcCChhhHHHHHHHHHHHhhhCCCcchhhh
Q 008827           83 TSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE-IVKDRFARTRLLASLCLIVIRNASPCYLQDVG  160 (552)
Q Consensus        83 ~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~  160 (552)
                      ..-.++ ++..|.+|+++|+.+....-..  .         +...++ .+=+..+.+...|.-.=+++...+.+    .+
T Consensus       106 mkD~t~~~d~yr~~AiR~L~~I~d~~m~~--~---------iery~kqaivd~~~avSsaalvss~hll~~~~~----~v  170 (865)
T KOG1078|consen  106 MKDMTGKEDLYRAAAIRALCSIIDGTMLQ--A---------IERYMKQAIVDKNPAVSSAALVSSYHLLPISFD----VV  170 (865)
T ss_pred             HhhccCCCcchhHHHHHHHHhhcCcchhH--H---------HHHHHHhHeeccccccchHHHHHHhhhhcccHH----HH
Confidence            444444 5678889999998876432111  1         111111 22244454444443322222222111    00


Q ss_pred             hHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCC-CChhhHHHHHHHHHHhhcCC
Q 008827          161 IKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS-LHPRRFEGILLALADMCSKL  238 (552)
Q Consensus       161 ~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~-~~~~~~~~a~~aL~~l~~~~  238 (552)
                        ..+.....+-.. ++.-+|..|...|..+-..+         .-++.+++..+.... .++.-+---.+.-..+...+
T Consensus       171 --krw~neiqea~~s~~~m~QyHalglLyqirk~d---------rla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~  239 (865)
T KOG1078|consen  171 --KRWANEVQEAVNSDNIMVQYHALGLLYQIRKND---------RLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKEN  239 (865)
T ss_pred             --HHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhc
Confidence              001111111111 11234566666665553222         123445555443322 11110000111111111111


Q ss_pred             hhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008827          239 ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN  318 (552)
Q Consensus       239 ~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~n  318 (552)
                           ........+.+-.++++....|...|+.++.++....+  +.  +  ...+..|--++.++.+.+|.+|...|..
T Consensus       240 -----~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r~--l--~pavs~Lq~flssp~~~lRfaAvRtLnk  308 (865)
T KOG1078|consen  240 -----QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--RE--L--APAVSVLQLFLSSPKVALRFAAVRTLNK  308 (865)
T ss_pred             -----ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH--hh--c--chHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence                 11223467788888889999999999999988865422  11  1  2356667777888999999999999998


Q ss_pred             hhcCCc
Q 008827          319 IVVDFT  324 (552)
Q Consensus       319 l~~~~~  324 (552)
                      ++...+
T Consensus       309 vAm~~P  314 (865)
T KOG1078|consen  309 VAMKHP  314 (865)
T ss_pred             HHHhCC
Confidence            886554

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=0.00023  Score=65.79  Aligned_cols=275  Identities=16%  Similarity=0.144  Sum_probs=164.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 008827          251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF  330 (552)
Q Consensus       251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  330 (552)
                      +..+++++.+.++.||+.|..-+..++...  .+.-.-.+...++.+.+++.+.++  -..|+.++.|++... ..++.+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~--~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~~~l   79 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGRG--LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELRKKL   79 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhccccc--hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHHHHH
Confidence            445789999999999999998888886551  111101345668889999988776  778889999999654 455566


Q ss_pred             HhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHH--H---hhcHHHHHhhhcCCChh--HH-HHHHHHHH
Q 008827          331 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIF--M---ELTASLLASLICDPEPS--VQ-EQALALVR  402 (552)
Q Consensus       331 ~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~--~---~~~~~~l~~ll~~~~~~--v~-~~a~~~L~  402 (552)
                      ++. .++.++..+.++....-...+..|.|++...+. ...-..  .   ..++..++....+.+..  .. .....++.
T Consensus        80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~-~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~  157 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDE-VAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA  157 (353)
T ss_pred             HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchH-HHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence            666 788888888888777788888999999874432 221111  1   02233333333322222  11 12233444


Q ss_pred             HhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHH-HHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHH----
Q 008827          403 NLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEI-QGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCII----  477 (552)
Q Consensus       403 ~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~-~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv----  477 (552)
                      |++.... ...++....-...+.+. .+.+ .+..++. ..++.|.|++-....|-..+-+      ..+++|.+.    
T Consensus       158 nls~~~~-gR~l~~~~k~~p~~kll-~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e------~~~lLp~iLlPla  228 (353)
T KOG2973|consen  158 NLSQFEA-GRKLLLEPKRFPDQKLL-PFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDE------SINLLPAILLPLA  228 (353)
T ss_pred             HHhhhhh-hhhHhcchhhhhHhhhh-cccc-cchhhhccchHHHHHhhhccchhHHHHhcc------hHHHHHHHHhhcC
Confidence            4443211 12222222211122221 1233 4455544 5778888877544432222211      123333332    


Q ss_pred             -----------------Hhhc-----CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhh-hcCCCccHH
Q 008827          478 -----------------KFLQ-----SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNM-VNDPCLDVK  534 (552)
Q Consensus       478 -----------------~lL~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~l-l~~~~~~v~  534 (552)
                                       ++|.     .+|+.+|+.-.-+|.-|+.     +...++.++..|+.+.+.++ ...++++++
T Consensus       229 gpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-----T~~GRe~lR~kgvYpilRElhk~e~ded~~  303 (353)
T KOG2973|consen  229 GPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-----TRAGREVLRSKGVYPILRELHKWEEDEDIR  303 (353)
T ss_pred             CccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-----hhHhHHHHHhcCchHHHHHHhcCCCcHHHH
Confidence                             2332     3688999999999999994     67788999999998888887 345677887


Q ss_pred             HHHHHHHHHHhh
Q 008827          535 LRVKTALEQFNS  546 (552)
Q Consensus       535 ~~a~~al~~~~~  546 (552)
                      +.+....+.+-+
T Consensus       304 ~ace~vvq~Lv~  315 (353)
T KOG2973|consen  304 EACEQVVQMLVR  315 (353)
T ss_pred             HHHHHHHHHHHh
Confidence            776555554443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.33  E-value=2.1e-05  Score=83.18  Aligned_cols=225  Identities=18%  Similarity=0.258  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhc
Q 008827          138 RLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQK  216 (552)
Q Consensus       138 r~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~  216 (552)
                      |.-|+..|..+...++ .+.+-...-|+.|+.++||+.+ .+++..-.++=+++..-++.++.-.+..+|..-+++.|..
T Consensus       487 RlRAL~LL~RFLDlGp-WAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~  565 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGP-WAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP  565 (1387)
T ss_pred             HHHHHHHHHHHhccch-hhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence            4556666666655443 2334445569999999999955 5777777777777777778888888888887777777766


Q ss_pred             -CCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCC-CHHHHHHHHHHHHHhhcccccccchhhhccCcH
Q 008827          217 -GSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIV  294 (552)
Q Consensus       217 -~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i  294 (552)
                       +..+++.|.-++..|+.++.+-..-++...+.+++...++.|+++ .+-+|.-.|-||+.|=.+.+..+.. -.+.+..
T Consensus       566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~-G~r~~Ah  644 (1387)
T KOG1517|consen  566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS-GRRDNAH  644 (1387)
T ss_pred             cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc-cccccHH
Confidence             444568888999999999986555666777888999999999986 6888888899999996665555554 4667889


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcC----CchhHHHH------------HhhCcH---HHHHHhhcCCCHHHHHHHH
Q 008827          295 IPLVRLLDDTSTAVQVAALGAISNIVVD----FTTRRSTF------------IRLGGV---KLLVQLSKSMDSTIRLNAL  355 (552)
Q Consensus       295 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~----~~~~~~~~------------~~~g~i---~~L~~ll~~~~~~v~~~a~  355 (552)
                      +.|..+|.|+-++||.+|+.||+.+..+    +++.....            +|....   ..++.+++++.+-+|.+.+
T Consensus       645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~  724 (1387)
T KOG1517|consen  645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV  724 (1387)
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence            9999999999999999999999999875    33322111            222222   2566777888888999888


Q ss_pred             HHHHHhccc
Q 008827          356 RALRNLIFL  364 (552)
Q Consensus       356 ~aL~~l~~~  364 (552)
                      -+|..+..+
T Consensus       725 v~ls~~~~g  733 (1387)
T KOG1517|consen  725 VALSHFVVG  733 (1387)
T ss_pred             HHHHHHHHh
Confidence            888888653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.30  E-value=3.1e-05  Score=81.98  Aligned_cols=229  Identities=16%  Similarity=0.153  Sum_probs=171.3

Q ss_pred             chHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC
Q 008827          181 DEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH  260 (552)
Q Consensus       181 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~  260 (552)
                      ..|...|+.+..-.+=.-.....-|..|-.+++|+++.  .++|..-+...+.+..-++.++..+++.++...+++.|.+
T Consensus       488 lRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a--~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~  565 (1387)
T KOG1517|consen  488 LRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSA--RELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP  565 (1387)
T ss_pred             HHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccch--HhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence            45666666555444322233445677899999998875  6666666666666666678888889998888888888887


Q ss_pred             -C--CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhHHHHHhhCcH
Q 008827          261 -D--SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT-STAVQVAALGAISNIVVDFTTRRSTFIRLGGV  336 (552)
Q Consensus       261 -~--~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i  336 (552)
                       +  +++-|..|+-.|..+.++..--+.. ..+.+.+..++..|.++ .+-++.-++-+|+.|=.++...+-.=.+.++.
T Consensus       566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~a-cl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah  644 (1387)
T KOG1517|consen  566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKA-CLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH  644 (1387)
T ss_pred             cCCCCHHHHHHHHHHHHHHHcccchhHHH-hccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence             3  4588888999999999885544444 67888999999999884 78999999999999999998887666788999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcccC---ChHhHHHH------------HHhhcH---HHHHhhhcCCChhHHHHHH
Q 008827          337 KLLVQLSKSMDSTIRLNALRALRNLIFLA---EDKCKEEI------------FMELTA---SLLASLICDPEPSVQEQAL  398 (552)
Q Consensus       337 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~---~~~~~~~i------------~~~~~~---~~l~~ll~~~~~~v~~~a~  398 (552)
                      +.|+.++.++.++||..|+.||+.+..+.   .++....+            .+....   -.++.++++.++-++....
T Consensus       645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~  724 (1387)
T KOG1517|consen  645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV  724 (1387)
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence            99999999999999999999999997742   11111111            122222   3667778889999999888


Q ss_pred             HHHHHhhcCCcchH
Q 008827          399 ALVRNLVDGRINSV  412 (552)
Q Consensus       399 ~~L~~l~~~~~~~~  412 (552)
                      -+|.++..+...+.
T Consensus       725 v~ls~~~~g~~~~~  738 (1387)
T KOG1517|consen  725 VALSHFVVGYVSHL  738 (1387)
T ss_pred             HHHHHHHHhhHHHh
Confidence            88888887754433

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=0.0029  Score=59.10  Aligned_cols=337  Identities=17%  Similarity=0.150  Sum_probs=201.8

Q ss_pred             HHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcC---ChhhHH--HHHhcCchHHHHHhhcC
Q 008827           14 GARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCK---TSLEQK--LLFDAGVLKRLTSLLGG   88 (552)
Q Consensus        14 ~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~---~~~~~~--~l~~~g~i~~L~~lL~~   88 (552)
                      |+.||--++......  . +-++.++.|-.-|..++.++...++..+.++..   ++....  .++..|..+.++....+
T Consensus        63 cVscLERLfkakega--h-lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg  139 (524)
T KOG4413|consen   63 CVSCLERLFKAKEGA--H-LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG  139 (524)
T ss_pred             HHHHHHHHHhhccch--h-hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC
Confidence            455555554432211  1 123556666666777888898888887777643   333322  23467888999999887


Q ss_pred             -CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHH--HHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhH
Q 008827           89 -SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSC--IIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKL  165 (552)
Q Consensus        89 -~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~--l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~  165 (552)
                       +.+|-.+|...+..++....... .+..   ...+..  +..+.-.-+.-+|......+..+.+.++. ........|.
T Consensus       140 eddeVAkAAiesikrialfpaale-aiFe---SellDdlhlrnlaakcndiaRvRVleLIieifSiSpe-saneckkSGL  214 (524)
T KOG4413|consen  140 EDDEVAKAAIESIKRIALFPAALE-AIFE---SELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE-SANECKKSGL  214 (524)
T ss_pred             CcHHHHHHHHHHHHHHHhcHHHHH-Hhcc---cccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH-HHhHhhhhhH
Confidence             56888999999999887654442 3332   111111  22232233344555555666677665543 2344566788


Q ss_pred             HHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHH
Q 008827          166 INNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRS  243 (552)
Q Consensus       166 i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~  243 (552)
                      +..|..=++  ++.-|+..+......++..... ++...+.|.|+.+++++...+.+|--+..++...+.+-++ +...+
T Consensus       215 ldlLeaElkGteDtLVianciElvteLaeteHg-reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgk-eaimd  292 (524)
T KOG4413|consen  215 LDLLEAELKGTEDTLVIANCIELVTELAETEHG-REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGK-EAIMD  292 (524)
T ss_pred             HHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh-hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc-hHHhh
Confidence            888877776  4556777777877788754332 3445577889999999987766666566667666666432 22211


Q ss_pred             ----HHHhc--ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh----cCCCHHHHHHHH
Q 008827          244 ----RCLSL--QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL----DDTSTAVQVAAL  313 (552)
Q Consensus       244 ----~~~~~--~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL----~~~~~~v~~~a~  313 (552)
                          .+.+.  -.+....+++...++..+.+|..+++.+..+.+.-  . +....+-|..-+++    ..+...-++.+.
T Consensus       293 vseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGa--d-lllkTgppaaehllarafdqnahakqeaai  369 (524)
T KOG4413|consen  293 VSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGA--D-LLLKTGPPAAEHLLARAFDQNAHAKQEAAI  369 (524)
T ss_pred             cCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchh--H-HHhccCChHHHHHHHHHhcccccchHHHHH
Confidence                12211  13444556677789999999999999997664321  1 33333333322222    223334567777


Q ss_pred             HHHHHhhcCCch--h-----------HHHHHhh-------CcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008827          314 GAISNIVVDFTT--R-----------RSTFIRL-------GGVKLLVQLSKSMDSTIRLNALRALRNLIF  363 (552)
Q Consensus       314 ~aL~nl~~~~~~--~-----------~~~~~~~-------g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  363 (552)
                      .+|.+++.....  .           +..+.+.       .-...+...++.+.++++..++.++..++.
T Consensus       370 haLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa  439 (524)
T KOG4413|consen  370 HALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA  439 (524)
T ss_pred             HHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence            777777653211  1           1112211       234456667777788888888888888764

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=0.005  Score=63.30  Aligned_cols=293  Identities=18%  Similarity=0.178  Sum_probs=169.6

Q ss_pred             HHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHh--cCChhhHHHHHHHHHHHhhhCCCcchh
Q 008827           82 LTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVK--DRFARTRLLASLCLIVIRNASPCYLQD  158 (552)
Q Consensus        82 L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~vr~~A~~~L~~l~~~~~~~~~~  158 (552)
                      +..=|.+ ++-...-|+.|++++...  +.+.++     ...+   -+++.  +....||..|+.||..+.+..++    
T Consensus       116 iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~-----~~DI---~KlLvS~~~~~~vkqkaALclL~L~r~spD----  181 (938)
T KOG1077|consen  116 IKNDLSSRNPTFVCLALHCIANIGSR--EMAEAF-----ADDI---PKLLVSGSSMDYVKQKAALCLLRLFRKSPD----  181 (938)
T ss_pred             HHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHh-----hhhh---HHHHhCCcchHHHHHHHHHHHHHHHhcCcc----
Confidence            3333444 455667899999998643  233333     2223   35444  34557888999999999987654    


Q ss_pred             hhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCC-----------CChhhHHH
Q 008827          159 VGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS-----------LHPRRFEG  226 (552)
Q Consensus       159 ~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~-----------~~~~~~~~  226 (552)
                      .+...+....++.+|+|. -.|-..+...+..++..+++..+..+. -++..|..+.....           +.|=+...
T Consensus       182 l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK  260 (938)
T KOG1077|consen  182 LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK  260 (938)
T ss_pred             ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence            234467999999999854 456667777777777776654332211 11223322222111           12335566


Q ss_pred             HHHHHHHhhc-CChhHHHHHHhcccHHHHHHhcCCC--CHHHH-----HHHHHHHHHhhcccccccchhhhccCcHHHHH
Q 008827          227 ILLALADMCS-KLECCRSRCLSLQVLKLVVDALAHD--SSDVR-----SAACMCLRSVSRSIKNLSAGSFMNETIVIPLV  298 (552)
Q Consensus       227 a~~aL~~l~~-~~~~~~~~~~~~~~l~~lv~~L~~~--~~~v~-----~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv  298 (552)
                      .++.|...-. .++..|.+..+  .+..++...+..  +..++     -+..--..+++.+.+... .  .-...+..|-
T Consensus       261 l~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~-~--ll~~~~~~Lg  335 (938)
T KOG1077|consen  261 LLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEP-E--LLSRAVNQLG  335 (938)
T ss_pred             HHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcH-H--HHHHHHHHHH
Confidence            7777776633 23334444332  444444444421  11121     111111223332211111 1  1234566788


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhh
Q 008827          299 RLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL  377 (552)
Q Consensus       299 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~  377 (552)
                      +++.+..+.+|.-|....+.|+.. ......+-.+  .+.++..|+ ..|..+|..|+..|..+|..+   +.+.+    
T Consensus       336 ~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~---Nak~I----  405 (938)
T KOG1077|consen  336 QFLSHRETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS---NAKQI----  405 (938)
T ss_pred             HHhhcccccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh---hHHHH----
Confidence            888888899999999999999864 3333333333  677788888 678899999999999998743   33333    


Q ss_pred             cHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827          378 TASLLASLICDPEPSVQEQALALVRNLV  405 (552)
Q Consensus       378 ~~~~l~~ll~~~~~~v~~~a~~~L~~l~  405 (552)
                       +.-+++.|.+.|..+++...-=+.-++
T Consensus       406 -V~elLqYL~tAd~sireeivlKvAILa  432 (938)
T KOG1077|consen  406 -VAELLQYLETADYSIREEIVLKVAILA  432 (938)
T ss_pred             -HHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence             445677777888888877554333333

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=0.0013  Score=70.59  Aligned_cols=345  Identities=15%  Similarity=0.135  Sum_probs=197.2

Q ss_pred             cHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHHH
Q 008827          122 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQK  199 (552)
Q Consensus       122 ~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~  199 (552)
                      .+..++..++|.|..||-.|++.+..+....+..     ....++...++++.  +++..+.-++-+|+.++...--...
T Consensus       342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-----Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-----LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-----HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            4555667888999999999999999999876532     23346666666666  4456677888999988754321110


Q ss_pred             HHHHhCcHHHHHHhhhcCC------CChhhHHHHHHHHHHhhcCChh-HHHHHHhcccHHHHHHhcCCCCHHHHHHHHHH
Q 008827          200 LAFEVNGVDKLYNHLQKGS------LHPRRFEGILLALADMCSKLEC-CRSRCLSLQVLKLVVDALAHDSSDVRSAACMC  272 (552)
Q Consensus       200 ~~~~~~~i~~L~~~L~~~~------~~~~~~~~a~~aL~~l~~~~~~-~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~  272 (552)
                      ..  ...+|.+++.|....      .-..+|.+|....+++++..+. .-+.++..=.--.+...+.+.....|++|..+
T Consensus       417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA  494 (1133)
T KOG1943|consen  417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA  494 (1133)
T ss_pred             HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence            00  123455555443321      1235889998888888763322 11222222222334556668888999999998


Q ss_pred             HHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHH-hhcCCCHHHH
Q 008827          273 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQ-LSKSMDSTIR  351 (552)
Q Consensus       273 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~  351 (552)
                      +.....-.++...      | + .|+...+.-...-+.++-..++.-...++..++.+++     .++. -+.+-+..+|
T Consensus       495 lqE~VGR~~n~p~------G-i-~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~~ir  561 (1133)
T KOG1943|consen  495 LQENVGRQGNFPH------G-I-SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDVKIR  561 (1133)
T ss_pred             HHHHhccCCCCCC------c-h-hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccHHHH
Confidence            8755322122211      1 1 2333333333455566666666555555555544443     2322 2556789999


Q ss_pred             HHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcch---HHHHHhhc--C---chH
Q 008827          352 LNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS---VEYIFAED--G---IIL  423 (552)
Q Consensus       352 ~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~~i~~~~--~---~~~  423 (552)
                      +.+.++|.++....     .+......++.++....+.+...+..+.-+.+.+..+....   .....+..  +   ++-
T Consensus       562 elaa~aL~~Ls~~~-----pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~  636 (1133)
T KOG1943|consen  562 ELAAYALHKLSLTE-----PKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIP  636 (1133)
T ss_pred             HHHHHHHHHHHHhh-----HHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhcc
Confidence            99999999986532     34455567788888887888877766665555554332110   11111110  0   011


Q ss_pred             HHHHHHhcccCc-hhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          424 DAVGRQLRIASK-AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       424 ~~l~~~L~~~~~-~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      +...+.+.- +. .-++...+..+.++...........+-       .+.-..+.+.+.+++ ..|.+|.++++.+++
T Consensus       637 ~~~~~~~~r-g~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~-------e~~~~ll~~~l~~~n-~i~~~av~av~~l~s  705 (1133)
T KOG1943|consen  637 PICDRYFYR-GQGTLMRQATLKFIEQLSLSKDRLFQDFVI-------ENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS  705 (1133)
T ss_pred             HHHHHHhcc-chHHHHHHHHHHHHHHhhhccchhHHHHHH-------HHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence            111111211 11 335566777888877654432222222       345455666665666 788999999999886

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=0.014  Score=63.09  Aligned_cols=462  Identities=15%  Similarity=0.141  Sum_probs=237.3

Q ss_pred             cchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhh
Q 008827           36 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQ  113 (552)
Q Consensus        36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~  113 (552)
                      ..+..|++.+++.+..++..||+-+.....-.. ..  .-..+|...+.++..  ++.....++-+|+.++...--.-..
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp-~~--Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~  417 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP-PE--LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL  417 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc-HH--HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence            456778888888999999999999999875444 11  223456677776664  3556667888888888653111001


Q ss_pred             hccccCCccHHHHHHHH--------hcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHh--cCCCCchhchH
Q 008827          114 FVGPDTGRTLSCIIEIV--------KDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLEL--LDDPGRVGDEA  183 (552)
Q Consensus       114 ~~~~~~~~~l~~l~~ll--------~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~l--l~~~~~v~~~a  183 (552)
                      +     .+.++-+...+        .+.-..||-+|+..++.+++.......+.+. ....+.|+--  ++..-..|..|
T Consensus       418 l-----~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l-~~L~s~LL~~AlFDrevncRRAA  491 (1133)
T KOG1943|consen  418 L-----EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL-QSLASALLIVALFDREVNCRRAA  491 (1133)
T ss_pred             H-----HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH-HHHHHHHHHHHhcCchhhHhHHH
Confidence            1     23344444433        2345578999999999999866432223222 2233333222  22223456677


Q ss_pred             HHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCC-CChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHh-cCCC
Q 008827          184 SFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS-LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDA-LAHD  261 (552)
Q Consensus       184 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~-L~~~  261 (552)
                      +.++......-          |-.|.=++++...+ .....+.++-..+..--...+.++..+     +..++.- +.+=
T Consensus       492 sAAlqE~VGR~----------~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~-----f~~L~t~Kv~HW  556 (1133)
T KOG1943|consen  492 SAALQENVGRQ----------GNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV-----FNHLLTKKVCHW  556 (1133)
T ss_pred             HHHHHHHhccC----------CCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH-----HHHHHhcccccc
Confidence            76666554321          11211122222221 011223333333332222233444333     3333332 5677


Q ss_pred             CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH---HHHHh---hC-
Q 008827          262 SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR---STFIR---LG-  334 (552)
Q Consensus       262 ~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~---~~~~~---~g-  334 (552)
                      +..+|+.++++|..|+...+.     .....++|+++.....++...+.-..-+.+.++.......   ..+.+   +| 
T Consensus       557 d~~irelaa~aL~~Ls~~~pk-----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l  631 (1133)
T KOG1943|consen  557 DVKIRELAAYALHKLSLTEPK-----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGL  631 (1133)
T ss_pred             cHHHHHHHHHHHHHHHHhhHH-----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhh
Confidence            889999999999999875332     3456888999998888888888877777766654332211   00111   12 


Q ss_pred             --cHHHHHH-hhcCC-CHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc
Q 008827          335 --GVKLLVQ-LSKSM-DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN  410 (552)
Q Consensus       335 --~i~~L~~-ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~  410 (552)
                        .++.+.. ....+ ..-.+...+..+..+.... .......+.++....+.+.+++++ .++..+.++++.++..   
T Consensus       632 ~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~-~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~---  706 (1133)
T KOG1943|consen  632 LSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSK-DRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST---  706 (1133)
T ss_pred             hhhccHHHHHHhccchHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH---
Confidence              1222222 22222 1334555555666664422 223334444445555666665566 7888888998888743   


Q ss_pred             hHHHHHhhcCc---hHHHHHHHhcccCchhHHHHHHHHHHhhcCCChh-hHHHHHHHhhHhhhhhhHHHHHHhhcCC-Ch
Q 008827          411 SVEYIFAEDGI---ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES-HKEAVMDQLLLRAENKAQSCIIKFLQSN-DS  485 (552)
Q Consensus       411 ~~~~i~~~~~~---~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~-~~~~i~~~~~~~~~~~~v~~Lv~lL~~~-~~  485 (552)
                         ++..+.+.   ++......+.+..+..++.....+++++-...-. +-+.++           ...+.....+. ++
T Consensus       707 ---y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~l-----------c~~~l~~~p~d~~a  772 (1133)
T KOG1943|consen  707 ---YVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKL-----------CKLVLELLPSDAWA  772 (1133)
T ss_pred             ---HHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHH-----------HHHHhccCcccccH
Confidence               22222221   2333333444423556677666666665421110 111111           11222222233 56


Q ss_pred             hHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHCCcHHHHHhhhcCCCc----cHHHHHHHHHHHHhh
Q 008827          486 RLRTAAVWAVLNLTCSSS-PGSSGRLVKLHDAGIVSHVKNMVNDPCL----DVKLRVKTALEQFNS  546 (552)
Q Consensus       486 ~~~~~a~~~l~~l~~~~~-~~~~~~~~~l~~~g~~~~L~~ll~~~~~----~v~~~a~~al~~~~~  546 (552)
                      ..|...+.++...+-+.. ....+..+++++ -.+..+.+...|...    .||+.|..|+..+..
T Consensus       773 ~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e-~LL~~lddYttd~rGDVGswVReaAm~al~~~~~  837 (1133)
T KOG1943|consen  773 EARQQNVKALAHVCKTVTSLLFSESIEKFRE-TLLNALDDYTTDSRGDVGSWVREAAMKALSSLLD  837 (1133)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccHHHHHH-HHHHHHhhcccccCccHHHHHHHHHHHHHHhhhh
Confidence            677777777766653110 001112222211 122333333333322    477888887766543

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=0.00068  Score=62.80  Aligned_cols=270  Identities=20%  Similarity=0.227  Sum_probs=164.9

Q ss_pred             HHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHH-HHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHH
Q 008827          167 NNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKL-AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSR  244 (552)
Q Consensus       167 ~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~  244 (552)
                      ..+++++.. ++.|+..|..-+..+...  ..+.. -.+...++.+.+++....  +  .+.|+.++.+++. ++..|+.
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~--~--~~~a~~alVnlsq-~~~l~~~   78 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLD--P--AEPAATALVNLSQ-KEELRKK   78 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCcc--c--ccHHHHHHHHHHh-hHHHHHH
Confidence            346677763 567888887777766654  11111 123445778888777653  3  5788999999986 5678888


Q ss_pred             HHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchh--h---hccCcHHHHHHhhcCC-C-HHHHHHHHHHHH
Q 008827          245 CLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGS--F---MNETIVIPLVRLLDDT-S-TAVQVAALGAIS  317 (552)
Q Consensus       245 ~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~--~---~~~~~i~~Lv~lL~~~-~-~~v~~~a~~aL~  317 (552)
                      +.+. ++..++..+.++.+..-..+|.++.|+++........-  +   .+.|.+.....+++.+ + ..-..+-+..++
T Consensus        79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~  157 (353)
T KOG2973|consen   79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA  157 (353)
T ss_pred             HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence            8777 88889999999988888999999999998743221110  0   1244444444455432 2 122345566777


Q ss_pred             HhhcCCchhHHHHHhhCc--HHHHHHhhcCCCHHHHH-HHHHHHHHhcccCChHhHHHHHHhh--cHHHHH---------
Q 008827          318 NIVVDFTTRRSTFIRLGG--VKLLVQLSKSMDSTIRL-NALRALRNLIFLAEDKCKEEIFMEL--TASLLA---------  383 (552)
Q Consensus       318 nl~~~~~~~~~~~~~~g~--i~~L~~ll~~~~~~v~~-~a~~aL~~l~~~~~~~~~~~i~~~~--~~~~l~---------  383 (552)
                      |++. +...|..+.+...  ...+..+.. .+..+|. ..+.++.|.|+..  ..+..++..+  .++.|+         
T Consensus       158 nls~-~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~  233 (353)
T KOG2973|consen  158 NLSQ-FEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEEL  233 (353)
T ss_pred             HHhh-hhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCcccc
Confidence            8874 5566766665542  334444544 4455555 5778999988743  3555555421  222222         


Q ss_pred             ------------hhh-----cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHH
Q 008827          384 ------------SLI-----CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVL  446 (552)
Q Consensus       384 ------------~ll-----~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L  446 (552)
                                  +++     +.+|+.++...+.+|.-+|.... ..+++-..+  +.+++-.+=....++++++.+-...
T Consensus       234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kg--vYpilRElhk~e~ded~~~ace~vv  310 (353)
T KOG2973|consen  234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKG--VYPILRELHKWEEDEDIREACEQVV  310 (353)
T ss_pred             CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcC--chHHHHHHhcCCCcHHHHHHHHHHH
Confidence                        333     24578899999999988887643 344444444  5666644433435666666655555


Q ss_pred             HhhcC
Q 008827          447 GNVAT  451 (552)
Q Consensus       447 ~~la~  451 (552)
                      ..+..
T Consensus       311 q~Lv~  315 (353)
T KOG2973|consen  311 QMLVR  315 (353)
T ss_pred             HHHHh
Confidence            44444

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.15  E-value=0.00024  Score=76.74  Aligned_cols=281  Identities=16%  Similarity=0.138  Sum_probs=177.0

Q ss_pred             CCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCC----hhhhhhhccccCCc-c
Q 008827           49 SENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNN----PEVVSQFVGPDTGR-T  122 (552)
Q Consensus        49 ~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~----~~~~~~~~~~~~~~-~  122 (552)
                      ....+..|...|..++..-.....+  .-++|.++.++.. ..+||..|+.+|..+...-    +.....+     .+ .
T Consensus       436 ~~~tK~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF-----~eYl  508 (1431)
T KOG1240|consen  436 TIQTKLAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIF-----PEYL  508 (1431)
T ss_pred             cchhHHHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhh-----Hhhh
Confidence            4566788888888887543222222  4578999999997 4699999999998875321    1111111     22 3


Q ss_pred             HHHHHHHHhc-CChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcCCHHHHHH
Q 008827          123 LSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKL  200 (552)
Q Consensus       123 l~~l~~ll~~-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~  200 (552)
                      +|.|-.++.| ....+|.+=+.+|..++...     -.+...+.-.....++++. .+-..+        ...+.+.++.
T Consensus       509 fP~L~~l~~d~~~~~vRiayAsnla~LA~tA-----~rFle~~q~~~~~g~~n~~nset~~~--------~~~~~~~~~L  575 (1431)
T KOG1240|consen  509 FPHLNHLLNDSSAQIVRIAYASNLAQLAKTA-----YRFLELTQELRQAGMLNDPNSETAPE--------QNYNTELQAL  575 (1431)
T ss_pred             hhhhHhhhccCccceehhhHHhhHHHHHHHH-----HHHHHHHHHHHhcccccCcccccccc--------cccchHHHHH
Confidence            4556667777 77889999999999988742     2233333333333344421 110000        0011111111


Q ss_pred             HHHhCcHH-HHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcc
Q 008827          201 AFEVNGVD-KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRS  279 (552)
Q Consensus       201 ~~~~~~i~-~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~  279 (552)
                         ..++. ....+|.+++  +.++..-+..|..||..--   +.=...-++++++.+|++.++.+|-+-..-|..++.-
T Consensus       576 ---~~~V~~~v~sLlsd~~--~~Vkr~Lle~i~~LC~FFG---k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~  647 (1431)
T KOG1240|consen  576 ---HHTVEQMVSSLLSDSP--PIVKRALLESIIPLCVFFG---KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIF  647 (1431)
T ss_pred             ---HHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHhh---hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEE
Confidence               11233 3445556653  6788888888888886210   0001112799999999999999998887777666544


Q ss_pred             cccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 008827          280 IKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR  359 (552)
Q Consensus       280 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~  359 (552)
                      ...   . -+++..+|.|.+-|.|+.+.|...|.+++.-|+...--.|..+  ...++....+|-.+|..+|..++..+.
T Consensus       648 VG~---r-s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v--~~i~~~v~PlL~hPN~WIR~~~~~iI~  721 (1431)
T KOG1240|consen  648 VGW---R-SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV--KDILQDVLPLLCHPNLWIRRAVLGIIA  721 (1431)
T ss_pred             Eee---e-eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH--HHHHHhhhhheeCchHHHHHHHHHHHH
Confidence            221   1 2567888999999999999999999999998875322222222  246667777888999999999999888


Q ss_pred             Hhcc
Q 008827          360 NLIF  363 (552)
Q Consensus       360 ~l~~  363 (552)
                      ....
T Consensus       722 ~~~~  725 (1431)
T KOG1240|consen  722 AIAR  725 (1431)
T ss_pred             HHHh
Confidence            7754

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.12  E-value=6.7e-05  Score=60.43  Aligned_cols=122  Identities=16%  Similarity=0.138  Sum_probs=103.9

Q ss_pred             cCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHh
Q 008827          291 ETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC  369 (552)
Q Consensus       291 ~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~  369 (552)
                      -+++..||.=.+ ..+.+.++.....|+|++.++.++ ..+.+.++++.++.-+...|+.+.+.++..|+|+|-  ++.+
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Ny-s~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n   91 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINY-SHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTN   91 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchH-HHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHH
Confidence            456777777665 568999999999999999876554 478889999999999999999999999999999987  5678


Q ss_pred             HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 008827          370 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI  415 (552)
Q Consensus       370 ~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  415 (552)
                      .+-|.+.++++.++..+.++...+.-.++.++..++.+.......+
T Consensus        92 ~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~el  137 (173)
T KOG4646|consen   92 AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDEL  137 (173)
T ss_pred             HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHh
Confidence            9999999999999999999999999999999999987765433333

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.11  E-value=3.8e-05  Score=71.62  Aligned_cols=187  Identities=19%  Similarity=0.208  Sum_probs=119.4

Q ss_pred             CChhhHHHHHHHHHHhhcCC--hhHHHHHHhc--ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcH
Q 008827          219 LHPRRFEGILLALADMCSKL--ECCRSRCLSL--QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIV  294 (552)
Q Consensus       219 ~~~~~~~~a~~aL~~l~~~~--~~~~~~~~~~--~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i  294 (552)
                      .+...|..++..|..+...+  ......+.+.  .+++.+...+.+....+...||.++..++...+..-..  .-..++
T Consensus        19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~--~~~~~l   96 (228)
T PF12348_consen   19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEP--YADILL   96 (228)
T ss_dssp             SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHH--HHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH--HHHHHH
Confidence            56888888998888887655  2222333221  46677888888888899999999999998764443222  345788


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCc-HHHHHHhhcCCCHHHHHHHHHHHHHhcccCC---hHhH
Q 008827          295 IPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG-VKLLVQLSKSMDSTIRLNALRALRNLIFLAE---DKCK  370 (552)
Q Consensus       295 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~-i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~---~~~~  370 (552)
                      |.|++.+.++...++..|..+|..++...+...      .. .+.+.....+.++.+|..++..+..+....+   +...
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~  170 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSP------KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ  170 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence            999999999999999999999999987654111      22 5666778888999999999998888765433   2222


Q ss_pred             HHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHH
Q 008827          371 EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVE  413 (552)
Q Consensus       371 ~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  413 (552)
                      ....-....+.+...+.|++++++..|-.++..+....++...
T Consensus       171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence            2221234677888999999999999999998888655444333

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.09  E-value=0.00023  Score=76.87  Aligned_cols=287  Identities=17%  Similarity=0.095  Sum_probs=183.7

Q ss_pred             CChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcC---CHHHHHHHHHhCcHH
Q 008827          133 RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAE---KEDMQKLAFEVNGVD  208 (552)
Q Consensus       133 ~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~  208 (552)
                      .....|..|...|..++..-.    +...-..++|.++.++.++ .+||..|..+|..+...   -+.....++..=..|
T Consensus       435 k~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP  510 (1431)
T KOG1240|consen  435 KTIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFP  510 (1431)
T ss_pred             hcchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhh
Confidence            456788899999999988543    3344567999999999965 68999999888877532   111112233333457


Q ss_pred             HHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhh
Q 008827          209 KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF  288 (552)
Q Consensus       209 ~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~  288 (552)
                      .|-.++.++ ....+|-..+..|+.|+..  .  ..+.+.+.-.....++++++.+.       ......+ .. ..  -
T Consensus       511 ~L~~l~~d~-~~~~vRiayAsnla~LA~t--A--~rFle~~q~~~~~g~~n~~nset-------~~~~~~~-~~-~~--~  574 (1431)
T KOG1240|consen  511 HLNHLLNDS-SAQIVRIAYASNLAQLAKT--A--YRFLELTQELRQAGMLNDPNSET-------APEQNYN-TE-LQ--A  574 (1431)
T ss_pred             hhHhhhccC-ccceehhhHHhhHHHHHHH--H--HHHHHHHHHHHhcccccCccccc-------ccccccc-hH-HH--H
Confidence            777766664 2356777778888888741  1  22333333333334455544430       0000000 00 00  0


Q ss_pred             hccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChH
Q 008827          289 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK  368 (552)
Q Consensus       289 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~  368 (552)
                      .-.++-...+.+|.++++-|+..-...|+-|+..+...+   .+.=.++.|+.+|.+.+..+|..-...+.-++....  
T Consensus       575 L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG--  649 (1431)
T KOG1240|consen  575 LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK---SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG--  649 (1431)
T ss_pred             HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe--
Confidence            123344556778888888999988888988886554322   123477899999999988888765555544433222  


Q ss_pred             hHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHh
Q 008827          369 CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGN  448 (552)
Q Consensus       369 ~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~  448 (552)
                        .+-+++..+|.|.+-|.++++.|...|++++.-|+...--...++.+    +++....+|-+ |+.=|+..++..|..
T Consensus       650 --~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~----i~~~v~PlL~h-PN~WIR~~~~~iI~~  722 (1431)
T KOG1240|consen  650 --WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD----ILQDVLPLLCH-PNLWIRRAVLGIIAA  722 (1431)
T ss_pred             --eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH----HHHhhhhheeC-chHHHHHHHHHHHHH
Confidence              23346678899999999999999999999999998664222223333    44555555656 888899999998887


Q ss_pred             hcC
Q 008827          449 VAT  451 (552)
Q Consensus       449 la~  451 (552)
                      ++.
T Consensus       723 ~~~  725 (1431)
T KOG1240|consen  723 IAR  725 (1431)
T ss_pred             HHh
Confidence            764

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.05  E-value=2.6e-05  Score=60.45  Aligned_cols=86  Identities=24%  Similarity=0.314  Sum_probs=70.4

Q ss_pred             HHHHHHhc-CCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 008827          251 LKLVVDAL-AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST  329 (552)
Q Consensus       251 l~~lv~~L-~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~  329 (552)
                      +|.|++.| +++++.+|..++.+|+.+            .....++.|+.+++++++.+|..|+++|+.+-         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL------------GDPEAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC------------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc------------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57889988 899999999999999733            23366899999999999999999999999762         


Q ss_pred             HHhhCcHHHHHHhhcCC-CHHHHHHHHHHHH
Q 008827          330 FIRLGGVKLLVQLSKSM-DSTIRLNALRALR  359 (552)
Q Consensus       330 ~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~  359 (552)
                        ....++.|.+++.++ +..+|..|+.+|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              235889999988875 4567899998875

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.04  E-value=0.0031  Score=61.91  Aligned_cols=472  Identities=15%  Similarity=0.167  Sum_probs=229.5

Q ss_pred             cchHHHHHHHHhhcCChhhHHHHHh----------cCchHHHHHh-hcC-CHHHHHHHHHHHHHHhcCChhhhhhhcccc
Q 008827           51 NVSGLGASIISHSCKTSLEQKLLFD----------AGVLKRLTSL-LGG-SLIQRDASLESIATIFKNNPEVVSQFVGPD  118 (552)
Q Consensus        51 ~~~~~a~~~l~~~~~~~~~~~~l~~----------~g~i~~L~~l-L~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~  118 (552)
                      .++..|.-++....+.-+ |..+..          .|+-|.|+.+ |+. +++-|.-|+..+..+.+........-.++.
T Consensus        11 kvr~~al~~~~~~~~~~~-~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~   89 (728)
T KOG4535|consen   11 KVRQGALVCFLSTIKSIE-KKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTS   89 (728)
T ss_pred             HHHhhHHHHHHHHHhhhh-hhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccC
Confidence            455555555555543222 333332          3555554433 444 678888889888888766544422211111


Q ss_pred             CCcc----------HH----HH-HHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhch
Q 008827          119 TGRT----------LS----CI-IEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDE  182 (552)
Q Consensus       119 ~~~~----------l~----~l-~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~  182 (552)
                      +...          +.    .+ ..+-....+.+-....+||.++.+..+-+..+.-....+...+-++++ .++.|+..
T Consensus        90 ~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs  169 (728)
T KOG4535|consen   90 DHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVS  169 (728)
T ss_pred             CcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhH
Confidence            1111          11    11 123456667777778899999988776543333333344444455555 45667766


Q ss_pred             HHHHHHHhhcCC---HHHHHHHHHh--------------CcH------HHHHHhhhcCC---------------------
Q 008827          183 ASFAFSSLIAEK---EDMQKLAFEV--------------NGV------DKLYNHLQKGS---------------------  218 (552)
Q Consensus       183 a~~~L~~l~~~~---~~~~~~~~~~--------------~~i------~~L~~~L~~~~---------------------  218 (552)
                      +...+.-+.+..   |+.+-.+-..              +..      +.+.+ +..++                     
T Consensus       170 ~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e-~~~~~~~~~~~~~~~i~~~~~i~~~~  248 (728)
T KOG4535|consen  170 SLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEE-TSVSSPKGSSEPCWLIRLCISIVVLP  248 (728)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhh-hccCCccCCCCCcceeeeeeeeeecC
Confidence            666665554322   2221111000              000      11111 10000                     


Q ss_pred             ------------------CChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccc
Q 008827          219 ------------------LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSI  280 (552)
Q Consensus       219 ------------------~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~  280 (552)
                                        ....+|..++..|..++..-.-.+.  ....+...+...+.+..+.++..+..++..+....
T Consensus       249 ~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~--~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~l  326 (728)
T KOG4535|consen  249 KEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQA--YLMELGRVICKCMGEADPSIQLHGAKLLEELGTGL  326 (728)
T ss_pred             CccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHH
Confidence                              0011344455555555432111111  11223334444556778899999999888875431


Q ss_pred             c-----cccchhhhccCcHHHHH-----Hh-hcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhh----cC
Q 008827          281 K-----NLSAGSFMNETIVIPLV-----RL-LDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS----KS  345 (552)
Q Consensus       281 ~-----~~~~~~~~~~~~i~~Lv-----~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll----~~  345 (552)
                      .     ........+..+...+.     .. -++..+..+..+|.++.++.......    +..|--....-++    .+
T Consensus       327 v~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~----lpn~~~T~~~~Fl~GC~d~  402 (728)
T KOG4535|consen  327 IQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN----LPNDRQTLCITFLLGCNDS  402 (728)
T ss_pred             hhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC----CCCcchhhhHHHHhcccch
Confidence            1     11111011111111111     01 12234567788888888876422110    0011111111111    22


Q ss_pred             CCHHHHHHHHHHHHHhcccCChHhHH-HHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC----Ccc---hHHHHHh
Q 008827          346 MDSTIRLNALRALRNLIFLAEDKCKE-EIFMELTASLLASLICDPEPSVQEQALALVRNLVDG----RIN---SVEYIFA  417 (552)
Q Consensus       346 ~~~~v~~~a~~aL~~l~~~~~~~~~~-~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~----~~~---~~~~i~~  417 (552)
                      .+.-++..|++++.-+.-+..  .+. ...-....+.+...+.+..-..|+++.|.++|++..    -|.   ..+.+..
T Consensus       403 ~~~lv~~aA~Ra~~VyVLHp~--lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg  480 (728)
T KOG4535|consen  403 KNRLVKAAASRALGVYVLHPC--LRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG  480 (728)
T ss_pred             HHHHHHHHHHhhceeEEeccc--hhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH
Confidence            334467777777776654322  232 333445566777777888889999999999999753    221   1222211


Q ss_pred             hcCchHHHHHHH--hcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHH-HhhcCCChhHHHHHHHH
Q 008827          418 EDGIILDAVGRQ--LRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCII-KFLQSNDSRLRTAAVWA  494 (552)
Q Consensus       418 ~~~~~~~~l~~~--L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv-~lL~~~~~~~~~~a~~~  494 (552)
                      .   .+..+.+.  ..+..+.+|+..+..+|+|+..    ..+.+.+--+.....+.+..+. ..+-..+..||-+||.+
T Consensus       481 ~---ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya  553 (728)
T KOG4535|consen  481 L---LLLKMLRSAIEASADKDKVKSNAVRALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYA  553 (728)
T ss_pred             H---HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHH
Confidence            1   22222221  1223467899999999998763    1221211000000011112221 22234678999999999


Q ss_pred             HHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcC-CCccHHHHHHHHHH
Q 008827          495 VLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVND-PCLDVKLRVKTALE  542 (552)
Q Consensus       495 l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~-~~~~v~~~a~~al~  542 (552)
                      ++||..+..  .+-+-... ...+.+.|..|+.+ .+-.+|-+|+.||.
T Consensus       554 ~gNLfkn~a--~~lq~~~w-A~~~F~~L~~Lv~~~~NFKVRi~AA~aL~  599 (728)
T KOG4535|consen  554 MGNLFKNPA--LPLQTAPW-ASQAFNALTSLVTSCKNFKVRIRAAAALS  599 (728)
T ss_pred             HHHhhcCcc--ccccCCCc-hHHHHHHHHHHHHHhccceEeehhhhhhc
Confidence            999996421  10000000 11245677777754 56788888888874

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.03  E-value=1.2e-05  Score=51.97  Aligned_cols=39  Identities=36%  Similarity=0.473  Sum_probs=36.4

Q ss_pred             chhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827          324 TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI  362 (552)
Q Consensus       324 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  362 (552)
                      +++++.+++.|+++.|+++++++++.++.+|+|+|+|++
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            456788999999999999999999999999999999996

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.00031  Score=71.32  Aligned_cols=255  Identities=16%  Similarity=0.125  Sum_probs=161.9

Q ss_pred             chHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcCC-HHHHHHHHHHHHHHhcCChh------
Q 008827           37 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGS-LIQRDASLESIATIFKNNPE------  109 (552)
Q Consensus        37 ~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~~-~~v~~~al~~L~~l~~~~~~------  109 (552)
                      +...+..+..+.+..|+..|+..+-.+.....-...     .....+.++..+ ..||.+|+..+.....-.+.      
T Consensus       199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~  273 (823)
T KOG2259|consen  199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES  273 (823)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence            344466666666666666666665554432111111     234566677764 58999998887666543311      


Q ss_pred             hhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchHHHHHHH
Q 008827          110 VVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSS  189 (552)
Q Consensus       110 ~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~  189 (552)
                      ...++    ....+..+...++|....||..|++.|+.+-..+.     .++..-.=..+++-+..............++
T Consensus       274 ~e~kl----~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-----e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~  344 (823)
T KOG2259|consen  274 EEEKL----KDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-----EIIQQTLDKKLMSRLRRKRTAHKRPKALYSS  344 (823)
T ss_pred             hhhhh----HHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-----HHHHHHHHHHHhhhhhhhhhcccchHHHHhc
Confidence            01111    13567888899999999999999999998866432     2222222233333111000001111111111


Q ss_pred             h--h------------cCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHH
Q 008827          190 L--I------------AEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVV  255 (552)
Q Consensus       190 l--~------------~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv  255 (552)
                      -  +            .+++ -...++..|+--.++.-|.++.  .++|.+|+..++.|+...+....     ..+..|+
T Consensus       345 GewSsGk~~~advpsee~d~-~~~siI~sGACGA~VhGlEDEf--~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLv  416 (823)
T KOG2259|consen  345 GEWSSGKEWNADVPSEEDDE-EEESIIPSGACGALVHGLEDEF--YEVRRAAVASLCSLATSSPGFAV-----RALDFLV  416 (823)
T ss_pred             CCcccCccccccCchhhccc-cccccccccccceeeeechHHH--HHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHH
Confidence            1  0            0111 1133566777777887777763  78999999999999987665433     3588999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 008827          256 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIV  320 (552)
Q Consensus       256 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~  320 (552)
                      .+++++...||..|..+|..++.+ -      -.++..++.++..|.+.++++|++....|++.-
T Consensus       417 DMfNDE~~~VRL~ai~aL~~Is~~-l------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~  474 (823)
T KOG2259|consen  417 DMFNDEIEVVRLKAIFALTMISVH-L------AIREEQLRQILESLEDRSVDVREALRELLKNAR  474 (823)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHH-h------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            999999999999999999999877 2      234567889999999999999999999888754

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.01  E-value=0.0017  Score=64.35  Aligned_cols=238  Identities=14%  Similarity=0.084  Sum_probs=154.3

Q ss_pred             HHhHHHHHH-HhcCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChh
Q 008827          162 KTKLINNLL-ELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC  240 (552)
Q Consensus       162 ~~g~i~~Lv-~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~  240 (552)
                      .....+.+. -++.++..++..+-+++.++..+.... +.+.+.+.--.++..|........-|++|++.+..+......
T Consensus        23 ~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~  101 (371)
T PF14664_consen   23 LSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG  101 (371)
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence            344555555 355667889999999999998877665 445555544455555655544455688999888877653211


Q ss_pred             HHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 008827          241 CRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIV  320 (552)
Q Consensus       241 ~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~  320 (552)
                      .  .....|++..++...++.+...|..+..+|..++...+.+    +...|++..|++.+-++..++.+..+.++..+.
T Consensus       102 ~--~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l----v~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL  175 (371)
T PF14664_consen  102 P--KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL----VAECGGIRVLLRALIDGSFSISESLLDTLLYLL  175 (371)
T ss_pred             c--ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH----HHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence            1  1235578899999999999999999999999998875543    467899999999998877778899999999998


Q ss_pred             cCCchhHHHHHhhCcHHHHHHhhcC-------CCHH--HHHHHHHHHHHhcc-cCChHhHHHHHHhhcHHHHHhhhcCCC
Q 008827          321 VDFTTRRSTFIRLGGVKLLVQLSKS-------MDST--IRLNALRALRNLIF-LAEDKCKEEIFMELTASLLASLICDPE  390 (552)
Q Consensus       321 ~~~~~~~~~~~~~g~i~~L~~ll~~-------~~~~--v~~~a~~aL~~l~~-~~~~~~~~~i~~~~~~~~l~~ll~~~~  390 (552)
                      . .+..|+.+...--++.++.-..+       ++.+  .-..+..++..+.+ +.+- .---.-+..++..++..|..++
T Consensus       176 d-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GL-l~l~~~~~~~lksLv~~L~~p~  253 (371)
T PF14664_consen  176 D-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGL-LYLSMNDFRGLKSLVDSLRLPN  253 (371)
T ss_pred             C-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCce-eeeecCCchHHHHHHHHHcCCC
Confidence            5 45555544432233333332221       1221  22233334433322 1100 0000000135777888999999


Q ss_pred             hhHHHHHHHHHHHhhcCC
Q 008827          391 PSVQEQALALVRNLVDGR  408 (552)
Q Consensus       391 ~~v~~~a~~~L~~l~~~~  408 (552)
                      ++++...+.++..+..-.
T Consensus       254 ~~ir~~Ildll~dllrik  271 (371)
T PF14664_consen  254 PEIRKAILDLLFDLLRIK  271 (371)
T ss_pred             HHHHHHHHHHHHHHHCCC
Confidence            999999999998887654

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.00  E-value=0.013  Score=59.82  Aligned_cols=349  Identities=15%  Similarity=0.110  Sum_probs=193.6

Q ss_pred             hHHHHHhhcCCCC---cchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhhh-
Q 008827           38 MEFLLSLLNNESE---NVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVV-  111 (552)
Q Consensus        38 i~~l~~ll~~~~~---~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~-  111 (552)
                      +|.++..|.+.+.   ...+....+|..+|..+.--+.+.. ..+..+-...++  +...-...+.++..+........ 
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~   79 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ   79 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence            3667788875544   5668888999999976664332222 333444444443  33455667778877654322211 


Q ss_pred             -hhhccccCCccHHHHHHHHh-----cC--ChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC---------
Q 008827          112 -SQFVGPDTGRTLSCIIEIVK-----DR--FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD---------  174 (552)
Q Consensus       112 -~~~~~~~~~~~l~~l~~ll~-----~~--~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~---------  174 (552)
                       .......+...++.++++.-     +.  +..+-..++..+..+.+.-+...+     ...+..+.+++-         
T Consensus        80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q-----~~~~~~~~~lf~~~~~~~~~~  154 (415)
T PF12460_consen   80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQ-----QEILDELYSLFLSPKSFSPFQ  154 (415)
T ss_pred             cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHHccccccCCCC
Confidence             00000001225556665432     11  234444555655555554432222     233444444432         


Q ss_pred             -CCCc---hhch----HHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC--ChhHHHH
Q 008827          175 -DPGR---VGDE----ASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK--LECCRSR  244 (552)
Q Consensus       175 -~~~~---v~~~----a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~--~~~~~~~  244 (552)
                       +...   .+..    ...++..+-.+...   . .....+..++.+..+.. ++..+..++..++.+..+  +++.-. 
T Consensus       155 ~~~~~~~~~~~~~~~l~~~il~~l~~~~~~---~-~~~~ll~~l~~~~~~~~-~~~~~~~~~~~la~LvNK~~~~~~l~-  228 (415)
T PF12460_consen  155 PSSSTISEQQSRLVILFSAILCSLRKDVSL---P-DLEELLQSLLNLALSSE-DEFSRLAALQLLASLVNKWPDDDDLD-  228 (415)
T ss_pred             ccccccccccccHHHHHHHHHHcCCcccCc---c-CHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCCChhhHH-
Confidence             1110   1111    12233333222110   0 01124567777666553 477888889999888764  222111 


Q ss_pred             HHhcccHHHHHHhc-CCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 008827          245 CLSLQVLKLVVDAL-AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF  323 (552)
Q Consensus       245 ~~~~~~l~~lv~~L-~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~  323 (552)
                          ..+..+...+ ...+...+..+...+..+++.- -.|.. -....++..|++++.+  +++...|+.++.-+..+.
T Consensus       229 ----~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL-v~R~~-~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~  300 (415)
T PF12460_consen  229 ----EFLDSLLQSISSSEDSELRPQALEILIWITKAL-VMRGH-PLATELLDKLLELLSS--PELGQQAAKAFGILLSDS  300 (415)
T ss_pred             ----HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHH-HHcCC-chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCc
Confidence                2333333333 3334444445544444443320 01111 1223456778888876  778899999999888773


Q ss_pred             chh-------------HHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHH--hhcHHHHHhhhcC
Q 008827          324 TTR-------------RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM--ELTASLLASLICD  388 (552)
Q Consensus       324 ~~~-------------~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~--~~~~~~l~~ll~~  388 (552)
                      +..             |+.+. ...+|.|++..+..+...+.+-+.||.++..+.+.   ..+..  ...+|.+++-|..
T Consensus       301 ~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~---~vl~~~l~~LlPLLlqsL~~  376 (415)
T PF12460_consen  301 DDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPK---SVLLPELPTLLPLLLQSLSL  376 (415)
T ss_pred             HHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHHHHHhCC
Confidence            332             33333 35788888888887777899999999999886653   22222  2368889999999


Q ss_pred             CChhHHHHHHHHHHHhhcCCcc
Q 008827          389 PEPSVQEQALALVRNLVDGRIN  410 (552)
Q Consensus       389 ~~~~v~~~a~~~L~~l~~~~~~  410 (552)
                      +|++++..++.+|..+....++
T Consensus       377 ~~~~v~~s~L~tL~~~l~~~~~  398 (415)
T PF12460_consen  377 PDADVLLSSLETLKMILEEAPE  398 (415)
T ss_pred             CCHHHHHHHHHHHHHHHHcCHH
Confidence            9999999999999999877654

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.00  E-value=1.6e-05  Score=51.44  Aligned_cols=41  Identities=12%  Similarity=0.125  Sum_probs=37.9

Q ss_pred             ChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 008827          238 LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR  278 (552)
Q Consensus       238 ~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~  278 (552)
                      +++.+..+++.|++|.|+++|++++.+++..|+++|+||++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            35778899999999999999999999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.99  E-value=2.8e-05  Score=54.08  Aligned_cols=55  Identities=27%  Similarity=0.477  Sum_probs=47.2

Q ss_pred             hhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhh
Q 008827          436 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNL  498 (552)
Q Consensus       436 ~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l  498 (552)
                      |.++..++++|++++...+.......        ..+++.|..+|+++++.||.+|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~--------~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL--------PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH--------HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH--------HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            56899999999999887766555554        57889999999999999999999999975

...

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.99  E-value=0.054  Score=60.84  Aligned_cols=136  Identities=13%  Similarity=0.155  Sum_probs=89.0

Q ss_pred             CCCCcHHHHHHHHHHHHHHHcCCCCCCccc-ccccchHHHHHhhcCCCCcchHHHHHHHHhhcC-ChhhHHHHHhcCchH
Q 008827            3 LLKSYMEVVDAGARSLKMIYQSKMAPKYDF-LQEENMEFLLSLLNNESENVSGLGASIISHSCK-TSLEQKLLFDAGVLK   80 (552)
Q Consensus         3 ~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~-~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~-~~~~~~~l~~~g~i~   80 (552)
                      |.++...+.-.|++||..+...+    +.+ -.+++-..+-.-+.+.+.+|+++|...+....- .++.-...++    .
T Consensus       825 l~e~~ialRtkAlKclS~ive~D----p~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~----~  896 (1692)
T KOG1020|consen  825 LGENAIALRTKALKCLSMIVEAD----PSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYD----Q  896 (1692)
T ss_pred             hcCchHHHHHHHHHHHHHHHhcC----hHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHH----H
Confidence            45666777788899998886543    233 366666777777778889999999999986321 2221111111    1


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhC
Q 008827           81 RLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNAS  152 (552)
Q Consensus        81 ~L~~lL~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~  152 (552)
                      ..-+.+..+..||..+++.++.+|..+|+... +     ......+++-..|+...++..+...+.++=...
T Consensus       897 i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-i-----~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p  962 (1692)
T KOG1020|consen  897 IIERILDTGVSVRKRVIKILRDICEETPDFSK-I-----VDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTP  962 (1692)
T ss_pred             HHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-H-----HHHHHHHHHHhccchhHHHHHHHHHHHHHhccC
Confidence            22233344568999999999999988877642 2     234445555566777778888888888765433

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=0.0014  Score=69.86  Aligned_cols=289  Identities=13%  Similarity=0.128  Sum_probs=181.9

Q ss_pred             HHHHHHHHHHhcCChhhhhhhcccc-CCccHHHHHHHHh-cCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHH
Q 008827           94 DASLESIATIFKNNPEVVSQFVGPD-TGRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLE  171 (552)
Q Consensus        94 ~~al~~L~~l~~~~~~~~~~~~~~~-~~~~l~~l~~ll~-~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~  171 (552)
                      +.++.+|.++...+|+....+.... --+-++.++..++ ..++.++..|...+..+....++  ...++..|.+..|+.
T Consensus      1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~C--v~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKEC--VTDLATCNVLTTLLT 1820 (2235)
T ss_pred             HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHH--HHHHHhhhHHHHHHH
Confidence            4678899999888887654332100 0233455555555 68899999999998877665543  456778889999999


Q ss_pred             hcCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCC---hhHHHHHHh-
Q 008827          172 LLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL---ECCRSRCLS-  247 (552)
Q Consensus       172 ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~---~~~~~~~~~-  247 (552)
                      +|..-+..|..+..+|..|++.. ...+...++|++.-+.+++-.++ ++.+|.+++..++.+..+.   +..+-.+++ 
T Consensus      1821 lLHS~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~-~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1821 LLHSQPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTN-SDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred             HHhcChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccC-cHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence            99877888888999998888654 44566778888877777665552 4555555555555543321   111100000 


Q ss_pred             --------------------------------------------------------------------------------
Q 008827          248 --------------------------------------------------------------------------------  247 (552)
Q Consensus       248 --------------------------------------------------------------------------------  247 (552)
                                                                                                      
T Consensus      1899 LP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aV 1978 (2235)
T KOG1789|consen 1899 LPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAV 1978 (2235)
T ss_pred             chHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCccc
Confidence                                                                                            


Q ss_pred             -----------------------cccHHHHHHhcCCCCH--HHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc
Q 008827          248 -----------------------LQVLKLVVDALAHDSS--DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD  302 (552)
Q Consensus       248 -----------------------~~~l~~lv~~L~~~~~--~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~  302 (552)
                                             .+.++.+.+++...++  ..-..-..++..|-+..+++.+. +-.-|.+|.++..+.
T Consensus      1979 GG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADq-ip~LGylPK~~~Am~ 2057 (2235)
T KOG1789|consen 1979 GGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQ-LPSLGYLPKFCTAMC 2057 (2235)
T ss_pred             chhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhh-CCCccchHHHHHHHH
Confidence                                   1122222333322211  11122223344444444555544 566799999999987


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHH
Q 008827          303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL  382 (552)
Q Consensus       303 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l  382 (552)
                      ..+..+-..|...|..++.+ .-+.+.+.....+..++..++..... ---|+.+|..+......+.-.+.+..|.++.|
T Consensus      2058 ~~n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~~~~-~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyL 2135 (2235)
T KOG1789|consen 2058 LQNTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQPSL-MGLAAEALKRLMKRNTGELVAQMLKCGLVPYL 2135 (2235)
T ss_pred             hcCCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhcchH-HHHHHHHHHHHHHHhHHHHHHHHhccCcHHHH
Confidence            66666668899999999864 45566777777777788777654333 33677788777553323344556667889999


Q ss_pred             HhhhcCC
Q 008827          383 ASLICDP  389 (552)
Q Consensus       383 ~~ll~~~  389 (552)
                      +++|++.
T Consensus      2136 L~LLd~~ 2142 (2235)
T KOG1789|consen 2136 LQLLDSS 2142 (2235)
T ss_pred             HHHhccc
Confidence            9999753

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=0.011  Score=66.12  Aligned_cols=396  Identities=12%  Similarity=0.066  Sum_probs=202.3

Q ss_pred             ccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhh--h
Q 008827           35 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEV--V  111 (552)
Q Consensus        35 ~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~--~  111 (552)
                      ...||.|.+.=-+++..+|.+-..|=--+..+...-...+-....+-|+.-|.+ .++||+++.-+|..|....+..  .
T Consensus       997 ~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~ 1076 (1702)
T KOG0915|consen  997 KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVK 1076 (1702)
T ss_pred             HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHH
Confidence            356777777767888888887777665554332222222223344555555555 6899999999999998775443  1


Q ss_pred             hhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhC------CCcchhhhhHHhHHHHHHHh--cCCCCchhchH
Q 008827          112 SQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNAS------PCYLQDVGIKTKLINNLLEL--LDDPGRVGDEA  183 (552)
Q Consensus       112 ~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~------~~~~~~~~~~~g~i~~Lv~l--l~~~~~v~~~a  183 (552)
                      +.+     ......+++-.+|-...||.+|-++...+++.-      .+...-..+-..++|.|+.-  +.+-+++|..+
T Consensus      1077 e~l-----pelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~s 1151 (1702)
T KOG0915|consen 1077 EKL-----PELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFS 1151 (1702)
T ss_pred             HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHH
Confidence            111     223344455666777788988766655554321      11111112223345554431  22335788888


Q ss_pred             HHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChh----------hHHHHHHHHHH-hhcCChhHHHHHHh-----
Q 008827          184 SFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPR----------RFEGILLALAD-MCSKLECCRSRCLS-----  247 (552)
Q Consensus       184 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~----------~~~~a~~aL~~-l~~~~~~~~~~~~~-----  247 (552)
                      ..++..|+......- ..+-...+|.|++....-. +..          +...++..+.. .+...+ ..+.+-.     
T Consensus      1152 i~tl~dl~Kssg~~l-kP~~~~LIp~ll~~~s~lE-~~vLnYls~r~~~~e~ealDt~R~s~akssp-mmeTi~~ci~~i 1228 (1702)
T KOG0915|consen 1152 IGTLMDLAKSSGKEL-KPHFPKLIPLLLNAYSELE-PQVLNYLSLRLINIETEALDTLRASAAKSSP-MMETINKCINYI 1228 (1702)
T ss_pred             HHHHHHHHHhchhhh-cchhhHHHHHHHHHccccc-hHHHHHHHHhhhhhHHHHHHHHHHhhhcCCc-HHHHHHHHHHhh
Confidence            899999987655421 1222345666666443321 111          11222222221 122222 1111111     


Q ss_pred             -----cccHHHHHHhcCCC-CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 008827          248 -----LQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVV  321 (552)
Q Consensus       248 -----~~~l~~lv~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~  321 (552)
                           ...+|.+.++++.+ ....|-.++..+..|+.....-.+.  .....+..++..+++.++.++.+.+.|.+.++.
T Consensus      1229 D~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP--~sgKll~al~~g~~dRNesv~kafAsAmG~L~k 1306 (1702)
T KOG0915|consen 1229 DISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP--YSGKLLRALFPGAKDRNESVRKAFASAMGYLAK 1306 (1702)
T ss_pred             hHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc--chhHHHHHHhhccccccHHHHHHHHHHHHHHHh
Confidence                 24778888888754 4456667777777775432221111  233456666667778899999999999999986


Q ss_pred             CCch-hHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHH---hhcHHHHHhhhcCCChhHHHHH
Q 008827          322 DFTT-RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM---ELTASLLASLICDPEPSVQEQA  397 (552)
Q Consensus       322 ~~~~-~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~---~~~~~~l~~ll~~~~~~v~~~a  397 (552)
                      -..+ ..+.+     +..++..+..+.+..+..++..+.+++.+.     ..++.   ...+|.++=-....+.+.+.-=
T Consensus      1307 ~Ss~dq~qKL-----ie~~l~~~l~k~es~~siscatis~Ian~s-----~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw 1376 (1702)
T KOG0915|consen 1307 FSSPDQMQKL-----IETLLADLLGKDESLKSISCATISNIANYS-----QEMLKNYASAILPLIFLAMHEEEKANQELW 1376 (1702)
T ss_pred             cCChHHHHHH-----HHHHHHHHhccCCCccchhHHHHHHHHHhh-----HHHHHhhHHHHHHHHHHHHhHHHHHHHHHH
Confidence            5444 23333     334443332222223355566666654422     12221   1123333222222212222211


Q ss_pred             HHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCC
Q 008827          398 LALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK  453 (552)
Q Consensus       398 ~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~  453 (552)
                      -.....+..+....+.....+   ++..+.....++....++..++.++..++.+.
T Consensus      1377 ~dvW~e~vsggagtvrl~~~e---iLn~iceni~nn~~w~lr~q~Akai~~~a~~~ 1429 (1702)
T KOG0915|consen 1377 NDVWAELVSGGAGTVRLYLLE---ILNLICENITNNESWKLRKQAAKAIRVIAEGL 1429 (1702)
T ss_pred             HHHHHHhCCCCcchhhhhHHH---HHHHHHHHhccchHHHHHHHHHHHHHHHcccc
Confidence            222223333332222211111   33333333333255788888888888877644

>PF05536 Neurochondrin: Neurochondrin

Probab=97.93  E-value=0.002  Score=67.36  Aligned_cols=238  Identities=14%  Similarity=0.078  Sum_probs=156.3

Q ss_pred             cHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH---HHHHHhcccHHHHHHhcCC-------CCHHHHHHHHHHHHH
Q 008827          206 GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC---RSRCLSLQVLKLVVDALAH-------DSSDVRSAACMCLRS  275 (552)
Q Consensus       206 ~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~---~~~~~~~~~l~~lv~~L~~-------~~~~v~~~a~~~L~~  275 (552)
                      .+.+-+++|+..+  ..-|-.++..+..++..++..   ++.+.+.=+.+.+-++|++       +....+.-|...|..
T Consensus         6 ~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~   83 (543)
T PF05536_consen    6 SLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA   83 (543)
T ss_pred             HHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence            3566777788774  446788888888988765532   3457777678888888886       345677888889999


Q ss_pred             hhcccccccchhhhccCcHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHH
Q 008827          276 VSRSIKNLSAGSFMNETIVIPLVRLLDDTST-AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNA  354 (552)
Q Consensus       276 ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a  354 (552)
                      ++.. ++.... -.--+-+|.|+..+.+.+. ++...|..+|..++ ..+..++.+++.|+++.|.+.+.+ .+.....+
T Consensus        84 f~~~-~~~a~~-~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~A  159 (543)
T PF05536_consen   84 FCRD-PELASS-PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIA  159 (543)
T ss_pred             HcCC-hhhhcC-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHH
Confidence            9886 443322 1223679999999976655 99999999999999 577888899999999999999887 55668888


Q ss_pred             HHHHHHhcccCChHhH---HHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcch-HHHHHhh--cCchHHHHHH
Q 008827          355 LRALRNLIFLAEDKCK---EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS-VEYIFAE--DGIILDAVGR  428 (552)
Q Consensus       355 ~~aL~~l~~~~~~~~~---~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~--~~~~~~~l~~  428 (552)
                      +.++.+++...+.+.-   ...+ ...++.+...+.......+-..+..|.++....+.. .....+.  ...+...+..
T Consensus       160 l~lL~~Lls~~~~~~~~~~~~~l-~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~  238 (543)
T PF05536_consen  160 LNLLLNLLSRLGQKSWAEDSQLL-HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD  238 (543)
T ss_pred             HHHHHHHHHhcchhhhhhhHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence            8888888664432111   1111 123344555555555556667788888877655211 0000000  0014555666


Q ss_pred             HhcccCchhHHHHHHHHHHhhc
Q 008827          429 QLRIASKAEIEIQGMYVLGNVA  450 (552)
Q Consensus       429 ~L~~~~~~~v~~~a~~~L~~la  450 (552)
                      +|++-..++-+..++.....+.
T Consensus       239 iL~sr~~~~~R~~al~Laa~Ll  260 (543)
T PF05536_consen  239 ILQSRLTPSQRDPALNLAASLL  260 (543)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHH
Confidence            6666445556666555555444

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=0.0036  Score=64.80  Aligned_cols=319  Identities=13%  Similarity=0.145  Sum_probs=178.6

Q ss_pred             CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-C-CCchhchHHHHHHHhhcCCHHH
Q 008827          120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-D-PGRVGDEASFAFSSLIAEKEDM  197 (552)
Q Consensus       120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~-~~~v~~~a~~~L~~l~~~~~~~  197 (552)
                      +..+|.+..-+.+.++-||.+|..++..+++... +..     ..+=+.+-++|. + ++.-+.+|.-.|...   +++ 
T Consensus       133 epl~p~IracleHrhsYVRrNAilaifsIyk~~~-~L~-----pDapeLi~~fL~~e~DpsCkRNAFi~L~~~---D~E-  202 (948)
T KOG1058|consen  133 EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-HLI-----PDAPELIESFLLTEQDPSCKRNAFLMLFTT---DPE-  202 (948)
T ss_pred             hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-hhc-----CChHHHHHHHHHhccCchhHHHHHHHHHhc---CHH-
Confidence            4456777888999999999999999999887532 111     112222333443 2 222333443333322   222 


Q ss_pred             HHHHHHhCcHHHHHHhhhc-CCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008827          198 QKLAFEVNGVDKLYNHLQK-GSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV  276 (552)
Q Consensus       198 ~~~~~~~~~i~~L~~~L~~-~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~l  276 (552)
                             .++.-|...+.+ ++..+..+...+..+...|..++.-+.     ..+..+..+|.+.++.|+..|+..|..+
T Consensus       203 -------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-----~~i~~i~~lL~stssaV~fEaa~tlv~l  270 (948)
T KOG1058|consen  203 -------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-----RYIRCIYNLLSSTSSAVIFEAAGTLVTL  270 (948)
T ss_pred             -------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-----HHHHHHHHHHhcCCchhhhhhcceEEEc
Confidence                   112222222211 112344566667777777765554433     3578888999988999999999998888


Q ss_pred             hcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHH
Q 008827          277 SRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNAL  355 (552)
Q Consensus       277 s~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~  355 (552)
                      +.....+..       ....+++++. .+|..+..-...-|..+.....    .++ .|.+--+++.+.+++-++|..++
T Consensus       271 S~~p~alk~-------Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~----~il-~~l~mDvLrvLss~dldvr~Ktl  338 (948)
T KOG1058|consen  271 SNDPTALKA-------AASTYIDLLVKESDNNVKLIVLDRLSELKALHE----KIL-QGLIMDVLRVLSSPDLDVRSKTL  338 (948)
T ss_pred             cCCHHHHHH-------HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhH----HHH-HHHHHHHHHHcCcccccHHHHHH
Confidence            766332221       1233444442 2333343333333333332111    222 36667778899999999999999


Q ss_pred             HHHHHhcccCChHhHHHHHHhhcHHHHH-hhhc------CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHH
Q 008827          356 RALRNLIFLAEDKCKEEIFMELTASLLA-SLIC------DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGR  428 (552)
Q Consensus       356 ~aL~~l~~~~~~~~~~~i~~~~~~~~l~-~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~  428 (552)
                      .....+....+.   .+++.     .|. ++.+      +++.+.+.--+.++..++..-|+....       +++.++.
T Consensus       339 di~ldLvssrNv---ediv~-----~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aat-------vV~~ll~  403 (948)
T KOG1058|consen  339 DIALDLVSSRNV---EDIVQ-----FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAAT-------VVSLLLD  403 (948)
T ss_pred             HHHHhhhhhccH---HHHHH-----HHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHH-------HHHHHHH
Confidence            877777654331   11111     111 1111      223345666677777777766654443       5667777


Q ss_pred             HhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-CCChhHHHHHHHHHHhhcC
Q 008827          429 QLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       429 ~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~-~~~~~~~~~a~~~l~~l~~  500 (552)
                      .+.+ .++.-....+..+.......+..|..+++            .++.-+. =...++...|+|.++..+.
T Consensus       404 fisD-~N~~aas~vl~FvrE~iek~p~Lr~~ii~------------~l~~~~~~irS~ki~rgalwi~GeYce  463 (948)
T KOG1058|consen  404 FISD-SNEAAASDVLMFVREAIEKFPNLRASIIE------------KLLETFPQIRSSKICRGALWILGEYCE  463 (948)
T ss_pred             Hhcc-CCHHHHHHHHHHHHHHHHhCchHHHHHHH------------HHHHhhhhhcccccchhHHHHHHHHHh
Confidence            7766 55554444555555444455555655554            2222221 1345678889999998885

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=97.91  E-value=0.00016  Score=58.34  Aligned_cols=136  Identities=15%  Similarity=0.073  Sum_probs=107.8

Q ss_pred             cHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccc
Q 008827          206 GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA  285 (552)
Q Consensus       206 ~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~  285 (552)
                      -+..|++-++.. .+.+.+++.+--|++.+- +|.+..-+.+.+++..++..|..++..+..-+.+.|+|++-...+.. 
T Consensus        17 Ylq~LV~efq~t-t~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~-   93 (173)
T KOG4646|consen   17 YLQHLVDEFQTT-TNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK-   93 (173)
T ss_pred             HHHHHHHHHHHh-ccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH-
Confidence            356677666665 356778888888888885 56777888899999999999999999999999999999987744332 


Q ss_pred             hhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC
Q 008827          286 GSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS  345 (552)
Q Consensus       286 ~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~  345 (552)
                      - +.+++++|..+..+.++...+...|+.++..+.......+..+....++..+.++-.+
T Consensus        94 ~-I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s  152 (173)
T KOG4646|consen   94 F-IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRES  152 (173)
T ss_pred             H-HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHH
Confidence            2 6889999999999999999999999999999887766666666655555555555433

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.87  E-value=4e-05  Score=59.38  Aligned_cols=87  Identities=24%  Similarity=0.253  Sum_probs=70.1

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHH
Q 008827          336 VKLLVQLS-KSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEY  414 (552)
Q Consensus       336 i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  414 (552)
                      ++.|++.+ +++++.+|..++++|+.+..            ...++.+.++++++++.++..++++|+.+-.  ++    
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--~~----   62 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIGD--PE----   62 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--HH----
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--HH----
Confidence            57888888 78899999999999995521            1358899999999999999999999998742  11    


Q ss_pred             HHhhcCchHHHHHHHhcccCchhHHHHHHHHHH
Q 008827          415 IFAEDGIILDAVGRQLRIASKAEIEIQGMYVLG  447 (552)
Q Consensus       415 i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~  447 (552)
                             .++.|.+.+.++++..++..++.+|+
T Consensus        63 -------~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   63 -------AIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -------THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                   67888888888566778999988875

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=0.0044  Score=64.13  Aligned_cols=348  Identities=16%  Similarity=0.157  Sum_probs=203.4

Q ss_pred             HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcH
Q 008827          129 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGV  207 (552)
Q Consensus       129 ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i  207 (552)
                      -++|++..+|-...++|+.+-        +...-...+|.+...|. ..+.||..|..++..+-......     -.++-
T Consensus       107 DLQHPNEyiRG~TLRFLckLk--------E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L-----~pDap  173 (948)
T KOG1058|consen  107 DLQHPNEYIRGSTLRFLCKLK--------EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHL-----IPDAP  173 (948)
T ss_pred             hccCchHhhcchhhhhhhhcC--------cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhh-----cCChH
Confidence            567899999988888877552        22334567787777787 45789999887776654332111     11222


Q ss_pred             HHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchh
Q 008827          208 DKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGS  287 (552)
Q Consensus       208 ~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~  287 (552)
                      +.+-++|... .+|..+.+|+..|...-   ++..     ...+...+.-..+-++.++...+..|+..+...+.     
T Consensus       174 eLi~~fL~~e-~DpsCkRNAFi~L~~~D---~ErA-----l~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~-----  239 (948)
T KOG1058|consen  174 ELIESFLLTE-QDPSCKRNAFLMLFTTD---PERA-----LNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA-----  239 (948)
T ss_pred             HHHHHHHHhc-cCchhHHHHHHHHHhcC---HHHH-----HHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH-----
Confidence            3333455554 46778888877766542   2211     01122222333344577788888888877764222     


Q ss_pred             hhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCC
Q 008827          288 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAE  366 (552)
Q Consensus       288 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~  366 (552)
                       ....++..+..+|+++++.++.+|+++|.++..+....+      -+...+++++-. ++-.++.-.+.-|..+.    
T Consensus       240 -~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk------~Aa~~~i~l~~kesdnnvklIvldrl~~l~----  308 (948)
T KOG1058|consen  240 -EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALK------AAASTYIDLLVKESDNNVKLIVLDRLSELK----  308 (948)
T ss_pred             -HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHH------HHHHHHHHHHHhccCcchhhhhHHHHHHHh----
Confidence             345778999999999999999999999999886554333      234455555443 33334433333333332    


Q ss_pred             hHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHh-cc-----cCchhHHH
Q 008827          367 DKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL-RI-----ASKAEIEI  440 (552)
Q Consensus       367 ~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L-~~-----~~~~~v~~  440 (552)
                       ...+.+++... --++++|.++|-+++.+++.+.-.+..+.+  ++.       ++..|.+=+ .+     ..+.+-+.
T Consensus       309 -~~~~~il~~l~-mDvLrvLss~dldvr~Ktldi~ldLvssrN--ved-------iv~~Lkke~~kT~~~e~d~~~~yRq  377 (948)
T KOG1058|consen  309 -ALHEKILQGLI-MDVLRVLSSPDLDVRSKTLDIALDLVSSRN--VED-------IVQFLKKEVMKTHNEESDDNGKYRQ  377 (948)
T ss_pred             -hhhHHHHHHHH-HHHHHHcCcccccHHHHHHHHHHhhhhhcc--HHH-------HHHHHHHHHHhccccccccchHHHH
Confidence             12334444433 346788899999999999999888876643  222       223333222 11     12334566


Q ss_pred             HHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHH
Q 008827          441 QGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVS  520 (552)
Q Consensus       441 ~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~  520 (552)
                      .-..++-.++...++..            ..+++.|++++.+.|+..-......+.....        ..-.| ...+++
T Consensus       378 lLiktih~cav~Fp~~a------------atvV~~ll~fisD~N~~aas~vl~FvrE~ie--------k~p~L-r~~ii~  436 (948)
T KOG1058|consen  378 LLIKTIHACAVKFPEVA------------ATVVSLLLDFISDSNEAAASDVLMFVREAIE--------KFPNL-RASIIE  436 (948)
T ss_pred             HHHHHHHHHhhcChHHH------------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHH--------hCchH-HHHHHH
Confidence            66777777777666432            4567899999999987554444444443331        11111 223455


Q ss_pred             HHHhhhc-CCCccHHHHHHHHHHHHhh
Q 008827          521 HVKNMVN-DPCLDVKLRVKTALEQFNS  546 (552)
Q Consensus       521 ~L~~ll~-~~~~~v~~~a~~al~~~~~  546 (552)
                      .|++-+. =++...-+-|.|.++...+
T Consensus       437 ~l~~~~~~irS~ki~rgalwi~GeYce  463 (948)
T KOG1058|consen  437 KLLETFPQIRSSKICRGALWILGEYCE  463 (948)
T ss_pred             HHHHhhhhhcccccchhHHHHHHHHHh
Confidence            5555331 1234444566677665543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.83  E-value=0.00052  Score=63.92  Aligned_cols=180  Identities=14%  Similarity=0.178  Sum_probs=113.5

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCC--chhHHHHHh--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhh
Q 008827          302 DDTSTAVQVAALGAISNIVVDF--TTRRSTFIR--LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL  377 (552)
Q Consensus       302 ~~~~~~v~~~a~~aL~nl~~~~--~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~  377 (552)
                      .+.+++.|..|..-|..++.+.  ......+.+  ...+..+...+.+....+...|+.++..++........  -.-..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~--~~~~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE--PYADI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH--HHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH--HHHHH
Confidence            5679999999999999988755  222222222  14556777777777788899999999988764432222  22345


Q ss_pred             cHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCCh---
Q 008827          378 TASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE---  454 (552)
Q Consensus       378 ~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~---  454 (552)
                      .++.|++.+.++..-+++.|..+|..++...+. ...+      +.+.+.....+ +++.++..++..+..+....+   
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~-~~~~------~~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~~~~~  166 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSY-SPKI------LLEILSQGLKS-KNPQVREECAEWLAIILEKWGSDS  166 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---HH------HHHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc-HHHH------HHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHccchH
Confidence            688899999999999999999999999876540 0111      14455555555 899999999998888876433   


Q ss_pred             hhHH--HHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          455 SHKE--AVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       455 ~~~~--~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                      ....  ..+        ..+++.+...+.++++++|..|-.++..+.
T Consensus       167 ~~l~~~~~~--------~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~  205 (228)
T PF12348_consen  167 SVLQKSAFL--------KQLVKALVKLLSDADPEVREAARECLWALY  205 (228)
T ss_dssp             GGG--HHHH--------HHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred             hhhcccchH--------HHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence            1111  111        356788999999999999999998888886

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.80  E-value=0.0023  Score=58.12  Aligned_cols=194  Identities=20%  Similarity=0.184  Sum_probs=114.6

Q ss_pred             ccCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccC--
Q 008827          290 NETIVIPLVRLLDD--TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLA--  365 (552)
Q Consensus       290 ~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--  365 (552)
                      +...+|.|+..|.+  ..|-+|..|..+|+.+-.           .+.++.+-++.+++...+++.+..|+..+-...  
T Consensus        65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~  133 (289)
T KOG0567|consen   65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDII  133 (289)
T ss_pred             cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence            34566777777754  356666777777766541           133455555555555666665555555542110  


Q ss_pred             ------------ChHhHHHHHHhhcHHHHHhhhcCC-Ch-hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhc
Q 008827          366 ------------EDKCKEEIFMELTASLLASLICDP-EP-SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLR  431 (552)
Q Consensus       366 ------------~~~~~~~i~~~~~~~~l~~ll~~~-~~-~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~  431 (552)
                                  +|.-.   .....+..+-..+.+. .+ --+..++-.|+|+-.  .+           .+..+...+.
T Consensus       134 ~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--Ee-----------aI~al~~~l~  197 (289)
T KOG0567|consen  134 DKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--EE-----------AINALIDGLA  197 (289)
T ss_pred             ccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--HH-----------HHHHHHHhcc
Confidence                        00000   0011122232222222 22 234456666666632  11           3445555555


Q ss_pred             ccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC--CChhHHHHHHHHHHhhcCCCCCCCHHH
Q 008827          432 IASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS--NDSRLRTAAVWAVLNLTCSSSPGSSGR  509 (552)
Q Consensus       432 ~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~  509 (552)
                      . .+.-.+..++++++++-..                  ..+|.|.+.|.+  .++.||..|+.+|+.++.         
T Consensus       198 ~-~SalfrhEvAfVfGQl~s~------------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---------  249 (289)
T KOG0567|consen  198 D-DSALFRHEVAFVFGQLQSP------------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD---------  249 (289)
T ss_pred             c-chHHHHHHHHHHHhhccch------------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---------
Confidence            5 4666788899999887542                  223666666654  568899999999999983         


Q ss_pred             HHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHH
Q 008827          510 LVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF  544 (552)
Q Consensus       510 ~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~  544 (552)
                            ...++.|.+.+.|+.+-|++.+..||..+
T Consensus       250 ------e~~~~vL~e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  250 ------EDCVEVLKEYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             ------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence                  12477889999999999999998888654

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=0.013  Score=57.16  Aligned_cols=220  Identities=13%  Similarity=0.131  Sum_probs=157.9

Q ss_pred             CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCC--------cchhhhhHHhHHHHHHHhcCC-CCch------hchHH
Q 008827          120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC--------YLQDVGIKTKLINNLLELLDD-PGRV------GDEAS  184 (552)
Q Consensus       120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~--------~~~~~~~~~g~i~~Lv~ll~~-~~~v------~~~a~  184 (552)
                      .+++++++.++.+++.++-.+.+..|..+...+..        ...+..++.++++.|++-+.. +..+      ...+.
T Consensus       124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L  203 (536)
T KOG2734|consen  124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL  203 (536)
T ss_pred             hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence            57889999999999999999999999998764411        134667788999999998861 1122      34556


Q ss_pred             HHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC----C
Q 008827          185 FAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA----H  260 (552)
Q Consensus       185 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~----~  260 (552)
                      ..+.|+..-.+.....+++.|.+..|++-+.........+..|...++-+..++.+.+...-...++..+++-+.    +
T Consensus       204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~  283 (536)
T KOG2734|consen  204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH  283 (536)
T ss_pred             HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence            778899988888888889888888888755544223345677888888777776667777878888888888774    2


Q ss_pred             C-----CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc--hhHHHHHhh
Q 008827          261 D-----SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT--TRRSTFIRL  333 (552)
Q Consensus       261 ~-----~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~--~~~~~~~~~  333 (552)
                      +     ..+....-..+|+.+-.... .+.. |....+++...-+++. ..-.+..|..+|-.+..++.  ++...+++.
T Consensus       284 dP~~~~E~EmmeNLFdcLCs~lm~~~-nr~~-Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~  360 (536)
T KOG2734|consen  284 DPATVDEEEMMENLFDCLCSLLMAPA-NRER-FLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEI  360 (536)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhcChh-hhhh-hhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            2     23556666677777766533 3334 7777777766555655 45567888899988887765  556677777


Q ss_pred             CcHHHHHHh
Q 008827          334 GGVKLLVQL  342 (552)
Q Consensus       334 g~i~~L~~l  342 (552)
                      +++..+..+
T Consensus       361 lGLrtiF~~  369 (536)
T KOG2734|consen  361 LGLRTIFPL  369 (536)
T ss_pred             HhHHHHHHH
Confidence            777777754

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.66  E-value=0.015  Score=58.48  Aligned_cols=285  Identities=16%  Similarity=0.105  Sum_probs=134.9

Q ss_pred             HHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccc
Q 008827           39 EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGP  117 (552)
Q Consensus        39 ~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~  117 (552)
                      |.|-+-|++..+++...++..+..++..+-....  -...+..|-.+|++ ....|..|++.|..++.-.|.... .+  
T Consensus       267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~--~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~-vc--  341 (898)
T COG5240         267 PFLNSWLSDKFEMVFLEAARAVCALSEENVGSQF--VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS-VC--  341 (898)
T ss_pred             HHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHH--HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee-ec--
Confidence            4444555567788888888887776543211111  12346667777776 456789999999999876655421 11  


Q ss_pred             cCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcCCHH
Q 008827          118 DTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKED  196 (552)
Q Consensus       118 ~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~  196 (552)
                           -+.+-.++.|.+..+-..|...   +.+.+.+...+..  -..||.++.=++++ .-+-.+|.+.|+.+.   |.
T Consensus       342 -----N~evEsLIsd~Nr~IstyAITt---LLKTGt~e~idrL--v~~I~sfvhD~SD~FKiI~ida~rsLsl~F---p~  408 (898)
T COG5240         342 -----NKEVESLISDENRTISTYAITT---LLKTGTEETIDRL--VNLIPSFVHDMSDGFKIIAIDALRSLSLLF---PS  408 (898)
T ss_pred             -----ChhHHHHhhcccccchHHHHHH---HHHcCchhhHHHH--HHHHHHHHHhhccCceEEeHHHHHHHHhhC---cH
Confidence                 1233446666666655544443   4444443333222  23344444433332 223344444444332   22


Q ss_pred             HHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008827          197 MQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV  276 (552)
Q Consensus       197 ~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~l  276 (552)
                      -+..     .+..|.+.|.+. -..+.+..++.+|.......|+.+.+.     +..|-.++.+..  --+-++..|+.|
T Consensus       409 k~~s-----~l~FL~~~L~~e-Gg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDce--y~~I~vrIL~iL  475 (898)
T COG5240         409 KKLS-----YLDFLGSSLLQE-GGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDCE--YHQITVRILGIL  475 (898)
T ss_pred             HHHH-----HHHHHHHHHHhc-ccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhcc--hhHHHHHHHHHh
Confidence            1111     133444433332 123455556666665555555544433     333444443221  112234444444


Q ss_pred             hcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHH
Q 008827          277 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR  356 (552)
Q Consensus       277 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~  356 (552)
                      .+..+....    -..++..+..-+-=++.-+|.+|+.||..++.+-.+   .+....+...|-+.+.+.+.++|..|..
T Consensus       476 G~EgP~a~~----P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf  548 (898)
T COG5240         476 GREGPRAKT----PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASF  548 (898)
T ss_pred             cccCCCCCC----cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHH
Confidence            443221111    112223333322223445666666666555433221   1122223334445555566666666666


Q ss_pred             HHHHh
Q 008827          357 ALRNL  361 (552)
Q Consensus       357 aL~~l  361 (552)
                      +|.++
T Consensus       549 ~l~~~  553 (898)
T COG5240         549 LLRNM  553 (898)
T ss_pred             HHHhh
Confidence            66655

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.66  E-value=0.00012  Score=50.88  Aligned_cols=55  Identities=24%  Similarity=0.167  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008827          306 TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL  361 (552)
Q Consensus       306 ~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l  361 (552)
                      |.+|..|+++|++++...+...+. ....+++.|..++.++++.||.+|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            578999999999988766554433 4468999999999999999999999999875

...

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.57  E-value=0.0037  Score=52.97  Aligned_cols=132  Identities=13%  Similarity=0.200  Sum_probs=105.3

Q ss_pred             HHHHhcccHHHHHHhcCCCC------HHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC--CCHHHHHHHHH
Q 008827          243 SRCLSLQVLKLVVDALAHDS------SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD--TSTAVQVAALG  314 (552)
Q Consensus       243 ~~~~~~~~l~~lv~~L~~~~------~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~~  314 (552)
                      ..+...+|++.|+++++++.      .+....+..++..|-.+ +...+. .....++..++.++..  .++.+...|..
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeH-g~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEH-GIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhc-CcCchh-hccHHHHHHHHHHHccccccchHHHHHHH
Confidence            45778899999999998766      36667777888888776 555666 7788899999999974  37899999999


Q ss_pred             HHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHh
Q 008827          315 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME  376 (552)
Q Consensus       315 aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~  376 (552)
                      .|-+++..++.....+.+.=-++.|+..++.+++.++.+++..+..+....+++.|+++.+.
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~  144 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAET  144 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            99999987766566666667889999999999999999999888888776665555555443

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.55  E-value=0.074  Score=54.32  Aligned_cols=187  Identities=14%  Similarity=0.157  Sum_probs=115.6

Q ss_pred             CcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhh-cCCCHHHHHH----HHHHHHHhcccC
Q 008827          292 TIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS-KSMDSTIRLN----ALRALRNLIFLA  365 (552)
Q Consensus       292 ~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~----a~~aL~~l~~~~  365 (552)
                      .++..++.+.. .+++..+..++..++-++.-.+...  .. ...+..+.... ...+...+..    .+|....+....
T Consensus       189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~  265 (415)
T PF12460_consen  189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DL-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG  265 (415)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence            36677777764 4568889999999988876432211  11 12333333333 2233333444    344444443322


Q ss_pred             ChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcch--------H-----HHHHhhcCchHHHHHHHhcc
Q 008827          366 EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS--------V-----EYIFAEDGIILDAVGRQLRI  432 (552)
Q Consensus       366 ~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--------~-----~~i~~~~~~~~~~l~~~L~~  432 (552)
                      ++.      .....+.+++++.+  +++...+...+.-+....++.        +     +.+|..   +++.+++..+.
T Consensus       266 ~~~------~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~---~~p~L~~~~~~  334 (415)
T PF12460_consen  266 HPL------ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ---VLPKLLEGFKE  334 (415)
T ss_pred             Cch------HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH---HHHHHHHHHhh
Confidence            221      12345667777876  566777777777776552221        1     222322   56777766666


Q ss_pred             cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          433 ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       433 ~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                       .+.+++...+.+|.++..+-|.  ..+..+     -..++|.|++.|..+|.+++..+..++..+..
T Consensus       335 -~~~~~k~~yL~ALs~ll~~vP~--~vl~~~-----l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~  394 (415)
T PF12460_consen  335 -ADDEIKSNYLTALSHLLKNVPK--SVLLPE-----LPTLLPLLLQSLSLPDADVLLSSLETLKMILE  394 (415)
T ss_pred             -cChhhHHHHHHHHHHHHhhCCH--HHHHHH-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence             4555888889999999987663  223331     25788999999999999999999999999985

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.52  E-value=0.013  Score=53.47  Aligned_cols=196  Identities=17%  Similarity=0.173  Sum_probs=114.9

Q ss_pred             cHHHHHHhcCCC--CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 008827          250 VLKLVVDALAHD--SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR  327 (552)
Q Consensus       250 ~l~~lv~~L~~~--~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~  327 (552)
                      .+|.++..+.+.  .+.||..|..+|..+.            .....+.+-++.+++..++++.+-.|+..+-......+
T Consensus        68 Av~~l~~vl~desq~pmvRhEAaealga~~------------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~  135 (289)
T KOG0567|consen   68 AVPVLVEVLLDESQEPMVRHEAAEALGAIG------------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDK  135 (289)
T ss_pred             hhHHHHHHhcccccchHHHHHHHHHHHhhc------------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccc
Confidence            466677666643  4566777777775543            12334555555566666666666666655432111000


Q ss_pred             ----HHH--------HhhCcHHHHHHhhcCCC-HH-HHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhH
Q 008827          328 ----STF--------IRLGGVKLLVQLSKSMD-ST-IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSV  393 (552)
Q Consensus       328 ----~~~--------~~~g~i~~L~~ll~~~~-~~-v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v  393 (552)
                          ..+        ...+-+..+-..+.+.+ +. -|..|.+.|.|+-.  +          ..+..+.+-+..++.-.
T Consensus       136 ~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E----------eaI~al~~~l~~~Salf  203 (289)
T KOG0567|consen  136 IANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E----------EAINALIDGLADDSALF  203 (289)
T ss_pred             ccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H----------HHHHHHHHhcccchHHH
Confidence                000        01122444444333332 22 34567777777732  1          13445555566666667


Q ss_pred             HHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhh
Q 008827          394 QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKA  472 (552)
Q Consensus       394 ~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~-~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~  472 (552)
                      +-.+...++.+-...             .++.|.+.|.. ..++.|+..|+.+|+.++.  +                ..
T Consensus       204 rhEvAfVfGQl~s~~-------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e----------------~~  252 (289)
T KOG0567|consen  204 RHEVAFVFGQLQSPA-------------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD--E----------------DC  252 (289)
T ss_pred             HHHHHHHHhhccchh-------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--H----------------HH
Confidence            777777776664321             45555555543 3678999999999999875  2                22


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          473 QSCIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       473 v~~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      ++.|.+++.+..+-+++.|..++..+-+
T Consensus       253 ~~vL~e~~~D~~~vv~esc~valdm~ey  280 (289)
T KOG0567|consen  253 VEVLKEYLGDEERVVRESCEVALDMLEY  280 (289)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence            3567888889999999999988877664

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.46  E-value=0.0063  Score=64.59  Aligned_cols=167  Identities=13%  Similarity=0.163  Sum_probs=122.3

Q ss_pred             hcCCCHHHHHHHHH-HHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc
Q 008827          343 SKSMDSTIRLNALR-ALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI  421 (552)
Q Consensus       343 l~~~~~~v~~~a~~-aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~  421 (552)
                      +.+.+...|..|+. ++..|..+.+       +. ...+-+++.+.+.|.+++.-.-.-+.+.+..+|+.  .++     
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d-------ms-sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL-----   92 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED-------MS-SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL-----   92 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC-------hH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH-----
Confidence            56666666777665 6677766543       11 13455556666888888888888888888888732  222     


Q ss_pred             hHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCC
Q 008827          422 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS  501 (552)
Q Consensus       422 ~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~  501 (552)
                      +++.+.+=+++ +|+.+|..|+..++.+=.      ..++        ..+++.+.+++.++++.||+.|+.++.++-.-
T Consensus        93 avNti~kDl~d-~N~~iR~~AlR~ls~l~~------~el~--------~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l  157 (757)
T COG5096          93 AVNTIQKDLQD-PNEEIRGFALRTLSLLRV------KELL--------GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL  157 (757)
T ss_pred             HHHHHHhhccC-CCHHHHHHHHHHHHhcCh------HHHH--------HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence            45666666777 999999999999987642      2344        35668999999999999999999999998731


Q ss_pred             CCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhh
Q 008827          502 SSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  546 (552)
Q Consensus       502 ~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~  546 (552)
                          .   .....+.|.+..+..++.|++|.|...|..+|..+-.
T Consensus       158 ----d---~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         158 ----D---KDLYHELGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             ----C---HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence                1   2345577889999999999999999998888876644

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.43  E-value=0.012  Score=52.35  Aligned_cols=93  Identities=17%  Similarity=0.268  Sum_probs=73.4

Q ss_pred             ChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHH
Q 008827          220 HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR  299 (552)
Q Consensus       220 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~  299 (552)
                      +|.+|.+++.+++.++..-+..-     ...+|.+...|+++++.||+.|..+|..|... +...    ....++..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik----~k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIK----VKGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-Ccee----ehhhhhHHHHH
Confidence            36789999999999987444332     24689999999999999999999999999765 2222    12233377888


Q ss_pred             hhcCCCHHHHHHHHHHHHHhhcC
Q 008827          300 LLDDTSTAVQVAALGAISNIVVD  322 (552)
Q Consensus       300 lL~~~~~~v~~~a~~aL~nl~~~  322 (552)
                      .+.|++++++..|...+..+...
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHh
Confidence            88999999999999999998864

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.41  E-value=0.022  Score=58.33  Aligned_cols=239  Identities=17%  Similarity=0.166  Sum_probs=151.5

Q ss_pred             CCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhhcCCchhHHHHHhh
Q 008827          259 AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT-----STAVQVAALGAISNIVVDFTTRRSTFIRL  333 (552)
Q Consensus       259 ~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-----~~~v~~~a~~aL~nl~~~~~~~~~~~~~~  333 (552)
                      ...++.+...|.+||.|+-...+..|+. +.+.|+.+.++..|+..     ++++.......|.-++......+..+++.
T Consensus        42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~-~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e  120 (446)
T PF10165_consen   42 ESPDPDVSREALKCLCNALFLSPSARQI-FVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE  120 (446)
T ss_pred             cCCChHHHHHHHHHHHHHHhCCHHHHHH-HHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence            3567899999999999998887777766 89999999999999754     78899999988887777666666666554


Q ss_pred             -CcHHHHHHhhcC-----------------CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc--------
Q 008827          334 -GGVKLLVQLSKS-----------------MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--------  387 (552)
Q Consensus       334 -g~i~~L~~ll~~-----------------~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~--------  387 (552)
                       +++..+...+..                 .+...-..++..+.|+.........  -.....++.++.++.        
T Consensus       121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~--~~~~~~~~~l~~il~~~l~~~~~  198 (446)
T PF10165_consen  121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP--EEFSPSIPHLVSILRRLLPPPPS  198 (446)
T ss_pred             hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc--hhhhHHHHHHHHHHHHHhccCCC
Confidence             677776665421                 1233455688888888764332111  012222333333321        


Q ss_pred             -CCChhHHHHHHHHHHHhhcCCcch-------HHHHHhhcC--chHHHHHHHhc----ccC---chhHHHHHHHHHHhhc
Q 008827          388 -DPEPSVQEQALALVRNLVDGRINS-------VEYIFAEDG--IILDAVGRQLR----IAS---KAEIEIQGMYVLGNVA  450 (552)
Q Consensus       388 -~~~~~v~~~a~~~L~~l~~~~~~~-------~~~i~~~~~--~~~~~l~~~L~----~~~---~~~v~~~a~~~L~~la  450 (552)
                       .+.......++.+|.|+-....+.       ...+...+.  .++..++.+|.    ...   -.+.....+.+|.+++
T Consensus       199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~  278 (446)
T PF10165_consen  199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA  278 (446)
T ss_pred             CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence             123456777777777774221111       000000110  13444444443    222   1245666788888888


Q ss_pred             CCChhhHHHHHHHhhHh---------hhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          451 TGKESHKEAVMDQLLLR---------AENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       451 ~~~~~~~~~i~~~~~~~---------~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      ......|+.+-..++|-         +...+-..|++++.+..+.+|..++..+-.++.
T Consensus       279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK  337 (446)
T ss_pred             HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence            76665566555544442         334567789999999999999999999988884

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.014  Score=57.83  Aligned_cols=268  Identities=17%  Similarity=0.139  Sum_probs=140.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 008827          251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR-LLDDTSTAVQVAALGAISNIVVDFTTRRST  329 (552)
Q Consensus       251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~  329 (552)
                      +..+..-..+++..+|..|+..|.+.+...+.-.+.  .....+..++. +..+.+.+|+.++..+|..+...-....-.
T Consensus       260 ~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~t--h~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~  337 (533)
T KOG2032|consen  260 LLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRT--HKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE  337 (533)
T ss_pred             HHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHH--hHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence            334444445788899999999999998764433332  12233444444 445567899999999998776422211100


Q ss_pred             HHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHH--hhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827          330 FIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM--ELTASLLASLICDPEPSVQEQALALVRNLVDG  407 (552)
Q Consensus       330 ~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~--~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  407 (552)
                      ..--++.-.+..+..+.+++.|.++...++.++.......++...+  .+....++-.+.++++.+-..+=..++.+.-+
T Consensus       338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~  417 (533)
T KOG2032|consen  338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPN  417 (533)
T ss_pred             hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCch
Confidence            1111344556677889999999999988887765333334443332  12334455556778877765444444333211


Q ss_pred             CcchHHHHHhhcCchHHHHHHHhcccCchhHHHH-HHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChh
Q 008827          408 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQ-GMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSR  486 (552)
Q Consensus       408 ~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~-a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~  486 (552)
                      -      ..++   ....+-+.++. .-+..+.. .-|++ .+....++ +-.+           ......-++++..+.
T Consensus       418 l------~rke---~~~~~q~~ld~-~~~~~q~Fyn~~c~-~L~~i~~d-~l~~-----------~~t~~~~~f~sswe~  474 (533)
T KOG2032|consen  418 L------VRKE---LYHLFQESLDT-DMARFQAFYNQWCI-QLNHIHPD-ILML-----------LLTEDQHIFSSSWEQ  474 (533)
T ss_pred             h------HHHH---HHHHHhhhhHH-hHHHHHHHHHHHHH-HHhhhCHH-HHHH-----------HHHhchhheecchHH
Confidence            0      0000   11111111110 00000000 00111 11111111 1011           112223345556667


Q ss_pred             HHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhh
Q 008827          487 LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  546 (552)
Q Consensus       487 ~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~  546 (552)
                      +|..+...-.++.-   .-+++.....-..-....|..+.+|+.+++++.+..|+..+..
T Consensus       475 vr~aavl~t~~~vd---~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  475 VREAAVLKTTRSVD---SLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHHHHHHHHH---HhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            77777766666652   2233333333333345677788899999999999999988764

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.32  E-value=0.02  Score=50.85  Aligned_cols=93  Identities=20%  Similarity=0.239  Sum_probs=74.6

Q ss_pred             CHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHh
Q 008827          305 STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS  384 (552)
Q Consensus       305 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~  384 (552)
                      +|.+|..++.+++-++..++..-     ...++.+...|.++++.+|..|+..|.+|....--..+     ...+..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k-----~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK-----GQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh-----hhhhHHHHH
Confidence            57899999999999988776533     35688999999999999999999999999763221112     223467778


Q ss_pred             hhcCCChhHHHHHHHHHHHhhcC
Q 008827          385 LICDPEPSVQEQALALVRNLVDG  407 (552)
Q Consensus       385 ll~~~~~~v~~~a~~~L~~l~~~  407 (552)
                      ++.+++++|+..|..++..+...
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHh
Confidence            88999999999999999999866

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.28  E-value=0.1  Score=53.61  Aligned_cols=267  Identities=16%  Similarity=0.132  Sum_probs=158.4

Q ss_pred             HHHHHHhhcccccccchhhhccCcHHHHHHhh----------cCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHH
Q 008827          270 CMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL----------DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLL  339 (552)
Q Consensus       270 ~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL----------~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L  339 (552)
                      +.+|+.++|.... ... +.....+..|.++-          ..+++.+..+|..+|+|+....+..++.+.+.|..+.+
T Consensus         2 L~~LRiLsRd~~~-~~~-l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    2 LETLRILSRDPTG-LDP-LFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             HHHHHHHccCccc-chh-hccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            4567788887433 333 56666777777765          24588999999999999999999999999999999999


Q ss_pred             HHhhcCC-----CHHHHHHHHHHHHHhcccCChHhHHHHHHh-hcHHHHHhhhc----C-------------CChhHHHH
Q 008827          340 VQLSKSM-----DSTIRLNALRALRNLIFLAEDKCKEEIFME-LTASLLASLIC----D-------------PEPSVQEQ  396 (552)
Q Consensus       340 ~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~-~~~~~l~~ll~----~-------------~~~~v~~~  396 (552)
                      ++.++..     +.++.....+.|.-++. ..++.+..+.+. ++...+...+.    .             .+......
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa-~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E  158 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTA-LRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE  158 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhc-CChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence            9999876     67788878887776655 345667676655 55555555441    1             13445667


Q ss_pred             HHHHHHHhhcCCcchHHHHHhhc-CchHHHHHHHh----cccCchhHHHHHHHHHHhhcCCChhh-------HHHHHHHh
Q 008827          397 ALALVRNLVDGRINSVEYIFAED-GIILDAVGRQL----RIASKAEIEIQGMYVLGNVATGKESH-------KEAVMDQL  464 (552)
Q Consensus       397 a~~~L~~l~~~~~~~~~~i~~~~-~~~~~~l~~~L----~~~~~~~v~~~a~~~L~~la~~~~~~-------~~~i~~~~  464 (552)
                      ++.++-|+....+.....-+... ..++..+..++    ...+......++..+|.|+--.+...       ...+..  
T Consensus       159 iLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~--  236 (446)
T PF10165_consen  159 ILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFP--  236 (446)
T ss_pred             HHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccC--
Confidence            88888888766544322111110 00333333331    11133467778888888874221110       000000  


Q ss_pred             hHhhhhhhHHHHHHhhcC----C-C---hhHHHHHHHHHHhhcCCCCCCCHHHHHHHHH----------------CCcHH
Q 008827          465 LLRAENKAQSCIIKFLQS----N-D---SRLRTAAVWAVLNLTCSSSPGSSGRLVKLHD----------------AGIVS  520 (552)
Q Consensus       465 ~~~~~~~~v~~Lv~lL~~----~-~---~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~----------------~g~~~  520 (552)
                       ...+..++..|+.+|..    . +   .+.-.--..+|.+++..    ....++.+..                ...-.
T Consensus       237 -~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~----~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~  311 (446)
T PF10165_consen  237 -EGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARA----AREVRKYLRARLLPPDKDRKKPPEKGDTLRS  311 (446)
T ss_pred             -CCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHh----cHHHHHHHHHHhCCChhhcccCCCCCcchHH
Confidence             00113344555555542    1 1   12334455555666531    1222222222                23447


Q ss_pred             HHHhhhcCCCccHHHHHHHHHHHHhh
Q 008827          521 HVKNMVNDPCLDVKLRVKTALEQFNS  546 (552)
Q Consensus       521 ~L~~ll~~~~~~v~~~a~~al~~~~~  546 (552)
                      .|+++++++.+++|+.+..-|..+.+
T Consensus       312 rLlrLmt~~~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  312 RLLRLMTSPDPQLKDAVAELLFVLCK  337 (446)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHHHh
Confidence            88898888778999888877766543

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.28  E-value=0.1  Score=53.94  Aligned_cols=305  Identities=15%  Similarity=0.142  Sum_probs=148.1

Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhh
Q 008827           81 RLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVG  160 (552)
Q Consensus        81 ~L~~lL~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~  160 (552)
                      .++...+++.+.+.-|..-+....++.|+..        ..++..++.|+.|++..||..|.+.|..++...+++     
T Consensus        27 ~il~~~kg~~k~K~Laaq~I~kffk~FP~l~--------~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~-----   93 (556)
T PF05918_consen   27 EILDGVKGSPKEKRLAAQFIPKFFKHFPDLQ--------EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEH-----   93 (556)
T ss_dssp             HHHHGGGS-HHHHHHHHHHHHHHHCC-GGGH--------HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T------
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHHhhChhhH--------HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHH-----
Confidence            4555566788888889999999888877775        457788999999999999999999999999875543     


Q ss_pred             hHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhc-CCCChhhHHHHHHHHHHhhc-C
Q 008827          161 IKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQK-GSLHPRRFEGILLALADMCS-K  237 (552)
Q Consensus       161 ~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~~~~~~~~~a~~aL~~l~~-~  237 (552)
                       ...+...|+++|. +++.....+-.+|..+...++.        +.+..+++.+.. ...+..+|+.++..|..=.. -
T Consensus        94 -v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l  164 (556)
T PF05918_consen   94 -VSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPL  164 (556)
T ss_dssp             -HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS
T ss_pred             -HhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhC
Confidence             2468889999999 4433344445566666544443        335555555541 11236688888877753222 1


Q ss_pred             ChhHHH--HHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh------cCCCHHHH
Q 008827          238 LECCRS--RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL------DDTSTAVQ  309 (552)
Q Consensus       238 ~~~~~~--~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL------~~~~~~v~  309 (552)
                      ..+.-.  .-.+.-++..+-..|.+-..+=-.....+|..+..- ...... -.....++.+....      ...|++..
T Consensus       165 ~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~-~~~~t~-~g~qeLv~ii~eQa~Ld~~f~~sD~e~I  242 (556)
T PF05918_consen  165 KPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIY-GGKQTI-EGRQELVDIIEEQADLDQPFDPSDPESI  242 (556)
T ss_dssp             -TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG----GSSH-HHHHHHHHHHHHHHTTTS---SSSHHHH
T ss_pred             cHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccc-cccCCh-HHHHHHHHHHHHHhccCCCCCCcCHHHH
Confidence            111111  222334566666777652221111122333333220 000000 00111223333222      12355555


Q ss_pred             HHHHHHHHH----hhcCCchhH-HHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHh
Q 008827          310 VAALGAISN----IVVDFTTRR-STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS  384 (552)
Q Consensus       310 ~~a~~aL~n----l~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~  384 (552)
                      ..-..++..    +..+....+ -.++-..++|.+-.+    ++..+..-+.+++.++....+......+ ..+++.|..
T Consensus       243 drli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L-~~i~~~L~~  317 (556)
T PF05918_consen  243 DRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLL-PSIFQLLKK  317 (556)
T ss_dssp             HHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT---------HHHHHHHHHHHHHTT----THHHHH-HHHHHHHHT
T ss_pred             HHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHH-HHHHHHHHH
Confidence            444444433    222111111 011222344433333    5577888888888887654432233333 223344444


Q ss_pred             hhcC--CCh----hHHHHHHHHHHHhhcCCcchHHH
Q 008827          385 LICD--PEP----SVQEQALALVRNLVDGRINSVEY  414 (552)
Q Consensus       385 ll~~--~~~----~v~~~a~~~L~~l~~~~~~~~~~  414 (552)
                      .+-.  ..+    ...+..+.++.+|+...|+....
T Consensus       318 ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~~~~~  353 (556)
T PF05918_consen  318 YMPSKKTEPKLQFSYVECLLYAFHQLARKSPNSLNF  353 (556)
T ss_dssp             TS----------HHHHHHHHHHHHHHHTT-THHHH-
T ss_pred             hCCCCCCCCcccchHhhHHHHHHHHHhhhCcchhhh
Confidence            4422  122    45567778888888776654433

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=0.22  Score=48.98  Aligned_cols=227  Identities=15%  Similarity=0.191  Sum_probs=145.8

Q ss_pred             HHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccc---------cccchhhhccCcHHHH
Q 008827          227 ILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK---------NLSAGSFMNETIVIPL  297 (552)
Q Consensus       227 a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~---------~~~~~~~~~~~~i~~L  297 (552)
                      ++.-+..++. -|+....+++.++++.++++|.|.|.++-.+.+..+..++...-         .+-.. +++.++++.|
T Consensus       104 ~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLida-Lvdg~vlaLL  181 (536)
T KOG2734|consen  104 IIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDA-LVDGQVLALL  181 (536)
T ss_pred             HHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHH-HHhccHHHHH
Confidence            3444455554 56777888999999999999999999999999999999986421         11222 5788999999


Q ss_pred             HHhhcCCCHHHH------HHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhcccCChHh
Q 008827          298 VRLLDDTSTAVQ------VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKC  369 (552)
Q Consensus       298 v~lL~~~~~~v~------~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~  369 (552)
                      ++-++.-|..+.      ..+...+-|++.-.+.....+.+.|.+..|+.-+..  +-..-+..+...|.-+..+++ +.
T Consensus       182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~-e~  260 (536)
T KOG2734|consen  182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD-EN  260 (536)
T ss_pred             HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc-hh
Confidence            988864333333      455566778876666666677778888887764443  334566777777777765443 35


Q ss_pred             HHHHHHhhcHHHHHhhhc-----CC----ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc-hHHHHHHHhcccCchhHH
Q 008827          370 KEEIFMELTASLLASLIC-----DP----EPSVQEQALALVRNLVDGRINSVEYIFAEDGI-ILDAVGRQLRIASKAEIE  439 (552)
Q Consensus       370 ~~~i~~~~~~~~l~~ll~-----~~----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~-~~~~l~~~L~~~~~~~v~  439 (552)
                      +...-.-.+++.+++-+.     +|    ..+..++....|..+... +......+.+.|. .+.++.+     .+..-+
T Consensus       261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr-----~Kk~sr  334 (536)
T KOG2734|consen  261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLR-----EKKVSR  334 (536)
T ss_pred             hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHH-----HHHHhh
Confidence            555556677888777652     21    234566666666655543 3344455554442 3344333     233446


Q ss_pred             HHHHHHHHhhcCCCh--hhHHHHHH
Q 008827          440 IQGMYVLGNVATGKE--SHKEAVMD  462 (552)
Q Consensus       440 ~~a~~~L~~la~~~~--~~~~~i~~  462 (552)
                      .+++.+|-....|.+  ..+...++
T Consensus       335 ~SalkvLd~am~g~~gt~~C~kfVe  359 (536)
T KOG2734|consen  335 GSALKVLDHAMFGPEGTPNCNKFVE  359 (536)
T ss_pred             hhHHHHHHHHHhCCCchHHHHHHHH
Confidence            678888888877665  34444443

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.28  E-value=0.00075  Score=43.38  Aligned_cols=38  Identities=34%  Similarity=0.446  Sum_probs=34.8

Q ss_pred             hhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827          325 TRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI  362 (552)
Q Consensus       325 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  362 (552)
                      +.+..+.+.|+++.|+++++++++.++..++|+|.|++
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            35678889999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.25  E-value=0.064  Score=52.05  Aligned_cols=189  Identities=21%  Similarity=0.205  Sum_probs=114.1

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHh---hCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCC-hHhHH
Q 008827          296 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR---LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAE-DKCKE  371 (552)
Q Consensus       296 ~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~---~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~  371 (552)
                      ..+..+.+.....|+.|...+.++...... . .+++   .-.+..+.+.++.+..+-+.-|+.++.-++...+ .....
T Consensus        47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~  124 (309)
T PF05004_consen   47 EAIDLLTEKSSSTREAALEALIRALSSRYL-P-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE  124 (309)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhccc-H-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence            344455567789999999999988754322 1 2222   2356777788887776666667777776655321 12334


Q ss_pred             HHHHhhcHHHHHhhhcCCC--hhHHHHHHHHHHHh---hcCCcchHHHHHhhcCchHH--HHHHHhccc---------Cc
Q 008827          372 EIFMELTASLLASLICDPE--PSVQEQALALVRNL---VDGRINSVEYIFAEDGIILD--AVGRQLRIA---------SK  435 (552)
Q Consensus       372 ~i~~~~~~~~l~~ll~~~~--~~v~~~a~~~L~~l---~~~~~~~~~~i~~~~~~~~~--~l~~~L~~~---------~~  435 (552)
                      .+++. ..+.|.+.+.+.+  +.++..++.+|+-+   +..+++.+...++    .++  +......+.         ++
T Consensus       125 ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~----~le~if~~~~~~~~~~~~~~~~~~~  199 (309)
T PF05004_consen  125 EIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME----SLESIFLLSILKSDGNAPVVAAEDD  199 (309)
T ss_pred             HHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH----HHHHHHHHHhcCcCCCcccccCCCc
Confidence            55543 5778888887654  34555655555544   4455555554334    334  222222221         23


Q ss_pred             hhHHHHHHHHHHhhcCCChh-hHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          436 AEIEIQGMYVLGNVATGKES-HKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       436 ~~v~~~a~~~L~~la~~~~~-~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                      +.+...|+.+-+-+.+.-+. ......        ...++.|+.+|.++|.+||.+|.-+|.-+-
T Consensus       200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~--------~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  200 AALVAAALSAWALLLTTLPDSKLEDLL--------EEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            45777776666666653332 222333        456799999999999999999998887553

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.25  E-value=0.041  Score=51.54  Aligned_cols=255  Identities=9%  Similarity=0.045  Sum_probs=144.5

Q ss_pred             hhhHHHHHHHHHHhhcCChhHHHHHH-hcccHHHHHHhcCC--CCHHHHHHHHHHHHHhhcccccccchhh-hccCcHHH
Q 008827          221 PRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVDALAH--DSSDVRSAACMCLRSVSRSIKNLSAGSF-MNETIVIP  296 (552)
Q Consensus       221 ~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~lv~~L~~--~~~~v~~~a~~~L~~ls~~~~~~~~~~~-~~~~~i~~  296 (552)
                      +-.+.-|+.++.++.. .++.|..+. +...--.+++.++.  +...+++.+.-+++.++.+.. ..+. + .....+..
T Consensus       163 ~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqd-i~K~~dli~d  239 (432)
T COG5231         163 FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQD-IDKMDDLIND  239 (432)
T ss_pred             HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHH-HHHHHHHHHH
Confidence            4467778888888876 456666544 44455667777764  567899999999999988732 2221 1 11245666


Q ss_pred             HHHhhc-CCCHHHHHHHHHHHHHhhcCCc-hhHHHHHhhC-cHHHHHHhhcC--CCHHHHHHHHHHHHHhcccCChHhHH
Q 008827          297 LVRLLD-DTSTAVQVAALGAISNIVVDFT-TRRSTFIRLG-GVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKCKE  371 (552)
Q Consensus       297 Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~-~~~~~~~~~g-~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~  371 (552)
                      |+++.+ +....+..-+++.+.|++...+ .....+.-.| +.+..--+++.  ++++++...-..=..+.. ..  .+.
T Consensus       240 li~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~-~~--k~l  316 (432)
T COG5231         240 LIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ-NT--KKL  316 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh-hh--hhh
Confidence            777776 3466788889999999987332 2222222234 44444344443  355554433222222211 10  111


Q ss_pred             HHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchh-HHHHHHHHHHhhc
Q 008827          372 EIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE-IEIQGMYVLGNVA  450 (552)
Q Consensus       372 ~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~-v~~~a~~~L~~la  450 (552)
                      -.++.-.-+.--.++..+.+..... .|         ..+++.+.+..-.++..|..++++ +++. ...-||.-++.+.
T Consensus       317 ~~fD~Y~~ELdsg~l~wSp~H~~~d-FW---------s~N~d~l~kdny~i~k~L~~~lq~-n~~nt~i~vAc~Di~~~V  385 (432)
T COG5231         317 CIFDNYLNELDSGRLEWSPYHHKKD-FW---------STNLDMLIKDNYEIVKVLKKYLQS-NNPNTWICVACSDIFQLV  385 (432)
T ss_pred             hHHHHHHHHHhhCcccCCCcccccC-ch---------hhhHHHHhhhhHHHHHHHHHHHhc-CCCCceEeeeHhhHHHHH
Confidence            1111111111112222222211110 00         011222222211167777788887 5555 4556788888888


Q ss_pred             CCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          451 TGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       451 ~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                      ...|..+..+..       .|+-..++.++.++|+++|.+|..++..+.
T Consensus       386 r~~PE~~~vl~K-------yg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         386 RASPEINAVLSK-------YGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HhCchHHHHHHH-------hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            777765554443       788899999999999999999999988776

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.06  Score=56.05  Aligned_cols=162  Identities=15%  Similarity=0.147  Sum_probs=103.9

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhh-hcCCChhHHHHHHHHHHHhhcCCcchHH
Q 008827          335 GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL-ICDPEPSVQEQALALVRNLVDGRINSVE  413 (552)
Q Consensus       335 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~  413 (552)
                      +=+.+-+++.+.++-+|...+.++.---.+..        ..+.+..|+.. ..+.+.+|+..|..+|+-++..+|+.  
T Consensus       520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg--------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~--  589 (929)
T KOG2062|consen  520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTG--------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ--  589 (929)
T ss_pred             hHHHHHHHhcCCchhhhhhhHHHHHHHHhccC--------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--
Confidence            33444467777788888887766642211111        12345566665 67889999999999999999998863  


Q ss_pred             HHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHH
Q 008827          414 YIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVW  493 (552)
Q Consensus       414 ~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~  493 (552)
                               .+-.+++|..+-|+.||..++.+|+-.++|.- .+.             .+..|-.+..++..-||..|+.
T Consensus       590 ---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~e-------------Ai~lLepl~~D~~~fVRQgAlI  646 (929)
T KOG2062|consen  590 ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKE-------------AINLLEPLTSDPVDFVRQGALI  646 (929)
T ss_pred             ---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHH-------------HHHHHhhhhcChHHHHHHHHHH
Confidence                     44455666666899999999999997777653 222             2234555666777789999998


Q ss_pred             HHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHH
Q 008827          494 AVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVK  534 (552)
Q Consensus       494 ~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~  534 (552)
                      ++..+..-..+..-.+.     .|+.+.+.+.+.|.+++.-
T Consensus       647 a~amIm~Q~t~~~~pkv-----~~frk~l~kvI~dKhEd~~  682 (929)
T KOG2062|consen  647 ALAMIMIQQTEQLCPKV-----NGFRKQLEKVINDKHEDGM  682 (929)
T ss_pred             HHHHHHHhcccccCchH-----HHHHHHHHHHhhhhhhHHH
Confidence            88877642111111111     2334566666665555533

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.21  E-value=0.0019  Score=50.45  Aligned_cols=90  Identities=23%  Similarity=0.263  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhh--hccCcHHHHHHhh
Q 008827          224 FEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF--MNETIVIPLVRLL  301 (552)
Q Consensus       224 ~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~--~~~~~i~~Lv~lL  301 (552)
                      |..++.+|+..+..-... -.-.-..++|+++..+.+++++||+.||.+|.++++....   . +  .-..+.+.|.+++
T Consensus         3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~---~-~l~~f~~IF~~L~kl~   77 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG---E-ILPYFNEIFDALCKLS   77 (97)
T ss_pred             hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHH
Confidence            455666666665422211 1111124799999999999999999999999999876322   2 2  2356778888889


Q ss_pred             cCCCHHHHHHHHHHHHHh
Q 008827          302 DDTSTAVQVAALGAISNI  319 (552)
Q Consensus       302 ~~~~~~v~~~a~~aL~nl  319 (552)
                      .|+++.|+..| ..|-++
T Consensus        78 ~D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   78 ADPDENVRSAA-ELLDRL   94 (97)
T ss_pred             cCCchhHHHHH-HHHHHH
Confidence            99999998777 444343

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.17  E-value=0.0011  Score=42.67  Aligned_cols=39  Identities=18%  Similarity=0.211  Sum_probs=35.4

Q ss_pred             hHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 008827          240 CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR  278 (552)
Q Consensus       240 ~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~  278 (552)
                      +.+..+.+.|++|.+++++++++++++..++++|++++.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            467778899999999999999999999999999999863

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.16  E-value=0.0088  Score=50.74  Aligned_cols=121  Identities=17%  Similarity=0.181  Sum_probs=98.4

Q ss_pred             hhccCcHHHHHHhhcCCC------HHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC--CHHHHHHHHHHHH
Q 008827          288 FMNETIVIPLVRLLDDTS------TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--DSTIRLNALRALR  359 (552)
Q Consensus       288 ~~~~~~i~~Lv~lL~~~~------~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL~  359 (552)
                      |...++++.|+++++++.      .++...+..++.+|.... .......+...+..++.+....  +..+...|+..|-
T Consensus         7 FI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE   85 (160)
T PF11841_consen    7 FISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE   85 (160)
T ss_pred             HHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence            788899999999998654      488899999999998753 3334566667788888887653  5789999999999


Q ss_pred             HhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc
Q 008827          360 NLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN  410 (552)
Q Consensus       360 ~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~  410 (552)
                      +++.+ ++.....+.++-.++.|+..|..+++++|.+++.++..+....++
T Consensus        86 s~Vl~-S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   86 SIVLN-SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHhC-CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence            99874 456677777888899999999999999999999999888766544

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.14  E-value=0.051  Score=50.91  Aligned_cols=223  Identities=14%  Similarity=0.056  Sum_probs=135.5

Q ss_pred             hhchHHHHHHHhhcCCHHHHHHH-HHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHh-cccHHHHHH
Q 008827          179 VGDEASFAFSSLIAEKEDMQKLA-FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS-LQVLKLVVD  256 (552)
Q Consensus       179 v~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~-~~~l~~lv~  256 (552)
                      .+..|..++.++....+. +... .+..+-..+++++++.--+..++-+.+..++-++. ++.+.+.+-+ ...+.-+++
T Consensus       165 Trlfav~cl~~l~~~~e~-R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~dli~dli~  242 (432)
T COG5231         165 TRLFAVSCLSNLEFDVEK-RKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDDLINDLIA  242 (432)
T ss_pred             HHHHHHHHHhhhhhhHHH-HHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHH
Confidence            455667777777654433 3322 23344567888777653335577788888888875 4555433332 245666677


Q ss_pred             hcCCC-CHHHHHHHHHHHHHhhccc-ccccchhhhccCcHHHHHHhhc---CCCHHHHHHHHHHHHHhhcCCch------
Q 008827          257 ALAHD-SSDVRSAACMCLRSVSRSI-KNLSAGSFMNETIVIPLVRLLD---DTSTAVQVAALGAISNIVVDFTT------  325 (552)
Q Consensus       257 ~L~~~-~~~v~~~a~~~L~~ls~~~-~~~~~~~~~~~~~i~~Lv~lL~---~~~~~v~~~a~~aL~nl~~~~~~------  325 (552)
                      +.+.. ...|-+-.|..+.++.... ...-.. +.-.|-+.+.++.|.   -+|++++...-..=..+..+...      
T Consensus       243 iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~-~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~  321 (432)
T COG5231         243 IVKERAKEKVLRLCCGIVANVLDKSPKGYIFS-PLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN  321 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccchhhh-hHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            77643 4566677788888886632 111111 233344556667664   24666554332222222111100      


Q ss_pred             ------------------------hHHHHHhh--CcHHHHHHhhcCCCHH-HHHHHHHHHHHhcccCChHhHHHHHHhhc
Q 008827          326 ------------------------RRSTFIRL--GGVKLLVQLSKSMDST-IRLNALRALRNLIFLAEDKCKEEIFMELT  378 (552)
Q Consensus       326 ------------------------~~~~~~~~--g~i~~L~~ll~~~~~~-v~~~a~~aL~~l~~~~~~~~~~~i~~~~~  378 (552)
                                              +...+.+.  ..+..|.+++++.++. .-..|+.-+..+.+ ..|+.+..+...|+
T Consensus       322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr-~~PE~~~vl~Kyg~  400 (432)
T COG5231         322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVR-ASPEINAVLSKYGV  400 (432)
T ss_pred             HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHH-hCchHHHHHHHhhh
Confidence                                    11122222  3778888999887665 33446666666666 45788889999999


Q ss_pred             HHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827          379 ASLLASLICDPEPSVQEQALALVRNLV  405 (552)
Q Consensus       379 ~~~l~~ll~~~~~~v~~~a~~~L~~l~  405 (552)
                      -+.+..+++++|++|+-.|+.++..+.
T Consensus       401 k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         401 KEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            999999999999999999998876553

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.13  E-value=0.57  Score=50.84  Aligned_cols=281  Identities=13%  Similarity=0.101  Sum_probs=149.5

Q ss_pred             CcHHHHHHhhh------cCCCChhhHHHHHHHHHHhhcC--ChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008827          205 NGVDKLYNHLQ------KGSLHPRRFEGILLALADMCSK--LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV  276 (552)
Q Consensus       205 ~~i~~L~~~L~------~~~~~~~~~~~a~~aL~~l~~~--~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~l  276 (552)
                      +.++.++++|.      .+..++..++.|++++++++..  .+..-+...+.=+++++...++++.--+|..||+.++.+
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~  489 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF  489 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence            34555566666      3334567788999999998851  112223334445677888888888889999999999999


Q ss_pred             hcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHh--hCcHHHHHHhhcCCCHHHHHH
Q 008827          277 SRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIR--LGGVKLLVQLSKSMDSTIRLN  353 (552)
Q Consensus       277 s~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~  353 (552)
                      +.-.  .... -.-..+++...+.|. +.+-.|+..|+-||..+..+.....+++..  -+.++.|+.+.+..+-+.-.+
T Consensus       490 ~~~d--f~d~-~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~  566 (1010)
T KOG1991|consen  490 SSID--FKDP-NNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN  566 (1010)
T ss_pred             Hhcc--CCCh-HHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence            8421  1111 122344555566665 778899999999999998776654444432  245556666665543333333


Q ss_pred             HHH-HHHHhcccCChHhHHHHHHhhcHHHHHhhhcC---C---ChhHHHHHHHHHHHhhcCC--cchHHHHHhh-cCchH
Q 008827          354 ALR-ALRNLIFLAEDKCKEEIFMELTASLLASLICD---P---EPSVQEQALALVRNLVDGR--INSVEYIFAE-DGIIL  423 (552)
Q Consensus       354 a~~-aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~---~---~~~v~~~a~~~L~~l~~~~--~~~~~~i~~~-~~~~~  423 (552)
                      .+. .++.+...-.| ....+. ........+++.+   .   +.+=+..|+++|+.+..--  -+....++.+ ..+++
T Consensus       567 vme~iV~~fseElsP-fA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l  644 (1010)
T KOG1991|consen  567 VMEKIVCKFSEELSP-FAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVL  644 (1010)
T ss_pred             HHHHHHHHHHHhhch-hHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            332 22333322221 111111 1233445555542   2   2233445556665554210  0001112221 11245


Q ss_pred             HHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          424 DAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       424 ~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      +.+-..|++ .-.++-+.++....+++.-.+. ....+        =++.+.+.+.+++...+.-....-++.|+..
T Consensus       645 ~vi~~iL~~-~i~dfyeE~~ei~~~~t~~~~~-Isp~m--------W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt  711 (1010)
T KOG1991|consen  645 PVIGFILKN-DITDFYEELLEIVSSLTFLSKE-ISPIM--------WGLLELILEVFQDDGIDYFTDMMPALHNYVT  711 (1010)
T ss_pred             HHHHHHHHH-hhHHHHHHHHHHHhhhhhhhcc-cCHHH--------HHHHHHHHHHHhhhhHHHHHHHHHHHhhhee
Confidence            555555665 4556666676666666543221 11111        1444555555555555555555666666553

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.10  E-value=0.0032  Score=49.22  Aligned_cols=68  Identities=13%  Similarity=0.163  Sum_probs=58.2

Q ss_pred             hchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHh
Q 008827          180 GDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS  247 (552)
Q Consensus       180 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~  247 (552)
                      +.....++++++..++.++..+.+.||+|.+++...-.+..|-+++.|++++.+|+.++++++..+.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            44567889999999999999999999999999876555467899999999999999999988776654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.09  E-value=0.58  Score=50.24  Aligned_cols=168  Identities=15%  Similarity=0.149  Sum_probs=112.6

Q ss_pred             HhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHH
Q 008827          130 VKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVD  208 (552)
Q Consensus       130 l~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  208 (552)
                      +.+.+...|..|.+-+..-...+..      + .-..|-.++... ++.+++.-.=..+.+.+...|+.....     +.
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d------m-ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLa-----vN   95 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED------M-SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLA-----VN   95 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC------h-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHH-----HH
Confidence            4556666666666544433322211      1 224444555444 445666666566666676666543322     33


Q ss_pred             HHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhh
Q 008827          209 KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF  288 (552)
Q Consensus       209 ~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~  288 (552)
                      .+.+=++++  ++.+|..|+++++.+-.  ++...     .+++.+.++++++++.||+.|+-|+..+=+-.+..    +
T Consensus        96 ti~kDl~d~--N~~iR~~AlR~ls~l~~--~el~~-----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l----~  162 (757)
T COG5096          96 TIQKDLQDP--NEEIRGFALRTLSLLRV--KELLG-----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL----Y  162 (757)
T ss_pred             HHHhhccCC--CHHHHHHHHHHHHhcCh--HHHHH-----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh----h
Confidence            455545655  48899999999888742  23322     36899999999999999999999999986543332    4


Q ss_pred             hccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 008827          289 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVD  322 (552)
Q Consensus       289 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~  322 (552)
                      .+.|.+..+..++.+++|.+..+|..+|..+-..
T Consensus       163 ~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         163 HELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             hcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            5678888899999999999999999999887644

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.8  Score=50.79  Aligned_cols=223  Identities=16%  Similarity=0.176  Sum_probs=126.9

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCchhHHHHHh--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHH
Q 008827          303 DTSTAVQVAALGAISNIVVDFTTRRSTFIR--LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTAS  380 (552)
Q Consensus       303 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~  380 (552)
                      +.++.+|..+...|..++.. ++......+  ..+...+..-.++.+...+...+.+|..+....+.+ ....+...+.+
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e-~~~~i~k~I~E  742 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAE-HCDLIPKLIPE  742 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHH
Confidence            45889999999999999875 332211111  123444555566667777888888887776544422 22333344455


Q ss_pred             HHHhhhcCCChhHHHHHHHHHHHhhc--C-----CcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCC
Q 008827          381 LLASLICDPEPSVQEQALALVRNLVD--G-----RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK  453 (552)
Q Consensus       381 ~l~~ll~~~~~~v~~~a~~~L~~l~~--~-----~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~  453 (552)
                      .++.+ ++.+..-+..+..+|..++.  .     +.. ....+++   .+..+...+-+ ....+....+.++..+....
T Consensus       743 vIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lne---fl~~Isagl~g-d~~~~~as~Ivai~~il~e~  816 (1176)
T KOG1248|consen  743 VILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNE---FLSIISAGLVG-DSTRVVASDIVAITHILQEF  816 (1176)
T ss_pred             HHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHH---HHHHHHhhhcc-cHHHHHHHHHHHHHHHHHHH
Confidence            55555 88888999999988888872  1     111 1222222   23333333222 12222222244444443321


Q ss_pred             hhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccH
Q 008827          454 ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDV  533 (552)
Q Consensus       454 ~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v  533 (552)
                      ........       -.+++..+..+|.+++++++..|+..+..++.    ..++-...-.....++.+..++++....+
T Consensus       817 ~~~ld~~~-------l~~li~~V~~~L~s~sreI~kaAI~fikvlv~----~~pe~~l~~~~~~LL~sll~ls~d~k~~~  885 (1176)
T KOG1248|consen  817 KNILDDET-------LEKLISMVCLYLASNSREIAKAAIGFIKVLVY----KFPEECLSPHLEELLPSLLALSHDHKIKV  885 (1176)
T ss_pred             hccccHHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----cCCHHHHhhhHHHHHHHHHHHHHhhhHHH
Confidence            11111111       14566677888999999999999999999986    22222222223345677777777666666


Q ss_pred             HHHHHHHHHHH
Q 008827          534 KLRVKTALEQF  544 (552)
Q Consensus       534 ~~~a~~al~~~  544 (552)
                      +.++.--|+.+
T Consensus       886 r~Kvr~LlekL  896 (1176)
T KOG1248|consen  886 RKKVRLLLEKL  896 (1176)
T ss_pred             HHHHHHHHHHH
Confidence            66665555443

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.01  E-value=0.73  Score=50.08  Aligned_cols=436  Identities=12%  Similarity=0.122  Sum_probs=222.0

Q ss_pred             cHHHHHHHHHHHHHHHcCC-----CCCCcccccccchHHHHHhhc--CCCCcchHHHHHHHHhhcCChhhHHHHHhcCch
Q 008827            7 YMEVVDAGARSLKMIYQSK-----MAPKYDFLQEENMEFLLSLLN--NESENVSGLGASIISHSCKTSLEQKLLFDAGVL   79 (552)
Q Consensus         7 ~~~~~~~~l~~l~~l~~~~-----~~~~~~~~~~~~i~~l~~ll~--~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i   79 (552)
                      .-++++.++..+.--...|     +.. .+..+.+--+.+-+-..  .+..+=..++...+..+++. ..+..+  .|.+
T Consensus       337 twkll~PHl~~ii~~vIFPlmc~~d~d-eelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~K-R~ke~l--~k~l  412 (1010)
T KOG1991|consen  337 TWKLLKPHLQVIIQDVIFPLMCFNDED-EELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSK-RGKETL--PKIL  412 (1010)
T ss_pred             HHHHhhhHHHHHHHHhhhhhcCCCccc-HHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHh-cchhhh--hhHH
Confidence            3456666666665443333     233 33344343333333222  11122234555666666532 222222  4667


Q ss_pred             HHHHHhhcC---------CHHHHHHHHHHHHHHhcC---ChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHH
Q 008827           80 KRLTSLLGG---------SLIQRDASLESIATIFKN---NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIV  147 (552)
Q Consensus        80 ~~L~~lL~~---------~~~v~~~al~~L~~l~~~---~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~  147 (552)
                      +.+++.|++         +++-+.-|+.+++.++.-   ...+...+-    .=.+..++..++++.--.|..|++.+..
T Consensus       413 ~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE----~flv~hVfP~f~s~~g~Lrarac~vl~~  488 (1010)
T KOG1991|consen  413 SFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQME----YFLVNHVFPEFQSPYGYLRARACWVLSQ  488 (1010)
T ss_pred             HHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHH----HHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence            888888872         245677899999998721   111111110    1123445668899999999999999999


Q ss_pred             HhhhCCCcchhhhhHHhHHHHHHHhcCCC--CchhchHHHHHHHhhcCCHHHHHHHH--HhCcHHHHHHhhhcCCCChhh
Q 008827          148 IRNASPCYLQDVGIKTKLINNLLELLDDP--GRVGDEASFAFSSLIAEKEDMQKLAF--EVNGVDKLYNHLQKGSLHPRR  223 (552)
Q Consensus       148 l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~~L~~~~~~~~~  223 (552)
                      ++...   ..+...-..+++.-.+.|.++  -+|+.+|+.+|..+.++.+.....+.  -.+.++.|+++.+...  -+.
T Consensus       489 ~~~~d---f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E--nd~  563 (1010)
T KOG1991|consen  489 FSSID---FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE--NDD  563 (1010)
T ss_pred             HHhcc---CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc--hhH
Confidence            88643   234444556777777777733  47899999999999887765422221  2344556666444332  111


Q ss_pred             HHHHHHHHHHhhcCChhHHHHHH--hcccHHHHHHhcCC------CCHHHHHHHHHHHHHhhc---ccccccch-hhhcc
Q 008827          224 FEGILLALADMCSKLECCRSRCL--SLQVLKLVVDALAH------DSSDVRSAACMCLRSVSR---SIKNLSAG-SFMNE  291 (552)
Q Consensus       224 ~~~a~~aL~~l~~~~~~~~~~~~--~~~~l~~lv~~L~~------~~~~v~~~a~~~L~~ls~---~~~~~~~~-~~~~~  291 (552)
                      ....+..+-  +...++...-..  -..+...+.+.+..      .+.+-..+|.++|+.++.   +.++.... +-.+.
T Consensus       564 Lt~vme~iV--~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~  641 (1010)
T KOG1991|consen  564 LTNVMEKIV--CKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEP  641 (1010)
T ss_pred             HHHHHHHHH--HHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            122221111  111222211111  12345556666653      123444566666665532   11111111 01234


Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChH-hH
Q 008827          292 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK-CK  370 (552)
Q Consensus       292 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~  370 (552)
                      -++|.+-.+|++.-.++-+.+...+.+++.-.......  --|..+.+.+.........-....-+|.|+.....+. .+
T Consensus       642 ~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~--mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s  719 (1010)
T KOG1991|consen  642 IVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPI--MWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLS  719 (1010)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhc
Confidence            44555555677777788888888887776543221111  1367777888888777777778888888876543332 22


Q ss_pred             HHHHHhhcHHHHHhhhcCC--ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHh-cccCchhHHHHHHHHHH
Q 008827          371 EEIFMELTASLLASLICDP--EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL-RIASKAEIEIQGMYVLG  447 (552)
Q Consensus       371 ~~i~~~~~~~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L-~~~~~~~v~~~a~~~L~  447 (552)
                      ....-...++.+...+.+.  ...-...|+.++..+..+..+.++..+..   .++.....+ ....+...+..++.+..
T Consensus       720 ~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~ipl---f~~~a~~~l~~~~e~s~~~~~~leVvi  796 (1010)
T KOG1991|consen  720 NPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPL---FLELALSRLTREVETSELRVMLLEVVI  796 (1010)
T ss_pred             cchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHH---HHHHHHHHHhccccchHHHHHHHHHHH
Confidence            2222223344555566552  23344456666666553332222222111   111211112 21134455555665555


Q ss_pred             hhcCCChhhHHHHHH
Q 008827          448 NVATGKESHKEAVMD  462 (552)
Q Consensus       448 ~la~~~~~~~~~i~~  462 (552)
                      |.---+|...-.+++
T Consensus       797 nalyynP~ltL~iLe  811 (1010)
T KOG1991|consen  797 NALYYNPKLTLGILE  811 (1010)
T ss_pred             HHHHcCcHHHHHHHH
Confidence            444444544444444

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.93  E-value=0.0048  Score=48.22  Aligned_cols=92  Identities=20%  Similarity=0.262  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHh
Q 008827           93 RDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLEL  172 (552)
Q Consensus        93 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~l  172 (552)
                      |..++.+|..++..-+.......    ...+++++..+.|++++||..|..+|+++++.......+  .-..+.+.|.++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l----~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~--~f~~IF~~L~kl   76 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYL----DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP--YFNEIFDALCKL   76 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHH----HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            45566677666544322222222    567889999999999999999999999999864332111  224577777887


Q ss_pred             cCCC-CchhchHHHHHHHhh
Q 008827          173 LDDP-GRVGDEASFAFSSLI  191 (552)
Q Consensus       173 l~~~-~~v~~~a~~~L~~l~  191 (552)
                      +.+. +.|+ .++..|-++.
T Consensus        77 ~~D~d~~Vr-~~a~~Ld~ll   95 (97)
T PF12755_consen   77 SADPDENVR-SAAELLDRLL   95 (97)
T ss_pred             HcCCchhHH-HHHHHHHHHh
Confidence            7754 4555 4445555543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.80  E-value=0.1  Score=55.07  Aligned_cols=241  Identities=17%  Similarity=0.190  Sum_probs=156.4

Q ss_pred             hhccCcHHHHHHhhcCCCHHHHHHHHHHHH-HhhcCCchhHHHHHhhCcHHHHHHhhcCCCHH-HHHHHHHHHHHhcccC
Q 008827          288 FMNETIVIPLVRLLDDTSTAVQVAALGAIS-NIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST-IRLNALRALRNLIFLA  365 (552)
Q Consensus       288 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~-nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~-v~~~a~~aL~~l~~~~  365 (552)
                      .+..|+...|+.+.....++.+..+..+|. .+.  ++..+    ....++.+...++..... -...++.++.|++..+
T Consensus       500 ~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~--f~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s  573 (748)
T KOG4151|consen  500 KIKPGGYEALLRLGQQQFEEAKLKWYHALAGKID--FPGER----SYEVVKPLDSALHNDEKGLENFEALEALTNLASIS  573 (748)
T ss_pred             cccccHHHHHHHHHHHhchHHHHHHHHHHhhhcC--CCCCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcc
Confidence            678899999999998777788888888887 222  22221    124566666666554322 2345888999998744


Q ss_pred             ChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHH
Q 008827          366 EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYV  445 (552)
Q Consensus       366 ~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~  445 (552)
                       ...|.++..+.+.+-+-.++...++..|..++..+.||.-+.- .++..+-+...=.+.....+.. ........++.+
T Consensus       574 -~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~-~~e~si~e~~~~l~~w~~~~e~-~~E~~~lA~a~a  650 (748)
T KOG4151|consen  574 -ESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPL-LYERSIVEYKDRLKLWNLNLEV-ADEKFELAGAGA  650 (748)
T ss_pred             -hhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHH-HHHHHhhccccCchHHHHHHHh-hhhHHhhhcccc
Confidence             3567778888888888888999999999999999999986632 2222222211012222222333 445566677777


Q ss_pred             HHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhh
Q 008827          446 LGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNM  525 (552)
Q Consensus       446 L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~l  525 (552)
                      +..+++..+.++..+.+      .......++.++.+.+..+++.....+.|+..    ...+....+.+....+.+..+
T Consensus       651 ~a~I~sv~~n~c~~~~~------~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~----~~~ei~~~~~~~~~~~~l~~~  720 (748)
T KOG4151|consen  651 LAAITSVVENHCSRILE------LLEWLEILVRAIQDEDDEIQHRGLVIILNLFE----ALFEIAEKIFETEVMELLSGL  720 (748)
T ss_pred             ccchhhcchhhhhhHHH------hhcchHHHHHhhcCchhhhhhhhhhhhhhHHH----HHHHHHHHhccchHHHHHHHH
Confidence            77677655555554332      13445788999999999999999999999653    556667777777766666665


Q ss_pred             hcCCCccHHHHHHHHHHHHhhh
Q 008827          526 VNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       526 l~~~~~~v~~~a~~al~~~~~~  547 (552)
                      -.-.-.-.++.+..+|.-+.++
T Consensus       721 ~~~~~a~~~~~~~~~l~~a~~~  742 (748)
T KOG4151|consen  721 QKLNRAPKREDAAPCLSAAEEY  742 (748)
T ss_pred             HHhhhhhhhhhhhhHHHHHHHh
Confidence            3222234555666666554443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.64  E-value=0.49  Score=45.96  Aligned_cols=195  Identities=18%  Similarity=0.164  Sum_probs=113.0

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHH---hhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC--Ccch
Q 008827          337 KLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM---ELTASLLASLICDPEPSVQEQALALVRNLVDG--RINS  411 (552)
Q Consensus       337 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~---~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~  411 (552)
                      ...+..+.......|+.++..+.++....-   ....++   .-.++.+.+.++.+..+-+.-|+.++.-++..  ..+.
T Consensus        46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~---~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~  122 (309)
T PF05004_consen   46 KEAIDLLTEKSSSTREAALEALIRALSSRY---LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED  122 (309)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence            344455555668889999998888764321   112221   23567778888877777777777777777644  2334


Q ss_pred             HHHHHhhcCchHHHHHHHhccc-CchhHHHHHHHHHHhhc---CCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC-----
Q 008827          412 VEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVA---TGKESHKEAVMDQLLLRAENKAQSCIIKFLQS-----  482 (552)
Q Consensus       412 ~~~i~~~~~~~~~~l~~~L~~~-~~~~v~~~a~~~L~~la---~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~-----  482 (552)
                      ...+++.   +.+.|.+.+... ..+.++..++.+|+-++   .+.+......++.      .+.+ .....+++     
T Consensus       123 ~~ei~~~---~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~------le~i-f~~~~~~~~~~~~  192 (309)
T PF05004_consen  123 SEEIFEE---LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMES------LESI-FLLSILKSDGNAP  192 (309)
T ss_pred             HHHHHHH---HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHH------HHHH-HHHHhcCcCCCcc
Confidence            5566665   578888888763 23456666665555443   3333333322210      1100 11122222     


Q ss_pred             -----CChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhc
Q 008827          483 -----NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  548 (552)
Q Consensus       483 -----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~  548 (552)
                           +++.+..+|..+-+-|...   -........ -...++.|..+|++++.+||-.|..+|.-+.+.+
T Consensus       193 ~~~~~~~~~l~~aAL~aW~lLlt~---~~~~~~~~~-~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~  259 (309)
T PF05004_consen  193 VVAAEDDAALVAAALSAWALLLTT---LPDSKLEDL-LEEALPALSELLDSDDVDVRIAAGEAIALLYELA  259 (309)
T ss_pred             cccCCCccHHHHHHHHHHHHHHhc---CCHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence                 1345676666555555431   111122222 2345899999999999999999999999887764

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.62  E-value=0.011  Score=46.13  Aligned_cols=65  Identities=23%  Similarity=0.354  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhh--cCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 008827          350 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI--CDPEPSVQEQALALVRNLVDGRINSVEYI  415 (552)
Q Consensus       350 v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll--~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  415 (552)
                      .|...+..++|+++ ..+..+..+.+.++++.++..-  ++.+|.+++.|+++++|++.++++..+.+
T Consensus         2 ~K~~lvrlianl~~-~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I   68 (102)
T PF09759_consen    2 FKRDLVRLIANLCY-KNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI   68 (102)
T ss_pred             cHHHHHHHHHHHHh-CCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            35677889999997 4578999999999999999865  46789999999999999999988655444

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.57  E-value=0.048  Score=58.16  Aligned_cols=190  Identities=19%  Similarity=0.235  Sum_probs=134.1

Q ss_pred             HHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHH--------HH----HHhCcHHHHHHhhhcCCCChhhHHHHHHHHH
Q 008827          165 LINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK--------LA----FEVNGVDKLYNHLQKGSLHPRRFEGILLALA  232 (552)
Q Consensus       165 ~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~--------~~----~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~  232 (552)
                      +...|+.+|+. +.+...++.+++-+.+|.+...+        ..    +=+..+|.|++.+...  +...+..-+.+|.
T Consensus       816 ia~klld~Ls~-~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~--~~~~K~~yl~~Ls  892 (1030)
T KOG1967|consen  816 IAEKLLDLLSG-PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETA--PGSQKHNYLEALS  892 (1030)
T ss_pred             HHHHHHHhcCC-ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccC--CccchhHHHHHHH
Confidence            45556666653 45666777888877777665432        12    2246678899877743  3567888899999


Q ss_pred             HhhcCChhHHHHHHh--cccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCC---HH
Q 008827          233 DMCSKLECCRSRCLS--LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS---TA  307 (552)
Q Consensus       233 ~l~~~~~~~~~~~~~--~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~---~~  307 (552)
                      ++-.+-|.  ..+..  ...+|.+++.|.-++..+|..+..++.-+....+.+...  .-..++|.++.+=.+.+   ..
T Consensus       893 hVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~--~~~Tlvp~lLsls~~~~n~~~~  968 (1030)
T KOG1967|consen  893 HVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE--HLSTLVPYLLSLSSDNDNNMMV  968 (1030)
T ss_pred             HHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH--HHhHHHHHHHhcCCCCCcchhH
Confidence            88765443  22222  248999999999999999999999998886654555443  34567888887776654   68


Q ss_pred             HHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008827          308 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL  361 (552)
Q Consensus       308 v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l  361 (552)
                      +|+.|..+|..++...+...-.-....++..|...|.++...+|..|+.+=.++
T Consensus       969 VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen  969 VREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             HHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence            999999999999874443332334456788888999888888999988765554

>PRK14707 hypothetical protein; Provisional

Probab=96.57  E-value=2.5  Score=50.00  Aligned_cols=461  Identities=13%  Similarity=0.032  Sum_probs=227.0

Q ss_pred             HHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcC-CCCcchHHHHHHHHh-hcCChhhHHHHHhcCchHHHHHhhcC-
Q 008827           12 DAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNN-ESENVSGLGASIISH-SCKTSLEQKLLFDAGVLKRLTSLLGG-   88 (552)
Q Consensus        12 ~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~~~~~a~~~l~~-~~~~~~~~~~l~~~g~i~~L~~lL~~-   88 (552)
                      +.++..|-.....++.. ..-++..+|..++--++. ++...++.++..|.. ++....-+..+ +...+...+..|.. 
T Consensus       182 ~~aa~~la~~~~~~d~~-~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~-~~q~va~~lN~lsKw  259 (2710)
T PRK14707        182 QAVAPRFAALVASDDRL-RSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNEL-KPQELGNALNALSKW  259 (2710)
T ss_pred             HHHHHHHHHHhcCChhh-hcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhC-ChHHHHHHHHHHhcC
Confidence            34444444444344333 233466677776666653 444455555555554 55443323222 22234444444443 


Q ss_pred             -CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHH-HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHH
Q 008827           89 -SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE-IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLI  166 (552)
Q Consensus        89 -~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i  166 (552)
                       +..+-.++..++..=..+++...+.+.    ...+...+. +.+..+..+=..|+..|..-.-+.+. ....+-..++-
T Consensus       260 p~~~~C~~a~~~lA~rl~~~~~l~~al~----~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~-l~~~~~~~~~~  334 (2710)
T PRK14707        260 ADTPVCAAAASALAERLVDDPGLRKALD----PINVTQALNALSKWADLPVCAEAAIALAERLADDPE-LCKALNARGLS  334 (2710)
T ss_pred             CCchHHHHHHHHHHHHHhhhHHHHHhcC----HHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHh-hhhccchHHHH
Confidence             334445555555432223344433331    223333333 55566666655555554442222221 11111122333


Q ss_pred             HHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHH
Q 008827          167 NNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRC  245 (552)
Q Consensus       167 ~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~  245 (552)
                      ..|..+-+ -+..+...|+.+|..=..+++..++ -.+..++...++.|..=+ +......+..+|+.=..++.+.++.+
T Consensus       335 ~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~-~l~~q~~a~~lNalsKWp-~~~~c~~aa~~LA~~l~~d~~l~~~~  412 (2710)
T PRK14707        335 TALNALSKWPDNPVCAAAVSALAERLVADPELRK-DLEPQGVSSVLNALSKWP-DTPVCAAAASALAEHVVDDLELRKGL  412 (2710)
T ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc-ccchhHHHHHHhhhhcCC-CchHHHHHHHHHHHHhccChhhhhhc
Confidence            33444444 2345677888887755556665533 445666777777665442 34455666666665555677887777


Q ss_pred             HhcccHHHHHHhcCCCCHHHHHHHHHHHHH-hhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCC
Q 008827          246 LSLQVLKLVVDALAHDSSDVRSAACMCLRS-VSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDF  323 (552)
Q Consensus       246 ~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~-ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~  323 (552)
                      -..|+-..|-.+-+=++..++..++..|.. ++.. ..++.. +--.+ +-..+..++ =+|..+-..|+..|..-....
T Consensus       413 ~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d-~~l~~~-~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~  489 (2710)
T PRK14707        413 DPQGVSNALNALAKWPDLPICGQAVSALAGRLAHD-TELCKA-LDPIN-VTQALDALSKWPDTPICGQTASALAARLAHE  489 (2710)
T ss_pred             chhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhcc-HHHHhh-cChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhccc
Confidence            665655555555556777787777776664 4444 556654 33223 333444443 356666667777776544444


Q ss_pred             chhHHHHHhhCcHHHHHHhhcCCCHHHHH-HHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHH
Q 008827          324 TTRRSTFIRLGGVKLLVQLSKSMDSTIRL-NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVR  402 (552)
Q Consensus       324 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~-~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~  402 (552)
                      ...++.+--.++...|-.+.+-++..... .+.|.-..+..  +......+-.......+-.+-++++...-+.+...|.
T Consensus       490 ~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~--~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA  567 (2710)
T PRK14707        490 RRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVD--ELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLA  567 (2710)
T ss_pred             HHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc--chhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHH
Confidence            44555555556666676777766644333 33344444432  1112222222233334444556677666666666666


Q ss_pred             HhhcCCcchHHHHHhhcCchHHHHHHHhcccCch-hHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 008827          403 NLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA-EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ  481 (552)
Q Consensus       403 ~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~-~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~  481 (552)
                      .+....+. ...-+...  =+..+...|+.-++. ..+..+.++-+.+.. .+..+..+-.       .++...+-.+-+
T Consensus       568 ~~l~~~~~-~~~~L~aq--~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~-~~~lr~~l~~-------q~lan~lNALSK  636 (2710)
T PRK14707        568 ERLADEPQ-LPKDLHRQ--GVVIVLNALSKWPDTAVCAEAVNALAERLVD-EPDLRKELDP-------VDVTNVLNALSK  636 (2710)
T ss_pred             HHhhcchh-hHHhhhhh--HHHHHHHhhccCCCcHHHHHHHHHHHHHhcc-ChhhhhhccH-------HHHHHHHhhhhc
Confidence            65443322 22222211  244555555544443 345555555555543 3333332221       232222223323


Q ss_pred             CCChhHHHHHHHHHHh
Q 008827          482 SNDSRLRTAAVWAVLN  497 (552)
Q Consensus       482 ~~~~~~~~~a~~~l~~  497 (552)
                      -++...+..++..|..
T Consensus       637 WP~s~~C~~Aa~rLA~  652 (2710)
T PRK14707        637 WPGTEVCAEVARLLAG  652 (2710)
T ss_pred             CCCchHHHHHHHHHHH
Confidence            3555666666665544

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.50  E-value=1.5  Score=46.60  Aligned_cols=54  Identities=15%  Similarity=0.236  Sum_probs=44.6

Q ss_pred             CchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          434 SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       434 ~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                      .+..++..|..+|.++..+++..+..|.            ..+.+++.+.|.++|..|...+.++-
T Consensus       478 En~ivRaaAv~alaKfg~~~~~l~~sI~------------vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  478 ENAIVRAAAVSALAKFGAQDVVLLPSIL------------VLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             hhhhhHHHHHHHHHHHhcCCCCccccHH------------HHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            4677889999999999977775554443            57788999999999999999999887

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.45  E-value=0.041  Score=57.14  Aligned_cols=233  Identities=18%  Similarity=0.168  Sum_probs=152.2

Q ss_pred             ccccchhhhccCcHHHHHHhhcCCC--HHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827          281 KNLSAGSFMNETIVIPLVRLLDDTS--TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL  358 (552)
Q Consensus       281 ~~~~~~~~~~~~~i~~Lv~lL~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL  358 (552)
                      ++.... ++...++|.|+..+.-.+  ..+.... ..++..... .+     .+.+.+|.++++.+..+..+|..-+.-+
T Consensus       283 ~~~pe~-i~~~kvlp~Ll~~~~~g~a~~~~ltpl-~k~~k~ld~-~e-----yq~~i~p~l~kLF~~~Dr~iR~~LL~~i  354 (690)
T KOG1243|consen  283 DNFPEE-IIASKVLPILLAALEFGDAASDFLTPL-FKLGKDLDE-EE-----YQVRIIPVLLKLFKSPDRQIRLLLLQYI  354 (690)
T ss_pred             hhhhHH-HHHHHHHHHHHHHhhccccchhhhhHH-HHhhhhccc-cc-----cccchhhhHHHHhcCcchHHHHHHHHhH
Confidence            344444 666677777777775443  1221111 111111111 11     4568999999999999999999887777


Q ss_pred             HHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhH
Q 008827          359 RNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI  438 (552)
Q Consensus       359 ~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v  438 (552)
                      -.+...    ..+.+++..+++++..-+.+.++-++++++..+..++..-..   ..++..  ++..+.++-. ..+..+
T Consensus       355 ~~~i~~----Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~---~~Ln~E--llr~~ar~q~-d~~~~i  424 (690)
T KOG1243|consen  355 EKYIDH----LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK---RNLNGE--LLRYLARLQP-DEHGGI  424 (690)
T ss_pred             HHHhhh----cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch---hhhcHH--HHHHHHhhCc-cccCcc
Confidence            666543    334667777899999999999999999999888877643211   122212  5666665444 367788


Q ss_pred             HHHHHHHHHhhcCC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCC
Q 008827          439 EIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAG  517 (552)
Q Consensus       439 ~~~a~~~L~~la~~-~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g  517 (552)
                      +....-+|+.++.. .+..|+.+..           .+..+-++++-...|.++.+++......  ....+     +...
T Consensus       425 rtntticlgki~~~l~~~~R~~vL~-----------~aftralkdpf~paR~a~v~~l~at~~~--~~~~~-----va~k  486 (690)
T KOG1243|consen  425 RTNTTICLGKIAPHLAASVRKRVLA-----------SAFTRALKDPFVPARKAGVLALAATQEY--FDQSE-----VANK  486 (690)
T ss_pred             cccceeeecccccccchhhhccccc-----------hhhhhhhcCCCCCchhhhhHHHhhcccc--cchhh-----hhhh
Confidence            99988899988764 2223443332           3444567777788999999888765521  01111     2344


Q ss_pred             cHHHHHhhhcCCCccHHHHHHHHHHHHhhhcC
Q 008827          518 IVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD  549 (552)
Q Consensus       518 ~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~~  549 (552)
                      +++.+..+.-|++..+|..|..++..+..-.+
T Consensus       487 Ilp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~  518 (690)
T KOG1243|consen  487 ILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE  518 (690)
T ss_pred             ccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence            67888888888899999999999988776544

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.40  E-value=0.17  Score=52.74  Aligned_cols=103  Identities=20%  Similarity=0.213  Sum_probs=71.7

Q ss_pred             cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccc-CChHh
Q 008827          291 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL-AEDKC  369 (552)
Q Consensus       291 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-~~~~~  369 (552)
                      .+.+..+++...+++..||...+..|..+.......- .-+-.+....+..-+.+..+.||.+|+.+|+.+-.. .++++
T Consensus        84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eid-d~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~  162 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEID-DDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC  162 (892)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccC-HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc
Confidence            3555666666778899999999999998886433322 233356777788888888899999999999999531 12211


Q ss_pred             HHHHHHhhcHHHHHhhhc-CCChhHHHHHHHHH
Q 008827          370 KEEIFMELTASLLASLIC-DPEPSVQEQALALV  401 (552)
Q Consensus       370 ~~~i~~~~~~~~l~~ll~-~~~~~v~~~a~~~L  401 (552)
                             -+.+.+..+++ +++++|+..++..+
T Consensus       163 -------~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  163 -------PVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             -------cHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence                   24556666664 67888888776443

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.37  E-value=0.057  Score=56.90  Aligned_cols=217  Identities=15%  Similarity=0.120  Sum_probs=151.3

Q ss_pred             CCccHHHHHHHHhcCChhhHHHHHHHHH-HHhhhCCCcchhhhhHHhHHHHHHHhcCCCCc--hhchHHHHHHHhhcCCH
Q 008827          119 TGRTLSCIIEIVKDRFARTRLLASLCLI-VIRNASPCYLQDVGIKTKLINNLLELLDDPGR--VGDEASFAFSSLIAEKE  195 (552)
Q Consensus       119 ~~~~l~~l~~ll~~~~~~vr~~A~~~L~-~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~--v~~~a~~~L~~l~~~~~  195 (552)
                      ..++...++++.......-+..+.++|. .+...       .-.....++.+.+.+..+..  -..++..++.||++.+.
T Consensus       502 k~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-------~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~  574 (748)
T KOG4151|consen  502 KPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-------GERSYEVVKPLDSALHNDEKGLENFEALEALTNLASISE  574 (748)
T ss_pred             cccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-------CCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcch
Confidence            3678888899888888888888888887 22111       11223466666666653322  24688899999999888


Q ss_pred             HHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHh-cccHHHHHHhcCCCCHHHHHHHHHHHH
Q 008827          196 DMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS-LQVLKLVVDALAHDSSDVRSAACMCLR  274 (552)
Q Consensus       196 ~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~-~~~l~~lv~~L~~~~~~v~~~a~~~L~  274 (552)
                      ..+..+....+++.+-+++...  ++..+.+++..+.||...+.-+...+.+ ...+|.....+.........+++.++.
T Consensus       575 s~r~~i~ke~~~~~ie~~~~ee--~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a  652 (748)
T KOG4151|consen  575 SDRQKILKEKALGKIEELMTEE--NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALA  652 (748)
T ss_pred             hhHHHHHHHhcchhhHHHhhcc--cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhcccccc
Confidence            8877788887888877766554  4778899999999998765555555565 457888888888878888888888887


Q ss_pred             HhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc
Q 008827          275 SVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK  344 (552)
Q Consensus       275 ~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~  344 (552)
                      .++....+.|............++.++.++++++|......+.|+..........+.+...++.+..+-+
T Consensus       653 ~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~  722 (748)
T KOG4151|consen  653 AITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQK  722 (748)
T ss_pred             chhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            5654445544421334566778888999999999999999999865443344445555555555554443

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=96.36  E-value=1.9  Score=46.79  Aligned_cols=131  Identities=11%  Similarity=0.145  Sum_probs=87.8

Q ss_pred             hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhh
Q 008827          391 PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAEN  470 (552)
Q Consensus       391 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~  470 (552)
                      +.++.++.-+++++|..+.+..+.       .+|.|++-|+-+....++-+..-+++.++.     +..++.       .
T Consensus       945 ~~vra~~vvTlakmcLah~~LaKr-------~~P~lvkeLe~~~~~aiRnNiV~am~D~C~-----~YTam~-------d 1005 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLAKR-------LMPMLVKELEYNTAHAIRNNIVLAMGDICS-----SYTAMT-------D 1005 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHH-------HHHHHHHHHHhhhHHHHhcceeeeehhhHH-----HHHHHH-------H
Confidence            357777888888888765433222       578888877764555666666666666654     222332       4


Q ss_pred             hhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhc
Q 008827          471 KAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  548 (552)
Q Consensus       471 ~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~  548 (552)
                      .++|.+-..|.++++-+|+.+...|.+|...   +    ..+..-.=.+..+..+ -|.+++++.-|...+..+...-
T Consensus      1006 ~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~---~----~vKw~G~Lf~Rf~l~l-~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1006 RYIPMIAASLCDPSVIVRRQTIILLARLLQF---G----IVKWNGELFIRFMLAL-LDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred             HhhHHHHHHhcCchHHHHHHHHHHHHHHHhh---h----hhhcchhhHHHHHHHH-cccCHHHHHHHHHHHHHHHhhc
Confidence            6779999999999999999999999999841   1    1111111112233333 4678999999999998887654

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.35  E-value=0.012  Score=47.35  Aligned_cols=71  Identities=14%  Similarity=0.235  Sum_probs=58.0

Q ss_pred             hHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          422 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       422 ~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                      ++..|.++|..+.++.+..-||.-|+.++..-|..+. +++      +.|+-..++.++.++|++||.+|..++..+.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~-ii~------~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRN-IIE------KLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHH-HHH------HHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHH-HHH------hcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            7888889996657888899999999999987776555 444      3788899999999999999999999998776

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.31  E-value=0.13  Score=53.24  Aligned_cols=140  Identities=16%  Similarity=0.185  Sum_probs=78.0

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 008827          251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF  330 (552)
Q Consensus       251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  330 (552)
                      +..++.+..+++..||..|.+.|..+++..+..      -..+...|+++|+.+++.-...+-.+|..+....+.     
T Consensus        61 i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~------v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k-----  129 (556)
T PF05918_consen   61 INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEH------VSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK-----  129 (556)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-------HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH-----
T ss_pred             HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHH------HhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH-----
Confidence            455556666677889999999999998874332      235678899999999888888888888877653332     


Q ss_pred             HhhCcHHHHHHhhc---CCCHHHHHHHHHHHHHhcccCChH-hH-HHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHh
Q 008827          331 IRLGGVKLLVQLSK---SMDSTIRLNALRALRNLIFLAEDK-CK-EEIFMELTASLLASLICDPEPSVQEQALALVRNL  404 (552)
Q Consensus       331 ~~~g~i~~L~~ll~---~~~~~v~~~a~~aL~~l~~~~~~~-~~-~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l  404 (552)
                         +.+..+...+.   ++++.+|+.++..|..-.....++ .. ..-.+..++..+..+|.+...+--.-.+.+|+.+
T Consensus       130 ---~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~l  205 (556)
T PF05918_consen  130 ---GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSL  205 (556)
T ss_dssp             ---HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTS
T ss_pred             ---HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhC
Confidence               44455555444   567889999998886433321111 11 1223344445555555554443333344444444

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.30  E-value=1.7  Score=47.00  Aligned_cols=202  Identities=13%  Similarity=0.127  Sum_probs=123.9

Q ss_pred             ChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHH
Q 008827          220 HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR  299 (552)
Q Consensus       220 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~  299 (552)
                      .+.++..|+++++..|+-  ... .-...+++..+.++....+.++--.-..+|...+.-.+....  ..++.+.|....
T Consensus       504 ~~~~ki~a~~~~~~~~~~--~vl-~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a--s~~skI~P~~i~  578 (1005)
T KOG2274|consen  504 PPPVKISAVRAFCGYCKV--KVL-LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA--SMESKICPLTIN  578 (1005)
T ss_pred             CCchhHHHHHHHHhccCc--eec-cccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhh--hhhcchhHHHHH
Confidence            355778888888887731  111 112235677777777777777777777778777655333222  245566666666


Q ss_pred             hhc--CCCHHHHHHHHHHHHHhhc---CCchhHHHHHhhCcHHHHHHhhcCCC----HHHHHHHHHHHHHhcccCChHhH
Q 008827          300 LLD--DTSTAVQVAALGAISNIVV---DFTTRRSTFIRLGGVKLLVQLSKSMD----STIRLNALRALRNLIFLAEDKCK  370 (552)
Q Consensus       300 lL~--~~~~~v~~~a~~aL~nl~~---~~~~~~~~~~~~g~i~~L~~ll~~~~----~~v~~~a~~aL~~l~~~~~~~~~  370 (552)
                      +.-  ++||-+...+-..+-.+..   ..++.     ..-.+|.++..+..++    .....-++..|..+.++.++...
T Consensus       579 lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-----~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~  653 (1005)
T KOG2274|consen  579 LFLKYSEDPQVASLAQDLFEELLQIAANYGPM-----QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLP  653 (1005)
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCcc
Confidence            542  5677555555554444432   22222     2357899999988765    55666677888878787766655


Q ss_pred             HHHHHhhcHHHHHhh-hcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc----hHHHHHHHhcc
Q 008827          371 EEIFMELTASLLASL-ICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI----ILDAVGRQLRI  432 (552)
Q Consensus       371 ~~i~~~~~~~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~----~~~~l~~~L~~  432 (552)
                      ..+... .++.+.+. +.++|.....++-.+|+.+....+++...--.++|.    ++..+.++|+-
T Consensus       654 ~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp  719 (1005)
T KOG2274|consen  654 NLLICY-AFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDP  719 (1005)
T ss_pred             HHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCC
Confidence            555544 45555554 567778888899999999987765443332222331    56666666653

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.29  E-value=0.16  Score=54.45  Aligned_cols=249  Identities=18%  Similarity=0.122  Sum_probs=146.4

Q ss_pred             HHHHHHHHhhcCChhHHHHHHhccc-HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCC
Q 008827          226 GILLALADMCSKLECCRSRCLSLQV-LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT  304 (552)
Q Consensus       226 ~a~~aL~~l~~~~~~~~~~~~~~~~-l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~  304 (552)
                      ++.+.+.+++...+..+..+...+. -.-...+.  ++.+.+..|...+..+... --.|.. -....+...++.+|++ 
T Consensus       752 ~~~k~~~~~~~~~~~~~~l~~~~~vs~~~v~~y~--gs~dls~~al~~l~Wv~Ka-Ll~R~~-~~s~~ia~klld~Ls~-  826 (1030)
T KOG1967|consen  752 NALKTTANLKLKEEAIRQLFSAKFVSEKKVENYC--GSLDLSEIALTVLAWVTKA-LLLRNH-PESSEIAEKLLDLLSG-  826 (1030)
T ss_pred             cchhhhhhhhcccHHHHHHHHHHhhhhHhHhhcc--CCcchhhHHHHHHHHHHHH-HHHcCC-cccchHHHHHHHhcCC-
Confidence            3455555666555555433322111 11111122  3444455555554444322 011111 1223445667777765 


Q ss_pred             CHHHHHHHHHHHHHhhcCCchhH-------------HHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHH
Q 008827          305 STAVQVAALGAISNIVVDFTTRR-------------STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE  371 (552)
Q Consensus       305 ~~~v~~~a~~aL~nl~~~~~~~~-------------~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~  371 (552)
                       |++-..++.++.-+..+.+..+             +.+. ...+|.+++..+..+...+.+=+.+|.+...+.+   ++
T Consensus       827 -~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP---~~  901 (1030)
T KOG1967|consen  827 -PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVP---KQ  901 (1030)
T ss_pred             -ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCC---HH
Confidence             4566677777777666654432             2222 4688999998887777788888899998876543   23


Q ss_pred             HHHH--hhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhh-cCchHHHHHHHhcccCc---hhHHHHHHHH
Q 008827          372 EIFM--ELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAE-DGIILDAVGRQLRIASK---AEIEIQGMYV  445 (552)
Q Consensus       372 ~i~~--~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-~~~~~~~l~~~L~~~~~---~~v~~~a~~~  445 (552)
                      .+..  ....|.|++.|.-+|..++..++.++.-+..-.+.    ++.+ .+.+++.+..+=.+ ++   ..|++.|+.+
T Consensus       902 vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t----L~t~~~~Tlvp~lLsls~~-~~n~~~~VR~~ALqc  976 (1030)
T KOG1967|consen  902 VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET----LQTEHLSTLVPYLLSLSSD-NDNNMMVVREDALQC  976 (1030)
T ss_pred             hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc----cchHHHhHHHHHHHhcCCC-CCcchhHHHHHHHHH
Confidence            3332  23578889999999999999988888776543321    1111 12245555443223 33   4689999999


Q ss_pred             HHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHH
Q 008827          446 LGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVL  496 (552)
Q Consensus       446 L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~  496 (552)
                      |..++..-|..+-.-..       ..++..|.+.|.++...+|++|+.+=.
T Consensus       977 L~aL~~~~P~~~l~~fr-------~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  977 LNALTRRLPTKSLLSFR-------PLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred             HHHHhccCCCccccccc-------HHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence            99999844421111111       466788999999999999999986543

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.27  E-value=0.47  Score=50.95  Aligned_cols=271  Identities=12%  Similarity=0.081  Sum_probs=160.2

Q ss_pred             HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcH
Q 008827          129 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGV  207 (552)
Q Consensus       129 ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i  207 (552)
                      +..+..+.+|..|.+.++..++....    .-...+++..|+++... +.++-.-...+|+....-+++.. ...+....
T Consensus       499 l~~~~~~~~ki~a~~~~~~~~~~~vl----~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~  573 (1005)
T KOG2274|consen  499 LTMDVPPPVKISAVRAFCGYCKVKVL----LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKIC  573 (1005)
T ss_pred             hccCCCCchhHHHHHHHHhccCceec----cccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhh-hhhhcchh
Confidence            44577888888888887776643221    12346788888888874 45676777788888888887753 23345556


Q ss_pred             HHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCC----HHHHHHHHHHHHHhhcccccc
Q 008827          208 DKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS----SDVRSAACMCLRSVSRSIKNL  283 (552)
Q Consensus       208 ~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~----~~v~~~a~~~L~~ls~~~~~~  283 (552)
                      |.++.++...+.+|.+...+-..+..++.. ..+...+ ..-.+|.++..|..+.    +.....+...|..+-+..++.
T Consensus       574 P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~p  651 (1005)
T KOG2274|consen  574 PLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP  651 (1005)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC
Confidence            777776655556787766666666666542 1221111 2247999999998665    678888888888776654432


Q ss_pred             cchhhhccCcHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcH------HHHHHhhcCCCHHHHHHHHH
Q 008827          284 SAGSFMNETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGV------KLLVQLSKSMDSTIRLNALR  356 (552)
Q Consensus       284 ~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i------~~L~~ll~~~~~~v~~~a~~  356 (552)
                      -.. ..-.-+.|++.+.. .++|.++...+..+|+.+.....+........++.      ..+-++|.-.   +-..++.
T Consensus       652 L~~-~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~---~sds~a~  727 (1005)
T KOG2274|consen  652 LPN-LLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPE---TSDSAAA  727 (1005)
T ss_pred             ccH-HHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCc---cchhHHH
Confidence            222 23345567777765 46788999999999998886544332223333332      2333444322   1222222


Q ss_pred             HHHHhc----ccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcch
Q 008827          357 ALRNLI----FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS  411 (552)
Q Consensus       357 aL~~l~----~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  411 (552)
                      ..+.+.    ...+.+.. .-++......+.++-......+..+-+.++.++...+.+.
T Consensus       728 ~VG~lV~tLit~a~~el~-~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~  785 (1005)
T KOG2274|consen  728 FVGPLVLTLITHASSELG-PNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQ  785 (1005)
T ss_pred             HHhHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHH
Confidence            233221    11111100 0001111233445555677788888888899998877654

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.25  E-value=0.27  Score=51.45  Aligned_cols=128  Identities=15%  Similarity=0.167  Sum_probs=81.3

Q ss_pred             HHHHHhhhcCCChhHHHHHHHHHHHh--hcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhh
Q 008827          379 ASLLASLICDPEPSVQEQALALVRNL--VDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESH  456 (552)
Q Consensus       379 ~~~l~~ll~~~~~~v~~~a~~~L~~l--~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~  456 (552)
                      =+.+-+++.+.|+-++...+..+.--  ..++..           ++..|...=-+..+..|++.|..+|+.+...+++.
T Consensus       521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnk-----------air~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~  589 (929)
T KOG2062|consen  521 DPLIKELLRDKDPILRYGGMYTLALAYVGTGNNK-----------AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ  589 (929)
T ss_pred             HHHHHHHhcCCchhhhhhhHHHHHHHHhccCchh-----------hHHHhhcccccccchHHHHHHHHHheeeEecChhh
Confidence            34556677777777776655444322  222222           34444443223488999999999999988766533


Q ss_pred             HHHHHHHhhHhhhhhhHHHHHHhhc-CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHH
Q 008827          457 KEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKL  535 (552)
Q Consensus       457 ~~~i~~~~~~~~~~~~v~~Lv~lL~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~  535 (552)
                                      .+..|.+|. |-|+.||-.++.+|+-.|.  .-|..+         ++..|..|..|+..=||.
T Consensus       590 ----------------~~s~V~lLses~N~HVRyGaA~ALGIaCA--GtG~~e---------Ai~lLepl~~D~~~fVRQ  642 (929)
T KOG2062|consen  590 ----------------LPSTVSLLSESYNPHVRYGAAMALGIACA--GTGLKE---------AINLLEPLTSDPVDFVRQ  642 (929)
T ss_pred             ----------------chHHHHHHhhhcChhhhhhHHHHHhhhhc--CCCcHH---------HHHHHhhhhcChHHHHHH
Confidence                            255667775 5689999999999997775  123222         244555566666666777


Q ss_pred             HHHHHHHHH
Q 008827          536 RVKTALEQF  544 (552)
Q Consensus       536 ~a~~al~~~  544 (552)
                      -|..|+..|
T Consensus       643 gAlIa~amI  651 (929)
T KOG2062|consen  643 GALIALAMI  651 (929)
T ss_pred             HHHHHHHHH
Confidence            777776544

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.21  E-value=0.0075  Score=35.94  Aligned_cols=30  Identities=30%  Similarity=0.574  Sum_probs=26.2

Q ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHhhcc
Q 008827          250 VLKLVVDALAHDSSDVRSAACMCLRSVSRS  279 (552)
Q Consensus       250 ~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~  279 (552)
                      ++|.++++++|++++||.+|+.+|..+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            479999999999999999999999998753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.19  E-value=0.0074  Score=35.99  Aligned_cols=29  Identities=31%  Similarity=0.413  Sum_probs=25.6

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 008827          293 IVIPLVRLLDDTSTAVQVAALGAISNIVV  321 (552)
Q Consensus       293 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~  321 (552)
                      ++|.++++++|++++||.+|+.+|++++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.16  E-value=1.5  Score=43.02  Aligned_cols=204  Identities=13%  Similarity=0.127  Sum_probs=137.4

Q ss_pred             HHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccc----hhhhc--cCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827          243 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA----GSFMN--ETIVIPLVRLLDDTSTAVQVAALGAI  316 (552)
Q Consensus       243 ~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~----~~~~~--~~~i~~Lv~lL~~~~~~v~~~a~~aL  316 (552)
                      ..+...+.++.++..|..-+.+.|+.++....++-+.....+.    .++..  ..++..|+..-  +++++-..+-..|
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~ml  147 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDML  147 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHH
Confidence            3455668899999999999999999999999998665332221    11111  12333333333  3556666777777


Q ss_pred             HHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHh---hcHHHHHhhhcCCChhH
Q 008827          317 SNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME---LTASLLASLICDPEPSV  393 (552)
Q Consensus       317 ~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~---~~~~~l~~ll~~~~~~v  393 (552)
                      ...+. ++...+.+++...+..+.++.+.++.++...|..++..+... .+..-.+.+..   ........+|.+++.-.
T Consensus       148 Rec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt  225 (335)
T PF08569_consen  148 RECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYVT  225 (335)
T ss_dssp             HHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred             HHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence            77665 455566888888889999999999999999999999987552 23333344433   24567788999999999


Q ss_pred             HHHHHHHHHHhhcCCcc---hHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCC
Q 008827          394 QEQALALVRNLVDGRIN---SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK  453 (552)
Q Consensus       394 ~~~a~~~L~~l~~~~~~---~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~  453 (552)
                      +.+++.+|+.+......   ...++=+..  -+..++.+|++ +...|+-.|..++--+.+.+
T Consensus       226 krqslkLL~ellldr~n~~vm~~yi~~~~--nLkl~M~lL~d-~sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  226 KRQSLKLLGELLLDRSNFNVMTRYISSPE--NLKLMMNLLRD-KSKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             HHHHHHHHHHHHHSGGGHHHHHHHTT-HH--HHHHHHHHTT--S-HHHHHHHHHHHHHHHH-S
T ss_pred             ehhhHHHHHHHHHchhHHHHHHHHHCCHH--HHHHHHHHhcC-cchhhhHHHHHHHHHHHhCC
Confidence            99999999999865321   112222222  46777788887 88889999999988777643

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.11  E-value=0.12  Score=50.04  Aligned_cols=162  Identities=12%  Similarity=0.044  Sum_probs=101.6

Q ss_pred             HhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhh---
Q 008827           84 SLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDV---  159 (552)
Q Consensus        84 ~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~---  159 (552)
                      ..+++ +..+|+.+++|||-.|--+....        ...++.+...++.++..+|..|.+++..+....+....+.   
T Consensus        34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a--------~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~  105 (298)
T PF12719_consen   34 PAVQSSDPAVRELALKCLGLCCLLDKELA--------KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD  105 (298)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhChHHH--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence            45555 67999999999999887665543        3456667777777899999999999999877543221111   


Q ss_pred             ----hhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHH-hCcHHHHHHhhhcCC--CChhhHHHHHHHH
Q 008827          160 ----GIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFE-VNGVDKLYNHLQKGS--LHPRRFEGILLAL  231 (552)
Q Consensus       160 ----~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~L~~~~--~~~~~~~~a~~aL  231 (552)
                          ......+..+.+.+. ++++++..|+..+++|.-.+.-     .+ ...+..|+-..-++.  .++.+|+.-...+
T Consensus       106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i-----~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ff  180 (298)
T PF12719_consen  106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI-----SDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFF  180 (298)
T ss_pred             cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC-----CcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHH
Confidence                223567888888887 5568899999999887643211     11 233444443333322  2245555555566


Q ss_pred             HHhhcCChhHHHHHHhcccHHHHHHhcC
Q 008827          232 ADMCSKLECCRSRCLSLQVLKLVVDALA  259 (552)
Q Consensus       232 ~~l~~~~~~~~~~~~~~~~l~~lv~~L~  259 (552)
                      -..+..++..+ ......++|.+-.+.+
T Consensus       181 p~y~~s~~~~Q-~~l~~~f~~~l~~~~~  207 (298)
T PF12719_consen  181 PVYASSSPENQ-ERLAEAFLPTLRTLSN  207 (298)
T ss_pred             HHHHcCCHHHH-HHHHHHHHHHHHHHHh
Confidence            66666554443 3444455666555554

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.09  E-value=0.017  Score=46.48  Aligned_cols=72  Identities=24%  Similarity=0.391  Sum_probs=60.3

Q ss_pred             cCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827          291 ETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI  362 (552)
Q Consensus       291 ~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  362 (552)
                      ..++..|+++|. +.|+.+...||.=|+.++...+..+..+-+.|+=..+++++.++|++||.+|+.++..+.
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            356888999995 458899999999999999988888877777788899999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.09  E-value=3.7  Score=47.04  Aligned_cols=110  Identities=21%  Similarity=0.238  Sum_probs=69.8

Q ss_pred             cCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCC
Q 008827           76 AGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC  154 (552)
Q Consensus        76 ~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~  154 (552)
                      .+.+..++..|.. ...+|..|++||..+..-++.+.-      .......+-.-+.|....||.+|+..++.+.-..++
T Consensus       815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~------~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e  888 (1692)
T KOG1020|consen  815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS------RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE  888 (1692)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc------CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH
Confidence            3556677777775 468999999999999877766531      133445556677888999999999999876654332


Q ss_pred             cchhhhhHHhHHHHHHH-hcCCCCchhchHHHHHHHhhcCCHHH
Q 008827          155 YLQDVGIKTKLINNLLE-LLDDPGRVGDEASFAFSSLIAEKEDM  197 (552)
Q Consensus       155 ~~~~~~~~~g~i~~Lv~-ll~~~~~v~~~a~~~L~~l~~~~~~~  197 (552)
                      .     +. ..-..+.+ +++.+..||..+...+..+....|.+
T Consensus       889 ~-----~~-qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf  926 (1692)
T KOG1020|consen  889 L-----IF-QYYDQIIERILDTGVSVRKRVIKILRDICEETPDF  926 (1692)
T ss_pred             H-----HH-HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh
Confidence            1     10 11112222 22234456777777777766655544

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.07  E-value=1.3  Score=43.45  Aligned_cols=203  Identities=11%  Similarity=0.134  Sum_probs=136.7

Q ss_pred             HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH-----HHHHHhc--ccHHHHHHhcCCCCHHHHHHHHH
Q 008827          199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC-----RSRCLSL--QVLKLVVDALAHDSSDVRSAACM  271 (552)
Q Consensus       199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~-----~~~~~~~--~~l~~lv~~L~~~~~~v~~~a~~  271 (552)
                      ..++..+.+..|+..|..-+  .+.|..+...+.++.......     ...+...  .++..++..-+  ++++-..+-.
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~--fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~  145 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLD--FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGD  145 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS---HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCC--CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHH
Confidence            34566788889998887753  667778887777776643222     2223222  34555555444  4455556666


Q ss_pred             HHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhC---cHHHHHHhhcCCCH
Q 008827          272 CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG---GVKLLVQLSKSMDS  348 (552)
Q Consensus       272 ~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g---~i~~L~~ll~~~~~  348 (552)
                      .|+...+. +.+.+. +.....+..+.+..+.++-++...|..++..+...+......++..+   ....+..++.++|-
T Consensus       146 mlRec~k~-e~l~~~-iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY  223 (335)
T PF08569_consen  146 MLRECIKH-ESLAKI-ILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNY  223 (335)
T ss_dssp             HHHHHTTS-HHHHHH-HHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSH
T ss_pred             HHHHHHhh-HHHHHH-HhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCe
Confidence            77777776 555555 66677888899999999999999999999987766655544555543   55677789999999


Q ss_pred             HHHHHHHHHHHHhcccCCh-Hh-HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827          349 TIRLNALRALRNLIFLAED-KC-KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  407 (552)
Q Consensus       349 ~v~~~a~~aL~~l~~~~~~-~~-~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  407 (552)
                      -+|.+++..|+.+...... .. ...+-+..-+..+..+|++.+..+|..|..++--+..+
T Consensus       224 vtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  224 VTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             HHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred             EeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence            9999999999998753221 11 12233345678888999999999999999888777655

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.06  E-value=0.053  Score=59.44  Aligned_cols=161  Identities=13%  Similarity=0.145  Sum_probs=121.2

Q ss_pred             HhHHHHHHHhcCC-----CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC
Q 008827          163 TKLINNLLELLDD-----PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK  237 (552)
Q Consensus       163 ~g~i~~Lv~ll~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~  237 (552)
                      ..+.|.+++.++.     +++++..|.-+|+++..-+..+.     ...+|.|+..+... +.|.+|.+++-+++.++.-
T Consensus       918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeks-p~p~IRsN~VvalgDlav~  991 (1251)
T KOG0414|consen  918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKS-PSPRIRSNLVVALGDLAVR  991 (1251)
T ss_pred             HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcC-CCceeeecchheccchhhh
Confidence            4478888888862     35689999999999987665543     34588999988866 4688999999999998764


Q ss_pred             ChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 008827          238 LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAIS  317 (552)
Q Consensus       238 ~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~  317 (552)
                      -+..-+     ..-+.+...|++.++.||+.|...+..|-.. +.     +.-.|.++.+...+.|++++++.-|-....
T Consensus       992 fpnlie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-dm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen  992 FPNLIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILN-DM-----IKVKGQLSEMALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred             cccccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-hh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            333322     2467788899999999999999999999765 22     345699999999999999999998888887


Q ss_pred             HhhcCCchhHHHHHhhCcHHHHHHhhcCC
Q 008827          318 NIVVDFTTRRSTFIRLGGVKLLVQLSKSM  346 (552)
Q Consensus       318 nl~~~~~~~~~~~~~~g~i~~L~~ll~~~  346 (552)
                      .|+....    .+.  +.+|-++.-|.++
T Consensus      1061 Els~k~n----~iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1061 ELSSKGN----TIY--NLLPDILSRLSNG 1083 (1251)
T ss_pred             Hhhhccc----chh--hhchHHHHhhccC
Confidence            7775321    222  5666666666655

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.03  E-value=0.48  Score=50.57  Aligned_cols=229  Identities=13%  Similarity=0.142  Sum_probs=142.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 008827          251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF  330 (552)
Q Consensus       251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  330 (552)
                      +...+..+.++-+.+|-.+...++.+.+.. .-+.. +...+++......|++.|+-+--+|...+..|+.-++      
T Consensus       729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~-~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~------  800 (982)
T KOG4653|consen  729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATL-IQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP------  800 (982)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhh-hhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc------
Confidence            555666777888899999999999998752 23333 5678999999999999999898899887777775433      


Q ss_pred             HhhCcHHHHHHh-hcCCC---HHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhc
Q 008827          331 IRLGGVKLLVQL-SKSMD---STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD  406 (552)
Q Consensus       331 ~~~g~i~~L~~l-l~~~~---~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  406 (552)
                        ..++|.+.+. ....+   .+.+...=.++.++....++ .-....+ -.+...+..++++|...+..++..++++|.
T Consensus       801 --e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Ge-l~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq  876 (982)
T KOG4653|consen  801 --EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGE-LVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQ  876 (982)
T ss_pred             --hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhcc-HHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence              4567777763 33221   22233333455555443221 1112222 345556667788888889999999999985


Q ss_pred             CCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-CCCh
Q 008827          407 GRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDS  485 (552)
Q Consensus       407 ~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~-~~~~  485 (552)
                      ...-.....+.+   ++..+..+....+.+-++++|...+..+-.|.....-.+...+    .-+...-+..+.+ +++.
T Consensus       877 ~~a~~vsd~~~e---v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~----l~Dl~~tl~~~vr~~~dd  949 (982)
T KOG4653|consen  877 LLAFQVSDFFHE---VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLL----LIDLDETLLSYVRQHDDD  949 (982)
T ss_pred             HHhhhhhHHHHH---HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHH----HHHHHHHHHHHHhcCchh
Confidence            533223334433   4566666666667888999999999988876542222222100    0122223333333 3455


Q ss_pred             hHHHHHHHHHHhh
Q 008827          486 RLRTAAVWAVLNL  498 (552)
Q Consensus       486 ~~~~~a~~~l~~l  498 (552)
                      .++..|+.++-.+
T Consensus       950 ~~klhaql~leei  962 (982)
T KOG4653|consen  950 GLKLHAQLCLEEI  962 (982)
T ss_pred             HHHHHHHHHHHHH
Confidence            6777777666444

>PRK14707 hypothetical protein; Provisional

Probab=96.02  E-value=4.9  Score=47.80  Aligned_cols=461  Identities=15%  Similarity=0.066  Sum_probs=233.0

Q ss_pred             HHHHHHHHHHcCCCCCCcccccc--cchHHHHHhhcC--CCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC
Q 008827           13 AGARSLKMIYQSKMAPKYDFLQE--ENMEFLLSLLNN--ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG   88 (552)
Q Consensus        13 ~~l~~l~~l~~~~~~~~~~~~~~--~~i~~l~~ll~~--~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~   88 (552)
                      +|++++.+|.--.-.+ .++..-  .-...|.-.|+.  .++...+.++-|-.++-..+.-+..+ ...-+..++.-.+.
T Consensus        97 ac~~a~~wia~~~~~~-~~~~~l~~~~~al~~n~~sk~~~~~~c~~a~a~i~~~~~~~~~~~~~l-~~~~~~lllNafSK  174 (2710)
T PRK14707         97 ACMEAIAWIAGELTQA-DDLVGLGGYPSALFLNAFSKNLDSGRCERAVARLARHLRREDKARQTL-NAQNISLALNAFSK  174 (2710)
T ss_pred             HHHHHHHHHHHhhcCc-chhhhccchhHHHHHHHHhcCCCchHHHHHHHHHHHHhccccchhhhh-ccccHHHHHHHhhc
Confidence            6888888885333333 344322  223445555542  22333444444444443222211111 11123444444442


Q ss_pred             ---CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHH-Hhc-CChhhHHHHHHHHHHHhhhCCCcchhhhhHH
Q 008827           89 ---SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEI-VKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKT  163 (552)
Q Consensus        89 ---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~l-l~~-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~  163 (552)
                         +...+..+...-..++.++ .....+    +...|..++.. .+- +++..|.+|...-..++... . ....+-..
T Consensus       175 w~~~~~c~~aa~~la~~~~~~d-~~~~~~----~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~-~-l~~~~~~q  247 (2710)
T PRK14707        175 WSDNPDCQAVAPRFAALVASDD-RLRSAM----DAQGVATVLNALCKWPDTPDCGNAVSALAERLADES-R-LRNELKPQ  247 (2710)
T ss_pred             CCCCchHHHHHHHHHHHhcCCh-hhhccc----chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcH-H-HHHhCChH
Confidence               3455555555555555543 333333    35667776664 443 45555655544444444432 1 12222223


Q ss_pred             hHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHH
Q 008827          164 KLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR  242 (552)
Q Consensus       164 g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~  242 (552)
                      |+--.|..+.+- +..+...++.+++.=..+++..+ ...+...+...++-|..= ++..+...+...|..=..+++..+
T Consensus       248 ~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~-~al~~q~vanalNalSKw-pd~~vc~~Aa~~la~rl~~d~~l~  325 (2710)
T PRK14707        248 ELGNALNALSKWADTPVCAAAASALAERLVDDPGLR-KALDPINVTQALNALSKW-ADLPVCAEAAIALAERLADDPELC  325 (2710)
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHH-HhcCHHHHHHHHhhhhcC-CCchHHHHHHHHHHHHHhccHhhh
Confidence            444444444443 34466667666664333444443 233444455555555443 234444445545544334566666


Q ss_pred             HHHHhcccHHHHHHhcC-CCCHHHHHHHHHHHH-HhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHh
Q 008827          243 SRCLSLQVLKLVVDALA-HDSSDVRSAACMCLR-SVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNI  319 (552)
Q Consensus       243 ~~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L~-~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl  319 (552)
                      +.+-.. .+...+..|+ =++..++..|+..|. .+... ..++..  .+...+..++.-|+ =++......|+.+|..-
T Consensus       326 ~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d-~~l~~~--l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~  401 (2710)
T PRK14707        326 KALNAR-GLSTALNALSKWPDNPVCAAAVSALAERLVAD-PELRKD--LEPQGVSSVLNALSKWPDTPVCAAAASALAEH  401 (2710)
T ss_pred             hccchH-HHHHHHHHhhcCCCchhHHHHHHHHHHHhccC-Hhhhcc--cchhHHHHHHhhhhcCCCchHHHHHHHHHHHH
Confidence            544333 3444445444 355556555555544 55555 566665  34444555555554 46666777777777766


Q ss_pred             hcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHH
Q 008827          320 VVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALA  399 (552)
Q Consensus       320 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~  399 (552)
                      ..+....++.+--.|+-..|-.+.+=++..+...+..+|..-.. .+++.++.+--.++...|-.+-+.+|..+-.++..
T Consensus       402 l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la-~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~  480 (2710)
T PRK14707        402 VVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLA-HDTELCKALDPINVTQALDALSKWPDTPICGQTAS  480 (2710)
T ss_pred             hccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHh-ccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHH
Confidence            55666667666655666666666666777777777777765433 24455544444445555666667888877777776


Q ss_pred             HHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCc-hhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHH
Q 008827          400 LVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK-AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIK  478 (552)
Q Consensus       400 ~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~-~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~  478 (552)
                      .|.--...+++. ..-|.... +...| .-|+..++ +...+.+.|+-+.+..... ..+.+-.       .++...+-.
T Consensus       481 ~La~~l~~~~~l-~~a~~~q~-~~~~L-~aLSK~Pd~~~c~~A~~~lA~rl~~~~~-l~~~~~~-------~~~~~~lna  549 (2710)
T PRK14707        481 ALAARLAHERRL-RKALKPQE-VVIAL-HSLSKWPDTPICAEAASALAERVVDELQ-LRKAFDA-------HQVVNTLKA  549 (2710)
T ss_pred             HHHHHhcccHHH-HhhcCHHH-HHHHH-HHhhcCCCcHHHHHHHHHHHHHhccchh-hhhhhhh-------HHHHHHHHh
Confidence            665544443332 22222110 12222 22333244 3345556666666653221 2222211       344344444


Q ss_pred             hhcCCChhHHHHHHHHHHhhcC
Q 008827          479 FLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       479 lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      +-+.++...+..++..|..+..
T Consensus       550 lSKwp~s~~C~~A~~~iA~~l~  571 (2710)
T PRK14707        550 LSKWPDKQLCAVAASGLAERLA  571 (2710)
T ss_pred             hhcCCchhHHHHHHHHHHHHhh
Confidence            5456777788888878877654

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.95  E-value=0.061  Score=59.01  Aligned_cols=132  Identities=15%  Similarity=0.140  Sum_probs=103.0

Q ss_pred             HHHHHhhhc----CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCCh
Q 008827          379 ASLLASLIC----DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE  454 (552)
Q Consensus       379 ~~~l~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~  454 (552)
                      .|.++.+.+    ..+|++|..|.-+|+.+..-+..    ..+.   -++.|...|+.++++-|+.++.-+++.++-..+
T Consensus       921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fces---~l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCES---HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHHH---HHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            455555553    46799999999999988754321    2222   478888899877999999999999999998766


Q ss_pred             hhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHH
Q 008827          455 SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVK  534 (552)
Q Consensus       455 ~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~  534 (552)
                      ...+            .+-+.|...|++.++.||+.|..++++|..+         ..+.-.|.+..+...+.|+++.++
T Consensus       994 nlie------------~~T~~Ly~rL~D~~~~vRkta~lvlshLILn---------dmiKVKGql~eMA~cl~D~~~~Is 1052 (1251)
T KOG0414|consen  994 NLIE------------PWTEHLYRRLRDESPSVRKTALLVLSHLILN---------DMIKVKGQLSEMALCLEDPNAEIS 1052 (1251)
T ss_pred             cccc------------hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh---------hhhHhcccHHHHHHHhcCCcHHHH
Confidence            4433            2336889999999999999999999999962         234456888899999999999988


Q ss_pred             HHHH
Q 008827          535 LRVK  538 (552)
Q Consensus       535 ~~a~  538 (552)
                      +-|.
T Consensus      1053 dlAk 1056 (1251)
T KOG0414|consen 1053 DLAK 1056 (1251)
T ss_pred             HHHH
Confidence            8876

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.91  E-value=0.14  Score=51.86  Aligned_cols=156  Identities=15%  Similarity=0.124  Sum_probs=99.4

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhh-hcCCChhHHHHHHHHHHHhhcCCcchHHHHHh
Q 008827          339 LVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL-ICDPEPSVQEQALALVRNLVDGRINSVEYIFA  417 (552)
Q Consensus       339 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~  417 (552)
                      +-+++.+.++-.|.+.+.+++---.+..        ..+++..++.. ..+.+.+|++.|.-+|+-+|+.+++       
T Consensus       521 I~ell~d~ds~lRy~G~fs~alAy~GTg--------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~-------  585 (926)
T COG5116         521 INELLYDKDSILRYNGVFSLALAYVGTG--------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD-------  585 (926)
T ss_pred             HHHHhcCchHHhhhccHHHHHHHHhcCC--------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc-------
Confidence            3345555666666666655542211111        12345556665 6788999999999999999998875       


Q ss_pred             hcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHh
Q 008827          418 EDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLN  497 (552)
Q Consensus       418 ~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~  497 (552)
                          .+.-.+++|..+.++.|+...+.+|+-.++|+-+..              ....|-.++.+++.-||..|+.+++.
T Consensus       586 ----~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~--------------a~diL~~L~~D~~dfVRQ~AmIa~~m  647 (926)
T COG5116         586 ----LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV--------------ATDILEALMYDTNDFVRQSAMIAVGM  647 (926)
T ss_pred             ----hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH--------------HHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence                344455666666899999999999997776554211              12455667788888999999999988


Q ss_pred             hcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCcc
Q 008827          498 LTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLD  532 (552)
Q Consensus       498 l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~  532 (552)
                      +..-..+.-..+     -.++++.+.+++.+..++
T Consensus       648 Il~Q~n~~Lnp~-----v~~I~k~f~~vI~~Khe~  677 (926)
T COG5116         648 ILMQCNPELNPN-----VKRIIKKFNRVIVDKHES  677 (926)
T ss_pred             HHhhcCcccChh-----HHHHHHHHHHHHhhhhHh
Confidence            874211111111     124566777766544433

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.87  E-value=1.4  Score=40.20  Aligned_cols=141  Identities=12%  Similarity=0.128  Sum_probs=98.8

Q ss_pred             HHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHh
Q 008827          310 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-----MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS  384 (552)
Q Consensus       310 ~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~  384 (552)
                      .+|...+-.++ ..++-+..+.++..=-.+..++..     +.+..|..+++.++.+...++.+....++...+++..++
T Consensus        97 cnaL~LlQcvA-SHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr  175 (293)
T KOG3036|consen   97 CNALALLQCVA-SHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR  175 (293)
T ss_pred             HHHHHHHHHHh-cCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence            34444443444 456667677777654455555543     457799999999999999888888888889999999999


Q ss_pred             hhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhh------cCchHHHHHHHhcccCchhHHHHHHHHHHhhcCC
Q 008827          385 LICDPEPSVQEQALALVRNLVDGRINSVEYIFAE------DGIILDAVGRQLRIASKAEIEIQGMYVLGNVATG  452 (552)
Q Consensus       385 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~------~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~  452 (552)
                      .+..+++.-+.-|..++..+..++. ...|+...      .+.++..++..+.+.+++....+++.+..+++..
T Consensus       176 ime~GSelSKtvA~fIlqKIlldD~-GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  176 IMESGSELSKTVATFILQKILLDDV-GLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHhcccHHHHHHHHHHHHHHhhccc-cHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999886653 34444332      1113444444444447777777788887777753

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.86  E-value=0.86  Score=44.23  Aligned_cols=172  Identities=13%  Similarity=0.103  Sum_probs=109.6

Q ss_pred             CcHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhH
Q 008827          292 TIVIPLV-RLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCK  370 (552)
Q Consensus       292 ~~i~~Lv-~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  370 (552)
                      +.+..++ ..++++++.+|+.|..+|+-.+.-.....     ...++.+...++.+++.++..|+.++..+...-+...-
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            4455544 56788999999999999997775443221     13456677777777999999999999887542221111


Q ss_pred             H-------HHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchH-HHHHhhcCchHHHHHH-Hhcc--cCchhHH
Q 008827          371 E-------EIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV-EYIFAEDGIILDAVGR-QLRI--ASKAEIE  439 (552)
Q Consensus       371 ~-------~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~~~~~~~~l~~-~L~~--~~~~~v~  439 (552)
                      .       ..........+.+.+.+.+++++..++..+..|.-.+.-.- ..       ++..|+- .++.  ..++..+
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~-------vL~~Lll~yF~p~t~~~~~Lr  173 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPK-------VLSRLLLLYFNPSTEDNQRLR  173 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHH-------HHHHHHHHHcCcccCCcHHHH
Confidence            1       12234567788888999999999999999999875532111 22       2333322 2221  2345666


Q ss_pred             HHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC
Q 008827          440 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN  483 (552)
Q Consensus       440 ~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~  483 (552)
                      ..-.+.+-.++..++.+...+ .       ..+++.+-.+.+..
T Consensus       174 Q~L~~Ffp~y~~s~~~~Q~~l-~-------~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  174 QCLSVFFPVYASSSPENQERL-A-------EAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHHHcCCHHHHHHH-H-------HHHHHHHHHHHhCc
Confidence            666667777777666554444 3       46667777766543

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.80  E-value=1.5  Score=43.78  Aligned_cols=239  Identities=18%  Similarity=0.179  Sum_probs=127.9

Q ss_pred             HHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCC-CH-HHHHHHHHHHHHhhccccccc
Q 008827          207 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD-SS-DVRSAACMCLRSVSRSIKNLS  284 (552)
Q Consensus       207 i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~-~~-~v~~~a~~~L~~ls~~~~~~~  284 (552)
                      +.-+++-|... .+..+|..++..|+.-|. ++..|..+..+|..+.+.+.+.+. +. ..-..++.++.-+++......
T Consensus        23 v~ylld~l~~~-~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESS-SSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMH  100 (361)
T ss_pred             HHHHHhhcccC-CCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchh
Confidence            44555556633 346678888888888775 678999999999999999999643 33 333444444455555422211


Q ss_pred             chhhhccCcHHHHHHhhc-CCC----HHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhh---c------CCCHHH
Q 008827          285 AGSFMNETIVIPLVRLLD-DTS----TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS---K------SMDSTI  350 (552)
Q Consensus       285 ~~~~~~~~~i~~Lv~lL~-~~~----~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll---~------~~~~~v  350 (552)
                       . +.+.+....+++++. +..    ......-...+..       ..     .+.+..+.+..   .      .....-
T Consensus       101 -l-~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk-------~~-----~~~~~~~~~~~~~~~~~~~~~~~~lsp  166 (361)
T PF07814_consen  101 -L-LLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSK-------VQ-----QKSRSLCKELLSSGSSWKSPKPPELSP  166 (361)
T ss_pred             -h-hhchhHHHHHHHHhccccccccccchhhhhhhhhhH-------HH-----HHHHHHHHHHHhccccccccCCccccc
Confidence             1 234556666677776 110    0000000011100       00     01111111111   0      112223


Q ss_pred             HHHHHHHHHHhcc-------------cCChHhHHHHHHhhcHHHHHhhhcC----C-------C-----hhHHHHHHHHH
Q 008827          351 RLNALRALRNLIF-------------LAEDKCKEEIFMELTASLLASLICD----P-------E-----PSVQEQALALV  401 (552)
Q Consensus       351 ~~~a~~aL~~l~~-------------~~~~~~~~~i~~~~~~~~l~~ll~~----~-------~-----~~v~~~a~~~L  401 (552)
                      +.-|+.++-.++.             ......|+++.+.|++++++..+.+    .       +     ......++++|
T Consensus       167 ~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~IL  246 (361)
T PF07814_consen  167 QTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSIL  246 (361)
T ss_pred             ccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHH
Confidence            3444444444420             0111247788888999999998751    1       1     12445688888


Q ss_pred             HHhhcCCcchHHHHHhhcC-chHHHHHHHhccc--CchhHHHHHHHHHHhhcCCChhhHHHHH
Q 008827          402 RNLVDGRINSVEYIFAEDG-IILDAVGRQLRIA--SKAEIEIQGMYVLGNVATGKESHKEAVM  461 (552)
Q Consensus       402 ~~l~~~~~~~~~~i~~~~~-~~~~~l~~~L~~~--~~~~v~~~a~~~L~~la~~~~~~~~~i~  461 (552)
                      -|.+....++..+.....+ .....+..++...  ........++..+.|++..++...+.+-
T Consensus       247 Es~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~  309 (361)
T PF07814_consen  247 ESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFA  309 (361)
T ss_pred             HHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhh
Confidence            8888776666666665532 1222222222220  2234467889999999998865555443

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.75  E-value=0.081  Score=45.73  Aligned_cols=149  Identities=22%  Similarity=0.218  Sum_probs=96.3

Q ss_pred             cHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccc
Q 008827          206 GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA  285 (552)
Q Consensus       206 ~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~  285 (552)
                      .+..++..|.....++++|..+.-++..+-   +..++.. ..-+-+.+-..+..++.+-...+..++..+=...+..+.
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence            345566656541134678888888888873   2222222 222344455555555555666677777766554455555


Q ss_pred             hhhhccCcHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc-CCCHH-HHHHHHHHHHH
Q 008827          286 GSFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDST-IRLNALRALRN  360 (552)
Q Consensus       286 ~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~-v~~~a~~aL~~  360 (552)
                      ..+...|+++.++.++.  ..+..++..++.+|..-+ ....+|. .+...+++.|-++.+ ++++. +|..|+-.|+.
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRT-FISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHH-HHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            54567899999999998  788999999999996555 4555554 444678899999985 45566 78888777654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.69  E-value=0.82  Score=48.94  Aligned_cols=214  Identities=18%  Similarity=0.122  Sum_probs=128.9

Q ss_pred             hhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHh
Q 008827          221 PRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL  300 (552)
Q Consensus       221 ~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l  300 (552)
                      +.++-.++..+..+..+- .-...+...+++...+..+++.++-|-..+...+..|+.-         ....++|.+...
T Consensus       741 vpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev---------y~e~il~dL~e~  810 (982)
T KOG4653|consen  741 VPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV---------YPEDILPDLSEE  810 (982)
T ss_pred             ccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh---------cchhhHHHHHHH
Confidence            557888999999988632 3334566778999999999999998988888877777653         456778888884


Q ss_pred             h-cC---CCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHh
Q 008827          301 L-DD---TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME  376 (552)
Q Consensus       301 L-~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~  376 (552)
                      - +.   ..++.+...-.++.+++..-++.-..... -.+..++....+++...|..++.+++++|.-..-.... .+.+
T Consensus       811 Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~e  888 (982)
T KOG4653|consen  811 YLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHE  888 (982)
T ss_pred             HHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHH
Confidence            3 32   11233333335666655433332222222 45667777778888889999999999997632211111 2211


Q ss_pred             hcHHHHHhhhc-CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc-hHHHHHHHhcccCchhHHHHHHHHHH
Q 008827          377 LTASLLASLIC-DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI-ILDAVGRQLRIASKAEIEIQGMYVLG  447 (552)
Q Consensus       377 ~~~~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~-~~~~l~~~L~~~~~~~v~~~a~~~L~  447 (552)
                       ....++.+.+ ++++-+++.|+.++..+..+.....-.+.+..-. ....+.+....++++.++..++-++-
T Consensus       889 -v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le  960 (982)
T KOG4653|consen  889 -VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE  960 (982)
T ss_pred             -HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence             2333444443 6677899999999999987643222222221100 22333333444455555555555443

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.36  E-value=6.1  Score=44.24  Aligned_cols=227  Identities=14%  Similarity=0.154  Sum_probs=134.8

Q ss_pred             CCCCHHHHHHHHHHHHHhhcccccccchhhhc---cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCc
Q 008827          259 AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMN---ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG  335 (552)
Q Consensus       259 ~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~---~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~  335 (552)
                      ++.+..+|..+-..|..++...+  ... +.+   ..+...|.+-+++.+...+..++.+|..+....+..-..++...+
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~~s--~~~-~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I  740 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSSPS--GEG-LVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLI  740 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcCCc--hhh-HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            35588999999999999987621  111 111   123334444555667788888888888887655522223343334


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcc--c--CChHhH-HHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc
Q 008827          336 VKLLVQLSKSMDSTIRLNALRALRNLIF--L--AEDKCK-EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN  410 (552)
Q Consensus       336 i~~L~~ll~~~~~~v~~~a~~aL~~l~~--~--~~~~~~-~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~  410 (552)
                      .+.++.+ +..|...|+++...|..++.  .  .+-+.+ ...+++ .+..|...+..+.+.+....+-+++.+......
T Consensus       741 ~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne-fl~~Isagl~gd~~~~~as~Ivai~~il~e~~~  818 (1176)
T KOG1248|consen  741 PEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE-FLSIISAGLVGDSTRVVASDIVAITHILQEFKN  818 (1176)
T ss_pred             HHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH-HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence            4444444 77788889988888887761  0  000111 223332 233333333344444444334455554422111


Q ss_pred             hHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHH
Q 008827          411 SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTA  490 (552)
Q Consensus       411 ~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~  490 (552)
                      .....+-+.  +++.+...|.+ +++++...|+..+.-+....+...   +..    +...+++.+..++++....+|..
T Consensus       819 ~ld~~~l~~--li~~V~~~L~s-~sreI~kaAI~fikvlv~~~pe~~---l~~----~~~~LL~sll~ls~d~k~~~r~K  888 (1176)
T KOG1248|consen  819 ILDDETLEK--LISMVCLYLAS-NSREIAKAAIGFIKVLVYKFPEEC---LSP----HLEELLPSLLALSHDHKIKVRKK  888 (1176)
T ss_pred             cccHHHHHH--HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHcCCHHH---Hhh----hHHHHHHHHHHHHHhhhHHHHHH
Confidence            111111111  56667677777 899999999999998888766322   221    12457788888888888899999


Q ss_pred             HHHHHHhhcC
Q 008827          491 AVWAVLNLTC  500 (552)
Q Consensus       491 a~~~l~~l~~  500 (552)
                      .-..+-.|+.
T Consensus       889 vr~LlekLir  898 (1176)
T KOG1248|consen  889 VRLLLEKLIR  898 (1176)
T ss_pred             HHHHHHHHHH
Confidence            9888888874

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.22  E-value=2  Score=43.73  Aligned_cols=162  Identities=14%  Similarity=0.149  Sum_probs=113.8

Q ss_pred             HHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCH----HHHHHHHHHHHHhhccccccc
Q 008827          209 KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS----DVRSAACMCLRSVSRSIKNLS  284 (552)
Q Consensus       209 ~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~----~v~~~a~~~L~~ls~~~~~~~  284 (552)
                      .+.+.+.+++  ..-+..++..+..++. +......+....++..+..++.++..    .+......++..+-.. ....
T Consensus        87 ~i~e~l~~~~--~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmeh-gvvs  162 (713)
T KOG2999|consen   87 RIMEILTEGN--NISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEH-GVVS  162 (713)
T ss_pred             HHHHHHhCCC--cHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh-ceee
Confidence            5566676664  3344558888888876 45677788889999999999987754    4445555555544333 2222


Q ss_pred             chhhhccCcHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827          285 AGSFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI  362 (552)
Q Consensus       285 ~~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  362 (552)
                      +. .....++.....+.+  ..+..+...|...|-+++.+.....+.+.+.--+..++..++.++..++..|+..+..+.
T Consensus       163 W~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  163 WE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF  241 (713)
T ss_pred             ee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            22 233444555555543  346778899999999999887777888888899999999999999999999888888887


Q ss_pred             ccCChHhHHHHHH
Q 008827          363 FLAEDKCKEEIFM  375 (552)
Q Consensus       363 ~~~~~~~~~~i~~  375 (552)
                      ...+++.|..+.+
T Consensus       242 ~~a~~~~R~~~~~  254 (713)
T KOG2999|consen  242 RKAPDDKRFEMAK  254 (713)
T ss_pred             hhCChHHHHHHHH
Confidence            6665555544443

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.17  E-value=0.22  Score=43.00  Aligned_cols=139  Identities=18%  Similarity=0.237  Sum_probs=96.8

Q ss_pred             CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHH
Q 008827          345 SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILD  424 (552)
Q Consensus       345 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~  424 (552)
                      ...+++|..+.-++..+-     +...+-.....-+.+..++...+.+-...++.++..+.-+.|+....++...| +++
T Consensus        16 ~~~~~~r~~a~v~l~k~l-----~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg-~~~   89 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLL-----DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEG-FLE   89 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTT-HHH
T ss_pred             CCCHhHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhh-HHH
Confidence            346678888888888773     12223333444566666777666667788899999999998888888877666 788


Q ss_pred             HHHHHhc-ccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-CCChh-HHHHHHHHHHhh
Q 008827          425 AVGRQLR-IASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSR-LRTAAVWAVLNL  498 (552)
Q Consensus       425 ~l~~~L~-~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~-~~~~~-~~~~a~~~l~~l  498 (552)
                      .+..+.. ..++..++..++.+|..-+ .+...|..|..        .+++.|...++ ++|.. +|..|+-.|+.+
T Consensus        90 ~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~~I~~--------~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen   90 SLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRTFISK--------NYVSWLKELYKNSKDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             HHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHHCCHH--------HCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHHHHHH--------HHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence            8888887 2266777778888776554 46656666664        55688999995 55566 888888777653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.15  E-value=2.1  Score=44.94  Aligned_cols=105  Identities=20%  Similarity=0.195  Sum_probs=66.5

Q ss_pred             hHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCCh
Q 008827          161 IKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE  239 (552)
Q Consensus       161 ~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~  239 (552)
                      ...|.+..+++-.. .+..||..++..|..+.....+....+++ +...++..-+.+.  .|.+|-+|+.+|+.+-.++.
T Consensus        82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Dr--ep~VRiqAv~aLsrlQ~d~~  158 (892)
T KOG2025|consen   82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDR--EPNVRIQAVLALSRLQGDPK  158 (892)
T ss_pred             HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhcc--CchHHHHHHHHHHHHhcCCC
Confidence            34556666666555 34678999999998887533222222222 3345565556665  37899999999999864221


Q ss_pred             hHHHHHHhcccHHHHHHhcC-CCCHHHHHHHHHHH
Q 008827          240 CCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCL  273 (552)
Q Consensus       240 ~~~~~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L  273 (552)
                      +-     +..+...+..+++ +++++||.++...|
T Consensus       159 de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  159 DE-----ECPVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             CC-----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence            10     1235666777776 78999999986554

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=95.00  E-value=4  Score=40.91  Aligned_cols=174  Identities=16%  Similarity=0.202  Sum_probs=105.4

Q ss_pred             CCHHHHHHHHHHHHHhhcCCc--hhHHHHHhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHH
Q 008827          304 TSTAVQVAALGAISNIVVDFT--TRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTAS  380 (552)
Q Consensus       304 ~~~~v~~~a~~aL~nl~~~~~--~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~  380 (552)
                      +..+-+..|..-|..+....+  -+-+.+  ..++..+++.+.+ .++..+.-|++.|..++.+...  +..--.+..+.
T Consensus       299 e~a~~~k~alsel~~m~~e~sfsvWeq~f--~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~--~l~DstE~ai~  374 (516)
T KOG2956|consen  299 ERASERKEALSELPKMLCEGSFSVWEQHF--AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA--RLFDSTEIAIC  374 (516)
T ss_pred             cchhHHHHHHHHHHHHHHccchhHHHHHH--HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH--hhhchHHHHHH
Confidence            355667777775655544332  222222  2466777888887 7888999999999999885432  11111223444


Q ss_pred             HHHhhhcCCChhHHHHHH-HHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHH
Q 008827          381 LLASLICDPEPSVQEQAL-ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEA  459 (552)
Q Consensus       381 ~l~~ll~~~~~~v~~~a~-~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~  459 (552)
                      -+++.-.+.++++...|. .+++-++..+|..          .+..+..++.+ .+...-..++..+..+..+-.  .+.
T Consensus       375 K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~----------~I~~i~~~Ilt-~D~~~~~~~iKm~Tkl~e~l~--~Ee  441 (516)
T KOG2956|consen  375 KVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ----------CIVNISPLILT-ADEPRAVAVIKMLTKLFERLS--AEE  441 (516)
T ss_pred             HHHHHHhCCchhHHHHHHHHHHHHHHhhCchh----------HHHHHhhHHhc-CcchHHHHHHHHHHHHHhhcC--HHH
Confidence            555555566666555554 4455555555532          33444444544 555566666666666654322  222


Q ss_pred             HHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          460 VMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       460 i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                      +.. ++    .++.|.+++...+..+.||+.|++||..+.
T Consensus       442 L~~-ll----~diaP~~iqay~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  442 LLN-LL----PDIAPCVIQAYDSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             HHH-hh----hhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence            222 11    477899999999999999999999998776

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.81  E-value=0.49  Score=48.08  Aligned_cols=130  Identities=15%  Similarity=0.082  Sum_probs=88.6

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhcccCChHhHHHHHH
Q 008827          297 LVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM  375 (552)
Q Consensus       297 Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~  375 (552)
                      +-+++.+.++-+|...+.+++---.+..       +.|++..++.. ..+.|.++|+.|+.||+-.|....         
T Consensus       521 I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------  584 (926)
T COG5116         521 INELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------  584 (926)
T ss_pred             HHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc---------
Confidence            3345556666677666666542221211       23677777777 667899999999999998887432         


Q ss_pred             hhcHHHHHhhh-cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCC
Q 008827          376 ELTASLLASLI-CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK  453 (552)
Q Consensus       376 ~~~~~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~  453 (552)
                       ..+...+++| .+.++.|+....-+|+-.|.+.-+..         +++.|-.++.+ +++=|+..|+.+++.+....
T Consensus       585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~---------a~diL~~L~~D-~~dfVRQ~AmIa~~mIl~Q~  652 (926)
T COG5116         585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV---------ATDILEALMYD-TNDFVRQSAMIAVGMILMQC  652 (926)
T ss_pred             -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH---------HHHHHHHHhhC-cHHHHHHHHHHHHHHHHhhc
Confidence             2345556666 46788999999999988887753221         45566566666 77789999999998887643

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.51  E-value=5.7  Score=40.12  Aligned_cols=250  Identities=15%  Similarity=0.027  Sum_probs=127.1

Q ss_pred             HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHH--hHHHHHHHhc-C-CCCchhchHHHHHHHhhcCCHHHHHHHHHh
Q 008827          129 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKT--KLINNLLELL-D-DPGRVGDEASFAFSSLIAEKEDMQKLAFEV  204 (552)
Q Consensus       129 ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~--g~i~~Lv~ll-~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  204 (552)
                      -.++++..+|..|+++|.+.+...+.    ..+.+  ..+..++.=| + .+.+|+.++..+|..+...-..   .-++.
T Consensus       266 ka~dp~a~~r~~a~r~L~~~as~~P~----kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~---~~l~~  338 (533)
T KOG2032|consen  266 KATDPSAKSRGMACRGLGNTASGAPD----KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN---DDLES  338 (533)
T ss_pred             hccCchhHHHHHHHHHHHHHhccCcH----HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh---cchhh
Confidence            44578889999999999999886432    22222  2344444444 3 2467888888877766432111   01112


Q ss_pred             CcH---HHHHHhhhcCCCChhhHHHHHHHHHHhhcC-ChhHHHHHHh--cccHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 008827          205 NGV---DKLYNHLQKGSLHPRRFEGILLALADMCSK-LECCRSRCLS--LQVLKLVVDALAHDSSDVRSAACMCLRSVSR  278 (552)
Q Consensus       205 ~~i---~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~--~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~  278 (552)
                      ..+   -.+..++.+.  +++.|.++...++.|+.- ...++..+.+  .+...+++--+.++++.+ ..||+.....+.
T Consensus       339 ~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~  415 (533)
T KOG2032|consen  339 YLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCY  415 (533)
T ss_pred             hchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcC
Confidence            222   2444555554  477888888877777652 2234444443  122333444455666655 345554443332


Q ss_pred             ccccccchhhhccCcHHHHHHhhc---CCCH-HHHH-HHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHH
Q 008827          279 SIKNLSAGSFMNETIVIPLVRLLD---DTST-AVQV-AALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN  353 (552)
Q Consensus       279 ~~~~~~~~~~~~~~~i~~Lv~lL~---~~~~-~v~~-~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~  353 (552)
                        +++..         +.+.++.+   +.+. ..+. ..-|+ ..+...+++....     .......+++++-+.+|..
T Consensus       416 --p~l~r---------ke~~~~~q~~ld~~~~~~q~Fyn~~c-~~L~~i~~d~l~~-----~~t~~~~~f~sswe~vr~a  478 (533)
T KOG2032|consen  416 --PNLVR---------KELYHLFQESLDTDMARFQAFYNQWC-IQLNHIHPDILML-----LLTEDQHIFSSSWEQVREA  478 (533)
T ss_pred             --chhHH---------HHHHHHHhhhhHHhHHHHHHHHHHHH-HHHhhhCHHHHHH-----HHHhchhheecchHHHHHH
Confidence              22211         12222222   2221 1111 11111 1222212111110     1122333455556778887


Q ss_pred             HHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827          354 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV  405 (552)
Q Consensus       354 a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~  405 (552)
                      +...-.++..+..+......-.......+-.+.+++-++++..+..++..+.
T Consensus       479 avl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  479 AVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             HHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence            7766666654444333334434445666777788999999998888876654

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.46  E-value=3.9  Score=37.96  Aligned_cols=147  Identities=12%  Similarity=0.144  Sum_probs=95.3

Q ss_pred             HHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhh
Q 008827          311 AALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-----DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL  385 (552)
Q Consensus       311 ~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l  385 (552)
                      .|...+-.++. .++-|..+++++..-.|..++...     .+.+|..+++.++.+....+++.-.-+++...+|.-++.
T Consensus        69 naLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~  147 (262)
T PF04078_consen   69 NALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI  147 (262)
T ss_dssp             HHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred             HHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence            44444445554 566677899888776677777653     367999999999999987777777778888899999999


Q ss_pred             hcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc------CchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHH
Q 008827          386 ICDPEPSVQEQALALVRNLVDGRINSVEYIFAED------GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEA  459 (552)
Q Consensus       386 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~------~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~  459 (552)
                      |..++.--+.-|..++..+..++. ..+++.+..      +.++..++..+...+++..-.+.+.+-..++... ..++.
T Consensus       148 me~GselSKtvAtfIlqKIL~dd~-GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp-rar~a  225 (262)
T PF04078_consen  148 MEFGSELSKTVATFILQKILLDDV-GLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP-RAREA  225 (262)
T ss_dssp             HHHS-HHHHHHHHHHHHHHHHSHH-HHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST-THHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHcchh-HHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH-HHHHH
Confidence            998888888888888888876532 233332211      0134444444444477777788888888887643 34444


Q ss_pred             H
Q 008827          460 V  460 (552)
Q Consensus       460 i  460 (552)
                      +
T Consensus       226 L  226 (262)
T PF04078_consen  226 L  226 (262)
T ss_dssp             H
T ss_pred             H
Confidence            3

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=94.32  E-value=0.86  Score=40.19  Aligned_cols=112  Identities=18%  Similarity=0.264  Sum_probs=79.5

Q ss_pred             HHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcC--------------c---hHHHHHHHhcccCchhHHHHHH
Q 008827          381 LLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDG--------------I---ILDAVGRQLRIASKAEIEIQGM  443 (552)
Q Consensus       381 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~--------------~---~~~~l~~~L~~~~~~~v~~~a~  443 (552)
                      .+.-++.|+++.++..|+.++..+.++......+.-+..+              .   +-..|...|+.+.+..+..+.+
T Consensus        44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l  123 (182)
T PF13251_consen   44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL  123 (182)
T ss_pred             hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            3444567899999999999999999885433332221111              0   2244556666667788888999


Q ss_pred             HHHHhhcCCChhhHH--HHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          444 YVLGNVATGKESHKE--AVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       444 ~~L~~la~~~~~~~~--~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      .++..+....+.++-  .++        ..++..+..++.+.|.+++..+..+++.+..
T Consensus       124 K~la~Lv~~tPY~rL~~~ll--------~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s  174 (182)
T PF13251_consen  124 KCLAVLVQATPYHRLPPGLL--------TEVVTQVRPLLRHRDPNVRVAALSCLGALLS  174 (182)
T ss_pred             HHHHHHHccCChhhcCHhHH--------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            999999987775442  222        3555677778889999999999999998874

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=94.24  E-value=0.28  Score=45.59  Aligned_cols=100  Identities=19%  Similarity=0.172  Sum_probs=78.5

Q ss_pred             CcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhc-CCCCcchHHHHHHHHhh-cCChhhHHHHHhcCchHHHH
Q 008827            6 SYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLN-NESENVSGLGASIISHS-CKTSLEQKLLFDAGVLKRLT   83 (552)
Q Consensus         6 ~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~-~~~~~~~~~a~~~l~~~-~~~~~~~~~l~~~g~i~~L~   83 (552)
                      ++..++-.|++.|.+++......+.-+-+..++..++.+|. +..+.++.++..+|.++ .+.+.+...+.+.+|+..++
T Consensus       103 ~~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~  182 (257)
T PF08045_consen  103 SNDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVC  182 (257)
T ss_pred             chhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHH
Confidence            45566778999999998776555334448889999999995 45688999999988874 56677877889999999999


Q ss_pred             HhhcC---CHHHHHHHHHHHHHHhc
Q 008827           84 SLLGG---SLIQRDASLESIATIFK  105 (552)
Q Consensus        84 ~lL~~---~~~v~~~al~~L~~l~~  105 (552)
                      .++++   +..++.+++.-|.-...
T Consensus       183 ~llk~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  183 SLLKSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             HHHccccccHHHhHHHHHHHHHHHc
Confidence            99996   35788888877766543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.22  E-value=0.59  Score=48.69  Aligned_cols=143  Identities=14%  Similarity=0.212  Sum_probs=103.9

Q ss_pred             cHHHHHHhcCC----CCHHHHHHHHHHHHHh-hcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCC
Q 008827          250 VLKLVVDALAH----DSSDVRSAACMCLRSV-SRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDF  323 (552)
Q Consensus       250 ~l~~lv~~L~~----~~~~v~~~a~~~L~~l-s~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~  323 (552)
                      +-|.+.+....    .+++++.+|.-+|..+ +-+ .+.|      ..-+|.++..++ +++|.+|.+|+-.++-++..+
T Consensus       893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS-~~fc------~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcf  965 (1128)
T COG5098         893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLS-FEFC------SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCF  965 (1128)
T ss_pred             hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHh-HHHH------HHHHHHHHHHHhhCCCcceeccceeeccccceeh
Confidence            44555555543    6789999998888766 333 2222      345788999997 899999999999999887655


Q ss_pred             chhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHH
Q 008827          324 TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRN  403 (552)
Q Consensus       324 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~  403 (552)
                      .....     ..-..|.+-|.+.+..||..++.++.++.-...      +--.|-.+.+..+|.++|..+..-|-..+..
T Consensus       966 N~~~d-----e~t~yLyrrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~ 1034 (1128)
T COG5098         966 NTTAD-----EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQ 1034 (1128)
T ss_pred             hhhhH-----HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHH
Confidence            44322     334677788889999999999999998754221      1123556778889999999999888888888


Q ss_pred             hhcCCcc
Q 008827          404 LVDGRIN  410 (552)
Q Consensus       404 l~~~~~~  410 (552)
                      ++..++.
T Consensus      1035 ~a~KdNt 1041 (1128)
T COG5098        1035 IAKKDNT 1041 (1128)
T ss_pred             HHhcccc
Confidence            8766543

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.19  E-value=3.4  Score=41.25  Aligned_cols=275  Identities=18%  Similarity=0.170  Sum_probs=141.0

Q ss_pred             cchHHHHHhhcC-CCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC--CH-HHHHHHHHHHHHHhcCChhhh
Q 008827           36 ENMEFLLSLLNN-ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SL-IQRDASLESIATIFKNNPEVV  111 (552)
Q Consensus        36 ~~i~~l~~ll~~-~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~~-~v~~~al~~L~~l~~~~~~~~  111 (552)
                      +-+..+++-+.+ .+.++|..++--|+.-|..+.+|..+...|.++.++..+.+  ++ ..-..++..+..++.+.... 
T Consensus        21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~-   99 (361)
T PF07814_consen   21 DEVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM-   99 (361)
T ss_pred             HHHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch-
Confidence            345667777763 44678888888888888899999999999999999999965  22 22233333344444443222 


Q ss_pred             hhhccccCCccHHHHHHHHhc-CChhhHHHHH-HHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC------C--CCc--h
Q 008827          112 SQFVGPDTGRTLSCIIEIVKD-RFARTRLLAS-LCLIVIRNASPCYLQDVGIKTKLINNLLELLD------D--PGR--V  179 (552)
Q Consensus       112 ~~~~~~~~~~~l~~l~~ll~~-~~~~vr~~A~-~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~------~--~~~--v  179 (552)
                       .+.  .+...+..++++++- ....+..... ..=.++++          ...+......+.+.      .  +++  -
T Consensus       100 -~l~--~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk----------~~~~~~~~~~~~~~~~~~~~~~~~~~lsp  166 (361)
T PF07814_consen  100 -HLL--LDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSK----------VQQKSRSLCKELLSSGSSWKSPKPPELSP  166 (361)
T ss_pred             -hhh--hchhHHHHHHHHhccccccccccchhhhhhhhhhH----------HHHHHHHHHHHHHhccccccccCCccccc
Confidence             111  012333344555551 0000000000 00000000          01112222222221      0  111  1


Q ss_pred             hchHHHHHHHhh--------------cCCHHHHHHHHHhCcHHHHHHhhhc----CC-----CC-----hhhHHHHHHHH
Q 008827          180 GDEASFAFSSLI--------------AEKEDMQKLAFEVNGVDKLYNHLQK----GS-----LH-----PRRFEGILLAL  231 (552)
Q Consensus       180 ~~~a~~~L~~l~--------------~~~~~~~~~~~~~~~i~~L~~~L~~----~~-----~~-----~~~~~~a~~aL  231 (552)
                      +.-|..++..+.              ...+.++....+.|++..+++.+.+    ..     ..     ....+.++++|
T Consensus       167 ~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~IL  246 (361)
T PF07814_consen  167 QTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSIL  246 (361)
T ss_pred             ccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHH
Confidence            333444444331              1112234445667889999988762    11     01     11345677777


Q ss_pred             HHhhcCChhHHHHHHhc--ccHHHHHHh----cCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh----
Q 008827          232 ADMCSKLECCRSRCLSL--QVLKLVVDA----LAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL----  301 (552)
Q Consensus       232 ~~l~~~~~~~~~~~~~~--~~l~~lv~~----L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL----  301 (552)
                      -+.+..++.++......  +.++.....    ..+........+++.+.|++.+.+..|.. +...++...+..+.    
T Consensus       247 Es~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~-~~s~~l~~~~~~i~~~~~  325 (361)
T PF07814_consen  247 ESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEE-FASPKLGQQLGLIVTSFF  325 (361)
T ss_pred             HHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHh-hhhhHhccchHHHHHhhc
Confidence            77776555555544432  333333332    22334555788899999999987776665 54443332221111    


Q ss_pred             ---c-------CCCHHHHHHHHHHHHHhhcCCch
Q 008827          302 ---D-------DTSTAVQVAALGAISNIVVDFTT  325 (552)
Q Consensus       302 ---~-------~~~~~v~~~a~~aL~nl~~~~~~  325 (552)
                         +       +..-+...-+.+++.|++..++.
T Consensus       326 ~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~~  359 (361)
T PF07814_consen  326 CVLSLPNYVPEESSFDILILALGLLINLVEHSEA  359 (361)
T ss_pred             ccccccccccccccchHHHHHHHhHHHheeeCcc
Confidence               1       11236777888888888875543

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=94.07  E-value=3.1  Score=45.65  Aligned_cols=182  Identities=17%  Similarity=0.149  Sum_probs=121.0

Q ss_pred             HHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC--CchhchHHHHHHHhhcCCHHHHHHHHHh
Q 008827          127 IEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP--GRVGDEASFAFSSLIAEKEDMQKLAFEV  204 (552)
Q Consensus       127 ~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~  204 (552)
                      -..+.|.++..|..|+..+.........  .......|.+-.+++....+  ..+...++.+|..++.......+ -+..
T Consensus       259 ~t~~~s~~WK~R~Eale~l~~~l~e~~~--~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~-~~~~  335 (815)
T KOG1820|consen  259 ETEMLSKKWKDRKEALEELVAILEEAKK--EIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR-KYAK  335 (815)
T ss_pred             HHhhhccchHHHHHHHHHHHHHHhcccc--ccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH-HHHH
Confidence            3466789999999999999887765430  01112245555566655533  35667788888888765433211 2234


Q ss_pred             CcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccc-cc
Q 008827          205 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK-NL  283 (552)
Q Consensus       205 ~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~-~~  283 (552)
                      +..|.+++.+....  +.+++.++.++-..+....       -....+.+...++++++.++..+...+...-+... ..
T Consensus       336 ~v~p~lld~lkekk--~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~  406 (815)
T KOG1820|consen  336 NVFPSLLDRLKEKK--SELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT  406 (815)
T ss_pred             hhcchHHHHhhhcc--HHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence            55678888777653  6778877777666654211       12368889999999999999887766665544433 22


Q ss_pred             cchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 008827          284 SAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVV  321 (552)
Q Consensus       284 ~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~  321 (552)
                      ... -.-.+.+|.++....|.+.+||.+|..+++-+..
T Consensus       407 ~~~-~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  407 VEK-ETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             cch-hhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            222 2346778888888899999999999999987654

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=94.05  E-value=2  Score=45.37  Aligned_cols=236  Identities=17%  Similarity=0.174  Sum_probs=137.5

Q ss_pred             CChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHH
Q 008827          133 RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYN  212 (552)
Q Consensus       133 ~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  212 (552)
                      .|+.-+..=.+.|..+...    ....+..+.++|.|++.+.+..-+ -...-.+..++...+   ...++...+|.|..
T Consensus       285 kdn~qKs~Flk~Ls~~ip~----fp~rv~~~kiLP~L~~el~n~~~v-p~~LP~v~~i~~~~s---~~~~~~~~~p~l~p  356 (700)
T KOG2137|consen  285 KDNSQKSSFLKGLSKLIPT----FPARVLFQKILPTLVAELVNTKMV-PIVLPLVLLIAEGLS---QNEFGPKMLPALKP  356 (700)
T ss_pred             cCcHHHHHHHHHHHHhhcc----CCHHHHHHhhhhHHHHHhcccccc-ccccchhhhhhhccc---hhhhhhhhhHHHHH
Confidence            3445555445555555543    234466788999999888533211 111111122222211   22344556777777


Q ss_pred             hhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccC
Q 008827          213 HLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNET  292 (552)
Q Consensus       213 ~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~  292 (552)
                      .+..+.  +.  +.-+..+.++-.--+.....-+...++|.|...+++.+..++..++..+..++...+.   . ++...
T Consensus       357 i~~~~~--~~--~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~-~vk~~  428 (700)
T KOG2137|consen  357 IYSASD--PK--QALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---P-FVKQA  428 (700)
T ss_pred             HhccCC--cc--cchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---H-HHHHH
Confidence            666432  21  2222222222000011112234556799999999999999999999999999876432   2 67778


Q ss_pred             cHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHH
Q 008827          293 IVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE  371 (552)
Q Consensus       293 ~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~  371 (552)
                      ++|.+-++. .+++..++..++.++..++...+    ...-..-+.++.+-.+..++.+....+.+..++.....  .+.
T Consensus       429 ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD----~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~--~g~  502 (700)
T KOG2137|consen  429 ILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD----KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIY--SGV  502 (700)
T ss_pred             HHHHhhcchhcccchHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc--cce
Confidence            889888875 36789999999999998882111    11112334455555566788888887777777654221  124


Q ss_pred             HHHHhhcHHHHHhhhcCCC
Q 008827          372 EIFMELTASLLASLICDPE  390 (552)
Q Consensus       372 ~i~~~~~~~~l~~ll~~~~  390 (552)
                      .++.+.++|.+.-+...+.
T Consensus       503 ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  503 EVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             eeehhhhhhhhhhhhhccc
Confidence            5566667777777665544

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=93.95  E-value=3.7  Score=41.15  Aligned_cols=170  Identities=19%  Similarity=0.202  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHH-HhcCChhhhhhhccccCCccHHHHHHHHhc-CChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHH
Q 008827           91 IQRDASLESIAT-IFKNNPEVVSQFVGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINN  168 (552)
Q Consensus        91 ~v~~~al~~L~~-l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~  168 (552)
                      +-+..|+.-|-. +|++.-.+|.+..    +..+..+++.+++ .+...+..|.+.|..+..+.+....+.  .+-++..
T Consensus       302 ~~~k~alsel~~m~~e~sfsvWeq~f----~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Ds--tE~ai~K  375 (516)
T KOG2956|consen  302 SERKEALSELPKMLCEGSFSVWEQHF----AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDS--TEIAICK  375 (516)
T ss_pred             hHHHHHHHHHHHHHHccchhHHHHHH----HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhch--HHHHHHH
Confidence            445566664544 4555445554432    4567778887776 899999999999999998764322211  1234444


Q ss_pred             HHHhcCCC-CchhchHHH-HHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC--ChhHHHH
Q 008827          169 LLELLDDP-GRVGDEASF-AFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK--LECCRSR  244 (552)
Q Consensus       169 Lv~ll~~~-~~v~~~a~~-~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~--~~~~~~~  244 (552)
                      +++.-++. +.+...|.. ++.-+++..|..        .|..++.++.+.  +......++..+..++..  .++.-..
T Consensus       376 ~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~--D~~~~~~~iKm~Tkl~e~l~~EeL~~l  445 (516)
T KOG2956|consen  376 VLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTA--DEPRAVAVIKMLTKLFERLSAEELLNL  445 (516)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcC--cchHHHHHHHHHHHHHhhcCHHHHHHh
Confidence            44444433 445555544 444555555542        244455555554  233455566666666642  1122111


Q ss_pred             HHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 008827          245 CLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR  278 (552)
Q Consensus       245 ~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~  278 (552)
                        -..+.|.+++.-.+.+..||+.++.||..+-.
T Consensus       446 --l~diaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  446 --LPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             --hhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence              13588999999999999999999999988754

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.80  E-value=0.4  Score=37.00  Aligned_cols=72  Identities=19%  Similarity=0.130  Sum_probs=57.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc
Q 008827          336 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN  410 (552)
Q Consensus       336 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~  410 (552)
                      ....+..+.++.+.+|..++..|..+....+   ....-...++..+...++++|+.|-.+|+..|..++...|+
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            4556677888889999999999999987544   12222346677888999999999999999999999977664

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=93.68  E-value=0.67  Score=43.14  Aligned_cols=97  Identities=24%  Similarity=0.277  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhh
Q 008827          265 VRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS  343 (552)
Q Consensus       265 v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll  343 (552)
                      ....|...|.-++--++..+.. |..+..+..++.+|+ ...+.++.++..+|..+..+.+.+...+-+.+|+..++.++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~l-F~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKL-FHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHH-HhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            3455667777777665665655 888999999999995 56799999999999999888888888888999999999999


Q ss_pred             cCC--CHHHHHHHHHHHHHhc
Q 008827          344 KSM--DSTIRLNALRALRNLI  362 (552)
Q Consensus       344 ~~~--~~~v~~~a~~aL~~l~  362 (552)
                      ++.  +.++|...+..|.-..
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHH
Confidence            875  5778888887776443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=93.45  E-value=1  Score=40.24  Aligned_cols=128  Identities=16%  Similarity=0.137  Sum_probs=80.0

Q ss_pred             CCChhHHHHHHHHHHHhhcCCcchHHHHHhhc--------------CchHHHHHHHhcc-----cCchhHHHHHHHHHHh
Q 008827          388 DPEPSVQEQALALVRNLVDGRINSVEYIFAED--------------GIILDAVGRQLRI-----ASKAEIEIQGMYVLGN  448 (552)
Q Consensus       388 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~--------------~~~~~~l~~~L~~-----~~~~~v~~~a~~~L~~  448 (552)
                      +++...-..++.+|.|++..+. ....++...              +..+..|+..+..     .+...-....+.++.|
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            3444455566778888876532 222232221              1245555555532     1334456778999999


Q ss_pred             hcCCChhhHHHHHHHhhHhhhhhh--HHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHH---CCcHHHHH
Q 008827          449 VATGKESHKEAVMDQLLLRAENKA--QSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHD---AGIVSHVK  523 (552)
Q Consensus       449 la~~~~~~~~~i~~~~~~~~~~~~--v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~---~g~~~~L~  523 (552)
                      ++.- +..|+.+++.     ..+.  +..|+.++++.+..-|..++.+|.|+++    ....+ ..|..   .++++.|.
T Consensus        85 lS~~-~~gR~~~l~~-----~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccF----d~~~H-~~LL~~~~~~iLp~LL  153 (192)
T PF04063_consen   85 LSQL-PEGRQFFLDP-----QRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCF----DTDSH-EWLLSDDEVDILPYLL  153 (192)
T ss_pred             hcCC-HHHHHHHhCc-----hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhc----cHhHH-HHhcCchhhhhHHHHH
Confidence            9974 4578877762     2344  7888999999988888999999999998    22223 34433   46677666


Q ss_pred             hhhc
Q 008827          524 NMVN  527 (552)
Q Consensus       524 ~ll~  527 (552)
                      --+.
T Consensus       154 lPLa  157 (192)
T PF04063_consen  154 LPLA  157 (192)
T ss_pred             hhcc
Confidence            6443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=93.41  E-value=1.5  Score=38.20  Aligned_cols=116  Identities=16%  Similarity=0.263  Sum_probs=76.2

Q ss_pred             cchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhc--CchHHHHHhhcC--CHHHHHHHHHHHHHHh---cCCh
Q 008827           36 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDA--GVLKRLTSLLGG--SLIQRDASLESIATIF---KNNP  108 (552)
Q Consensus        36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~--g~i~~L~~lL~~--~~~v~~~al~~L~~l~---~~~~  108 (552)
                      ..+..+.++|+++++..+..++..+.-.+.... .+.+.+.  -|+..++.+|++  +..+.+.++.+|..|.   .+.+
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            345678889999899999999988888875533 2334343  388999999986  3477888888888775   4455


Q ss_pred             hhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCC
Q 008827          109 EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC  154 (552)
Q Consensus       109 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~  154 (552)
                      +..+++....-...+..++.++++  ......+..+|..+....+.
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence            555555422112333444445554  56666777777777665543

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.34  E-value=6.3  Score=36.07  Aligned_cols=139  Identities=15%  Similarity=0.176  Sum_probs=101.2

Q ss_pred             HHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-----CCCHHHHHHHHHHHHHhhcCCc-hhHHHHHhhCcHHHHH
Q 008827          267 SAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-----DTSTAVQVAALGAISNIVVDFT-TRRSTFIRLGGVKLLV  340 (552)
Q Consensus       267 ~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-----~~~~~v~~~a~~aL~nl~~~~~-~~~~~~~~~g~i~~L~  340 (552)
                      ..+...+..++.+ +..+.. |.++.+--.+..+|.     .+.+-+|..+.+.|+.++...+ .....+...+++|..+
T Consensus        97 cnaL~LlQcvASH-pdTr~~-FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   97 CNALALLQCVASH-PDTRRA-FLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             HHHHHHHHHHhcC-cchHHH-HHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            4555556666666 666766 888887777888875     3567899999999999986443 3455778899999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcccCCh-H------hHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827          341 QLSKSMDSTIRLNALRALRNLIFLAED-K------CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  407 (552)
Q Consensus       341 ~ll~~~~~~v~~~a~~aL~~l~~~~~~-~------~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  407 (552)
                      +.+..+++..+..|...+..+..++.- .      .|-..+....-..+.++.+.+++.+...++++..+++.+
T Consensus       175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999999887653221 1      122222222234455667788999999999999999865

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=93.34  E-value=0.68  Score=41.31  Aligned_cols=125  Identities=15%  Similarity=0.140  Sum_probs=81.7

Q ss_pred             CCCCHHHHHHHHHHHHHhhcccccccchh---------------hhccCcHHHHHHhhcC------CCHHHHHHHHHHHH
Q 008827          259 AHDSSDVRSAACMCLRSVSRSIKNLSAGS---------------FMNETIVIPLVRLLDD------TSTAVQVAALGAIS  317 (552)
Q Consensus       259 ~~~~~~v~~~a~~~L~~ls~~~~~~~~~~---------------~~~~~~i~~Lv~lL~~------~~~~v~~~a~~aL~  317 (552)
                      .++....-..+|+.|.|+++..+ .+...               ......+..|+.++..      ...+-....+..+.
T Consensus         5 ~~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~   83 (192)
T PF04063_consen    5 TDPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA   83 (192)
T ss_pred             cCCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence            34445556677888888887632 22210               1123467778877643      23455677888999


Q ss_pred             HhhcCCchhHHHHHhh--Cc--HHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHh---hcHHHHHhhhc
Q 008827          318 NIVVDFTTRRSTFIRL--GG--VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME---LTASLLASLIC  387 (552)
Q Consensus       318 nl~~~~~~~~~~~~~~--g~--i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~---~~~~~l~~ll~  387 (552)
                      |++. .+..|+.+.+.  +.  +..|+.++.+.+..-|.-++.++.|+|...  +....++..   ..++.|+--+.
T Consensus        84 NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~--~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   84 NLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT--DSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH--hHHHHhcCchhhhhHHHHHhhcc
Confidence            9995 56778888764  34  788889999887777778899999999854  345555542   34444444443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=93.26  E-value=13  Score=39.59  Aligned_cols=277  Identities=13%  Similarity=0.109  Sum_probs=154.2

Q ss_pred             CcHHHHHHhhhcCC------CChhhHHHHHHHHHHhhc--CChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008827          205 NGVDKLYNHLQKGS------LHPRRFEGILLALADMCS--KLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV  276 (552)
Q Consensus       205 ~~i~~L~~~L~~~~------~~~~~~~~a~~aL~~l~~--~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~l  276 (552)
                      |.++.+.++|....      ..+...+.|++.++++..  ..+..-..+.+.-++++++..+++..--++..+|..+..+
T Consensus       408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~  487 (970)
T COG5656         408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI  487 (970)
T ss_pred             hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Confidence            66788888774321      124456788888888765  2233334455556788888999999999999999999988


Q ss_pred             hcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHh--hCcHHHHHHhhcCCCHHHHHHH
Q 008827          277 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR--LGGVKLLVQLSKSMDSTIRLNA  354 (552)
Q Consensus       277 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~a  354 (552)
                      +...+..    -......+.....+++.+-.++..|+-|+.-+..+.. .-..+..  -+.++.|+.+...-+.+.-...
T Consensus       488 eeDfkd~----~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q-~h~k~sahVp~tmekLLsLSn~feiD~LS~v  562 (970)
T COG5656         488 EEDFKDN----GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ-SHEKFSAHVPETMEKLLSLSNTFEIDPLSMV  562 (970)
T ss_pred             HHhcccc----hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh-hhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence            5542221    1223344556667778888999999999988876542 2222222  1445555555554443433333


Q ss_pred             HHH-HHHhcccCChHhHHHHHHh---hcHHHHHhhhcCC------ChhHHHHHHHHHHHhhcC------CcchHHHHHhh
Q 008827          355 LRA-LRNLIFLAEDKCKEEIFME---LTASLLASLICDP------EPSVQEQALALVRNLVDG------RINSVEYIFAE  418 (552)
Q Consensus       355 ~~a-L~~l~~~~~~~~~~~i~~~---~~~~~l~~ll~~~------~~~v~~~a~~~L~~l~~~------~~~~~~~i~~~  418 (552)
                      ... +..++..-+| ...++...   ..+.....++..+      ..+-|.+|.++|+.+...      .++..+++...
T Consensus       563 Me~fVe~fseELsp-fa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~s  641 (970)
T COG5656         563 MESFVEYFSEELSP-FAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVS  641 (970)
T ss_pred             HHHHHHHhHHhhch-hHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            322 2233322222 11222211   1122233334322      135667778888776532      22222222221


Q ss_pred             cCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCCh-hHHHHHHHHHHh
Q 008827          419 DGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS-RLRTAAVWAVLN  497 (552)
Q Consensus       419 ~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~-~~~~~a~~~l~~  497 (552)
                         ..+..--.|.+ .....-..|+-.+-+.+-... ....+    .    -|+...+.+++.+... ..-.+++-++.|
T Consensus       642 ---lypvi~Filkn-~i~dfy~Ea~dildg~tf~sk-eI~pi----m----wgi~Ell~~~l~~~~t~~y~ee~~~al~n  708 (970)
T COG5656         642 ---LYPVISFILKN-EISDFYQEALDILDGYTFMSK-EIEPI----M----WGIFELLLNLLIDEITAVYSEEVADALDN  708 (970)
T ss_pred             ---HHHHHHHHHhh-hHHHHHHHHHHHHhhhhHHHH-Hhhhh----h----hHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence               23444334444 445566667776665543111 12222    2    3666777788887764 677888889999


Q ss_pred             hcC
Q 008827          498 LTC  500 (552)
Q Consensus       498 l~~  500 (552)
                      +..
T Consensus       709 fit  711 (970)
T COG5656         709 FIT  711 (970)
T ss_pred             HHH
Confidence            874

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=93.05  E-value=7.5  Score=36.11  Aligned_cols=197  Identities=13%  Similarity=0.035  Sum_probs=114.2

Q ss_pred             HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHHHhCcH
Q 008827          129 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGV  207 (552)
Q Consensus       129 ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i  207 (552)
                      +.+..+++.+......|..++.++.      ....-++..|..+.+.+ .+.+..+.+.+..+-..++...      +.+
T Consensus         9 l~~~~~~~~~~~~L~~L~~l~~~~~------~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L   76 (234)
T PF12530_consen    9 LGKISDPELQLPLLEALPSLACHKN------VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFL   76 (234)
T ss_pred             hcCCCChHHHHHHHHHHHHHhccCc------cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHH
Confidence            6678899999999999999988651      12234666677766643 3344455666666665443211      223


Q ss_pred             HHHHHh--hh------cCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhc-CCCCHHHHHHHHHHHHHhhc
Q 008827          208 DKLYNH--LQ------KGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL-AHDSSDVRSAACMCLRSVSR  278 (552)
Q Consensus       208 ~~L~~~--L~------~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L-~~~~~~v~~~a~~~L~~ls~  278 (552)
                      ..++..  ++      +.+...+..-....++..+|...++.     -..+++.+..++ ++.++.++..+..++..++.
T Consensus        77 ~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~  151 (234)
T PF12530_consen   77 QPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEALAPLCE  151 (234)
T ss_pred             HHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            333332  11      11112233344456777888766552     223688899999 78889999999999999985


Q ss_pred             ccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCch-hHHHHHhhCcHHHHHHhhcCCCH
Q 008827          279 SIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTT-RRSTFIRLGGVKLLVQLSKSMDS  348 (552)
Q Consensus       279 ~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~-~~~~~~~~g~i~~L~~ll~~~~~  348 (552)
                      . +..     .-......+..-++ +..|.+...-+.-+..+....-+ .........++..+.++..+.+.
T Consensus       152 ~-~vv-----d~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~  217 (234)
T PF12530_consen  152 A-EVV-----DFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV  217 (234)
T ss_pred             H-hhc-----cHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence            4 111     11234444555454 44667766555544443332211 11233445677777777776553

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=92.99  E-value=3.2  Score=43.71  Aligned_cols=190  Identities=13%  Similarity=0.135  Sum_probs=124.5

Q ss_pred             HHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccc
Q 008827          202 FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK  281 (552)
Q Consensus       202 ~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~  281 (552)
                      ++.+.+|.|++++...+  ..+|..-+.-+-..   -+...+.+++..++|.+...+.+.++.+|..++.++..++....
T Consensus       327 yq~~i~p~l~kLF~~~D--r~iR~~LL~~i~~~---i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~  401 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPD--RQIRLLLLQYIEKY---IDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS  401 (690)
T ss_pred             cccchhhhHHHHhcCcc--hHHHHHHHHhHHHH---hhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc
Confidence            44567899999888764  44555444333333   23445567788899999999999999999999999988875422


Q ss_pred             cccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008827          282 NLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL  361 (552)
Q Consensus       282 ~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l  361 (552)
                      .   . ......+..+-++-.|++..+|...+-+|+.++.......   .+.-.+..+.+-++++-..-|..+++++...
T Consensus       402 ~---~-~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at  474 (690)
T KOG1243|consen  402 K---R-NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAAT  474 (690)
T ss_pred             h---h-hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhc
Confidence            1   1 1222334444444447788999999999988876433221   2223445566777887777889998888766


Q ss_pred             cccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827          362 IFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  407 (552)
Q Consensus       362 ~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  407 (552)
                      ...-+    ..-+...+++.+.-+.-+++..++..+..+++-....
T Consensus       475 ~~~~~----~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~k  516 (690)
T KOG1243|consen  475 QEYFD----QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEK  516 (690)
T ss_pred             ccccc----hhhhhhhccccccccccCcccchhhHHHHHHHHHHhh
Confidence            44322    1122334566677777788888888887777665433

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=92.79  E-value=4.6  Score=43.77  Aligned_cols=197  Identities=17%  Similarity=0.170  Sum_probs=106.7

Q ss_pred             HHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC----CCHHHHHHHHHHHHHhhccccc
Q 008827          207 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH----DSSDVRSAACMCLRSVSRSIKN  282 (552)
Q Consensus       207 i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~----~~~~v~~~a~~~L~~ls~~~~~  282 (552)
                      +..+.+++........   .+...|..+.......     ....+..+..+++.    .++.++..+..+++.+.+..-.
T Consensus       397 v~~i~~~I~~~~~~~~---ea~~~l~~l~~~~~~P-----t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  397 VKFIKDLIKSKKLTDD---EAAQLLASLPFHVRRP-----TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHTT-S-HH---HHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCHH---HHHHHHHHHHhhcCCC-----CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            5566676666532222   2333444443321011     11245556666653    4567888888888877543211


Q ss_pred             c---------cchhhhccCcHHHHHHhhc----CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC---
Q 008827          283 L---------SAGSFMNETIVIPLVRLLD----DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM---  346 (552)
Q Consensus       283 ~---------~~~~~~~~~~i~~Lv~lL~----~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~---  346 (552)
                      .         +.. .....+++.+...+.    ..+.+-+..++.||+|+-.  +         ..++.+..++.+.   
T Consensus       469 ~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~  536 (618)
T PF01347_consen  469 NSDSAEFCDPCSR-CIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEV  536 (618)
T ss_dssp             T-----------S-S--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S
T ss_pred             cccccccccccch-hhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhcccc
Confidence            1         111 244566777777665    4577888999999999853  1         4677888887776   


Q ss_pred             CHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC--CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHH
Q 008827          347 DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD--PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILD  424 (552)
Q Consensus       347 ~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~  424 (552)
                      +..+|..|+++|..++... |        ..+.+.++.++.+  .+++++..|..+|-.   .+|..  .       .+.
T Consensus       537 ~~~~R~~Ai~Alr~~~~~~-~--------~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~--~-------~l~  595 (618)
T PF01347_consen  537 PHFIRVAAIQALRRLAKHC-P--------EKVREILLPIFMNTTEDPEVRIAAYLILMR---CNPSP--S-------VLQ  595 (618)
T ss_dssp             -HHHHHHHHHTTTTGGGT--H--------HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH---T---H--H-------HHH
T ss_pred             chHHHHHHHHHHHHHhhcC-c--------HHHHHHHHHHhcCCCCChhHHHHHHHHHHh---cCCCH--H-------HHH
Confidence            6789999999999885532 2        1234556666653  456788777655433   22211  0       455


Q ss_pred             HHHHHhcccCchhHHHHHHH
Q 008827          425 AVGRQLRIASKAEIEIQGMY  444 (552)
Q Consensus       425 ~l~~~L~~~~~~~v~~~a~~  444 (552)
                      .+...+..+++.+|......
T Consensus       596 ~i~~~l~~E~~~QV~sfv~S  615 (618)
T PF01347_consen  596 RIAQSLWNEPSNQVASFVYS  615 (618)
T ss_dssp             HHHHHHTT-S-HHHHHHHHH
T ss_pred             HHHHHHhhCchHHHHHHHHH
Confidence            66666666566666554443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=92.65  E-value=9.6  Score=36.30  Aligned_cols=204  Identities=13%  Similarity=0.164  Sum_probs=132.3

Q ss_pred             HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHH----HHHH-hcccHHHHHHhcCCCCHHHHHHHHHHH
Q 008827          199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR----SRCL-SLQVLKLVVDALAHDSSDVRSAACMCL  273 (552)
Q Consensus       199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~----~~~~-~~~~l~~lv~~L~~~~~~v~~~a~~~L  273 (552)
                      ..+.++|.++.++..+....  .+-+..++....++-...-..|    ..+. ....+..++..-.. .+++-.++-..+
T Consensus        73 qef~~~~~l~~lI~~l~~l~--fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~ml  149 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLE--FESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNML  149 (342)
T ss_pred             HHHHhCCchHHHHHhhhccc--chhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHH
Confidence            44677888899998887763  4445555555555543221111    1111 12355555555222 355555554555


Q ss_pred             HHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCc----HHHHHHhhcCCCHH
Q 008827          274 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG----VKLLVQLSKSMDST  349 (552)
Q Consensus       274 ~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~----i~~L~~ll~~~~~~  349 (552)
                      +...+. +.+... +..+.-......+++.+.=++...|..+...+..........++..+-    .+.--.++.+++--
T Consensus       150 rEcirh-e~Laki-iL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyv  227 (342)
T KOG1566|consen  150 RECIRH-EFLAKI-ILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYV  227 (342)
T ss_pred             HHHHhh-HHHHHH-HHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccccee
Confidence            555555 555544 667777888888888887788888888888876654433333443332    33456788999999


Q ss_pred             HHHHHHHHHHHhcccCCh--HhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827          350 IRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  407 (552)
Q Consensus       350 v~~~a~~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  407 (552)
                      ++..+..+++.+..+.++  ...+.+.+...+..+..+|++++..+|-+|.....-...+
T Consensus       228 tkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn  287 (342)
T KOG1566|consen  228 TKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN  287 (342)
T ss_pred             hHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence            999999999998664432  2334444455678889999999999999999888777655

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=92.60  E-value=0.88  Score=33.27  Aligned_cols=66  Identities=12%  Similarity=0.219  Sum_probs=49.9

Q ss_pred             HHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC-CChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCC
Q 008827          439 EIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS-NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAG  517 (552)
Q Consensus       439 ~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g  517 (552)
                      .+.++|+++++++... ....+ +      +.++++.++++-.+ +...+|-.|.++|+-++     .+.+..+.|.+.|
T Consensus         4 lKaaLWaighIgss~~-G~~lL-~------~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis-----~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPL-GIQLL-D------ESDIVEDIVKIAENSPVLSIRGTCFYVLGLIS-----STEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChH-HHHHH-h------hcCHHHHHHHHHHhCCccchHHHHHHHHHHHh-----CCHHHHHHHHHcC
Confidence            5689999999987443 34433 3      27899999998875 56789999999999888     4677777776655

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=92.41  E-value=9.3  Score=35.58  Aligned_cols=186  Identities=15%  Similarity=0.164  Sum_probs=112.8

Q ss_pred             hhhHHHHHHHHHHhhcCChhHHHHHHh-cccHHHHHH-------hcCCCC--HHHH---HHHHHHHHHhhcccccccchh
Q 008827          221 PRRFEGILLALADMCSKLECCRSRCLS-LQVLKLVVD-------ALAHDS--SDVR---SAACMCLRSVSRSIKNLSAGS  287 (552)
Q Consensus       221 ~~~~~~a~~aL~~l~~~~~~~~~~~~~-~~~l~~lv~-------~L~~~~--~~v~---~~a~~~L~~ls~~~~~~~~~~  287 (552)
                      ++.|+.|+.-|+.--..-++..-.+.. .|.+..+++       .+..++  +..-   ..+...+..++.+ +..|.. 
T Consensus         9 ~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~-   86 (262)
T PF04078_consen    9 PETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP-   86 (262)
T ss_dssp             HHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH-
T ss_pred             cchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH-
Confidence            567787777666543333444333333 354544433       233332  2222   3344445555665 666766 


Q ss_pred             hhccCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhhcC-CchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008827          288 FMNETIVIPLVRLLDDT-----STAVQVAALGAISNIVVD-FTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL  361 (552)
Q Consensus       288 ~~~~~~i~~Lv~lL~~~-----~~~v~~~a~~aL~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l  361 (552)
                      |.++.+.-.|.-+|+..     .+-+|-...+.++.++.. .++....+.+.+.+|..++.++.+++-.+..|...+..+
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            88888888888888633     357888999999999863 344566788899999999999999999999999998887


Q ss_pred             cccCCh-------HhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC
Q 008827          362 IFLAED-------KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  408 (552)
Q Consensus       362 ~~~~~~-------~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  408 (552)
                      ..++.-       ..|-.-+....-..+.++..++++.+....+++...++.+.
T Consensus       167 L~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp  220 (262)
T PF04078_consen  167 LLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP  220 (262)
T ss_dssp             HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred             HcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence            542110       01111111111222334556788888888888888888764

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.25  E-value=0.77  Score=47.89  Aligned_cols=133  Identities=14%  Similarity=0.168  Sum_probs=97.1

Q ss_pred             CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhh
Q 008827          389 PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRA  468 (552)
Q Consensus       389 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~  468 (552)
                      .|+.+|..|--.|..+-+-..   ++..+    -+|++...+..+++|.++.++.-.++.++.......+..        
T Consensus       908 sd~~lq~aA~l~L~klMClS~---~fc~e----hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~--------  972 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSF---EFCSE----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH--------  972 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhH---HHHHH----HHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH--------
Confidence            678888888877777654321   22222    378888888877999999999999999887443222222        


Q ss_pred             hhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhc
Q 008827          469 ENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  548 (552)
Q Consensus       469 ~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~  548 (552)
                          -..|.+-|.+.+..||+.|..++.++...   |      .+.-.|-++.+..+++|++....+-|..-+..|+.=+
T Consensus       973 ----t~yLyrrL~De~~~V~rtclmti~fLila---g------q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098         973 ----THYLYRRLGDEDADVRRTCLMTIHFLILA---G------QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred             ----HHHHHHHhcchhhHHHHHHHHHHHHHHHc---c------ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence                25678888999999999999999999851   2      2334577788888999888888888877777766544


Q ss_pred             C
Q 008827          549 D  549 (552)
Q Consensus       549 ~  549 (552)
                      +
T Consensus      1040 N 1040 (1128)
T COG5098        1040 N 1040 (1128)
T ss_pred             c
Confidence            3

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=92.03  E-value=12  Score=36.87  Aligned_cols=160  Identities=18%  Similarity=0.154  Sum_probs=110.3

Q ss_pred             HHHHHhhhcCCChhHHHHHHHHHHHhhc-CCcchHHHHHhhcCchHHHHHHHhccc----Cc--------hhHHHHHHH-
Q 008827          379 ASLLASLICDPEPSVQEQALALVRNLVD-GRINSVEYIFAEDGIILDAVGRQLRIA----SK--------AEIEIQGMY-  444 (552)
Q Consensus       379 ~~~l~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~~~~~~~~l~~~L~~~----~~--------~~v~~~a~~-  444 (552)
                      +..+.+.|.+....+...++.+|..+.. ........+++.-+.-.+.+.+++...    .+        +.+|...+. 
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7788888888889999999999999988 655666777665443455666666321    01        267776555 


Q ss_pred             HHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHh
Q 008827          445 VLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKN  524 (552)
Q Consensus       445 ~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~  524 (552)
                      +|..+..+++..+..++++      .+.+..+.+.|..++.++......++..-...+..-.+.....+.....+..|..
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~------~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~  211 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQ------KKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS  211 (330)
T ss_pred             HHHHHccCCHHHHHHHHHc------CchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH
Confidence            5666666777778888874      6778889999988888888888888876554323233444555666678888999


Q ss_pred             hhcCCCc----cHHHHHHHHHHHH
Q 008827          525 MVNDPCL----DVKLRVKTALEQF  544 (552)
Q Consensus       525 ll~~~~~----~v~~~a~~al~~~  544 (552)
                      +.....+    .+++.|..-|..+
T Consensus       212 Ly~~~~~~~~~~~~~~vh~fL~~l  235 (330)
T PF11707_consen  212 LYSRDGEDEKSSVADLVHEFLLAL  235 (330)
T ss_pred             HhcccCCcccchHHHHHHHHHHHH
Confidence            7654444    5666665555443

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=91.70  E-value=11  Score=40.87  Aligned_cols=170  Identities=19%  Similarity=0.175  Sum_probs=100.2

Q ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC----CCHHHHHHHHHHHHHhhcCCch
Q 008827          250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD----TSTAVQVAALGAISNIVVDFTT  325 (552)
Q Consensus       250 ~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~----~~~~v~~~a~~aL~nl~~~~~~  325 (552)
                      .+..+.+++......-.. +...+..+......      -....+..+..+++.    .++.++..|.-+++.++.....
T Consensus       396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~------Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRR------PTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCC------CCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            466677777664432222 34445555443111      123456667777764    3677888888888877653222


Q ss_pred             hH---------HHHHhhCcHHHHHHhhc----CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCC---
Q 008827          326 RR---------STFIRLGGVKLLVQLSK----SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDP---  389 (552)
Q Consensus       326 ~~---------~~~~~~g~i~~L~~ll~----~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~---  389 (552)
                      ..         ........++.+...+.    ..+...+..++.||+|+...            ..++.+..++.+.   
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~------------~~i~~l~~~i~~~~~~  536 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP------------ESIPVLLPYIEGKEEV  536 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G------------GGHHHHHTTSTTSS-S
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc------------hhhHHHHhHhhhcccc
Confidence            11         11122345555555544    45778889999999999431            2577888888765   


Q ss_pred             ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-cCchhHHHHHHHHHHh
Q 008827          390 EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-ASKAEIEIQGMYVLGN  448 (552)
Q Consensus       390 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~-~~~~~v~~~a~~~L~~  448 (552)
                      +..++..|+++|+.+....++.          +.+.+.+++.+ ..++++|..|..+|..
T Consensus       537 ~~~~R~~Ai~Alr~~~~~~~~~----------v~~~l~~I~~n~~e~~EvRiaA~~~lm~  586 (618)
T PF01347_consen  537 PHFIRVAAIQALRRLAKHCPEK----------VREILLPIFMNTTEDPEVRIAAYLILMR  586 (618)
T ss_dssp             -HHHHHHHHHTTTTGGGT-HHH----------HHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhcCcHH----------HHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence            6789999999999997776543          44555565554 3567899999888775

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=91.36  E-value=19  Score=38.59  Aligned_cols=136  Identities=18%  Similarity=0.171  Sum_probs=86.1

Q ss_pred             CcHHHHHHhhcCC----CHHHHHHHHHHHHHhhcCCchhHH---HHHhhCcHHHHHHhhc----CCCHHHHHHHHHHHHH
Q 008827          292 TIVIPLVRLLDDT----STAVQVAALGAISNIVVDFTTRRS---TFIRLGGVKLLVQLSK----SMDSTIRLNALRALRN  360 (552)
Q Consensus       292 ~~i~~Lv~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~~---~~~~~g~i~~L~~ll~----~~~~~v~~~a~~aL~~  360 (552)
                      ..+..+..+++++    ++.++..|.-+++.++........   ..+....++.+.+.+.    ..+...+...+.+|+|
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            4567788888653    567888888888877642111110   1112345666665554    3456667889999999


Q ss_pred             hcccCChHhHHHHHHhhcHHHHHhhhc---CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-cCch
Q 008827          361 LIFLAEDKCKEEIFMELTASLLASLIC---DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-ASKA  436 (552)
Q Consensus       361 l~~~~~~~~~~~i~~~~~~~~l~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~-~~~~  436 (552)
                      +....            .++.+..++.   ..+..++..|+++|++++...++.          +-+.+.+++.+ ..++
T Consensus       473 ~g~~~------------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~----------v~~~l~~i~~n~~e~~  530 (574)
T smart00638      473 AGHPS------------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK----------VQEVLLPIYLNRAEPP  530 (574)
T ss_pred             cCChh------------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH----------HHHHHHHHHcCCCCCh
Confidence            95421            2444444454   345679999999999998766654          33444555544 3577


Q ss_pred             hHHHHHHHHHHhh
Q 008827          437 EIEIQGMYVLGNV  449 (552)
Q Consensus       437 ~v~~~a~~~L~~l  449 (552)
                      ++|..|+.+|...
T Consensus       531 EvRiaA~~~lm~t  543 (574)
T smart00638      531 EVRMAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHHHHhc
Confidence            8999998888753

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=91.35  E-value=17  Score=36.37  Aligned_cols=95  Identities=21%  Similarity=0.121  Sum_probs=61.3

Q ss_pred             cCCCChhhHHHHHHHHHHhhcCChhH------------HHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc
Q 008827          216 KGSLHPRRFEGILLALADMCSKLECC------------RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL  283 (552)
Q Consensus       216 ~~~~~~~~~~~a~~aL~~l~~~~~~~------------~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~  283 (552)
                      ++..+++.+..|+..++.++......            -..+....++|-|. -=.+..+-++..|++.+..+....+. 
T Consensus       264 ~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~-  341 (370)
T PF08506_consen  264 NPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK-  341 (370)
T ss_dssp             -TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H-
T ss_pred             CCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH-
Confidence            34456788899999999998754221            12333344555554 11245677899999999888665322 


Q ss_pred             cchhhhccCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827          284 SAGSFMNETIVIPLVRLLDDTSTAVQVAALGAI  316 (552)
Q Consensus       284 ~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL  316 (552)
                        .  .-.+++|.++..|.+++.-|...|+.++
T Consensus       342 --~--~l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  342 --E--QLLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             --H--HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             --H--HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence              2  3347899999999999999999988775

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=91.04  E-value=5.2  Score=43.96  Aligned_cols=176  Identities=15%  Similarity=0.129  Sum_probs=115.7

Q ss_pred             ChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHH-hcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHH
Q 008827          220 HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD-ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLV  298 (552)
Q Consensus       220 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~-~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv  298 (552)
                      ++.-|..|+..+........ ........|.+-.+.. .+.+.+..+...++.+|..++.........  ...++.|.++
T Consensus       266 ~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~--~~~~v~p~ll  342 (815)
T KOG1820|consen  266 KWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK--YAKNVFPSLL  342 (815)
T ss_pred             chHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH--HHHhhcchHH
Confidence            35567777777776664322 0001111223333333 334778899999999999998765444333  4467888899


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhc
Q 008827          299 RLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELT  378 (552)
Q Consensus       299 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~  378 (552)
                      .-+.+....++..+..++-.+...+..       ....+.+...+++.++.++......+.......++.+-..-.-...
T Consensus       343 d~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l  415 (815)
T KOG1820|consen  343 DRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTL  415 (815)
T ss_pred             HHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHH
Confidence            999888888888887777655542221       2456778889999999999998777776655443211111112346


Q ss_pred             HHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827          379 ASLLASLICDPEPSVQEQALALVRNLV  405 (552)
Q Consensus       379 ~~~l~~ll~~~~~~v~~~a~~~L~~l~  405 (552)
                      .+.++....|.+.+|+..+..++.-+.
T Consensus       416 ~p~~~~~~~D~~~~VR~Aa~e~~~~v~  442 (815)
T KOG1820|consen  416 VPHLIKHINDTDKDVRKAALEAVAAVM  442 (815)
T ss_pred             hHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence            788888899999999999988877664

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.93  E-value=1.3  Score=41.91  Aligned_cols=140  Identities=19%  Similarity=0.217  Sum_probs=94.6

Q ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 008827          250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST  329 (552)
Q Consensus       250 ~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~  329 (552)
                      .+...+..|.+++|.....+...++.|+.-++.....  .-+.++..+++-+++....|-..|+.+++.+......   .
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~--~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~---~  163 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNP--MLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN---S  163 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---H
Confidence            3555677888889999988888888887654432222  2245667777788888889999999999988764433   2


Q ss_pred             HHhhCcHHHHH-HhhcC---CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHh
Q 008827          330 FIRLGGVKLLV-QLSKS---MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL  404 (552)
Q Consensus       330 ~~~~g~i~~L~-~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l  404 (552)
                      +.+  .+..++ .|++.   ++.-+++.|-.+|..++.+..|        ...++.|...+.+.++.++..++..+.+.
T Consensus       164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp--------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~  232 (334)
T KOG2933|consen  164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP--------QKLLRKLIPILQHSNPRVRAKAALCFSRC  232 (334)
T ss_pred             HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh--------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence            332  233333 33333   4566899999999999886654        22455566667778888887776554444

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=90.89  E-value=2.5  Score=43.15  Aligned_cols=156  Identities=18%  Similarity=0.170  Sum_probs=112.2

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCCchh
Q 008827          251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS----TAVQVAALGAISNIVVDFTTR  326 (552)
Q Consensus       251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~----~~v~~~a~~aL~nl~~~~~~~  326 (552)
                      ...+.+.+.+++..-+..+.+-+..++.... .... |+...++..|.++..+.+    .++......+++.+..... .
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~e-fi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-v  161 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDPT-FAEE-FIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-V  161 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHH-HHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-e
Confidence            4556788888888888889999999987733 3334 778888999999998653    4777788888877764321 1


Q ss_pred             HHHHHhhCcHHHHHHhhc--CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHh
Q 008827          327 RSTFIRLGGVKLLVQLSK--SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL  404 (552)
Q Consensus       327 ~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l  404 (552)
                      .........+.....+..  ..+..+-..|+..|-++..++ +..+..+.++-.++.++..+...+..++.+|+..+..+
T Consensus       162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s-~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal  240 (713)
T KOG2999|consen  162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGS-DTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL  240 (713)
T ss_pred             eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCC-hHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            111222233444444432  234556777888888887744 45788888888999999999999999999999999998


Q ss_pred             hcCCcc
Q 008827          405 VDGRIN  410 (552)
Q Consensus       405 ~~~~~~  410 (552)
                      ....++
T Consensus       241 ~~~a~~  246 (713)
T KOG2999|consen  241 FRKAPD  246 (713)
T ss_pred             HhhCCh
Confidence            876554

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=90.78  E-value=19  Score=35.99  Aligned_cols=151  Identities=12%  Similarity=0.123  Sum_probs=88.0

Q ss_pred             hHHHHHHhhcHHHHHhhhcCCC-hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhc-----ccCchhHHHHH
Q 008827          369 CKEEIFMELTASLLASLICDPE-PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLR-----IASKAEIEIQG  442 (552)
Q Consensus       369 ~~~~i~~~~~~~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~-----~~~~~~v~~~a  442 (552)
                      .-.++.+..-.+.+-+-+...| ..-+..|..+++.++...+.....++      ...+..+|+     .+.++.-+..|
T Consensus       202 ~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~------~~~i~~~l~~y~~~~~~~w~~KD~A  275 (370)
T PF08506_consen  202 EDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL------MQYIQQLLQQYASNPSNNWRSKDGA  275 (370)
T ss_dssp             HHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-TTT-HHHHHHH
T ss_pred             HHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH------HHHHHHHHHHHhhCCcccHHHHHHH
Confidence            4456666666677766666444 44777888999999865333222222      233333443     23567888899


Q ss_pred             HHHHHhhcCCChh------------hHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHH
Q 008827          443 MYVLGNVATGKES------------HKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRL  510 (552)
Q Consensus       443 ~~~L~~la~~~~~------------~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~  510 (552)
                      +..++.++.....            ....++.       .-++|-|. -=.+..+-+|..|++.+..+-.   .-+.+. 
T Consensus       276 l~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~-------~~v~peL~-~~~~~~piLka~aik~~~~Fr~---~l~~~~-  343 (370)
T PF08506_consen  276 LYLIGALASKGSTTKSGVTQTNELVDVVDFFS-------QHVLPELQ-PDVNSHPILKADAIKFLYTFRN---QLPKEQ-  343 (370)
T ss_dssp             HHHHHHHHBSS--BTTB-S-B-TTS-HHHHHH-------HHTCHHHH--SS-S-HHHHHHHHHHHHHHGG---GS-HHH-
T ss_pred             HHHHHHHHhhhccccCCcccccccccHHHHHH-------HHhHHHhc-ccCCCCcchHHHHHHHHHHHHh---hCCHHH-
Confidence            9999999874421            1122222       22333332 1113567799999999998873   223322 


Q ss_pred             HHHHHCCcHHHHHhhhcCCCccHHHHHHHHH
Q 008827          511 VKLHDAGIVSHVKNMVNDPCLDVKLRVKTAL  541 (552)
Q Consensus       511 ~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al  541 (552)
                          -.++++.+.+.+.+++.-|+-.|+.|+
T Consensus       344 ----l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  344 ----LLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             ----HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence                234689999999988888888877764

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=90.78  E-value=20  Score=36.07  Aligned_cols=101  Identities=13%  Similarity=0.207  Sum_probs=76.4

Q ss_pred             hhc-cCcHHHHHHhhcCC---CHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc-C---CCHHHHHHHHHHHH
Q 008827          288 FMN-ETIVIPLVRLLDDT---STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-S---MDSTIRLNALRALR  359 (552)
Q Consensus       288 ~~~-~~~i~~Lv~lL~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~---~~~~v~~~a~~aL~  359 (552)
                      +.+ ......|-.++++.   .+.+...|+..+..+..+.+..-..+.+.|.++.+++.+. .   ++.++-...-.+++
T Consensus       101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~  180 (379)
T PF06025_consen  101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS  180 (379)
T ss_pred             ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence            455 45566677777765   5789999999999999888888888999999999998877 4   34555555556777


Q ss_pred             HhcccCChHhHHHHHHhhcHHHHHhhhcCCC
Q 008827          360 NLIFLAEDKCKEEIFMELTASLLASLICDPE  390 (552)
Q Consensus       360 ~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~  390 (552)
                      .+|-+  ..-.+.+.+...++.+++++.+++
T Consensus       181 AicLN--~~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  181 AICLN--NRGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             HHhcC--HHHHHHHHhcChHHHHHHHhCCHH
Confidence            77763  346677778888999999887654

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=90.67  E-value=8.4  Score=34.04  Aligned_cols=143  Identities=19%  Similarity=0.233  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHhhccc-ccccch---hh------hccCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHh-
Q 008827          265 VRSAACMCLRSVSRSI-KNLSAG---SF------MNETIVIPLVR-LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR-  332 (552)
Q Consensus       265 v~~~a~~~L~~ls~~~-~~~~~~---~~------~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~-  332 (552)
                      +|..|..+|..+++.. +..-..   .+      ...+.-+.|+. +++|+++.+|..|+.++..+..+...+-...-+ 
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            6778888888887662 111000   01      12334445555 557999999999999999998775432211110 


Q ss_pred             ------------------hCcHHHHHHhhcCC-CHHHHHHHHHHHHHhcccCChH-hHHHHHHhhcHHHHHhhhcCCChh
Q 008827          333 ------------------LGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAEDK-CKEEIFMELTASLLASLICDPEPS  392 (552)
Q Consensus       333 ------------------~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~-~~~~i~~~~~~~~l~~ll~~~~~~  392 (552)
                                        ...-..|+..++.+ +..+....++++..+....+-+ .+..++. ..+..+..++.+.|++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~-~~v~~v~~~l~~~d~~  160 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLT-EVVTQVRPLLRHRDPN  160 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHH-HHHHHHHHHHhcCCCc
Confidence                              01233445555554 5667778888888887654311 2222222 2456666777889999


Q ss_pred             HHHHHHHHHHHhhcCC
Q 008827          393 VQEQALALVRNLVDGR  408 (552)
Q Consensus       393 v~~~a~~~L~~l~~~~  408 (552)
                      ++..++.+++-+....
T Consensus       161 v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  161 VRVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999988888876543

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=90.33  E-value=2.2  Score=38.02  Aligned_cols=80  Identities=18%  Similarity=0.122  Sum_probs=57.7

Q ss_pred             HHHHHHHhCcHHHHHHhhhcCC-------CChhhHHHHHHHHHHhhcCChhHHHHHH-hcccHHHHHHhcCCCCHHHHHH
Q 008827          197 MQKLAFEVNGVDKLYNHLQKGS-------LHPRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVDALAHDSSDVRSA  268 (552)
Q Consensus       197 ~~~~~~~~~~i~~L~~~L~~~~-------~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~lv~~L~~~~~~v~~~  268 (552)
                      --+.+++.||+..|++.|..-.       .+......++++|..+.... ..+..+. ..+++..+...|.+++..+|..
T Consensus        99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~-~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~  177 (187)
T PF06371_consen   99 WVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK-YGLEAVLSHPDSVNLIALSLDSPNIKTRKL  177 (187)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH-HHHHHHHCSSSHHHHHHHT--TTSHHHHHH
T ss_pred             HHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH-HHHHHHHcCcHHHHHHHHHHCCCCHHHHHH
Confidence            3455778899998888775431       23456778899999988543 4444444 4679999999999999999999


Q ss_pred             HHHHHHHhh
Q 008827          269 ACMCLRSVS  277 (552)
Q Consensus       269 a~~~L~~ls  277 (552)
                      ++..|..++
T Consensus       178 ~leiL~~lc  186 (187)
T PF06371_consen  178 ALEILAALC  186 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988765

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=90.23  E-value=1.4  Score=34.08  Aligned_cols=70  Identities=19%  Similarity=0.158  Sum_probs=56.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccC
Q 008827          294 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLA  365 (552)
Q Consensus       294 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  365 (552)
                      ....+..+.++.+.+|..+...|+++.....  .......+++..+...++++++-+-.+|+.+|..++...
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~   74 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH   74 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence            4456677889999999999999999997655  112233567888889999999999999999999998744

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=90.07  E-value=17  Score=38.72  Aligned_cols=142  Identities=16%  Similarity=0.175  Sum_probs=94.4

Q ss_pred             HHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCC
Q 008827          374 FMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK  453 (552)
Q Consensus       374 ~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~  453 (552)
                      +.+.+++.|..-+++.+..+|+.++..+.++++.-+   -..+.+.  +++.+..+--.+.+..++..++.+++-+...-
T Consensus       386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~--ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l  460 (700)
T KOG2137|consen  386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQA--ILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL  460 (700)
T ss_pred             HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHH--HHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence            345577888888999999999999999998876532   1222222  66777665444578889999999999888321


Q ss_pred             hhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccH
Q 008827          454 ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDV  533 (552)
Q Consensus       454 ~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v  533 (552)
                      .  +..+++         .+..+.+..+..++.+......+.-++....-+|     +......++|.++.+...+...+
T Consensus       461 D--~~~v~d---------~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-----~ev~~~~VlPlli~ls~~~~L~~  524 (700)
T KOG2137|consen  461 D--KAAVLD---------ELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-----VEVMAENVLPLLIPLSVAPSLNG  524 (700)
T ss_pred             H--HHHhHH---------HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-----eeeehhhhhhhhhhhhhcccccH
Confidence            1  333432         2456677777888888888888777777532222     33445567777777765545554


Q ss_pred             HHH
Q 008827          534 KLR  536 (552)
Q Consensus       534 ~~~  536 (552)
                      ...
T Consensus       525 ~Qy  527 (700)
T KOG2137|consen  525 EQY  527 (700)
T ss_pred             HHH
Confidence            444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=90.03  E-value=33  Score=37.55  Aligned_cols=194  Identities=15%  Similarity=0.150  Sum_probs=110.1

Q ss_pred             HHHHhhcccccccchhhhccCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhHHHHHhhC-cHHHHHHhhcCCCH-
Q 008827          272 CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-TSTAVQVAALGAISNIVVDFTTRRSTFIRLG-GVKLLVQLSKSMDS-  348 (552)
Q Consensus       272 ~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g-~i~~L~~ll~~~~~-  348 (552)
                      ++++.+...+..|.. +.+.+++..+...++. .+.+++..+.+.+.|++...+.......... -...+-.++...+. 
T Consensus       494 ~l~~~t~~~~~~C~~-~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKE-FLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHH-HHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence            888999888888888 8999999999999973 6778999999999999864432211111110 11233334444444 


Q ss_pred             HHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHH-HH
Q 008827          349 TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDA-VG  427 (552)
Q Consensus       349 ~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~-l~  427 (552)
                      +.-.++...|+.+...++. .    .+....+           .+.+--..++......   .+..+.. .  .+.. +.
T Consensus       573 ersY~~~siLa~ll~~~~~-~----~~~~~r~-----------~~~~~l~e~i~~~~~~---~~~~~~~-~--~f~~~~~  630 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEK-T----TECVFRN-----------SVNELLVEAISRWLTS---EIRVIND-R--SFFPRIL  630 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCc-C----ccccchH-----------HHHHHHHHHhhccCcc---ceeehhh-h--hcchhHH
Confidence            6666777777777654331 0    0000000           1111111111111111   0100110 0  2233 55


Q ss_pred             HHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC-CChhHHHHHHHHH
Q 008827          428 RQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS-NDSRLRTAAVWAV  495 (552)
Q Consensus       428 ~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~-~~~~~~~~a~~~l  495 (552)
                      +++..+..+..+..|.|++.++....++....+.+       .++++.+.+.-.. ...+++..+...+
T Consensus       631 ~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i  692 (699)
T KOG3665|consen  631 RILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRE-------SNGFELIENIRVLSEVVDVKEEAVLVI  692 (699)
T ss_pred             HHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHh-------ccchhhhhhcchhHHHHHHHHHHHHHh
Confidence            66666677889999999999999987776665654       5666665554322 2344555554443

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=89.87  E-value=19  Score=38.69  Aligned_cols=194  Identities=19%  Similarity=0.228  Sum_probs=108.5

Q ss_pred             HHHHHHhhhcCCCChhhHHHHHHHHHHhhc-CChhHHHHHHhcccHHHHHHhcCCC----CHHHHHHHHHHHHHhhccc-
Q 008827          207 VDKLYNHLQKGSLHPRRFEGILLALADMCS-KLECCRSRCLSLQVLKLVVDALAHD----SSDVRSAACMCLRSVSRSI-  280 (552)
Q Consensus       207 i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~~l~~lv~~L~~~----~~~v~~~a~~~L~~ls~~~-  280 (552)
                      +..+.+.+......+......+..+..... -++         ..+..+.++++++    .+.++..+.-+++++.+.. 
T Consensus       359 ~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~---------~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c  429 (574)
T smart00638      359 LKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTE---------EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYC  429 (574)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCH---------HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHh
Confidence            556666676654333223333333333322 122         2466677777643    5567888888888776521 


Q ss_pred             ccc--cchhhhccCcHHHHHHhhc----CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc---CCCHHHH
Q 008827          281 KNL--SAGSFMNETIVIPLVRLLD----DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK---SMDSTIR  351 (552)
Q Consensus       281 ~~~--~~~~~~~~~~i~~Lv~lL~----~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~v~  351 (552)
                      .+.  +.. .....+++.+...|.    ..+.+.+..+..+|+|+-..           ..++.+..++.   ..+..+|
T Consensus       430 ~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~-----------~~i~~l~~~l~~~~~~~~~iR  497 (574)
T smart00638      430 VNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP-----------SSIKVLEPYLEGAEPLSTFIR  497 (574)
T ss_pred             cCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh-----------hHHHHHHHhcCCCCCCCHHHH
Confidence            110  101 223456777777664    34666778889999987642           23344444444   2357899


Q ss_pred             HHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc--CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHH
Q 008827          352 LNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQ  429 (552)
Q Consensus       352 ~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~  429 (552)
                      ..|+++|..++...+.         .+.+.++.+..  +.+++++..|..+|-.   .+|.. .        .+..+...
T Consensus       498 ~~Av~Alr~~a~~~p~---------~v~~~l~~i~~n~~e~~EvRiaA~~~lm~---t~P~~-~--------~l~~ia~~  556 (574)
T smart00638      498 LAAILALRNLAKRDPR---------KVQEVLLPIYLNRAEPPEVRMAAVLVLME---TKPSV-A--------LLQRIAEL  556 (574)
T ss_pred             HHHHHHHHHHHHhCch---------HHHHHHHHHHcCCCCChHHHHHHHHHHHh---cCCCH-H--------HHHHHHHH
Confidence            9999999988753332         23345555554  4567788777655433   22321 0        45566666


Q ss_pred             hcccCchhHHHHH
Q 008827          430 LRIASKAEIEIQG  442 (552)
Q Consensus       430 L~~~~~~~v~~~a  442 (552)
                      +..+++.+|....
T Consensus       557 l~~E~~~QV~sfv  569 (574)
T smart00638      557 LNKEPNLQVASFV  569 (574)
T ss_pred             HhhcCcHHHHHHh
Confidence            6665555555443

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=89.81  E-value=14  Score=32.92  Aligned_cols=144  Identities=19%  Similarity=0.265  Sum_probs=88.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcccC--ChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHH
Q 008827          336 VKLLVQLSKSMDSTIRLNALRALRNLIFLA--EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVE  413 (552)
Q Consensus       336 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  413 (552)
                      ++.++++..+++..+|..|+..+.-+....  .|        ...+|.++.|..|+++.++..|...+..+....+..+.
T Consensus        10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--------~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~   81 (187)
T PF12830_consen   10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNP--------KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE   81 (187)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--------HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence            466777888899999999999988775531  22        12578899999999999999999999999887766555


Q ss_pred             HHHhhcC-chHHHHHHHhcccCchhH---HHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC------
Q 008827          414 YIFAEDG-IILDAVGRQLRIASKAEI---EIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN------  483 (552)
Q Consensus       414 ~i~~~~~-~~~~~l~~~L~~~~~~~v---~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~------  483 (552)
                      .-+.+|- ..+..- +.+..+.....   ....+..+..+..++..+|..++.            .|++.+...      
T Consensus        82 ~~~~~gi~~af~~~-~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~------------~l~k~f~~~~~~~~~  148 (187)
T PF12830_consen   82 SRYSEGIRLAFDYQ-RRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK------------SLLKQFDFDLTKLSS  148 (187)
T ss_pred             HHHHHHHHHHHHHH-HHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH------------HHHHHHHhhcccccc
Confidence            4444430 011111 11221111111   445555555666555566766663            334433321      


Q ss_pred             --ChhHHHHHHHHHHhhcC
Q 008827          484 --DSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       484 --~~~~~~~a~~~l~~l~~  500 (552)
                        ...-.....++.-|++.
T Consensus       149 ~~~~~~l~~~~Fla~nLA~  167 (187)
T PF12830_consen  149 ESSPSDLDFLLFLAENLAT  167 (187)
T ss_pred             ccchhHHHHHHHHHHHHhc
Confidence              23344556667777774

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.36  E-value=9.9  Score=40.23  Aligned_cols=149  Identities=17%  Similarity=0.213  Sum_probs=94.6

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcccCChHh----HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchH
Q 008827          337 KLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC----KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV  412 (552)
Q Consensus       337 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~----~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  412 (552)
                      |.|.+-|+..|..||.+|+..+-++---.+|+.    .+.+++. -...+..+|+++-+.|+..|..-+.....--.+.+
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i  255 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI  255 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            455666788899999999999988865444543    3333332 35678899999999999877654444432100000


Q ss_pred             -HHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHH
Q 008827          413 -EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAA  491 (552)
Q Consensus       413 -~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a  491 (552)
                       ..++.+   ++..+..-+......+|+......|..++..+.  .-.+++        -++|++-..|+++...||.++
T Consensus       256 P~~i~~~---ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~--sh~~le--------~~Lpal~~~l~D~se~VRvA~  322 (1005)
T KOG1949|consen  256 PPTILID---LLKKITDELAFDTSSDVRCSVFKGLPMILDNPL--SHPLLE--------QLLPALRYSLHDNSEKVRVAF  322 (1005)
T ss_pred             CHHHHHH---HHHHHHHHhhhccchheehhHhcCcHHHHcCcc--chhHHH--------HHHHhcchhhhccchhHHHHH
Confidence             001100   223333333333556888888888888887543  334554        234677778888899999999


Q ss_pred             HHHHHhhc
Q 008827          492 VWAVLNLT  499 (552)
Q Consensus       492 ~~~l~~l~  499 (552)
                      .-.|..+-
T Consensus       323 vd~ll~ik  330 (1005)
T KOG1949|consen  323 VDMLLKIK  330 (1005)
T ss_pred             HHHHHHHH
Confidence            98887765

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=89.33  E-value=39  Score=37.38  Aligned_cols=238  Identities=10%  Similarity=0.138  Sum_probs=133.2

Q ss_pred             hccCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc----CCC----HHHHHHHH
Q 008827          289 MNETIVIPLVRLLDD-----TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK----SMD----STIRLNAL  355 (552)
Q Consensus       289 ~~~~~i~~Lv~lL~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~----~~~----~~v~~~a~  355 (552)
                      .+.|++..++.++.+     .+.+........|...+ .-..+|+.+++.|+++.|++.+.    .+.    ..+-+..+
T Consensus       114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            455888888888863     24456666666665555 44678889999999999998764    333    56666666


Q ss_pred             HHHHHhcccCChHhH---HHHH--------HhhcHHHHHhhhcC----CChhHHHHHHHHHHHhhcCCcchHHHHHhhcC
Q 008827          356 RALRNLIFLAEDKCK---EEIF--------MELTASLLASLICD----PEPSVQEQALALVRNLVDGRINSVEYIFAEDG  420 (552)
Q Consensus       356 ~aL~~l~~~~~~~~~---~~i~--------~~~~~~~l~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~  420 (552)
                      ..+..+......+..   ....        ....+..+++.+.+    .++.+....+++|.+|+.++++..+.+++   
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~---  269 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE---  269 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH---
Confidence            666666442221100   0000        11125555555554    36889999999999999998876666544   


Q ss_pred             chHHHHHHHhcc-------cCchhHHHHHHH-HHHhhcCCC--hhhHHHHHHHhhHhhhhhhHHHHHHhhcCCCh-----
Q 008827          421 IILDAVGRQLRI-------ASKAEIEIQGMY-VLGNVATGK--ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS-----  485 (552)
Q Consensus       421 ~~~~~l~~~L~~-------~~~~~v~~~a~~-~L~~la~~~--~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~-----  485 (552)
                          .+...++-       .++..+...++. +..++-...  ...++.+++       .|++...+++|...-+     
T Consensus       270 ----~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-------~GIv~~a~~YL~~~~P~~~~~  338 (802)
T PF13764_consen  270 ----HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-------SGIVQDAIDYLLKHFPSLKNT  338 (802)
T ss_pred             ----HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-------hhHHHHHHHHHHHhCcccccC
Confidence                33333321       012222222222 222222211  245667776       7998888888865322     


Q ss_pred             ---hHH--------HHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcC-CCccHHHHHHHHHHHHhh
Q 008827          486 ---RLR--------TAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVND-PCLDVKLRVKTALEQFNS  546 (552)
Q Consensus       486 ---~~~--------~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~-~~~~v~~~a~~al~~~~~  546 (552)
                         +-+        ..+...|.-++.    |... .+.+...+.++.+..|-+- +...+-..|...|..+.+
T Consensus       339 ~s~eWk~~l~~psLp~iL~lL~GLa~----gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  339 DSPEWKEFLSRPSLPYILRLLRGLAR----GHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             CCHHHHHHhcCCcHHHHHHHHHHHHh----cCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence               111        224555556664    2222 3344567777666666432 234554455555544443

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=89.28  E-value=4.4  Score=41.76  Aligned_cols=103  Identities=16%  Similarity=0.129  Sum_probs=74.2

Q ss_pred             cccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 008827          248 LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR  327 (552)
Q Consensus       248 ~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~  327 (552)
                      .|.+.++++.+.+++..||+..+..|+.++.....+-.  ..-.|.+..|..-+-+..+.||..|+.+|+.+-....+-.
T Consensus        90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe--~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee  167 (885)
T COG5218          90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE--VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE  167 (885)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence            47888899999999999999999999999887554332  2456777888888888899999999999998753222111


Q ss_pred             HHHHhhCcHHHHHHhhcC-CCHHHHHHHHHH
Q 008827          328 STFIRLGGVKLLVQLSKS-MDSTIRLNALRA  357 (552)
Q Consensus       328 ~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~a  357 (552)
                           ......|..+++. ++.+||..|+.-
T Consensus       168 -----n~~~n~l~~~vqnDPS~EVRr~alln  193 (885)
T COG5218         168 -----NRIVNLLKDIVQNDPSDEVRRLALLN  193 (885)
T ss_pred             -----HHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence                 1233455555554 567788776543

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.88  E-value=50  Score=39.52  Aligned_cols=110  Identities=18%  Similarity=0.138  Sum_probs=67.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCChHhHHH
Q 008827          294 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEE  372 (552)
Q Consensus       294 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~  372 (552)
                      ...++..+..+++..+..+..+++.++...+..  . .-++..+.++.-+++ .++..|..-.-+++.+-++...-...+
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~-f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q  954 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--P-FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ  954 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--c-hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence            444566667789999999999999988654431  1 223556666666665 456666666667777654322100111


Q ss_pred             HHHhhcHHHHHhhhcCCC-hhHHHHHHHHHHHhhcC
Q 008827          373 IFMELTASLLASLICDPE-PSVQEQALALVRNLVDG  407 (552)
Q Consensus       373 i~~~~~~~~l~~ll~~~~-~~v~~~a~~~L~~l~~~  407 (552)
                      .. ...+..++.+.+++. |.||+.++.++.-+.+.
T Consensus       955 hl-~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s  989 (2067)
T KOG1822|consen  955 HL-NTSVSILLALATDSTSPVVQTWSLHALALILDS  989 (2067)
T ss_pred             hc-ccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcC
Confidence            11 123556777776654 58999888888777654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=88.61  E-value=42  Score=36.83  Aligned_cols=141  Identities=14%  Similarity=0.161  Sum_probs=79.9

Q ss_pred             CHHHHHHHHHHHHHhhcCCchhHHHHHhh--------CcHHHHHHhhcC----CCHHHHHHHHHHHHHhcccCChHhHHH
Q 008827          305 STAVQVAALGAISNIVVDFTTRRSTFIRL--------GGVKLLVQLSKS----MDSTIRLNALRALRNLIFLAEDKCKEE  372 (552)
Q Consensus       305 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~~--------g~i~~L~~ll~~----~~~~v~~~a~~aL~~l~~~~~~~~~~~  372 (552)
                      ..++...|...|+.+..- ++.+..+.+.        .++..++.....    -+++++..|+..+.|+.+. +|+++..
T Consensus       622 R~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~-pp~~r~s  699 (1516)
T KOG1832|consen  622 RHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCP-PPTTRPS  699 (1516)
T ss_pred             chHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecC-CCCcchh
Confidence            356777888888766643 3444344322        144444443332    2789999999999999873 4566654


Q ss_pred             HHHhhc----HHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccc----CchhHHHHHHH
Q 008827          373 IFMELT----ASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA----SKAEIEIQGMY  444 (552)
Q Consensus       373 i~~~~~----~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~----~~~~v~~~a~~  444 (552)
                      .+..-+    -+... +=..+.....++.+.-.++...+++            =+..|+++|+--    .-+.++.-||.
T Consensus       700 ~i~~v~S~~g~~r~~-l~~~~ks~~le~~l~~mw~~Vr~nd------------GIkiLl~Ll~~k~P~t~aD~IRalAc~  766 (1516)
T KOG1832|consen  700 TIVAVGSQSGDRRIF-LGAGTKSAKLEQVLRQMWEAVRGND------------GIKILLKLLQYKNPPTTADCIRALACR  766 (1516)
T ss_pred             hhhhccccCCCcccc-ccCCCchHHHHHHHHHHHHHHhcCc------------cHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence            432211    01000 0012223455666666666665543            255566666531    12468899999


Q ss_pred             HHHhhcCCChhhHHHHHH
Q 008827          445 VLGNVATGKESHKEAVMD  462 (552)
Q Consensus       445 ~L~~la~~~~~~~~~i~~  462 (552)
                      +|.-++..++  ...|+.
T Consensus       767 ~L~GLaR~~t--VrQIlt  782 (1516)
T KOG1832|consen  767 VLLGLARDDT--VRQILT  782 (1516)
T ss_pred             HHhccccCcH--HHHHHH
Confidence            9999998654  344554

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=88.48  E-value=34  Score=35.57  Aligned_cols=95  Identities=14%  Similarity=0.188  Sum_probs=57.2

Q ss_pred             hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhc--c---cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhH
Q 008827          392 SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLR--I---ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLL  466 (552)
Q Consensus       392 ~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~--~---~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~  466 (552)
                      +....+-.+++||+.+...  .       ..+..+..+|.  +   .++..+...|...++.+..+....+..-+..   
T Consensus       230 ~l~~~~w~~m~nL~~S~~g--~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~---  297 (464)
T PF11864_consen  230 SLCKPSWRTMRNLLKSHLG--H-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF---  297 (464)
T ss_pred             ccchhHHHHHHHHHcCccH--H-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc---
Confidence            5666777888888865421  1       14566667772  2   1345677789999998887663222222210   


Q ss_pred             hhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          467 RAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       467 ~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                       ...-+++.+...++.+++.+-.+....+.++.
T Consensus       298 -~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  298 -SPSSVLPSLLNALKSNSPRVDYEILLLINRLL  329 (464)
T ss_pred             -cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence             00126677788888777666666666665555

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=88.16  E-value=3.4  Score=36.77  Aligned_cols=109  Identities=17%  Similarity=0.140  Sum_probs=67.9

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC---C---C----CchhchHHHHHHHhhc
Q 008827          123 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD---D---P----GRVGDEASFAFSSLIA  192 (552)
Q Consensus       123 l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~---~---~----~~v~~~a~~~L~~l~~  192 (552)
                      ...++..+++.....  .....|.-..+..+....+.|+..|++..|+++|.   .   .    .....++..++..+..
T Consensus        68 p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n  145 (187)
T PF06371_consen   68 PEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN  145 (187)
T ss_dssp             HHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence            334555555544433  12222222233333345677888999999999985   1   1    1456778888888886


Q ss_pred             CCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhh
Q 008827          193 EKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMC  235 (552)
Q Consensus       193 ~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~  235 (552)
                      ........+-..+.+..|+..|.++  ++.++..++..|+.+|
T Consensus       146 ~~~G~~~v~~~~~~v~~i~~~L~s~--~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  146 TKYGLEAVLSHPDSVNLIALSLDSP--NIKTRKLALEILAALC  186 (187)
T ss_dssp             SHHHHHHHHCSSSHHHHHHHT--TT--SHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCcHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Confidence            6666555455678899999988765  4889999999998887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=87.57  E-value=12  Score=38.41  Aligned_cols=217  Identities=18%  Similarity=0.142  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHhcCChhhhhhhccccCCccHH-HHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHH
Q 008827           91 IQRDASLESIATIFKNNPEVVSQFVGPDTGRTLS-CIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNL  169 (552)
Q Consensus        91 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~-~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~L  169 (552)
                      +.|..+..+||.++..-+...       -..... .+...+++....-|..|+..+...+........... -....+.|
T Consensus       102 r~Ri~aA~ALG~l~~~~~~~~-------~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~-~~~l~~~L  173 (441)
T PF12054_consen  102 RARIAAAKALGLLLSYWPESS-------LQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPP-PQALSPRL  173 (441)
T ss_pred             HHHHHHHHHHHHHHHhcccch-------HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCcc-HHHHHHHH
Confidence            568889999999876532211       023344 477889999999999999999999886543222111 24577778


Q ss_pred             HHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHHHhCcH-----HHHHHhhhcCC---CChhhHHHHHHHHH----Hhhc
Q 008827          170 LELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGV-----DKLYNHLQKGS---LHPRRFEGILLALA----DMCS  236 (552)
Q Consensus       170 v~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i-----~~L~~~L~~~~---~~~~~~~~a~~aL~----~l~~  236 (552)
                      ...|.++ +..-.+....+..+-.+....-..+.+.|.+     |.|-.......   ++.--.+.|-....    .+..
T Consensus       174 ~~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~  253 (441)
T PF12054_consen  174 LEILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKK  253 (441)
T ss_pred             HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHH
Confidence            8888733 2233444555555554444444445555552     22111111110   00001111111111    1111


Q ss_pred             ---CChhH--HHHHHhc-ccHHHHHHhc----CCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCC
Q 008827          237 ---KLECC--RSRCLSL-QVLKLVVDAL----AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTS  305 (552)
Q Consensus       237 ---~~~~~--~~~~~~~-~~l~~lv~~L----~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~  305 (552)
                         .....  .+.+-+. .-+..-++..    ..-+..|+.+.+.++..+..-.+.       -..+|.+|+.-++ .++
T Consensus       254 ~l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~K-------LnPiIrpLMdSIK~Een  326 (441)
T PF12054_consen  254 SLSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKK-------LNPIIRPLMDSIKREEN  326 (441)
T ss_pred             hcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-------ccHHHHHHHHHhhcccc
Confidence               00000  0111110 1111111211    223556777777777776443222       2467888888887 568


Q ss_pred             HHHHHHHHHHHHHhhcC
Q 008827          306 TAVQVAALGAISNIVVD  322 (552)
Q Consensus       306 ~~v~~~a~~aL~nl~~~  322 (552)
                      ..+|..++.+|..|...
T Consensus       327 ~~LQ~rsA~slA~Li~~  343 (441)
T PF12054_consen  327 ELLQQRSAESLARLIQL  343 (441)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999887653

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=87.56  E-value=8.1  Score=33.66  Aligned_cols=115  Identities=17%  Similarity=0.135  Sum_probs=76.5

Q ss_pred             cHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcC---CCh
Q 008827          378 TASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT---GKE  454 (552)
Q Consensus       378 ~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~---~~~  454 (552)
                      ....+..++++.+++-+..++.++.-.+..++  -+.+.+.++.-+..+.+.|+....+.+.+.++.++..+..   +.+
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            46678889999999999999988888876642  2233355444677888888885566788888887777654   555


Q ss_pred             hhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          455 SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       455 ~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      .....+....    -..+++.+++++++  ......+..++..+..
T Consensus       104 ~l~Rei~tp~----l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  104 TLTREIATPN----LPKFIQSLLQLLQD--SSCPETALDALATLLP  143 (165)
T ss_pred             chHHHHhhcc----HHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence            4333343321    24666777777775  4555666666666654

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=87.56  E-value=51  Score=36.55  Aligned_cols=182  Identities=14%  Similarity=0.162  Sum_probs=107.5

Q ss_pred             HHHHhCcHHHHHHhhhcCCC---ChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC----CCC----HHHHHH
Q 008827          200 LAFEVNGVDKLYNHLQKGSL---HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA----HDS----SDVRSA  268 (552)
Q Consensus       200 ~~~~~~~i~~L~~~L~~~~~---~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~----~~~----~~v~~~  268 (552)
                      .+.++||+..+++.+.....   ........+..|...| +-+.+|+.+++.|+++.+++.+.    .+.    ..+-+.
T Consensus       112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~  190 (802)
T PF13764_consen  112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ  190 (802)
T ss_pred             HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence            35578999999998876431   1234445556666655 45789999999999999988774    333    455555


Q ss_pred             HHHHHHHhhccccc--ccc-----hhhh----ccCcHHHHHHhhcC----CCHHHHHHHHHHHHHhhcCCchhHHHHHhh
Q 008827          269 ACMCLRSVSRSIKN--LSA-----GSFM----NETIVIPLVRLLDD----TSTAVQVAALGAISNIVVDFTTRRSTFIRL  333 (552)
Q Consensus       269 a~~~L~~ls~~~~~--~~~-----~~~~----~~~~i~~Lv~lL~~----~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~  333 (552)
                      ....+..+......  ...     ....    +...+..+++.+.+    .++.+....+..|.+|+.+.....+.+++.
T Consensus       191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~  270 (802)
T PF13764_consen  191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH  270 (802)
T ss_pred             HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence            55555555322110  100     0000    22336666666654    368999999999999999877655544421


Q ss_pred             CcHHHHHHhhc-----CCCHHHHHHHHHHHHHhcccC-----ChHhHHHHHHhhcHHHHHhhhc
Q 008827          334 GGVKLLVQLSK-----SMDSTIRLNALRALRNLIFLA-----EDKCKEEIFMELTASLLASLIC  387 (552)
Q Consensus       334 g~i~~L~~ll~-----~~~~~v~~~a~~aL~~l~~~~-----~~~~~~~i~~~~~~~~l~~ll~  387 (552)
                        ..+.+++-.     .++..+.   +..++.++.+-     ....|+.+++.|++...++.|.
T Consensus       271 --F~p~l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~  329 (802)
T PF13764_consen  271 --FKPYLDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLL  329 (802)
T ss_pred             --HHHhcChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHH
Confidence              122222111     1122222   34444444322     1356889999998888777774

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.17  E-value=10  Score=36.02  Aligned_cols=108  Identities=13%  Similarity=0.186  Sum_probs=75.3

Q ss_pred             cHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhH
Q 008827          378 TASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHK  457 (552)
Q Consensus       378 ~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~  457 (552)
                      .+...+..|.+.|+...-..+..++.++.-+++....-+++   ++-.+++-+.+ +...|-..|+.+++.+...-..+.
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~---vii~vvkslKN-lRS~VsraA~~t~~difs~ln~~i  164 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE---VIIAVVKSLKN-LRSAVSRAACMTLADIFSSLNNSI  164 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566777888999999999999999988777666555555   45566677777 777899999999998886433333


Q ss_pred             HHHHHHhhHhhhhhhHHHHHHhhcC---CChhHHHHHHHHHHhhcC
Q 008827          458 EAVMDQLLLRAENKAQSCIIKFLQS---NDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       458 ~~i~~~~~~~~~~~~v~~Lv~lL~~---~~~~~~~~a~~~l~~l~~  500 (552)
                      +..++           ..+..+|..   ++.-+|..|-.+|..+..
T Consensus       165 ~~~ld-----------~lv~~Ll~ka~~dnrFvreda~kAL~aMV~  199 (334)
T KOG2933|consen  165 DQELD-----------DLVTQLLHKASQDNRFVREDAEKALVAMVN  199 (334)
T ss_pred             HHHHH-----------HHHHHHHhhhcccchHHHHHHHHHHHHHHh
Confidence            33221           233444443   345588888888888884

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.91  E-value=14  Score=39.07  Aligned_cols=146  Identities=17%  Similarity=0.091  Sum_probs=91.0

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHHhhhCCCc----chhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHH
Q 008827          124 SCIIEIVKDRFARTRLLASLCLIVIRNASPCY----LQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQ  198 (552)
Q Consensus       124 ~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~----~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~  198 (552)
                      +-+.+.++-.+..||.+|+..+.++.-..+..    ..|..+ ..-...|.++|.+ .+.||..|..-+.+..+.   + 
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~-~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---f-  251 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSII-QKQFEELYSLLEDPYPMVRSTAILGVCKITSK---F-  251 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH---H-
Confidence            34567888899999999999999986533211    122222 4467788899984 588998887666655431   1 


Q ss_pred             HHHHHhCcHHHHHHhhhcC---CCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008827          199 KLAFEVNGVDKLYNHLQKG---SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRS  275 (552)
Q Consensus       199 ~~~~~~~~i~~L~~~L~~~---~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~  275 (552)
                      ..++-...+..++..+.+.   +...++|-.....|-.+.. ++.... +. ..++|.+=..|.+.+..||-++...|..
T Consensus       252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh~-~l-e~~Lpal~~~l~D~se~VRvA~vd~ll~  328 (1005)
T KOG1949|consen  252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSHP-LL-EQLLPALRYSLHDNSEKVRVAFVDMLLK  328 (1005)
T ss_pred             HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-Cccchh-HH-HHHHHhcchhhhccchhHHHHHHHHHHH
Confidence            2222333344444433222   0124677777777777764 333211 11 1356667777778899999999998877


Q ss_pred             hh
Q 008827          276 VS  277 (552)
Q Consensus       276 ls  277 (552)
                      +-
T Consensus       329 ik  330 (1005)
T KOG1949|consen  329 IK  330 (1005)
T ss_pred             HH
Confidence            73

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=86.89  E-value=26  Score=32.52  Aligned_cols=203  Identities=12%  Similarity=0.108  Sum_probs=114.3

Q ss_pred             HHHHHH-hcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 008827          251 LKLVVD-ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST  329 (552)
Q Consensus       251 l~~lv~-~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~  329 (552)
                      +|.+.. .-+..+++++.....+|..++.+.. ..     ..-++..+..+.+.++.+.+.-+...+..+-...+...  
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~-----~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-VC-----VPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cc-----hhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH--
Confidence            344444 4457789999999999999988731 21     23455667777777777776777777777665433211  


Q ss_pred             HHhhCcHHHHHHh-----h---cCC--CHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhh-cCCChhHHHHHH
Q 008827          330 FIRLGGVKLLVQL-----S---KSM--DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI-CDPEPSVQEQAL  398 (552)
Q Consensus       330 ~~~~g~i~~L~~l-----l---~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll-~~~~~~v~~~a~  398 (552)
                          +.+..++..     .   .+.  ..+........+..+|... |++-     ...++.+..++ .+.++.++..++
T Consensus        74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~-p~~g-----~~ll~~ls~~L~~~~~~~~~alal  143 (234)
T PF12530_consen   74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSR-PDHG-----VDLLPLLSGCLNQSCDEVAQALAL  143 (234)
T ss_pred             ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhC-hhhH-----HHHHHHHHHHHhccccHHHHHHHH
Confidence                233333333     1   111  2223333344666666633 3322     22456677778 788888999999


Q ss_pred             HHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhH-HHHHHHhhHhhhhhhHHHHH
Q 008827          399 ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHK-EAVMDQLLLRAENKAQSCII  477 (552)
Q Consensus       399 ~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~-~~i~~~~~~~~~~~~v~~Lv  477 (552)
                      .++..++...-   -.+..    ....+.+.|.....+.+...-+..+..+..+.-+.. .....       ..++..+-
T Consensus       144 e~l~~Lc~~~v---vd~~s----~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~-------~~~l~~lW  209 (234)
T PF12530_consen  144 EALAPLCEAEV---VDFYS----AWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELK-------RQILQLLW  209 (234)
T ss_pred             HHHHHHHHHhh---ccHHH----HHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHH-------HHHHHHHH
Confidence            99999995421   11111    345555666554556666654544444443322211 11111       45566666


Q ss_pred             HhhcCCCh
Q 008827          478 KFLQSNDS  485 (552)
Q Consensus       478 ~lL~~~~~  485 (552)
                      ++..+.+.
T Consensus       210 ~~~~~~~~  217 (234)
T PF12530_consen  210 EYTSSSDV  217 (234)
T ss_pred             hhcccccc
Confidence            66666553

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=86.77  E-value=29  Score=32.86  Aligned_cols=210  Identities=14%  Similarity=0.111  Sum_probs=120.1

Q ss_pred             HHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC---CCCchhchHHHHHHHhhcCCHHHHHHHHHh
Q 008827          128 EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD---DPGRVGDEASFAFSSLIAEKEDMQKLAFEV  204 (552)
Q Consensus       128 ~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  204 (552)
                      .-+.++++.+|..|..+|......-+..    .....-+..|++++.   ++...-..+..++..|.....      +..
T Consensus         6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~----~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~------~~~   75 (262)
T PF14500_consen    6 EYLTSEDPIIRAKALELLSEVLERLPPD----FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN------FSP   75 (262)
T ss_pred             hhhCCCCHHHHHHHHHHHHHHHHhCCHh----hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC------CCh
Confidence            4568899999999999999877654321    223334566666654   222222233444444442211      011


Q ss_pred             CcHHHHHHhhhcC----CCChhhHHHHHHHHHHhhcCChhHHHHHHhc--ccHHHHHHhcC-CCCHHHHHHHHHHHHHhh
Q 008827          205 NGVDKLYNHLQKG----SLHPRRFEGILLALADMCSKLECCRSRCLSL--QVLKLVVDALA-HDSSDVRSAACMCLRSVS  277 (552)
Q Consensus       205 ~~i~~L~~~L~~~----~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~--~~l~~lv~~L~-~~~~~v~~~a~~~L~~ls  277 (552)
                      +....+++.+.+.    ......|..+...+..+..+   .+..+...  +.+..+++.+. ..+|+-...+...+..+.
T Consensus        76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~---~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~  152 (262)
T PF14500_consen   76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN---HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL  152 (262)
T ss_pred             hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH---hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            1123333322221    12234677788888887643   33333333  47777888887 458888888888888776


Q ss_pred             cccccccchhhhccCcHHHHHHhhcC-------C---CH--HHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC
Q 008827          278 RSIKNLSAGSFMNETIVIPLVRLLDD-------T---ST--AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS  345 (552)
Q Consensus       278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~-------~---~~--~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~  345 (552)
                      ...+        -....+.+...+..       +   ||  -.++.-..+|.+.....+.     ...-++|.|++-|.+
T Consensus       153 ~~~~--------~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-----fa~~~~p~LleKL~s  219 (262)
T PF14500_consen  153 QEFD--------ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-----FAPFAFPLLLEKLDS  219 (262)
T ss_pred             Hhcc--------cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-----hHHHHHHHHHHHHcC
Confidence            6532        13445666666531       1   22  2233333344433322222     223578999999999


Q ss_pred             CCHHHHHHHHHHHHHhcc
Q 008827          346 MDSTIRLNALRALRNLIF  363 (552)
Q Consensus       346 ~~~~v~~~a~~aL~~l~~  363 (552)
                      +.+.++..++.+|...+.
T Consensus       220 ~~~~~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  220 TSPSVKLDSLQTLKACIE  237 (262)
T ss_pred             CCcHHHHHHHHHHHHHHH
Confidence            999999999999987754

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=86.62  E-value=5  Score=34.02  Aligned_cols=95  Identities=18%  Similarity=0.203  Sum_probs=72.4

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHH
Q 008827          303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL  382 (552)
Q Consensus       303 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l  382 (552)
                      .+|+..-...|..+..   +....      ..++..|.+-+.+.++.++..|+..|-.+..+.+...+.++.....++.+
T Consensus        15 ~~dw~~il~icD~I~~---~~~~~------k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL   85 (144)
T cd03568          15 SENWGLILDVCDKVKS---DENGA------KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQEL   85 (144)
T ss_pred             CcCHHHHHHHHHHHhc---CCccH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHH
Confidence            4566665555555532   11111      24677788888899999999999999999888877788888888899999


Q ss_pred             HhhhcC-CChhHHHHHHHHHHHhhc
Q 008827          383 ASLICD-PEPSVQEQALALVRNLVD  406 (552)
Q Consensus       383 ~~ll~~-~~~~v~~~a~~~L~~l~~  406 (552)
                      .+++.. .++.|+..++.++.....
T Consensus        86 ~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          86 KKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHhcccCCHHHHHHHHHHHHHHHH
Confidence            999987 788899999988877753

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=86.61  E-value=2.1  Score=31.33  Aligned_cols=67  Identities=13%  Similarity=0.153  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHcCCCCCCcccc-cccchHHHHHhhc-CCCCcchHHHHHHHHhhcCChhhHHHHHhcCch
Q 008827           11 VDAGARSLKMIYQSKMAPKYDFL-QEENMEFLLSLLN-NESENVSGLGASIISHSCKTSLEQKLLFDAGVL   79 (552)
Q Consensus        11 ~~~~l~~l~~l~~~~~~~~~~~~-~~~~i~~l~~ll~-~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i   79 (552)
                      +++|+.|+-++..++...  .++ +.+.++.++++.. ++..++|--+.-+|.-++++.+..+.+.+.||.
T Consensus         4 lKaaLWaighIgss~~G~--~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW~   72 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGI--QLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGWE   72 (73)
T ss_pred             HHHHHHHHHhHhcChHHH--HHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCCC
Confidence            688999999998776554  444 4689999999997 567889988888999999888888888888874

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=86.36  E-value=52  Score=35.45  Aligned_cols=281  Identities=18%  Similarity=0.122  Sum_probs=146.2

Q ss_pred             cccHHHHHHhcCC--------CCHHHHHHHHHHHHHhhc--ccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 008827          248 LQVLKLVVDALAH--------DSSDVRSAACMCLRSVSR--SIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAIS  317 (552)
Q Consensus       248 ~~~l~~lv~~L~~--------~~~~v~~~a~~~L~~ls~--~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~  317 (552)
                      .|.++.++..|..        +++.-.+.|...+.++..  .....-.. +.+.=+++.++-.++++.--++..||..+.
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an-~me~fiv~hv~P~f~s~ygfL~Srace~is  485 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAAN-VMEYFIVNHVIPAFRSNYGFLKSRACEFIS  485 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHH-HHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence            4788899888841        233444555555555543  11111112 333444555666667777788999999999


Q ss_pred             HhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHH--hhcHHHHHhhhcCCChhHHH
Q 008827          318 NIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM--ELTASLLASLICDPEPSVQE  395 (552)
Q Consensus       318 nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~--~~~~~~l~~ll~~~~~~v~~  395 (552)
                      .+..+.++   .-+-..+.+.....+++.+-.++..|.-|+..+..+..  ...++.+  .+.++-|+.+-+.-+-++..
T Consensus       486 ~~eeDfkd---~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k~sahVp~tmekLLsLSn~feiD~LS  560 (970)
T COG5656         486 TIEEDFKD---NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEKFSAHVPETMEKLLSLSNTFEIDPLS  560 (970)
T ss_pred             HHHHhccc---chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHHHHhhhhHHHHHHHHhcccccchHHH
Confidence            88655543   22223456666677777788899999999998876432  2222222  23344455555555545444


Q ss_pred             HHHHHHH-HhhcCCcchHHHHHhhcCchHH----HHHHHhcccC-----chhHHHHHHHHHHhhcC---CChhhHHHHHH
Q 008827          396 QALALVR-NLVDGRINSVEYIFAEDGIILD----AVGRQLRIAS-----KAEIEIQGMYVLGNVAT---GKESHKEAVMD  462 (552)
Q Consensus       396 ~a~~~L~-~l~~~~~~~~~~i~~~~~~~~~----~l~~~L~~~~-----~~~v~~~a~~~L~~la~---~~~~~~~~i~~  462 (552)
                      .++..+. ..+.--......+.+.   +.+    +-..++.+++     .++-+.+|.+.|..+.+   .-+ ++-.++.
T Consensus       561 ~vMe~fVe~fseELspfa~eLa~~---Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSle-n~p~vLk  636 (970)
T COG5656         561 MVMESFVEYFSEELSPFAPELAGS---LVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLE-NRPLVLK  636 (970)
T ss_pred             HHHHHHHHHhHHhhchhHHHHHHH---HHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcc-cchHHHH
Confidence            4443332 2222111111111111   223    2223333321     12344556666655442   111 1222221


Q ss_pred             HhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCC-ccHHHHHHHHH
Q 008827          463 QLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPC-LDVKLRVKTAL  541 (552)
Q Consensus       463 ~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~-~~v~~~a~~al  541 (552)
                      .+    .....|.+--.|.+.-.+.-.+|+-.+-+.+.    -..+-  .-..=|+.+.+.+++.++. .+--+.+..|+
T Consensus       637 ~l----e~slypvi~Filkn~i~dfy~Ea~dildg~tf----~skeI--~pimwgi~Ell~~~l~~~~t~~y~ee~~~al  706 (970)
T COG5656         637 YL----EVSLYPVISFILKNEISDFYQEALDILDGYTF----MSKEI--EPIMWGIFELLLNLLIDEITAVYSEEVADAL  706 (970)
T ss_pred             HH----HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhH----HHHHh--hhhhhHHHHHHHhcccccchhhhHHHHHHHH
Confidence            10    02333444445566667777888888877764    11111  1123356667777766544 35566778899


Q ss_pred             HHHhhhc
Q 008827          542 EQFNSFD  548 (552)
Q Consensus       542 ~~~~~~~  548 (552)
                      .+|...|
T Consensus       707 ~nfityG  713 (970)
T COG5656         707 DNFITYG  713 (970)
T ss_pred             HHHHHhC
Confidence            9888765

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=86.25  E-value=12  Score=31.54  Aligned_cols=94  Identities=9%  Similarity=0.107  Sum_probs=62.2

Q ss_pred             cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChh-hHHHHHHHhh
Q 008827          387 CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES-HKEAVMDQLL  465 (552)
Q Consensus       387 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~-~~~~i~~~~~  465 (552)
                      .++|+......+..+..=    +.....       ++..+.+-|++ +++.++..|+..|-.+...+-. ....|..   
T Consensus        15 ~~~dw~~ileicD~In~~----~~~~k~-------a~rai~krl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~evas---   79 (139)
T cd03567          15 REEDWEAIQAFCEQINKE----PEGPQL-------AVRLLAHKIQS-PQEKEALQALTVLEACMKNCGERFHSEVGK---   79 (139)
T ss_pred             CCCCHHHHHHHHHHHHcC----CccHHH-------HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHHHh---
Confidence            355666666666665431    111111       56667777777 8999999999999988874432 2333443   


Q ss_pred             HhhhhhhHHHHHHhhcC------CChhHHHHHHHHHHhhc
Q 008827          466 LRAENKAQSCIIKFLQS------NDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       466 ~~~~~~~v~~Lv~lL~~------~~~~~~~~a~~~l~~l~  499 (552)
                          .+++.-+++++..      .+..|+......+...+
T Consensus        80 ----~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (139)
T cd03567          80 ----FRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT  115 (139)
T ss_pred             ----HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence                6888889998853      46789988888876654

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=86.07  E-value=59  Score=35.80  Aligned_cols=151  Identities=16%  Similarity=0.168  Sum_probs=83.2

Q ss_pred             HHHHhhCcHHHHHHhhcCC--------CHHHHHHHHHHHHHhcccCChHhHHHHHHhh--------cHHHHHhhhc----
Q 008827          328 STFIRLGGVKLLVQLSKSM--------DSTIRLNALRALRNLIFLAEDKCKEEIFMEL--------TASLLASLIC----  387 (552)
Q Consensus       328 ~~~~~~g~i~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~--------~~~~l~~ll~----  387 (552)
                      +-+...+++..++++..-+        ..+....|+.+|+-++.  -|+.+..+.+..        ++..|++.-.    
T Consensus       595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~--iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~  672 (1516)
T KOG1832|consen  595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS--IPDIQKALAHATLSNNRAYDGIAIILDAANGSNS  672 (1516)
T ss_pred             HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe--cchHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence            3466678888888876542        34566667777765543  356666666542        3333333222    


Q ss_pred             CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHH---HHHHHhhcCCChhhHHHHHHHh
Q 008827          388 DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG---MYVLGNVATGKESHKEAVMDQL  464 (552)
Q Consensus       388 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a---~~~L~~la~~~~~~~~~i~~~~  464 (552)
                      -.|++++..|+.++.|+.+..|+.....+..          ...+++++.+...+   ...|.+.-.    .....+.  
T Consensus       673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~----------v~S~~g~~r~~l~~~~ks~~le~~l~----~mw~~Vr--  736 (1516)
T KOG1832|consen  673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVA----------VGSQSGDRRIFLGAGTKSAKLEQVLR----QMWEAVR--  736 (1516)
T ss_pred             ccCHHHHHHHHhhhheeecCCCCcchhhhhh----------ccccCCCccccccCCCchHHHHHHHH----HHHHHHh--
Confidence            2389999999999999988866533222211          11111111110000   001111000    1111121  


Q ss_pred             hHhhhhhhHHHHHHhhcCCCh-----hHHHHHHHHHHhhcC
Q 008827          465 LLRAENKAQSCIIKFLQSNDS-----RLRTAAVWAVLNLTC  500 (552)
Q Consensus       465 ~~~~~~~~v~~Lv~lL~~~~~-----~~~~~a~~~l~~l~~  500 (552)
                          ..+++..|+++|+-.++     .+|.-|+.+|.-|+.
T Consensus       737 ----~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR  773 (1516)
T KOG1832|consen  737 ----GNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLAR  773 (1516)
T ss_pred             ----cCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccc
Confidence                25667899999986432     489999999999996

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=85.84  E-value=38  Score=33.37  Aligned_cols=155  Identities=17%  Similarity=0.132  Sum_probs=106.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCchhHHHHHhh-C-cHHHHHHhhcCC-----C--------HHHHHHHHHH
Q 008827          294 VIPLVRLLDDTSTAVQVAALGAISNIVV-DFTTRRSTFIRL-G-GVKLLVQLSKSM-----D--------STIRLNALRA  357 (552)
Q Consensus       294 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~-~~~~~~~~~~~~-g-~i~~L~~ll~~~-----~--------~~v~~~a~~a  357 (552)
                      ++.+.+.|....+.+...+...|..++. +.+.....+... + -.+.+.+++...     +        +.+|.+.+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7788888888888888899999999987 554554455432 1 223334443211     1        2899999998


Q ss_pred             HHHhcccCChHhHHHHHHhh-cHHHHHhhhcCCChhHHHHHHHHHHHhhcCCc----chHHHHHhhcCchHHHHHHHhcc
Q 008827          358 LRNLIFLAEDKCKEEIFMEL-TASLLASLICDPEPSVQEQALALVRNLVDGRI----NSVEYIFAEDGIILDAVGRQLRI  432 (552)
Q Consensus       358 L~~l~~~~~~~~~~~i~~~~-~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~----~~~~~i~~~~~~~~~~l~~~L~~  432 (552)
                      +..+....++..+..+++.. .+..+++-|..+++++....+..+..-...++    .....+|++.  ++..+..+...
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~--~L~~l~~Ly~~  215 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEW--TLSQLASLYSR  215 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHH--HHHHHHHHhcc
Confidence            88887777888888888654 57888888989999999999999886443322    1223455555  67788776655


Q ss_pred             cCch----hHHHHHHHHHHhhcC
Q 008827          433 ASKA----EIEIQGMYVLGNVAT  451 (552)
Q Consensus       433 ~~~~----~v~~~a~~~L~~la~  451 (552)
                       .++    .+...+-..|..+++
T Consensus       216 -~~~~~~~~~~~~vh~fL~~lcT  237 (330)
T PF11707_consen  216 -DGEDEKSSVADLVHEFLLALCT  237 (330)
T ss_pred             -cCCcccchHHHHHHHHHHHHhc
Confidence             444    667777777777665

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B

Probab=85.36  E-value=91  Score=37.32  Aligned_cols=264  Identities=15%  Similarity=0.150  Sum_probs=130.1

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchHHHHHHHhhcCCHH---HHH
Q 008827          123 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKED---MQK  199 (552)
Q Consensus       123 l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~---~~~  199 (552)
                      ...++.++.--+..+|......|-.+....        -...+...|..++.+++++......+|++|--+...   .+.
T Consensus       194 ~~kl~~~l~~ap~~lq~eiI~~LPeIl~ds--------~h~~v~~~L~~ll~~~~~L~~~iLd~Ls~L~Ls~~~l~~vr~  265 (1426)
T PF14631_consen  194 TDKLFEVLSIAPVELQKEIISSLPEILDDS--------QHDEVVEELLELLQENPELTVPILDALSNLNLSPELLEEVRE  265 (1426)
T ss_dssp             HHHHHHHHHHS-TTTHHHHHHTHHHHS-GG--------GHHHHHHHHHHHHHH-STTHHHHHHHHHHS---HHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcch--------hHHHHHHHHHHHHhcCCchhhhHHHHHhcCCCCHHHHHHHHH
Confidence            344445555444555555555555544321        124577888888887777777778888888644332   223


Q ss_pred             HHHH------hCcHHHHHHhhhcCCCChhhHHHHHHHHHH-hh-----------cCChhHHHHH----------HhcccH
Q 008827          200 LAFE------VNGVDKLYNHLQKGSLHPRRFEGILLALAD-MC-----------SKLECCRSRC----------LSLQVL  251 (552)
Q Consensus       200 ~~~~------~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~-l~-----------~~~~~~~~~~----------~~~~~l  251 (552)
                      .+.+      .+.+|.++++|-......+..+ .+.-|.. |-           ......+...          ...+..
T Consensus       266 ~vl~~L~s~~~e~LP~lirFLL~s~t~~da~e-vI~~LR~~L~~~~~v~~~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~  344 (1426)
T PF14631_consen  266 KVLEKLSSVDLEDLPVLIRFLLQSITPSDAVE-VISELRENLDFEQCVLPSRIQASQRKLKNKGNASSSGNQENSSQDCE  344 (1426)
T ss_dssp             HHHHSTTSS-TTHHHHHHHHHHHS-SSTTHHH-HHHHHHHHHH-------------------------------HHHHHH
T ss_pred             HHHHHHhcCChhhhHHHHHHHHHhCCcccHHH-HHHHHHHHccccccccchhhcccccccccCcccccccccccccccHH
Confidence            3332      2448999997765321111111 1111111 10           0000000000          001123


Q ss_pred             HHHHHhcCCC---CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhH
Q 008827          252 KLVVDALAHD---SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRR  327 (552)
Q Consensus       252 ~~lv~~L~~~---~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~  327 (552)
                      ..+++.++.+   ...+..++.+.|.++...         .++.++..++-++= +.+..-+..+-..+.+-.... ...
T Consensus       345 ~lil~~lks~lr~~k~l~eawiK~I~~~~~~---------~~hkv~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~g-~it  414 (1426)
T PF14631_consen  345 KLILDVLKSGLRFSKDLSEAWIKAIESLEDA---------SDHKVIDLWLLLILYSINEDNRKSIEKILKKKIKSG-HIT  414 (1426)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHHGGGS---------TT--THHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT--S-
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHhcCCCc---------cccchHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-ccc
Confidence            4455555543   556777777777766432         23455666555542 333344555666666544321 111


Q ss_pred             HHHH----------hhCcHHHHH----HhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhH
Q 008827          328 STFI----------RLGGVKLLV----QLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSV  393 (552)
Q Consensus       328 ~~~~----------~~g~i~~L~----~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v  393 (552)
                      ..++          =....+.++    .++.+.++.++..+......+....+.-+++++     +..|+..+.+.+..-
T Consensus       415 ~~ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeV-----v~~Lvthi~sg~~~e  489 (1426)
T PF14631_consen  415 EQLLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEV-----VGALVTHIGSGNSQE  489 (1426)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHH-----HHHHHHHHHH--HHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHH-----HHHHHHHHcCCcHHH
Confidence            1111          123444444    356778999999988877777554443345554     445666665555555


Q ss_pred             HHHHHHHHHHhhcCCcc
Q 008827          394 QEQALALVRNLVDGRIN  410 (552)
Q Consensus       394 ~~~a~~~L~~l~~~~~~  410 (552)
                      ...|+.+|..++..+++
T Consensus       490 v~~aL~vL~~L~~~~~~  506 (1426)
T PF14631_consen  490 VDAALDVLCELAEKNPS  506 (1426)
T ss_dssp             HHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHhccHH
Confidence            57889999999876544

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=85.31  E-value=83  Score=36.81  Aligned_cols=147  Identities=12%  Similarity=0.041  Sum_probs=90.8

Q ss_pred             hCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchH
Q 008827          333 LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV  412 (552)
Q Consensus       333 ~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  412 (552)
                      .|++|.|..-|.+.+..+|..|+..++.+....  .....--....+...+.-+.+-+.+++..++....++..++|+..
T Consensus       258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~--~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~  335 (1266)
T KOG1525|consen  258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDK--DSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA  335 (1266)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc--hhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence            489999999999999999999999999986532  111110011245556666778888999999988888887776543


Q ss_pred             HHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHH
Q 008827          413 EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAV  492 (552)
Q Consensus       413 ~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~  492 (552)
                      .....     ...+..  .+ .++.++.....++..+...   .....+.       ...+..+-..+++....||+.|.
T Consensus       336 ~~~~~-----~~~l~~--~~-~D~~~rir~~v~i~~~~v~---~~~l~~~-------~~ll~~~~eR~rDKk~~VR~~Am  397 (1266)
T KOG1525|consen  336 KASTI-----LLALRE--RD-LDEDVRVRTQVVIVACDVM---KFKLVYI-------PLLLKLVAERLRDKKIKVRKQAM  397 (1266)
T ss_pred             hHHHH-----HHHHHh--hc-CChhhhheeeEEEEEeehh---Hhhhhhh-------HHHHHHHHHHHhhhhHHHHHHHH
Confidence            33221     112211  11 4455554443333332221   1222222       12556667777888899999998


Q ss_pred             HHHHhhc
Q 008827          493 WAVLNLT  499 (552)
Q Consensus       493 ~~l~~l~  499 (552)
                      .-+..+-
T Consensus       398 ~~LaqlY  404 (1266)
T KOG1525|consen  398 NGLAQLY  404 (1266)
T ss_pred             HHHHHHH
Confidence            8886654

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=85.17  E-value=6.1  Score=33.22  Aligned_cols=94  Identities=16%  Similarity=0.099  Sum_probs=70.1

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHH
Q 008827          303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL  382 (552)
Q Consensus       303 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l  382 (552)
                      ++|+..-...|..+..   +....      ..++..+.+-+.+.++.++..|+..|-.+..+..+..+.++.....++.+
T Consensus        16 ~~dw~~ileicD~In~---~~~~~------k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el   86 (139)
T cd03567          16 EEDWEAIQAFCEQINK---EPEGP------QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL   86 (139)
T ss_pred             CCCHHHHHHHHHHHHc---CCccH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence            4566666666666631   11111      24677788889999999999999999988887777788888888888889


Q ss_pred             HhhhcC------CChhHHHHHHHHHHHhh
Q 008827          383 ASLICD------PEPSVQEQALALVRNLV  405 (552)
Q Consensus       383 ~~ll~~------~~~~v~~~a~~~L~~l~  405 (552)
                      ++++..      .++.|+..++.++..-.
T Consensus        87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (139)
T cd03567          87 IKLVSPKYLGSRTSEKVKTKIIELLYSWT  115 (139)
T ss_pred             HHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence            999853      56789998888876655

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=84.97  E-value=2.7  Score=38.33  Aligned_cols=89  Identities=21%  Similarity=0.244  Sum_probs=63.4

Q ss_pred             hhHHHHHHHHHHHhhcCCcchHHHHHhhcC-----chHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhh
Q 008827          391 PSVQEQALALVRNLVDGRINSVEYIFAEDG-----IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLL  465 (552)
Q Consensus       391 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~-----~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~  465 (552)
                      ..-|.-|+.+|..++..+. +.+.++..+.     .++..|+++|....++..++.++-.|.+++.+++.....+..   
T Consensus       138 lSPqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~---  213 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAM---  213 (257)
T ss_pred             CCHHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHH---
Confidence            3567888999999885532 2233322221     167788888887678889999999999999988865555543   


Q ss_pred             HhhhhhhHHHHHHhhcCCChh
Q 008827          466 LRAENKAQSCIIKFLQSNDSR  486 (552)
Q Consensus       466 ~~~~~~~v~~Lv~lL~~~~~~  486 (552)
                         ..+.+..|+.++.+.+..
T Consensus       214 ---q~~~i~~Li~FiE~a~~~  231 (257)
T PF12031_consen  214 ---QKPCISHLIAFIEDAEQN  231 (257)
T ss_pred             ---hhchHHHHHHHHHHHHHH
Confidence               267789999999876543

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=84.55  E-value=20  Score=36.03  Aligned_cols=102  Identities=16%  Similarity=0.185  Sum_probs=79.1

Q ss_pred             hhH-HhHHHHHHHhcCC----CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhh-cCC-CChhhHHHHHHHHH
Q 008827          160 GIK-TKLINNLLELLDD----PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQ-KGS-LHPRRFEGILLALA  232 (552)
Q Consensus       160 ~~~-~g~i~~Lv~ll~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~-~~~-~~~~~~~~a~~aL~  232 (552)
                      .++ ......|..++++    .+.+...|+..++.+..++|.....+.+.|.++.+++.+. ... +..++....-.+|+
T Consensus       101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~  180 (379)
T PF06025_consen  101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS  180 (379)
T ss_pred             ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence            445 5566777777763    2567889999999999999988888889999999999887 432 34566677778999


Q ss_pred             HhhcCChhHHHHHHhcccHHHHHHhcCCCC
Q 008827          233 DMCSKLECCRSRCLSLQVLKLVVDALAHDS  262 (552)
Q Consensus       233 ~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~  262 (552)
                      .+|-+ ..-.+.+.+.+.++.+.+.+.++.
T Consensus       181 AicLN-~~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  181 AICLN-NRGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             HHhcC-HHHHHHHHhcChHHHHHHHhCCHH
Confidence            99985 455677888899999999987654

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=84.49  E-value=19  Score=34.19  Aligned_cols=158  Identities=12%  Similarity=0.159  Sum_probs=90.2

Q ss_pred             hHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcC--chHHHHHhhcC-----CHHHHHHHHHHHHHHhcCChhh
Q 008827           38 MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAG--VLKRLTSLLGG-----SLIQRDASLESIATIFKNNPEV  110 (552)
Q Consensus        38 i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g--~i~~L~~lL~~-----~~~v~~~al~~L~~l~~~~~~~  110 (552)
                      ...+..++..=..+.+.-+.+++.-+...+.....+...+  ....+..++..     .+..+.-++++++|+...... 
T Consensus        65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~-  143 (268)
T PF08324_consen   65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG-  143 (268)
T ss_dssp             HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC-
T ss_pred             HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc-
Confidence            3444555544344556677777776665555444444433  24455555432     457788899999997654333 


Q ss_pred             hhhhccccCCc-cHHHHHHHHhcC----ChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhc-C--CCCchhch
Q 008827          111 VSQFVGPDTGR-TLSCIIEIVKDR----FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL-D--DPGRVGDE  182 (552)
Q Consensus       111 ~~~~~~~~~~~-~l~~l~~ll~~~----~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll-~--~~~~v~~~  182 (552)
                      ...+...  .. .+...+....+.    +..+|.+++..+.|++........+.-.....+..+++.+ .  .++++...
T Consensus       144 ~~~~~~~--~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R  221 (268)
T PF08324_consen  144 RQLLLSH--FDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR  221 (268)
T ss_dssp             HHHHHCT--HHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred             HHHHHhc--ccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            2333221  12 232333322333    7899999999999997643211112223344677777743 3  45678889


Q ss_pred             HHHHHHHhhcCCHHHH
Q 008827          183 ASFAFSSLIAEKEDMQ  198 (552)
Q Consensus       183 a~~~L~~l~~~~~~~~  198 (552)
                      ...+++++...++...
T Consensus       222 ~LvAlGtL~~~~~~~~  237 (268)
T PF08324_consen  222 LLVALGTLLSSSDSAK  237 (268)
T ss_dssp             HHHHHHHHHCCSHHHH
T ss_pred             HHHHHHHHhccChhHH
Confidence            9999999997766543

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=84.47  E-value=6.8  Score=33.11  Aligned_cols=72  Identities=18%  Similarity=0.179  Sum_probs=61.0

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc-CCChhHHHHHHHHHHHhh
Q 008827          334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-DPEPSVQEQALALVRNLV  405 (552)
Q Consensus       334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~-~~~~~v~~~a~~~L~~l~  405 (552)
                      .++..|.+-+.++++.++..|+..|-.+..+.+...+..+.....++.+.+++. ..++.|+..++.++..-.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~  113 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA  113 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence            567788888889999999999999998888767777888888888999999887 567789999998887765

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=83.63  E-value=33  Score=36.04  Aligned_cols=214  Identities=15%  Similarity=0.107  Sum_probs=112.2

Q ss_pred             hcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC--C----------CCchhchHHHHHHHhhcCCHHHH
Q 008827          131 KDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--D----------PGRVGDEASFAFSSLIAEKEDMQ  198 (552)
Q Consensus       131 ~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~--~----------~~~v~~~a~~~L~~l~~~~~~~~  198 (552)
                      .|.+..|...|-..|..+...-        -+...+..|..+..  .          ++.+|.+....|.+-..   .  
T Consensus       247 ad~~~~V~~~ae~~LKr~~~~~--------ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~---A--  313 (501)
T PF13001_consen  247 ADSNSSVSDRAEDLLKRLSVSL--------EDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI---A--  313 (501)
T ss_pred             eCCcchHHHHHHHHHhhcCCCC--------CCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH---H--
Confidence            4566667777777776655431        12345555655554  1          12344444444443210   0  


Q ss_pred             HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHH---HHhhcCC-hhHHH---HHHhcccHHHHHH----hcCCCCHHHHH
Q 008827          199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLAL---ADMCSKL-ECCRS---RCLSLQVLKLVVD----ALAHDSSDVRS  267 (552)
Q Consensus       199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL---~~l~~~~-~~~~~---~~~~~~~l~~lv~----~L~~~~~~v~~  267 (552)
                       ...-...+......|.+.....+++..++..+   .....+- +..-.   ..+..++.|.+-.    --...+...|.
T Consensus       314 -a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~  392 (501)
T PF13001_consen  314 -ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRS  392 (501)
T ss_pred             -HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHH
Confidence             00011222333333444423456666666666   4443322 22211   2233455555510    11235678999


Q ss_pred             HHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH--HHHhhCcHHHHH-Hhhc
Q 008827          268 AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS--TFIRLGGVKLLV-QLSK  344 (552)
Q Consensus       268 ~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~--~~~~~g~i~~L~-~ll~  344 (552)
                      .+-.+|+.|++..+.+-.   .+-+.+.-|++-|.++.++++.+.-.||..++..+.....  ..........+. ....
T Consensus       393 ~aYe~lG~L~~~~p~l~~---~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~  469 (501)
T PF13001_consen  393 LAYETLGLLAKRAPSLFS---KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQ  469 (501)
T ss_pred             HHHHHHHHHHccCccccc---ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhcc
Confidence            999999999987665421   3567788888888889999999999999988865543221  011111111122 2223


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 008827          345 SMDSTIRLNALRALRNL  361 (552)
Q Consensus       345 ~~~~~v~~~a~~aL~~l  361 (552)
                      +....+|..|+.-...+
T Consensus       470 ~~~~~~R~~avk~an~~  486 (501)
T PF13001_consen  470 SEVRSCRYAAVKYANAC  486 (501)
T ss_pred             chhHHHHHHHHHHHHHh
Confidence            34455677776555444

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=83.41  E-value=8.6  Score=32.08  Aligned_cols=73  Identities=18%  Similarity=0.156  Sum_probs=59.7

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC---CChhHHHHHHHHHHHhhc
Q 008827          334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD---PEPSVQEQALALVRNLVD  406 (552)
Q Consensus       334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~---~~~~v~~~a~~~L~~l~~  406 (552)
                      .++..|.+-++++++.++..|+..|-.+..+.++..+..+.....+..+++++..   .++.|+..++.++.+...
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            4677888889999999999999999999887776677777776677778888865   477899999988877653

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.31  E-value=86  Score=35.38  Aligned_cols=286  Identities=12%  Similarity=0.082  Sum_probs=146.7

Q ss_pred             chHHHHHhh-cCCCCcchHHHHHHHHhhcC-ChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhh
Q 008827           37 NMEFLLSLL-NNESENVSGLGASIISHSCK-TSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQ  113 (552)
Q Consensus        37 ~i~~l~~ll-~~~~~~~~~~a~~~l~~~~~-~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~  113 (552)
                      +++.|...+ ++.+.+.+..+...+.++-. .+++-..+-+..-+|.++--+.+ ...+|...++.|..-...    ...
T Consensus       467 AvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtv----vnc  542 (2799)
T KOG1788|consen  467 AVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTV----VNC  542 (2799)
T ss_pred             HHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhh----hcc
Confidence            445555543 56778888888888887633 34444445555667777766666 346666666655431110    000


Q ss_pred             hccccCCccHHHHHHHHhcCC-hhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC----CchhchHHHHHH
Q 008827          114 FVGPDTGRTLSCIIEIVKDRF-ARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP----GRVGDEASFAFS  188 (552)
Q Consensus       114 ~~~~~~~~~l~~l~~ll~~~~-~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~----~~v~~~a~~~L~  188 (552)
                      +    ...-+.++.-+++.+- ...+...+.....+...+. ..++.+++-|.++.|-..++..    ++-+....   .
T Consensus       543 v----PeqELlSLCvLLqqpIssalkhtIlsffvKLIsfDq-qyKkvlREVGvLevLqddlkqhkll~gpdqysgv---s  614 (2799)
T KOG1788|consen  543 V----PEQELLSLCVLLQQPISSALKHTILSFFVKLISFDQ-QYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGV---S  614 (2799)
T ss_pred             C----cHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhhHHH-HHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhH---H
Confidence            0    0122334455555432 2333344444444444332 2456677789999888777521    11111111   0


Q ss_pred             HhhcC---CHHHHHHHHHhCcH---HHHHHhhhcCC-CChh-----hHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHH
Q 008827          189 SLIAE---KEDMQKLAFEVNGV---DKLYNHLQKGS-LHPR-----RFEGILLALADMCSKLECCRSRCLSLQVLKLVVD  256 (552)
Q Consensus       189 ~l~~~---~~~~~~~~~~~~~i---~~L~~~L~~~~-~~~~-----~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~  256 (552)
                      .....   ++.+++..-....+   |++++   +++ ..|-     .....-.+|..+-++++++.+.+.+..+...+++
T Consensus       615 ehydrnpss~sf~~~ld~~daiisspklme---SgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilp  691 (2799)
T KOG1788|consen  615 EHYDRNPSSPSFKQHLDSQDAIISSPKLME---SGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILP  691 (2799)
T ss_pred             HHhhcCCCCchhhhccccccceeecchhhc---ccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEE
Confidence            11101   11111111001111   22222   110 0110     0112234666777788888899999888888877


Q ss_pred             hcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCC--------C----HHHHHHHHHHHHHhhcCCc
Q 008827          257 ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT--------S----TAVQVAALGAISNIVVDFT  324 (552)
Q Consensus       257 ~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~--------~----~~v~~~a~~aL~nl~~~~~  324 (552)
                      ++-+  .+-|......+..|-...+.     -+.+..+-.+|..|++.        .    -.......+++..+...+.
T Consensus       692 flin--dehRSslLrivscLitvdpk-----qvhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvng  764 (2799)
T KOG1788|consen  692 FLIN--DEHRSSLLRIVSCLITVDPK-----QVHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNG  764 (2799)
T ss_pred             eeec--hHHHHHHHHHHHHHhccCcc-----cccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCc
Confidence            7733  23333444444433222111     23456677888888763        1    2345566677777776666


Q ss_pred             hhHHHHHhhCcHHHHHHhhc
Q 008827          325 TRRSTFIRLGGVKLLVQLSK  344 (552)
Q Consensus       325 ~~~~~~~~~g~i~~L~~ll~  344 (552)
                      ..+..+-++++...|...+.
T Consensus       765 saqrvFgeatGFslLlttLh  784 (2799)
T KOG1788|consen  765 SAQRVFGEATGFSLLLTTLH  784 (2799)
T ss_pred             hheeehhccccHHHHHHHHH
Confidence            66667788888888776654

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=83.16  E-value=21  Score=35.28  Aligned_cols=197  Identities=20%  Similarity=0.161  Sum_probs=97.3

Q ss_pred             HHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccch
Q 008827          207 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAG  286 (552)
Q Consensus       207 i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~  286 (552)
                      +..+..++..+. +.......+.++..=+..-    ..-....++..+..-+++..+.+|+.++.+++...+...+....
T Consensus        24 ~~~l~~~~~KE~-nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~   98 (339)
T PF12074_consen   24 VQGLSPLLSKES-NEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL   98 (339)
T ss_pred             HHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence            345555555542 3444445555544332211    11123346788888899888889999999998887611111111


Q ss_pred             hhhccCcHHHHHHhhc----CCCHHHH----HHHHHHHHHhhcC-CchhHH-H----HHhhCcHHHHH---HhhcC-CCH
Q 008827          287 SFMNETIVIPLVRLLD----DTSTAVQ----VAALGAISNIVVD-FTTRRS-T----FIRLGGVKLLV---QLSKS-MDS  348 (552)
Q Consensus       287 ~~~~~~~i~~Lv~lL~----~~~~~v~----~~a~~aL~nl~~~-~~~~~~-~----~~~~g~i~~L~---~ll~~-~~~  348 (552)
                       -.-..++|.|++.++    ++-+..+    ..|...+. +... ...... .    .+..+-=|.++   ++... .++
T Consensus        99 -~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~  176 (339)
T PF12074_consen   99 -KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASE  176 (339)
T ss_pred             -HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCH
Confidence             233568888888884    2322211    11111121 1110 000000 0    00000000000   11111 233


Q ss_pred             HHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCC--ChhHHHHHHHHHHHhhcCCcch
Q 008827          349 TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDP--EPSVQEQALALVRNLVDGRINS  411 (552)
Q Consensus       349 ~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~  411 (552)
                      +...-.+.++..+..+......... .......++.++.++  .++++..|..++..+....+..
T Consensus       177 ~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~  240 (339)
T PF12074_consen  177 EDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL  240 (339)
T ss_pred             hHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence            3344455555555443222222222 233456677777777  8999999999999998887753

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=82.96  E-value=12  Score=31.66  Aligned_cols=94  Identities=10%  Similarity=0.089  Sum_probs=65.7

Q ss_pred             cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHH-HHHHHhh
Q 008827          387 CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKE-AVMDQLL  465 (552)
Q Consensus       387 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~-~i~~~~~  465 (552)
                      ..+|+......+..++.=..    ....       ++..+.+-|.+ +++.++..|+..|..+..++..... .|.+   
T Consensus        14 ~~~dw~~il~icD~I~~~~~----~~k~-------a~ral~KRl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~evas---   78 (144)
T cd03568          14 TSENWGLILDVCDKVKSDEN----GAKD-------CLKAIMKRLNH-KDPNVQLRALTLLDACAENCGKRFHQEVAS---   78 (144)
T ss_pred             CCcCHHHHHHHHHHHhcCCc----cHHH-------HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHhh---
Confidence            34566666666655553211    1111       56667777777 8999999999999999875543333 3433   


Q ss_pred             HhhhhhhHHHHHHhhcC-CChhHHHHHHHHHHhhc
Q 008827          466 LRAENKAQSCIIKFLQS-NDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       466 ~~~~~~~v~~Lv~lL~~-~~~~~~~~a~~~l~~l~  499 (552)
                          .+++..|++++.. .+..|+......+...+
T Consensus        79 ----k~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~  109 (144)
T cd03568          79 ----RDFTQELKKLINDRVHPTVKEKLREVVKQWA  109 (144)
T ss_pred             ----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence                7888999999988 78899999998887765

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=82.90  E-value=2.8  Score=45.64  Aligned_cols=123  Identities=16%  Similarity=0.193  Sum_probs=87.5

Q ss_pred             hHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcCC--HHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHH
Q 008827           53 SGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGS--LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIV  130 (552)
Q Consensus        53 ~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll  130 (552)
                      +-.+.-+++++|-..+.   +. ...+|.+++-|.-+  ..+|.+...+++.+|..+....        ..++|.|..-+
T Consensus       948 ra~~vvTlakmcLah~~---La-Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~--------d~YiP~I~~~L 1015 (1529)
T KOG0413|consen  948 RAVGVVTLAKMCLAHDR---LA-KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMT--------DRYIPMIAASL 1015 (1529)
T ss_pred             HHHHHHHHHHHHhhhhH---HH-HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHH--------HHhhHHHHHHh
Confidence            44455566776643221   11 12467777777642  3677788888888886553332        56889999999


Q ss_pred             hcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHh--HHHHHHHhcCCCCchhchHHHHHHHhhcC
Q 008827          131 KDRFARTRLLASLCLIVIRNASPCYLQDVGIKTK--LINNLLELLDDPGRVGDEASFAFSSLIAE  193 (552)
Q Consensus       131 ~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g--~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~  193 (552)
                      .|+++.||..+...|.++.+-+      .+.+.|  .+..+..+++.+++++..|-++++.+...
T Consensus      1016 ~Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred             cCchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999988742      233444  57778888888899999999999887654

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=82.50  E-value=65  Score=33.85  Aligned_cols=181  Identities=16%  Similarity=0.094  Sum_probs=107.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc--C---------CCHHHHHHHHHHHHHh
Q 008827          251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD--D---------TSTAVQVAALGAISNI  319 (552)
Q Consensus       251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~--~---------~~~~v~~~a~~aL~nl  319 (552)
                      +++++-.-.+++.+|...|-..|..+...        +.+..++..|+.+..  .         .++.+|......|+.=
T Consensus       239 ~~~~liAsad~~~~V~~~ae~~LKr~~~~--------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS  310 (501)
T PF13001_consen  239 FPPLLIASADSNSSVSDRAEDLLKRLSVS--------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKS  310 (501)
T ss_pred             HhheeeEEeCCcchHHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHh
Confidence            33333344567788888888888777654        345677888888766  2         3678888877777641


Q ss_pred             hcCCchhHHHHHhhCcHHHHHHhhcCC--CHHHHHHHHHHH---HHhcccCChHhHHHHHHhhcHHHHHhhh--------
Q 008827          320 VVDFTTRRSTFIRLGGVKLLVQLSKSM--DSTIRLNALRAL---RNLIFLAEDKCKEEIFMELTASLLASLI--------  386 (552)
Q Consensus       320 ~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL---~~l~~~~~~~~~~~i~~~~~~~~l~~ll--------  386 (552)
                      ..      ..-.....+..+..-+.++  +.++|..++..+   .....+.++.. -..+.......+..++        
T Consensus       311 ~~------Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~-l~~l~~~i~~~g~p~~~~~~~~~~  383 (501)
T PF13001_consen  311 VI------AATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQI-LKLLRPVILSQGWPLIQDSSSQSN  383 (501)
T ss_pred             HH------HHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHH-HHHHHHHHHhcCccccccccccCC
Confidence            10      0111123444444555555  567777777766   55444333321 1122222233333333        


Q ss_pred             cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcC
Q 008827          387 CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT  451 (552)
Q Consensus       387 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~  451 (552)
                      ...+...+..+-.+|+.++...|.....=++    ++..|-+.|.+ ..++++...-.+|+.++.
T Consensus       384 ~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~----li~~LF~sL~~-~~~evr~sIqeALssl~~  443 (501)
T PF13001_consen  384 SSEDIELRSLAYETLGLLAKRAPSLFSKDLS----LIEFLFDSLED-ESPEVRVSIQEALSSLAP  443 (501)
T ss_pred             CcccHHHHHHHHHHHHHHHccCcccccccHH----HHHHHHHHhhC-cchHHHHHHHHHHHHHHH
Confidence            1345678888999999999887754311122    56677676755 778888887777777765

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=82.39  E-value=28  Score=33.04  Aligned_cols=159  Identities=18%  Similarity=0.123  Sum_probs=87.3

Q ss_pred             HHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHh-Cc-HHHHHHhhhcCC--CChhhHHHHHHHHHHhhcCCh
Q 008827          165 LINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEV-NG-VDKLYNHLQKGS--LHPRRFEGILLALADMCSKLE  239 (552)
Q Consensus       165 ~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~-i~~L~~~L~~~~--~~~~~~~~a~~aL~~l~~~~~  239 (552)
                      ....+.+++. .+.+-+.-+...+.-++. ++......... ++ ...+..++....  ..+..+.-++++++|+-. ++
T Consensus        64 ~~~~~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~-~~  141 (268)
T PF08324_consen   64 WLILLLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFS-HP  141 (268)
T ss_dssp             HHHHHHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTT-SC
T ss_pred             HHHHHHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhC-CC
Confidence            3444455544 334445555555543333 33332222222 22 344444443332  346677889999999865 45


Q ss_pred             hHHHHHHhcc--cHHHHHHhcCCC----CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh-cC-CCHHHHHH
Q 008827          240 CCRSRCLSLQ--VLKLVVDALAHD----SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-DD-TSTAVQVA  311 (552)
Q Consensus       240 ~~~~~~~~~~--~l~~lv~~L~~~----~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL-~~-~~~~v~~~  311 (552)
                      ..+..+.+..  .+...+..+...    +..+|.+++.++.|++-.....+...-.....+..+++.+ .. .++|....
T Consensus       142 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R  221 (268)
T PF08324_consen  142 PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR  221 (268)
T ss_dssp             CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred             ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            5666555432  233333333333    7899999999999997542221101011223466666633 32 69999999


Q ss_pred             HHHHHHHhhcCCch
Q 008827          312 ALGAISNIVVDFTT  325 (552)
Q Consensus       312 a~~aL~nl~~~~~~  325 (552)
                      ++.|++++....+.
T Consensus       222 ~LvAlGtL~~~~~~  235 (268)
T PF08324_consen  222 LLVALGTLLSSSDS  235 (268)
T ss_dssp             HHHHHHHHHCCSHH
T ss_pred             HHHHHHHHhccChh
Confidence            99999999965443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=82.25  E-value=45  Score=32.42  Aligned_cols=156  Identities=17%  Similarity=0.177  Sum_probs=93.6

Q ss_pred             CcHHHHHHhhc-C---CCHHHHHHHHHHHHHhhcCCchhHHHHHhh-------Cc----HHHHHHhhc------CCCHHH
Q 008827          292 TIVIPLVRLLD-D---TSTAVQVAALGAISNIVVDFTTRRSTFIRL-------GG----VKLLVQLSK------SMDSTI  350 (552)
Q Consensus       292 ~~i~~Lv~lL~-~---~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~-------g~----i~~L~~ll~------~~~~~v  350 (552)
                      .++..|+.++- .   ..-.+|.+|+.++.....+++..+..+++.       +.    ...+++-+-      +.|+.-
T Consensus        34 pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~  113 (312)
T PF04869_consen   34 PVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYR  113 (312)
T ss_dssp             EHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHH
T ss_pred             cHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHH
Confidence            44555665542 2   256899999999999998888888766643       11    112443333      235545


Q ss_pred             HHHHHHHHHHhcccCChHhHHHHHHh------------hcHHHHHhhhc-----CCChhHHHHHHHHHHHhhcCCcchHH
Q 008827          351 RLNALRALRNLIFLAEDKCKEEIFME------------LTASLLASLIC-----DPEPSVQEQALALVRNLVDGRINSVE  413 (552)
Q Consensus       351 ~~~a~~aL~~l~~~~~~~~~~~i~~~------------~~~~~l~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~  413 (552)
                      ...|..+|.++.. .+++.|+.++.-            ..++.+..+|.     +.++.++..-+.+|.--...+++.+.
T Consensus       114 ~wfAa~il~hll~-dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~  192 (312)
T PF04869_consen  114 CWFAAVILMHLLR-DNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVN  192 (312)
T ss_dssp             HHHHHHHHHHHHT-T-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHh-cCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHH
Confidence            5568888888877 445677665542            13445555442     45777888888888888888999999


Q ss_pred             HHHhhcCchHHHHHHHhcccC--chhHHHHHHHHHHhh
Q 008827          414 YIFAEDGIILDAVGRQLRIAS--KAEIEIQGMYVLGNV  449 (552)
Q Consensus       414 ~i~~~~~~~~~~l~~~L~~~~--~~~v~~~a~~~L~~l  449 (552)
                      ..+++++ .++.|+.....++  ++-|+--++..|+-+
T Consensus       193 ~FL~~~s-~l~~Li~~~~~~~~~~~~VqGL~A~LLGic  229 (312)
T PF04869_consen  193 DFLSEGS-NLQSLIEFSNQSSSEDVLVQGLCAFLLGIC  229 (312)
T ss_dssp             HHHCSTT-HHHHHHHHHS--TCCCHHHHHHHHHHHHHH
T ss_pred             HHHcCcc-hHHHHHHHhhcCCCCcchHHHHHHHHHHHH
Confidence            9998876 5677777553323  344555555555543

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=81.41  E-value=66  Score=32.77  Aligned_cols=234  Identities=15%  Similarity=0.120  Sum_probs=132.2

Q ss_pred             hhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhcccCC
Q 008827          288 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAE  366 (552)
Q Consensus       288 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~  366 (552)
                      ..+...+..|+.+++++|++-|......|.++-..+...+. ++.......+.++.... .+.--...+..++.+..+-.
T Consensus       129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~-~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~  207 (409)
T PF01603_consen  129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRS-FIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFA  207 (409)
T ss_dssp             TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHH-HHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred             HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence            57778899999999999999999999999998766655554 44455667777777643 34455667778887765432


Q ss_pred             hHhHHHHHHhhcHHHHHhhhcCCChh-HHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHH
Q 008827          367 DKCKEEIFMELTASLLASLICDPEPS-VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYV  445 (552)
Q Consensus       367 ~~~~~~i~~~~~~~~l~~ll~~~~~~-v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~  445 (552)
                      ...+++- .......++.|...+... ...+-..++..++..++.....++       ..+.+..-. .++.-+.-.+.-
T Consensus       208 ~plk~eh-~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-------~~llk~WP~-t~s~Kev~FL~e  278 (409)
T PF01603_consen  208 VPLKEEH-KQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-------KGLLKHWPK-TNSQKEVLFLNE  278 (409)
T ss_dssp             SS--HHH-HHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-------HHHHHHS-S-S-HHHHHHHHHH
T ss_pred             CCCcHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-------HHHHHhCCC-CCchhHHHHHHH
Confidence            1122211 112234455555554432 344555555555555554333322       222222211 233334444555


Q ss_pred             HHhhcCCC-hhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCC---cHHH
Q 008827          446 LGNVATGK-ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAG---IVSH  521 (552)
Q Consensus       446 L~~la~~~-~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g---~~~~  521 (552)
                      +..+.... +.....+.        ..+...+...++|.+..|-+.|.....|=          ....+....   +++.
T Consensus       279 l~~il~~~~~~~f~~i~--------~~lf~~la~ci~S~h~qVAErAl~~w~n~----------~~~~li~~~~~~i~p~  340 (409)
T PF01603_consen  279 LEEILEVLPPEEFQKIM--------VPLFKRLAKCISSPHFQVAERALYFWNNE----------YFLSLISQNSRVILPI  340 (409)
T ss_dssp             HHHHHTT--HHHHHHHH--------HHHHHHHHHHHTSSSHHHHHHHHGGGGSH----------HHHHHHHCTHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHCCH----------HHHHHHHhChHHHHHH
Confidence            55555422 23333343        35667888999999999988886544221          222333333   3444


Q ss_pred             HHhhhc-----CCCccHHHHHHHHHHHHhhhcC
Q 008827          522 VKNMVN-----DPCLDVKLRVKTALEQFNSFDD  549 (552)
Q Consensus       522 L~~ll~-----~~~~~v~~~a~~al~~~~~~~~  549 (552)
                      +..-+.     .=+..++..|..++..+.+.+.
T Consensus       341 i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~  373 (409)
T PF01603_consen  341 IFPALYRNSKNHWNQTVRNLAQNVLKILMEMDP  373 (409)
T ss_dssp             HHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCH
Confidence            444332     1257799999999988877643

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=81.10  E-value=36  Score=35.52  Aligned_cols=106  Identities=16%  Similarity=0.203  Sum_probs=75.4

Q ss_pred             hCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchH
Q 008827          333 LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV  412 (552)
Q Consensus       333 ~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  412 (552)
                      .|.+..+++-+.+++..||.+++..|+.+.....  .-.+.+-.+.+..|.+-+-+-.+.|+.+|+.+|..+-....+- 
T Consensus        90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~--eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-  166 (885)
T COG5218          90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR--EIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-  166 (885)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-
Confidence            4677788888888999999999999988754322  1224455566666777777888899999999998875331110 


Q ss_pred             HHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHH
Q 008827          413 EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLG  447 (552)
Q Consensus       413 ~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~  447 (552)
                            ...+...|..++++.|+.+|+..++.-+.
T Consensus       167 ------en~~~n~l~~~vqnDPS~EVRr~allni~  195 (885)
T COG5218         167 ------ENRIVNLLKDIVQNDPSDEVRRLALLNIS  195 (885)
T ss_pred             ------HHHHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence                  01156677788888899999998876554

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=80.47  E-value=30  Score=31.33  Aligned_cols=106  Identities=12%  Similarity=0.135  Sum_probs=73.0

Q ss_pred             HHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc---C--CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHh
Q 008827          310 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK---S--MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS  384 (552)
Q Consensus       310 ~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~--~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~  384 (552)
                      ..|...|-.++. .++.|..++++..---+..++.   +  ..+.+|..++..++.+..+.++.....+....++|..++
T Consensus       118 cnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr  196 (315)
T COG5209         118 CNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR  196 (315)
T ss_pred             HHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence            344444444554 4555555655543222223332   1  246689999999999999888888888888899999999


Q ss_pred             hhcCCChhHHHHHHHHHHHhhcCCcchHHHHHh
Q 008827          385 LICDPEPSVQEQALALVRNLVDGRINSVEYIFA  417 (552)
Q Consensus       385 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~  417 (552)
                      ++...++--+.-++.++..+..++ ...+++.+
T Consensus       197 Ime~gSElSktvaifI~qkil~dD-vGLqYiCq  228 (315)
T COG5209         197 IMELGSELSKTVAIFIFQKILGDD-VGLQYICQ  228 (315)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccc-hhHHHHHH
Confidence            999998888888888888877654 34555544

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=80.41  E-value=14  Score=32.05  Aligned_cols=145  Identities=14%  Similarity=0.147  Sum_probs=79.9

Q ss_pred             cHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccc
Q 008827          206 GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA  285 (552)
Q Consensus       206 ~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~  285 (552)
                      .++.|+++|+++ .++.+|..++++|+-+..-|+.-.+.+....-  .-  .-...+......   .+.+...+  ....
T Consensus        11 LL~~L~~iLk~e-~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~--~~~~~~~~~~~~---~l~~~~~~--~~~e   80 (160)
T PF11865_consen   11 LLDILLNILKTE-QSQSIRREALRVLGILGALDPYKHKSIQKSLD--SK--SSENSNDESTDI---SLPMMGIS--PSSE   80 (160)
T ss_pred             HHHHHHHHHHhC-CCHHHHHHHHHHhhhccccCcHHHhcccccCC--cc--ccccccccchhh---HHhhccCC--CchH
Confidence            467788888887 46889999999999997765544332211100  00  000111111111   11111111  1112


Q ss_pred             hhhhccCcHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827          286 GSFMNETIVIPLVRLLDDTS-TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI  362 (552)
Q Consensus       286 ~~~~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  362 (552)
                      . +.-..++..|++.|+|+. ..-...++.++.++..........++ ...+|.++..++..+...++.-.+-|+.+.
T Consensus        81 e-~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 E-YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             H-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            2 455677888999998763 23344566666666532222111222 357888888888777677777776666653

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	552
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-29
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-14
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-05
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-04
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-27
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-20
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-11
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-10
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	7e-24
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-09
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-06
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-23
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-23
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-21
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	7e-10
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	9e-04
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-23
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-22
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-23
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-22
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-16
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-16
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-10
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-22
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-21
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-18
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-17
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-15
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-20
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-20
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-19
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-16
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-14
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-12
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	7e-20
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-16
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-16
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-14
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-13
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-19
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-15
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-15
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-12
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-04
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-19
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	7e-16
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-13
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-16
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-13
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-13
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-12
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-11
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-04
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	7e-13
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-10
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-10
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-08
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-08
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-07
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	4e-10
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-09
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	6e-09
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-09
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	7e-07
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-09
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-06
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	6e-09
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-06
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	4e-04
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	3e-06
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	6e-04
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	4e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-04
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-04
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	5e-05
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-04
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	3e-04
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	5e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	8e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	4e-04
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	9e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-04
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	6e-04

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  118 bits (297), Expect = 8e-29
 Identities = 70/443 (15%), Positives = 163/443 (36%), Gaps = 26/443 (5%)

Query: 119 TGRTLSCIIEIVKDRFARTRLLASLCL--IVIRNASPCYLQDVGIKTKLINNLLELLD-- 174
            G   S +IE++  +    +L A+     ++ +  +P  + +V     ++   +E L   
Sbjct: 18  GGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPP-IDEVISTPGVVARFVEFLKRK 76

Query: 175 DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADM 234
           +   +  E+++  +++ +      ++  +   V      L   S      E  + AL ++
Sbjct: 77  ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS--SEFEDVQEQAVWALGNI 134

Query: 235 CSKLECCRSRCLSLQVLKLVVDALAHDSS-DVRSAACMCLRSVSRSIKNLSAGSFMNETI 293
                 CR   L   +L  ++   +  +   +   A   L ++ R  K+           
Sbjct: 135 AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG-KSPPPEFAKVSPC 193

Query: 294 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN 353
           +  L  LL  + T V   A  A+S +      +    I  G  + LV+L    D  +   
Sbjct: 194 LNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSP 253

Query: 354 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVE 413
           ALRA+ N++   +D   + I        L  L+  P+ S++++A   + N+  G    ++
Sbjct: 254 ALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQ 312

Query: 414 YIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ 473
            +   +  I  A+   L+ A       +  + + N  +G  +      +Q+    E    
Sbjct: 313 TVIDAN--IFPALISILQTAE-FRTRKEAAWAITNATSGGSA------EQIKYLVELGCI 363

Query: 474 SCIIKFLQSNDSRLRTAAVWAVLNLTCSS-------SPGSSGRLVKLHDAGIVSHVKNMV 526
             +   L   DS++   A+  + N+             G +     + +A  +  ++ + 
Sbjct: 364 KPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQ 423

Query: 527 NDPCLDVKLRVKTALEQFNSFDD 549
           +    ++  +    +E +   +D
Sbjct: 424 SHENQEIYQKAFDLIEHYFGTED 446

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 75.3 bits (185), Expect = 1e-14
 Identities = 54/344 (15%), Positives = 106/344 (30%), Gaps = 50/344 (14%)

Query: 63  SCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRT 122
           +   SL+ +++  AG +     LL                      +V  Q V       
Sbjct: 93  ASGNSLQTRIVIQAGAVPIFIELLS-----------------SEFEDVQEQAV-----WA 130

Query: 123 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVG-- 180
           L  I                              +D  +   ++  LL+L     R+   
Sbjct: 131 LGNIA-----------------------GDSTMCRDYVLDCNILPPLLQLFSKQNRLTMT 167

Query: 181 DEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC 240
             A +A S+L   K    + A     ++ L   L               AL+ +      
Sbjct: 168 RNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS--DTDVLADACWALSYLSDGPND 225

Query: 241 CRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL 300
                +   V + +V+ L H+   V S A   + ++       +    +N + +  L+ L
Sbjct: 226 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQ-VILNCSALQSLLHL 284

Query: 301 LDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN 360
           L     +++  A   ISNI      +  T I       L+ + ++ +   R  A  A+ N
Sbjct: 285 LSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344

Query: 361 LIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 404
                  +  + +        L  L+   +  + + AL  + N+
Sbjct: 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 9/140 (6%)

Query: 365 AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV-DGRINSVEYIFAEDGIIL 423
           A+    E     +  S +  +I    P  Q  A    R L+       ++ + +  G++ 
Sbjct: 8   AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67

Query: 424 DAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN 483
             V   L+      ++ +  +VL N+A+G       V+    +          I+ L S 
Sbjct: 68  RFV-EFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPI-------FIELLSSE 119

Query: 484 DSRLRTAAVWAVLNLTCSSS 503
              ++  AVWA+ N+   S+
Sbjct: 120 FEDVQEQAVWALGNIAGDST 139

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 54/373 (14%), Positives = 98/373 (26%), Gaps = 103/373 (27%)

Query: 8   MEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTS 67
           + +      +L  + + K  P         +  L  LL     +V       +S+     
Sbjct: 164 LTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223

Query: 68  LEQK-LLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCI 126
            ++   + DAGV +RL  LL                   N+ +VVS          L  +
Sbjct: 224 NDKIQAVIDAGVCRRLVELLM-----------------HNDYKVVSP--------ALRAV 258

Query: 127 IEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASF 185
             IV     +T+++                    +    + +LL LL  P   +  EA +
Sbjct: 259 GNIVTGDDIQTQVI--------------------LNCSALQSLLHLLSSPKESIKKEACW 298

Query: 186 AFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRC 245
             S++ A      +   + N    L + LQ                              
Sbjct: 299 TISNITAGNRAQIQTVIDANIFPALISILQTAEFR------------------------- 333

Query: 246 LSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS 305
                               R  A   + + +           +    + PL  LL    
Sbjct: 334 -------------------TRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD 374

Query: 306 TAVQVAALGAISNIVVDFTTRRST-----------FIRLGGVKLLVQLSKSMDSTIRLNA 354
           + +   AL  + NI+                         G+  +  L    +  I   A
Sbjct: 375 SKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKA 434

Query: 355 LRALRNLIFLAED 367
              + +  F  ED
Sbjct: 435 FDLIEH-YFGTED 446

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  115 bits (289), Expect = 2e-27
 Identities = 68/429 (15%), Positives = 154/429 (35%), Gaps = 26/429 (6%)

Query: 132 DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL--DDPGRVGDEASFAFSS 189
           D   +         I+ R   P    DV I+  ++  L+E +  + P  +  EA++A ++
Sbjct: 100 DMQEQLSATVKFRQILSREHRPP--IDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTN 157

Query: 190 LIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ 249
           + +      K+  + + V      L  GS+  +  E  + AL ++       R   L   
Sbjct: 158 IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK--EQAIWALGNVAGDSTDYRDYVLQCN 215

Query: 250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQ 309
            ++ ++     +   +   A   L ++ R  K       +    +  L +L+    T   
Sbjct: 216 AMEPILGLFNSNKPSLIRTATWTLSNLCRG-KKPQPDWSVVSQALPTLAKLIYSMDTETL 274

Query: 310 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC 369
           V A  AIS +           I +   K LV+L     + ++  ALRA+ N++    D  
Sbjct: 275 VDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT-GNDLQ 333

Query: 370 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQ 429
            + +        L  L+  P+ +++++A   + N+  G    ++ +   + I        
Sbjct: 334 TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP-----L 388

Query: 430 LRIASKAEIEIQ--GMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL 487
           +++   AE + +    + + N ++G         D +           +   L+  D+R+
Sbjct: 389 VKLLEVAEYKTKKEACWAISNASSGGLQRP----DIIRYLVSQGCIKPLCDLLEIADNRI 444

Query: 488 RTAAVWAVLNLTCSSSPGSSGR-------LVKLHDAGIVSHVKNMVNDPCLDVKLRVKTA 540
               + A+ N+          R          +  AG +  + N   +    +  +    
Sbjct: 445 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 504

Query: 541 LEQFNSFDD 549
           +E +   ++
Sbjct: 505 IETYFGEEE 513

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 92.8 bits (230), Expect = 3e-20
 Identities = 47/287 (16%), Positives = 117/287 (40%), Gaps = 16/287 (5%)

Query: 249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-DDTSTA 307
           Q L  +   L  D    + +A +  R +            +   +V  LV  + ++    
Sbjct: 87  QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 146

Query: 308 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED 367
           +Q+ A  A++NI    + +    +    V L +QL  +    ++  A+ AL N+   + D
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 206

Query: 368 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVG 427
             ++ +        +  L    +PS+   A   + NL  G+    ++      +   A  
Sbjct: 207 -YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA-- 263

Query: 428 RQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL 487
            +L  +   E  +   + +  ++ G +   +AV+D  + +        +++ L    + +
Sbjct: 264 -KLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR-------LVELLSHESTLV 315

Query: 488 RTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVK 534
           +T A+ AV N+  + +   +  ++   +AG++  ++ +++ P  ++K
Sbjct: 316 QTPALRAVGNI-VTGNDLQTQVVI---NAGVLPALRLLLSSPKENIK 358

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 65.8 bits (160), Expect = 1e-11
 Identities = 50/386 (12%), Positives = 115/386 (29%), Gaps = 62/386 (16%)

Query: 3   LLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISH 62
           L    +EV +    +L  +       +   LQ   ME +L L N+   ++       +S+
Sbjct: 182 LYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 241

Query: 63  SCKTSLEQK-LLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGR 121
            C+    Q      +  L  L  L+                 +  + E +          
Sbjct: 242 LCRGKKPQPDWSVVSQALPTLAKLI-----------------YSMDTETLVD-------- 276

Query: 122 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVG 180
                              A   +  + +     +Q   I  ++   L+ELL      V 
Sbjct: 277 -------------------ACWAISYLSDGPQEAIQ-AVIDVRIPKRLVELLSHESTLVQ 316

Query: 181 DEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC 240
             A  A  +++   +   ++      +  L   L     + ++       ++++ +    
Sbjct: 317 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKE--ACWTISNITAGNTE 374

Query: 241 CRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA--GSFMNETIVIPLV 298
                +   ++  +V  L       +  AC  + + S             +++  + PL 
Sbjct: 375 QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 434

Query: 299 RLLDDTSTAVQVAALGAISNIVVDFTTRRST-----------FIRLGGVKLLVQLSKSMD 347
            LL+     +    L A+ NI+      +               + GG++ +    ++ +
Sbjct: 435 DLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 494

Query: 348 STIRLNALRALRNLIFLAEDKCKEEI 373
             I   A + +       ED   E +
Sbjct: 495 DKIYEKAYKIIETYFGEEEDAVDETM 520

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 33/209 (15%), Positives = 73/209 (34%), Gaps = 15/209 (7%)

Query: 334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME-LTASLLASLICDPEPS 392
             +  + Q   S D   +L+A    R ++        + +    +   L+  +  +    
Sbjct: 87  QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 146

Query: 393 VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATG 452
           +Q +A   + N+  G     + +   D +      + L   S  E++ Q ++ LGNVA  
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAV--PLFIQLLYTGSV-EVKEQAIWALGNVAGD 203

Query: 453 KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVK 512
              +++ V+    +         I+    SN   L   A W + NL     P     +V 
Sbjct: 204 STDYRDYVLQCNAMEP-------ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV- 255

Query: 513 LHDAGIVSHVKNMVNDPCLDVKLRVKTAL 541
              +  +  +  ++     +  +    A+
Sbjct: 256 ---SQALPTLAKLIYSMDTETLVDACWAI 281

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  100 bits (251), Expect = 7e-24
 Identities = 52/260 (20%), Positives = 98/260 (37%), Gaps = 4/260 (1%)

Query: 186 AFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRC 245
                  E E M+     ++          + +   +  EG L  LAD+C  ++     C
Sbjct: 19  HMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFC 78

Query: 246 LSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DT 304
               +  LV   L   ++ +R  A   + + S+++  +     +    +  L+RLLD D 
Sbjct: 79  QLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAI-QEQVLGLGALRKLLRLLDRDA 137

Query: 305 STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL 364
              V+V AL AIS +V +       F+RL G  +L++  +     +++ +   L+NL+  
Sbjct: 138 CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197

Query: 365 AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILD 424
             +       M +    L +L+        E  L  + +LV      V     E  + L+
Sbjct: 198 HPEHKGTLCSMGMV-QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR-ECREPELGLE 255

Query: 425 AVGRQLRIASKAEIEIQGMY 444
            + R      +   E Q   
Sbjct: 256 ELLRHRCQLLQQHEEYQEEL 275

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 58.9 bits (142), Expect = 1e-09
 Identities = 29/211 (13%), Positives = 67/211 (31%), Gaps = 20/211 (9%)

Query: 337 KLLVQLSKSMDSTIRLNALRALRNL---IFLAEDKCKEEIFMELTASLLASLICDPEPSV 393
               +  ++ D   R  AL  L +L   +  A D C+    +     L+   +      +
Sbjct: 43  PTAGEAEQAADQQEREGALELLADLCENMDNAADFCQ----LSGMHLLVGRYLEAGAAGL 98

Query: 394 QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK 453
           + +A  L+           E +       L  + R L   +   + ++ ++ +  +   +
Sbjct: 99  RWRAAQLIGTCSQNVAAIQEQVLGLGA--LRKLLRLLDRDACDTVRVKALFAISCLVREQ 156

Query: 454 ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKL 513
           E+     +            S +++ +Q    +L+  + + + NL              L
Sbjct: 157 EAGLLQFLRL-------DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE----HKGTL 205

Query: 514 HDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 544
              G+V  +  +V          V  AL   
Sbjct: 206 CSMGMVQQLVALVRTEHSPFHEHVLGALCSL 236

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 5/143 (3%)

Query: 138 RLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL--DDPGRVGDEASFAFSSLIAEKE 195
           R  A+  +          +Q+  +    +  LL LL  D    V  +A FA S L+ E+E
Sbjct: 99  RWRAAQLIGTCSQNVA-AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157

Query: 196 DMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVV 255
                   ++G   L   +Q+     +        L ++       +    S+ +++ +V
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVK--SAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215

Query: 256 DALAHDSSDVRSAACMCLRSVSR 278
             +  + S         L S+  
Sbjct: 216 ALVRTEHSPFHEHVLGALCSLVT 238

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  103 bits (257), Expect = 2e-23
 Identities = 70/430 (16%), Positives = 152/430 (35%), Gaps = 68/430 (15%)

Query: 122 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL--DDPGRV 179
           ++  I++ +      ++L A+     + +       D  I+  LI   +  L   D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117

Query: 180 GDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE 239
             E+++A +++ +   +  K   +   +    + L   S H    E  + AL ++     
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGDGS 175

Query: 240 CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVI---- 295
             R   +    +  ++  LA       +     LR+++ ++ NL         +      
Sbjct: 176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGY--LRNLTWTLSNLCRNKNPAPPLDAVEQI 233

Query: 296 --PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN 353
              LVRLL      V   +  AIS +      R    ++ G V  LV+L  + +  I   
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293

Query: 354 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVE 413
           ALRA+ N I    D+  +++      ++  SL+ +P+ ++Q++A                
Sbjct: 294 ALRAIGN-IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA---------------- 336

Query: 414 YIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ 473
                                         + + N+  G++   + V++  L+       
Sbjct: 337 -----------------------------TWTMSNITAGRQDQIQQVVNHGLVPF----- 362

Query: 474 SCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDV 533
             ++  L   D + +  A WA+ N T   +      LV     GI+  + N+++     +
Sbjct: 363 --LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV---HCGIIEPLMNLLSAKDTKI 417

Query: 534 KLRVKTALEQ 543
              +  A+  
Sbjct: 418 IQVILDAISN 427

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  101 bits (252), Expect = 5e-23
 Identities = 61/372 (16%), Positives = 133/372 (35%), Gaps = 10/372 (2%)

Query: 131 KDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSS 189
           K   +  +  ++  L  I + +    + V +    I   + LL  P   + ++A +A  +
Sbjct: 111 KTDCSPIQFESAWALTNIASGTSEQTKAV-VDGGAIPAFISLLASPHAHISEQAVWALGN 169

Query: 190 LIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRR---FEGILLALADMCSKLECCRSRCL 246
           +  +    + L  +   +D L   L    L          +   L+++C           
Sbjct: 170 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA 229

Query: 247 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTST 306
             Q+L  +V  L H+  +V + +C  +  ++           + + +V  LV+LL  T  
Sbjct: 230 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE-MVVKKGVVPQLVKLLGATEL 288

Query: 307 AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAE 366
            +   AL AI NIV     +    I  G + +   L  +  + I+  A   + N+    +
Sbjct: 289 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ 348

Query: 367 DKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAV 426
           D+ ++ +   L   L+  ++   +   Q++A   + N   G            GII + +
Sbjct: 349 DQIQQVVNHGLVPFLV-GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGII-EPL 406

Query: 427 GRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSR 486
              L      +I    +  + N+    E   E     +++  E      I    +  +  
Sbjct: 407 MNLLSAKD-TKIIQVILDAISNIFQAAEKLGETEKLSIMIE-ECGGLDKIEALQRHENES 464

Query: 487 LRTAAVWAVLNL 498
           +  A++  +   
Sbjct: 465 VYKASLNLIEKY 476

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 97.0 bits (241), Expect = 1e-21
 Identities = 58/362 (16%), Positives = 126/362 (34%), Gaps = 29/362 (8%)

Query: 192 AEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSR----CLS 247
           A  +           V+ +   +   +      E  L A       L   +       + 
Sbjct: 44  AMADIGSNQGTVNWSVEDIVKGINSNN-----LESQLQATQAARKLLSREKQPPIDNIIR 98

Query: 248 LQVLKLVVDALAH-DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTST 306
             ++   V  L   D S ++  +   L +++ S  +    + ++   +   + LL     
Sbjct: 99  AGLIPKFVSFLGKTDCSPIQFESAWALTNIA-SGTSEQTKAVVDGGAIPAFISLLASPHA 157

Query: 307 AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR--ALRNLIFL 364
            +   A+ A+ NI  D +  R   I+ G +  L+ L    D +             L  L
Sbjct: 158 HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217

Query: 365 AEDK--CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGII 422
             +K        +E     L  L+   +P V   +   +  L DG    +E +  + G++
Sbjct: 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMV-VKKGVV 276

Query: 423 LDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS 482
              V  +L  A++  I    +  +GN+ TG +   + V+D   L             L +
Sbjct: 277 PQLV--KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA-------VFPSLLTN 327

Query: 483 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE 542
             + ++  A W + N+T     G   ++ ++ + G+V  +  +++      +     A+ 
Sbjct: 328 PKTNIQKEATWTMSNITA----GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT 383

Query: 543 QF 544
            +
Sbjct: 384 NY 385

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 60.4 bits (146), Expect = 7e-10
 Identities = 43/271 (15%), Positives = 89/271 (32%), Gaps = 48/271 (17%)

Query: 312 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE 371
            LG   +         +       V+ +V+   S +   +L A +A R L+   +    +
Sbjct: 35  DLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPID 94

Query: 372 EIFME-LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL 430
            I    L    ++ L       +Q ++   + N+  G     + +   DG  + A    L
Sbjct: 95  NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVV--DGGAIPAFISLL 152

Query: 431 RIASKAEIEIQGMYVLGNVATGKESHKEAVMD--------QLLLRAENKAQSC------- 475
             +  A I  Q ++ LGN+A    + ++ V+          LL   +    +C       
Sbjct: 153 A-SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 211

Query: 476 -------------------------IIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRL 510
                                    +++ L  ND  +   + WA+  LT   +     R+
Sbjct: 212 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE----RI 267

Query: 511 VKLHDAGIVSHVKNMVNDPCLDVKLRVKTAL 541
             +   G+V  +  ++    L +      A+
Sbjct: 268 EMVVKKGVVPQLVKLLGATELPIVTPALRAI 298

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 41.2 bits (96), Expect = 9e-04
 Identities = 45/314 (14%), Positives = 99/314 (31%), Gaps = 57/314 (18%)

Query: 15  ARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQK-LL 73
             +L  + ++K         E+ +  L+ LL++    V       IS+      E+  ++
Sbjct: 211 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMV 270

Query: 74  FDAGVLKRLTSLLG-GSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKD 132
              GV+ +L  LLG   L     +L +I  I     E                       
Sbjct: 271 VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE----------------------- 307

Query: 133 RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLI 191
                                       I    +     LL +P   +  EA++  S++ 
Sbjct: 308 -----------------------QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 344

Query: 192 AEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL-SLQV 250
           A ++D  +       V  L   L K     ++      A+ +  S     +   L    +
Sbjct: 345 AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE--AAWAITNYTSGGTVEQIVYLVHCGI 402

Query: 251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETI-----VIPLVRLLDDTS 305
           ++ +++ L+   + +       + ++ ++ + L     ++  I     +  +  L    +
Sbjct: 403 IEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN 462

Query: 306 TAVQVAALGAISNI 319
            +V  A+L  I   
Sbjct: 463 ESVYKASLNLIEKY 476

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 98.1 bits (245), Expect = 3e-23
 Identities = 53/250 (21%), Positives = 99/250 (39%), Gaps = 12/250 (4%)

Query: 250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQ 309
            L  +   L  D    + +A      +  S  N    + ++   +  LV+LL   +  + 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQIL-SDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 310 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC 369
             AL A+SNI      +    I  G +  LVQL  S +  I   AL AL N+     ++ 
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQ 130

Query: 370 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQ 429
            + +        L  L+  P   + ++AL  + N+  G    ++ +  + G +   V  Q
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV-IDAGALPALV--Q 187

Query: 430 LRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRT 489
           L  +   +I  + ++ L N+A+G    K+AV        E  A   + +     + +++ 
Sbjct: 188 LLSSPNEQILQEALWALSNIASGGNEQKQAV-------KEAGALEKLEQLQSHENEKIQK 240

Query: 490 AAVWAVLNLT 499
            A  A+  L 
Sbjct: 241 EAQEALEKLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 94.7 bits (236), Expect = 5e-22
 Identities = 49/251 (19%), Positives = 105/251 (41%), Gaps = 19/251 (7%)

Query: 296 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNAL 355
            + + L+      Q++A    S I+ D   +    I  G +  LVQL  S +  I   AL
Sbjct: 16  QMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75

Query: 356 RALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 415
            AL N+     ++  + +        L  L+  P   + ++AL  + N+  G    ++ +
Sbjct: 76  WALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134

Query: 416 FAEDGIILDAVGRQLRIASKAEIEIQ--GMYVLGNVATGKESHKEAVMDQLLLRAENKAQ 473
                +   A+   +++ S    +I    ++ L N+A+G     +AV+D   L A     
Sbjct: 135 IDAGAL--PAL---VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA----- 184

Query: 474 SCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDV 533
             +++ L S + ++   A+WA+ N+    +         + +AG +  ++ + +     +
Sbjct: 185 --LVQLLSSPNEQILQEALWALSNIASGGNEQK----QAVKEAGALEKLEQLQSHENEKI 238

Query: 534 KLRVKTALEQF 544
           +   + ALE+ 
Sbjct: 239 QKEAQEALEKL 249

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 43/289 (14%), Positives = 87/289 (30%), Gaps = 64/289 (22%)

Query: 41  LLSLLNNESENVSGLGASIISHSCKTSLEQK-LLFDAGVLKRLTSLLG-GSLIQRDASLE 98
           +   LN++            S       EQ   + DAG L  L  LL   +      +L 
Sbjct: 17  MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76

Query: 99  SIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQD 158
           +++ I     E +                                    + +A       
Sbjct: 77  ALSNIASGGNEQIQ----------------------------------AVIDA------- 95

Query: 159 VGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKG 217
                  +  L++LL  P  ++  EA +A S++ +   +  +   +   +  L   L   
Sbjct: 96  -----GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 150

Query: 218 SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVS 277
           +    +    L AL+++ S         +    L  +V  L+  +  +   A   L    
Sbjct: 151 NEQILQ--EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS--- 205

Query: 278 RSIKNLSAGSFMNETIVI------PLVRLLDDTSTAVQVAALGAISNIV 320
               N+++G    +  V        L +L    +  +Q  A  A+  + 
Sbjct: 206 ----NIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  102 bits (256), Expect = 4e-23
 Identities = 71/529 (13%), Positives = 166/529 (31%), Gaps = 49/529 (9%)

Query: 41  LLSLLNNESENVSGLGASIISH-SCKTSLEQKLLFDAGVLKRLTSLLGGS---LIQRDAS 96
           L  LLN+E + V    A ++   S K +    ++    ++  +   +  +      R  S
Sbjct: 155 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTS 214

Query: 97  --LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC 154
             L +++   +    +            +  ++ ++          A   L  +      
Sbjct: 215 GTLHNLSHHREGLLAIFKSGG-------IPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267

Query: 155 YLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNH 213
               V      +  ++ LL+    +     +     L    ++ + +     G   L N 
Sbjct: 268 AKMAV-RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 326

Query: 214 LQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCL 273
           ++  +     +      +  + S     +   +    ++ +   L   S  +       L
Sbjct: 327 MRTYTYEKLLWT--TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 384

Query: 274 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL 333
           R++S +           E ++  LV+LL      V   A G +SN+  +    +    ++
Sbjct: 385 RNLSDAATKQEG----MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 440

Query: 334 GGVKLLVQL--SKSMDSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDP 389
           GG++ LV+          I   A+ ALR+L    +D    +  + +     ++  L+  P
Sbjct: 441 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP 500

Query: 390 EP-SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGN 448
               + +  + L+RNL     N       E G I   V  QL + +  + + +       
Sbjct: 501 SHWPLIKATVGLIRNLALCPANHAP--LREQGAIPRLV--QLLVRAHQDTQRRTSMGGTQ 556

Query: 449 VATGKESHKEAVMDQ-------LLLRAENKAQ-------SCIIKFLQSNDSRLRTAAVWA 494
               +    E +++        L     N+            ++ L S    ++  A   
Sbjct: 557 QQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 616

Query: 495 VLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQ 543
           +  L              +   G  + +  +++     V       L +
Sbjct: 617 LCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 660

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 99.3 bits (247), Expect = 5e-22
 Identities = 47/362 (12%), Positives = 109/362 (30%), Gaps = 24/362 (6%)

Query: 182 EASFAFSSLIAEKEDMQKLA-FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC 240
           E S      +    + Q  A      + +L   L              + +  +  K   
Sbjct: 126 EPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNK--AAVMVHQLSKKEAS 183

Query: 241 CRSRCLSLQVLKLVVDALAHDSS-DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR 299
             +   S Q++  +V  + + +  +        L ++S   + L A        +  LV 
Sbjct: 184 RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA--IFKSGGIPALVN 241

Query: 300 LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR 359
           +L     +V   A+  + N+++     +      GG++ +V L    +          L+
Sbjct: 242 MLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301

Query: 360 NLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAED 419
            L +  ++     +      +L+  +       +      +++ L     N       E 
Sbjct: 302 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA--IVEA 359

Query: 420 GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF 479
           G +  A+G  L       +    ++ L N++                         +++ 
Sbjct: 360 GGM-QALGLHLT-DPSQRLVQNCLWTLRNLSDAATKQ----------EGMEGLLGTLVQL 407

Query: 480 LQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKT 539
           L S+D  + T A   + NLTC     +    + +   G +  +   V        +    
Sbjct: 408 LGSDDINVVTCAAGILSNLTC----NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 463

Query: 540 AL 541
             
Sbjct: 464 IC 465

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 81.6 bits (201), Expect = 2e-16
 Identities = 60/428 (14%), Positives = 120/428 (28%), Gaps = 47/428 (10%)

Query: 3   LLKS-YMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIIS 61
           LL    ++ +      L+++       K   L     + L++++   +        S + 
Sbjct: 284 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 343

Query: 62  HSCKTSLEQKLLF-DAGVLKRLTSLLG-GSLIQRDASLESIATIFKNNPEVVSQFVGPDT 119
                    K    +AG ++ L   L   S       L ++  +     +          
Sbjct: 344 KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL--- 400

Query: 120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL---DDP 176
              L  +++++          A+  L  +   +      V  +   I  L+  +    D 
Sbjct: 401 ---LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV-CQVGGIEALVRTVLRAGDR 456

Query: 177 GRVGDEASFAFSSLIA---EKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALAD 233
             + + A  A   L +   + E  Q       G+  +   L   S  P       + L  
Sbjct: 457 EDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA--TVGLIR 514

Query: 234 MCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRS----------------------AACM 271
             +      +       +  +V  L     D +                       A   
Sbjct: 515 NLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTG 574

Query: 272 CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFI 331
            L  ++R I N           +   V+LL      +Q  A G +  +  D         
Sbjct: 575 ALHILARDIHNRIV--IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIE 631

Query: 332 RLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP 391
             G    L +L  S +  +   A   L     ++EDK  ++    L+  L +SL      
Sbjct: 632 AEGATAPLTELLHSRNEGVATYAAAVLFR---MSEDK-PQDYKKRLSVELTSSLFRTEPM 687

Query: 392 SVQEQALA 399
           +  E    
Sbjct: 688 TWNETGDL 695

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 81.2 bits (200), Expect = 3e-16
 Identities = 41/295 (13%), Positives = 93/295 (31%), Gaps = 19/295 (6%)

Query: 250 VLKLVVDALAHDSSDVRSAA--CMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA 307
           +        +   ++V+  A     L+    ++ N    + +    +  L +LL+D    
Sbjct: 106 MQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQV 165

Query: 308 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQ-LSKSMDSTIRLNALRALRNLIFLAE 366
           V   A   +  +     +R +       V  +V+ +  + D          L NL     
Sbjct: 166 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS--HH 223

Query: 367 DKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAV 426
            +    IF       L +++  P  SV   A+  + NL+  +  +   +    G+    +
Sbjct: 224 REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGL--QKM 281

Query: 427 GRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSR 486
              L   +  +        L  +A G +  K  ++     +A       ++  +++    
Sbjct: 282 VALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQA-------LVNIMRTYTYE 333

Query: 487 LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTAL 541
                   VL +    S         + +AG +  +   + DP   +       L
Sbjct: 334 KLLWTTSRVLKVLSVCSSNKP----AIVEAGGMQALGLHLTDPSQRLVQNCLWTL 384

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 62.7 bits (152), Expect = 2e-10
 Identities = 53/344 (15%), Positives = 100/344 (29%), Gaps = 31/344 (9%)

Query: 38  MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG-GSLIQRDAS 96
           M+ L   L + S+ +       + +        K     G+L  L  LLG   +     +
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCA 419

Query: 97  LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLAS-LCLIVIRNASPCY 155
              ++ +  NN +             L   +    DR   T      L  +  R+     
Sbjct: 420 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEM 479

Query: 156 LQDVGIKTKLINNLLELLDDPGRVGD-EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHL 214
            Q+       +  +++LL  P      +A+      +A          E   + +L   L
Sbjct: 480 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 539

Query: 215 QKGSLHPRRF--------------------EGILLALADMCSKLECCRSRCLSLQVLKLV 254
            +     +R                     E    AL  +   +   R     L  + L 
Sbjct: 540 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHN-RIVIRGLNTIPLF 598

Query: 255 VDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALG 314
           V  L     +++  A   L  +++  +   A     E    PL  LL   +  V   A  
Sbjct: 599 VQLLYSPIENIQRVAAGVLCELAQDKEAAEA--IEAEGATAPLTELLHSRNEGVATYAAA 656

Query: 315 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL 358
            +  +  D   +   + +   V+L   L ++   T        L
Sbjct: 657 VLFRMSED---KPQDYKKRLSVELTSSLFRTEPMTWNETGDLGL 697

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  100 bits (250), Expect = 2e-22
 Identities = 69/532 (12%), Positives = 166/532 (31%), Gaps = 49/532 (9%)

Query: 41  LLSLLNNESENVSGLGASIISH-SCKTSLEQKLLFDAGVLKRLTSLLGGS---LIQRDAS 96
           L  LLN+E + V    A ++   S K +    ++    ++  +   +  +      R  +
Sbjct: 19  LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 78

Query: 97  --LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC 154
             L +++   +    +            +  +++++          A   L  +      
Sbjct: 79  GTLHNLSHHREGLLAIFK-------SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 131

Query: 155 YLQDVGIKTKLINNLLELLDDPG-RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNH 213
               V      +  ++ LL+    +     +     L    ++ + +     G   L N 
Sbjct: 132 AKMAV-RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 190

Query: 214 LQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCL 273
           ++  +            L  +       +   +    ++ +   L   S  +       L
Sbjct: 191 MRTYTYEKLL-WTTSRVLKVLSVCSSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 248

Query: 274 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL 333
           R++S +           E ++  LV+LL      V   A G +SN+  +    +    ++
Sbjct: 249 RNLSDAATKQEG----MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 304

Query: 334 GGVKLLVQL--SKSMDSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDP 389
           GG++ LV+          I   A+ ALR+L    ++    +  + +     ++  L+  P
Sbjct: 305 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 364

Query: 390 EP-SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGN 448
               + +  + L+RNL     N       E G I   V  QL + +  + + +       
Sbjct: 365 SHWPLIKATVGLIRNLALCPANHAP--LREQGAIPRLV--QLLVRAHQDTQRRTSMGGTQ 420

Query: 449 VATGKESHKEAVMDQ-------LLLRAENKAQ-------SCIIKFLQSNDSRLRTAAVWA 494
               +    E +++        L     N+            ++ L S    ++  A   
Sbjct: 421 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 480

Query: 495 VLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 546
           +  L              +   G  + +  +++     V       L + + 
Sbjct: 481 LCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 527

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 96.2 bits (239), Expect = 4e-21
 Identities = 46/298 (15%), Positives = 102/298 (34%), Gaps = 23/298 (7%)

Query: 246 LSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIP-LVRLLDDT 304
           L+ + +  +   L  +   V + A + +  +S+   +  A   M    ++  +VR + +T
Sbjct: 11  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA--IMRSPQMVSAIVRTMQNT 68

Query: 305 S-TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 363
           +         G + N+        +   + GG+  LV++  S   ++   A+  L NL+ 
Sbjct: 69  NDVETARCTAGTLHNLSHHREGLLA-IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL- 126

Query: 364 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIIL 423
           L ++  K  + +      + +L+              ++ L  G   S   I A  G   
Sbjct: 127 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP-- 184

Query: 424 DAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN 483
            A+   +R  +  ++      VL  ++    +    V        E      +   L   
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV--------EAGGMQALGLHLTDP 236

Query: 484 DSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTAL 541
             RL    +W + NL       S     +    G++  +  ++    ++V       L
Sbjct: 237 SQRLVQNCLWTLRNL-------SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 287

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 86.5 bits (214), Expect = 5e-18
 Identities = 52/366 (14%), Positives = 106/366 (28%), Gaps = 33/366 (9%)

Query: 38  MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG-GSLIQRDAS 96
           M+ L   L + S+ +       + +    +   K     G+L  L  LLG   +     +
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLRNLSDAA--TKQEGMEGLLGTLVQLLGSDDINVVTCA 283

Query: 97  LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRF-ARTRLLASLCLIVIRNASPCY 155
              ++ +  NN +             L   +    DR       + +L  +  R+     
Sbjct: 284 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM 343

Query: 156 LQDVGIKTKLINNLLELLDDPGRVGD-EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHL 214
            Q+       +  +++LL  P      +A+      +A          E   + +L   L
Sbjct: 344 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 403

Query: 215 QKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLR 274
            +                          ++  +                ++       L 
Sbjct: 404 VRAH----------------------QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH 441

Query: 275 SVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG 334
            ++R + N           +   V+LL      +Q  A G +  +  D           G
Sbjct: 442 ILARDVHNRIV--IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEG 498

Query: 335 GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQ 394
               L +L  S +  +   A   L  +        K+ + +ELT+SL  +   +P    +
Sbjct: 499 ATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRT---EPMAWNE 555

Query: 395 EQALAL 400
              L L
Sbjct: 556 TADLGL 561

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 83.1 bits (205), Expect = 7e-17
 Identities = 67/500 (13%), Positives = 157/500 (31%), Gaps = 52/500 (10%)

Query: 8   MEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTS 67
           +E     A +L  +   +        +   +  L+ +L +  ++V     + + +     
Sbjct: 71  VETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 129

Query: 68  LEQKLLF-DAGVLKRLTSLLG-GSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSC 125
              K+    AG L+++ +LL   ++     + + +  +   N E     +   +G     
Sbjct: 130 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL--ASG-GPQA 186

Query: 126 IIEIVKDRFARTRLLASLCLIVIRNASPC-YLQDVGIKTKLINNLLELLDDP-GRVGDEA 183
           ++ I++        L      V++  S C   +   ++   +  L   L DP  R+    
Sbjct: 187 LVNIMRT--YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 244

Query: 184 SFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRS 243
            +   +L       + +      +  L   L    ++          L+++       + 
Sbjct: 245 LWTLRNLSDAATKQEGME---GLLGTLVQLLGSDDINVV--TCAAGILSNLTCNNYKNKM 299

Query: 244 RCLSLQVLKLVVDAL--AHDSSDVRSAACMCLRSVSRSIKNLSAG--SFMNETIVIPLVR 299
               +  ++ +V  +  A D  D+   A   LR ++   +       +      +  +V+
Sbjct: 300 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK 359

Query: 300 LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR 359
           LL   S    + A   +   +       +     G +  LVQL        +        
Sbjct: 360 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 419

Query: 360 NLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAED 419
              F+   + +E   +E     L  L  D    +  + L  +   V              
Sbjct: 420 QQQFVEGVRMEE--IVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ------------- 464

Query: 420 GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF 479
            ++   +    R+A+           L  +A  KE   EA+           A + + + 
Sbjct: 465 -LLYSPIENIQRVAAGV---------LCELAQDKE-AAEAI-------EAEGATAPLTEL 506

Query: 480 LQSNDSRLRTAAVWAVLNLT 499
           L S +  + T A   +  ++
Sbjct: 507 LHSRNEGVATYAAAVLFRMS 526

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 78.8 bits (194), Expect = 1e-15
 Identities = 65/401 (16%), Positives = 132/401 (32%), Gaps = 45/401 (11%)

Query: 39  EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLF-DAGVLKRLTSLLGGS---LIQRD 94
           + +++LLN  +     +    +      + E KL+   +G  + L +++       +   
Sbjct: 143 QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 202

Query: 95  AS-LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASP 153
            S +  + ++  +N   + +  G      +  +   + D   R        L  + +A+ 
Sbjct: 203 TSRVLKVLSVCSSNKPAIVEAGG------MQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 256

Query: 154 CYLQDVGIKTKLINNLLELLDDPG-RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYN 212
                 G    L+  L++LL      V   A+   S+L       + +  +V G++ L  
Sbjct: 257 KQEGMEG----LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 312

Query: 213 HLQKGSLHPRRFEGILLALADMCSK---LECCRSRCLSLQVLKLVVDALAHDSSD-VRSA 268
            + +        E  + AL  + S+    E  ++       L +VV  L   S   +  A
Sbjct: 313 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 372

Query: 269 ACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR-- 326
               +R+++    N +      +  +  LV+LL       Q       +        R  
Sbjct: 373 TVGLIRNLALCPANHAP--LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 430

Query: 327 -------------------RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED 367
                              R     L  + L VQL  S    I+  A   L  L    + 
Sbjct: 431 EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA--QDK 488

Query: 368 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 408
           +  E I  E   + L  L+      V   A A++  + + +
Sbjct: 489 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 92.5 bits (230), Expect = 4e-20
 Identities = 46/298 (15%), Positives = 102/298 (34%), Gaps = 23/298 (7%)

Query: 246 LSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIP-LVRLLDDT 304
           L+ + +  +   L  +   V + A + +  +S+   +  A   M    ++  +VR + +T
Sbjct: 14  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA--IMRSPQMVSAIVRTMQNT 71

Query: 305 S-TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 363
           +         G + N+        +   + GG+  LV++  S   ++   A+  L NL+ 
Sbjct: 72  NDVETARCTAGTLHNLSHHREGLLA-IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL- 129

Query: 364 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIIL 423
           L ++  K  + +      + +L+              ++ L  G   S   I A  G   
Sbjct: 130 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP-- 187

Query: 424 DAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN 483
            A+   +R  +  ++      VL  ++    +    V        E      +   L   
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV--------EAGGMQALGLHLTDP 239

Query: 484 DSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTAL 541
             RL    +W + NL       S     +    G++  +  ++    ++V       L
Sbjct: 240 SQRLVQNCLWTLRNL-------SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 290

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 92.5 bits (230), Expect = 5e-20
 Identities = 42/276 (15%), Positives = 96/276 (34%), Gaps = 19/276 (6%)

Query: 230 ALADMCSKLECCRSRCLSLQVLKLVVDALAH-DSSDVRSAACMCLRSVSRSIKNLSAGSF 288
            +  +  K     +   S Q++  +V  + + +  +        L ++S   + L A   
Sbjct: 40  MVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA--I 97

Query: 289 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS 348
                +  LV++L     +V   A+  + N+++     +      GG++ +V L    + 
Sbjct: 98  FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 157

Query: 349 TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP-SVQEQALALVRNLVDG 407
                    L+ L +  ++  K  I        L +++       +      +++ L   
Sbjct: 158 KFLAITTDCLQILAYGNQE-SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216

Query: 408 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLR 467
             N       E G +  A+G  L   S+  +    ++ L N++                 
Sbjct: 217 SSNKPA--IVEAGGM-QALGLHLTDPSQ-RLVQNCLWTLRNLSDAATKQ----------E 262

Query: 468 AENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSS 503
                   +++ L S+D  + T A   + NLTC++ 
Sbjct: 263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 91.0 bits (226), Expect = 2e-19
 Identities = 70/529 (13%), Positives = 165/529 (31%), Gaps = 49/529 (9%)

Query: 41  LLSLLNNESENVSGLGASIISH-SCKTSLEQKLLFDAGVLKRLTSLLGGS---LIQRDAS 96
           L  LLN+E + V    A ++   S K +    ++    ++  +   +  +      R  +
Sbjct: 22  LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 81

Query: 97  --LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC 154
             L +++   +    +            +  +++++          A   L  +      
Sbjct: 82  GTLHNLSHHREGLLAIFKSGG-------IPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134

Query: 155 YLQDVGIKTKLINNLLELLDDPG-RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNH 213
               V      +  ++ LL+    +     +     L    ++ + +     G   L N 
Sbjct: 135 AKMAV-RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193

Query: 214 LQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCL 273
           ++  +            L  +       +   +    ++ +   L   S  +       L
Sbjct: 194 MRTYTYEKLL-WTTSRVLKVLSVCSSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251

Query: 274 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL 333
           R++S +           E ++  LV+LL      V   A G +SN+  +    +    ++
Sbjct: 252 RNLSDAATKQEG----MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 307

Query: 334 GGVKLLVQL--SKSMDSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDP 389
           GG++ LV+          I   A+ ALR+L    ++    +  + +     ++  L+  P
Sbjct: 308 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 367

Query: 390 EPSVQEQA-LALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGN 448
                 +A + L+RNL     N       E G I   V  QL + +  + + +       
Sbjct: 368 SHWPLIKATVGLIRNLALCPANHAP--LREQGAIPRLV--QLLVRAHQDTQRRTSMGGTQ 423

Query: 449 VATGKESHKEAVMD-------QLLLRAENKAQ-------SCIIKFLQSNDSRLRTAAVWA 494
               +    E +++        L     N+            ++ L S    ++  A   
Sbjct: 424 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 483

Query: 495 VLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQ 543
           +  L              +   G  + +  +++     V       L +
Sbjct: 484 LCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 81.4 bits (201), Expect = 2e-16
 Identities = 66/510 (12%), Positives = 154/510 (30%), Gaps = 72/510 (14%)

Query: 8   MEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISH-SCKT 66
           +E     A +L  +   +        +   +  L+ +L +  ++V     + + +     
Sbjct: 74  VETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132

Query: 67  SLEQKLLFDAGVLKRLTSLL--GGSLIQRDAS--LESIATIFKNNPEVVSQFVGPDTGRT 122
              +  +  AG L+++ +LL           +  L+ +A   + +  ++    G      
Sbjct: 133 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG------ 186

Query: 123 LSCIIEIVKDRFARTRLLASLCLIVIRNASPC-YLQDVGIKTKLINNLLELLDDP-GRVG 180
              ++ I++       L       V++  S C   +   ++   +  L   L DP  R+ 
Sbjct: 187 PQALVNIMRTYTYEKLLWT--TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 244

Query: 181 DEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC 240
               +   +L       + +      +  L   L                L+++      
Sbjct: 245 QNCLWTLRNLSDAATKQEGME---GLLGTLVQLLGSDD--INVVTCAAGILSNLTCNNYK 299

Query: 241 CRSRCLSLQVLKLVVDAL--AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETI----- 293
            +     +  ++ +V  +  A D  D+   A   LR       +L++     E       
Sbjct: 300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR-------HLTSRHQEAEMAQNAVR 352

Query: 294 ----VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST 349
               +  +V+LL   S    + A   +   +       +     G +  LVQL       
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 412

Query: 350 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRI 409
            +           F+   + +E   +E     L  L  D    +  + L  +   V    
Sbjct: 413 TQRRTSMGGTQQQFVEGVRMEE--IVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ--- 467

Query: 410 NSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAE 469
                      ++   +    R+A+           L  +A  KE+ +            
Sbjct: 468 -----------LLYSPIENIQRVAAGV---------LCELAQDKEAAEAIE--------A 499

Query: 470 NKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 499
             A + + + L S +  + T A   +  ++
Sbjct: 500 EGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 73.3 bits (180), Expect = 7e-14
 Identities = 48/359 (13%), Positives = 105/359 (29%), Gaps = 31/359 (8%)

Query: 6   SYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCK 65
           +Y +++   +R LK++     + K   ++   M+ L   L + S+ +       + +   
Sbjct: 198 TYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256

Query: 66  TSLEQKLLFDAGVLKRLTSLLG-GSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLS 124
            +   K     G+L  L  LLG   +     +   ++ +  NN +             L 
Sbjct: 257 AA--TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314

Query: 125 CIIEIVKDRF-ARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDE 182
             +    DR       + +L  +  R+      Q+       +  +++LL  P      +
Sbjct: 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374

Query: 183 ASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR 242
           A+      +A          E   + +L   L +                          
Sbjct: 375 ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH----------------------QD 412

Query: 243 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD 302
           ++  +                ++       L  ++R + N           +   V+LL 
Sbjct: 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV--IRGLNTIPLFVQLLY 470

Query: 303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL 361
                +Q  A G +  +  D           G    L +L  S +  +   A   L  +
Sbjct: 471 SPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 66.7 bits (163), Expect = 7e-12
 Identities = 25/227 (11%), Positives = 68/227 (29%), Gaps = 18/227 (7%)

Query: 315 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIF 374
           A+ N++     +    +    +  L +L    D  +   A   +  L      +      
Sbjct: 1   AVVNLI---NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 375 MELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS 434
            ++ ++++ ++    +          + NL   R   +     + G I  A+ + L    
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA--IFKSGGI-PALVKMLGSPV 114

Query: 435 KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWA 494
              +    +  L N+   +E  K AV               ++  L   + +        
Sbjct: 115 D-SVLFYAITTLHNLLLHQEGAKMAV-------RLAGGLQKMVALLNKTNVKFLAITTDC 166

Query: 495 VLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTAL 541
           +  L   +        + +  +G    + N++     +  L   + +
Sbjct: 167 LQILAYGNQESK----LIILASGGPQALVNIMRTYTYEKLLWTTSRV 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 87.3 bits (217), Expect = 7e-20
 Identities = 40/207 (19%), Positives = 80/207 (38%), Gaps = 17/207 (8%)

Query: 296 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNAL 355
            +V+ L+        +AL  +S I      +    I  G +  LVQL  S +  I   AL
Sbjct: 16  QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75

Query: 356 RALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 415
            AL N+     ++  + +        L  L+  P   + ++AL  + N+  G    ++ +
Sbjct: 76  WALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134

Query: 416 FAEDGI-ILDAVGRQLRIASKAEIEIQ--GMYVLGNVATGKESHKEAVMDQLLLRAENKA 472
                +  L      +++ S    +I    ++ L N+A+G    K+AV +   L      
Sbjct: 135 IDAGALPAL------VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEK---- 184

Query: 473 QSCIIKFLQSNDSRLRTAAVWAVLNLT 499
              + +     + +++  A  A+  L 
Sbjct: 185 ---LEQLQSHENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 14/178 (7%)

Query: 250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVI------PLVRLLDD 303
            L  +V  L         +A   L         +++G       VI       LV+LL  
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLS-------QIASGGNEQIQAVIDAGALPALVQLLSS 65

Query: 304 TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 363
            +  +   AL A+SNI      +    I  G +  LVQL  S +  I   AL AL N+  
Sbjct: 66  PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 125

Query: 364 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI 421
              +   + +        L  L+  P   + ++AL  + N+  G     + +     +
Sbjct: 126 GGNE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 76.5 bits (189), Expect = 3e-16
 Identities = 38/161 (23%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVI------PLVRLLDD 303
            L  +V  L+  +  +   A   L        N+++G       VI       LV+LL  
Sbjct: 55  ALPALVQLLSSPNEQILQEALWALS-------NIASGGNEQIQAVIDAGALPALVQLLSS 107

Query: 304 TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 363
            +  +   AL A+SNI      +    I  G +  LVQL  S +  I   AL AL N+  
Sbjct: 108 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167

Query: 364 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 404
              ++ K+ +        L  L       +Q++A   +  L
Sbjct: 168 GGNEQ-KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 39/211 (18%), Positives = 90/211 (42%), Gaps = 15/211 (7%)

Query: 334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSV 393
             +  +VQ   S D     +ALR L  +     ++  + +        L  L+  P   +
Sbjct: 12  SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQ-IQAVIDAGALPALVQLLSSPNEQI 70

Query: 394 QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK 453
            ++AL  + N+  G    ++ +     +   A+ + L  +   +I  + ++ L N+A+G 
Sbjct: 71  LQEALWALSNIASGGNEQIQAVIDAGAL--PALVQLLS-SPNEQILQEALWALSNIASGG 127

Query: 454 ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKL 513
               +AV+D   L A       +++ L S + ++   A+WA+ N+      G + +   +
Sbjct: 128 NEQIQAVIDAGALPA-------LVQLLSSPNEQILQEALWALSNIAS----GGNEQKQAV 176

Query: 514 HDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 544
            +AG +  ++ + +     ++   + ALE+ 
Sbjct: 177 KEAGALEKLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 38/203 (18%), Positives = 73/203 (35%), Gaps = 16/203 (7%)

Query: 166 INNLLELLDDPGR-VGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRF 224
           +  +++ L+ P +     A    S + +   +  +   +   +  L   L   +      
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL-- 71

Query: 225 EGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS 284
           +  L AL+++ S         +    L  +V  L+  +  +   A   L        N++
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS-------NIA 124

Query: 285 AGSFMNETIVI------PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKL 338
           +G       VI       LV+LL   +  +   AL A+SNI      ++      G ++ 
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEK 184

Query: 339 LVQLSKSMDSTIRLNALRALRNL 361
           L QL    +  I+  A  AL  L
Sbjct: 185 LEQLQSHENEKIQKEAQEALEKL 207

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 89.6 bits (222), Expect = 3e-19
 Identities = 60/349 (17%), Positives = 124/349 (35%), Gaps = 32/349 (9%)

Query: 213 HLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQV-LKLVVDALAHDSSDVRSAACM 271
           H Q      RR   +L  L  + +  E C     + +  +    + +          A  
Sbjct: 111 HSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVC 170

Query: 272 CLRSVSRSIKNLSAGSFMNETIVIPLVRLL-----------DDTSTAVQVAALGAISNIV 320
            L  +S   ++  A        +  +  LL           D  S  ++  A  A++N+ 
Sbjct: 171 VLMKLSFDEEHRHA--MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228

Query: 321 VDFTTRRSTFIRL-GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA 379
                 ++T   + G ++ LV   KS    ++      LRNL + A+   K+ +    + 
Sbjct: 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 288

Query: 380 SLLASLICDPE-PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI 438
             L     + +  S  +  L+ + NL      +   I A DG +   VG     +    +
Sbjct: 289 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 348

Query: 439 EIQG-----MYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVW 493
            I       +  + ++    E H++ + +   L+        +++ L+S+   + + A  
Sbjct: 349 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQT-------LLQHLKSHSLTIVSNACG 401

Query: 494 AVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE 542
            + NL+  +          L D G VS +KN+++     + +    AL 
Sbjct: 402 TLWNLSARNPKDQ----EALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 446

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 78.1 bits (192), Expect = 1e-15
 Identities = 45/259 (17%), Positives = 85/259 (32%), Gaps = 31/259 (11%)

Query: 260 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVI-------PLVRLLDDTSTAVQVAA 312
           H S  +R  A M L        NL+ G   N+  +         LV  L   S  +Q   
Sbjct: 211 HYSITLRRYAGMALT-------NLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVI 263

Query: 313 LGAISNIVVDFTTR-RSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDK-- 368
              + N+        + T   +G VK L++   +    +   + L AL NL     +   
Sbjct: 264 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323

Query: 369 --CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEY--IFAEDGIILD 424
             C  +  +      L         ++ E    ++RN+      + ++  I  E+  +  
Sbjct: 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT 383

Query: 425 AVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSND 484
            +  Q   +    I       L N++      +EA+        +  A S +   + S  
Sbjct: 384 LL--QHLKSHSLTIVSNACGTLWNLSARNPKDQEAL-------WDMGAVSMLKNLIHSKH 434

Query: 485 SRLRTAAVWAVLNLTCSSS 503
             +   +  A+ NL  +  
Sbjct: 435 KMIAMGSAAALRNLMANRP 453

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 76.9 bits (189), Expect = 3e-15
 Identities = 58/406 (14%), Positives = 121/406 (29%), Gaps = 33/406 (8%)

Query: 37  NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDAS 96
            +E + SLL+    +     +  +     +      +  +G L  L  LL G+       
Sbjct: 30  KVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLL 89

Query: 97  LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLI-VIRNASPCY 155
             S     + + E  ++         L  II    D     R +  L L+  IR      
Sbjct: 90  GNS-----RGSKEARARAS-----AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETC 139

Query: 156 LQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQ 215
            +        ++     +  P       +      ++  E+ +    E+ G+  +   LQ
Sbjct: 140 WEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQ 199

Query: 216 KGSLHPRRFE------------GILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS 263
                                   L  L      +    + C     ++ +V  L  +S 
Sbjct: 200 VDCEMYGLTNDHYSITLRRYAGMALTNLT--FGDVANKATLCSMKGCMRALVAQLKSESE 257

Query: 264 DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTST-AVQVAALGAISNIVVD 322
           D++      LR++S      S  +      V  L+    +    +   + L A+ N+   
Sbjct: 258 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 317

Query: 323 FTTRRSTFIRLGG-----VKLLVQLSKSMDSTIRLNALRALRNLIFLA--EDKCKEEIFM 375
            T  ++    + G     V  L   S++    I  +    LRN+  L    +  ++ +  
Sbjct: 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 377

Query: 376 ELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI 421
                 L   +     ++   A   + NL        E ++    +
Sbjct: 378 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAV 423

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 68.1 bits (166), Expect = 2e-12
 Identities = 43/220 (19%), Positives = 73/220 (33%), Gaps = 20/220 (9%)

Query: 166 INNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAF-EVNGVDKLYNHLQKGSLHPRR 223
           +  L+  L      +    +    +L    +   K    EV  V  L     +       
Sbjct: 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304

Query: 224 FE--GILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS----DVRSAACMCLRSVS 277
                 L  L+  C+  E     C     L  +V  L + S      +  +    LR+VS
Sbjct: 305 KSVLSALWNLSAHCT--ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362

Query: 278 RSIKNLSAGSFMNETIVI------PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFI 331
               +L A +  +  I+        L++ L   S  +   A G + N+       +    
Sbjct: 363 ----SLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW 418

Query: 332 RLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE 371
            +G V +L  L  S    I + +  ALRNL+     K K+
Sbjct: 419 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD 458

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 42/267 (15%), Positives = 75/267 (28%), Gaps = 43/267 (16%)

Query: 291 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD--- 347
            T V  +  LL    T  +      +  +     +  S   + G + LL+QL    D   
Sbjct: 28  GTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMR-QSGCLPLLIQLLHGNDKDS 86

Query: 348 ---------STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQAL 398
                       R  A  AL N+I    D                    D     + + L
Sbjct: 87  VLLGNSRGSKEARARASAALHNIIHSQPD--------------------DKRGRREIRVL 126

Query: 399 ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKE 458
            L+  +        E+  A +  + D     +  A         + VL  ++   E H+ 
Sbjct: 127 HLLEQIRAYCETCWEWQEAHEPGM-DQDKNPMP-APVEHQICPAVCVLMKLSF-DEEHRH 183

Query: 459 AVMD----QLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLH 514
           A+ +    Q +                     LR  A  A+ NLT         +     
Sbjct: 184 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA---NKATLCS 240

Query: 515 DAGIVSHVKNMVNDPCLDVKLRVKTAL 541
             G +  +   +     D++  + + L
Sbjct: 241 MKGCMRALVAQLKSESEDLQQVIASVL 267

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 88.4 bits (219), Expect = 3e-19
 Identities = 54/333 (16%), Positives = 117/333 (35%), Gaps = 36/333 (10%)

Query: 228 LLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGS 287
           + A  + C + +      +         + +          A   L  +S   ++  A  
Sbjct: 16  IRAYCETCWEWQEAHEPGMDQ-----DKNPMPAPVEHQICPAVCVLMKLSFDEEHRHA-- 68

Query: 288 FMNETIVIPLVRLL-----------DDTSTAVQVAALGAISNIVVDFTTRRSTFIRL-GG 335
                 +  +  LL           D  S  ++  A  A++N+       ++T   + G 
Sbjct: 69  MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128

Query: 336 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE-PSVQ 394
           ++ LV   KS    ++      LRNL + A+   K+ +    +   L     + +  S  
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 395 EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG-----MYVLGNV 449
           +  L+ + NL      +   I A DG +   VG     +    + I       +  + ++
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248

Query: 450 ATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGR 509
               E H++ + +   L+        +++ L+S+   + + A   + NL+      +   
Sbjct: 249 IATNEDHRQILRENNCLQ-------TLLQHLKSHSLTIVSNACGTLWNLSA----RNPKD 297

Query: 510 LVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE 542
              L D G VS +KN+++     + +    AL 
Sbjct: 298 QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 330

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 78.3 bits (193), Expect = 7e-16
 Identities = 45/259 (17%), Positives = 85/259 (32%), Gaps = 31/259 (11%)

Query: 260 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVI-------PLVRLLDDTSTAVQVAA 312
           H S  +R  A M L        NL+ G   N+  +         LV  L   S  +Q   
Sbjct: 95  HYSITLRRYAGMALT-------NLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVI 147

Query: 313 LGAISNIVVDFTTR-RSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDK-- 368
              + N+        + T   +G VK L++   +    +   + L AL NL     +   
Sbjct: 148 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 207

Query: 369 --CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEY--IFAEDGIILD 424
             C  +  +      L         ++ E    ++RN+      + ++  I  E+  +  
Sbjct: 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT 267

Query: 425 AVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSND 484
            +  Q   +    I       L N++      +EA+        +  A S +   + S  
Sbjct: 268 LL--QHLKSHSLTIVSNACGTLWNLSARNPKDQEAL-------WDMGAVSMLKNLIHSKH 318

Query: 485 SRLRTAAVWAVLNLTCSSS 503
             +   +  A+ NL  +  
Sbjct: 319 KMIAMGSAAALRNLMANRP 337

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 69.9 bits (171), Expect = 4e-13
 Identities = 42/228 (18%), Positives = 77/228 (33%), Gaps = 16/228 (7%)

Query: 166 INNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAF-EVNGVDKLYNHLQKGSLHPRR 223
           +  L+  L      +    +    +L    +   K    EV  V  L     +       
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 224 FE--GILLALADMCS--KLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRS 279
                 L  L+  C+  K + C        ++  +      ++  +  +    LR+VS  
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS-- 246

Query: 280 IKNLSAGSFMNETIVI------PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL 333
             +L A +  +  I+        L++ L   S  +   A G + N+       +     +
Sbjct: 247 --SLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM 304

Query: 334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASL 381
           G V +L  L  S    I + +  ALRNL+     K K+   M   +SL
Sbjct: 305 GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSL 352

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 82.6 bits (203), Expect = 1e-16
 Identities = 70/550 (12%), Positives = 166/550 (30%), Gaps = 35/550 (6%)

Query: 3   LLKSYMEVVDAGARSLKMIYQSKM-APKYDFLQEENMEFLLSLLNNESENVSGLGASIIS 61
           LL   ME       ++  +    +        +E  ++ +L++   + E    +    + 
Sbjct: 256 LLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLI 315

Query: 62  HSCKTSLEQKLLFDAGV--LKRLTSLLGGSLIQRDA--SLESIATIFKNNPEVVSQFVGP 117
            +     + K L + GV  LKRL        I+  A   L  + +    +  +     G 
Sbjct: 316 AASSKKDKAKALCEQGVDILKRLYHS-KNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGA 374

Query: 118 DTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG 177
                 +C   ++K    +     +   +          + +      I+ L++L     
Sbjct: 375 ALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGN 434

Query: 178 -RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCS 236
                     F +L    E  + L   +        H+ +                D   
Sbjct: 435 QSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEE------------HELDDVD 482

Query: 237 KLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIP 296
            +    +   +  +   +      +S + +      L +V    +    G  + E  V  
Sbjct: 483 FINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKEL--RGKVVQEGGVKA 540

Query: 297 LVRLLDDTSTAVQVAALGAISNIVV--DFTTRRSTFIRLGGVKLLVQ-LSKSMDSTIRLN 353
           L+R+  + +   +  A  A++ I +  +     S    L  ++ L+  L +   +     
Sbjct: 541 LLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFE 600

Query: 354 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVE 413
           +L AL NL  + E   ++ I  E   S +   + +    +   A   + NLV        
Sbjct: 601 SLMALTNLASMNES-VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM 659

Query: 414 YIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ 473
           +    D +   A    L      E        L  + +      E ++            
Sbjct: 660 FEGNNDRVKFLA---LLCEDEDEETATACAGALAIITSVSVKCCEKILA------IASWL 710

Query: 474 SCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDV 533
             +   + +    ++   +  +LN+  ++    + +L +     ++S +  + +D     
Sbjct: 711 DILHTLIANPSPAVQHRGIVIILNM-INAGEEIAKKLFETDIMELLSGLGQLPDDTRAKA 769

Query: 534 KLRVKTALEQ 543
           +      L  
Sbjct: 770 REVATQCLAA 779

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 70.6 bits (172), Expect = 6e-13
 Identities = 47/305 (15%), Positives = 104/305 (34%), Gaps = 16/305 (5%)

Query: 71  KLLFDAGVLKRLTSLL-GGSLIQRDAS---LESIATIFKNNPEVVSQFVGPDTGRTLSCI 126
            +L + G+   L +L    S   ++     L ++  + +   +VV +            +
Sbjct: 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVK-------AL 541

Query: 127 IEIVKDRFARTRLLASLCLIVI-RNASPCYLQDVGIKTKLINNLLELL--DDPGRVGDEA 183
           + +  +   + +  A+  L  I    +P           +I  LL LL  D       E+
Sbjct: 542 LRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFES 601

Query: 184 SFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRS 243
             A ++L +  E +++   +  GV K+  +L +  L+  R       L ++    +  + 
Sbjct: 602 LMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTR--AAAQCLCNLVMSEDVIKM 659

Query: 244 RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD 303
              +   +K +      +  +  +A    L  ++              + +  L  L+ +
Sbjct: 660 FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN 719

Query: 304 TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 363
            S AVQ   +  I N++               ++LL  L +  D T       A + L  
Sbjct: 720 PSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAA 779

Query: 364 LAEDK 368
               +
Sbjct: 780 AERYR 784

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 71.9 bits (175), Expect = 2e-13
 Identities = 51/356 (14%), Positives = 111/356 (31%), Gaps = 30/356 (8%)

Query: 29  KYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG 88
           K      + +  L+ LL    +       +    +  +    K+      L  LT  +  
Sbjct: 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEV-- 183

Query: 89  SLIQRDASLESIATIFKNNPEVVSQFVGPDTG--RTLSCIIEIVKDRFARTRLLASLCLI 146
            +I             K         +    G  R +S      + +      L    + 
Sbjct: 184 -IIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIF 242

Query: 147 VIRNASPCYLQD-------VGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK 199
           +++        D       V +   L   +   +    R  + A    ++         +
Sbjct: 243 IVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYE 302

Query: 200 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCS----KLECCRSRCLSLQVLKLVV 255
           L F+   V    + L++    P   E    A+ ++C+         RS     + L  + 
Sbjct: 303 LLFQPEVVRIYISLLKESK-TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361

Query: 256 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT--------STA 307
           D L ++   V  AA   LR+++   +N      + +  +  LV+ L           S  
Sbjct: 362 DLLTNEHERVVKAASGALRNLAVDARNKEL---IGKHAIPNLVKNLPGGQQNSSWNFSED 418

Query: 308 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN--ALRALRNL 361
             ++ L  I+ ++ +            G++ LV ++KS + + +    A   L+ +
Sbjct: 419 TVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 69.2 bits (168), Expect = 1e-12
 Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 1/133 (0%)

Query: 273 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR 332
           L S+    K         +  +  ++ +L     AV+  A   + ++       ++   +
Sbjct: 29  LASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRK 88

Query: 333 LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-PEP 391
           L G+ +LV L       + L A  AL+N+ F  +   K  I        L  L+    + 
Sbjct: 89  LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDM 148

Query: 392 SVQEQALALVRNL 404
            + E     + NL
Sbjct: 149 DLTEVITGTLWNL 161

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 64.2 bits (155), Expect = 6e-11
 Identities = 49/324 (15%), Positives = 102/324 (31%), Gaps = 25/324 (7%)

Query: 230 ALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFM 289
            L  +C + +  ++    L+ + ++V  L H   +V   AC  L+++S      +  +  
Sbjct: 71  YLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIK 130

Query: 290 NETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS 348
           N   V  LVRLL       +     G + N+    + +    I    +  L        S
Sbjct: 131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME--IVDHALHALTDEVIIPHS 188

Query: 349 TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQE--QALALVRNLVD 406
                     +      E        +  TA  L ++  +   + ++  +   LV  L+ 
Sbjct: 189 GWEREPNEDCKPRHIEWES------VLTNTAGCLRNVSSERSEARRKLRECDGLVDALIF 242

Query: 407 GRINSVEYIFAEDGIILDAVGRQLRIASKAEIEI--------QGMYVLGNVATGKESHKE 458
                +    ++  ++ + V     ++ +   EI            V  N  T      E
Sbjct: 243 IVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYE 302

Query: 459 AVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGI 518
            +    ++R        I    +S    +  A+  A+ NL              L     
Sbjct: 303 LLFQPEVVRI------YISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKA 356

Query: 519 VSHVKNMVNDPCLDVKLRVKTALE 542
           +S + +++ +    V      AL 
Sbjct: 357 LSAIADLLTNEHERVVKAASGALR 380

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 42.6 bits (99), Expect = 3e-04
 Identities = 64/421 (15%), Positives = 130/421 (30%), Gaps = 54/421 (12%)

Query: 1   MPLLKSYMEVVDAGARSLKMIYQS--KMAPKYDFLQEENMEFLLSLLNNESENVSGLGAS 58
           +P  + Y   +    R       S  K  P     ++  +  ++++L    + V    A+
Sbjct: 11  VPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAA 70

Query: 59  IISHSCKTSLEQK-LLFDAGVLKRLTSLL--GGSLIQRDAS--LESIATIFKNNPEVVSQ 113
            + H C  + + K  +     +  L  LL      +   A   L++I+  F  + +    
Sbjct: 71  YLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNIS--FGRDQDNKIA 128

Query: 114 FVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL 173
               D    L  ++   +D      +        + N S      + I    ++ L + +
Sbjct: 129 IKNCDGVPALVRLLRKARDMDLTEVITG-----TLWNLSSHDSIKMEIVDHALHALTDEV 183

Query: 174 DDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALAD 233
             P   G E            E    L      +  + +   +     R  +G++ AL  
Sbjct: 184 IIP-HSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDAL-- 240

Query: 234 MCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETI 293
                         + +++  +     DS  V +  C+        ++NLS         
Sbjct: 241 --------------IFIVQAEIGQKDSDSKLVENCVCL--------LRNLSYQ------- 271

Query: 294 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL-SKSMDSTIRL 352
               V      +   Q AA    +N             +   V++ + L  +S    I  
Sbjct: 272 ----VHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327

Query: 353 NALRALRNLIFLAEDK---CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRI 409
            +  A++NL           +  +  E   S +A L+ +    V + A   +RNL     
Sbjct: 328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR 387

Query: 410 N 410
           N
Sbjct: 388 N 388

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 69.9 bits (170), Expect = 7e-13
 Identities = 36/217 (16%), Positives = 69/217 (31%), Gaps = 19/217 (8%)

Query: 296 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNAL 355
             V+ L       Q      I +      + +    +LGG+  LV L +S +  ++  A 
Sbjct: 6   KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65

Query: 356 RALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS---- 411
            ALRNL+F +     E          ++ L       +Q+Q   L+ NL           
Sbjct: 66  GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI 125

Query: 412 -------VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQL 464
                   + +        D      R     E+       L N+++     +       
Sbjct: 126 ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ------- 178

Query: 465 LLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS 501
            +R  +     ++ ++Q+  +  R     +V N  C 
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDK-SVENCMCV 214

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 62.9 bits (152), Expect = 1e-10
 Identities = 53/338 (15%), Positives = 100/338 (29%), Gaps = 31/338 (9%)

Query: 230 ALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVS-RSIKNLSAGSF 288
            +   C + E  + +   L  +  +VD L   + +V+ AA   LR++  RS  N      
Sbjct: 25  YIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE--T 82

Query: 289 MNETIVIPLVRLLDDTSTA-VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL----- 342
             +  +   V LL  T  A +Q    G + N+      +    +    + +L        
Sbjct: 83  RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE--LIADALPVLADRVIIPF 140

Query: 343 -----------SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP 391
                       + +D  +  NA   LRNL      +     +  L  SL+A +      
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYV--QNCV 198

Query: 392 SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEI-----QGMYVL 446
           +        V N +    N    + AE       +    R A   +        +   ++
Sbjct: 199 AASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMM 258

Query: 447 GNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL-RTAAVWAVLNLT-CSSSP 504
            N        +E           + A    +  +  +       A   A+ NLT      
Sbjct: 259 NNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318

Query: 505 GSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE 542
            S    +       +  +  ++     DV     + L 
Sbjct: 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS 356

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 61.8 bits (149), Expect = 2e-10
 Identities = 52/424 (12%), Positives = 127/424 (29%), Gaps = 44/424 (10%)

Query: 37  NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQK-LLFDAGVLKRLTSLLG-GSLIQRD 94
            +   +  L+++ E    +GA  I H+C      K  ++  G + +L  LL   +   + 
Sbjct: 3   TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 95  ASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC 154
           A+  ++  +   +    ++            +  + +   A  +   +  L    N S  
Sbjct: 63  AAAGALRNLVFRSTT--NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLL---WNLSST 117

Query: 155 YLQDVGIKTKLINNLLELLDDPGRVGDE-----------------ASFAFSSLIAEKEDM 197
                 +    +  L + +  P     +                 A+    +L +     
Sbjct: 118 DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGR 177

Query: 198 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDA 257
           Q +      +D L  ++Q      R  +  +     +   L       +  +  +L  +A
Sbjct: 178 QTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237

Query: 258 LAHDSSDVRSAACMCLRSVSRSIKNLSA-----------GSFMNETIVIPLVRLLDDTST 306
               +    +           +                 G   +   +   + L+  +  
Sbjct: 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK 297

Query: 307 -AVQVAALGAISNIVVD-----FTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN 360
            A   A  GA+ N+            +   ++  G+  + +L +S +S +  +    L N
Sbjct: 298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSN 357

Query: 361 LIFLAEDKCK--EEIFMELTASLL-ASLICDPEPSVQEQALALVRNLVDGRINSVEYIFA 417
           +            ++F E+T  L   +        +   A   VRNL+  +    +  F+
Sbjct: 358 MSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFS 417

Query: 418 EDGI 421
              +
Sbjct: 418 SSML 421

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 54.5 bits (130), Expect = 5e-08
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 10/140 (7%)

Query: 229 LALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF 288
           L  +         +   L  + L  +   L   +SDV  +    L ++SR          
Sbjct: 311 LTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRV--- 367

Query: 289 MNETIVIPLVRLLDDT------STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL 342
           M   +   + RLL         S  +  +A   + N++         +     +  ++ L
Sbjct: 368 MGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINL 427

Query: 343 SKSMDS-TIRLNALRALRNL 361
            +S  S      A   L ++
Sbjct: 428 CRSSASPKAAEAARLLLSDM 447

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 53.7 bits (128), Expect = 8e-08
 Identities = 32/175 (18%), Positives = 67/175 (38%), Gaps = 10/175 (5%)

Query: 336 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQE 395
           +   VQ   S D   +      +++  F  ++  K++++       L  L+  P  +VQ+
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQ-DESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 396 QALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES 455
            A   +RNLV     +      ++GI        LR    AEI+ Q   +L N+++  E 
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIR--EAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 456 HK-------EAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSS 503
            +         + D++++              +  D  +   A   + NL+ + +
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADA 175

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 50.6 bits (120), Expect = 8e-07
 Identities = 46/365 (12%), Positives = 109/365 (29%), Gaps = 40/365 (10%)

Query: 169 LLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRF-EG 226
            ++ L     +     ++       + E  ++  +++ G+ KL + L+  + + ++   G
Sbjct: 7   AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAG 66

Query: 227 IL--LALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS 284
            L  L      +KLE  R       + + V       +++++      L ++S + +   
Sbjct: 67  ALRNLVFRSTTNKLETRRQNG----IREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 285 AGSFMNETIVIPLVRLL----------------DDTSTAVQVAALGAISNIVVDFTTRRS 328
               +    +  L   +                +     V   A G + N+      R++
Sbjct: 123 E---LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179

Query: 329 TFIRLGGVKLLVQL------SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 382
                G +  L+        +   D     N +  L NL +  + +           +  
Sbjct: 180 MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239

Query: 383 ASLI-----CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE 437
           A        C    S +         L +   N     +      +      +  + K  
Sbjct: 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299

Query: 438 IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLN 497
                   L N+   K      +   + L+   K    I + LQS +S +  +    + N
Sbjct: 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKE--KGLPQIARLLQSGNSDVVRSGASLLSN 357

Query: 498 LTCSS 502
           ++   
Sbjct: 358 MSRHP 362

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 48.3 bits (114), Expect = 5e-06
 Identities = 57/442 (12%), Positives = 139/442 (31%), Gaps = 44/442 (9%)

Query: 3   LLKS-YMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIIS 61
            L S   +    GA  ++       + K    Q   +  L+ LL + ++NV    A  + 
Sbjct: 10  YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALR 69

Query: 62  H-SCKTSLEQKLLFDAGVLKRLTSLLGGS---LIQRDAS--LESIATIFKNNPEVVSQFV 115
           +   +++  +        ++   SLL  +    IQ+  +  L ++++  +   E+++  +
Sbjct: 70  NLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADAL 129

Query: 116 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC--YL-------QDVGIKTKLI 166
                R +             +R +      V  NA+ C   L       Q +   + LI
Sbjct: 130 PVLADRVIIPFSGWCDGNSNMSREVVDP--EVFFNATGCLRNLSSADAGRQTMRNYSGLI 187

Query: 167 NNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRR--- 223
           ++L+  + +          +  + +    ++                    + +  +   
Sbjct: 188 DSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSST 247

Query: 224 -----------FEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMC 272
                             L +  +  +       S  +   +             A    
Sbjct: 248 GCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGA 307

Query: 273 LRSVSRSIKNLSAGS----FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS 328
           L++++ S   +S+G      + E  +  + RLL   ++ V  +    +SN+       R 
Sbjct: 308 LQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRV 367

Query: 329 TFIRLGGVKLLVQL------SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 382
             +       + +L      + S    I  +A   +RNL+       K+     +  +++
Sbjct: 368 --MGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNII 425

Query: 383 ASLICDPEPSVQEQALALVRNL 404
                   P   E A  L+ ++
Sbjct: 426 NLCRSSASPKAAEAARLLLSDM 447

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 3e-10
 Identities = 91/631 (14%), Positives = 181/631 (28%), Gaps = 212/631 (33%)

Query: 12  DAGARSLKMIYQSKMAPKYDFLQE-------------ENMEFLLSLLNNESE-----NVS 53
                 ++   +  +   Y FL                        L N+++     NVS
Sbjct: 73  SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132

Query: 54  ----------GL-----GASIISH----SCKTSLEQKLLFDAGVLKRLT------SLLGG 88
                      L       +++      S KT +   +     V  ++       +L   
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL--K 190

Query: 89  SLIQRDASLESIATIF-KNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASL---- 143
           +    +  LE +  +  + +P   S+    D    +   I  ++      RLL S     
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSR---SDHSSNIKLRIHSIQAEL--RRLLKSKPYEN 245

Query: 144 CLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSS--LI--AEKEDMQK 199
           CL+V+ N     +Q+     K  N                +F  S   L+    K+    
Sbjct: 246 CLLVLLN-----VQN----AKAWN----------------AFNLSCKILLTTRFKQVTDF 280

Query: 200 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADM-CSKL--ECCRSRCLSLQVLKLVVD 256
           L+        L +H     L P   + +LL   D     L  E       + + L ++  
Sbjct: 281 LSAATTTHISL-DHHSMT-LTPDEVKSLLLKYLDCRPQDLPREVLT---TNPRRLSIIA- 334

Query: 257 ALAHDSSD----VRSAACMCL-RSVSRSIKNLSAGSF---------MNETIVIP---LVR 299
               D        +   C  L   +  S+  L    +            +  IP   L  
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394

Query: 300 L-LDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL 358
           +  D   + V          +VV+   + S         L+ +  K  +STI + ++   
Sbjct: 395 IWFDVIKSDVM---------VVVNKLHKYS---------LVEKQPK--ESTISIPSI--- 431

Query: 359 RNLIFLAEDKCKEEIFMELTASLLAS--LICDPEPSVQEQALALVRNLVDGRINSVEYIF 416
                  E K K E    L  S++    +    +         L+   +D       Y +
Sbjct: 432 -----YLELKVKLENEYALHRSIVDHYNIPKTFDSD------DLIPPYLDQ------YFY 474

Query: 417 AEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCI 476
           +        +G  L+     E                   +  +   + L          
Sbjct: 475 SH-------IGHHLKNIEHPE-------------------RMTLFRMVFLD--------- 499

Query: 477 IKFLQSNDSRLR-TAAVW----AVLNLT----------CSSSPGSSGRLVKLHDAGIVSH 521
            +FL+    ++R  +  W    ++LN            C + P     +  + D  +   
Sbjct: 500 FRFLE---QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF-LPKI 555

Query: 522 VKNMVNDPCLDVKLRVKTALEQFNS--FDDS 550
            +N++     D+   ++ AL   +   F+++
Sbjct: 556 EENLICSKYTDL---LRIALMAEDEAIFEEA 583

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 61.2 bits (148), Expect = 4e-10
 Identities = 57/423 (13%), Positives = 135/423 (31%), Gaps = 47/423 (11%)

Query: 123 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG-RVGD 181
           +     +  D     RLLA    + I       L    ++  ++  L +  +D   RV  
Sbjct: 205 IPMFSNLASDEQDSVRLLAVEACVNIAQ----LLPQEDLEALVMPTLRQAAEDKSWRVRY 260

Query: 182 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL-EC 240
             +  F+ L             V     L                    + + C  L   
Sbjct: 261 MVADKFTELQKAVGPEITKTDLVPAFQNLMKDC-----EAEVRAAASHKVKEFCENLSAD 315

Query: 241 CRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL 300
           CR   +  Q+L  + + ++  +  V+SA    +  +S  +          E ++   +  
Sbjct: 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK----DNTIEHLLPLFLAQ 371

Query: 301 LDDTSTAVQVAALGAISNIVVDF-TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR 359
           L D    V++  +  +  +       + S  +    +  +V+L++     +RL  +  + 
Sbjct: 372 LKDECPEVRLNIISNLDCVNEVIGIRQLSQSL----LPAIVELAEDAKWRVRLAIIEYMP 427

Query: 360 NLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAED 419
            L      +   E F E   SL  + + D   +++E A + ++ LV       E+  A  
Sbjct: 428 LLA----GQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV--EKFGKEWAHAT- 480

Query: 420 GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF 479
             I+  V             +  ++ +  ++  +   ++     +L          +++ 
Sbjct: 481 --IIPKVLAMSG-DPNYLHRMTTLFCINVLS--EVCGQDITTKHML--------PTVLRM 527

Query: 480 LQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKT 539
                + +R     ++  +                 + +   ++ +  D  +DVK   + 
Sbjct: 528 AGDPVANVRFNVAKSLQKIGPILDN-------STLQSEVKPILEKLTQDQDVDVKYFAQE 580

Query: 540 ALE 542
           AL 
Sbjct: 581 ALT 583

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 58.5 bits (141), Expect = 3e-09
 Identities = 47/363 (12%), Positives = 116/363 (31%), Gaps = 31/363 (8%)

Query: 38  MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG-GSLIQRDAS 96
           M  L     ++S  V  + A   +   K    +  +    ++    +L+       R A+
Sbjct: 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAA 301

Query: 97  LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYL 156
              +    +N      + V     + L CI E+V D     +   +  ++ +       L
Sbjct: 302 SHKVKEFCENLSADCRENVIMS--QILPCIKELVSDANQHVKSALASVIMGL----SPIL 355

Query: 157 QDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQK 216
                   L+   L  L D     +      + +       + +         L   + +
Sbjct: 356 GKDNTIEHLLPLFLAQLKD-----ECPEVRLNIISNLDCVNEVIGIR-QLSQSLLPAIVE 409

Query: 217 G--SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLR 274
                  R    I+  +  +  +L          ++  L +  L      +R AA   L+
Sbjct: 410 LAEDAKWRVRLAIIEYMPLLAGQLG---VEFFDEKLNSLCMAWLVDHVYAIREAATSNLK 466

Query: 275 SVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG 334
            +           + + TI+  ++ +  D +   ++  L  I+ +        +T   L 
Sbjct: 467 KLVEKFGK----EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHML- 521

Query: 335 GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQ 394
               +++++    + +R N  ++L+ +  + ++   +         +L  L  D +  V+
Sbjct: 522 --PTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVK----PILEKLTQDQDVDVK 575

Query: 395 EQA 397
             A
Sbjct: 576 YFA 578

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 57.7 bits (139), Expect = 6e-09
 Identities = 59/381 (15%), Positives = 130/381 (34%), Gaps = 35/381 (9%)

Query: 31  DFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSL 90
           D ++ E +    +L ++E ++V  L      +  +      LL    +   +   L  + 
Sbjct: 198 DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ------LLPQEDLEALVMPTLRQAA 251

Query: 91  IQRDASLESIATIFKNNPEVVSQFVGPDTGRT--LSCIIEIVKDRFARTRLLASLCLIVI 148
              D S      +     E+     GP+  +T  +     ++KD  A  R  AS  +   
Sbjct: 252 --EDKSWRVRYMVADKFTELQKAV-GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 308

Query: 149 RNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSL--IAEKEDMQKLAFEVN 205
                   ++  I ++++  + EL+ D    V    +     L  I  K++  +    + 
Sbjct: 309 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL- 367

Query: 206 GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDV 265
                   L+      R    I+  L  +   +     R LS  +L  +V+        V
Sbjct: 368 ----FLAQLKDECPEVR--LNIISNLDCVNEVIG---IRQLSQSLLPAIVELAEDAKWRV 418

Query: 266 RSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT 325
           R A    +  ++  +       F +E +    +  L D   A++ AA   +  +V  F  
Sbjct: 419 RLAIIEYMPLLAGQL----GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF-- 472

Query: 326 RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL 385
               +     +  ++ +S   +   R+  L  +  L     + C ++I  +     +  +
Sbjct: 473 -GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS----EVCGQDITTKHMLPTVLRM 527

Query: 386 ICDPEPSVQEQALALVRNLVD 406
             DP  +V+      ++ +  
Sbjct: 528 AGDPVANVRFNVAKSLQKIGP 548

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 44/376 (11%), Positives = 105/376 (27%), Gaps = 35/376 (9%)

Query: 123 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDE 182
           L  +  +        R  A   L  I +          ++   +  +  L          
Sbjct: 89  LPPLESLATVEETVVRDKAVESLRAISHE----HSPSDLEAHFVPLVKRLAGGDWFTSRT 144

Query: 183 ASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR 242
           ++    S+   +      A        L +        P         L +    LE   
Sbjct: 145 SACGLFSVCYPRVSSAVKAELRQYFRNLCSDD-----TPMVRRAAASKLGEFAKVLE--- 196

Query: 243 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD 302
              +  +++ +  +  + +   VR  A     ++++ +        +   ++  L +  +
Sbjct: 197 LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAE 252

Query: 303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 362
           D S  V+       + +            +   V     L K  ++ +R  A   ++   
Sbjct: 253 DKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC 309

Query: 363 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGII 422
                 C+E + M      +  L+ D    V+    +++  L          I  +D  I
Sbjct: 310 ENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP--------ILGKDNTI 361

Query: 423 LDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS 482
              +   L        E++   +       +      +   LL          I++  + 
Sbjct: 362 EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLL--------PAIVELAED 413

Query: 483 NDSRLRTAAVWAVLNL 498
              R+R A +  +  L
Sbjct: 414 AKWRVRLAIIEYMPLL 429

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 60.6 bits (146), Expect = 1e-09
 Identities = 71/484 (14%), Positives = 152/484 (31%), Gaps = 78/484 (16%)

Query: 75  DAGVLKRLTSLLGGSL-----IQRDA--SLESIATIFKNNPEVVSQFVGPDTGRTLSCII 127
           D   L+++  LL  S      IQR     LE         P+  +          L  ++
Sbjct: 8   DEQGLQQILQLLKESQSPDTTIQRTVQQKLEQ----LNQYPDFNNY---------LIFVL 54

Query: 128 EIVKDRFARTRLLASLCLIVIRNASPCYLQ--DVGIKTKLINNLLELLDDPGRVGDEASF 185
             +K     TR L+ L L   +N    + Q    G+   + +  L  + D   +      
Sbjct: 55  TKLKSEDEPTRSLSGLIL---KNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVG 111

Query: 186 AFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCS----KLECC 241
              + IA K ++Q      + + KL + L     +    EG   AL  +C      L+  
Sbjct: 112 ILITTIASKGELQNWP---DLLPKLCSLLDSEDYNTC--EGAFGALQKICEDSAEILDSD 166

Query: 242 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL 301
                   ++   +    H S  +RS A  C+     S           ++ +  L  L 
Sbjct: 167 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI--DSFIENLFALA 224

Query: 302 DDTSTAVQVAALGAISNIV-VDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN 360
            D    V+     A+  ++ V           +  V+ ++Q ++  D  + L A      
Sbjct: 225 GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNI--VEYMLQRTQDQDENVALEACEFWLT 282

Query: 361 LIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDG 420
           L        ++ I  ++    L  LI      ++   + ++    D    S       D 
Sbjct: 283 L-------AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335

Query: 421 IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL 480
            +       L + +                     +++ ++  +L          + + L
Sbjct: 336 NLRKCSAAALDVLA-------------------NVYRDELLPHIL--------PLLKELL 368

Query: 481 QSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTA 540
             ++  ++ + +  +  +      G    L +     ++ H+   ++D    V+      
Sbjct: 369 FHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-----LIPHLIQCLSDKKALVRSITCWT 423

Query: 541 LEQF 544
           L ++
Sbjct: 424 LSRY 427

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 51.3 bits (122), Expect = 7e-07
 Identities = 46/378 (12%), Positives = 119/378 (31%), Gaps = 25/378 (6%)

Query: 41  LLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQ-RDASLES 99
            L    + S  +     + ++    +  +  +L     ++ L +L G    + R     +
Sbjct: 179 FLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRA 238

Query: 100 IATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDV 159
           +  + +   +     + P     +  +++  +D+     L A    + +     C    V
Sbjct: 239 LVMLLEVRMD----RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV 294

Query: 160 GIKTKLINNLLELL---------------DDPGRVGDEASFAFSSLIAEKEDMQKLAFEV 204
               KLI  L+  +                  G     + +      A   D+    +  
Sbjct: 295 RHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD 354

Query: 205 NGVDKLYNHLQK--GSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS 262
             +  +   L++          E  +L L  +           L  +++  ++  L+   
Sbjct: 355 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLSDKK 413

Query: 263 SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVD 322
           + VRS  C  L   +  + +    +++   ++  L++ + D++  VQ AA  A + +  +
Sbjct: 414 ALVRSITCWTLSRYAHWVVSQPPDTYLKP-LMTELLKRILDSNKRVQEAACSAFATLEEE 472

Query: 323 FTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 382
             T    ++    +  LV           L    A+  L         +  ++++    L
Sbjct: 473 ACTELVPYLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPL 531

Query: 383 ASLICDPEPSVQEQALAL 400
                  +   ++    L
Sbjct: 532 IQKWNMLKDEDKDLFPLL 549

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 56.5 bits (136), Expect = 3e-09
 Identities = 36/230 (15%), Positives = 78/230 (33%), Gaps = 23/230 (10%)

Query: 286 GSFMNETIVIP-LVRLL--DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL 342
           GS  +  + +   V +L  D    +   AA   I +     +  R    +L G+  L+QL
Sbjct: 1   GSNADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQL 60

Query: 343 SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-PEPSVQEQALALV 401
            K  +  ++     ALRNL+F  ++  K E+        L  ++    +   ++Q   L+
Sbjct: 61  LKVQNEDVQRAVCGALRNLVF-EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLL 119

Query: 402 RNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMY-----------VLGNVA 450
            NL          I      + + +        + +                   L N++
Sbjct: 120 WNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMS 179

Query: 451 TGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 500
           +     ++A      +R  +     ++ +++   +  +     A  N  C
Sbjct: 180 SAGADGRKA------MRRCDGLIDSLVHYVRGTIADYQPDDK-ATENCVC 222

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 37/227 (16%), Positives = 72/227 (31%), Gaps = 38/227 (16%)

Query: 207 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVR 266
           +++  + L+   + P R       +   C +    R R   L+ +  ++  L   + DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 267 SAACMCLRSVSRSIKNLSAGSFMNETIVI------PLVRLLDDT-STAVQVAALGAISNI 319
            A C  LR       NL      N+  V        L+++L  T     +    G + N+
Sbjct: 70  RAVCGALR-------NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL 122

Query: 320 VVDFTTRRSTFIRLGGVKLLVQL----------------SKSMDSTIRLNALRALRNLIF 363
             +   +    +    +  L +                 +  +D  I  N    LRN+  
Sbjct: 123 SSNDKLKNL--MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS 180

Query: 364 LAEDKCKEEIFMELTASLLASLI------CDPEPSVQEQALALVRNL 404
              D  K     +     L   +        P+    E  + ++ NL
Sbjct: 181 AGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNL 227

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 55.9 bits (134), Expect = 6e-09
 Identities = 32/242 (13%), Positives = 80/242 (33%), Gaps = 35/242 (14%)

Query: 257 ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAI 316
           ++  +  D+R A      +    ++ +   +  +E+++  L+ LLDD    V   A+  I
Sbjct: 2   SMEEEEFDIREAL-----ANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISII 56

Query: 317 SNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME 376
             I           ++    KL   L KS    +     +A   +     +  K  I   
Sbjct: 57  MVIAKTREDLYEPMLK----KLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI--- 109

Query: 377 LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA 436
               +L +     +   +      +  +       +  I  +   +L +  R+ ++ +  
Sbjct: 110 ---PVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTA-- 164

Query: 437 EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVL 496
                 +  +  +      +    + +++              L   D  +R +AV A++
Sbjct: 165 ------LNFIEAMGENSFKYVNPFLPRIINL------------LHDGDEIVRASAVEALV 206

Query: 497 NL 498
           +L
Sbjct: 207 HL 208

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 49/348 (14%), Positives = 108/348 (31%), Gaps = 26/348 (7%)

Query: 165 LINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKG--SLHPR 222
           ++ NLL LL       ++  +  S        +       + ++ +   +++   + + R
Sbjct: 325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWR 384

Query: 223 RFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN 282
             E  ++A   +    +  +      Q L  +++ +   S  V+     C+  ++ S+  
Sbjct: 385 NREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAE 444

Query: 283 LSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL 342
                     +V   +  L D    V       I N+V        + I      L+  L
Sbjct: 445 SIDPQQHLPGVVQACLIGLQDHP-KVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGL 503

Query: 343 SKSMDST-----IRLNALRALRNLIFLAEDKCKE--EIFMELTASLLASLICDPEPSVQE 395
             + +        R +A  AL  ++  A D   E            L   +   E  +  
Sbjct: 504 IGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTL 563

Query: 396 QALALVRNLVDGRINSVEYIFAEDG--------IILDAVGRQLRIASKAEIEIQGMYVLG 447
           +    ++ L    +  +  +  +          +++    R L     A IE    Y + 
Sbjct: 564 EDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS 623

Query: 448 NVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 495
            +A       E  ++             ++K L   DS +   AV  +
Sbjct: 624 ALAASLGKGFEKYLETFS--------PYLLKALNQVDSPVSITAVGFI 663

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 42.5 bits (99), Expect = 4e-04
 Identities = 24/163 (14%), Positives = 56/163 (34%), Gaps = 9/163 (5%)

Query: 249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 308
           Q+    + AL      + +AA   + ++              E + I +     +    V
Sbjct: 95  QIKTNALTALVSIEPRIANAAAQLIAAI---ADIELPHGAWPELMKIMVDNTGAEQPENV 151

Query: 309 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST-----IRLNALRALRNLIF 363
           + A+L A+  +      +    +      +L+ + +   ST     +RL AL AL + + 
Sbjct: 152 KRASLLALGYMCESADPQSQALVS-SSNNILIAIVQGAQSTETSKAVRLAALNALADSLI 210

Query: 364 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD 406
             ++  + E        ++       +  VQ  A   +  ++ 
Sbjct: 211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS 253

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 53/422 (12%), Positives = 136/422 (32%), Gaps = 35/422 (8%)

Query: 136 RTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAE-K 194
             ++ ++L L+   + +     ++   +++  N +     P       + A+ SL A  K
Sbjct: 309 DVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVK 368

Query: 195 EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLV 254
                +    +  + L   ++   +    + G+L+ +A++ +  E               
Sbjct: 369 I---MIRSNESFTEILLTMIKSQKMTHCLY-GLLVIMANLSTLPEEXXXXXXXXXXXXXX 424

Query: 255 VDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALG 314
                  +  V +        +  + K +     +   ++  L R + + S   +   + 
Sbjct: 425 XXXXXPAADKVGAEKAAKEDILLFNEKYI-----LRTELISFLKREMHNLSPNCKQQVVR 479

Query: 315 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST---IRLNALRALRNLIF-----LAE 366
            I NI            + G VK++++   +       IR+   RAL  ++      L  
Sbjct: 480 IIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIF 538

Query: 367 DKCKEEIFMELTASLLASLICDPEPSVQE----------QALALVRNLVDGRINSVEYIF 416
            K      +     LL       +  +            +AL  + NL     +  E + 
Sbjct: 539 KKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVC 598

Query: 417 AEDGIILDAVGR--QLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQS 474
                          L +     ++   + ++ N+ +   +      +    ++      
Sbjct: 599 KHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNI 658

Query: 475 CIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVK 534
            ++K LQ +D   + A      N+  ++ P  +  L+      ++ +   +  D   D++
Sbjct: 659 -LVKLLQLSDVESQRAVAAIFANIA-TTIPLIAKELLT--KKELIENAIQVFADQIDDIE 714

Query: 535 LR 536
           LR
Sbjct: 715 LR 716

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 41.7 bits (97), Expect = 6e-04
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 20/196 (10%)

Query: 269 ACMCLRSVS----RSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT 324
           A + L +++       + +       +     +  L+ D +  +Q + L  ISN++    
Sbjct: 579 ALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL 638

Query: 325 TRRSTFIRLGG------VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE----EIF 374
           T  + F  L          +LV+L +  D   +        N+        KE    +  
Sbjct: 639 TIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKEL 698

Query: 375 MELTASLLASLICDPEPSVQEQALALVRNLV----DGRINSVEYIFAEDGIILDAVGRQL 430
           +E    + A  I D E  ++++ L L   L     D   N V  +  E+  + DA+   L
Sbjct: 699 IENAIQVFADQIDDIE--LRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSL 756

Query: 431 RIASKAEIEIQGMYVL 446
           +           + V+
Sbjct: 757 KRGDSGPEFSAAIPVI 772

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 35/149 (23%)

Query: 250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQ 309
            ++ ++ AL  +   VR +A + L            G   +E  V PL++ L D    V+
Sbjct: 82  AVEPLIKALKDEDGWVRQSAAVAL------------GQIGDERAVEPLIKALKDEDWFVR 129

Query: 310 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC 369
           +AA  A+  I       R+       V+ L++  K  D  +R +A  AL           
Sbjct: 130 IAAAFALGEI----GDERA-------VEPLIKALKDEDGWVRQSAADAL----------- 167

Query: 370 KEEIFMELTASLLASLICDPEPSVQEQAL 398
             EI  E   + +  L        ++ A+
Sbjct: 168 -GEIGGERVRAAMEKLAETGTGFARKVAV 195

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 35/155 (22%), Positives = 57/155 (36%), Gaps = 36/155 (23%)

Query: 249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 308
           + ++ ++ AL  + + VR AA   L            G   +E  V PL++ L D    V
Sbjct: 50  RAVEPLIKALKDEDAWVRRAAADAL------------GQIGDERAVEPLIKALKDEDGWV 97

Query: 309 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 368
           + +A  A+  I                V+ L++  K  D  +R+ A  AL          
Sbjct: 98  RQSAAVALGQI-------GDE----RAVEPLIKALKDEDWFVRIAAAFALG--------- 137

Query: 369 CKEEIFMELTASLLASLICDPEPSVQEQAL-ALVR 402
              EI  E     L   + D +  V++ A  AL  
Sbjct: 138 ---EIGDERAVEPLIKALKDEDGWVRQSAADALGE 169

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 40/219 (18%), Positives = 74/219 (33%), Gaps = 61/219 (27%)

Query: 166 INNLLELLDDP------------GRVGDEASFAFSSLIA----EKEDMQKLAFEVNG--- 206
           +   ++ L D             G++GDE   A   LI     E   +++ A +  G   
Sbjct: 21  VEMYIKNLQDDSYYVRRAAAYALGKIGDER--AVEPLIKALKDEDAWVRRAAADALGQIG 78

Query: 207 ----VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS 262
               V+ L   L+      R+     +AL  +  +           + ++ ++ AL  + 
Sbjct: 79  DERAVEPLIKALKDEDGWVRQS--AAVALGQIGDE-----------RAVEPLIKALKDED 125

Query: 263 SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVD 322
             VR AA   L            G   +E  V PL++ L D    V+ +A  A+  I  +
Sbjct: 126 WFVRIAAAFAL------------GEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGE 173

Query: 323 FTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL 361
                           + +L+++     R  A+  L   
Sbjct: 174 -----------RVRAAMEKLAETGTGFARKVAVNYLETH 201

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 49/291 (16%), Positives = 88/291 (30%), Gaps = 87/291 (29%)

Query: 259 AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN 318
           A        AA               A    +   V   ++ L D S  V+ AA  A+  
Sbjct: 1   AWSHPQFEKAA---------------APLRADPEKVEMYIKNLQDDSYYVRRAAAYALGK 45

Query: 319 IVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELT 378
           I  +             V+ L++  K  D+ +R  A  AL  +     D        E  
Sbjct: 46  IGDE-----------RAVEPLIKALKDEDAWVRRAAADALGQI----GD--------ERA 82

Query: 379 ASLLASLICDPEPSVQEQAL-ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE 437
              L   + D +  V++ A  AL      G+I     +        + + + L+      
Sbjct: 83  VEPLIKALKDEDGWVRQSAAVAL------GQIGDERAV--------EPLIKALK-DEDWF 127

Query: 438 IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLN 497
           + I   + LG +       + AV               +IK L+  D  +R +A  A   
Sbjct: 128 VRIAAAFALGEIGD-----ERAV-------------EPLIKALKDEDGWVRQSAADA--- 166

Query: 498 LTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 548
                       L ++    + + ++ +        +      LE   SF+
Sbjct: 167 ------------LGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 42/165 (25%)

Query: 249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 308
           + ++ ++ AL  +   VR +A + L            G   +E  V PL++ L D    V
Sbjct: 76  RAVEPLIKALKDEDGWVRQSAAVAL------------GQIGDERAVEPLIKALKDEDWFV 123

Query: 309 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 368
           ++AA  A+  I       R+       V+ L++  K  D  +R +A  AL          
Sbjct: 124 RIAAAFALGEI----GDERA-------VEPLIKALKDEDGWVRQSAADAL---------- 162

Query: 369 CKEEIFMELTASLLASLICDPEPSVQEQAL-ALVRNLVDGRINSV 412
              EI  E   + +  L        ++ A+  L          S+
Sbjct: 163 --GEIGGERVRAAMEKLAETGTGFARKVAVNYL------ETHKSL 199

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 36/155 (23%)

Query: 249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 308
           + ++ ++ AL  + + VR AA   L            G   +E  V PL++ L D    V
Sbjct: 45  RAVEPLIKALKDEDAWVRRAAADAL------------GQIGDERAVEPLIKALKDEDGWV 92

Query: 309 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 368
           + +A  A+  I       R+       V+ L++  K  D  +R+ A  AL          
Sbjct: 93  RQSAAVALGQI----GDERA-------VEPLIKALKDEDWFVRIAAAFALG--------- 132

Query: 369 CKEEIFMELTASLLASLICDPEPSVQEQAL-ALVR 402
              EI  E     L   + D +  V++ A  AL  
Sbjct: 133 ---EIGDERAVEPLIKALKDEDGWVRQSAADALGE 164

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 41/216 (18%), Positives = 73/216 (33%), Gaps = 61/216 (28%)

Query: 169 LLELLDDP------------GRVGDEASFAFSSLIA----EKEDMQKLAFEVNG------ 206
            ++ L D             G++GDE   A   LI     E   +++ A +  G      
Sbjct: 19  YIKNLQDDSYYVRRAAAYALGKIGDER--AVEPLIKALKDEDAWVRRAAADALGQIGDER 76

Query: 207 -VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDV 265
            V+ L   L+      R+     +AL  +  +           + ++ ++ AL  +   V
Sbjct: 77  AVEPLIKALKDEDGWVRQS--AAVALGQIGDE-----------RAVEPLIKALKDEDWFV 123

Query: 266 RSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT 325
           R AA   L            G   +E  V PL++ L D    V+ +A  A+  I      
Sbjct: 124 RIAAAFAL------------GEIGDERAVEPLIKALKDEDGWVRQSAADALGEI----GG 167

Query: 326 RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL 361
            R           + +L+++     R  A+  L   
Sbjct: 168 ERV-------RAAMEKLAETGTGFARKVAVNYLETH 196

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 38/236 (16%), Positives = 83/236 (35%), Gaps = 19/236 (8%)

Query: 229 LALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF 288
           LA+  M     C R   ++  + + +   L  +   VR  A +C+  +      ++A   
Sbjct: 105 LAVRTMG----CIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD----INAQMV 156

Query: 289 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS 348
            ++  +  L  L+ D++  V   A+ A+S I           +    +  L+        
Sbjct: 157 EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTE 216

Query: 349 TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 408
             ++  L  L N     +D+  + I  E     L+        +V   A+ ++   ++  
Sbjct: 217 WGQIFILDCLSNYNP-KDDREAQSI-CERVTPRLSH----ANSAVVLSAVKVLMKFLELL 270

Query: 409 INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQL 464
               +Y      ++L  +   L      E E+Q    L N+    +   E +  ++
Sbjct: 271 PKDSDYY----NMLLKKLAPPLVTLLSGEPEVQ-YVALRNINLIVQKRPEILKQEI 321

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 33/259 (12%), Positives = 75/259 (28%), Gaps = 62/259 (23%)

Query: 291 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTI 350
           +     L RLLDD ++  ++++   +                   V+L ++     +   
Sbjct: 22  KLNDDELFRLLDDHNSLKRISSARVLQLRGGQ-----------DAVRLAIEFCSDKNYIR 70

Query: 351 RLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN 410
           R      L  +      K  ++    +   L    + D    V+  A           I 
Sbjct: 71  RDIGAFILGQI------KICKKCEDNVFNILNNMALNDKSACVRATA-----------IE 113

Query: 411 SVEYIFAEDGIILDAVGRQLRIASK---AEIEIQGMYVLGNVATGKESHKEAVMDQLLLR 467
           S      ++ I    +  Q +I +      +     + +  +      + +A +  L   
Sbjct: 114 STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI------NDKATIPLL--- 164

Query: 468 AENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN 527
                    I  L+  +  +R  A +A+              + K  ++ I      M+ 
Sbjct: 165 ---------INLLKDPNGDVRNWAAFAI-------------NINKYDNSDIRDCFVEMLQ 202

Query: 528 DPCLDVKLRVKTALEQFNS 546
           D   +V++     L     
Sbjct: 203 DKNEEVRIEAIIGLSYRKD 221

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 26/135 (19%)

Query: 227 ILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAG 286
            + + A  C      ++   S ++++         S++VR A    +             
Sbjct: 111 AIESTAQRCK-----KNPIYSPKIVEQSQITAFDKSTNVRRATAFAI------------S 153

Query: 287 SFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM 346
              ++  +  L+ LL D +  V+  A  AI+    D +               V++ +  
Sbjct: 154 VINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK 204

Query: 347 DSTIRLNALRALRNL 361
           +  +R+ A+  L   
Sbjct: 205 NEEVRIEAIIGLSYR 219

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 44.1 bits (103), Expect = 9e-05
 Identities = 59/389 (15%), Positives = 134/389 (34%), Gaps = 39/389 (10%)

Query: 158 DVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKG 217
           D   + ++ N +L+ L         AS   + +   +  + +       + +L  ++   
Sbjct: 84  DANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWP---ELIPQLVANVTNP 140

Query: 218 SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD--SSDVRSAACMCLRS 275
           +      E  L A+  +C  ++  + +  S ++L  ++  +  +  S++V+ AA   L +
Sbjct: 141 NSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN 200

Query: 276 VSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG 335
                K           I+  +        T V+VAAL  +  I+  +     T++    
Sbjct: 201 SLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPAL 260

Query: 336 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQE 395
             + ++  KS    + L  +    N+       C EE+ + + AS  A     PE + + 
Sbjct: 261 FAITIEAMKSDIDEVALQGIEFWSNV-------CDEEMDLAIEASEAAEQGRPPEHTSKF 313

Query: 396 QALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES 455
            A   ++ LV               I+   + +Q       +           +      
Sbjct: 314 YAKGALQYLVP--------------ILTQTLTKQDENDDDDDWNPC-KAAGVCLMLLATC 358

Query: 456 HKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHD 515
            ++ ++  +L          I + +++ D R R AAV A          G     +K   
Sbjct: 359 CEDDIVPHVL--------PFIKEHIKNPDWRYRDAAVMAF----GCILEGPEPSQLKPLV 406

Query: 516 AGIVSHVKNMVNDPCLDVKLRVKTALEQF 544
              +  +  ++ DP + V+      + + 
Sbjct: 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRI 435

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 23/105 (21%)

Query: 255 VDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALG 314
           +++L+++   +R AA   +            G+F +E  V PL++LL+D S  V+  A  
Sbjct: 48  LESLSNEDWRIRGAAAWII------------GNFQDERAVEPLIKLLEDDSGFVRSGAAR 95

Query: 315 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR 359
           ++  I  +                + +L+++     R  A+  L 
Sbjct: 96  SLEQIGGE-----------RVRAAMEKLAETGTGFARKVAVNYLE 129

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 21/182 (11%), Positives = 63/182 (34%), Gaps = 11/182 (6%)

Query: 225 EGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS-SDVRSAACMCLRSVSRSIKNL 283
           +  L  L  + +      +      ++  +   +  DS   + + A  CL  +++ +   
Sbjct: 33  KESLEVLEKLLTDHPKLENGEYG-ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR 91

Query: 284 SAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS 343
            +        V  L+    +    V  A   AI  I    +            + +V+  
Sbjct: 92  FSNYA--SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQ-------QESIVESL 142

Query: 344 KSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRN 403
            + + +++      +   +   +     +  ++L  + L   + +P+P+V++ +   +  
Sbjct: 143 SNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGT 202

Query: 404 LV 405
           L+
Sbjct: 203 LI 204

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	552
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.93
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.92
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.89
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.88
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.87
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.86
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.85
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.85
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.83
3grl_A	651	General vesicular transport factor P115; vesicle t	99.82
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.81
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.8
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.79
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.78
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.77
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.77
3grl_A	651	General vesicular transport factor P115; vesicle t	99.76
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.72
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.72
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.7
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.68
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.67
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.64
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.58
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.53
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.53
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.53
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.52
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.52
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.28
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.03
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.95
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.93
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.93
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.84
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.82
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.8
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.79
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.77
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.74
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.74
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.65
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.65
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.63
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.58
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.53
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.52
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.49
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.49
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.49
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.41
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.4
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.32
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.28
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.28
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.21
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	98.13
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.05
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.97
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.95
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.93
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.91
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.9
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.55
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.42
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.32
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.27
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.2
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.02
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.0
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.8
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.73
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.57
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.55
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.49
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.08
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	95.93
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.89
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.72
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.71
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.43
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.02
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	94.75
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	94.15
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	93.68
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.35
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	93.31
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.3
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	92.72
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	92.64
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	91.5
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	90.06
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	89.07
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	88.66
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	88.02
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	84.52
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	82.54
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	81.58
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	81.15
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	80.63

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.3e-43  Score=377.82  Aligned_cols=517  Identities=13%  Similarity=0.121  Sum_probs=404.1

Q ss_pred             HHHHHHHHHHHHHHcCCCCCC-cccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhh--HHHHHhcCchHHHHHh
Q 008827            9 EVVDAGARSLKMIYQSKMAPK-YDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLE--QKLLFDAGVLKRLTSL   85 (552)
Q Consensus         9 ~~~~~~l~~l~~l~~~~~~~~-~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~--~~~l~~~g~i~~L~~l   85 (552)
                      .....+.-||..++..-...+ .+.+.+..-..+...+..++.+-...|+.++.++......  ...+...|+++.++.+
T Consensus       219 ~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~L  298 (810)
T 3now_A          219 SSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAM  298 (810)
T ss_dssp             THHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHH
Confidence            344556666666654332211 1223323334455555555655567777788876554433  3445578999999999


Q ss_pred             hcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhH--
Q 008827           86 LGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK--  162 (552)
Q Consensus        86 L~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~--  162 (552)
                      +.+ +..+++.|++++++++.+ +..+..+.+    .+++.+..+++++++.+|..|+.+|++++...........+.  
T Consensus       299 l~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~----~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g  373 (810)
T 3now_A          299 ATTDDELQQRVACECLIAASSK-KDKAKALCE----QGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDG  373 (810)
T ss_dssp             HHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHH----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTT
T ss_pred             hCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHH----cCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhc
Confidence            998 568899999999998766 555555542    345889999999999999999999999975432111111222  


Q ss_pred             --HhHHHHHHHhcCC---CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC
Q 008827          163 --TKLINNLLELLDD---PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK  237 (552)
Q Consensus       163 --~g~i~~Lv~ll~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~  237 (552)
                        ...++.|+++|.+   +++++..|+++|++|+.+.+.....+.+.|++|.|+++|+++  ++.++..++++|+|++.+
T Consensus       374 ~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~--d~~i~~~al~~L~NLt~~  451 (810)
T 3now_A          374 AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGG--NQSCLYGVVTTFVNLCNA  451 (810)
T ss_dssp             HHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCC--ChHHHHHHHHHHHHHcCC
Confidence              3457778888873   468999999999999876555444445689999999999875  478999999999999975


Q ss_pred             Ch-----------------------------hHH---HHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccc
Q 008827          238 LE-----------------------------CCR---SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA  285 (552)
Q Consensus       238 ~~-----------------------------~~~---~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~  285 (552)
                      .+                             ..+   +.+++.|++|.|+.+++++++.+|..|+++|.|++.. +..+.
T Consensus       452 ~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~  530 (810)
T 3now_A          452 YEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRG  530 (810)
T ss_dssp             SCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred             chhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHH
Confidence            42                             223   5778999999999999999999999999999999976 44555


Q ss_pred             hhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHH--HHhhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 008827          286 GSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST--FIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLI  362 (552)
Q Consensus       286 ~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~--~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~  362 (552)
                      . +.+.|++|+|+.+|.++++..++.|+|+|+|++.+..+....  ....|++++|++++.++ +...+..|+++|.|++
T Consensus       531 ~-Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa  609 (810)
T 3now_A          531 K-VVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA  609 (810)
T ss_dssp             H-HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT
T ss_pred             H-HHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence            5 899999999999999999999999999999998654332110  01246999999999876 4455678999999999


Q ss_pred             ccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHH
Q 008827          363 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG  442 (552)
Q Consensus       363 ~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a  442 (552)
                      .. +++.+..+++.|+++.|+.++.++++.+|+.|+++++|++.+.+ ....+....| .++.|+.++.+ ++.+++..|
T Consensus       610 ~~-~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g-~l~~Lv~LL~s-~d~~vq~~A  685 (810)
T 3now_A          610 SM-NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNND-RVKFLALLCED-EDEETATAC  685 (810)
T ss_dssp             TS-CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSS-HHHHHHHGGGC-SSHHHHHHH
T ss_pred             cC-CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccC-cHHHHHHHhcC-CCHHHHHHH
Confidence            84 35788999999999999999999999999999999999998654 4444443223 79999999988 889999999


Q ss_pred             HHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHH
Q 008827          443 MYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHV  522 (552)
Q Consensus       443 ~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L  522 (552)
                      +|+|+|++.+++...+.+++      ..|+++.|+.+|++++.++|+.|+|+|.|++.    ++.++.+.+.+.|++++|
T Consensus       686 a~ALanLt~~s~~~~~~ii~------~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~----~s~e~~~~l~e~G~i~~L  755 (810)
T 3now_A          686 AGALAIITSVSVKCCEKILA------IASWLDILHTLIANPSPAVQHRGIVIILNMIN----AGEEIAKKLFETDIMELL  755 (810)
T ss_dssp             HHHHHHHHHHCHHHHHHHHT------STTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT----TCHHHHHHHHTSTHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHH------HcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh----CCHHHHHHHHHCCCHHHH
Confidence            99999999977777888875      26899999999999999999999999999996    467889999999999999


Q ss_pred             HhhhcCC---CccHHHHHHHHHHHHhhhc
Q 008827          523 KNMVNDP---CLDVKLRVKTALEQFNSFD  548 (552)
Q Consensus       523 ~~ll~~~---~~~v~~~a~~al~~~~~~~  548 (552)
                      .++++++   +.++.+.|..||.++.+.+
T Consensus       756 ~~LL~~~d~~~~~i~e~Al~aL~~ll~~g  784 (810)
T 3now_A          756 SGLGQLPDDTRAKAREVATQCLAAAERYR  784 (810)
T ss_dssp             TTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence            9998654   5789999999999998875

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=7.5e-43  Score=368.43  Aligned_cols=486  Identities=12%  Similarity=0.118  Sum_probs=406.9

Q ss_pred             cccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhc-CchHHHHHhhc-C-CHHHHHHHHHHHHHHhcCCh
Q 008827           32 FLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDA-GVLKRLTSLLG-G-SLIQRDASLESIATIFKNNP  108 (552)
Q Consensus        32 ~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~-g~i~~L~~lL~-~-~~~v~~~al~~L~~l~~~~~  108 (552)
                      .+..+.++.|+.+|+++++.+++.|+.+|.+++..+.++..+... |++++|+++|. + ++.++..++.+|.+++.+.+
T Consensus        13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~   92 (529)
T 1jdh_A           13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE   92 (529)
T ss_dssp             ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred             hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch
Confidence            356788999999999999999999999999999888887777754 89999999997 3 67899999999999987644


Q ss_pred             hhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHH
Q 008827          109 EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAF  187 (552)
Q Consensus       109 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L  187 (552)
                       ....+.+   .+.++.++++++++++.+|..|+.+|.+++...+. .+..++..|++|.|++++++ +.+++..++.+|
T Consensus        93 -~~~~i~~---~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L  167 (529)
T 1jdh_A           93 -GLLAIFK---SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL  167 (529)
T ss_dssp             -HHHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT-HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred             -hHHHHHH---cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc-hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence             4455543   68999999999999999999999999999987543 35567789999999999984 457788888999


Q ss_pred             HHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHH
Q 008827          188 SSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRS  267 (552)
Q Consensus       188 ~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~  267 (552)
                      .+++..+++.+..+.+.|+++.|++++++.+ +...+..+..+|.+++. ++..+..+.+.|+++.++++++++++.++.
T Consensus       168 ~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~  245 (529)
T 1jdh_A          168 QILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQ  245 (529)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHH
T ss_pred             HHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHH
Confidence            9999988998888999999999999998773 56677889999999986 567888999999999999999999999999


Q ss_pred             HHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC--
Q 008827          268 AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS--  345 (552)
Q Consensus       268 ~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~--  345 (552)
                      .++++|.++++..+..    ....+++|.|++++.+++++++..|+++|+|++.+.+..+..+.+.|+++.|++++.+  
T Consensus       246 ~a~~~L~~l~~~~~~~----~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~  321 (529)
T 1jdh_A          246 NCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG  321 (529)
T ss_dssp             HHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCChhh----HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccC
Confidence            9999999999874321    2345889999999999999999999999999998777788899999999999999975  


Q ss_pred             CCHHHHHHHHHHHHHhcccCCh--HhHHHHHHhhcHHHHHhhhcCCC-hhHHHHHHHHHHHhhcCCcchHHHHHhhcCch
Q 008827          346 MDSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPE-PSVQEQALALVRNLVDGRINSVEYIFAEDGII  422 (552)
Q Consensus       346 ~~~~v~~~a~~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~  422 (552)
                      +++.++..++++|+|++...+.  ..+..+.+.++++.+++++.+++ +.++..++++|+|++.+.. ....+.+.+  +
T Consensus       322 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~--~  398 (529)
T 1jdh_A          322 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQG--A  398 (529)
T ss_dssp             TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTT--H
T ss_pred             CHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcC--C
Confidence            3479999999999999875332  25778889999999999999876 5999999999999998654 446666666  8


Q ss_pred             HHHHHHHhcccCchhHHHHHHHHHHh----------------------hcCCChhhHHHHHHHhhHhhhhhhHHHHHHhh
Q 008827          423 LDAVGRQLRIASKAEIEIQGMYVLGN----------------------VATGKESHKEAVMDQLLLRAENKAQSCIIKFL  480 (552)
Q Consensus       423 ~~~l~~~L~~~~~~~v~~~a~~~L~~----------------------la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL  480 (552)
                      ++.|+.+|.+ ++++++..++|+++|                      ++. .+..+..+.+       .|+++.|+.++
T Consensus       399 i~~L~~ll~~-~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~-~~~~~~~l~~-------~~~v~~l~~ll  469 (529)
T 1jdh_A          399 IPRLVQLLVR-AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRG-------LNTIPLFVQLL  469 (529)
T ss_dssp             HHHHHHHHHH-HHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT-SHHHHHHHHH-------TTCHHHHHHGG
T ss_pred             HHHHHHHHHH-HhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc-CchHHHHHhc-------cCCccHHHHHH
Confidence            9999999987 677777777776666                      433 2333444444       78999999999


Q ss_pred             cCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHh
Q 008827          481 QSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN  545 (552)
Q Consensus       481 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~  545 (552)
                      .+++++++..|++++.+++.     ..+....+.+.|+++.|.+++++++++++++|.++|.+++
T Consensus       470 ~~~~~~v~~~a~~~l~~l~~-----~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~  529 (529)
T 1jdh_A          470 YSPIENIQRVAAGVLCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             GCSCHHHHHHHHHHHHHHTT-----SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             cCCchHHHHHHHHHHHHHhc-----CHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence            99999999999999999984     4677888999999999999999999999999999999874

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2.6e-43  Score=375.52  Aligned_cols=475  Identities=14%  Similarity=0.140  Sum_probs=395.4

Q ss_pred             CCcHHHHHHHHHHHHHHHcCCCCCCcccc-cccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHH
Q 008827            5 KSYMEVVDAGARSLKMIYQSKMAPKYDFL-QEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLT   83 (552)
Q Consensus         5 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~-~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~   83 (552)
                      +.+..-...+.+++.+++..+......++ .++.++.|+.+++++++.+++.|+.++.++|.....|..+.+.|+ ++|.
T Consensus       258 ~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~  336 (810)
T 3now_A          258 APDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV-DILK  336 (810)
T ss_dssp             SCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHH
T ss_pred             cCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHH
Confidence            34555567788999999877644434445 789999999999999999999999999999999888999999886 9999


Q ss_pred             HhhcC-CHHHHHHHHHHHHHHhcCCh-hhh-hhhccccCCccHHHHHHHHhcC--ChhhHHHHHHHHHHHhhhCCCcchh
Q 008827           84 SLLGG-SLIQRDASLESIATIFKNNP-EVV-SQFVGPDTGRTLSCIIEIVKDR--FARTRLLASLCLIVIRNASPCYLQD  158 (552)
Q Consensus        84 ~lL~~-~~~v~~~al~~L~~l~~~~~-~~~-~~~~~~~~~~~l~~l~~ll~~~--~~~vr~~A~~~L~~l~~~~~~~~~~  158 (552)
                      .++++ ++.+|..|+.+|+++..... +.. ..+..-.....++.+.+++.++  +++++..|+++|.+++.....  +.
T Consensus       337 ~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v--k~  414 (810)
T 3now_A          337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC--KE  414 (810)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH--HH
T ss_pred             HHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH--HH
Confidence            99986 56899999999999975432 111 2221100012356677788887  899999999999999876433  34


Q ss_pred             hhh-HHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCH-----------------------------HHH---HHHHHh
Q 008827          159 VGI-KTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKE-----------------------------DMQ---KLAFEV  204 (552)
Q Consensus       159 ~~~-~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~-----------------------------~~~---~~~~~~  204 (552)
                      .++ ..|++|.|+++++ +++.++..|+++|+|++.+++                             ..+   +.+++.
T Consensus       415 ~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea  494 (810)
T 3now_A          415 KLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE  494 (810)
T ss_dssp             HHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC
Confidence            444 4799999999998 567899999999999998541                             233   568899


Q ss_pred             CcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc
Q 008827          205 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS  284 (552)
Q Consensus       205 ~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~  284 (552)
                      |++|.|++++.+++  +.+++.|+++|++++. ++++|..+++.|++|.|+.+|+++++..+..|+++|.+++.+... .
T Consensus       495 GaVp~LV~LL~s~s--~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p-~  570 (810)
T 3now_A          495 GITTALCALAKTES--HNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP-E  570 (810)
T ss_dssp             THHHHHHHHHTCCC--HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-H
T ss_pred             cCHHHHHHHHcCCC--HHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh-h
Confidence            99999999998764  8999999999999996 567999999999999999999999999999999999999876322 1


Q ss_pred             chhh---hccCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008827          285 AGSF---MNETIVIPLVRLLDDT-STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN  360 (552)
Q Consensus       285 ~~~~---~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~  360 (552)
                      .. +   ...+++|+|+.+|.++ +...+..|+++|.||+...+..++.+++.|+++.|+.++.++++.+|..|+++++|
T Consensus       571 ~~-~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~N  649 (810)
T 3now_A          571 VS-FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN  649 (810)
T ss_dssp             HH-TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred             hh-hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            11 1   1246899999999855 55566799999999998877888899999999999999999999999999999999


Q ss_pred             hcccCChHhHHHHHH-hhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHh-hcCchHHHHHHHhcccCchhH
Q 008827          361 LIFLAEDKCKEEIFM-ELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFA-EDGIILDAVGRQLRIASKAEI  438 (552)
Q Consensus       361 l~~~~~~~~~~~i~~-~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~~~~~~~~l~~~L~~~~~~~v  438 (552)
                      ++.  .++.+..+.+ .+.++.|+.++.+++..+|..|+|+|+|++.+++..++.+++ .+  .++.|+++|.+ +++++
T Consensus       650 La~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g--~I~~Lv~LL~s-~d~~v  724 (810)
T 3now_A          650 LVM--SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIAS--WLDILHTLIAN-PSPAV  724 (810)
T ss_dssp             HTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTT--HHHHHHHHHTC-SSHHH
T ss_pred             HhC--ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcC--CHHHHHHHHCC-CCHHH
Confidence            987  3456777775 678999999999999999999999999999987778899998 55  78999999998 99999


Q ss_pred             HHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC---ChhHHHHHHHHHHhhc
Q 008827          439 EIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN---DSRLRTAAVWAVLNLT  499 (552)
Q Consensus       439 ~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~---~~~~~~~a~~~l~~l~  499 (552)
                      +..++|++.|++.++.++...+.+       .|+++.|+.+++.+   +.++...|..+|.++.
T Consensus       725 q~~A~~aL~NL~~~s~e~~~~l~e-------~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll  781 (810)
T 3now_A          725 QHRGIVIILNMINAGEEIAKKLFE-------TDIMELLSGLGQLPDDTRAKAREVATQCLAAAE  781 (810)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHT-------STHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHH-------CCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence            999999999999877777777775       89999999999765   6889999999998886

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.9e-41  Score=362.00  Aligned_cols=490  Identities=13%  Similarity=0.121  Sum_probs=415.7

Q ss_pred             cccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhc-CchHHHHHhhcC--CHHHHHHHHHHHHHHhcCCh
Q 008827           32 FLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDA-GVLKRLTSLLGG--SLIQRDASLESIATIFKNNP  108 (552)
Q Consensus        32 ~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~-g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~  108 (552)
                      .+..+.++.|+.+|+++++.+++.|+.+|.+++....++..+... |+++.|+++|.+  +..++..|+.+|..++...+
T Consensus        10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~   89 (644)
T 2z6h_A           10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE   89 (644)
T ss_dssp             --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH
T ss_pred             hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Confidence            357789999999999999999999999999999888877766654 899999999985  57899999999999987654


Q ss_pred             hhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHH
Q 008827          109 EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAF  187 (552)
Q Consensus       109 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L  187 (552)
                       ....+.+   .+.++.++++++++++.+|..|+.+|.+++..... ....++..|++|.|++++++ +.+++..++.+|
T Consensus        90 -~~~~i~~---~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~-~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L  164 (644)
T 2z6h_A           90 -GLLAIFK---SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL  164 (644)
T ss_dssp             -HHHHHHT---TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTT-HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred             -hHHHHHH---cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch-hHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHH
Confidence             4445543   58999999999999999999999999999987543 34566789999999999984 456777778899


Q ss_pred             HHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHH
Q 008827          188 SSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRS  267 (552)
Q Consensus       188 ~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~  267 (552)
                      .+++..+++.+..+.+.|+++.|++++.+.+ ....+..++.+|.+++. .+..+..+.+.|+++.++.++++++..++.
T Consensus       165 ~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~  242 (644)
T 2z6h_A          165 QILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQ  242 (644)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHH
T ss_pred             HHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence            9999888888888999999999999998773 56778899999999986 567889999999999999999999999999


Q ss_pred             HHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC-
Q 008827          268 AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-  346 (552)
Q Consensus       268 ~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-  346 (552)
                      .++++|.++++.....    ....++++.|++++.+++++++..|+++|+|++......++.+.+.|+++.|++++.+. 
T Consensus       243 ~a~~~L~nL~~~~~~~----~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~  318 (644)
T 2z6h_A          243 NCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG  318 (644)
T ss_dssp             HHHHHHHHHGGGCTTC----CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhcchhh----hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccC
Confidence            9999999999874321    23458999999999999999999999999999988778888999999999999999863 


Q ss_pred             -CHHHHHHHHHHHHHhcccCCh--HhHHHHHHhhcHHHHHhhhcCCC-hhHHHHHHHHHHHhhcCCcchHHHHHhhcCch
Q 008827          347 -DSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPE-PSVQEQALALVRNLVDGRINSVEYIFAEDGII  422 (552)
Q Consensus       347 -~~~v~~~a~~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~  422 (552)
                       .+.++..++++|+|++...+.  ..+..+.+.++++.|+++|.+++ +.++..++++|+|++.+... ...+++.+  +
T Consensus       319 ~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~--~  395 (644)
T 2z6h_A          319 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQG--A  395 (644)
T ss_dssp             TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTT--H
T ss_pred             CcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcC--C
Confidence             379999999999999864322  24566888899999999999875 69999999999999987544 46677776  7


Q ss_pred             HHHHHHHhccc---------------------CchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 008827          423 LDAVGRQLRIA---------------------SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ  481 (552)
Q Consensus       423 ~~~l~~~L~~~---------------------~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~  481 (552)
                      ++.|+++|.+.                     .+.+++..++.+|.+++.. +..+..+.+       .|+++.|+.+|.
T Consensus       396 i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~-~~~~~~l~~-------~~~i~~Lv~lL~  467 (644)
T 2z6h_A          396 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRG-------LNTIPLFVQLLY  467 (644)
T ss_dssp             HHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS-HHHHHHHHH-------TTCHHHHHHHTT
T ss_pred             HHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC-HHHHHHHHh-------CCcHHHHHHHHc
Confidence            89998888761                     1345667788888888864 345555554       799999999999


Q ss_pred             CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhc
Q 008827          482 SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  548 (552)
Q Consensus       482 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~  548 (552)
                      ++++.++..|+++|.+++.     ..+....+.+.|+++.|.++++++++++++.|.+||.++....
T Consensus       468 ~~~~~v~~~a~~aL~~l~~-----~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~  529 (644)
T 2z6h_A          468 SPIENIQRVAAGVLCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK  529 (644)
T ss_dssp             CSCHHHHHHHHHHHHHHHT-----SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred             CCCHHHHHHHHHHHHHHHc-----CHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence            9999999999999999984     4677888999999999999999999999999999999987643

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=2.5e-41  Score=353.34  Aligned_cols=413  Identities=16%  Similarity=0.191  Sum_probs=362.6

Q ss_pred             ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHH
Q 008827          121 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQ  198 (552)
Q Consensus       121 ~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~  198 (552)
                      ..++.+++.++++|+..|..|+..+..+.....+...+.+++.|++|.|+++|+  +++.+|.+|+++|+|+++++++.+
T Consensus        57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~  136 (510)
T 3ul1_B           57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  136 (510)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            468999999999999999999999999876655555788999999999999997  346799999999999999999999


Q ss_pred             HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCC-----HHHHHHHHHHH
Q 008827          199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS-----SDVRSAACMCL  273 (552)
Q Consensus       199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~-----~~v~~~a~~~L  273 (552)
                      +.+++.|++|.|+++|.++  ++.+++.|+++|++++.+++..|..+.+.|+++.++.++..++     ..++..+++++
T Consensus       137 ~~vv~~GaIp~Lv~lL~s~--~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L  214 (510)
T 3ul1_B          137 KAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL  214 (510)
T ss_dssp             HHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence            9999999999999999876  4889999999999999988999999999999999999998654     35678899999


Q ss_pred             HHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHH
Q 008827          274 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN  353 (552)
Q Consensus       274 ~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~  353 (552)
                      .++++........ ....+++|.|++++.+++++++..|+++|++++.+.....+.+.+.|+++.|++++.+++..++..
T Consensus       215 ~nl~~~~~~~~~~-~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  293 (510)
T 3ul1_B          215 SNLCRNKNPAPPL-DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP  293 (510)
T ss_dssp             HHHHCCCSSCCCH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred             HHHhhcccchhHH-HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhH
Confidence            9999874443332 345789999999999999999999999999999887777778889999999999999999999999


Q ss_pred             HHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccc
Q 008827          354 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA  433 (552)
Q Consensus       354 a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~  433 (552)
                      ++++|+|++.+ ++..+..+++.++++.|+.++.++++.++..++|+|+|++.+.++....+++.+  +++.++.+|.+ 
T Consensus       294 al~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g--~i~~Lv~lL~~-  369 (510)
T 3ul1_B          294 ALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG--LVPFLVGVLSK-  369 (510)
T ss_dssp             HHHHHHHHTTS-CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHHHHS-
T ss_pred             HHHHHHHhhcC-CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcC--CHHHHHHHHcC-
Confidence            99999999874 456788899999999999999999999999999999999999888888888887  89999999988 


Q ss_pred             CchhHHHHHHHHHHhhcC-CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCC--CCCCCHHHH
Q 008827          434 SKAEIEIQGMYVLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS--SSPGSSGRL  510 (552)
Q Consensus       434 ~~~~v~~~a~~~L~~la~-~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~  510 (552)
                      ++.+++..|+|+|+|++. ++..++..+++       .|+++.|+.+|+++|++++..++++|.|+...  ..+......
T Consensus       370 ~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~-------~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~  442 (510)
T 3ul1_B          370 ADFKTQKEAAWAITNYTSGGTVEQIVYLVH-------CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLS  442 (510)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCCHHHHHHHHH-------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHccCCHHHHHHHHH-------CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHH
Confidence            899999999999999997 45555666665       89999999999999999999999999998731  112334445


Q ss_pred             HHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          511 VKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       511 ~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      ..+.+.|+++.|..|..+++.++.++|...|.+++..
T Consensus       443 ~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~  479 (510)
T 3ul1_B          443 IMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV  479 (510)
T ss_dssp             HHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence            6677899999999999889999999999999888754

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=1e-40  Score=364.88  Aligned_cols=511  Identities=12%  Similarity=0.109  Sum_probs=425.1

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhc-CchHHH
Q 008827            4 LKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDA-GVLKRL   82 (552)
Q Consensus         4 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~-g~i~~L   82 (552)
                      .+++..+...+++.++..-       ...+..+.++.|+.+|.++++.+++.|+.+|.+++....++..+... |+++.|
T Consensus       125 ~~~~~~~r~~a~~~l~~~~-------~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~L  197 (780)
T 2z6g_A          125 AEPSQMLKHAVVNLINYQD-------DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI  197 (780)
T ss_dssp             -CCSCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHH
T ss_pred             cCccHHHHHHHHHHHHhhh-------HHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHH
Confidence            3445555566666666431       12334788999999999989999999999999999887777767654 899999


Q ss_pred             HHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhh
Q 008827           83 TSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVG  160 (552)
Q Consensus        83 ~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~  160 (552)
                      +.+|++  +..+|..|+.+|.+++...+. ...+.+   .+.++.++.+++++++.+|..|+.+|.+++...+. .+..+
T Consensus       198 v~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~-~~~i~~---~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~v  272 (780)
T 2z6g_A          198 VRTMQNTNDVETARCTSGTLHNLSHHREG-LLAIFK---SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG-AKMAV  272 (780)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHTSHHH-HHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT-HHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhCCchh-HHHHHH---cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh-hHHHH
Confidence            999973  678999999999999876433 445543   58899999999999999999999999999987543 34556


Q ss_pred             hHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCCh
Q 008827          161 IKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE  239 (552)
Q Consensus       161 ~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~  239 (552)
                      +..|++|.|++++.+ +..++..++.+|.+++..+++.+..+.+.|+++.|++++++.+ ....++.+..+|.+++. .+
T Consensus       273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~-~~  350 (780)
T 2z6g_A          273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-CS  350 (780)
T ss_dssp             HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHT-ST
T ss_pred             HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhc-Ch
Confidence            678999999999984 4567888999999999888888888889999999999998763 45677788999999996 45


Q ss_pred             hHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008827          240 CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNI  319 (552)
Q Consensus       240 ~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl  319 (552)
                      ..+..+++.|+++.|+.++.+++..++..++++|.+++......    ....++++.|+++|.+++++++..|+++|++|
T Consensus       351 ~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~----~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L  426 (780)
T 2z6g_A          351 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNL  426 (780)
T ss_dssp             THHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh----hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            77888999999999999999999999999999999998864321    23468899999999999999999999999999


Q ss_pred             hcCCchhHHHHHhhCcHHHHHHhhcC-C-CHHHHHHHHHHHHHhcccCCh--HhHHHHHHhhcHHHHHhhhcCCCh-hHH
Q 008827          320 VVDFTTRRSTFIRLGGVKLLVQLSKS-M-DSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPEP-SVQ  394 (552)
Q Consensus       320 ~~~~~~~~~~~~~~g~i~~L~~ll~~-~-~~~v~~~a~~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~ll~~~~~-~v~  394 (552)
                      +.+....+..+.+.|+++.|++++.+ + .+.++..|+++|+|++.....  ..+..+...++++.|+++|.+++. .++
T Consensus       427 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~  506 (780)
T 2z6g_A          427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI  506 (780)
T ss_dssp             TSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHH
T ss_pred             HhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHH
Confidence            98887888889999999999999976 3 358999999999999864332  135678889999999999998775 999


Q ss_pred             HHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCc----------------------hhHHHHHHHHHHhhcCC
Q 008827          395 EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK----------------------AEIEIQGMYVLGNVATG  452 (552)
Q Consensus       395 ~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~----------------------~~v~~~a~~~L~~la~~  452 (552)
                      ..++++|+|++.+.. ....+.+.+  +++.|+++|.+ ++                      ++++..++.+|.+++. 
T Consensus       507 ~~A~~aL~nLa~~~~-~~~~i~~~g--~i~~Lv~lL~~-~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~-  581 (780)
T 2z6g_A          507 KATVGLIRNLALCPA-NHAPLREQG--AIPRLVQLLVR-AHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR-  581 (780)
T ss_dssp             HHHHHHHHHHHSSHH-HHHHHHHTT--HHHHHHHHHHH-HHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHhcCHH-HHHHHHHCC--CHHHHHHHHHh-cchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc-
Confidence            999999999997643 345666666  78888888865 22                      4567778888888885 


Q ss_pred             ChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCcc
Q 008827          453 KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLD  532 (552)
Q Consensus       453 ~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~  532 (552)
                      ++..+..+.+       .|+++.|+.+|.++++.++..|+.+|.+++.     ..+....+.+.|+++.|.+++++++++
T Consensus       582 ~~~~~~~l~~-------~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-----~~~~~~~i~~~g~i~~L~~Ll~~~~~~  649 (780)
T 2z6g_A          582 DIHNRIVIRG-------LNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEG  649 (780)
T ss_dssp             SHHHHHHHHH-------TCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT-----SHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred             ChhhHHHHHH-------CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc-----CHHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence            4445555554       8999999999999999999999999999984     467788999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcC
Q 008827          533 VKLRVKTALEQFNSFDD  549 (552)
Q Consensus       533 v~~~a~~al~~~~~~~~  549 (552)
                      +|+.|.+||.++.....
T Consensus       650 Vr~~A~~aL~~l~~~~~  666 (780)
T 2z6g_A          650 VATYAAAVLFRMSEDKP  666 (780)
T ss_dssp             HHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCh
Confidence            99999999999987543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.8e-40  Score=348.73  Aligned_cols=414  Identities=15%  Similarity=0.183  Sum_probs=363.2

Q ss_pred             CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHH
Q 008827          120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDM  197 (552)
Q Consensus       120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~  197 (552)
                      ...++.++..+.++++..+..|+..+..+.........+.+++.|++|.|+++|+  +++.++.+|+++|++++.+++..
T Consensus        75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~  154 (529)
T 3tpo_A           75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ  154 (529)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            4568999999999999999999999999876655555678999999999999997  34679999999999999999998


Q ss_pred             HHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCC-----HHHHHHHHHH
Q 008827          198 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS-----SDVRSAACMC  272 (552)
Q Consensus       198 ~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~-----~~v~~~a~~~  272 (552)
                      .+.+++.|++|.|+.+|.+++  +.+++.|+++|++++.+++.+|..+.+.|+++.++.+|..++     ..++..++++
T Consensus       155 ~~~vv~~Gaip~Lv~LL~s~~--~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~  232 (529)
T 3tpo_A          155 TKAVVDGGAIPAFISLLASPH--AHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT  232 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHH
Confidence            889999999999999888764  889999999999999999999999999999999999998654     3567889999


Q ss_pred             HHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHH
Q 008827          273 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL  352 (552)
Q Consensus       273 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~  352 (552)
                      +.+++++....... ....+++|.|+.++.+++++++..|+|+|++++.+.....+.+.+.|+++.|++++.+++..++.
T Consensus       233 L~nl~~~~~~~~~~-~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~  311 (529)
T 3tpo_A          233 LSNLCRNKNPAPPL-DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT  311 (529)
T ss_dssp             HHHHHCCCTTCCCH-HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred             HHHHHhcccchhhH-HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHH
Confidence            99999875443332 34578999999999999999999999999999988887788888999999999999999999999


Q ss_pred             HHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc
Q 008827          353 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI  432 (552)
Q Consensus       353 ~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~  432 (552)
                      .++++|+|++.+ ++..+..+++.|+++.|+.++.++++.++..|+|+|+|++.+.++....+++.+  +++.++.+|.+
T Consensus       312 ~a~~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g--~i~~Lv~lL~~  388 (529)
T 3tpo_A          312 PALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG--LVPFLVGVLSK  388 (529)
T ss_dssp             HHHHHHHHHTTS-CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTT--HHHHHHHHHHS
T ss_pred             HHHHHHHHHHcc-chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcC--cHHHHHHHhcC
Confidence            999999999874 456888899999999999999999999999999999999999888888888887  89999999988


Q ss_pred             cCchhHHHHHHHHHHhhcC-CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCC--CCCCCHHH
Q 008827          433 ASKAEIEIQGMYVLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS--SSPGSSGR  509 (552)
Q Consensus       433 ~~~~~v~~~a~~~L~~la~-~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~  509 (552)
                       ++.+++..|+|+|+|++. +++.++..+++       .|+++.|+.+|.++|++++..++++|.|+...  ..+.....
T Consensus       389 -~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~-------~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~  460 (529)
T 3tpo_A          389 -ADFKTQKAAAWAITNYTSGGTVEQIVYLVH-------CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKL  460 (529)
T ss_dssp             -SCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             -CCHHHHHHHHHHHHHHHcCCCHHHHHHHHH-------CcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHH
Confidence             899999999999999987 45556666665       89999999999999999999999999998631  11233444


Q ss_pred             HHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          510 LVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       510 ~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      ...+.+.|+++.|..|..+++.++.++|...|++++..
T Consensus       461 ~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~  498 (529)
T 3tpo_A          461 SIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV  498 (529)
T ss_dssp             HHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence            55677999999999999989999999999999888754

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.3e-38  Score=335.69  Aligned_cols=415  Identities=16%  Similarity=0.179  Sum_probs=363.3

Q ss_pred             CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-C-CchhchHHHHHHHhhcCCHHH
Q 008827          120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-P-GRVGDEASFAFSSLIAEKEDM  197 (552)
Q Consensus       120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~-~~v~~~a~~~L~~l~~~~~~~  197 (552)
                      ...++.++..+.++++.+|..|+..|.++.........+.++..|++|.|+++|.+ + +.++..|+++|.+++.+++..
T Consensus        73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~  152 (528)
T 4b8j_A           73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN  152 (528)
T ss_dssp             --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            35689999999999999999999999999776543456778889999999999984 3 688999999999999998998


Q ss_pred             HHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhc-CCCCHHHHHHHHHHHHHh
Q 008827          198 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL-AHDSSDVRSAACMCLRSV  276 (552)
Q Consensus       198 ~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L-~~~~~~v~~~a~~~L~~l  276 (552)
                      +..+++.|+++.|+.+|.++  ++.+++.|+++|++++.+++..+..+.+.|+++.++.++ .+.++.++..++++|.++
T Consensus       153 ~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L  230 (528)
T 4b8j_A          153 TKVVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF  230 (528)
T ss_dssp             HHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            89999999999999999875  488999999999999998888999999999999999999 678999999999999999


Q ss_pred             hcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHH
Q 008827          277 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR  356 (552)
Q Consensus       277 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~  356 (552)
                      +...+... . ....+++|.|+.+|.+++++++..|+++|++++.+.....+.+.+.|+++.|+.++.++++.++..|++
T Consensus       231 ~~~~~~~~-~-~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~  308 (528)
T 4b8j_A          231 CRGKPQPS-F-EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR  308 (528)
T ss_dssp             HCSSSCCC-H-HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HcCCCCCc-H-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHH
Confidence            98743332 2 456899999999999999999999999999999877776778889999999999999999999999999


Q ss_pred             HHHHhcccCChHhHHHHHHhhcHHHHHhhhcCC-ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCc
Q 008827          357 ALRNLIFLAEDKCKEEIFMELTASLLASLICDP-EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK  435 (552)
Q Consensus       357 aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~  435 (552)
                      +|+|++.+ ++.....+++.++++.|+.++.++ ++.++..|+++|+|++.+.++.+..++..+  +++.|+.+|.+ ++
T Consensus       309 ~L~nl~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~--~i~~L~~lL~~-~~  384 (528)
T 4b8j_A          309 TVGNIVTG-DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAG--IIGPLVNLLQT-AE  384 (528)
T ss_dssp             HHHHHTTS-CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT--CHHHHHHHHHH-SC
T ss_pred             HHHHHHcC-CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCC--CHHHHHHHHhc-CC
Confidence            99999874 456778888999999999999998 999999999999999998877888888877  79999999988 78


Q ss_pred             hhHHHHHHHHHHhhcCC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCC-------CCH
Q 008827          436 AEIEIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSP-------GSS  507 (552)
Q Consensus       436 ~~v~~~a~~~L~~la~~-~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~-------~~~  507 (552)
                      +.++..++++|+|++.+ ++..+..+++       .|+++.|+.+|.++++.++..++++|.++......       +..
T Consensus       385 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~-------~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~  457 (528)
T 4b8j_A          385 FDIKKEAAWAISNATSGGSHDQIKYLVS-------EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVN  457 (528)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHH-------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHH-------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence            99999999999999985 5666666665       79999999999999999999999999999841100       122


Q ss_pred             HHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhcC
Q 008827          508 GRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD  549 (552)
Q Consensus       508 ~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~~  549 (552)
                      .....+.+.|+++.|..+..+++++++++|.+.|.++....+
T Consensus       458 ~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~  499 (528)
T 4b8j_A          458 VFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEE  499 (528)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence            357788899999999999999999999999999999887643

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=5.6e-38  Score=330.83  Aligned_cols=415  Identities=15%  Similarity=0.184  Sum_probs=362.6

Q ss_pred             CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC--CCchhchHHHHHHHhhcCCHHH
Q 008827          120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDM  197 (552)
Q Consensus       120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~--~~~v~~~a~~~L~~l~~~~~~~  197 (552)
                      ...++.++..++++++.+|..|+..|.++.........+.++..|++|.|+++|.+  ++.++..|+++|.+++.+++..
T Consensus        86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~  165 (530)
T 1wa5_B           86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  165 (530)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            46789999999999999999999999999765433334567789999999999984  4678999999999999998888


Q ss_pred             HHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 008827          198 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVS  277 (552)
Q Consensus       198 ~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls  277 (552)
                      +..+++.|+++.|+.+|.++  ++.+++.|+++|++++.+++..+..+...|++|.++.++.+.++.++..++++|.+++
T Consensus       166 ~~~~~~~g~i~~Lv~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~  243 (530)
T 1wa5_B          166 TKVVVDADAVPLFIQLLYTG--SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC  243 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence            88888999999999999875  4889999999999999888889999999999999999999999999999999999999


Q ss_pred             cccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHH
Q 008827          278 RSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRA  357 (552)
Q Consensus       278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~a  357 (552)
                      ......... ....+++|.|+.+|.+++++++..|+++|++++...+...+.+.+.|+++.|+.++.++++.++..++++
T Consensus       244 ~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~  322 (530)
T 1wa5_B          244 RGKKPQPDW-SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA  322 (530)
T ss_dssp             CCSSSCCCH-HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             CCCCCCCcH-HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHH
Confidence            874233333 5668999999999999999999999999999998777777788889999999999999999999999999


Q ss_pred             HHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchh
Q 008827          358 LRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE  437 (552)
Q Consensus       358 L~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~  437 (552)
                      |++++.+ ++.....+++.++++.++.+|.++++.++..|+++|++++.+.++....+++.+  +++.|..+|.+ +++.
T Consensus       323 L~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~--~l~~L~~lL~~-~~~~  398 (530)
T 1wa5_B          323 VGNIVTG-NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN--LIPPLVKLLEV-AEYK  398 (530)
T ss_dssp             HHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--CHHHHHHHHHH-SCHH
T ss_pred             HHHHHcC-CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC--CHHHHHHHHhc-CCHH
Confidence            9999874 355677788889999999999999999999999999999998887888888777  79999999987 8899


Q ss_pred             HHHHHHHHHHhhcCC-Ch--hhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCC-------CCCH
Q 008827          438 IEIQGMYVLGNVATG-KE--SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSS-------PGSS  507 (552)
Q Consensus       438 v~~~a~~~L~~la~~-~~--~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~-------~~~~  507 (552)
                      ++..++|+|+|++.+ .+  .+...+++       .|+++.|+.++.++++.++..|+++|.+++....       .+..
T Consensus       399 v~~~a~~aL~~l~~~~~~~~~~~~~l~~-------~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~  471 (530)
T 1wa5_B          399 TKKEACWAISNASSGGLQRPDIIRYLVS-------QGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNIN  471 (530)
T ss_dssp             HHHHHHHHHHHHHHHTTTCTHHHHHHHH-------TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHHHHHHhcCCCcHHHHHHHHH-------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhccccccc
Confidence            999999999999874 33  45666665       7899999999999999999999999999985210       0112


Q ss_pred             HHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhc
Q 008827          508 GRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  548 (552)
Q Consensus       508 ~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~  548 (552)
                      .....+.+.|+++.|..++.+++++++++|.++|.++....
T Consensus       472 ~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~  512 (530)
T 1wa5_B          472 ENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE  512 (530)
T ss_dssp             HHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence            35667889999999999999999999999999999988653

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=2e-38  Score=334.58  Aligned_cols=449  Identities=14%  Similarity=0.066  Sum_probs=364.5

Q ss_pred             HhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhc-CChhhHHHHHHHHHHHhhh
Q 008827           74 FDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRNA  151 (552)
Q Consensus        74 ~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~vr~~A~~~L~~l~~~  151 (552)
                      ...|+++.|+.+|++ ++.+|..|+.+|++++.+++.. ..+..  ..+.++.+++++++ +++.+|..|+.+|.+++..
T Consensus        14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~-~~~~~--~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~   90 (529)
T 1jdh_A           14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMR--SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH   90 (529)
T ss_dssp             ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH-HHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred             hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccH-HHHHh--CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            557899999999996 6799999999999999765433 33322  24789999998875 5899999999999999875


Q ss_pred             CCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHH
Q 008827          152 SPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLA  230 (552)
Q Consensus       152 ~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~a  230 (552)
                      ..  .+..+...|++|.|++++++ ++.++..|+++|.+++.+++..+..+.+.|++|.|++++.++  ++.++..+..+
T Consensus        91 ~~--~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~~  166 (529)
T 1jdh_A           91 RE--GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDC  166 (529)
T ss_dssp             HH--HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHH
T ss_pred             ch--hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHH
Confidence            32  46667888999999999984 567899999999999988777777788999999999999875  47888999999


Q ss_pred             HHHhhcCChhHHHHHHhcccHHHHHHhcCCC-CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHH
Q 008827          231 LADMCSKLECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQ  309 (552)
Q Consensus       231 L~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~  309 (552)
                      |.+++..+++.+..+.+.|+++.++.+++++ +...+..++.+|++++.+ +..+.. +.+.|+++.|+.++.+++++++
T Consensus       167 L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~-~~~~g~~~~L~~ll~~~~~~~~  244 (529)
T 1jdh_A          167 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPA-IVEAGGMQALGLHLTDPSQRLV  244 (529)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHH-HHHTTHHHHHHTTTTSSCHHHH
T ss_pred             HHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHH-HHHCCCHHHHHHHHhCCChHHH
Confidence            9999988889999999999999999999865 456777889999999976 444555 7889999999999999999999


Q ss_pred             HHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC-
Q 008827          310 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-  388 (552)
Q Consensus       310 ~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~-  388 (552)
                      ..++++|.|++.+.+..   ....|+++.|+++++++++.++..++++|++++.+ +++.+..+.+.++++.+++++.+ 
T Consensus       245 ~~a~~~L~~l~~~~~~~---~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~v~~L~~ll~~~  320 (529)
T 1jdh_A          245 QNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRA  320 (529)
T ss_dssp             HHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT-CHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCChhh---HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHHcc
Confidence            99999999999765432   12347899999999999999999999999999874 46788999999999999999975 


Q ss_pred             -CChhHHHHHHHHHHHhhcCCcch---HHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHh
Q 008827          389 -PEPSVQEQALALVRNLVDGRINS---VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQL  464 (552)
Q Consensus       389 -~~~~v~~~a~~~L~~l~~~~~~~---~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~  464 (552)
                       ++++++..++++|+|++.++++.   ...+...+  .++.+.++|.+..++.++..++|+|+|++.+++ .+..+++  
T Consensus       321 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~--~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~--  395 (529)
T 1jdh_A          321 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY--GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLRE--  395 (529)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT--CHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHH--
T ss_pred             CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcC--ChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHH--
Confidence             34799999999999998876542   34566666  689999999984446999999999999998655 4566665  


Q ss_pred             hHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCC------------------CHHHHHHHHHCCcHHHHHhhh
Q 008827          465 LLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPG------------------SSGRLVKLHDAGIVSHVKNMV  526 (552)
Q Consensus       465 ~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~------------------~~~~~~~l~~~g~~~~L~~ll  526 (552)
                           .|+++.|+.+|+++++.+|+.|+|+++|.+.. +++                  ..+....+.+.|++++|++++
T Consensus       396 -----~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~-~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll  469 (529)
T 1jdh_A          396 -----QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV-EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL  469 (529)
T ss_dssp             -----TTHHHHHHHHHHHHHHHHC-----------CB-TTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGG
T ss_pred             -----cCCHHHHHHHHHHHhHHHHHHHhcccCchhhh-ccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHH
Confidence                 79999999999998999999888888872110 111                  234456789999999999999


Q ss_pred             cCCCccHHHHHHHHHHHHhh
Q 008827          527 NDPCLDVKLRVKTALEQFNS  546 (552)
Q Consensus       527 ~~~~~~v~~~a~~al~~~~~  546 (552)
                      .++++++++.+.++|.++..
T Consensus       470 ~~~~~~v~~~a~~~l~~l~~  489 (529)
T 1jdh_A          470 YSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             GCSCHHHHHHHHHHHHHHTT
T ss_pred             cCCchHHHHHHHHHHHHHhc
Confidence            99999999999999998763

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.8e-37  Score=334.10  Aligned_cols=492  Identities=12%  Similarity=0.098  Sum_probs=400.1

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCCCCCCccccc-ccchHHHHHhhcCC-CCcchHHHHHHHHhhcCChhhHHHHHhcCchHH
Q 008827            4 LKSYMEVVDAGARSLKMIYQSKMAPKYDFLQ-EENMEFLLSLLNNE-SENVSGLGASIISHSCKTSLEQKLLFDAGVLKR   81 (552)
Q Consensus         4 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~-~~~i~~l~~ll~~~-~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~   81 (552)
                      ..+++.+...|+.+|.+++...... ..++. .+.++.|+++|.+. ++.++..++.+|.+++..++++..+.+.|+++.
T Consensus        24 ~~~~~~vr~~A~~~L~~La~~~~~~-~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~  102 (644)
T 2z6h_A           24 NDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPA  102 (644)
T ss_dssp             TCSCHHHHHHHHHHHHHHHTSTTHH-HHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHCCChhH-HHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHH
Confidence            4578899999999999998776533 34443 47899999999864 788999999999999999889999999999999


Q ss_pred             HHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhh
Q 008827           82 LTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVG  160 (552)
Q Consensus        82 L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~  160 (552)
                      |+.+|++ ++.++..|+.+|.+++..++.....+.+   .+.++.++.+++++++.++..++.+|.+++...+ ..+..+
T Consensus       103 Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~---~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~-~~~~~i  178 (644)
T 2z6h_A          103 LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL---AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ-ESKLII  178 (644)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHH---TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHH---CCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCc-HHHHHH
Confidence            9999997 6799999999999999876555444432   6889999999999999999999999999997433 245667


Q ss_pred             hHHhHHHHHHHhcCCC--CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCC
Q 008827          161 IKTKLINNLLELLDDP--GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL  238 (552)
Q Consensus       161 ~~~g~i~~Lv~ll~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~  238 (552)
                      ...|+++.|++++.+.  ..++..++.+|.+++. ++..+..+++.|+++.|++++.+.  ++.++..++++|.+++...
T Consensus       179 ~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~  255 (644)
T 2z6h_A          179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAA  255 (644)
T ss_dssp             HHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCS--CHHHHHHHHHHHHHHGGGC
T ss_pred             HHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcc
Confidence            8889999999999844  3567788999999985 456678888999999999998876  4889999999999999754


Q ss_pred             hhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC-C-CHHHHHHHHHHH
Q 008827          239 ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-T-STAVQVAALGAI  316 (552)
Q Consensus       239 ~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~-~~~v~~~a~~aL  316 (552)
                      +..   ....+++|.|+.+++++++.++..++++|++|+......+.. +.+.|+++.|+.+|.+ + .++++..|+++|
T Consensus       256 ~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~-v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL  331 (644)
T 2z6h_A          256 TKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM-VCQVGGIEALVRTVLRAGDREDITEPAICAL  331 (644)
T ss_dssp             TTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH-HHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            321   223478999999999999999999999999998875444555 7889999999999985 3 389999999999


Q ss_pred             HHhhcCCc---hhHHHHHhhCcHHHHHHhhcCCC-HHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCC--
Q 008827          317 SNIVVDFT---TRRSTFIRLGGVKLLVQLSKSMD-STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE--  390 (552)
Q Consensus       317 ~nl~~~~~---~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~--  390 (552)
                      +|++...+   ..+..+.+.|+++.|++++.+++ +.++..++|+|+|++.+  ++.+..+.+.++++.|++++.+.+  
T Consensus       332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~  409 (644)
T 2z6h_A          332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQD  409 (644)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchh
Confidence            99997543   23445788999999999999875 69999999999999874  456788889999999999997633  


Q ss_pred             --------------------hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhc
Q 008827          391 --------------------PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVA  450 (552)
Q Consensus       391 --------------------~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la  450 (552)
                                          .+++..++.+|++++... .....+.+.+  +++.|+++|.+ ++++++..++++|.+++
T Consensus       410 vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~-~~~~~l~~~~--~i~~Lv~lL~~-~~~~v~~~a~~aL~~l~  485 (644)
T 2z6h_A          410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV-HNRIVIRGLN--TIPLFVQLLYS-PIENIQRVAAGVLCELA  485 (644)
T ss_dssp             HTTC----------CCSSCHHHHHHHHHHHHHHHTTSH-HHHHHHHHTT--CHHHHHHHTTC-SCHHHHHHHHHHHHHHH
T ss_pred             hhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH-HHHHHHHhCC--cHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Confidence                                456778888888888653 3444555556  78999999988 88999999999999998


Q ss_pred             CCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcC
Q 008827          451 TGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVND  528 (552)
Q Consensus       451 ~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~  528 (552)
                      .. +..+..+.+       .|+++.|+.+++++++.+|..|+++|.+++..   ......+.+    .++.+..+..+
T Consensus       486 ~~-~~~~~~i~~-------~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~---~~~~~~~~~----~~~il~~~~~~  548 (644)
T 2z6h_A          486 QD-KEAAEAIEA-------EGATAPLTELLHSRNEGVATYAAAVLFRMSED---KPQDYKKRL----SVELTSSLFRT  548 (644)
T ss_dssp             TS-HHHHHHHHH-------TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTT---SCHHHHHHH----HHHHHHHHSCC
T ss_pred             cC-HHHHHHHHH-------cCChhHHHHHHcCCCHHHHHHHHHHHHHHhcc---CcHhhhccc----chHHHHHHHhC
Confidence            64 445555544       88999999999999999999999999999962   333333332    25666666653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=5e-37  Score=317.05  Aligned_cols=413  Identities=16%  Similarity=0.185  Sum_probs=353.6

Q ss_pred             cHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHH-hHHHHHHHhcCC--CCchhchHHHHHHHhhcCCHHHH
Q 008827          122 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKT-KLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQ  198 (552)
Q Consensus       122 ~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~-g~i~~Lv~ll~~--~~~v~~~a~~~L~~l~~~~~~~~  198 (552)
                      .++.+++.++++++.+|..|+.+|..+.........+..+.. |++|.|++++++  ++.++..|+++|.+++..+++..
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            378899999999999999999999998653222223445566 999999999984  46789999999999999888877


Q ss_pred             HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC-CCHHHHHHHHHHHHHhh
Q 008827          199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH-DSSDVRSAACMCLRSVS  277 (552)
Q Consensus       199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~-~~~~v~~~a~~~L~~ls  277 (552)
                      +.+++.|+++.|+++|.++  ++.+++.|+++|++++.+++..+..+.+.|++|.++.++++ .++.++..++++|++++
T Consensus       101 ~~~~~~~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~  178 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC  178 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            7788899999999999875  48899999999999999888889999999999999999995 78999999999999999


Q ss_pred             ccc-ccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHH
Q 008827          278 RSI-KNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR  356 (552)
Q Consensus       278 ~~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~  356 (552)
                      ... +..... + ..+++|.|+.++.+++++++..|+++|++++......+..+.+.|+++.|++++.++++.++..+++
T Consensus       179 ~~~~~~~~~~-~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  256 (450)
T 2jdq_A          179 RGKSPPPEFA-K-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR  256 (450)
T ss_dssp             CCSSSCCCGG-G-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CCCCCCCCHH-H-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHH
Confidence            764 232323 3 3799999999999999999999999999999877777778888999999999999999999999999


Q ss_pred             HHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCch
Q 008827          357 ALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA  436 (552)
Q Consensus       357 aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~  436 (552)
                      +|++++.+. +.....+.+.++++.+++++.++++.++..++++|++++.+.++..+.+++.+  +++.+..+|.+ +++
T Consensus       257 ~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~~l~~-~~~  332 (450)
T 2jdq_A          257 AVGNIVTGD-DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDAN--IFPALISILQT-AEF  332 (450)
T ss_dssp             HHHHHTTSC-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHHHHH-SCH
T ss_pred             HHHHHhhCC-hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC--CHHHHHHHHhc-CCH
Confidence            999998743 45667788889999999999999999999999999999998877778888776  89999999988 889


Q ss_pred             hHHHHHHHHHHhhcCC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCC-------CCHH
Q 008827          437 EIEIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSP-------GSSG  508 (552)
Q Consensus       437 ~v~~~a~~~L~~la~~-~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~-------~~~~  508 (552)
                      .++..++|+|+|++.+ ++...+.+++       .|+++.|+.+++++++.++..|+++|.+++.....       ....
T Consensus       333 ~v~~~a~~~L~~l~~~~~~~~~~~l~~-------~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~  405 (450)
T 2jdq_A          333 RTRKEAAWAITNATSGGSAEQIKYLVE-------LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINP  405 (450)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHH-------HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHH-------CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhH
Confidence            9999999999999974 5556666665       79999999999999999999999999999851100       0113


Q ss_pred             HHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhcC
Q 008827          509 RLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD  549 (552)
Q Consensus       509 ~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~~  549 (552)
                      ....+.+.|+++.|..+.++++.+++++|..+|.++....+
T Consensus       406 ~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  446 (450)
T 2jdq_A          406 YCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED  446 (450)
T ss_dssp             HHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred             HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence            45678889999999999988889999999999999886543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=3.9e-38  Score=329.13  Aligned_cols=369  Identities=15%  Similarity=0.168  Sum_probs=325.3

Q ss_pred             HHHHHHHhcC-CCCchhchHHHHHHHhhcC--CHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH
Q 008827          165 LINNLLELLD-DPGRVGDEASFAFSSLIAE--KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC  241 (552)
Q Consensus       165 ~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~  241 (552)
                      .++.+++.+. ++.+.+..|+..+.++.+.  +|.. ..+++.|+||+|+++|+.. .++.++..|+++|++++..+++.
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi-~~ii~~G~ip~LV~lL~~~-~~~~lq~~Aa~aL~nias~~~e~  135 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPI-DNIIRAGLIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQ  135 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCH-HHHHHTTHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchH-HHHHHCCCHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHH
Confidence            4788888888 5678899999999988754  3333 5678999999999999866 35889999999999999988899


Q ss_pred             HHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCC-----HHHHHHHHHHH
Q 008827          242 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS-----TAVQVAALGAI  316 (552)
Q Consensus       242 ~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~-----~~v~~~a~~aL  316 (552)
                      ++.+++.|++|.|+.+|++++..++..|+++|++++...+..+.. +.+.|++++|+.++.+++     ..++..+++++
T Consensus       136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~-v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L  214 (510)
T 3ul1_B          136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL-VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL  214 (510)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH-HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999875666655 789999999999998653     46788999999


Q ss_pred             HHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHH
Q 008827          317 SNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQ  396 (552)
Q Consensus       317 ~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~  396 (552)
                      .|++.+...........|+++.|+++++++++.++..++|+|.+++.+ +++....+.+.|+++.|++++.++++.++..
T Consensus       215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  293 (510)
T 3ul1_B          215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTP  293 (510)
T ss_dssp             HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred             HHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-hhhhHHHHHhcccchhhhhhhcCCChhhhhH
Confidence            999986655444455578999999999999999999999999999874 4456677888999999999999999999999


Q ss_pred             HHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHH
Q 008827          397 ALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCI  476 (552)
Q Consensus       397 a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~L  476 (552)
                      ++++|+|++.+++.....+++.+  +++.|..+|.+ ++++++..++|+|+|++.+++.++..+++       .|+++.|
T Consensus       294 al~aL~nl~~~~~~~~~~i~~~g--~l~~L~~LL~~-~~~~v~~~A~~aL~nl~a~~~~~~~~v~~-------~g~i~~L  363 (510)
T 3ul1_B          294 ALRAIGNIVTGTDEQTQKVIDAG--ALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVN-------HGLVPFL  363 (510)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTT--GGGGCC-CTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHH-------TTHHHHH
T ss_pred             HHHHHHHhhcCCHHHHHHHhhcc--chHHHHHHhcC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHh-------cCCHHHH
Confidence            99999999999888888888887  68888888887 88999999999999999999888888876       8999999


Q ss_pred             HHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhcCC
Q 008827          477 IKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDS  550 (552)
Q Consensus       477 v~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~~~  550 (552)
                      +.+|++++..+|++|+|+|+|++.   +++.++...+.+.|++++|+++++++++++...+.++|.+|.+.+++
T Consensus       364 v~lL~~~~~~v~~~Aa~aL~Nl~~---~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~  434 (510)
T 3ul1_B          364 VGVLSKADFKTQKEAAWAITNYTS---GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK  434 (510)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHHHHH---HCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHc---cCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh
Confidence            999999999999999999999995   46788999999999999999999998999999999999999987664

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=3.8e-37  Score=336.63  Aligned_cols=477  Identities=14%  Similarity=0.080  Sum_probs=381.9

Q ss_pred             cchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhh
Q 008827           36 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF  114 (552)
Q Consensus        36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~  114 (552)
                      ..++.++..|.++++.++..++..+...     ++..+ ..|+++.|+.+|.+ +..+|..|+.+|++|+...+.. ..+
T Consensus       115 ~~i~~lv~~L~~~~~~~r~~a~~~l~~~-----~~~~i-~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~-~~i  187 (780)
T 2z6g_A          115 SAHPTNVQRLAEPSQMLKHAVVNLINYQ-----DDAEL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAI  187 (780)
T ss_dssp             -----------CCSCHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHH-HHH
T ss_pred             ccHHHHHHHhcCccHHHHHHHHHHHHhh-----hHHHH-HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhH-HHH
Confidence            3578899999998888888888887744     23333 38999999999987 6789999999999999865433 333


Q ss_pred             ccccCCccHHHHHHHHhc-CChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhc
Q 008827          115 VGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIA  192 (552)
Q Consensus       115 ~~~~~~~~l~~l~~ll~~-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~  192 (552)
                      ..  ..+.++.++.++++ +++.+|..|+.+|.+++....  .+..+...|++|.|+++|++ ++.++..|+++|.+++.
T Consensus       188 ~~--~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~--~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~  263 (780)
T 2z6g_A          188 MR--SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE--GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLL  263 (780)
T ss_dssp             TT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHH--HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             Hh--ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch--hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            32  24689999998875 499999999999999887532  35567788999999999994 56799999999999999


Q ss_pred             CCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCH-HHHHHHHH
Q 008827          193 EKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS-DVRSAACM  271 (552)
Q Consensus       193 ~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~-~v~~~a~~  271 (552)
                      +.+..++.+.+.|+++.|+++|.+.  +..++..++.+|..++..+++.+..+.+.|+++.++.++++++. ..+..++.
T Consensus       264 ~~~~~~~~v~~~g~v~~Lv~lL~~~--~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~  341 (780)
T 2z6g_A          264 HQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR  341 (780)
T ss_dssp             HSTTHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             CChhhHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            8777778788899999999999875  47888999999999998788899999999999999999997654 56678899


Q ss_pred             HHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHH
Q 008827          272 CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIR  351 (552)
Q Consensus       272 ~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~  351 (552)
                      +|.+++.+ ...+.. +.+.|+++.|+.++.+.+++++..|+++|.+++......   ....++++.|++++++.++.+|
T Consensus       342 aL~~Ls~~-~~~~~~-i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr  416 (780)
T 2z6g_A          342 VLKVLSVC-SSNKPA-IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVV  416 (780)
T ss_dssp             HHHHHHTS-TTHHHH-HHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHhhcC-hHHHHH-HHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHH
Confidence            99999976 444545 788999999999999999999999999999999765431   1234789999999999999999


Q ss_pred             HHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC-CC-hhHHHHHHHHHHHhhcCCcch---HHHHHhhcCchHHHH
Q 008827          352 LNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-PE-PSVQEQALALVRNLVDGRINS---VEYIFAEDGIILDAV  426 (552)
Q Consensus       352 ~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~-~~-~~v~~~a~~~L~~l~~~~~~~---~~~i~~~~~~~~~~l  426 (552)
                      ..|+++|++++.+ +++.+..+.+.++++.|++++.+ ++ ..++..++++|+|++..+++.   ...+...+  .++.|
T Consensus       417 ~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~--~l~~L  493 (780)
T 2z6g_A          417 TCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY--GLPVV  493 (780)
T ss_dssp             HHHHHHHHHHTSS-CHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTT--CHHHH
T ss_pred             HHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcC--CHHHH
Confidence            9999999999874 45788889999999999999975 33 489999999999998765542   23555555  68999


Q ss_pred             HHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChh--------------------
Q 008827          427 GRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSR--------------------  486 (552)
Q Consensus       427 ~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~--------------------  486 (552)
                      .++|.+...+.++..++|+|+|++.+++ .+..+.+       .|+++.|+.+|.+++..                    
T Consensus       494 ~~lL~~~~~~~v~~~A~~aL~nLa~~~~-~~~~i~~-------~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~  565 (780)
T 2z6g_A          494 VKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLRE-------QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM  565 (780)
T ss_dssp             HHTTSTTCCHHHHHHHHHHHHHHHSSHH-HHHHHHH-------TTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCH
T ss_pred             HHHhcCCChHHHHHHHHHHHHHHhcCHH-HHHHHHH-------CCCHHHHHHHHHhcchhHHHHHhhccccchhhcccCh
Confidence            9999884446999999999999998654 4555655       79999999999876544                    


Q ss_pred             --HHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhh
Q 008827          487 --LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  546 (552)
Q Consensus       487 --~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~  546 (552)
                        ++..++.+|.+++.     ..+....+.+.|++++|++++.+++++++..|..+|.++..
T Consensus       566 ~~v~~~a~~aL~~La~-----~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~  622 (780)
T 2z6g_A          566 EEIVEACTGALHILAR-----DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  622 (780)
T ss_dssp             HHHHHHHHHHHHHHTT-----SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhc-----ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence              44556666666663     34556678899999999999999999999999999988753

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=4e-37  Score=323.31  Aligned_cols=370  Identities=15%  Similarity=0.167  Sum_probs=325.2

Q ss_pred             HHHHHHHhcC-CCCchhchHHHHHHHhhcCCHH-HHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHH
Q 008827          165 LINNLLELLD-DPGRVGDEASFAFSSLIAEKED-MQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR  242 (552)
Q Consensus       165 ~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~  242 (552)
                      .++.+++.+. ++.+.+..|+..+.++.+.+.. ....+++.|++|.|+++|... .++.++..|+++|++++.++++.+
T Consensus        77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~-~~~~~q~~Aa~aL~nia~~~~~~~  155 (529)
T 3tpo_A           77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQT  155 (529)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHHH
Confidence            4677888877 5667888999999887654321 235678999999999999766 368899999999999999888888


Q ss_pred             HHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCC-----HHHHHHHHHHHH
Q 008827          243 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS-----TAVQVAALGAIS  317 (552)
Q Consensus       243 ~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~-----~~v~~~a~~aL~  317 (552)
                      ..+++.|++|.|+.+|++++..++..|+++|++++...+..+.. +.+.|++++|+.+|..++     ..++..++|++.
T Consensus       156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~-i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~  234 (529)
T 3tpo_A          156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDL-VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  234 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHH-HHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999875666666 789999999999997543     467889999999


Q ss_pred             HhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHH
Q 008827          318 NIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQA  397 (552)
Q Consensus       318 nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a  397 (552)
                      |++.+..+........|++|.|++++.++++.++..++|+|.+++.+ +++....+.+.|+++.|+.++.++++.++..+
T Consensus       235 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a  313 (529)
T 3tpo_A          235 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPA  313 (529)
T ss_dssp             HHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred             HHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh-hhhhHHHHHhccchHHHHHHhcCCChhHHHHH
Confidence            99987655444455578999999999999999999999999999874 45667778899999999999999999999999


Q ss_pred             HHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHH
Q 008827          398 LALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCII  477 (552)
Q Consensus       398 ~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv  477 (552)
                      +++|+|++.+++.....++..+  +++.|..+|.+ ++++++..++|+|+|++.+++.++..+++       .|+++.|+
T Consensus       314 ~~aL~nl~~~~~~~~~~i~~~g--~l~~L~~LL~~-~~~~i~~~a~~aL~nl~~~~~~~~~~v~~-------~g~i~~Lv  383 (529)
T 3tpo_A          314 LRAIGNIVTGTDEQTQKVIDAG--ALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVN-------HGLVPFLV  383 (529)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTT--GGGGHHHHTTC-SSHHHHHHHHHHHHHHHTSCHHHHHHHHH-------TTHHHHHH
T ss_pred             HHHHHHHHccchHHHHHHhhcc--cHHHHHHHHcC-CCHHHHHHHHHHHHHHhcccHHHHHHHHh-------cCcHHHHH
Confidence            9999999998888888888887  78999999988 89999999999999999999888888876       89999999


Q ss_pred             HhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhcCC
Q 008827          478 KFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDS  550 (552)
Q Consensus       478 ~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~~~  550 (552)
                      .+|++++..++..|+|+|+|++.   +++.++...+.+.|++++|+++++++++++...+.+||.+|.+.+++
T Consensus       384 ~lL~~~~~~v~~~A~~aL~nl~~---~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~  453 (529)
T 3tpo_A          384 GVLSKADFKTQKAAAWAITNYTS---GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK  453 (529)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHHH---HSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHc---CCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh
Confidence            99999999999999999999995   46788999999999999999999998999999999999999987654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=7.3e-35  Score=307.04  Aligned_cols=407  Identities=14%  Similarity=0.163  Sum_probs=346.8

Q ss_pred             cCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCCh-hhhhhhccccCCccHHHHHHHHhcCC-hhhHHHHHHHHHHHhhhC
Q 008827           76 AGVLKRLTSLLGG-SLIQRDASLESIATIFKNNP-EVVSQFVGPDTGRTLSCIIEIVKDRF-ARTRLLASLCLIVIRNAS  152 (552)
Q Consensus        76 ~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~~~~l~~l~~ll~~~~-~~vr~~A~~~L~~l~~~~  152 (552)
                      ...++.|+..|.+ ++.+|..|+.+|++++...+ .....+.   ..+.++.++.++++++ +.+|..|+++|.+++...
T Consensus        73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~---~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~  149 (528)
T 4b8j_A           73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVI---QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT  149 (528)
T ss_dssp             --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHH---HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHH---HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence            3458999999987 67899999999999975543 2223333   2689999999999887 999999999999999854


Q ss_pred             CCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHH
Q 008827          153 PCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLAL  231 (552)
Q Consensus       153 ~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL  231 (552)
                      +. ....++..|++|.|+++|.+ ++.++..|+++|++++.+++.++..+.+.|+++.|+.+|... .++.++..++++|
T Consensus       150 ~~-~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L  227 (528)
T 4b8j_A          150 SE-NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTL  227 (528)
T ss_dssp             HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHH
T ss_pred             HH-HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHH
Confidence            43 45667788999999999984 568999999999999999999888899999999999988544 3588999999999


Q ss_pred             HHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHH
Q 008827          232 ADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVA  311 (552)
Q Consensus       232 ~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~  311 (552)
                      .+++...+.. ......|++|.|+.++.++++.++..++++|.+++...+..... +.+.|+++.|+.+|.++++.++..
T Consensus       228 ~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~v~~~  305 (528)
T 4b8j_A          228 SNFCRGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQA-VIEAGVCPRLVELLLHPSPSVLIP  305 (528)
T ss_dssp             HHHHCSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHH-HHHTTCHHHHHHHTTCSCHHHHHH
T ss_pred             HHHHcCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH-HHHcCHHHHHHHHHcCCChhHHHH
Confidence            9999865333 23445799999999999999999999999999999774433334 678899999999999999999999


Q ss_pred             HHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCC
Q 008827          312 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE  390 (552)
Q Consensus       312 a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~  390 (552)
                      |+++|+|++.+.+...+.+++.|+++.|+.++.++ ++.++..|+|+|+|++.+ +++....+++.++++.|++++.+.+
T Consensus       306 a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~  384 (528)
T 4b8j_A          306 ALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAE  384 (528)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCC
Confidence            99999999998888888899999999999999998 999999999999999874 5567778888999999999999999


Q ss_pred             hhHHHHHHHHHHHhhcC-CcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChh-----------hHH
Q 008827          391 PSVQEQALALVRNLVDG-RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES-----------HKE  458 (552)
Q Consensus       391 ~~v~~~a~~~L~~l~~~-~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~-----------~~~  458 (552)
                      ++++..|+++|+|++.+ .++...++++.+  +++.|..+|.+ ++++++..++++|.++....+.           ...
T Consensus       385 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~--~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~  461 (528)
T 4b8j_A          385 FDIKKEAAWAISNATSGGSHDQIKYLVSEG--CIKPLCDLLIC-PDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQ  461 (528)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHTT--CHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHCC--CHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHH
Confidence            99999999999999876 667778888777  79999999988 8999999999999999863322           233


Q ss_pred             HHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          459 AVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       459 ~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      .+.       +.|+++.+..+..+++.+++..|.+++.++..
T Consensus       462 ~i~-------~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~  496 (528)
T 4b8j_A          462 MID-------EAEGLEKIENLQSHDNNEIYEKAVKILEAYWM  496 (528)
T ss_dssp             HHH-------HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred             HHH-------HCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence            333       37888999999999999999999999999875

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1.2e-34  Score=299.21  Aligned_cols=404  Identities=15%  Similarity=0.168  Sum_probs=340.1

Q ss_pred             chHHHHHhhcC-CHHHHHHHHHHHHHHhc--CChhhhhhhccccCC-ccHHHHHHHHhcC-ChhhHHHHHHHHHHHhhhC
Q 008827           78 VLKRLTSLLGG-SLIQRDASLESIATIFK--NNPEVVSQFVGPDTG-RTLSCIIEIVKDR-FARTRLLASLCLIVIRNAS  152 (552)
Q Consensus        78 ~i~~L~~lL~~-~~~v~~~al~~L~~l~~--~~~~~~~~~~~~~~~-~~l~~l~~ll~~~-~~~vr~~A~~~L~~l~~~~  152 (552)
                      .++.|++.|++ ++.+|..|+.+|+.++.  .++... .+.   .. +.++.++++++++ ++.+|..|+++|.+++...
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~-~~~---~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~   96 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPID-EVI---STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN   96 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHH-HHH---TSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHH-HHH---HcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence            37889999986 67899999999999764  333332 222   24 7899999999988 8999999999999998754


Q ss_pred             CCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHH
Q 008827          153 PCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLAL  231 (552)
Q Consensus       153 ~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL  231 (552)
                      +. ....++..|++|.|++++++ ++.++..|+++|.+++.+++..+..+++.|+++.|++++.+. .++.++..++++|
T Consensus        97 ~~-~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~v~~~a~~~L  174 (450)
T 2jdq_A           97 SL-QTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NRLTMTRNAVWAL  174 (450)
T ss_dssp             HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CCHHHHHHHHHHH
T ss_pred             HH-HHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence            33 23456678999999999994 568999999999999999988888888999999999999864 3588999999999


Q ss_pred             HHhhcCC-hhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHH
Q 008827          232 ADMCSKL-ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQV  310 (552)
Q Consensus       232 ~~l~~~~-~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~  310 (552)
                      ++++.+. +..+..+ ..+++|.++.+++++++.++..++++|.+++...+..... +...|++|.|+.+|.+++++++.
T Consensus       175 ~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~ll~~~~~~v~~  252 (450)
T 2jdq_A          175 SNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQA-VIDAGVCRRLVELLMHNDYKVVS  252 (450)
T ss_dssp             HHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHH-HHHTTTHHHHHHHTTCSCHHHHH
T ss_pred             HHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHH-HHHcCcHHHHHHHHCCCchhHHH
Confidence            9999754 3332222 3789999999999999999999999999999864433333 67789999999999999999999


Q ss_pred             HHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCC
Q 008827          311 AALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE  390 (552)
Q Consensus       311 ~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~  390 (552)
                      .|+++|++++.+.+...+.+.+.|+++.|+.++.++++.+|..|+++|++++.+ .++....+++.++++.+++++.+++
T Consensus       253 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~l~~~~  331 (450)
T 2jdq_A          253 PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAG-NRAQIQTVIDANIFPALISILQTAE  331 (450)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCC
Confidence            999999999988877777888899999999999999999999999999999874 3566777888899999999999999


Q ss_pred             hhHHHHHHHHHHHhhcC-CcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChh-----------hHH
Q 008827          391 PSVQEQALALVRNLVDG-RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES-----------HKE  458 (552)
Q Consensus       391 ~~v~~~a~~~L~~l~~~-~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~-----------~~~  458 (552)
                      ++++..++++|+|++.+ .++..+.+++.+  +++.|.+++.+ ++++++..++++|.+++...+.           ...
T Consensus       332 ~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~--~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~  408 (450)
T 2jdq_A          332 FRTRKEAAWAITNATSGGSAEQIKYLVELG--CIKPLCDLLTV-MDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCA  408 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHT--CHHHHHHGGGS-SCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHCC--CHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHH
Confidence            99999999999999875 566777788777  79999999988 7899999999999999874332           122


Q ss_pred             HHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          459 AVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       459 ~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      .+.       +.|+++.|..++.+++..++..|..+|.++..
T Consensus       409 ~l~-------~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  443 (450)
T 2jdq_A          409 LIE-------EAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG  443 (450)
T ss_dssp             HHH-------HHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHH-------HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence            332       27888999999999999999999999999885

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=6.1e-35  Score=301.41  Aligned_cols=378  Identities=16%  Similarity=0.134  Sum_probs=309.5

Q ss_pred             CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcC-CHHH
Q 008827          120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAE-KEDM  197 (552)
Q Consensus       120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~-~~~~  197 (552)
                      ...++.++.+++++++.+|..|+.+|.+++.... ..+..++..|+||.|+++|+ .+.+++..|+++|.+|+.+ ++++
T Consensus        47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~-~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND-KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred             cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence            5689999999999999999999999999997543 24667888999999999998 4578999999999999985 6889


Q ss_pred             HHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC------------------
Q 008827          198 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA------------------  259 (552)
Q Consensus       198 ~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~------------------  259 (552)
                      +..++++|+||.|+++|... .+..+++.++.+|++|+. +++++..+++ +++|.|++++.                  
T Consensus       126 k~~I~~~GaIp~LV~LL~s~-~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~  202 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKA-RDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH  202 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHC-CSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred             HHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence            99999999999999999875 247789999999999987 5678888885 67999999871                  


Q ss_pred             CCCHHHHHHHHHHHHHhhcccccccchhhhc-cCcHHHHHHhhcC------CCHHHHHHHHHHHHHhhcCCch-------
Q 008827          260 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMN-ETIVIPLVRLLDD------TSTAVQVAALGAISNIVVDFTT-------  325 (552)
Q Consensus       260 ~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~-~~~i~~Lv~lL~~------~~~~v~~~a~~aL~nl~~~~~~-------  325 (552)
                      ..+..+++.|+++|+||+...++.+.. +.+ .|+++.|+.++++      .+...++.|+++|.||+.....       
T Consensus       203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~-i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~  281 (584)
T 3l6x_A          203 IEWESVLTNTAGCLRNVSSERSEARRK-LRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER  281 (584)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCHHHHHH-HHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred             cccHHHHHHHHHHHHHHhcCCHHHHHH-HHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence            235799999999999999876565666 555 5778899999963      4678999999999999865210       


Q ss_pred             ------------------hHHHHHhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCCh---HhHHHHHHhhcHHHHH
Q 008827          326 ------------------RRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAED---KCKEEIFMELTASLLA  383 (552)
Q Consensus       326 ------------------~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~---~~~~~i~~~~~~~~l~  383 (552)
                                        ..+.+.+.++++.|+.++. +.++.++++|+++|.|++.+..+   ..+..+.+.++++.|+
T Consensus       282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv  361 (584)
T 3l6x_A          282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA  361 (584)
T ss_dssp             --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence                              0111223456788899996 56899999999999999875432   2344555688999999


Q ss_pred             hhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccC-------chhHHHHHHHHHHhhcCCChhh
Q 008827          384 SLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS-------KAEIEIQGMYVLGNVATGKESH  456 (552)
Q Consensus       384 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~-------~~~v~~~a~~~L~~la~~~~~~  456 (552)
                      ++|.+++..+++.++++|+|++.+..  .+.++..+  +++.|+++|.+..       ++++...++++|.|++.+++.+
T Consensus       362 ~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~I~~g--~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~  437 (584)
T 3l6x_A          362 DLLTNEHERVVKAASGALRNLAVDAR--NKELIGKH--AIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA  437 (584)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHTTCS--CHHHHHHH--HHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhCChh--HHHHHHhC--CHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH
Confidence            99999999999999999999998653  34556666  7999999998732       3578999999999999988888


Q ss_pred             HHHHHHHhhHhhhhhhHHHHHHhhcCC--ChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCc
Q 008827          457 KEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGI  518 (552)
Q Consensus       457 ~~~i~~~~~~~~~~~~v~~Lv~lL~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~  518 (552)
                      ++.+++       .|+++.|+.+++++  .+.+++.|+++|++++.     ..+.+..+.+.|.
T Consensus       438 ~~~I~~-------~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~-----~~elr~~~kk~G~  489 (584)
T 3l6x_A          438 AKKLRE-------TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG-----YKELRKPLEKEGW  489 (584)
T ss_dssp             HHHHHH-------TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT-----SHHHHHHHHTTTC
T ss_pred             HHHHHH-------CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc-----CHHHHHHHHHcCC
Confidence            888886       89999999999986  78999999999999984     4555555555553

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=3.8e-35  Score=296.77  Aligned_cols=365  Identities=18%  Similarity=0.155  Sum_probs=291.1

Q ss_pred             HHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCC----------ChhhHHHHHHHHHHh
Q 008827          165 LINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSL----------HPRRFEGILLALADM  234 (552)
Q Consensus       165 ~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~----------~~~~~~~a~~aL~~l  234 (552)
                      .++.|++.+...+.-  +..+.|..+.... ..+..+++.|++|.|+++|...+.          +++++..|+++|.++
T Consensus        33 ~~~~l~~~~~~~~~~--~~~~~ll~~~~~~-~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni  109 (458)
T 3nmz_A           33 MVYSLLSMLGTHDKD--DMSRTLLAMSSSQ-DSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNI  109 (458)
T ss_dssp             ------------CCH--HHHHHHHHHHSST-THHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHH--HHHHHHHHHHcCC-cHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHH
Confidence            356666666522111  4666677776544 455778899999999999986532          268999999999999


Q ss_pred             hcCChhHHHHHHhcccH----------HHHHHhcCCCC--HH-----HHH-------HHHHHHHHhhcccccccchhhhc
Q 008827          235 CSKLECCRSRCLSLQVL----------KLVVDALAHDS--SD-----VRS-------AACMCLRSVSRSIKNLSAGSFMN  290 (552)
Q Consensus       235 ~~~~~~~~~~~~~~~~l----------~~lv~~L~~~~--~~-----v~~-------~a~~~L~~ls~~~~~~~~~~~~~  290 (552)
                      +..+++......+.+++          +.+++++.+..  .+     ++.       .|+++|.+++.+ +..|.. +.+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~-i~~  187 (458)
T 3nmz_A          110 IHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHA-MNE  187 (458)
T ss_dssp             HHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHH-HHH
T ss_pred             HccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHH-HHH
Confidence            99777766666666666          66777787542  12     444       899999999887 566766 899


Q ss_pred             cCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCCchhHHHHHh-hCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827          291 ETIVIPLVRLLDD-----------TSTAVQVAALGAISNIVVDFTTRRSTFIR-LGGVKLLVQLSKSMDSTIRLNALRAL  358 (552)
Q Consensus       291 ~~~i~~Lv~lL~~-----------~~~~v~~~a~~aL~nl~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~aL  358 (552)
                      .|++++|+.+|..           .++.++..|+|+|.|++.+.+..+..+.. .|++|.|+++|.+++++++..|+|+|
T Consensus       188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL  267 (458)
T 3nmz_A          188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL  267 (458)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence            9999999999941           35789999999999999887767766654 46699999999999999999999999


Q ss_pred             HHhcccCChHhHHHHHHhhcHHHHHhhh-cCCChhHHHHHHHHHHHhhcCCcchHHHHH-hhcCchHHHHHHHhcccCch
Q 008827          359 RNLIFLAEDKCKEEIFMELTASLLASLI-CDPEPSVQEQALALVRNLVDGRINSVEYIF-AEDGIILDAVGRQLRIASKA  436 (552)
Q Consensus       359 ~~l~~~~~~~~~~~i~~~~~~~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~~~~~~~~l~~~L~~~~~~  436 (552)
                      .|++...++++|..+.+.|+++.|+++| .+.++.+++.++.+|+|++.+.++....+. ..|  .++.|+++|.+..+.
T Consensus       268 ~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~G--al~~Lv~LL~~~~~~  345 (458)
T 3nmz_A          268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG--ALAFLVGTLTYRSQT  345 (458)
T ss_dssp             HHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTT--HHHHHHHHTTCCCSS
T ss_pred             HHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcC--cHHHHHHHhcCCCCc
Confidence            9998855567899999999999999974 667899999999999999985544445555 445  799999999873322


Q ss_pred             ---hHHHHHHHHHHhhcC---CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHH
Q 008827          437 ---EIEIQGMYVLGNVAT---GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRL  510 (552)
Q Consensus       437 ---~v~~~a~~~L~~la~---~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~  510 (552)
                         ++++.++|+|.|++.   +++.+++.+++       .|+++.|+.+|++++..++++|+|+|.|++.    ++.+++
T Consensus       346 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-------~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~----~~~~~~  414 (458)
T 3nmz_A          346 NTLAIIESGGGILRNVSSLIATNEDHRQILRE-------NNCLQTLLQHLKSHSLTIVSNACGTLWNLSA----RNPKDQ  414 (458)
T ss_dssp             STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-------TTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS----SCHHHH
T ss_pred             chHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-------cccHHHHHHHHcCCChHHHHHHHHHHHHHHc----CCHHHH
Confidence               589999999999996   77778888876       8999999999999999999999999999995    578889


Q ss_pred             HHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          511 VKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       511 ~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      ..+.+.|++++|+++++++++.+++.|.+||.++...
T Consensus       415 ~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          415 EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             HHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999864

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=1.5e-34  Score=304.57  Aligned_cols=409  Identities=13%  Similarity=0.122  Sum_probs=346.4

Q ss_pred             ccchHHHHHhhcCCCCcchHHHHHHHHhhcCC--hhhHHHHHhcCchHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhh
Q 008827           35 EENMEFLLSLLNNESENVSGLGASIISHSCKT--SLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEV  110 (552)
Q Consensus        35 ~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~--~~~~~~l~~~g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~  110 (552)
                      ...++.++..|+++++.++..|+..|.++...  ...+..+.+.|+++.|+.+|.+  ++.+|..|+.+|++++..+++.
T Consensus        86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~  165 (530)
T 1wa5_B           86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  165 (530)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            46789999999999999999999999998543  3345678889999999999986  5789999999999999887766


Q ss_pred             hhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHH
Q 008827          111 VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSS  189 (552)
Q Consensus       111 ~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~  189 (552)
                      ...+..   .++++.++.+++++++.+|..|+++|.+++...+. ..+.+...|++|.|++++.+ +..++..|+++|++
T Consensus       166 ~~~~~~---~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~  241 (530)
T 1wa5_B          166 TKVVVD---ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD-YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN  241 (530)
T ss_dssp             HHHHHH---TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHH---CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc-chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            555543   68899999999999999999999999999976432 35567778999999999985 45789999999999


Q ss_pred             hhcCC-HHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHH
Q 008827          190 LIAEK-EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSA  268 (552)
Q Consensus       190 l~~~~-~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~  268 (552)
                      ++.+. +.. ......++++.|+++|.++  ++.++..++++|++++...++....+.+.|++|.++.+|.++++.++..
T Consensus       242 L~~~~~~~~-~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~  318 (530)
T 1wa5_B          242 LCRGKKPQP-DWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP  318 (530)
T ss_dssp             HHCCSSSCC-CHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred             HhCCCCCCC-cHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHH
Confidence            99765 322 3345678999999998876  4889999999999999877777788888999999999999999999999


Q ss_pred             HHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCH
Q 008827          269 ACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS  348 (552)
Q Consensus       269 a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~  348 (552)
                      ++++|++++...+..... +.+.|+++.|+.+|.++++.++..|+++|+|++.+.....+.+++.|+++.|+.++.++++
T Consensus       319 a~~~L~~l~~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  397 (530)
T 1wa5_B          319 ALRAVGNIVTGNDLQTQV-VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEY  397 (530)
T ss_dssp             HHHHHHHHTTSCHHHHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHcCCHHHHHH-HHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCH
Confidence            999999999765544444 6778999999999999999999999999999998777777788899999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCh--HhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcc-----------hHHHH
Q 008827          349 TIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN-----------SVEYI  415 (552)
Q Consensus       349 ~v~~~a~~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-----------~~~~i  415 (552)
                      .++..++|+|++++...++  +....+.+.++++.|+.++.++++.++..++++|.+++...+.           ....+
T Consensus       398 ~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l  477 (530)
T 1wa5_B          398 KTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFI  477 (530)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHH
Confidence            9999999999999886555  6778888999999999999999999999999999999864322           22333


Q ss_pred             HhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCCh
Q 008827          416 FAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE  454 (552)
Q Consensus       416 ~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~  454 (552)
                      .+.+  .++.+..++.+ +++.+++.+.++|.++....+
T Consensus       478 ~~~g--~~~~L~~L~~~-~~~~v~~~a~~il~~~~~~~~  513 (530)
T 1wa5_B          478 EKAG--GMEKIFNCQQN-ENDKIYEKAYKIIETYFGEEE  513 (530)
T ss_dssp             HHTT--HHHHHHGGGGC-SCHHHHHHHHHHHHHHSSSCC
T ss_pred             HHcC--cHHHHHHHHcC-CCHHHHHHHHHHHHHHCCccc
Confidence            3444  57888776666 899999999999999886443

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.1e-34  Score=299.60  Aligned_cols=366  Identities=15%  Similarity=0.165  Sum_probs=302.2

Q ss_pred             HHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC-Ch
Q 008827          162 KTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK-LE  239 (552)
Q Consensus       162 ~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-~~  239 (552)
                      ..+.+|.|+++|. .+++++..|+++|.+++..++.++..+++.|+||.|+++|.+++  +.+++.|+++|.+++.. ++
T Consensus        46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~--~~vq~~Aa~AL~nLa~~~~~  123 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPK--KEVHLGACGALKNISFGRDQ  123 (584)
T ss_dssp             CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSS--HHHHHHHHHHHHHHTSSSCH
T ss_pred             ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCC--HHHHHHHHHHHHHHHccCCH
Confidence            4578999999998 45678999999999999989999999999999999999998864  88999999999999984 68


Q ss_pred             hHHHHHHhcccHHHHHHhcCC-CCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc----------------
Q 008827          240 CCRSRCLSLQVLKLVVDALAH-DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD----------------  302 (552)
Q Consensus       240 ~~~~~~~~~~~l~~lv~~L~~-~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~----------------  302 (552)
                      +++..+.+.|++|.|+++|++ .+.++++.++.+|++|+.+ +..+.. +.. +++|+|++++.                
T Consensus       124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~-I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~  200 (584)
T 3l6x_A          124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKME-IVD-HALHALTDEVIIPHSGWEREPNEDCKP  200 (584)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHH-HHH-HTHHHHHHHTHHHHHCCC---------
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHH-HHh-ccHHHHHHHHhcccccccccccccccc
Confidence            899999999999999999996 6889999999999999986 455555 564 57999999871                


Q ss_pred             --CCCHHHHHHHHHHHHHhhcCCchhHHHHHhh-CcHHHHHHhhcC------CCHHHHHHHHHHHHHhcccCChHh----
Q 008827          303 --DTSTAVQVAALGAISNIVVDFTTRRSTFIRL-GGVKLLVQLSKS------MDSTIRLNALRALRNLIFLAEDKC----  369 (552)
Q Consensus       303 --~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~-g~i~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~~~~~----  369 (552)
                        .+++++++.|+++|.||+...+..++.+.+. |+++.|+.++++      .+...+++|+|+|.||++....+.    
T Consensus       201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~  280 (584)
T 3l6x_A          201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE  280 (584)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred             cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence              2368999999999999998877778888885 566899999874      467899999999999987421100    


Q ss_pred             --------------------HHHHHHhhcHHHHHhhhc-CCChhHHHHHHHHHHHhhcCCcc---hHHHHHhhcCchHHH
Q 008827          370 --------------------KEEIFMELTASLLASLIC-DPEPSVQEQALALVRNLVDGRIN---SVEYIFAEDGIILDA  425 (552)
Q Consensus       370 --------------------~~~i~~~~~~~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~---~~~~i~~~~~~~~~~  425 (552)
                                          .+.+.+.++++.++.++. +.++.++++|+++|+|++.++..   .++.++.+.+ .++.
T Consensus       281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~-glp~  359 (584)
T 3l6x_A          281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEK-ALSA  359 (584)
T ss_dssp             C--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHH-HHHH
T ss_pred             hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcC-cHHH
Confidence                                011122345678888995 56899999999999999987632   2333444322 6999


Q ss_pred             HHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC--------ChhHHHHHHHHHHh
Q 008827          426 VGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN--------DSRLRTAAVWAVLN  497 (552)
Q Consensus       426 l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~--------~~~~~~~a~~~l~~  497 (552)
                      |+.+|.+ +++.++..++|+|+|++.+.. .+. ++.       .++++.|+.+|.++        ..++...|+++|.|
T Consensus       360 Lv~LL~s-~~~~v~~~A~~aL~nLs~~~~-~~~-~I~-------~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~N  429 (584)
T 3l6x_A          360 IADLLTN-EHERVVKAASGALRNLAVDAR-NKE-LIG-------KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINE  429 (584)
T ss_dssp             HHHGGGC-SCHHHHHHHHHHHHHHHTTCS-CHH-HHH-------HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHH
T ss_pred             HHHHHcC-CCHHHHHHHHHHHHHHhCChh-HHH-HHH-------hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHH
Confidence            9999988 889999999999999998654 344 445       78999999999986        35788999999999


Q ss_pred             hcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC--CccHHHHHHHHHHHHhhh
Q 008827          498 LTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP--CLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       498 l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~--~~~v~~~a~~al~~~~~~  547 (552)
                      ++.    ++.++.+.+.+.|++++|+++++++  .+.+++.|.++|.++...
T Consensus       430 L~a----~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~  477 (584)
T 3l6x_A          430 VIA----ENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY  477 (584)
T ss_dssp             HHT----TCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred             Hhc----CCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence            985    6788999999999999999999875  678899999999988643

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=2.7e-35  Score=297.79  Aligned_cols=361  Identities=16%  Similarity=0.148  Sum_probs=286.8

Q ss_pred             cHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC--C-----------CchhchHHHHHH
Q 008827          122 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--P-----------GRVGDEASFAFS  188 (552)
Q Consensus       122 ~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~--~-----------~~v~~~a~~~L~  188 (552)
                      .++.+...+.+.++..   ..+.|..+....+  ....+++.|++|.|+++|..  .           ++++.+|+|+|.
T Consensus        33 ~~~~l~~~~~~~~~~~---~~~~ll~~~~~~~--~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~  107 (458)
T 3nmz_A           33 MVYSLLSMLGTHDKDD---MSRTLLAMSSSQD--SCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALH  107 (458)
T ss_dssp             ------------CCHH---HHHHHHHHHSSTT--HHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHH---HHHHHHHHHcCCc--HHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHH
Confidence            4555666666655552   4555555655433  23567889999999999983  2           378999999999


Q ss_pred             HhhcCCHHHHHHHHHhCcH----------HHHHHhhhcCC--CC-h--hhHH-------HHHHHHHHhhcCChhHHHHHH
Q 008827          189 SLIAEKEDMQKLAFEVNGV----------DKLYNHLQKGS--LH-P--RRFE-------GILLALADMCSKLECCRSRCL  246 (552)
Q Consensus       189 ~l~~~~~~~~~~~~~~~~i----------~~L~~~L~~~~--~~-~--~~~~-------~a~~aL~~l~~~~~~~~~~~~  246 (552)
                      |++...++..+...+.+.+          +.+++++....  .+ .  .+++       +|+++|++++. ++++|+.+.
T Consensus       108 ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~  186 (458)
T 3nmz_A          108 NIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMN  186 (458)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHH
T ss_pred             HHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence            9999888777766677776          55666665542  01 0  0333       89999999975 589999999


Q ss_pred             hcccHHHHHHhcCC-----------CCHHHHHHHHHHHHHhhcccccccchhhh-ccCcHHHHHHhhcCCCHHHHHHHHH
Q 008827          247 SLQVLKLVVDALAH-----------DSSDVRSAACMCLRSVSRSIKNLSAGSFM-NETIVIPLVRLLDDTSTAVQVAALG  314 (552)
Q Consensus       247 ~~~~l~~lv~~L~~-----------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~-~~~~i~~Lv~lL~~~~~~v~~~a~~  314 (552)
                      +.|+++.|+.+|..           .++.++..|+++|.+|+...+..+.. +. ..|.+|+|+++|.++++++++.|+|
T Consensus       187 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~-i~~~~GaIp~LV~LL~s~~~~v~~~A~~  265 (458)
T 3nmz_A          187 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT-LCSMKGCMRALVAQLKSESEDLQQVIAS  265 (458)
T ss_dssp             HTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHCHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHH-HHHcCCcHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999999941           34689999999999999875444433 43 4567999999999999999999999


Q ss_pred             HHHHhhcC-CchhHHHHHhhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhcccCChHhHHHHH-HhhcHHHHHhhhcCCCh
Q 008827          315 AISNIVVD-FTTRRSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDKCKEEIF-MELTASLLASLICDPEP  391 (552)
Q Consensus       315 aL~nl~~~-~~~~~~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~-~~~~~~~l~~ll~~~~~  391 (552)
                      +|.||+.+ ...++..+.+.|+++.|+++ +.++++.+++.++.+|.|++.+. .+.+..+. ..|+++.|+++|.+++.
T Consensus       266 aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~-~~nk~~I~~~~Gal~~Lv~LL~~~~~  344 (458)
T 3nmz_A          266 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-TENKADICAVDGALAFLVGTLTYRSQ  344 (458)
T ss_dssp             HHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHC-HHHHHHHHHSTTHHHHHHHHTTCCCS
T ss_pred             HHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-HHHHHHHHHhcCcHHHHHHHhcCCCC
Confidence            99999975 46788899999999999997 45678899999999999998733 35677777 78999999999987654


Q ss_pred             ----hHHHHHHHHHHHhhc---CCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHh
Q 008827          392 ----SVQEQALALVRNLVD---GRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQL  464 (552)
Q Consensus       392 ----~v~~~a~~~L~~l~~---~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~  464 (552)
                          ++++.++++|+|++.   ++++..+.+.+.+  .++.|+.+|.+ ++.++++.|+|+|.|++.++++.+..+++  
T Consensus       345 ~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G--~i~~Lv~LL~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i~~--  419 (458)
T 3nmz_A          345 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENN--CLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWD--  419 (458)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT--HHHHHHHHSSC-SCHHHHHHHHHHHHHHHSSCHHHHHHHHH--
T ss_pred             cchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc--cHHHHHHHHcC-CChHHHHHHHHHHHHHHcCCHHHHHHHHH--
Confidence                499999999999996   6777777777777  79999999988 88899999999999999888888888886  


Q ss_pred             hHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          465 LLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       465 ~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                           .|+++.|+.+|++++..+++.|+|+|.||+.
T Consensus       420 -----~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~  450 (458)
T 3nmz_A          420 -----MGAVSMLKNLIHSKHKMIAMGSAAALRNLMA  450 (458)
T ss_dssp             -----HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred             -----CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence                 8999999999999999999999999999996

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=5.4e-35  Score=300.68  Aligned_cols=363  Identities=15%  Similarity=0.191  Sum_probs=302.1

Q ss_pred             HHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHH
Q 008827          165 LINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRS  243 (552)
Q Consensus       165 ~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~  243 (552)
                      .+|.|+++|+ .+++++..|+++|.+++.+++..+..+.+.|++|.|+++|.++  ++.+++.|+++|.+++.++++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP--NQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS--CHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHHH
Confidence            4788999998 5578999999999999988887777889999999999999875  488999999999999988789999


Q ss_pred             HHHhcccHHHHHHhcC-CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh--------cC--------CCH
Q 008827          244 RCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL--------DD--------TST  306 (552)
Q Consensus       244 ~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL--------~~--------~~~  306 (552)
                      .+++.|++|.|+++|+ ++++++++.++++|++++.. +..+.. +.+ |++|+|+++|        .+        .++
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~-i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~  157 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEE-LIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDP  157 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHH-HHH-HHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHH-HHh-ccHHHHHHHHhccccccccCccchhcccccH
Confidence            9999999999999999 88999999999999999988 566655 777 9999999999        32        356


Q ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHhh-CcHHHHHHhhcC------CCHHHHHHHHHHHHHhcccCC-------------
Q 008827          307 AVQVAALGAISNIVVDFTTRRSTFIRL-GGVKLLVQLSKS------MDSTIRLNALRALRNLIFLAE-------------  366 (552)
Q Consensus       307 ~v~~~a~~aL~nl~~~~~~~~~~~~~~-g~i~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~~-------------  366 (552)
                      +++..|+|+|.|++.+ +..++.+.+. |+++.|+.++++      .+..++++++++|.|+++..+             
T Consensus       158 ~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~  236 (457)
T 1xm9_A          158 EVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN  236 (457)
T ss_dssp             HHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence            7778999999999987 7788888887 999999999985      456788999999999874210             


Q ss_pred             ------------------------------------hHhHHHHHHhhcHHHHHhhhcC-CChhHHHHHHHHHHHhhcCCc
Q 008827          367 ------------------------------------DKCKEEIFMELTASLLASLICD-PEPSVQEQALALVRNLVDGRI  409 (552)
Q Consensus       367 ------------------------------------~~~~~~i~~~~~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~  409 (552)
                                                          ++..+.+++.++++.++.+|.+ .++.+++.|+|+|+|++.++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~  316 (457)
T 1xm9_A          237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG  316 (457)
T ss_dssp             C----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSS
T ss_pred             cccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcC
Confidence                                                0011223445678888898874 568999999999999998765


Q ss_pred             ch---H-HHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCCh
Q 008827          410 NS---V-EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS  485 (552)
Q Consensus       410 ~~---~-~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~  485 (552)
                      ..   + +.++...| .++.|+++|.+ ++++++..++|+|.|++.+. ... .++.       .++++.|+++|.++++
T Consensus       317 ~~~~~~~~~~v~~~~-~l~~Lv~LL~~-~~~~v~~~A~~aL~nls~~~-~~~-~~i~-------~~~i~~Lv~lL~~~~~  385 (457)
T 1xm9_A          317 LMSSGMSQLIGLKEK-GLPQIARLLQS-GNSDVVRSGASLLSNMSRHP-LLH-RVMG-------NQVFPEVTRLLTSHTG  385 (457)
T ss_dssp             SHHHHHHHHHHTTSC-CHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSG-GGH-HHHH-------HHTHHHHHHTTTSCCS
T ss_pred             cchHHHHHHHHHHcC-CchHHHHHHhC-CCHhHHHHHHHHHHHHhcCH-HHH-HHHH-------HhhhHHHHHhccCCCC
Confidence            43   2 34554323 68999999998 89999999999999999854 334 4454       5789999999998754


Q ss_pred             ------hHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC-CccHHHHHHHHHHHHhhhc
Q 008827          486 ------RLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP-CLDVKLRVKTALEQFNSFD  548 (552)
Q Consensus       486 ------~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~-~~~v~~~a~~al~~~~~~~  548 (552)
                            ++...++++|.|+..    +..++...+.+.|++++|++++.++ ++++++.|.+.|.++....
T Consensus       386 ~~~~~~~v~~~~l~~l~ni~~----~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          386 NTSNSEDILSSACYTVRNLMA----SQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHT----TCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             CCCCcHHHHHHHHHHHHHHHh----cCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence                  588899999999985    4567889999999999999999988 8899999999999987543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=1.4e-34  Score=297.56  Aligned_cols=362  Identities=13%  Similarity=0.133  Sum_probs=300.2

Q ss_pred             cHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHH
Q 008827          122 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKL  200 (552)
Q Consensus       122 ~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~  200 (552)
                      .++.++.+++++++.+|..|+.+|.+++..++. .+..++..|++|.|+++|+. ++.++..|+++|.+|+.++++++..
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            578999999999999999999999999865432 34578899999999999984 5678999999999999988999999


Q ss_pred             HHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC--------C--------CCHH
Q 008827          201 AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA--------H--------DSSD  264 (552)
Q Consensus       201 ~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~--------~--------~~~~  264 (552)
                      +++.|++|.|+++|... .++.+++.++++|++++.+ ++.+..+.+ |++|.|+++|.        +        .+..
T Consensus        82 i~~~G~i~~Lv~lL~~~-~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRT-GNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHTTCHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHcCCHHHHHHHHhhC-CCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            99999999999999833 3588999999999999987 678888899 99999999993        2        2456


Q ss_pred             HHHHHHHHHHHhhcccccccchhhhcc-CcHHHHHHhhcC------CCHHHHHHHHHHHHHhhcCC--------------
Q 008827          265 VRSAACMCLRSVSRSIKNLSAGSFMNE-TIVIPLVRLLDD------TSTAVQVAALGAISNIVVDF--------------  323 (552)
Q Consensus       265 v~~~a~~~L~~ls~~~~~~~~~~~~~~-~~i~~Lv~lL~~------~~~~v~~~a~~aL~nl~~~~--------------  323 (552)
                      ++..|+++|++|+.. +..+.. +.+. |++++|+.+|++      .+..+++.|+++|.|++...              
T Consensus       159 v~~~a~~aL~nLs~~-~~~~~~-i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~  236 (457)
T 1xm9_A          159 VFFNATGCLRNLSSA-DAGRQT-MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN  236 (457)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHH-HTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHccC-HHHHHH-HHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence            777999999999987 555555 7776 999999999975      45678899999999986310              


Q ss_pred             ------------------------------------chhHHHHHhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCC
Q 008827          324 ------------------------------------TTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAE  366 (552)
Q Consensus       324 ------------------------------------~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~  366 (552)
                                                          +...+.+.+.|+++.|+.++.+ +++.+++.|+|+|.|++.+..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~  316 (457)
T 1xm9_A          237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG  316 (457)
T ss_dssp             C----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSS
T ss_pred             cccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcC
Confidence                                                0111234456789999999875 468999999999999997554


Q ss_pred             hH---h-HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccC-----chh
Q 008827          367 DK---C-KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS-----KAE  437 (552)
Q Consensus       367 ~~---~-~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~-----~~~  437 (552)
                      +.   . +..+.+.++++.|+++|.+++.+++..|+|+|+|++.+.  ....++..+  +++.|+++|.+..     .++
T Consensus       317 ~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~--~i~~Lv~lL~~~~~~~~~~~~  392 (457)
T 1xm9_A          317 LMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQ--VFPEVTRLLTSHTGNTSNSED  392 (457)
T ss_dssp             SHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHH--THHHHHHTTTSCCSCSTTHHH
T ss_pred             cchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHh--hhHHHHHhccCCCCCCCCcHH
Confidence            32   2 333446899999999999999999999999999998753  456666666  6899999998731     246


Q ss_pred             HHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC-ChhHHHHHHHHHHhhcC
Q 008827          438 IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       438 v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~~~a~~~l~~l~~  500 (552)
                      +...++++|.|+..+++.+...+.+       .|+++.|+.+++++ +.++++.|+++|.++..
T Consensus       393 v~~~~l~~l~ni~~~~~~~~~~i~~-------~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~  449 (457)
T 1xm9_A          393 ILSSACYTVRNLMASQPQLAKQYFS-------SSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHCC-------HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHH-------cCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence            8889999999999888777776664       89999999999999 99999999999999985

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=1.4e-29  Score=248.86  Aligned_cols=272  Identities=19%  Similarity=0.180  Sum_probs=234.5

Q ss_pred             CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCCchhHHHH
Q 008827          262 SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-----------TSTAVQVAALGAISNIVVDFTTRRSTF  330 (552)
Q Consensus       262 ~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-----------~~~~v~~~a~~aL~nl~~~~~~~~~~~  330 (552)
                      +...+..|+++|.+++.+ +..|.. +.+.|++++|+.+|..           .+++++..|+++|.|++.+....+..+
T Consensus        45 ~~~~~~~A~~aL~nls~d-~e~R~~-i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i  122 (354)
T 3nmw_A           45 VEHQICPAVCVLMKLSFD-EEHRHA-MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL  122 (354)
T ss_dssp             GGGTHHHHHHHHHHHHTS-HHHHHH-HHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCC-HHHHHH-HHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            345666899999999988 556666 8999999999999942           247899999999999998877777666


Q ss_pred             Hh-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhh-hcCCChhHHHHHHHHHHHhhcCC
Q 008827          331 IR-LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL-ICDPEPSVQEQALALVRNLVDGR  408 (552)
Q Consensus       331 ~~-~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~  408 (552)
                      .. .|++|.|+++|.++++.+++.|+|+|.|++...++++|..+.+.|+++.|+++ +++.++++++.++++|+|++...
T Consensus       123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence            54 45699999999999999999999999999885456789999999999999997 46788999999999999999866


Q ss_pred             cchHHHHH-hhcCchHHHHHHHhcccCch---hHHHHHHHHHHhhcC---CChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 008827          409 INSVEYIF-AEDGIILDAVGRQLRIASKA---EIEIQGMYVLGNVAT---GKESHKEAVMDQLLLRAENKAQSCIIKFLQ  481 (552)
Q Consensus       409 ~~~~~~i~-~~~~~~~~~l~~~L~~~~~~---~v~~~a~~~L~~la~---~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~  481 (552)
                      ++....+. ..|  .++.|+++|.+..+.   ++++.++++|.|++.   +++..++.+.+       .|+++.|+.+|+
T Consensus       203 ~~nk~~i~~~~G--ai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-------~g~i~~Lv~lL~  273 (354)
T 3nmw_A          203 TENKADICAVDG--ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-------NNCLQTLLQHLK  273 (354)
T ss_dssp             HHHHHHHHHSTT--HHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-------TTHHHHHHHHTT
T ss_pred             hhhhHHHHHhcC--cHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-------cCCHHHHHHHHc
Confidence            55555555 445  799999999873222   599999999999996   67777887775       899999999999


Q ss_pred             CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhc
Q 008827          482 SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  548 (552)
Q Consensus       482 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~  548 (552)
                      +++..++++|+|+|.|++.    ++.++++.+.+.|++++|+++++++++.+++.|.+||.++....
T Consensus       274 ~~~~~v~~~A~~aL~nLa~----~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          274 SHSLTIVSNACGTLWNLSA----RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             CSCHHHHHHHHHHHHHHTS----SCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             CCChHHHHHHHHHHHHHhC----CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999995    57888999999999999999999999999999999999998764

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=2.3e-29  Score=247.27  Aligned_cols=266  Identities=18%  Similarity=0.168  Sum_probs=231.9

Q ss_pred             hhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC-----------CCHHHHHHHHHHHHHhhcccccccchhhh-
Q 008827          222 RRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH-----------DSSDVRSAACMCLRSVSRSIKNLSAGSFM-  289 (552)
Q Consensus       222 ~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~-----------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~-  289 (552)
                      ..+..|+++|++++.+ +++|+.+++.|+++.|+.+|..           .++.++..|+++|.+|+...+..+.. +. 
T Consensus        47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~-i~~  124 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT-LCS  124 (354)
T ss_dssp             GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH-HHH
Confidence            4567899999999975 7899999999999999999952           24789999999999999875544444 43 


Q ss_pred             ccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CchhHHHHHhhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhcccCCh
Q 008827          290 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVD-FTTRRSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAED  367 (552)
Q Consensus       290 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~-~~~~~~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~  367 (552)
                      ..|++|+|+++|+++++++++.|+++|.||+.+ .+.+|..+.+.|+++.|+++ ++++++.+++.++++|.|++... +
T Consensus       125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~  203 (354)
T 3nmw_A          125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-T  203 (354)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC-H
T ss_pred             cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC-h
Confidence            456799999999999999999999999999975 46778899999999999997 56778999999999999998733 4


Q ss_pred             HhHHHHH-HhhcHHHHHhhhcCCCh----hHHHHHHHHHHHhhc---CCcchHHHHHhhcCchHHHHHHHhcccCchhHH
Q 008827          368 KCKEEIF-MELTASLLASLICDPEP----SVQEQALALVRNLVD---GRINSVEYIFAEDGIILDAVGRQLRIASKAEIE  439 (552)
Q Consensus       368 ~~~~~i~-~~~~~~~l~~ll~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~  439 (552)
                      +.+..+. ..|+++.|++++.++++    ++++.++++|+|++.   ++++..+.+.+.+  .++.|+++|.+ ++.+++
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g--~i~~Lv~lL~~-~~~~v~  280 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN--CLQTLLQHLKS-HSLTIV  280 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT--HHHHHHHHTTC-SCHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC--CHHHHHHHHcC-CChHHH
Confidence            5677777 78999999999987654    599999999999996   6677777777777  79999999998 889999


Q ss_pred             HHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          440 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       440 ~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      +.|+|+|.|++.+++..++.+++       .|+++.|+++|++++..+++.|+|+|.||+.
T Consensus       281 ~~A~~aL~nLa~~~~~~~~~i~~-------~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~  334 (354)
T 3nmw_A          281 SNACGTLWNLSARNPKDQEALWD-------MGAVSMLKNLIHSKHKMIAMGSAAALRNLMA  334 (354)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHH-------TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHH-------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            99999999999888888888876       8999999999999999999999999999996

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.1e-26  Score=242.75  Aligned_cols=488  Identities=12%  Similarity=0.113  Sum_probs=338.3

Q ss_pred             HHHHHHHHHcCCCCCC--ccc-ccccchHHHHHhhcC-CCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcCC
Q 008827           14 GARSLKMIYQSKMAPK--YDF-LQEENMEFLLSLLNN-ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGS   89 (552)
Q Consensus        14 ~l~~l~~l~~~~~~~~--~~~-~~~~~i~~l~~ll~~-~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~~   89 (552)
                      ++.++..+  +|..|.  ..+ ..++..+.+.+.+.+ .+..+...+...+...|.....|..+. .++++.|.+++++ 
T Consensus       232 ~~~~l~~l--fPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~-~~~~~~L~~~l~~-  307 (778)
T 3opb_A          232 IVKTLSEL--YPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYIT-ENYLQLLERSLNV-  307 (778)
T ss_dssp             HHHHHHHH--TTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHH-HHHHHHHHHHTTS-
T ss_pred             HHHHHHHH--hcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHH-HhHHHHHHHHhcc-
Confidence            34444444  444441  133 377888999988864 445677888999999999888888884 5667999999976 


Q ss_pred             HHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhH-HhHHHH
Q 008827           90 LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK-TKLINN  168 (552)
Q Consensus        90 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~-~g~i~~  168 (552)
                      ..+|..|+..|..+...+......+     ......+.+.+.+++...|..|+..|..++....  .++.++. .|+++.
T Consensus       308 ~~ir~lAavvL~KL~~~~~~~~~si-----~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~--VKe~L~~d~~~L~~  380 (778)
T 3opb_A          308 EDVQIYSALVLVKTWSFTKLTCINL-----KQLSEIFINAISRRIVPKVEMSVEALAYLSLKAS--VKIMIRSNESFTEI  380 (778)
T ss_dssp             GGGHHHHHHHHHHHTGGGTCTTCCH-----HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH--HHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcCcH-----HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH--HHHHHHhCHHHHHH
Confidence            5788899999999876543211111     2334555667777777779999999999987543  3444544 678999


Q ss_pred             HHHhcCC--CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q 008827          169 LLELLDD--PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL  246 (552)
Q Consensus       169 Lv~ll~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~  246 (552)
                      |+++++.  +..+...++.+|.|+..+.+...   .+...+..|-++.....  |....... .+..-....+..+..+.
T Consensus       381 Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~---~e~~~l~~Lk~~A~~~~--p~~~~~d~-~~~~~~~v~~~~~~~l~  454 (778)
T 3opb_A          381 LLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX---XXXXXXXXXXXXXXXXX--PAADKVGA-EKAAKEDILLFNEKYIL  454 (778)
T ss_dssp             HHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC---CCCC--------------------CCT-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHhcCCCcccc---hhhhhhhhhhhhccccC--cccCcccc-cccchHHHHHHHHHHHH
Confidence            9999983  56788999999999998655321   01224444444333221  11100000 01110111122456778


Q ss_pred             hcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHH---HHHHHHHHHHHhhcCC
Q 008827          247 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA---VQVAALGAISNIVVDF  323 (552)
Q Consensus       247 ~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~---v~~~a~~aL~nl~~~~  323 (552)
                      +.|++|.|+.+++++++.+|..++++|.+++.. ...+.. +++.|++++|+.+|.+....   .+..|+.+|.++....
T Consensus       455 eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~-lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~  532 (778)
T 3opb_A          455 RTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQ-LAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT  532 (778)
T ss_dssp             TTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHH-HHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS
T ss_pred             HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHH-HHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999987 555655 88999999999999876443   8999999999998544


Q ss_pred             chhHHHHH---hhCcHHHHHHhhcC-CCH-------------HHHHHHHHHHHHhcccCCh---HhHHHHHHh-hcHHHH
Q 008827          324 TTRRSTFI---RLGGVKLLVQLSKS-MDS-------------TIRLNALRALRNLIFLAED---KCKEEIFME-LTASLL  382 (552)
Q Consensus       324 ~~~~~~~~---~~g~i~~L~~ll~~-~~~-------------~v~~~a~~aL~~l~~~~~~---~~~~~i~~~-~~~~~l  382 (552)
                      .+.. .+-   ..|++++|+++|.. +..             .-+.+|+.||.|++...++   +.+..++++ ++++.|
T Consensus       533 np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L  611 (778)
T 3opb_A          533 NPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTI  611 (778)
T ss_dssp             CHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHH
T ss_pred             CHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHH
Confidence            3321 111   13899999999983 211             2377999999999986533   457888884 999999


Q ss_pred             HhhhcCCChhHHHHHHHHHHHhhcCCcchH-HHHHhhcCc----hHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhH
Q 008827          383 ASLICDPEPSVQEQALALVRNLVDGRINSV-EYIFAEDGI----ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHK  457 (552)
Q Consensus       383 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~~~~----~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~  457 (552)
                      ..++.+++..+|..|++++.|++.+ ++.+ +.++..++.    -++.|+.++.+ .+.+++..|+|+|+|++++++...
T Consensus       612 ~~LL~s~n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts~~~~ia  689 (778)
T 3opb_A          612 ENLMLDENVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIATTIPLIA  689 (778)
T ss_dssp             HHGGGCSSHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCChHHH
Confidence            9999999999999999999999974 3332 233322211    27789898877 899999999999999987777667


Q ss_pred             HHHHHHhhHhhhhhhHHHHHHhhcC--CChhHHHHHHHHHHhhcC-CCCCCCHHHHHHHH-HCCcHHHHHhhhcCC
Q 008827          458 EAVMDQLLLRAENKAQSCIIKFLQS--NDSRLRTAAVWAVLNLTC-SSSPGSSGRLVKLH-DAGIVSHVKNMVNDP  529 (552)
Q Consensus       458 ~~i~~~~~~~~~~~~v~~Lv~lL~~--~~~~~~~~a~~~l~~l~~-~~~~~~~~~~~~l~-~~g~~~~L~~ll~~~  529 (552)
                      +.+++      ..++++.++.++++  ++.+++..++.++.|++. ..+++..+....+. ....+..|.++++++
T Consensus       690 ~~ll~------~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~  759 (778)
T 3opb_A          690 KELLT------KKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG  759 (778)
T ss_dssp             HHHTT------CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred             HHHHH------ccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence            77776      25788999999999  899999999999999994 21223222333444 334556777777644

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=7e-26  Score=214.31  Aligned_cols=243  Identities=24%  Similarity=0.335  Sum_probs=223.8

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHH
Q 008827          292 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE  371 (552)
Q Consensus       292 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~  371 (552)
                      |.+|.|+++|++++++++..|+++|.+++...+..+..+.+.|+++.|+++++++++.++..++++|.+++.. +++.+.
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHH
Confidence            5789999999999999999999999999988877888999999999999999999999999999999999873 467899


Q ss_pred             HHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcC
Q 008827          372 EIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT  451 (552)
Q Consensus       372 ~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~  451 (552)
                      .+.+.++++.+++++.++++.++..++++|++++...++....+++.+  .++.+.++|.+ +++.++..++++|+|++.
T Consensus        81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~  157 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG--GVEVLVKLLTS-TDSEVQKEAARALANIAS  157 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHHTTC-SCHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC--CHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999988777777888877  79999999988 889999999999999999


Q ss_pred             CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCc
Q 008827          452 GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCL  531 (552)
Q Consensus       452 ~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~  531 (552)
                      +++..++.+++       .|+++.|+.+++++++.++..|+++|.+++.    +..+..+.+.+.|+++.|.++++++++
T Consensus       158 ~~~~~~~~~~~-------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~----~~~~~~~~l~~~~~i~~L~~ll~~~~~  226 (252)
T 4hxt_A          158 GPDEAIKAIVD-------AGGVEVLVKLLTSTDSEVQKEAARALANIAS----GPTSAIKAIVDAGGVEVLQKLLTSTDS  226 (252)
T ss_dssp             SCHHHHHHHHH-------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT----SBHHHHHHHHHTTHHHHHHHGGGCSCH
T ss_pred             CCHHHHHHHHH-------CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc----CCHHHHHHHHHCCCHHHHHHHHCCCcH
Confidence            88776677775       8999999999999999999999999999995    577888999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhhcC
Q 008827          532 DVKLRVKTALEQFNSFDD  549 (552)
Q Consensus       532 ~v~~~a~~al~~~~~~~~  549 (552)
                      ++++.|.++|.++.....
T Consensus       227 ~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          227 EVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             HHHHHHHHHHHHHHHTCB
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            999999999999987653

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=5.5e-26  Score=215.03  Aligned_cols=241  Identities=24%  Similarity=0.314  Sum_probs=220.9

Q ss_pred             ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 008827          249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS  328 (552)
Q Consensus       249 ~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~  328 (552)
                      |.+|.++++|++++++++..|+++|.+++...+..+.. +.+.|+++.|+++|++++++++..|+++|++++.+.+..+.
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKA-IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH-HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            57899999999999999999999999998875545555 78899999999999999999999999999999988788888


Q ss_pred             HHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC
Q 008827          329 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  408 (552)
Q Consensus       329 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  408 (552)
                      .+.+.|+++.++.+++++++.++..++++|.+++. .+++.+..+.+.++++.+++++.++++.++..++++|+|++.+.
T Consensus        81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999986 34678889999999999999999999999999999999999987


Q ss_pred             cchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHH
Q 008827          409 INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLR  488 (552)
Q Consensus       409 ~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~  488 (552)
                      ++....+.+.+  +++.+.++|.+ +++.++..++++|++++.+++..++.+.+       .|+++.|+++++++++.++
T Consensus       160 ~~~~~~~~~~~--~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-------~~~i~~L~~ll~~~~~~v~  229 (252)
T 4hxt_A          160 DEAIKAIVDAG--GVEVLVKLLTS-TDSEVQKEAARALANIASGPTSAIKAIVD-------AGGVEVLQKLLTSTDSEVQ  229 (252)
T ss_dssp             HHHHHHHHHTT--HHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSBHHHHHHHHH-------TTHHHHHHHGGGCSCHHHH
T ss_pred             HHHHHHHHHCc--CHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHH-------CCCHHHHHHHHCCCcHHHH
Confidence            77777788777  89999999997 88999999999999999987777777775       8999999999999999999


Q ss_pred             HHHHHHHHhhcCC
Q 008827          489 TAAVWAVLNLTCS  501 (552)
Q Consensus       489 ~~a~~~l~~l~~~  501 (552)
                      ..|+++|.|++..
T Consensus       230 ~~a~~~L~~l~~~  242 (252)
T 4hxt_A          230 KEAQRALENIKSG  242 (252)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999999963

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=1.5e-25  Score=212.15  Aligned_cols=242  Identities=21%  Similarity=0.328  Sum_probs=218.4

Q ss_pred             ccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHh
Q 008827          290 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC  369 (552)
Q Consensus       290 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~  369 (552)
                      .....+.++..|++++++++..|+++|.++.......+..+.+.|+++.|+++++++++.++..++++|.+++.+ +++.
T Consensus        10 ~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~   88 (252)
T 4db8_A           10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQ   88 (252)
T ss_dssp             TTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHH
T ss_pred             ccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHH
Confidence            345689999999999999999999999887765666777899999999999999999999999999999999874 4678


Q ss_pred             HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhh
Q 008827          370 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNV  449 (552)
Q Consensus       370 ~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~l  449 (552)
                      +..+.+.|+++.++++++++++.++..++++|+|++.+.+.....+.+.+  +++.++++|.+ +++.++..++++|+|+
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~lL~~-~~~~v~~~a~~~L~~l  165 (252)
T 4db8_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG--ALPALVQLLSS-PNEQILQEALWALSNI  165 (252)
T ss_dssp             HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCC--CHHHHHHHHhC-CCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988765557777777  79999999988 8899999999999999


Q ss_pred             cCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC
Q 008827          450 ATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP  529 (552)
Q Consensus       450 a~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~  529 (552)
                      +.+++.....+++       .|+++.|+.+|+++++.++..|+++|.+++.    +..+....+.+.|+++.|.++++++
T Consensus       166 ~~~~~~~~~~~~~-------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~g~i~~L~~ll~~~  234 (252)
T 4db8_A          166 ASGGNEQIQAVID-------AGALPALVQLLSSPNEQILQEALWALSNIAS----GGNEQKQAVKEAGALEKLEQLQSHE  234 (252)
T ss_dssp             TTSCHHHHHHHHH-------TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT----SCHHHHHHHHHTTHHHHHHTTTTCS
T ss_pred             HcCChHHHHHHHH-------CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc----CCHHHHHHHHHCCcHHHHHHHhCCC
Confidence            9988777777765       7999999999999999999999999999995    5677888999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhh
Q 008827          530 CLDVKLRVKTALEQFNS  546 (552)
Q Consensus       530 ~~~v~~~a~~al~~~~~  546 (552)
                      ++++++.|.++|.++..
T Consensus       235 ~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          235 NEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             SSHHHHTHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999998864

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=1.4e-25  Score=212.44  Aligned_cols=239  Identities=21%  Similarity=0.250  Sum_probs=214.5

Q ss_pred             ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 008827          249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS  328 (552)
Q Consensus       249 ~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~  328 (552)
                      ..++.+...|++++++++..|+++|+++.......+.. +.+.|++|.|+++|++++++++..|+++|++++.+.+..+.
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~-~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQA-VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHH-HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHH-HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            36899999999999999999999997764433344444 78899999999999999999999999999999988888888


Q ss_pred             HHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhH-HHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827          329 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCK-EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  407 (552)
Q Consensus       329 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  407 (552)
                      .+.+.|+++.|++++.++++.++..++++|+|++...  ..+ ..+.+.++++.|++++.++++.++..++++|++++.+
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC--chHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999998743  345 7888999999999999999999999999999999998


Q ss_pred             CcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhH
Q 008827          408 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL  487 (552)
Q Consensus       408 ~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~  487 (552)
                      .++....+++.+  +++.|.++|.+ +++.++..++++|+|++.+++..+..+++       .|+++.|+.+++++++.+
T Consensus       169 ~~~~~~~~~~~~--~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-------~g~i~~L~~ll~~~~~~v  238 (252)
T 4db8_A          169 GNEQIQAVIDAG--ALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKE-------AGALEKLEQLQSHENEKI  238 (252)
T ss_dssp             CHHHHHHHHHTT--CHHHHHHGGGC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHH-------TTHHHHHHTTTTCSSSHH
T ss_pred             ChHHHHHHHHCC--CHHHHHHHHCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHH-------CCcHHHHHHHhCCCCHHH
Confidence            877777777777  79999999988 79999999999999999888877777776       799999999999999999


Q ss_pred             HHHHHHHHHhhcC
Q 008827          488 RTAAVWAVLNLTC  500 (552)
Q Consensus       488 ~~~a~~~l~~l~~  500 (552)
                      +..|+++|.|++.
T Consensus       239 ~~~A~~~L~~l~~  251 (252)
T 4db8_A          239 QKEAQEALEKLQS  251 (252)
T ss_dssp             HHTHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999983

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.8e-23  Score=218.59  Aligned_cols=430  Identities=11%  Similarity=0.071  Sum_probs=313.8

Q ss_pred             HHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhc-CChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHh
Q 008827           94 DASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLEL  172 (552)
Q Consensus        94 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~l  172 (552)
                      ..++.++..+----++.+..+.-  ..+..+.+.+.+++ .+..+....+.+|...+....   ....+..++++.|.++
T Consensus       230 ~~~~~~l~~lfPi~p~~~s~lfl--~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~---cR~~I~~~~~~~L~~~  304 (778)
T 3opb_A          230 SIIVKTLSELYPSLTTLCSEIFL--TKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDET---MRTYITENYLQLLERS  304 (778)
T ss_dssp             HHHHHHHHHHTTTTHHHHHHHHS--TTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHc--cccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcH---HHHHHHHhHHHHHHHH
Confidence            34555555543333444444432  35566767777754 444555555555555444322   2345577889999999


Q ss_pred             cCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhc-ccH
Q 008827          173 LDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL-QVL  251 (552)
Q Consensus       173 l~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~-~~l  251 (552)
                      ++. ..++..|+-+|.++..........+  ....+.+.++|.++.  .+-++.|+..|++++. +++.|..+.+. |.+
T Consensus       305 l~~-~~ir~lAavvL~KL~~~~~~~~~si--~~La~~~~~~L~~~~--~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L  378 (778)
T 3opb_A          305 LNV-EDVQIYSALVLVKTWSFTKLTCINL--KQLSEIFINAISRRI--VPKVEMSVEALAYLSL-KASVKIMIRSNESFT  378 (778)
T ss_dssp             TTS-GGGHHHHHHHHHHHTGGGTCTTCCH--HHHHHHHHHHTTTCC--HHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHH
T ss_pred             hcc-HHHHHHHHHHHHHHhcCCCCCcCcH--HHHHHHHHHHHhcCC--ccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHH
Confidence            975 5788899999999876432210001  123456667776653  4458999999999986 56778777754 669


Q ss_pred             HHHHHhcCC-CCHHHHHHHHHHHHHhhcccccc-------------------------------------cchhhhccCc
Q 008827          252 KLVVDALAH-DSSDVRSAACMCLRSVSRSIKNL-------------------------------------SAGSFMNETI  293 (552)
Q Consensus       252 ~~lv~~L~~-~~~~v~~~a~~~L~~ls~~~~~~-------------------------------------~~~~~~~~~~  293 (552)
                      +.|+++++. ++..+.+.++.+|.|++...+..                                     +...+.+.|+
T Consensus       379 ~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGv  458 (778)
T 3opb_A          379 EILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTEL  458 (778)
T ss_dssp             HHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcC
Confidence            999999995 78889999999999998754321                                     1122578999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHH---HHHHHHHHHHHhcccCChHhH
Q 008827          294 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST---IRLNALRALRNLIFLAEDKCK  370 (552)
Q Consensus       294 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~---v~~~a~~aL~~l~~~~~~~~~  370 (552)
                      +|.|+.++.++++.+++.|+++|.|++.+ ..+|..+++.|+++.|+.++.+....   .|.+|+.+|.+++...+|.. 
T Consensus       459 Ip~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~-  536 (778)
T 3opb_A          459 ISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL-  536 (778)
T ss_dssp             HHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH-
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH-
Confidence            99999999999999999999999999965 77898999999999999999987554   89999999999987666543 


Q ss_pred             HHHHH----hhcHHHHHhhhcC-CCh-------------hHHHHHHHHHHHhhcCCc----chHHHHHhh-cCchHHHHH
Q 008827          371 EEIFM----ELTASLLASLICD-PEP-------------SVQEQALALVRNLVDGRI----NSVEYIFAE-DGIILDAVG  427 (552)
Q Consensus       371 ~~i~~----~~~~~~l~~ll~~-~~~-------------~v~~~a~~~L~~l~~~~~----~~~~~i~~~-~~~~~~~l~  427 (552)
                        ++.    .++++.|+++|.. ++.             -.+..|+.+|.|++....    +....++++ +  +++.+.
T Consensus       537 --~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g--a~~~L~  612 (778)
T 3opb_A          537 --IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV--YWSTIE  612 (778)
T ss_dssp             --HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH--HHHHHH
T ss_pred             --HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC--HHHHHH
Confidence              121    3789999999983 221             126789999999998752    234667875 6  799999


Q ss_pred             HHhcccCchhHHHHHHHHHHhhcCCChhhH-HHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCC
Q 008827          428 RQLRIASKAEIEIQGMYVLGNVATGKESHK-EAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGS  506 (552)
Q Consensus       428 ~~L~~~~~~~v~~~a~~~L~~la~~~~~~~-~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~  506 (552)
                      .+|.+ .+..++..|+++++|++...+ .+ +.++..--+ ...+-++.|+.++.++|..+|.+|+|+|.|++.    +.
T Consensus       613 ~LL~s-~n~~VrrAA~elI~NL~~~~e-~i~~k~~~~~~~-~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts----~~  685 (778)
T 3opb_A          613 NLMLD-ENVPLQRSTLELISNMMSHPL-TIAAKFFNLENP-QSLRNFNILVKLLQLSDVESQRAVAAIFANIAT----TI  685 (778)
T ss_dssp             HGGGC-SSHHHHHHHHHHHHHHHTSGG-GTGGGTSCCSSH-HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH----HC
T ss_pred             HHHhC-CCHHHHHHHHHHHHHHhCCcH-HHHHHHHhhcCc-hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC----CC
Confidence            99988 788999999999999997443 32 223210000 012236899999999999999999999999974    34


Q ss_pred             HHHHHHHHHC-CcHHHHHhhhcC--CCccHHHHHHHHHHHHhhh
Q 008827          507 SGRLVKLHDA-GIVSHVKNMVND--PCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       507 ~~~~~~l~~~-g~~~~L~~ll~~--~~~~v~~~a~~al~~~~~~  547 (552)
                      ....+.+.+. ++++.++.++++  ++++++.++..++.++.++
T Consensus       686 ~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~  729 (778)
T 3opb_A          686 PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV  729 (778)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence            5566777777 799999999987  7899999999999999974

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.92  E-value=9.2e-23  Score=217.52  Aligned_cols=456  Identities=14%  Similarity=0.146  Sum_probs=320.6

Q ss_pred             hHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 008827           38 MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVG  116 (552)
Q Consensus        38 i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~  116 (552)
                      ++.+..+..+++..++..++.++..++..-...   .....++.+..++++ ++.+|..++.+|+.++...+..  ..  
T Consensus       128 ~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~--  200 (588)
T 1b3u_A          128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NV--  200 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HH--
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hH--
Confidence            344444444444444444444444443221110   112345666666665 6789999999999987653221  11  


Q ss_pred             ccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcCC-
Q 008827          117 PDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEK-  194 (552)
Q Consensus       117 ~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~-  194 (552)
                        ....++.+..+++++++.+|..|+.+|..++...+.    ......++|.+.++++++ ..+|..++.+|..++... 
T Consensus       201 --~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~  274 (588)
T 1b3u_A          201 --KSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG  274 (588)
T ss_dssp             --HHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC
T ss_pred             --HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC
Confidence              134667788888999999999999999998875432    233456788888888754 568999999998887521 


Q ss_pred             HHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCCh-hHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHH
Q 008827          195 EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE-CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCL  273 (552)
Q Consensus       195 ~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L  273 (552)
                      ++    .+....++.+++++.++  ++.+|..++.+|+.++..-. ..+....-..++|.+..+++++++.+|..++++|
T Consensus       275 ~~----~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l  348 (588)
T 1b3u_A          275 PE----ITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVI  348 (588)
T ss_dssp             HH----HHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTG
T ss_pred             cc----cchhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            11    12345678888888765  48899999999999886422 2121122346789999999999999999999999


Q ss_pred             HHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHH
Q 008827          274 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN  353 (552)
Q Consensus       274 ~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~  353 (552)
                      ..++...+.   . .....++|.+..+++++++++|..++.++..+....+..   ......+|.+..++.+++..+|..
T Consensus       349 ~~l~~~~~~---~-~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~  421 (588)
T 1b3u_A          349 MGLSPILGK---D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLA  421 (588)
T ss_dssp             GGGHHHHCH---H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred             HHHHHHhhH---h-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHH
Confidence            998764321   1 223457888999999999999999999999887643321   123467888999999999999999


Q ss_pred             HHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccc
Q 008827          354 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA  433 (552)
Q Consensus       354 a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~  433 (552)
                      ++.++..++...+++    ......++.+..++.++++.+++.++.+++.++.....  ...+. .  +++.+..++.+ 
T Consensus       422 ~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~-~--llp~l~~~~~~-  491 (588)
T 1b3u_A          422 IIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK--EWAHA-T--IIPKVLAMSGD-  491 (588)
T ss_dssp             HHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--HHHHH-H--THHHHHHTTTC-
T ss_pred             HHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHH-H--HHHHHHHHhhC-
Confidence            999999987532221    11234578888999999999999999999999754221  11222 1  67777776665 


Q ss_pred             CchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 008827          434 SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKL  513 (552)
Q Consensus       434 ~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l  513 (552)
                      +++.++..++++++.++....  ...+.        ..+++.|..+++++++.+|..++++++.+...  -|.     .+
T Consensus       492 ~~~~~R~~a~~~l~~l~~~~~--~~~~~--------~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~--~~~-----~~  554 (588)
T 1b3u_A          492 PNYLHRMTTLFCINVLSEVCG--QDITT--------KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI--LDN-----ST  554 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHH--HHHHH--------HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG--SCH-----HH
T ss_pred             CCHHHHHHHHHHHHHHHHhcC--HHHHH--------HHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH--hch-----hh
Confidence            888999999999999875221  11122        46778999999999999999999999999852  121     12


Q ss_pred             HHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhh
Q 008827          514 HDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  546 (552)
Q Consensus       514 ~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~  546 (552)
                      ....+++.|.++++|++++||+.|..|+..+.+
T Consensus       555 ~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~  587 (588)
T 1b3u_A          555 LQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL  587 (588)
T ss_dssp             HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence            223457788888899999999999999988754

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.92  E-value=1.7e-22  Score=215.54  Aligned_cols=460  Identities=13%  Similarity=0.075  Sum_probs=316.0

Q ss_pred             chHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhc
Q 008827           37 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV  115 (552)
Q Consensus        37 ~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~  115 (552)
                      .++.+..++.++++.++..++..|.+++......  ......++.+..+..+ ++.+|..+..+++.++..-+...    
T Consensus        88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~----  161 (588)
T 1b3u_A           88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPS--DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV----  161 (588)
T ss_dssp             GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH----
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH----
Confidence            3444444444455555555555555554332211  0112233444444443 34555555555555543321110    


Q ss_pred             cccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCC
Q 008827          116 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEK  194 (552)
Q Consensus       116 ~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~  194 (552)
                         ....++.+..+++|+++.||..|+.+|..++...+.    .......+|.+..++++ ++.+|..|+.+|..++...
T Consensus       162 ---~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~  234 (588)
T 1b3u_A          162 ---KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL  234 (588)
T ss_dssp             ---HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS
T ss_pred             ---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC
Confidence               023456666788999999999999999999875432    23346789999999984 4678999999999887543


Q ss_pred             HHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHH
Q 008827          195 EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLR  274 (552)
Q Consensus       195 ~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~  274 (552)
                      +..   ......+|.+.+++.+.  ++.+|..++.+|+.++..-.   .......++|.+..+++++++.+|..++.++.
T Consensus       235 ~~~---~~~~~~~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  306 (588)
T 1b3u_A          235 PQE---DLEALVMPTLRQAAEDK--SWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHKVK  306 (588)
T ss_dssp             CHH---HHHHHTHHHHHHHHTCS--SHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             CHH---HHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHhC---cccchhHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            221   12234567777776654  48899999999999875211   11233467999999999999999999999999


Q ss_pred             HhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHH
Q 008827          275 SVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNA  354 (552)
Q Consensus       275 ~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a  354 (552)
                      .++...+...........++|.+..+++++++.+|..++++|+.++...+.   .......++.+..+++++++.+|..+
T Consensus       307 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a  383 (588)
T 1b3u_A          307 EFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNI  383 (588)
T ss_dssp             HHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHH
T ss_pred             HHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            998753321100012356788899999999999999999999998753322   12234578899999999999999999


Q ss_pred             HHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccC
Q 008827          355 LRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS  434 (552)
Q Consensus       355 ~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~  434 (552)
                      +.++..+....+++    ......++.+.+++.++++.++..++.++..++..-...   .+...  +++.+.+.|.+ +
T Consensus       384 ~~~l~~l~~~~~~~----~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~--l~~~l~~~l~d-~  453 (588)
T 1b3u_A          384 ISNLDCVNEVIGIR----QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEK--LNSLCMAWLVD-H  453 (588)
T ss_dssp             HTTCHHHHHHSCHH----HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHH--HHHHHHHGGGC-S
T ss_pred             HHHHHHHHHhcCHH----HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHH--HHHHHHHHhcC-C
Confidence            99999887644332    123456788888999999999999999999887431110   01111  67888888877 7


Q ss_pred             chhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 008827          435 KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLH  514 (552)
Q Consensus       435 ~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~  514 (552)
                      ++.|+..++.+++.++.....  ....        ..++|.|..++++++..+|..++++++.++.     .-  .....
T Consensus       454 ~~~Vr~~a~~~l~~l~~~~~~--~~~~--------~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~-----~~--~~~~~  516 (588)
T 1b3u_A          454 VYAIREAATSNLKKLVEKFGK--EWAH--------ATIIPKVLAMSGDPNYLHRMTTLFCINVLSE-----VC--GQDIT  516 (588)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCH--HHHH--------HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH-----HH--HHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhCc--hhHH--------HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-----hc--CHHHH
Confidence            889999999999998863221  1122        4667888899999999999999999999984     11  11122


Q ss_pred             HCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          515 DAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       515 ~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      ...+++.|.++++|++++||..+.++|..+...
T Consensus       517 ~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~  549 (588)
T 1b3u_A          517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             HHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence            345788999999999999999999999988753

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=1.6e-22  Score=185.67  Aligned_cols=202  Identities=20%  Similarity=0.256  Sum_probs=182.9

Q ss_pred             hhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCCh
Q 008827          288 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED  367 (552)
Q Consensus       288 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  367 (552)
                      ....++.+.|+.+|++++++++..|+++|.+++.+.+..+..+.+.|+++.|+++++++++.++..|+++|+|++.+ ++
T Consensus         8 ~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~   86 (210)
T 4db6_A            8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GN   86 (210)
T ss_dssp             -----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CH
T ss_pred             ccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-Cc
Confidence            34578899999999999999999999999999988888888999999999999999999999999999999999863 46


Q ss_pred             HhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHH
Q 008827          368 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLG  447 (552)
Q Consensus       368 ~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~  447 (552)
                      +.+..+.+.++++.+++++.++++.++..++++|+|++.++++....+++.+  .++.|+++|.+ ++++++..++++|.
T Consensus        87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~ll~~-~~~~v~~~a~~aL~  163 (210)
T 4db6_A           87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG--ALPALVQLLSS-PNEQILQEALWALS  163 (210)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHHTTC-SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcC--cHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence            7888999999999999999999999999999999999998887778888777  89999999998 78999999999999


Q ss_pred             hhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          448 NVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       448 ~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      |++.+++..+..+.+       .|+++.|+.+++++++.++..|+++|.+++.
T Consensus       164 ~l~~~~~~~~~~~~~-------~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          164 NIASGGNEQKQAVKE-------AGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHTSCHHHHHHHHH-------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHcCCcHHHHHHHH-------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            999987777777765       7999999999999999999999999999983

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.91  E-value=1.7e-22  Score=224.72  Aligned_cols=514  Identities=13%  Similarity=0.124  Sum_probs=335.0

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCCCCCC-cccc---cccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCch
Q 008827            4 LKSYMEVVDAGARSLKMIYQSKMAPK-YDFL---QEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVL   79 (552)
Q Consensus         4 ~~~~~~~~~~~l~~l~~l~~~~~~~~-~~~~---~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i   79 (552)
                      .+++....+.++.+|..++....... .+.+   -...++.++.+++++++.+|..|+.++..+.........-.-.+.+
T Consensus       138 ~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l  217 (852)
T 4fdd_A          138 DSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFI  217 (852)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            34567788889999988865421110 0010   1346788888888888999999999999876543221110112467


Q ss_pred             HHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchh
Q 008827           80 KRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQD  158 (552)
Q Consensus        80 ~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~  158 (552)
                      +.+..++.+ ++.+|..++.+|..++...+.......    .+.++.++..+++.++.+|..|..++..++........-
T Consensus       218 ~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l----~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~  293 (852)
T 4fdd_A          218 ENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM----HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVL  293 (852)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH----HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHH
Confidence            778887776 679999999999999987655432221    345667778889999999999999999987643211100


Q ss_pred             hhhHHhHHHHHHHhc-----------CC------------CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhh
Q 008827          159 VGIKTKLINNLLELL-----------DD------------PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQ  215 (552)
Q Consensus       159 ~~~~~g~i~~Lv~ll-----------~~------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~  215 (552)
                      .-.....+|.+++.+           .+            ...++..|+.+|..++...+.   .+. ...++.+.+.+.
T Consensus       294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-~~l~~~l~~~l~  369 (852)
T 4fdd_A          294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-PHILPLLKELLF  369 (852)
T ss_dssp             TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhc
Confidence            112346788888887           22            113577788888888743221   011 123566666666


Q ss_pred             cCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHH
Q 008827          216 KGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVI  295 (552)
Q Consensus       216 ~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~  295 (552)
                      ++  ++.+|+.+++++++++....+.-. -.-.+++|.++..++++++.||..+++++++++......... -...++++
T Consensus       370 ~~--~~~~R~aa~~alg~i~~~~~~~~~-~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-~~~~~ll~  445 (852)
T 4fdd_A          370 HH--EWVVKESGILVLGAIAEGCMQGMI-PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD-TYLKPLMT  445 (852)
T ss_dssp             CS--SHHHHHHHHHHHHHTTTTTHHHHG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTT-TTHHHHHH
T ss_pred             CC--CHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHH-HHHHHHHH
Confidence            54  589999999999999875433111 122468999999999999999999999999998753221111 23457889


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccc-----------
Q 008827          296 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL-----------  364 (552)
Q Consensus       296 ~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-----------  364 (552)
                      .|+..+.++++.++..|+++|.+++...+....... .+.++.|+..++..+......++.+++.++..           
T Consensus       446 ~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~  524 (852)
T 4fdd_A          446 ELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI  524 (852)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHH
Confidence            999999999999999999999999864332111111 34555666666554444433333444433210           


Q ss_pred             ----------------CChHhHHHHHH----------h-------hcHHHHHhhhc-----------------CCChhHH
Q 008827          365 ----------------AEDKCKEEIFM----------E-------LTASLLASLIC-----------------DPEPSVQ  394 (552)
Q Consensus       365 ----------------~~~~~~~~i~~----------~-------~~~~~l~~ll~-----------------~~~~~v~  394 (552)
                                      .+++.+ .+++          .       ..++.++.++.                 .++.+++
T Consensus       525 ~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~  603 (852)
T 4fdd_A          525 QMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFM  603 (852)
T ss_dssp             HHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHH
T ss_pred             HHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHH
Confidence                            011110 0000          0       01222222221                 2356788


Q ss_pred             HHHHHHHHHhhcCCcchHHHHH-hhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhH
Q 008827          395 EQALALVRNLVDGRINSVEYIF-AEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ  473 (552)
Q Consensus       395 ~~a~~~L~~l~~~~~~~~~~i~-~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v  473 (552)
                      ..++++++.++..-.......+ ...  +++.+...+++ +++.++..+.++++.++..........+        ..++
T Consensus       604 ~~~l~~l~~l~~~l~~~~~~~~~~~~--~~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~l--------~~~l  672 (852)
T 4fdd_A          604 IVALDLLSGLAEGLGGNIEQLVARSN--ILTLMYQCMQD-KMPEVRQSSFALLGDLTKACFQHVKPCI--------ADFM  672 (852)
T ss_dssp             HHHHHHHHHHHHHHGGGGHHHHHTCC--HHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCGGGTGGGH--------HHHH
T ss_pred             HHHHHHHHHHHHHHhHhHHHHhcCCc--HHHHHHHHhCC-CChhHHHHHHHHHHHHHHHhhHHHHHHH--------HHHH
Confidence            8888888888765434444444 333  78888888877 7899999999999999875544444444        3577


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCC--ccHHHHHHHHHHHHhhh
Q 008827          474 SCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPC--LDVKLRVKTALEQFNSF  547 (552)
Q Consensus       474 ~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~--~~v~~~a~~al~~~~~~  547 (552)
                      |.+.+.|..+++.+|..|+|+++.++...  +  +...... ..+++.|.+++++++  ..+++.+..+++++...
T Consensus       673 p~l~~~l~~~~~~v~~~a~~alg~i~~~~--~--~~~~p~~-~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~  743 (852)
T 4fdd_A          673 PILGTNLNPEFISVCNNATWAIGEISIQM--G--IEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV  743 (852)
T ss_dssp             HHHHHTCCTTSHHHHHHHHHHHHHHHHHH--G--GGGGGGT-HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCccchHHHHHHHHHHHHHHHHh--h--HhHHHHH-HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHh
Confidence            88999998888999999999999997411  1  1111221 356889999887653  36899999999998764

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=2e-22  Score=184.96  Aligned_cols=200  Identities=19%  Similarity=0.195  Sum_probs=181.4

Q ss_pred             HhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccccc
Q 008827          203 EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN  282 (552)
Q Consensus       203 ~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~  282 (552)
                      ..+..+.|..+|.++  ++.++..|+++|++++..+++.+..+.+.|++|.++++|+++++.++..|+++|++++...+.
T Consensus        10 ~~~~~~~l~~LL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A           10 HGSELPQMVQQLNSP--DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ---CHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             ccchhHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence            356788999988876  488999999999999988888999999999999999999999999999999999999976555


Q ss_pred             ccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008827          283 LSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI  362 (552)
Q Consensus       283 ~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  362 (552)
                      .+.. +.+.|++|.|+.+|+++++.++..|+++|+|++.+.+..++.+.+.|+++.|++++.++++.++..++++|.|++
T Consensus        88 ~~~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  166 (210)
T 4db6_A           88 QIQA-VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA  166 (210)
T ss_dssp             HHHH-HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            5555 788999999999999999999999999999999888888888899999999999999999999999999999998


Q ss_pred             ccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhc
Q 008827          363 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD  406 (552)
Q Consensus       363 ~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  406 (552)
                      .. +++.+..+.+.|+++.|++++.++++++++.|+++|++++.
T Consensus       167 ~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          167 SG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             TS-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             cC-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            74 46788889999999999999999999999999999999874

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.89  E-value=1.1e-21  Score=218.31  Aligned_cols=513  Identities=12%  Similarity=0.063  Sum_probs=332.8

Q ss_pred             CCCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHh-------
Q 008827            3 LLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFD-------   75 (552)
Q Consensus         3 ~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~-------   75 (552)
                      |..++..+...+..++..+.... .+ ..+  ++.++.++..++++++.+++.+..+|..+|+.....  +..       
T Consensus        99 l~~~~~~vr~~~a~~i~~ia~~~-~~-~~w--p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~--~~~~~~~~~~  172 (852)
T 4fdd_A           99 IGDSSPLIRATVGILITTIASKG-EL-QNW--PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI--LDSDVLDRPL  172 (852)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHHT-TT-TTC--TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH--HHHCSSSSCH
T ss_pred             HcCCCHHHHHHHHHHHHHHHHhc-Cc-ccc--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH--hchhhhcchH
Confidence            34566777888888888887653 22 233  578899999999988899999999999988543321  111       


Q ss_pred             cCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCC
Q 008827           76 AGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC  154 (552)
Q Consensus        76 ~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~  154 (552)
                      .+.++.++.++++ +..+|..|+.+|..+....+......    -...++.++.++.++++.+|..|+.+|..++...+.
T Consensus       173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~----~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~  248 (852)
T 4fdd_A          173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH----IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD  248 (852)
T ss_dssp             HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS----HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH
Confidence            2356777777776 67999999999998775543221111    135677888889999999999999999999986543


Q ss_pred             cchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHH--HHhCcHHHHHHhhh----------cC---C
Q 008827          155 YLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLA--FEVNGVDKLYNHLQ----------KG---S  218 (552)
Q Consensus       155 ~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~i~~L~~~L~----------~~---~  218 (552)
                      .... . -.++++.+++++++ ++.++..|+..+..++.... .++.+  +-...+|.+++.+.          ..   +
T Consensus       249 ~~~~-~-l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed  325 (852)
T 4fdd_A          249 RLLP-H-MHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGG  325 (852)
T ss_dssp             HHGG-G-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----
T ss_pred             HHHH-H-HHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccc
Confidence            2221 1 24688888888884 45789999999998876432 11211  01133566666552          11   0


Q ss_pred             -------CChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhcc
Q 008827          219 -------LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNE  291 (552)
Q Consensus       219 -------~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~  291 (552)
                             ....+|..+..+|..++...++   .+ -..++|.+.+.++++++.+|.+|+.+++.++......-..  .-.
T Consensus       326 ~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~-~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~--~l~  399 (852)
T 4fdd_A          326 SGGDDTISDWNLRKCSAAALDVLANVYRD---EL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP--YLP  399 (852)
T ss_dssp             -------CCCCHHHHHHHHHHHHHHHHGG---GG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG--GHH
T ss_pred             cccccccccchHHHHHHHHHHHHHHhccH---HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH--HHH
Confidence                   1235688899999988753221   11 1247888888999999999999999999998764431111  335


Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHH
Q 008827          292 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE  371 (552)
Q Consensus       292 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~  371 (552)
                      +++|.++..++++++.+|..|++++++++...........-.+.++.+++.+.++++.+|.+|++++.+++...++....
T Consensus       400 ~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~  479 (852)
T 4fdd_A          400 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP  479 (852)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHh
Confidence            78899999999999999999999999988532211001112367888999999999999999999999998643322111


Q ss_pred             HHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhc----------------------------CCcch------HHHHHh
Q 008827          372 EIFMELTASLLASLICDPEPSVQEQALALVRNLVD----------------------------GRINS------VEYIFA  417 (552)
Q Consensus       372 ~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~----------------------------~~~~~------~~~i~~  417 (552)
                      . + ...++.+..+++..+......+..+++.++.                            .+++.      ...+..
T Consensus       480 ~-l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~  557 (852)
T 4fdd_A          480 Y-L-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVAT  557 (852)
T ss_dssp             G-H-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHH
T ss_pred             H-H-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            1 1 2234444444444333333333333333321                            01100      000000


Q ss_pred             hcC--------chHHHHHHHhcc----------------cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhH
Q 008827          418 EDG--------IILDAVGRQLRI----------------ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ  473 (552)
Q Consensus       418 ~~~--------~~~~~l~~~L~~----------------~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v  473 (552)
                      ..|        .+++.+...+..                .++.+++..++.+++.++.+...+....+.      +.+++
T Consensus       558 ~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~------~~~~~  631 (852)
T 4fdd_A          558 ALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVA------RSNIL  631 (852)
T ss_dssp             HHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHH------TCCHH
T ss_pred             HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhc------CCcHH
Confidence            000        022322233221                124567788888888887643333444442      15778


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          474 SCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       474 ~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      +.+..++.++++.+|..+.++++.++..    ..+........ +++.+.+.+.++...++..|.|+++.+...
T Consensus       632 ~~l~~~l~~~~~~vr~~a~~~l~~l~~~----~~~~~~~~l~~-~lp~l~~~l~~~~~~v~~~a~~alg~i~~~  700 (852)
T 4fdd_A          632 TLMYQCMQDKMPEVRQSSFALLGDLTKA----CFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQ  700 (852)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHH----CGGGTGGGHHH-HHHHHHHTCCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHHH----hhHHHHHHHHH-HHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999841    11112222122 577888888777789999999999988654

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.88  E-value=5.3e-21  Score=182.81  Aligned_cols=186  Identities=23%  Similarity=0.286  Sum_probs=168.6

Q ss_pred             hhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHH-hcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHh
Q 008827          222 RRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD-ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL  300 (552)
Q Consensus       222 ~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~-~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l  300 (552)
                      +-+..|+..|.+++. +.++...+.+.|++|.++. +|+++++.+|..|+++|++++.+.+..++. +.+.|++|+|+.+
T Consensus        55 e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~-vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           55 QEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQ-VLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH-HHHCCCHHHHHHH
Confidence            467788999999986 4567778889999999999 999999999999999999999876655555 8889999999999


Q ss_pred             hc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcH
Q 008827          301 LD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA  379 (552)
Q Consensus       301 L~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~  379 (552)
                      |+ ++++.++..|+|+|+|++.++++..+.+.+.|+++.|+.++++++..++..|+|+|++++.+ +++.+..+.+.|++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence            98 46899999999999999998888888899999999999999999999999999999999886 56789999999999


Q ss_pred             HHHHhhhcCCChhHHHHHHHHHHHhhcCCcc
Q 008827          380 SLLASLICDPEPSVQEQALALVRNLVDGRIN  410 (552)
Q Consensus       380 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~  410 (552)
                      +.|+.+|.++++.+++.++++|+|++.+.+.
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~  242 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQ  242 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCChh
Confidence            9999999999999999999999999988543

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.87  E-value=5.4e-21  Score=174.68  Aligned_cols=196  Identities=15%  Similarity=0.137  Sum_probs=169.7

Q ss_pred             HHHHHHHhcC-CCC--chhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH
Q 008827          165 LINNLLELLD-DPG--RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC  241 (552)
Q Consensus       165 ~i~~Lv~ll~-~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~  241 (552)
                      .+|.|+++|. +++  .++..|++++.+++..++..+..+++.|+||.|+++|.++  ++.+++.|+++|.+++.+++++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~--~~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ--NEDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHH
Confidence            5899999998 444  6788999999999998888888999999999999999876  4889999999999999888899


Q ss_pred             HHHHHhcccHHHHHHhcC-CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc----------------CC
Q 008827          242 RSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD----------------DT  304 (552)
Q Consensus       242 ~~~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~----------------~~  304 (552)
                      +..+.+.|++|.|+++|+ .++.++++.++.+|++|+.. +..+.. +.+ +++|+|++++.                ..
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~-i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~  163 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNL-MIT-EALLTLTENIIIPFSGWPEGDYPKANGLL  163 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHH-HHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHH-HHh-ccHHHHHHHHhccccCCcccccccccccc
Confidence            999999999999999998 57999999999999999987 444555 555 56999998762                13


Q ss_pred             CHHHHHHHHHHHHHhhcCCchhHHHHHhh-CcHHHHHHhhcC------CCHHHHHHHHHHHHHhcccC
Q 008827          305 STAVQVAALGAISNIVVDFTTRRSTFIRL-GGVKLLVQLSKS------MDSTIRLNALRALRNLIFLA  365 (552)
Q Consensus       305 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~~-g~i~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~  365 (552)
                      +++++++|+++|.|++...++.|+.+.+. |+|+.|+.+++.      .+...+++++.+|.||++.-
T Consensus       164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~~  231 (233)
T 3tt9_A          164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQL  231 (233)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCCC
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhh
Confidence            77999999999999998777889889876 678999999875      25689999999999998753

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.86  E-value=8.4e-20  Score=174.47  Aligned_cols=225  Identities=14%  Similarity=0.178  Sum_probs=183.7

Q ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHH-hhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHh
Q 008827          306 TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQ-LSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS  384 (552)
Q Consensus       306 ~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~  384 (552)
                      .+-+..|+..|.+++.+ .++...+.+.|+++.|+. +|.++++.+|..|+|+|++++. .++.++..+++.|+++.|++
T Consensus        54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~-~n~~~~~~vv~~g~l~~Ll~  131 (296)
T 1xqr_A           54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQ-NVAAIQEQVLGLGALRKLLR  131 (296)
T ss_dssp             HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHCCCHHHHHH
Confidence            46788999999999964 456667889999999999 9999999999999999999987 45679999999999999999


Q ss_pred             hhcC-CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHH
Q 008827          385 LICD-PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQ  463 (552)
Q Consensus       385 ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~  463 (552)
                      +|++ +++.+++.|+|+|+|++.++++..+.+...+  .++.|+.+|.+ +++.++..++|+|++++.+++..++.+++ 
T Consensus       132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~g--gi~~L~~lL~~-~d~~v~~~A~~aLs~L~~~~~~~~~~vv~-  207 (296)
T 1xqr_A          132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLD--GFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCS-  207 (296)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT--HHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHH-
T ss_pred             HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCC--CHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCChHHHHHHHH-
Confidence            9985 5889999999999999999887777777776  68999999988 89999999999999999988888888886 


Q ss_pred             hhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHC--CcHHHH---Hhhhc-C-CCccHHHH
Q 008827          464 LLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDA--GIVSHV---KNMVN-D-PCLDVKLR  536 (552)
Q Consensus       464 ~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~--g~~~~L---~~ll~-~-~~~~v~~~  536 (552)
                            .|+++.|+.+|.+++..++..|+++|.+++.    +...........  .....|   .+-++ . .+.+..+.
T Consensus       208 ------~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~----~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~  277 (296)
T 1xqr_A          208 ------MGMVQQLVALVRTEHSPFHEHVLGALCSLVT----DFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEF  277 (296)
T ss_dssp             ------TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT----TCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             ------cCCHHHHHHHHcCCChhHHHHHHHHHHHHHh----CChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence                  8999999999999999999999999999995    223222222211  111222   11222 2 24566777


Q ss_pred             HHHHHHHHhh
Q 008827          537 VKTALEQFNS  546 (552)
Q Consensus       537 a~~al~~~~~  546 (552)
                      +...+.+++.
T Consensus       278 ~~~il~~~f~  287 (296)
T 1xqr_A          278 CEKLLQTCFS  287 (296)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHcC
Confidence            7777777763

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.85  E-value=2.8e-19  Score=189.82  Aligned_cols=357  Identities=15%  Similarity=0.124  Sum_probs=230.5

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHH
Q 008827            4 LKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLT   83 (552)
Q Consensus         4 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~   83 (552)
                      .+.+......+++-+..++....    +.  ..+.+.+++++.+++..++..+...+..+++......    .-++..+.
T Consensus        23 ~~~~~~~k~~~~~kli~~~~~G~----d~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~----~l~~n~l~   92 (591)
T 2vgl_B           23 NNEKKEKRKEAVKKVIAAMTVGK----DV--SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA----IMAVNSFV   92 (591)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHTTC----CC--GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH----HTTHHHHG
T ss_pred             cCCCHHHHHHHHHHHHHHHHCCC----Ch--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH----HHHHHHHH
Confidence            34455555566655555544332    11  2456778889999999999888888888765322111    22456666


Q ss_pred             HhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhH
Q 008827           84 SLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK  162 (552)
Q Consensus        84 ~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~  162 (552)
                      +-|++ ++.+|..|+.+|+++.  .++..        ...++.+.++++|+++.||..|+.++..++...++.    +..
T Consensus        93 kdL~~~n~~ir~~AL~~L~~i~--~~~~~--------~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~----~~~  158 (591)
T 2vgl_B           93 KDCEDPNPLIRALAVRTMGCIR--VDKIT--------EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM----VED  158 (591)
T ss_dssp             GGSSSSSHHHHHHHHHHHHTCC--SGGGH--------HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC----HHH
T ss_pred             HHcCCCCHHHHHHHHHHHHcCC--hHHHH--------HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh----ccc
Confidence            66776 6789999999999875  33332        234567888999999999999999999999865542    333


Q ss_pred             HhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH
Q 008827          163 TKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC  241 (552)
Q Consensus       163 ~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~  241 (552)
                      .++++.|.++|++ ++.|+..|+.+|..+..+++.........+.++.|++.+.+.+  +-.+...+++++.++..++..
T Consensus       159 ~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~--~~~q~~il~~l~~l~~~~~~~  236 (591)
T 2vgl_B          159 QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT--EWGQIFILDCLSNYNPKDDRE  236 (591)
T ss_dssp             HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC--HHHHHHHHHHHHTSCCCSHHH
T ss_pred             ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC--chHHHHHHHHHHHhCCCChHH
Confidence            6899999999985 4578999999999998776531000011234667777776653  667778888998888654432


Q ss_pred             HHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccc---ccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008827          242 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSI---KNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN  318 (552)
Q Consensus       242 ~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~---~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~n  318 (552)
                      .     ..+++.+..++++.++.|+..|++++..+....   +..-+  .....+.++|+.++. +++++|..|+.+|..
T Consensus       237 ~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~--~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~  308 (591)
T 2vgl_B          237 A-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYN--MLLKKLAPPLVTLLS-GEPEVQYVALRNINL  308 (591)
T ss_dssp             H-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHH--HHHHHTHHHHHHHTT-SCHHHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHH--HHHHHHHHHHHHHhc-CCccHHHHHHHHHHH
Confidence            2     346888889999999999999999999987531   11111  122456678887664 889999999999999


Q ss_pred             hhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHH
Q 008827          319 IVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQAL  398 (552)
Q Consensus       319 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~  398 (552)
                      ++...+..    +. ..+..+.... +++..+|..+++.+.+++...+   -.     ..++.|...+.+.|.+++..++
T Consensus       309 i~~~~p~~----~~-~~~~~~~~~~-~d~~~Ir~~al~~L~~l~~~~n---v~-----~iv~~L~~~l~~~d~~~r~~~v  374 (591)
T 2vgl_B          309 IVQKRPEI----LK-QEIKVFFVKY-NDPIYVKLEKLDIMIRLASQAN---IA-----QVLAELKEYATEVDVDFVRKAV  374 (591)
T ss_dssp             HHHHCCST----TT-TCTTTTSCCT-TSCHHHHHHHHHHHHHTCCSST---HH-----HHHHHHHHHTTSSCHHHHHHHH
T ss_pred             HHHhChHH----HH-HHHHhheecc-CChHHHHHHHHHHHHHHCChhh---HH-----HHHHHHHHHHhcCCHHHHHHHH
Confidence            87543321    00 0111111111 2235566666666666543221   11     1233444555555666666666


Q ss_pred             HHHHHhhcCC
Q 008827          399 ALVRNLVDGR  408 (552)
Q Consensus       399 ~~L~~l~~~~  408 (552)
                      +++++++...
T Consensus       375 ~aI~~la~~~  384 (591)
T 2vgl_B          375 RAIGRCAIKV  384 (591)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHHhC
Confidence            6666665443

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.85  E-value=5.5e-20  Score=168.01  Aligned_cols=198  Identities=21%  Similarity=0.189  Sum_probs=169.8

Q ss_pred             cHHHHHHhcCCCCH--HHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 008827          250 VLKLVVDALAHDSS--DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR  327 (552)
Q Consensus       250 ~l~~lv~~L~~~~~--~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~  327 (552)
                      .+|.++++|+++++  .++..++++|.+++...+..+.. +.+.|++|+|+++|+++++++++.|+++|.||+.+.+.++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~-I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKR-VNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH-HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHH-HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            58999999999887  89999999999999765555655 7889999999999999999999999999999998888899


Q ss_pred             HHHHhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc----------------CCC
Q 008827          328 STFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC----------------DPE  390 (552)
Q Consensus       328 ~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~----------------~~~  390 (552)
                      ..+.+.|++|.|+++|. +++..++++++.+|.||+..  ++.|..+.+. +++.|++++.                ..+
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~--~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~  164 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN--DKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD  164 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC--hhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence            99999999999999998 57899999999999999763  4578888775 6899988763                136


Q ss_pred             hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccc-----CchhHHHHHHHHHHhhcCC
Q 008827          391 PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA-----SKAEIEIQGMYVLGNVATG  452 (552)
Q Consensus       391 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~-----~~~~v~~~a~~~L~~la~~  452 (552)
                      ++++++|.++|+|++..+++..+.+.+.+| +++.|+.++++.     .+.+.++.|..+|.|++..
T Consensus       165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~G-li~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDG-LIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTSTT-HHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCC-cHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            799999999999999887766666666656 789999988752     3568899999999999864

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.83  E-value=7.4e-18  Score=187.89  Aligned_cols=506  Identities=14%  Similarity=0.135  Sum_probs=328.8

Q ss_pred             cHHHHHHHHHHHHHHHcCCCCCC--cccccccchHHHHHhhcCC--CCcchHHHHHHHHhhcCChh-h-HHHHHhcCchH
Q 008827            7 YMEVVDAGARSLKMIYQSKMAPK--YDFLQEENMEFLLSLLNNE--SENVSGLGASIISHSCKTSL-E-QKLLFDAGVLK   80 (552)
Q Consensus         7 ~~~~~~~~l~~l~~l~~~~~~~~--~~~~~~~~i~~l~~ll~~~--~~~~~~~a~~~l~~~~~~~~-~-~~~l~~~g~i~   80 (552)
                      +..+...+++++..++..-....  ..-+-...++.+...+.++  ++.++..++.++..+...-. + .........++
T Consensus       148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~  227 (861)
T 2bpt_A          148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ  227 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHH
Confidence            77888999999998875421110  0111234567778888876  67899999999988643111 1 00001122456


Q ss_pred             HHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCC-ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCC----
Q 008827           81 RLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTG-RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC----  154 (552)
Q Consensus        81 ~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~-~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~----  154 (552)
                      .+...+.+ ++.+|..++.+|..++...+.......    . ..++.+...+.+.+..+|..|..++..++.....    
T Consensus       228 ~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l----~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~  303 (861)
T 2bpt_A          228 VVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM----EQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYE  303 (861)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH----HHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            66666665 679999999999998865433211111    2 3455566678899999999999999988764210    


Q ss_pred             ------------cchhhhhHHhHHHHHHHhcCCC--------CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhh
Q 008827          155 ------------YLQDVGIKTKLINNLLELLDDP--------GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHL  214 (552)
Q Consensus       155 ------------~~~~~~~~~g~i~~Lv~ll~~~--------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L  214 (552)
                                  +... ..-..++|.++..+.+.        ..++..+..+|..++.....   .+. ...++.+.+.+
T Consensus       304 ~~~~~~~~~~~~~~~~-~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~-~~l~~~l~~~l  378 (861)
T 2bpt_A          304 LAQFPQSPLQSYNFAL-SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---HIL-EPVLEFVEQNI  378 (861)
T ss_dssp             HHHCTTCSCCCCCHHH-HHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHT
T ss_pred             hhhccCCchhhHHHHH-HHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH---hHH-HHHHHHHHHHc
Confidence                        0011 11256888998888631        24677888888887742211   000 11234444555


Q ss_pred             hcCCCChhhHHHHHHHHHHhhcCCh-hHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc-cchhhhccC
Q 008827          215 QKGSLHPRRFEGILLALADMCSKLE-CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL-SAGSFMNET  292 (552)
Q Consensus       215 ~~~~~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~-~~~~~~~~~  292 (552)
                      .+.  ++..|+.++.+++.++.... ..-.... ..++|.++..++++++.+|..+++++..++...... ... -.-..
T Consensus       379 ~~~--~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~~  454 (861)
T 2bpt_A          379 TAD--NWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ-QHLPG  454 (861)
T ss_dssp             TCS--SHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT-TTHHH
T ss_pred             CCC--ChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH-HHHHH
Confidence            543  48899999999999986432 2111122 257899999999999999999999999998653221 001 12346


Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-----hhHHHHHhhCcHHHHHHhhcCCC--HHHHHHHHHHHHHhcccC
Q 008827          293 IVIPLVRLLDDTSTAVQVAALGAISNIVVDFT-----TRRSTFIRLGGVKLLVQLSKSMD--STIRLNALRALRNLIFLA  365 (552)
Q Consensus       293 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~-----~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~  365 (552)
                      ++|.++..+.++ +.++..|++++.+++....     .... .+ ...++.|+..+.+.+  +.+|..++.+++.++...
T Consensus       455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~-~~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~  531 (861)
T 2bpt_A          455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYN-FY-PALVDGLIGAANRIDNEFNARASAFSALTTMVEYA  531 (861)
T ss_dssp             HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGG-GH-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHH-HH-HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc
Confidence            788888888776 9999999999999876421     1111 11 356788888887543  789999999999998765


Q ss_pred             ChHhHHHHHHhhcHHHHHhhhcC---------------CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHh
Q 008827          366 EDKCKEEIFMELTASLLASLICD---------------PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL  430 (552)
Q Consensus       366 ~~~~~~~i~~~~~~~~l~~ll~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L  430 (552)
                      +.+.... +. ..++.+++.+.+               ....++..++.++.+++............   .+++.+...+
T Consensus       532 ~~~~~~~-~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~l~~~l~~~l  606 (861)
T 2bpt_A          532 TDTVAET-SA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD---MLMGLFFRLL  606 (861)
T ss_dssp             CGGGHHH-HH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH---HHHHHHHHHH
T ss_pred             chhhHHH-HH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH---HHHHHHHHHH
Confidence            5433222 22 234455554432               13457888999999988654432221111   1677777888


Q ss_pred             cccCch-hHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHH
Q 008827          431 RIASKA-EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGR  509 (552)
Q Consensus       431 ~~~~~~-~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  509 (552)
                      ++ .+. .+++.++.+++.++..........+        ..+++.+...+.++++.+|..++.+++.++...  +  +.
T Consensus       607 ~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--------~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~--~--~~  673 (861)
T 2bpt_A          607 EK-KDSAFIEDDVFYAISALAASLGKGFEKYL--------ETFSPYLLKALNQVDSPVSITAVGFIADISNSL--E--ED  673 (861)
T ss_dssp             HS-TTGGGTHHHHHHHHHHHHHHHGGGGHHHH--------HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT--G--GG
T ss_pred             cc-CCCCcHHHHHHHHHHHHHHHHhhhHHHHH--------HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh--c--hh
Confidence            77 555 8999999999998863332233333        357788999998888999999999999988421  1  11


Q ss_pred             HHHHHHCCcHHHHHhhhcCCC--ccHHHHHHHHHHHHhhh
Q 008827          510 LVKLHDAGIVSHVKNMVNDPC--LDVKLRVKTALEQFNSF  547 (552)
Q Consensus       510 ~~~l~~~g~~~~L~~ll~~~~--~~v~~~a~~al~~~~~~  547 (552)
                      .... -..+++.+.+.+++++  +++|+.+..+++.+...
T Consensus       674 ~~~~-~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~  712 (861)
T 2bpt_A          674 FRRY-SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN  712 (861)
T ss_dssp             GHHH-HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred             ccch-HHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence            1111 1345677777777654  78999999999888764

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.82  E-value=1.3e-16  Score=162.70  Aligned_cols=452  Identities=12%  Similarity=0.122  Sum_probs=327.6

Q ss_pred             ccchHHHHHhhcC-CCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC---CHHHHHHHHHHHHHHhcCChhh
Q 008827           35 EENMEFLLSLLNN-ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG---SLIQRDASLESIATIFKNNPEV  110 (552)
Q Consensus        35 ~~~i~~l~~ll~~-~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~---~~~v~~~al~~L~~l~~~~~~~  110 (552)
                      .++|+.|..-+++ .-.+-|+.|..-|..+++.  ++.. +..++++.|+..|+.   +.++-..++.+|.++...+++.
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~--y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~   96 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK--YRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE   96 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT--TTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH--hHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence            5678888888764 4467889999999999764  3332 346678999999985   3466677999998865443221


Q ss_pred             h-------------hhhcc--ccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhH-HhHHHHHHHhcC
Q 008827          111 V-------------SQFVG--PDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK-TKLINNLLELLD  174 (552)
Q Consensus       111 ~-------------~~~~~--~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~-~g~i~~Lv~ll~  174 (552)
                      .             ..+.+  ..+.+.++.++.++++++..+|..++.+|..++...+...++.+.. .++++.|+.+|+
T Consensus        97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~  176 (651)
T 3grl_A           97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA  176 (651)
T ss_dssp             -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred             cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence            0             01110  1246788999999999999999999999999999887666777775 499999999999


Q ss_pred             CC-CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCC--ChhhHHHHHHHHHHhhcCChhHHHHHHhcccH
Q 008827          175 DP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSL--HPRRFEGILLALADMCSKLECCRSRCLSLQVL  251 (552)
Q Consensus       175 ~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~--~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l  251 (552)
                      ++ ..+|.++...|.++..++++.++.+.-.|++++|++++..+..  -..+.+.++..+.+|...++.++..+.+.|++
T Consensus       177 d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i  256 (651)
T 3grl_A          177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYI  256 (651)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCG
T ss_pred             CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCH
Confidence            65 4579999999999999999999999889999999999976531  13577899999999999999999999999999


Q ss_pred             HHHHHhcCCCCHH------H---HHHHHHHHHHhhccccc-----ccchhhhccCcHHHHHHhhcCC--CHHHHHHHHHH
Q 008827          252 KLVVDALAHDSSD------V---RSAACMCLRSVSRSIKN-----LSAGSFMNETIVIPLVRLLDDT--STAVQVAALGA  315 (552)
Q Consensus       252 ~~lv~~L~~~~~~------v---~~~a~~~L~~ls~~~~~-----~~~~~~~~~~~i~~Lv~lL~~~--~~~v~~~a~~a  315 (552)
                      |.+..+++.+...      .   ...+..+++-+......     ..+..+.+.|+++.|++++..+  ...++..|..+
T Consensus       257 ~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~t  336 (651)
T 3grl_A          257 QRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINT  336 (651)
T ss_dssp             GGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred             HHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHH
Confidence            9999999744311      1   12345566666443111     1222378899999999998754  67899999999


Q ss_pred             HHHhhcCCchhHHHHHhhC---------cHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCChHhHHHHHHhh--------
Q 008827          316 ISNIVVDFTTRRSTFIRLG---------GVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFMEL--------  377 (552)
Q Consensus       316 L~nl~~~~~~~~~~~~~~g---------~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~--------  377 (552)
                      ++.+..+++..+..+.+..         .+..|+.++.+ ....+|..++.++..+..+ +++.+..+....        
T Consensus       337 la~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~-N~~~Q~~i~~~llp~~~~~~  415 (651)
T 3grl_A          337 VSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK-NQKGQGEIVSTLLPSTIDAT  415 (651)
T ss_dssp             HHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTSSCCCCCT
T ss_pred             HHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC-CHHHHHHHHHhcCCcccccC
Confidence            9999999988887776532         34444555544 4578999999999988774 345555555431        


Q ss_pred             ----cH-HHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhh-----cC----chHHHHHHHhcccCchhHHHHHH
Q 008827          378 ----TA-SLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAE-----DG----IILDAVGRQLRIASKAEIEIQGM  443 (552)
Q Consensus       378 ----~~-~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-----~~----~~~~~l~~~L~~~~~~~v~~~a~  443 (552)
                          .. ..+..-+.+.|+.-..-|..++.++..++++..+.+++-     .|    ..++.++..|....++.++..-+
T Consensus       416 ~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL  495 (651)
T 3grl_A          416 GNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLL  495 (651)
T ss_dssp             TSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHH
T ss_pred             CCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHH
Confidence                01 124455556677655668888999998877665555441     11    25777777776546778888888


Q ss_pred             HHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC--CC--hhHHHHHHHHHH
Q 008827          444 YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS--ND--SRLRTAAVWAVL  496 (552)
Q Consensus       444 ~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~--~~--~~~~~~a~~~l~  496 (552)
                      ..|..+..+++.....+++      +..-++.|+..+.+  ++  .-++--++..|+
T Consensus       496 ~LL~~WL~e~p~AV~dFL~------~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLG  546 (651)
T 3grl_A          496 MLLCTWLSNCPIAVTHFLH------NSANVPFLTGQIAENLGEEEQLVQGLCALLLG  546 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHH------STTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCChHHHHHHHc------CCchHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence            8888888888888887876      24567899988753  22  334444444444

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.81  E-value=6.3e-18  Score=188.44  Aligned_cols=511  Identities=15%  Similarity=0.108  Sum_probs=332.8

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCC-CCcchHHHHHHHHhhcCChhhHH---HHHhcCch
Q 008827            4 LKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNE-SENVSGLGASIISHSCKTSLEQK---LLFDAGVL   79 (552)
Q Consensus         4 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~~~~~a~~~l~~~~~~~~~~~---~l~~~g~i   79 (552)
                      .+++..+...+..++..+....... ..+  ++.++.++..++++ ++.+++.+..++..+++......   .-.....+
T Consensus       105 ~~~~~~vr~~~~~~l~~i~~~~~p~-~~w--~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll  181 (861)
T 2bpt_A          105 VSIEPRIANAAAQLIAAIADIELPH-GAW--PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNIL  181 (861)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHGGG-TCC--HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHhhCcc-ccc--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Confidence            3456677777778887775442110 112  46789999999887 88899999999998876321100   00112245


Q ss_pred             HHHHHhhcC---CHHHHHHHHHHHHHHhcCChhhhh-hhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCc
Q 008827           80 KRLTSLLGG---SLIQRDASLESIATIFKNNPEVVS-QFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCY  155 (552)
Q Consensus        80 ~~L~~lL~~---~~~v~~~al~~L~~l~~~~~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~  155 (552)
                      +.+...+.+   +..+|..++.+++.+...-..... ...   ....++.+...+.++++.+|..|..+|..+....+..
T Consensus       182 ~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~---~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~  258 (861)
T 2bpt_A          182 IAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGE---RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF  258 (861)
T ss_dssp             HHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHH---HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            666666765   468999999999987543221100 000   0124556667888999999999999999998765432


Q ss_pred             chhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHH-----------------HHHHHHhCcHHHHHHhhhcC
Q 008827          156 LQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDM-----------------QKLAFEVNGVDKLYNHLQKG  217 (552)
Q Consensus       156 ~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~-----------------~~~~~~~~~i~~L~~~L~~~  217 (552)
                      ... .....+++.+...+.+ +.+++..+...+..++......                 .+.. -...+|.++..+...
T Consensus       259 ~~~-~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~~ll~~l~~~  336 (861)
T 2bpt_A          259 MKP-YMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSS-IKDVVPNLLNLLTRQ  336 (861)
T ss_dssp             CHH-HHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHH-HHHHHHHHHHHTTCC
T ss_pred             HHH-HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHH-HHHHHHHHHHHHHhc
Confidence            221 2222567777777764 4578888988888876542210                 0111 134567888777653


Q ss_pred             C-----CChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccc-cccchhhhcc
Q 008827          218 S-----LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK-NLSAGSFMNE  291 (552)
Q Consensus       218 ~-----~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~-~~~~~~~~~~  291 (552)
                      +     .++.++..+..+|..++...+   ..+ -..+++.+.+.+++.++.+|.+++.+++.++.... ..-..  .-.
T Consensus       337 ~~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~--~l~  410 (861)
T 2bpt_A          337 NEDPEDDDWNVSMSAGACLQLFAQNCG---NHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTY--YVH  410 (861)
T ss_dssp             CCC-CCCCCHHHHHHHHHHHHHHHHHG---GGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH--HHH
T ss_pred             ccccccccCcHHHHHHHHHHHHHHHcc---HhH-HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHH--HHH
Confidence            2     235688899999998875221   111 12467788888889999999999999999986532 11111  123


Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH-HHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCC----
Q 008827          292 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR-STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAE----  366 (552)
Q Consensus       292 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~----  366 (552)
                      .+++.++..+.++++.+|..+++++++++....... ..-.-...++.+++.+++. +.+|..+++++.+++...+    
T Consensus       411 ~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~  489 (861)
T 2bpt_A          411 QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATP  489 (861)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSS
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccc
Confidence            578889999999999999999999999885322100 0001135678888888776 8999999999999876421    


Q ss_pred             hHhHHHHHHhhcHHHHHhhhcCCC--hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccc-----------
Q 008827          367 DKCKEEIFMELTASLLASLICDPE--PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA-----------  433 (552)
Q Consensus       367 ~~~~~~i~~~~~~~~l~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~-----------  433 (552)
                      ...... + ...++.+++++.+.+  +.++..++.+++.+....++.....+..   +++.+...|...           
T Consensus       490 ~~l~~~-~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~---l~~~l~~~l~~~~~~~~~i~~~~  564 (861)
T 2bpt_A          490 SPIYNF-Y-PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSAS---ISTFVMDKLGQTMSVDENQLTLE  564 (861)
T ss_dssp             CGGGGG-H-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHH---HHHHHHHHHHHHTTSCGGGCCHH
T ss_pred             hhhHHH-H-HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHH---HHHHHHHHHHHHHhhhcccCChh
Confidence            111111 1 234677888887544  7899999999999987655433333332   455555555421           


Q ss_pred             ---CchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCCh-hHHHHHHHHHHhhcCCCCCCCHHH
Q 008827          434 ---SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS-RLRTAAVWAVLNLTCSSSPGSSGR  509 (552)
Q Consensus       434 ---~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~-~~~~~a~~~l~~l~~~~~~~~~~~  509 (552)
                         ....++..++.+|++++.+........+        ..+++.+...+++.+. .++..+..+++.++...  + .+.
T Consensus       565 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--------~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~--~-~~~  633 (861)
T 2bpt_A          565 DAQSLQELQSNILTVLAAVIRKSPSSVEPVA--------DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASL--G-KGF  633 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--------HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHH--G-GGG
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--------HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHH--h-hhH
Confidence               2345778899999988864432222222        3566788888988877 89999999999998411  1 111


Q ss_pred             HHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          510 LVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       510 ~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      ...+  ..+++.|.+.+++++++++..+..++..+.+.
T Consensus       634 ~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~  669 (861)
T 2bpt_A          634 EKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNS  669 (861)
T ss_dssp             HHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            1222  22678888888877888999888888877654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.80  E-value=6.3e-17  Score=171.75  Aligned_cols=467  Identities=12%  Similarity=0.109  Sum_probs=322.8

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHH
Q 008827            4 LKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLT   83 (552)
Q Consensus         4 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~   83 (552)
                      .+++..+.+.+-.++..+....    .+.. .-++..+..-|+++++.++..|..+++++. .++.-.     ..++.+.
T Consensus        59 ~s~~~~~Krl~yl~l~~~~~~~----~e~~-~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~~-----~l~~~l~  127 (591)
T 2vgl_B           59 QTDNLELKKLVYLYLMNYAKSQ----PDMA-IMAVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKITE-----YLCEPLR  127 (591)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHS----HHHH-HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGHH-----HHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccC----chHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHHH-----HHHHHHH
Confidence            4566677777777777665421    1221 235677888888999999999999999986 333221     2357788


Q ss_pred             HhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhH
Q 008827           84 SLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK  162 (552)
Q Consensus        84 ~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~  162 (552)
                      .+|.+ ++.||..|+.|+..++..+++...      +.+.++.+..++.|+++.|+..|+.+|..++...+... .....
T Consensus       128 ~~L~d~~~~VRk~A~~al~~i~~~~p~~~~------~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~-~~~l~  200 (591)
T 2vgl_B          128 KCLKDEDPYVRKTAAVCVAKLHDINAQMVE------DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN-LLDLN  200 (591)
T ss_dssp             HHSSCSCHHHHHHHHHHHHHHHHSSCCCHH------HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC-SCCCH
T ss_pred             HHcCCCChHHHHHHHHHHHHHHhhChhhcc------cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc-chhcc
Confidence            88887 789999999999999876655421      13466788889999999999999999999988654321 01223


Q ss_pred             HhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC---C
Q 008827          163 TKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK---L  238 (552)
Q Consensus       163 ~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~---~  238 (552)
                      .+.++.|++.+. .++..+.....+++++...++...     ...++.+..++++.  ++.++..|++++..+...   +
T Consensus       201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~--~~~V~~ea~~~i~~l~~~~~~~  273 (591)
T 2vgl_B          201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHA--NSAVVLSAVKVLMKFLELLPKD  273 (591)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSS--TTHHHHHHHHHHHHSCCSCCBT
T ss_pred             HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCC--ChHHHHHHHHHHHHHhhccCCC
Confidence            456777777776 345567778888888876554322     23466777777765  478999999999998641   2


Q ss_pred             hhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008827          239 ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN  318 (552)
Q Consensus       239 ~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~n  318 (552)
                      ++....+ -..+.+.++.++. +++.+|..++.++..+....+..     .. ..+..+.... +++..++..|+..+.+
T Consensus       274 ~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~-----~~-~~~~~~~~~~-~d~~~Ir~~al~~L~~  344 (591)
T 2vgl_B          274 SDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEI-----LK-QEIKVFFVKY-NDPIYVKLEKLDIMIR  344 (591)
T ss_dssp             TBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCST-----TT-TCTTTTSCCT-TSCHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHH-----HH-HHHHhheecc-CChHHHHHHHHHHHHH
Confidence            2322222 2345677776664 88999999999999997653332     11 1122222222 4449999999999999


Q ss_pred             hhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHH
Q 008827          319 IVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQAL  398 (552)
Q Consensus       319 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~  398 (552)
                      ++... . .+     .+++.|.+++.+.+..+|..+++++++++...++ .     ....++.+++++.+....+...++
T Consensus       345 l~~~~-n-v~-----~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~-~-----~~~~v~~Ll~ll~~~~~~v~~e~i  411 (591)
T 2vgl_B          345 LASQA-N-IA-----QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ-S-----AERCVSTLLDLIQTKVNYVVQEAI  411 (591)
T ss_dssp             TCCSS-T-HH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH-H-----HHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HCChh-h-HH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh-H-----HHHHHHHHHHHHcccchHHHHHHH
Confidence            88543 2 21     3567788999999999999999999999874321 1     234578999999999999999999


Q ss_pred             HHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHH
Q 008827          399 ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIK  478 (552)
Q Consensus       399 ~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~  478 (552)
                      ..++++....++..     +.  +++.|...+.+...++++..++|+||.++...++ .            ..++..+++
T Consensus       412 ~~l~~ii~~~p~~~-----~~--~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~-~------------~~~l~~l~~  471 (591)
T 2vgl_B          412 VVIRDIFRKYPNKY-----ES--IIATLCENLDSLDEPDARAAMIWIVGEYAERIDN-A------------DELLESFLE  471 (591)
T ss_dssp             HHHHHHHHHSCSSC-----CT--THHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT-H------------HHHHHHHST
T ss_pred             HHHHHHHHHCcchH-----HH--HHHHHHHHHHhccCHHHHHHHHHHHHcccccccC-H------------HHHHHHHHH
Confidence            89999876555321     11  5677777787657789999999999999865432 1            233345555


Q ss_pred             hhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhh-hcC-CCccHHHHHHHHHHHHhh
Q 008827          479 FLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNM-VND-PCLDVKLRVKTALEQFNS  546 (552)
Q Consensus       479 lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~l-l~~-~~~~v~~~a~~al~~~~~  546 (552)
                      .+.+.++.+|..++.++..+.....+...+         .+..+.+. ..| .++|||+||...+.-+..
T Consensus       472 ~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~---------~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~  532 (591)
T 2vgl_B          472 GFHDESTQVQLTLLTAIVKLFLKKPSETQE---------LVQQVLSLATQDSDNPDLRDRGYIYWRLLST  532 (591)
T ss_dssp             TCSSSCHHHHHHHHHHHHHHHTTCCSTTHH---------HHHHHHHHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred             hhccCCHHHHHHHHHHHHHHHhcCchHHHH---------HHHHHHHHhhhcCCChHHHHHHHHHHHHHCc
Confidence            555678899999999999998521111111         23334443 344 678999999888776643

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.79  E-value=1.5e-16  Score=177.67  Aligned_cols=506  Identities=12%  Similarity=0.088  Sum_probs=326.2

Q ss_pred             cHHHHHHHHHHHHHHHcCCCCCCccc--ccccchHHHHHhhcCC--CCcchHHHHHHHHhhcCChh-h-HHHHHhcCchH
Q 008827            7 YMEVVDAGARSLKMIYQSKMAPKYDF--LQEENMEFLLSLLNNE--SENVSGLGASIISHSCKTSL-E-QKLLFDAGVLK   80 (552)
Q Consensus         7 ~~~~~~~~l~~l~~l~~~~~~~~~~~--~~~~~i~~l~~ll~~~--~~~~~~~a~~~l~~~~~~~~-~-~~~l~~~g~i~   80 (552)
                      +..+...++++|..+...-. + ..+  +-+..++.+...++++  +..++..+..++..+...-. + .........++
T Consensus       143 ~~~~r~~al~~l~~l~~~~~-~-~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~  220 (876)
T 1qgr_A          143 TEHMKESTLEAIGYICQDID-P-EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ  220 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHHSC-H-HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcC-H-hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            67788999999998875421 1 111  1235677788888876  56789999999998764211 1 10111122566


Q ss_pred             HHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCC------
Q 008827           81 RLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASP------  153 (552)
Q Consensus        81 ~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~------  153 (552)
                      .+...+.+ ++++|..++.+|..++...+.......   ....++.++..+++.+..+|..|..++..++....      
T Consensus       221 ~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~  297 (876)
T 1qgr_A          221 VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM---GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA  297 (876)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH---TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhh
Confidence            67776765 678999999999999865543321111   12566777778889999999999999988876420      


Q ss_pred             -------------CcchhhhhHHhHHHHHHHhcCC--------CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHH
Q 008827          154 -------------CYLQDVGIKTKLINNLLELLDD--------PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYN  212 (552)
Q Consensus       154 -------------~~~~~~~~~~g~i~~Lv~ll~~--------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  212 (552)
                                   ........-...+|.+++.+.+        +..+|..|+.++..++.....   .++ ...++.+..
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~l~~l~~  373 (876)
T 1qgr_A          298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKE  373 (876)
T ss_dssp             HHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHH
T ss_pred             ccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH-HHHHHHHHH
Confidence                         0000000124578888888851        235677888888887643211   011 123455555


Q ss_pred             hhhcCCCChhhHHHHHHHHHHhhcCCh-hHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc-chhhhc
Q 008827          213 HLQKGSLHPRRFEGILLALADMCSKLE-CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS-AGSFMN  290 (552)
Q Consensus       213 ~L~~~~~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~-~~~~~~  290 (552)
                      .+.+.  ++.+|+.++++++.++.... +..... -.+++|.++..++++++.+|..|++++.+++...+... .. -.-
T Consensus       374 ~l~~~--~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~l  449 (876)
T 1qgr_A          374 HIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND-VYL  449 (876)
T ss_dssp             HTTCS--SHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST-TTH
T ss_pred             HccCC--ChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH-HHH
Confidence            55554  58999999999999986533 221122 23589999999999999999999999999987643210 01 123


Q ss_pred             cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc---------------hhHHHHHhhCcHHHHHHhhcCC---CHHHHH
Q 008827          291 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT---------------TRRSTFIRLGGVKLLVQLSKSM---DSTIRL  352 (552)
Q Consensus       291 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~---------------~~~~~~~~~g~i~~L~~ll~~~---~~~v~~  352 (552)
                      ..+++.++..+.++ +.++..|+++|.+++....               ... ... ...++.|...+...   +..+|.
T Consensus       450 ~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~il~~L~~~l~~~~~~~~~~r~  526 (876)
T 1qgr_A          450 APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLS-SSF-ELIVQKLLETTDRPDGHQNNLRS  526 (876)
T ss_dssp             HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSST-TTH-HHHHHHHHHHTTSCSSCSTTHHH
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhh-HhH-HHHHHHHHHHHhCcCcchhhHHH
Confidence            46778888888875 9999999999999885321               011 111 35778888887764   357888


Q ss_pred             HHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc-----------CCC----hhHHHHHHHHHHHhhcCCc-chHHHHH
Q 008827          353 NALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-----------DPE----PSVQEQALALVRNLVDGRI-NSVEYIF  416 (552)
Q Consensus       353 ~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~-----------~~~----~~v~~~a~~~L~~l~~~~~-~~~~~i~  416 (552)
                      .+..+++.++...+.+... .+ ...++.+++.+.           +.|    ++++..++.++..++..-. +.....+
T Consensus       527 ~~~~~l~~l~~~~~~~~~~-~~-~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  604 (876)
T 1qgr_A          527 SAYESLMEIVKNSAKDCYP-AV-QKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS  604 (876)
T ss_dssp             HHHHHHHHHHHTCCSTTHH-HH-HHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH
T ss_pred             HHHHHHHHHHHHCchhhHH-HH-HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH
Confidence            8999998887654433222 22 223444444332           222    4567888999999987654 3333222


Q ss_pred             hhcCchHHHHHHHhcccC-chhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC-ChhHHHHHHHH
Q 008827          417 AEDGIILDAVGRQLRIAS-KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSRLRTAAVWA  494 (552)
Q Consensus       417 ~~~~~~~~~l~~~L~~~~-~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~~~a~~~  494 (552)
                      ..   +++.+...+.+.. +..++..++.+++.++..........+        ..+++.+...|.+. +..+|..|+++
T Consensus       605 ~~---l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--------~~~~~~l~~~l~~~~~~~vr~~a~~~  673 (876)
T 1qgr_A          605 DV---VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM--------EAFKPFLGIGLKNYAEYQVCLAAVGL  673 (876)
T ss_dssp             HH---HHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH--------HHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred             HH---HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHH--------HHHHHHHHHHHcCcchHHHHHHHHHH
Confidence            21   6788888887632 247899999999998863222222223        34668888888886 88999999999


Q ss_pred             HHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcC--CCccHHHHHHHHHHHHhh
Q 008827          495 VLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVND--PCLDVKLRVKTALEQFNS  546 (552)
Q Consensus       495 l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~--~~~~v~~~a~~al~~~~~  546 (552)
                      ++.++...  +  +..... -..+++.|.+.+++  .+.+++..+.++++.+..
T Consensus       674 l~~l~~~~--~--~~~~~~-~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~  722 (876)
T 1qgr_A          674 VGDLCRAL--Q--SNIIPF-CDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL  722 (876)
T ss_dssp             HHHHHHHH--G--GGGHHH-HHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--H--Hhhhhh-HHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHH
Confidence            99998411  1  111221 13457778787765  356899999999998875

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.78  E-value=2.5e-16  Score=181.90  Aligned_cols=513  Identities=13%  Similarity=0.096  Sum_probs=342.4

Q ss_pred             CCCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHH
Q 008827            3 LLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRL   82 (552)
Q Consensus         3 ~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L   82 (552)
                      +.++|+.....|+..|.+....+...-.+......++.+++.|.++++.+|..|+.+|..++......   .....++.+
T Consensus        15 l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~---~~~~i~~~L   91 (1230)
T 1u6g_C           15 MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTL   91 (1230)
T ss_dssp             TTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH---HHHHHHHHH
T ss_pred             cCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHH
Confidence            46789999999999999887654332111122356788999999888999999999999987543221   112356677


Q ss_pred             HHhhcC-CHHHHHHHHHHHHHHhcCChhhh--hhhccccCCccHHHHHHHHh-cCChhhHHHHHHHHHHHhhhCCCcchh
Q 008827           83 TSLLGG-SLIQRDASLESIATIFKNNPEVV--SQFVGPDTGRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQD  158 (552)
Q Consensus        83 ~~lL~~-~~~v~~~al~~L~~l~~~~~~~~--~~~~~~~~~~~l~~l~~ll~-~~~~~vr~~A~~~L~~l~~~~~~~~~~  158 (552)
                      ...+.+ ++.+|..+..+|+.++..-....  ..+........++.++..++ ++++.+|..|..+|..++...+.....
T Consensus        92 l~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~  171 (1230)
T 1u6g_C           92 CTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN  171 (1230)
T ss_dssp             HHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH
Confidence            777765 56889999999999875432210  00000001356778888888 588999999999999998654332221


Q ss_pred             hhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC
Q 008827          159 VGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK  237 (552)
Q Consensus       159 ~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~  237 (552)
                        .....++.|++.+.+ ++.+|..|+.++..++...+..   . -...++.+++.|.+.. ++..+..++.+++.++..
T Consensus       172 --~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~-~~~~r~~a~~~l~~l~~~  244 (1230)
T 1u6g_C          172 --FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKND-SMSTTRTYIQCIAAISRQ  244 (1230)
T ss_dssp             --THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTC-SSCSCTTHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHH
Confidence              235688888888874 4578999999999998755431   1 1235788888887653 245677788888888753


Q ss_pred             ChhHHHHHH--hcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC------------
Q 008827          238 LECCRSRCL--SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD------------  303 (552)
Q Consensus       238 ~~~~~~~~~--~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~------------  303 (552)
                      .+.   .+.  -..++|.++..++++++++|..+..++..++...+..-..  .-..++|.++..+..            
T Consensus       245 ~~~---~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~--~l~~li~~ll~~l~~d~~~~~~~d~~~  319 (1230)
T 1u6g_C          245 AGH---RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYP--HVSTIINICLKYLTYDPNYNYDDEDED  319 (1230)
T ss_dssp             SSG---GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHH--HHHHHHHHHTTCCCCC-----------
T ss_pred             hHH---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHH--hHHHHHHHHHHHhCCCCCCCCcccccc
Confidence            221   111  1358999999999999999999999999997754321111  223455555555531            


Q ss_pred             -------------------------CCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827          304 -------------------------TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL  358 (552)
Q Consensus       304 -------------------------~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL  358 (552)
                                               ..+++|..|+.++..++...+.....++ ...++.++..+.+.++.+|..++.++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l  398 (1230)
T 1u6g_C          320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAY  398 (1230)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHH
T ss_pred             cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHH
Confidence                                     1245788999999998875443222333 46778888888888999999999988


Q ss_pred             HHhcccCCh---------------HhHHHH--HHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc
Q 008827          359 RNLIFLAED---------------KCKEEI--FMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI  421 (552)
Q Consensus       359 ~~l~~~~~~---------------~~~~~i--~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~  421 (552)
                      ..++.....               .+...+  .-...++.+.+.++++++.++..++.+++.++...++.....+..   
T Consensus       399 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~---  475 (1230)
T 1u6g_C          399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV---  475 (1230)
T ss_dssp             HHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHH---
T ss_pred             HHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHH---
Confidence            877642110               011111  112346667777999999999999999999886544322211211   


Q ss_pred             hHHHHHHHhcccCc--hhHHHHHHHHHHhhcCC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhh
Q 008827          422 ILDAVGRQLRIASK--AEIEIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNL  498 (552)
Q Consensus       422 ~~~~l~~~L~~~~~--~~v~~~a~~~L~~la~~-~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l  498 (552)
                      +++.+...|.+ ++  ..++..++..+..+... .+......+        ..+++.++..+++.+..++..|+.++..+
T Consensus       476 ll~~l~~~L~d-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l--------~~llp~L~~~l~d~~~~v~~~al~~l~~l  546 (1230)
T 1u6g_C          476 LVPGIIFSLND-KSSSSNLKIDALSCLYVILCNHSPQVFHPHV--------QALVPPVVACVGDPFYKITSEALLVTQQL  546 (1230)
T ss_dssp             HHHHHHHHTTC-SSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH--------TTTHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-CCCcchHHHHHHHHHHHHHHhCCHHHHHhHH--------HHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence            67788888876 43  47899999998888642 222223333        46778999999999999988898888888


Q ss_pred             cCCCCC-------CCHHHHHHHHHCCcHHHHHhhh--cCCCccHHHHHHHHHHHHhhhc
Q 008827          499 TCSSSP-------GSSGRLVKLHDAGIVSHVKNMV--NDPCLDVKLRVKTALEQFNSFD  548 (552)
Q Consensus       499 ~~~~~~-------~~~~~~~~l~~~g~~~~L~~ll--~~~~~~v~~~a~~al~~~~~~~  548 (552)
                      +..-..       .......     .+++.+.+.+  .|+++++|+.|..+++.+.+..
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~-----~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~  600 (1230)
T 1u6g_C          547 VKVIRPLDQPSSFDATPYIK-----DLFTCTIKRLKAADIDQEVKERAISCMGQIICNL  600 (1230)
T ss_dssp             HHHHCCSSSCCCCCCHHHHH-----HHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCcccccccchHHHHH-----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence            721000       1122222     2467777777  5677889999999999988763

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.77  E-value=1.1e-16  Score=178.77  Aligned_cols=508  Identities=12%  Similarity=0.108  Sum_probs=312.2

Q ss_pred             cHHHHHHHHHHHHHHHcCCCC-----CCccc--cc----ccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHh
Q 008827            7 YMEVVDAGARSLKMIYQSKMA-----PKYDF--LQ----EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFD   75 (552)
Q Consensus         7 ~~~~~~~~l~~l~~l~~~~~~-----~~~~~--~~----~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~   75 (552)
                      +..+...|...|++.......     .+..|  +.    ...-+.++..|.++++.+ ..++.++..++.......  .-
T Consensus        50 ~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~--~w  126 (876)
T 1qgr_A           50 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVN--QW  126 (876)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGT--CC
T ss_pred             CHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCccc--cc
Confidence            456667777788876533210     00111  11    123345888888888888 899999988874321100  01


Q ss_pred             cCchHHHHHhhcC---CHHHHHHHHHHHHHHhcCC-hhhhhhhccccCCccHHHHHHHHhcC--ChhhHHHHHHHHHHHh
Q 008827           76 AGVLKRLTSLLGG---SLIQRDASLESIATIFKNN-PEVVSQFVGPDTGRTLSCIIEIVKDR--FARTRLLASLCLIVIR  149 (552)
Q Consensus        76 ~g~i~~L~~lL~~---~~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~vr~~A~~~L~~l~  149 (552)
                      ...++.++..+.+   ++.+|..++.+|+.++... ++.....    ....++.+...++++  ++.+|..|.+++..+.
T Consensus       127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~----~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~  202 (876)
T 1qgr_A          127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK----SNEILTAIIQGMRKEEPSNNVKLAATNALLNSL  202 (876)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG----HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhH----HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence            2356778887765   4578999999999998642 2211111    134456666777776  6899999999999887


Q ss_pred             hhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHH
Q 008827          150 NASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGIL  228 (552)
Q Consensus       150 ~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~  228 (552)
                      ..-..+.........+++.+.+++.+ +.+++..++.+|..++...+..-...+....++.++..+.+.  ++.++..++
T Consensus       203 ~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~al  280 (876)
T 1qgr_A          203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGI  280 (876)
T ss_dssp             GGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS--SHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHH
Confidence            53211111111123478888887763 467888999999998865543222222235567777766543  477899999


Q ss_pred             HHHHHhhcCChhH---------------H---HHH--HhcccHHHHHHhcC-------CCCHHHHHHHHHHHHHhhcccc
Q 008827          229 LALADMCSKLECC---------------R---SRC--LSLQVLKLVVDALA-------HDSSDVRSAACMCLRSVSRSIK  281 (552)
Q Consensus       229 ~aL~~l~~~~~~~---------------~---~~~--~~~~~l~~lv~~L~-------~~~~~v~~~a~~~L~~ls~~~~  281 (552)
                      ..+..++......               +   ...  .-..++|.+++.+.       ++++.+|.++..++..++...+
T Consensus       281 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~  360 (876)
T 1qgr_A          281 EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE  360 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc
Confidence            8888887531100               0   000  01246777888875       3467899999999999987643


Q ss_pred             cccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008827          282 NLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT-TRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN  360 (552)
Q Consensus       282 ~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~  360 (552)
                      .   . + -..+++.+...+.++++.+|..|++++++++.+.. ....... .+.++.++..+.++++.+|..|++++++
T Consensus       361 ~---~-~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~  434 (876)
T 1qgr_A          361 D---D-I-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGR  434 (876)
T ss_dssp             G---G-G-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             H---h-h-HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            1   1 2 23567777788889999999999999999997665 2222222 4688999999999999999999999999


Q ss_pred             hcccCChHh-HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCc--------------chHHHHHhhcCchHHH
Q 008827          361 LIFLAEDKC-KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRI--------------NSVEYIFAEDGIILDA  425 (552)
Q Consensus       361 l~~~~~~~~-~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~--------------~~~~~i~~~~~~~~~~  425 (552)
                      ++....+.. .... -...++.++..+.++ +.++..+++++.+++....              +.....+.   .+++.
T Consensus       435 ~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~---~il~~  509 (876)
T 1qgr_A          435 ICELLPEAAINDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFE---LIVQK  509 (876)
T ss_dssp             HHHHCGGGTSSTTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHH---HHHHH
T ss_pred             HHHhCchhcccHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHH---HHHHH
Confidence            987533211 0011 124567788888774 8899999999999875311              00000011   04444


Q ss_pred             HHHHhcccC--chhHHHH--------------------------------------------------------HHHHHH
Q 008827          426 VGRQLRIAS--KAEIEIQ--------------------------------------------------------GMYVLG  447 (552)
Q Consensus       426 l~~~L~~~~--~~~v~~~--------------------------------------------------------a~~~L~  447 (552)
                      +.+.+....  +..++..                                                        ++.++.
T Consensus       510 L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~  589 (876)
T 1qgr_A          510 LLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQ  589 (876)
T ss_dssp             HHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHH
Confidence            544444311  1233333                                                        334444


Q ss_pred             hhcCCCh-hhHHHHHHHhhHhhhhhhHHHHHHhhcCCC--hhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHh
Q 008827          448 NVATGKE-SHKEAVMDQLLLRAENKAQSCIIKFLQSND--SRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKN  524 (552)
Q Consensus       448 ~la~~~~-~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~  524 (552)
                      .++.... ......+        ..+++.+...+++.+  ..++..++.+++.++..    ..+....... .+++.|..
T Consensus       590 ~l~~~~~~~~~~~~~--------~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~~~-~~~~~l~~  656 (876)
T 1qgr_A          590 NVLRKVQHQDALQIS--------DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEV----LGGEFLKYME-AFKPFLGI  656 (876)
T ss_dssp             HHHTTSCHHHHHTTH--------HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHH----HGGGGGGGHH-HHHHHHHH
T ss_pred             HHHHHhChhhhhHHH--------HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHH----HHhhHHHHHH-HHHHHHHH
Confidence            4333221 1111111        345677788887764  47899999999998841    1111111111 25677888


Q ss_pred             hhcCC-CccHHHHHHHHHHHHhhh
Q 008827          525 MVNDP-CLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       525 ll~~~-~~~v~~~a~~al~~~~~~  547 (552)
                      .+++. +++++..+.+++..+...
T Consensus       657 ~l~~~~~~~vr~~a~~~l~~l~~~  680 (876)
T 1qgr_A          657 GLKNYAEYQVCLAAVGLVGDLCRA  680 (876)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHcCcchHHHHHHHHHHHHHHHHH
Confidence            77765 788999999988887653

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.77  E-value=6e-16  Score=164.78  Aligned_cols=396  Identities=13%  Similarity=0.088  Sum_probs=277.7

Q ss_pred             chHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhc
Q 008827           37 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV  115 (552)
Q Consensus        37 ~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~  115 (552)
                      +....+.++.+++...+..+.-.+..+++.+.....    -++..+.+-|++ ++.+|..|+.+|+.+..  ++..    
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~----  140 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL----LMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMC----  140 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHH----
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHH----
Confidence            345566777777777777777777777765433211    235566666776 67899999999999873  3332    


Q ss_pred             cccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCC
Q 008827          116 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEK  194 (552)
Q Consensus       116 ~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~  194 (552)
                          ...++.+.+++++.++.||..|+.++..++...++.     + .++++.+.+++.+ ++.|+..|+.+|..+...+
T Consensus       141 ----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~-----v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~  210 (618)
T 1w63_A          141 ----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL-----M-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS  210 (618)
T ss_dssp             ----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG-----G-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH-----H-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC
Confidence                245677888999999999999999999999865531     1 3678888888885 4578999999999998776


Q ss_pred             HHHHHHHHHhCcHHHHHHhhhcC-------------CCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC--
Q 008827          195 EDMQKLAFEVNGVDKLYNHLQKG-------------SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA--  259 (552)
Q Consensus       195 ~~~~~~~~~~~~i~~L~~~L~~~-------------~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~--  259 (552)
                      ++....  -...+|.+++.|.+-             ..++-.+..++.+|+.++..++....     ...+.+..+++  
T Consensus       211 ~~~~~~--~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~  283 (618)
T 1w63_A          211 PDMLAH--FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNT  283 (618)
T ss_dssp             HHHHHH--HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTS
T ss_pred             hHHHHH--HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhcc
Confidence            653111  135688888877641             12466778889999999876654332     23444544442  


Q ss_pred             ----CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCc
Q 008827          260 ----HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG  335 (552)
Q Consensus       260 ----~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~  335 (552)
                          +.+..+...+++++..+... +.     +. ..+++.|..++.+++++++..|..+|..++...+    ..+ ...
T Consensus       284 ~~~~~~~~aV~~ea~~~i~~l~~~-~~-----l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p----~~~-~~~  351 (618)
T 1w63_A          284 ETSKNVGNAILYETVLTIMDIKSE-SG-----LR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH----NAV-QRH  351 (618)
T ss_dssp             CCSSTHHHHHHHHHHHHHHHSCCC-HH-----HH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH----HHH-GGG
T ss_pred             ccccchHHHHHHHHHHHHHhcCCC-HH-----HH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH----HHH-HHH
Confidence                34568999999999887543 11     11 2467889999999999999999999999985432    222 246


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 008827          336 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI  415 (552)
Q Consensus       336 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  415 (552)
                      .+.++..+.+++..+|..++.+|..++...+  . ..     .++.+...+.+.+.+++..++.+++.++...+....+ 
T Consensus       352 ~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v-~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~-  422 (618)
T 1w63_A          352 RSTIVDCLKDLDVSIKRRAMELSFALVNGNN--I-RG-----MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRW-  422 (618)
T ss_dssp             HHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--T-HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHH-
T ss_pred             HHHHHHHccCCChhHHHHHHHHHHHHccccc--H-HH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHH-
Confidence            6788899999999999999999999987433  1 12     3466777777889999999999999999764433333 


Q ss_pred             HhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC--CChhHHHHHHH
Q 008827          416 FAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS--NDSRLRTAAVW  493 (552)
Q Consensus       416 ~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~--~~~~~~~~a~~  493 (552)
                            .++.+.++|.. ....++..++..+..+....++.+..+            ++.|..++.+  ....+...++|
T Consensus       423 ------~v~~ll~lL~~-~~~~v~~~~~~~l~~ii~~~p~l~~~~------------v~~L~~~l~~~~~~~~~~~~~~w  483 (618)
T 1w63_A          423 ------HIDTIMRVLTT-AGSYVRDDAVPNLIQLITNSVEMHAYT------------VQRLYKAILGDYSQQPLVQVAAW  483 (618)
T ss_dssp             ------HHHHHHHHHHH-TGGGSCSSHHHHHHHHHHHSCSTHHHH------------HHHHHHHHHHCCSCSHHHHHHHH
T ss_pred             ------HHHHHHHHHHh-ccchhHHHHHHHHHHHHhcChhHHHHH------------HHHHHHHHhcccccHHHHHHHHH
Confidence                  45666677766 445555556666666655444434333            3567777764  23444557999


Q ss_pred             HHHhhc
Q 008827          494 AVLNLT  499 (552)
Q Consensus       494 ~l~~l~  499 (552)
                      +|+.++
T Consensus       484 ilGEy~  489 (618)
T 1w63_A          484 CIGEYG  489 (618)
T ss_dssp             HHHHHH
T ss_pred             HHhhhH
Confidence            999997

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.76  E-value=9.1e-16  Score=156.51  Aligned_cols=373  Identities=13%  Similarity=0.130  Sum_probs=276.7

Q ss_pred             CccHHHHHH-HHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC---CCchhchHHHHHHHhhcCCH
Q 008827          120 GRTLSCIIE-IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD---PGRVGDEASFAFSSLIAEKE  195 (552)
Q Consensus       120 ~~~l~~l~~-ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~---~~~v~~~a~~~L~~l~~~~~  195 (552)
                      .++++.++. +-.+.-.+-|..|+..|..+++..+     ..+..++++.|+..|++   +.++-..+..+|.++...++
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~-----~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~   94 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR-----LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE   94 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT-----THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH-----HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence            345666665 3346777889999999999987533     24567899999999973   33455567788877665433


Q ss_pred             H-----------------HHHHH-HHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChh-HHHHHHhc-ccHHHHH
Q 008827          196 D-----------------MQKLA-FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC-CRSRCLSL-QVLKLVV  255 (552)
Q Consensus       196 ~-----------------~~~~~-~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~-~~~~~~~~-~~l~~lv  255 (552)
                      +                 +...+ .+.+.++.|+++|...  +..+|..++..|..++...+. +++.+... ++++.|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~--df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv  172 (651)
T 3grl_A           95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF--DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM  172 (651)
T ss_dssp             -------------CHHHHHHHHHHHSTHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred             cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc--cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence            2                 11122 3467899999998765  488999999999999987766 78888854 8999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCC----CHHHHHHHHHHHHHhhcCCchhHHHHH
Q 008827          256 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT----STAVQVAALGAISNIVVDFTTRRSTFI  331 (552)
Q Consensus       256 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~~~~~  331 (552)
                      .+|++....+|-.+...|..++++..+++.. +.-+|+++.|+.+++.+    ...+..-|...+.||...+..++..+.
T Consensus       173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQkl-VAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr  251 (651)
T 3grl_A          173 DLLADSREVIRNDGVLLLQALTRSNGAIQKI-VAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK  251 (651)
T ss_dssp             GGGGCSSHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhcCCHHHHHH-HHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999999999999999999997777665 66779999999999754    348899999999999999888898999


Q ss_pred             hhCcHHHHHHhhcCCCH------HHHHH---HHHHHHHhcccCC-----hHhHHHHHHhhcHHHHHhhhcCC--ChhHHH
Q 008827          332 RLGGVKLLVQLSKSMDS------TIRLN---ALRALRNLIFLAE-----DKCKEEIFMELTASLLASLICDP--EPSVQE  395 (552)
Q Consensus       332 ~~g~i~~L~~ll~~~~~------~v~~~---a~~aL~~l~~~~~-----~~~~~~i~~~~~~~~l~~ll~~~--~~~v~~  395 (552)
                      |.|.++.|..+++.+.+      ....+   ++.++.-++....     +.++..+.+.|+++.+++++.++  ...++.
T Consensus       252 Et~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~  331 (651)
T 3grl_A          252 EGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILT  331 (651)
T ss_dssp             HTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHH
T ss_pred             HcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHH
Confidence            99999999999975432      23334   4444455554322     24677888999999999998865  678999


Q ss_pred             HHHHHHHHhhcCCcchHHHHHhhc-------CchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhh
Q 008827          396 QALALVRNLVDGRINSVEYIFAED-------GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRA  468 (552)
Q Consensus       396 ~a~~~L~~l~~~~~~~~~~i~~~~-------~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~  468 (552)
                      .|+.+++.+..+++...+++.+..       ..++..+..++.+.....+|..+++++..+..+++.....++...+|..
T Consensus       332 ~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~  411 (651)
T 3grl_A          332 ETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPST  411 (651)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcc
Confidence            999999999999876655554432       1255666666666456789999999999999988765555655322211


Q ss_pred             hhh------hHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          469 ENK------AQSCIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       469 ~~~------~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      ..+      .-..+...+-+.|+.--.-|+.++.++..
T Consensus       412 ~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~  449 (651)
T 3grl_A          412 IDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQ  449 (651)
T ss_dssp             CCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred             cccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHc
Confidence            000      11234556666777555668888888886

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.72  E-value=1.4e-15  Score=175.75  Aligned_cols=511  Identities=12%  Similarity=0.095  Sum_probs=329.1

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhH------HHHHhcC
Q 008827            4 LKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQ------KLLFDAG   77 (552)
Q Consensus         4 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~------~~l~~~g   77 (552)
                      ..++..+...|+++|..+...-  + . -.-+..++.++..+.++++.+|..++.+|..++......      ..-.-..
T Consensus        58 ~d~~~~vR~~A~~~L~~l~~~~--~-~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~  133 (1230)
T 1u6g_C           58 EDKNGEVQNLAVKCLGPLVSKV--K-E-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKK  133 (1230)
T ss_dssp             TCSSHHHHHHHHHHHHHHHTTS--C-H-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHhC--C-H-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHH
Confidence            4567888889999999887432  1 1 122356788888888888899999999988876422111      1112234


Q ss_pred             chHHHHHhhc-C-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCc
Q 008827           78 VLKRLTSLLG-G-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCY  155 (552)
Q Consensus        78 ~i~~L~~lL~-~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~  155 (552)
                      .+|.|+..+. + ++.++..|+.+|+.++...+.....    .....++.++..+.++++.+|..|+.++..++...+..
T Consensus       134 llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~----~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~  209 (1230)
T 1u6g_C          134 ITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN----FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI  209 (1230)
T ss_dssp             HHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT----THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---
T ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH
Confidence            6888888887 3 5789999999999988542221100    01345566667788999999999999999998754332


Q ss_pred             chhhhhHHhHHHHHHHhcCC--CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 008827          156 LQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALAD  233 (552)
Q Consensus       156 ~~~~~~~~g~i~~Lv~ll~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~  233 (552)
                          + ....++.+++.+.+  +..++..++.+++.++...+..-. -+-...++.+++.+.+.  ++.+|+.++.++..
T Consensus       210 ----~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~l~~l~~~ll~~l~d~--~~~vR~~a~~~l~~  281 (1230)
T 1u6g_C          210 ----V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIG-EYLEKIIPLVVKFCNVD--DDELREYCIQAFES  281 (1230)
T ss_dssp             ------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGT-TSCTTHHHHHHHHHSSC--CTTTHHHHHHHHHH
T ss_pred             ----H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHH
Confidence                2 23478888888762  246788889999888753321000 01134578888877764  47789999999888


Q ss_pred             hhcCCh-hHHHHHHhcccHHHHHHhcC-------------------------------------CCCHHHHHHHHHHHHH
Q 008827          234 MCSKLE-CCRSRCLSLQVLKLVVDALA-------------------------------------HDSSDVRSAACMCLRS  275 (552)
Q Consensus       234 l~~~~~-~~~~~~~~~~~l~~lv~~L~-------------------------------------~~~~~v~~~a~~~L~~  275 (552)
                      ++...+ ..+..+  ..++|.++..+.                                     +..+.+|..|+.++..
T Consensus       282 l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~  359 (1230)
T 1u6g_C          282 FVRRCPKEVYPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDA  359 (1230)
T ss_dssp             HHHCTTCCCHHHH--HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHH
T ss_pred             HHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHH
Confidence            876322 111111  123444444432                                     1235789999999999


Q ss_pred             hhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch----------------hHHHH--HhhCcHH
Q 008827          276 VSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT----------------RRSTF--IRLGGVK  337 (552)
Q Consensus       276 ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~----------------~~~~~--~~~g~i~  337 (552)
                      ++...+..-..  .-..++|.++..+.+.++++|..+..++..++.....                ....+  .-...++
T Consensus       360 l~~~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~  437 (1230)
T 1u6g_C          360 VVSTRHEMLPE--FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVK  437 (1230)
T ss_dssp             HHTTCCTTHHH--HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHH
T ss_pred             HHHhchhHHHH--HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHH
Confidence            98753321111  3356788888888888999999999998877642110                01111  1124566


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCCh--hHHHHHHHHHHHhhcC-CcchHHH
Q 008827          338 LLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP--SVQEQALALVRNLVDG-RINSVEY  414 (552)
Q Consensus       338 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~--~v~~~a~~~L~~l~~~-~~~~~~~  414 (552)
                      .+.+.+++++..+|..++.+++.++......... . -...++.+...+.++.+  .++..++..+..+... .++....
T Consensus       438 ~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~-~-l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~  515 (1230)
T 1u6g_C          438 ALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQ-H-IPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHP  515 (1230)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGG-G-HHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHH
T ss_pred             HHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHH-H-HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHh
Confidence            7777799999999999999999887643211111 1 12356788888887764  8999999999998753 2332333


Q ss_pred             HHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcC--CC-----hhhHHHHHHHhhHhhhhhhHHHHHHhh--cCCCh
Q 008827          415 IFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT--GK-----ESHKEAVMDQLLLRAENKAQSCIIKFL--QSNDS  485 (552)
Q Consensus       415 i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~--~~-----~~~~~~i~~~~~~~~~~~~v~~Lv~lL--~~~~~  485 (552)
                      .+..   +++.+...+.+ +++.++..+++++..++.  +.     +......+        ..+++.++..+  .+.++
T Consensus       516 ~l~~---llp~L~~~l~d-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~--------~~ll~~ll~~l~~~d~~~  583 (1230)
T 1u6g_C          516 HVQA---LVPPVVACVGD-PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI--------KDLFTCTIKRLKAADIDQ  583 (1230)
T ss_dssp             HHTT---THHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH--------HHHHHHHHHHHSCSSSCH
T ss_pred             HHHH---HHHHHHHHHcc-cchHHHHHHHHHHHHHHHHhcCcccccccchHHHH--------HHHHHHHHHHHhccCCCH
Confidence            3332   68888888877 778888888888887773  21     01122233        35667888888  66788


Q ss_pred             hHHHHHHHHHHhhcCCCCCC-C---HHHHHHHH-------------------------------HCCcHHHHHhhhcCCC
Q 008827          486 RLRTAAVWAVLNLTCSSSPG-S---SGRLVKLH-------------------------------DAGIVSHVKNMVNDPC  530 (552)
Q Consensus       486 ~~~~~a~~~l~~l~~~~~~~-~---~~~~~~l~-------------------------------~~g~~~~L~~ll~~~~  530 (552)
                      .+|..|+.+++.++....+. .   ......+.                               -..+++.|.+.+++++
T Consensus       584 ~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~  663 (1230)
T 1u6g_C          584 EVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQ  663 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCC
Confidence            99999999999987421100 0   11111110                               0123455666666777


Q ss_pred             ccHHHHHHHHHHHHhhhc
Q 008827          531 LDVKLRVKTALEQFNSFD  548 (552)
Q Consensus       531 ~~v~~~a~~al~~~~~~~  548 (552)
                      ..+|+.+..++..+....
T Consensus       664 ~~~r~~a~~al~~l~~~~  681 (1230)
T 1u6g_C          664 RALKLGTLSALDILIKNY  681 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            888999999998887653

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.72  E-value=2.7e-15  Score=159.73  Aligned_cols=440  Identities=14%  Similarity=0.133  Sum_probs=300.1

Q ss_pred             chHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhc
Q 008827           37 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV  115 (552)
Q Consensus        37 ~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~  115 (552)
                      ++..+..-|+++++.++..|..+++++.. ++    +. ...++.+..+|.+ ++.||.+|+.|++.+...+++...   
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~---  178 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS-SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME---  178 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG---
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH---
Confidence            45677788888999999999999999973 22    11 2456788888886 789999999999999877666532   


Q ss_pred             cccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC----------------CCch
Q 008827          116 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD----------------PGRV  179 (552)
Q Consensus       116 ~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~----------------~~~v  179 (552)
                           +.++.+..++.|.++.|+..|+.+|..++..+++. .  ..-...+|.++++|.+                ++..
T Consensus       179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~--~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~  250 (618)
T 1w63_A          179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM-L--AHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL  250 (618)
T ss_dssp             -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-H--HHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred             -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-H--HHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence                 34556677889999999999999999988643210 0  1123567777776642                3455


Q ss_pred             hchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcC----CCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHH
Q 008827          180 GDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKG----SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVV  255 (552)
Q Consensus       180 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~----~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv  255 (552)
                      +.....+|..+...++....     ..++.|..++...    +....+...+++++..+.. ++..+.     ..++.+.
T Consensus       251 q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~-----~a~~~L~  319 (618)
T 1w63_A          251 QVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRV-----LAINILG  319 (618)
T ss_dssp             HHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHH-----HHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHH-----HHHHHHH
Confidence            77788899998887765422     2334444444321    1124577788888888753 333222     4577888


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCc
Q 008827          256 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG  335 (552)
Q Consensus       256 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~  335 (552)
                      .++.++++.+|+.++.+|..+....+.     .+ ....+.++..+.+++..++..|...|..++.... ..      .+
T Consensus       320 ~~L~~~d~~vr~~aL~~L~~i~~~~p~-----~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n-v~------~i  386 (618)
T 1w63_A          320 RFLLNNDKNIRYVALTSLLKTVQTDHN-----AV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN-IR------GM  386 (618)
T ss_dssp             HHHTCSSTTTHHHHHHHHHHHHHHHHH-----HH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS-TH------HH
T ss_pred             HHHhCCCCchHHHHHHHHHHHHhhCHH-----HH-HHHHHHHHHHccCCChhHHHHHHHHHHHHccccc-HH------HH
Confidence            899999999999999999999875332     12 2456788999999999999999999999986432 21      24


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 008827          336 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI  415 (552)
Q Consensus       336 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  415 (552)
                      ++.|.+++.+.+.++|..++.+++.++....+. .     .-.++.+++++++....+...+...+..+....|+...+ 
T Consensus       387 v~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~-~-----~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~-  459 (618)
T 1w63_A          387 MKELLYFLDSCEPEFKADCASGIFLAAEKYAPS-K-----RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAY-  459 (618)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC-H-----HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHH-
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc-H-----HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHH-
Confidence            578888888899999999999999998743322 1     123677888887766667777777777777666654443 


Q ss_pred             HhhcCchHHHHHHHhccc-CchhHHHHHHHHHHhhcCCChh----hHH--HHHHHhhHhhhhhhHHHHHHhhc--CCChh
Q 008827          416 FAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKES----HKE--AVMDQLLLRAENKAQSCIIKFLQ--SNDSR  486 (552)
Q Consensus       416 ~~~~~~~~~~l~~~L~~~-~~~~v~~~a~~~L~~la~~~~~----~~~--~i~~~~~~~~~~~~v~~Lv~lL~--~~~~~  486 (552)
                            +++.+...+.+. ........++|+||.++..-..    ..+  .+.       ...+++.|..+++  +.++.
T Consensus       460 ------~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~-------~~~~~~~l~~~l~~~~~~~~  526 (618)
T 1w63_A          460 ------TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVT-------EDEVLDILESVLISNMSTSV  526 (618)
T ss_dssp             ------HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCC-------HHHHHHHHHHHHHSTTCCHH
T ss_pred             ------HHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCC-------HHHHHHHHHHHHhccCCCHH
Confidence                  344555666542 2344555799999988631000    000  000       0233455666665  46889


Q ss_pred             HHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhh
Q 008827          487 LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  546 (552)
Q Consensus       487 ~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~  546 (552)
                      +|..+.+++..+.... +...+..        ...|....++.++|||+||...+.-+..
T Consensus       527 vr~~~lta~~Kl~~~~-~~~~~~l--------~~~L~~~~~~~d~evrdRA~~y~~ll~~  577 (618)
T 1w63_A          527 TRGYALTAIMKLSTRF-TCTVNRI--------KKVVSIYGSSIDVELQQRAVEYNALFKK  577 (618)
T ss_dssp             HHHHHHHHHHHHHTTC-SSCHHHH--------HHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhC-cchHHHH--------HHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence            9999999999998621 1212221        2223444567889999999998877654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.70  E-value=3.9e-15  Score=153.39  Aligned_cols=385  Identities=14%  Similarity=0.126  Sum_probs=253.8

Q ss_pred             HhhcCCHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhc--CChhhHHHHHHHHHHHhhhCCC-------
Q 008827           84 SLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKD--RFARTRLLASLCLIVIRNASPC-------  154 (552)
Q Consensus        84 ~lL~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~--~~~~vr~~A~~~L~~l~~~~~~-------  154 (552)
                      .++..+..+|..|-..|..+...+  .         .+.+..++..+.+  .++.+|..|+..|.++......       
T Consensus         9 ~~~s~d~~~r~~Ae~~L~~~~~~~--~---------~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~   77 (462)
T 1ibr_B            9 KTVSPDRLELEAAQKFLERAAVEN--L---------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ   77 (462)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHHHH--H---------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhhC--h---------HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHH
Confidence            334446678888888887754321  0         2233445555554  3688999999999988643210       


Q ss_pred             ---cchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHH
Q 008827          155 ---YLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLA  230 (552)
Q Consensus       155 ---~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~a  230 (552)
                         ...+.-....+-..|++.+. +++.+ ..++.+++.++.......   .-.+.++.|++.+.++..++.+++.++.+
T Consensus        78 ~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~  153 (462)
T 1ibr_B           78 QRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEA  153 (462)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence               00111223445566777777 45678 889999999875421100   01356788888887751147899999999


Q ss_pred             HHHhhcCC-hhHHHHHHhcccHHHHHHhcCCC--CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHH
Q 008827          231 LADMCSKL-ECCRSRCLSLQVLKLVVDALAHD--SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA  307 (552)
Q Consensus       231 L~~l~~~~-~~~~~~~~~~~~l~~lv~~L~~~--~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~  307 (552)
                      |+.++.+. +..-.. .-..+++.+..+++++  ++.+|..|++++.++...............-+++.+...+.+++++
T Consensus       154 l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  232 (462)
T 1ibr_B          154 IGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR  232 (462)
T ss_dssp             HHHHHHHSCGGGTGG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHhCCchhhHh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHH
Confidence            99998632 111011 1124788899999988  7999999999999875321110000011112466777778889999


Q ss_pred             HHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHh-----------------H
Q 008827          308 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC-----------------K  370 (552)
Q Consensus       308 v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-----------------~  370 (552)
                      ++..++.+|..++...+......+..+.++.++..+++.++.+|..++.++..++... ...                 .
T Consensus       233 vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  311 (462)
T 1ibr_B          233 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE-MDLAIEASEAAEQGRPPEHTS  311 (462)
T ss_dssp             HHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH-HHHHHHHCCTTCSSSCSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH-HHHHHhcccccccCCCccchh
Confidence            9999999999998755432112222267788888888999999999999998887531 000                 0


Q ss_pred             HHHHH---hhcHHHHHhhhcC-------CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHH
Q 008827          371 EEIFM---ELTASLLASLICD-------PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEI  440 (552)
Q Consensus       371 ~~i~~---~~~~~~l~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~  440 (552)
                      ..+.+   ...++.+++.+.+       +++.++..+..+|..++...++   .++..   +++.+...+.+ +++.++.
T Consensus       312 ~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~---~~~~l~~~l~~-~~~~~r~  384 (462)
T 1ibr_B          312 KFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPH---VLPFIKEHIKN-PDWRYRD  384 (462)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHH---HHHHHHHHTTC-SSHHHHH
T ss_pred             HHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHHHH---HHHHHHHHhcC-CChHHHH
Confidence            00111   2345667666643       3457899999999998765432   22221   56777777777 8999999


Q ss_pred             HHHHHHHhhcCCCh-hhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          441 QGMYVLGNVATGKE-SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       441 ~a~~~L~~la~~~~-~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      .++++++.++.+.. ......+        ..++|.++..|.++++.+|..|+|+|++++.
T Consensus       385 aal~~l~~l~~~~~~~~~~~~l--------~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          385 AAVMAFGCILEGPEPSQLKPLV--------IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (462)
T ss_dssp             HHHHHHHHTSSSSCTTTTCTTT--------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99999999998654 2111122        4678999999999999999999999999984

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.68  E-value=1.1e-14  Score=139.69  Aligned_cols=257  Identities=16%  Similarity=0.123  Sum_probs=197.1

Q ss_pred             CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHH
Q 008827          120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQ  198 (552)
Q Consensus       120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~  198 (552)
                      ...++.++..++++++.+|..|+.+|.++..            .+.++.|++++++ ++.++..|+++|+++........
T Consensus        22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~   89 (280)
T 1oyz_A           22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED   89 (280)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred             HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence            4578899999999999999999999998752            3588999999985 46789999999998864332211


Q ss_pred             HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 008827          199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR  278 (552)
Q Consensus       199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~  278 (552)
                            ..++.|.+.+.+. .++.+|..++++|+.++..++..     ....++.++..++++++.+|..++.+|+.+..
T Consensus        90 ------~l~~~L~~~~~~d-~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           90 ------NVFNILNNMALND-KSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             ------HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             ------HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence                  1223333222222 35889999999999997533221     12468999999999999999999999976543


Q ss_pred             ccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827          279 SIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL  358 (552)
Q Consensus       279 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL  358 (552)
                                  .+.++.|+.++.++++.++..|+++|+++....         ..+++.|..+++++++.+|..++++|
T Consensus       158 ------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~d~~~~vR~~A~~aL  216 (280)
T 1oyz_A          158 ------------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGL  216 (280)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence                        357899999999999999999999999885322         24678899999999999999999999


Q ss_pred             HHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhH
Q 008827          359 RNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI  438 (552)
Q Consensus       359 ~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v  438 (552)
                      +++..            ...++.+..++.+++  ++..++.+|+.+..  +.           +++.|..++.+++++++
T Consensus       217 ~~~~~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~--~~-----------~~~~L~~~l~~~~~~~~  269 (280)
T 1oyz_A          217 SYRKD------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD--KT-----------LLPVLDTMLYKFDDNEI  269 (280)
T ss_dssp             HHTTC------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC--GG-----------GHHHHHHHHTTSSCCHH
T ss_pred             HHhCC------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc--hh-----------hhHHHHHHHhcCCCcHH
Confidence            99852            236788888888755  88899999998853  21           68888888877677777


Q ss_pred             HHHHHHHHHh
Q 008827          439 EIQGMYVLGN  448 (552)
Q Consensus       439 ~~~a~~~L~~  448 (552)
                      ...+...|.+
T Consensus       270 ~~~~~~~l~~  279 (280)
T 1oyz_A          270 ITSAIDKLKR  279 (280)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhhc
Confidence            7777766653

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.67  E-value=1.3e-14  Score=139.01  Aligned_cols=258  Identities=15%  Similarity=0.106  Sum_probs=198.9

Q ss_pred             HHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccc
Q 008827          202 FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK  281 (552)
Q Consensus       202 ~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~  281 (552)
                      ...+.++.|++.|.++  ++.+|..|+++|+.+..  +         +.++.++.+++++++.+|..++++|..+.....
T Consensus        20 ~~~~~i~~L~~~L~~~--~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~   86 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDH--NSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK   86 (280)
T ss_dssp             HHTSCHHHHHHHTTCS--SHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred             HHHhhHHHHHHHHHcC--CHHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence            3467899999999875  48899999999999862  2         358899999999999999999999988864311


Q ss_pred             cccchhhhccCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008827          282 NLSAGSFMNETIVIPLVR-LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN  360 (552)
Q Consensus       282 ~~~~~~~~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~  360 (552)
                      .       ...+++.|.. +++++++.++..|+++|+++....+...     ...++.|..++.++++.+|..++++|++
T Consensus        87 ~-------~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~  154 (280)
T 1oyz_A           87 C-------EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISV  154 (280)
T ss_dssp             T-------HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred             c-------chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence            1       0123344442 4578999999999999999874332211     2467899999999999999999999998


Q ss_pred             hcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHH
Q 008827          361 LIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEI  440 (552)
Q Consensus       361 l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~  440 (552)
                      +..            ...++.|..++.++++.++..++++|+.+....+.           +++.+...+.+ +++.++.
T Consensus       155 ~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~-----------~~~~L~~~l~d-~~~~vR~  210 (280)
T 1oyz_A          155 IND------------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD-----------IRDCFVEMLQD-KNEEVRI  210 (280)
T ss_dssp             C---------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH-----------HHHHHHHHTTC-SCHHHHH
T ss_pred             cCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHH-----------HHHHHHHHhcC-CCHHHHH
Confidence            843            13688999999999999999999999998543332           57778888877 8899999


Q ss_pred             HHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHH
Q 008827          441 QGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVS  520 (552)
Q Consensus       441 ~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~  520 (552)
                      .++++|+++..                  ...++.|...+++++  +|..|+++|+++..               ..+++
T Consensus       211 ~A~~aL~~~~~------------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---------------~~~~~  255 (280)
T 1oyz_A          211 EAIIGLSYRKD------------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD---------------KTLLP  255 (280)
T ss_dssp             HHHHHHHHTTC------------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---------------GGGHH
T ss_pred             HHHHHHHHhCC------------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---------------hhhhH
Confidence            99999998852                  244577888888755  89999999999873               14688


Q ss_pred             HHHhhhcC-CCccHHHHHHHHHHH
Q 008827          521 HVKNMVND-PCLDVKLRVKTALEQ  543 (552)
Q Consensus       521 ~L~~ll~~-~~~~v~~~a~~al~~  543 (552)
                      .|.+++++ +++++...+..+|.+
T Consensus       256 ~L~~~l~~~~~~~~~~~~~~~l~~  279 (280)
T 1oyz_A          256 VLDTMLYKFDDNEIITSAIDKLKR  279 (280)
T ss_dssp             HHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred             HHHHHHhcCCCcHHHHHHHHHhhc
Confidence            89998864 456777776666654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.64  E-value=5.9e-14  Score=144.57  Aligned_cols=388  Identities=13%  Similarity=0.089  Sum_probs=260.4

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC---CCchhchHHHHHHHhhcCCHHHH--
Q 008827          124 SCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD---PGRVGDEASFAFSSLIAEKEDMQ--  198 (552)
Q Consensus       124 ~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~---~~~v~~~a~~~L~~l~~~~~~~~--  198 (552)
                      ..++..+.+++..+|..|-..|..+....         ..+....|..++.+   +..+|..|+..|.++........  
T Consensus         4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~   74 (462)
T 1ibr_B            4 ITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA   74 (462)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHH
Confidence            44566667889999999999988765410         24567777777763   34689999999998875431100  


Q ss_pred             ---HH--HH---H-hCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCC--CHHHHH
Q 008827          199 ---KL--AF---E-VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD--SSDVRS  267 (552)
Q Consensus       199 ---~~--~~---~-~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~--~~~v~~  267 (552)
                         ..  .+   . ...-..|+..|.+++  +.+ ..+..+++.++...-.. .  .-.+++|.+++.+.++  ++.+|.
T Consensus        75 ~~~~~~~~l~~~~~~~ik~~ll~~l~~~~--~~v-~~~~~~i~~ia~~~~~~-~--~w~~ll~~L~~~l~~~~~~~~~r~  148 (462)
T 1ibr_B           75 QYQQRWLAIDANARREVKNYVLQTLGTET--YRP-SSASQCVAGIACAEIPV-N--QWPELIPQLVANVTNPNSTEHMKE  148 (462)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHTTCCC--SSS-CSHHHHHHHHHHHHGGG-T--CCTTHHHHHHHHHHCTTCCHHHHH
T ss_pred             HHHhhhhcCCHHHHHHHHHHHHHHhCCCC--chh-hHHHHHHHHHHHHhccc-c--ccHHHHHHHHHHhccCCCCHHHHH
Confidence               00  00   0 111245677676653  456 77778888887532110 0  1135899999999988  899999


Q ss_pred             HHHHHHHHhhccc-ccccchhhhccCcHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCchhHH-HHHhhCcHHHHHHhh
Q 008827          268 AACMCLRSVSRSI-KNLSAGSFMNETIVIPLVRLLDDT--STAVQVAALGAISNIVVDFTTRRS-TFIRLGGVKLLVQLS  343 (552)
Q Consensus       268 ~a~~~L~~ls~~~-~~~~~~~~~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~-~~~~~g~i~~L~~ll  343 (552)
                      .++.++..++... +..-..  ....+++.++..++++  ++++|..|+.+++++......... .....-.++.+.+.+
T Consensus       149 ~al~~l~~l~~~~~~~~~~~--~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~  226 (462)
T 1ibr_B          149 STLEAIGYICQDIDPEQLQD--KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT  226 (462)
T ss_dssp             HHHHHHHHHHHHSCGGGTGG--GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCchhhHh--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence            9999999998653 111111  2245788889999887  799999999999997643322110 111112466777788


Q ss_pred             cCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCc--------------
Q 008827          344 KSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRI--------------  409 (552)
Q Consensus       344 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~--------------  409 (552)
                      .++++.+|..+++++..++.......+. .+....++.++..+.+.+++++..++.++..++....              
T Consensus       227 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  305 (462)
T 1ibr_B          227 QCPDTRVRVAALQNLVKIMSLYYQYMET-YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR  305 (462)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHCGGGCTT-TTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence            8889999999999999987543211111 1111456677777889999999999999988875310              


Q ss_pred             -------chHHHHHhhcCchHHHHHHHhcc------cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHH
Q 008827          410 -------NSVEYIFAEDGIILDAVGRQLRI------ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCI  476 (552)
Q Consensus       410 -------~~~~~i~~~~~~~~~~l~~~L~~------~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~L  476 (552)
                             ...+..+.   .+++.+.+.|..      +.++.++..++.+|..++....+   .++        ..+++.+
T Consensus       306 ~~~~~~~~~~~~~~~---~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~--------~~~~~~l  371 (462)
T 1ibr_B          306 PPEHTSKFYAKGALQ---YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV--------PHVLPFI  371 (462)
T ss_dssp             CSSCCCCCHHHHHHH---HHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH--------HHHHHHH
T ss_pred             CccchhHHHHHHHhh---hccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH--------HHHHHHH
Confidence                   01111111   156666666643      13457899999999998864332   233        3566888


Q ss_pred             HHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          477 IKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       477 v~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      ...+++++..+|..|+.+++.++....   .+..... -..+++.+.+.++|+++.||..|.++|+++.+.
T Consensus       372 ~~~l~~~~~~~r~aal~~l~~l~~~~~---~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          372 KEHIKNPDWRYRDAAVMAFGCILEGPE---PSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHTSSSSC---TTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCChHHHHHHHHHHHHHhcCCc---HHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999995211   1111111 146789999999999999999999999999875

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.58  E-value=4.2e-12  Score=134.67  Aligned_cols=402  Identities=15%  Similarity=0.140  Sum_probs=270.1

Q ss_pred             cchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhh
Q 008827           36 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF  114 (552)
Q Consensus        36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~  114 (552)
                      .+....+.++.+++...+..+.-.+..+++.+.....+    ++..+.+-|++ ++-+|..|+.+|+++..  ++..+  
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L----~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~--  145 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL----INNAIKNDLASRNPTFMGLALHCIANVGS--REMAE--  145 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH--
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH----HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH--
Confidence            34577788888888888888888888888664432211    23444444555 67889999999999853  44432  


Q ss_pred             ccccCCccHHHHHHHH--hcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhh
Q 008827          115 VGPDTGRTLSCIIEIV--KDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLI  191 (552)
Q Consensus       115 ~~~~~~~~l~~l~~ll--~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~  191 (552)
                            ..++.+.+.+  .|.++.||..|+.++..++...++.    +...++++.+.++|++ ++.|+..|..++..++
T Consensus       146 ------~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~----~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~  215 (621)
T 2vgl_A          146 ------AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL----VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLA  215 (621)
T ss_dssp             ------HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG----CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh----cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence                  3456788888  8999999999999999999976532    1124789999999985 4578888889999988


Q ss_pred             cCCHHHHHHHHHhCcHHHHHHhh----hcCCC-----------ChhhHHHHHHHHHHhhcC-ChhHHHHHHhcccHHHHH
Q 008827          192 AEKEDMQKLAFEVNGVDKLYNHL----QKGSL-----------HPRRFEGILLALADMCSK-LECCRSRCLSLQVLKLVV  255 (552)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~L~~~L----~~~~~-----------~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~~l~~lv  255 (552)
                      ..++...     ...+|.+++.|    ..+..           +|-.+...+..|..++.. +++.+..+.+  .++.++
T Consensus       216 ~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il  288 (621)
T 2vgl_A          216 QKNPEEF-----KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETIL  288 (621)
T ss_dssp             HHCHHHH-----TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHH
T ss_pred             HhChHHH-----HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHH
Confidence            7766421     12344444433    22211           355778888888888863 3454444332  344444


Q ss_pred             HhcC---------CCCH--HHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 008827          256 DALA---------HDSS--DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT  324 (552)
Q Consensus       256 ~~L~---------~~~~--~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~  324 (552)
                      ..+.         +.+.  .|...++.++..+... +.      ....++..|..+|.++++++|..|..+|..++...+
T Consensus       289 ~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-~~------~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~  361 (621)
T 2vgl_A          289 NKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE-PN------LLVRACNQLGQFLQHRETNLRYLALESMCTLASSEF  361 (621)
T ss_dssp             HHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-HH------HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT
T ss_pred             HhhccCcccccccccchHHHHHHHHHHHHHhcCCc-HH------HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccC
Confidence            3321         2233  8888899998888532 11      123567889999999999999999999999987553


Q ss_pred             hhHHHHHhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHH
Q 008827          325 TRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRN  403 (552)
Q Consensus       325 ~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~  403 (552)
                      . . .++ ....+.++..+. +++..+|..++..|..++..   .+-..     .+..+.+.+.+.|.+++..++..++.
T Consensus       362 ~-~-~~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~---~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~  430 (621)
T 2vgl_A          362 S-H-EAV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR---SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAI  430 (621)
T ss_dssp             T-H-HHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH---HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             c-H-HHH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh---hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            2 1 122 345677788888 89999999999999999752   23333     34566677777899999999999998


Q ss_pred             hhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC
Q 008827          404 LVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN  483 (552)
Q Consensus       404 l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~  483 (552)
                      ++..-+....+       +++.+.+++.. ....+...++..+..+....++.+...+            ..+...+.++
T Consensus       431 la~k~~~~~~~-------~v~~Ll~ll~~-~~~~v~~ev~~~l~~ii~~~~~~~~~~~------------~~l~~~l~~~  490 (621)
T 2vgl_A          431 LAEKYAVDYTW-------YVDTILNLIRI-AGDYVSEEVWYRVIQIVINRDDVQGYAA------------KTVFEALQAP  490 (621)
T ss_dssp             HHHHHCSSTHH-------HHHHHHHHHHH-HGGGSCSHHHHHHHHHHGGGCSCHHHHH------------HHHHHHHTSS
T ss_pred             HHHhcCCcHHH-------HHHHHHHHHHh-hcccchHHHHHHHHHHHhCChhHHHHHH------------HHHHHHHcCc
Confidence            87542222222       46667777765 2333444555555555544444443333            4667777765


Q ss_pred             C--hhHHHHHHHHHHhhcC
Q 008827          484 D--SRLRTAAVWAVLNLTC  500 (552)
Q Consensus       484 ~--~~~~~~a~~~l~~l~~  500 (552)
                      .  ..+...++|.++.++.
T Consensus       491 ~~~~~li~~~~wilGEy~~  509 (621)
T 2vgl_A          491 ACHENLVKVGGYILGEFGN  509 (621)
T ss_dssp             SCCHHHHHHHHHHHHHHTH
T ss_pred             cchHHHHHHHHHHhcchHH
Confidence            4  3466678899999864

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.53  E-value=4.4e-13  Score=122.52  Aligned_cols=189  Identities=21%  Similarity=0.196  Sum_probs=157.4

Q ss_pred             ccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHh
Q 008827          290 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC  369 (552)
Q Consensus       290 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~  369 (552)
                      +.+.++.|+.+|+++++.+|..|+.+|+.+..           .+.++.|++++.++++.+|..++++|+.+..      
T Consensus        17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            45788999999999999999999999987643           3678999999999999999999999999843      


Q ss_pred             HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhh
Q 008827          370 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNV  449 (552)
Q Consensus       370 ~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~l  449 (552)
                            ...++.+.+++.++++.++..++++|+++...  +           .++.|...|.+ +++.++..++++|+++
T Consensus        80 ------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~--~-----------~~~~L~~~l~d-~~~~vr~~a~~aL~~~  139 (211)
T 3ltm_A           80 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE--R-----------AVEPLIKALKD-EDWFVRIAAAFALGEI  139 (211)
T ss_dssp             ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--G-----------GHHHHHHHTTC-SSHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH--H-----------HHHHHHHHHhC-CCHHHHHHHHHHHHHc
Confidence                  13678899999999999999999999998532  1           57888888877 8999999999999998


Q ss_pred             cCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC
Q 008827          450 ATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP  529 (552)
Q Consensus       450 a~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~  529 (552)
                      ..                  ...++.|..+++++++.+|..|+.+|.++..               ..+++.|.++++|+
T Consensus       140 ~~------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------------~~~~~~L~~~l~d~  186 (211)
T 3ltm_A          140 GD------------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------------ERVRAAMEKLAETG  186 (211)
T ss_dssp             CC------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------------HHHHHHHHHHHHHC
T ss_pred             CC------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHhCC
Confidence            42                  2345788889999999999999999999973               12477888899889


Q ss_pred             CccHHHHHHHHHHHHhhhc
Q 008827          530 CLDVKLRVKTALEQFNSFD  548 (552)
Q Consensus       530 ~~~v~~~a~~al~~~~~~~  548 (552)
                      ++.||..|..+|.++....
T Consensus       187 ~~~vr~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          187 TGFARKVAVNYLETHKSFN  205 (211)
T ss_dssp             CHHHHHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHhcCCCC
Confidence            9999999999999876543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.53  E-value=4.2e-13  Score=121.58  Aligned_cols=189  Identities=20%  Similarity=0.181  Sum_probs=158.8

Q ss_pred             hccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChH
Q 008827          289 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK  368 (552)
Q Consensus       289 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~  368 (552)
                      ...+..+.++++|+++++.+|..|+.+|+.+..           .+.++.|++++.++++.+|..++++|+.+..   + 
T Consensus        11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---~-   75 (201)
T 3ltj_A           11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---E-   75 (201)
T ss_dssp             CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---G-
T ss_pred             cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---H-
Confidence            456778999999999999999999999987653           2578999999999999999999999999843   1 


Q ss_pred             hHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHh
Q 008827          369 CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGN  448 (552)
Q Consensus       369 ~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~  448 (552)
                              ..++.+..++.++++.++..++++|+++...  +           .++.+...|.+ +++.++..++++|++
T Consensus        76 --------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--~-----------~~~~L~~~l~d-~~~~vr~~a~~aL~~  133 (201)
T 3ltj_A           76 --------RAVEPLIKALKDEDGWVRQSAAVALGQIGDE--R-----------AVEPLIKALKD-EDWFVRIAAAFALGE  133 (201)
T ss_dssp             --------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--G-----------GHHHHHHHTTC-SSHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH--H-----------HHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence                    3678899999999999999999999998532  1           57788888877 899999999999998


Q ss_pred             hcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcC
Q 008827          449 VATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVND  528 (552)
Q Consensus       449 la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~  528 (552)
                      +..                  ...++.|..++.++++.+|..|+++|.++..      .         .+++.|.++++|
T Consensus       134 ~~~------------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------~---------~~~~~L~~~l~d  180 (201)
T 3ltj_A          134 IGD------------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG------E---------RVRAAMEKLAET  180 (201)
T ss_dssp             HTC------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------H---------HHHHHHHHHHHH
T ss_pred             hCC------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------h---------hHHHHHHHHHhC
Confidence            853                  2345788899999999999999999999962      1         247788888888


Q ss_pred             CCccHHHHHHHHHHHHhhh
Q 008827          529 PCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       529 ~~~~v~~~a~~al~~~~~~  547 (552)
                      +++.||..|..+|.++...
T Consensus       181 ~~~~vr~~A~~aL~~l~~~  199 (201)
T 3ltj_A          181 GTGFARKVAVNYLETHKSL  199 (201)
T ss_dssp             CCHHHHHHHHHHHHHCC--
T ss_pred             CCHHHHHHHHHHHHHHHhh
Confidence            8999999999999987643

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.53  E-value=2e-11  Score=129.43  Aligned_cols=447  Identities=11%  Similarity=0.076  Sum_probs=287.2

Q ss_pred             chHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhh--cC-CHHHHHHHHHHHHHHhcCChhhhhh
Q 008827           37 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLL--GG-SLIQRDASLESIATIFKNNPEVVSQ  113 (552)
Q Consensus        37 ~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL--~~-~~~v~~~al~~L~~l~~~~~~~~~~  113 (552)
                      ++..+..-|+++++.++..|..+++++.. ++.    . ...++.+.++|  .+ ++-||..|+.|+..+...+++... 
T Consensus       112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e~----~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~-  184 (621)
T 2vgl_A          112 INNAIKNDLASRNPTFMGLALHCIANVGS-REM----A-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP-  184 (621)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HHH----H-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC-
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHhhccCC-HHH----H-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC-
Confidence            34566677778888899999999999863 331    2 23567888888  55 789999999999999876665531 


Q ss_pred             hccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC--------------CCch
Q 008827          114 FVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--------------PGRV  179 (552)
Q Consensus       114 ~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~--------------~~~v  179 (552)
                           ..+.++.+..++.|.++.|+..|+.++..++...+....  ......+..|-+++..              ++..
T Consensus       185 -----~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~--~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~  257 (621)
T 2vgl_A          185 -----MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK--TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL  257 (621)
T ss_dssp             -----CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT--THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHH
T ss_pred             -----chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH--HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchH
Confidence                 136788889999999999999999999999876432111  0112233333344321              2345


Q ss_pred             hchHHHHHHHhhcC-CHHHHHHHHHhCcHHHHHHhhhcCCC---------ChhhHHHHHHHHHHhhcCChhHHHHHHhcc
Q 008827          180 GDEASFAFSSLIAE-KEDMQKLAFEVNGVDKLYNHLQKGSL---------HPRRFEGILLALADMCSKLECCRSRCLSLQ  249 (552)
Q Consensus       180 ~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~L~~~~~---------~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~  249 (552)
                      +......+..+... ++.....+.+  .++.+++.+.+...         ...+...++.++..+.. +++.+.     .
T Consensus       258 qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~  329 (621)
T 2vgl_A          258 SVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----R  329 (621)
T ss_dssp             HHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----H
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----H
Confidence            67777777777753 4554433333  34444433322110         12566677788888753 333332     3


Q ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHH
Q 008827          250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRS  328 (552)
Q Consensus       250 ~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~  328 (552)
                      .++.+..++.++++.+|+.++..|..+....+..  . ++ ....+.++..|. ++|..++..|...|..++..  .+. 
T Consensus       330 ~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~--~-~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv-  402 (621)
T 2vgl_A          330 ACNQLGQFLQHRETNLRYLALESMCTLASSEFSH--E-AV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR--SNA-  402 (621)
T ss_dssp             HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH--H-HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHH-
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH--H-HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhH-
Confidence            5677889999999999999999999997653211  1 22 356677888888 99999999999999999843  222 


Q ss_pred             HHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC
Q 008827          329 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  408 (552)
Q Consensus       329 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  408 (552)
                          ..++..|.+++...+.+++..++.+++.++..-.+..      .-.++.+++++......+...+...+..+....
T Consensus       403 ----~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~------~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~  472 (621)
T 2vgl_A          403 ----QQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY------TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINR  472 (621)
T ss_dssp             ----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGG
T ss_pred             ----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCC
Confidence                2456778888888899999999999998875322111      124667777776555556666666777776665


Q ss_pred             cchHHHHHhhcCchHHHHHHHhccc-CchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhH
Q 008827          409 INSVEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL  487 (552)
Q Consensus       409 ~~~~~~i~~~~~~~~~~l~~~L~~~-~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~  487 (552)
                      ++...+.       +..+...+... ....+...++|++|..+..-+.. ..+.    |   ...+..+..-+...++.+
T Consensus       473 ~~~~~~~-------~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~-~~~~----p---~~~l~~l~~~~~~~~~~v  537 (621)
T 2vgl_A          473 DDVQGYA-------AKTVFEALQAPACHENLVKVGGYILGEFGNLIAGD-PRSS----P---LIQFNLLHSKFHLCSVPT  537 (621)
T ss_dssp             CSCHHHH-------HHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSS-TTSC----H---HHHHHHHHHHHTTSCHHH
T ss_pred             hhHHHHH-------HHHHHHHHcCccchHHHHHHHHHHhcchHHHhccc-CCCC----H---HHHHHHHHHHhccCCHHH
Confidence            5544443       34455556552 23356677889999875311000 0000    0   123345555566778899


Q ss_pred             HHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhc--CCCccHHHHHHHHHHHHhh
Q 008827          488 RTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN--DPCLDVKLRVKTALEQFNS  546 (552)
Q Consensus       488 ~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~--~~~~~v~~~a~~al~~~~~  546 (552)
                      |..+..++..+...    .++....     +...|.....  |.++|+|+||.....-+..
T Consensus       538 ~~~~Lta~~Kl~~~----~p~~~~~-----i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~  589 (621)
T 2vgl_A          538 RALLLSTYIKFVNL----FPEVKAT-----IQDVLRSDSQLKNADVELQQRAVEYLRLSTV  589 (621)
T ss_dssp             HHHHHHHHHHHHHH----CGGGHHH-----HHHHHSSHHHHSCSSHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHH----ChHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcc
Confidence            99999999988741    1111111     1222222334  7899999999888776653

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.52  E-value=1.5e-12  Score=117.95  Aligned_cols=184  Identities=21%  Similarity=0.218  Sum_probs=156.8

Q ss_pred             ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 008827          249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS  328 (552)
Q Consensus       249 ~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~  328 (552)
                      +..+.++++|+++++.+|..|+.+|..+..            .+.++.|+.+|.++++.++..|+.+|+.+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            578999999999999999999999976543            2567899999999999999999999988742       


Q ss_pred             HHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC
Q 008827          329 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  408 (552)
Q Consensus       329 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  408 (552)
                          .+.++.|+.++.++++.+|..++++|+++..   +         ..++.+..++.++++.++..++++|+++... 
T Consensus        75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-  137 (201)
T 3ltj_A           75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD---E---------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE-  137 (201)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---G---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-
Confidence                2578899999999999999999999999843   1         3678889999999999999999999998532 


Q ss_pred             cchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHH
Q 008827          409 INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLR  488 (552)
Q Consensus       409 ~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~  488 (552)
                       .           .++.|..++.+ +++.++..++++|+.+..                  ..+++.|..+++++++.+|
T Consensus       138 -~-----------~~~~L~~~l~d-~~~~vr~~A~~aL~~~~~------------------~~~~~~L~~~l~d~~~~vr  186 (201)
T 3ltj_A          138 -R-----------AVEPLIKALKD-EDGWVRQSAADALGEIGG------------------ERVRAAMEKLAETGTGFAR  186 (201)
T ss_dssp             -G-----------GHHHHHHHTTC-SSHHHHHHHHHHHHHHCS------------------HHHHHHHHHHHHHCCHHHH
T ss_pred             -H-----------HHHHHHHHHcC-CCHHHHHHHHHHHHHhCc------------------hhHHHHHHHHHhCCCHHHH
Confidence             1           67888888887 889999999999999842                  2334678888899999999


Q ss_pred             HHHHHHHHhhc
Q 008827          489 TAAVWAVLNLT  499 (552)
Q Consensus       489 ~~a~~~l~~l~  499 (552)
                      ..|..+|.++.
T Consensus       187 ~~A~~aL~~l~  197 (201)
T 3ltj_A          187 KVAVNYLETHK  197 (201)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHHH
Confidence            99999999876

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.52  E-value=1.7e-12  Score=118.63  Aligned_cols=186  Identities=22%  Similarity=0.210  Sum_probs=156.6

Q ss_pred             cccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 008827          248 LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR  327 (552)
Q Consensus       248 ~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~  327 (552)
                      .+.++.++..|+++++.+|..++..|..+..            ...++.|+.+|.++++.++..|+++|+++..      
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            3579999999999999999999999976532            3568999999999999999999999998752      


Q ss_pred             HHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827          328 STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  407 (552)
Q Consensus       328 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  407 (552)
                           .+.++.|++++.++++.+|..++++|+.+..            ...++.|.+++.++++.++..++++|+++.. 
T Consensus        80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-  141 (211)
T 3ltm_A           80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-  141 (211)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-
Confidence                 3578899999999999999999999999843            1367889999999999999999999999843 


Q ss_pred             CcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhH
Q 008827          408 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL  487 (552)
Q Consensus       408 ~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~  487 (552)
                       ++           .++.|..++.+ +++.++..++.+|+.+..                  ..+++.|..+++++++.+
T Consensus       142 -~~-----------~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~------------------~~~~~~L~~~l~d~~~~v  190 (211)
T 3ltm_A          142 -ER-----------AVEPLIKALKD-EDGWVRQSAADALGEIGG------------------ERVRAAMEKLAETGTGFA  190 (211)
T ss_dssp             -GG-----------GHHHHHHHTTC-SSHHHHHHHHHHHHHHCS------------------HHHHHHHHHHHHHCCHHH
T ss_pred             -HH-----------HHHHHHHHHcC-CCHHHHHHHHHHHHHhCc------------------hhHHHHHHHHHhCCCHHH
Confidence             21           57888888877 889999999999999853                  233467888899999999


Q ss_pred             HHHHHHHHHhhcC
Q 008827          488 RTAAVWAVLNLTC  500 (552)
Q Consensus       488 ~~~a~~~l~~l~~  500 (552)
                      |..|..+|.++..
T Consensus       191 r~~A~~aL~~~~~  203 (211)
T 3ltm_A          191 RKVAVNYLETHKS  203 (211)
T ss_dssp             HHHHHHHHHC---
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999999985

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.28  E-value=5.3e-08  Score=104.61  Aligned_cols=218  Identities=13%  Similarity=0.153  Sum_probs=148.1

Q ss_pred             ccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHH-HhhcC-CHHHHHHHHHHHHHHhcC-Chhhh
Q 008827           35 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLT-SLLGG-SLIQRDASLESIATIFKN-NPEVV  111 (552)
Q Consensus        35 ~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~-~lL~~-~~~v~~~al~~L~~l~~~-~~~~~  111 (552)
                      ...+.+++..|+|+++..|..|+.+|.+++.++..+..+.+.|+|.+++ .+|.+ +..||..|..+|++|+.+ ..+.+
T Consensus        33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            3456678888999999999999999999999888898899999888765 45665 779999999999999865 45555


Q ss_pred             hhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchHHHHHHHhh
Q 008827          112 SQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLI  191 (552)
Q Consensus       112 ~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~  191 (552)
                      ..+.+   .+.++++..+++.....        +.   ................+..          +...+..+|.+|+
T Consensus       113 ~~l~~---~~il~~L~~~l~~~~~~--------~~---~~~~~~~~~~~~~~~~~~~----------~~~~~l~lL~~L~  168 (684)
T 4gmo_A          113 VHLYR---LDVLTAIEHAAKAVLET--------LT---TSEPPFSKLLKAQQRLVWD----------ITGSLLVLIGLLA  168 (684)
T ss_dssp             HHHHH---TTHHHHHHHHHHHHHHH--------HH---CBTTBGGGSCHHHHHHHHH----------HHHHHHHHHHHHH
T ss_pred             HHHHH---cChHHHHHHHHHhhHHH--------Hh---hhccccccccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence            44443   56788888877631111        11   1110000000001111111          1234556677777


Q ss_pred             cCCHHHHHHHHHhCcHHHHHHhhhcCC-CChhhHHHHHHHHHHhhcCChhHHHHHHhcccH---HHHHHhcCCCCHHHHH
Q 008827          192 AEKEDMQKLAFEVNGVDKLYNHLQKGS-LHPRRFEGILLALADMCSKLECCRSRCLSLQVL---KLVVDALAHDSSDVRS  267 (552)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~L~~~L~~~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l---~~lv~~L~~~~~~v~~  267 (552)
                      ..+......+...++++.|+..|.+.+ ....++..++.+|..++.+++.....+.+.+..   ..+..+.++ +...+.
T Consensus       169 e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~  247 (684)
T 4gmo_A          169 LARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAV  247 (684)
T ss_dssp             HHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHH
T ss_pred             hCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHH
Confidence            777776667778889999999885432 345789999999999999888888888776643   333333333 334567


Q ss_pred             HHHHHHHHhh
Q 008827          268 AACMCLRSVS  277 (552)
Q Consensus       268 ~a~~~L~~ls  277 (552)
                      .+++.|.|+.
T Consensus       248 la~giL~Ni~  257 (684)
T 4gmo_A          248 MACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhHh
Confidence            7888888874

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.03  E-value=1.3e-09  Score=117.22  Aligned_cols=195  Identities=15%  Similarity=0.137  Sum_probs=150.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHH-HhhcCCCHHHHHHHHHHHHHhcccCChHhHHH
Q 008827          294 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLV-QLSKSMDSTIRLNALRALRNLIFLAEDKCKEE  372 (552)
Q Consensus       294 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  372 (552)
                      +.|+++.|++++++.|..|+++|+|++. .+..++.+...|++..++ .++.+++..+|.+|+++|.||+...+++....
T Consensus        36 i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~  114 (684)
T 4gmo_A           36 ILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH  114 (684)
T ss_dssp             THHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence            4567788999999999999999999996 466677888888887765 57889999999999999999998777888899


Q ss_pred             HHHhhcHHHHHhhhcCCC---------------------hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhc
Q 008827          373 IFMELTASLLASLICDPE---------------------PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLR  431 (552)
Q Consensus       373 i~~~~~~~~l~~ll~~~~---------------------~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~  431 (552)
                      ++..++++.|..+++...                     .++..+++.+|++++.+..+..+.+...+  .++.++..|.
T Consensus       115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~--~l~~l~~~L~  192 (684)
T 4gmo_A          115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQ--TILRLLFRLI  192 (684)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCH--HHHHHHHHHH
T ss_pred             HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcc--cHHHHHHHHH
Confidence            999999999988874211                     24556788999999988877777777766  5677776664


Q ss_pred             cc--CchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhh---hHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          432 IA--SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENK---AQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       432 ~~--~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~---~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                      +.  ...+++..++.+|..++..+....+.+.+       .+   ....+..+.. .+...+..+++.+.|+.
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~-------~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITD-------DQETHVYDVLLKLAT-GTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHT-------CCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHh-------cchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHh
Confidence            32  23579999999999999988876666654       33   2233333333 34456778888988874

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.95  E-value=5.5e-07  Score=96.79  Aligned_cols=309  Identities=12%  Similarity=0.058  Sum_probs=203.1

Q ss_pred             HHHHHHHhcC----CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCC------ChhhHHHHHHHHHHh
Q 008827          165 LINNLLELLD----DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSL------HPRRFEGILLALADM  234 (552)
Q Consensus       165 ~i~~Lv~ll~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~------~~~~~~~a~~aL~~l  234 (552)
                      ++..|-+.|.    +++.++.-|+.+|+.+..+...        ..+..|...|.+.+.      .+.++..|...|+-.
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla  464 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA  464 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence            4566666664    1234566677777766544321        135566676765420      256788888888876


Q ss_pred             hcC--ChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh-cCCCHHHHHH
Q 008827          235 CSK--LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-DDTSTAVQVA  311 (552)
Q Consensus       235 ~~~--~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~  311 (552)
                      ...  +++         +++.|.+.+.+++..++..|+.+++.+-...        ....++..|++.+ .+.+..++..
T Consensus       465 ~~GS~~ee---------v~e~L~~~L~dd~~~~~~~AalALGli~vGT--------gn~~ai~~LL~~~~e~~~e~vrR~  527 (963)
T 4ady_A          465 AMGSANIE---------VYEALKEVLYNDSATSGEAAALGMGLCMLGT--------GKPEAIHDMFTYSQETQHGNITRG  527 (963)
T ss_dssp             STTCCCHH---------HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC--------CCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred             hcCCCCHH---------HHHHHHHHHhcCCHHHHHHHHHHHhhhhccc--------CCHHHHHHHHHHHhccCcHHHHHH
Confidence            432  232         4777888888888777878887877653221        1224566777765 4668899999


Q ss_pred             HHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhh-cCC
Q 008827          312 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI-CDP  389 (552)
Q Consensus       312 a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll-~~~  389 (552)
                      ++.+|+.+..+.+         ..++.+++.+. +.++.+|..++.+++.-..+...        ...++.|++.+ .+.
T Consensus       528 aalgLGll~~g~~---------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn--------~~aIq~LL~~~~~d~  590 (963)
T 4ady_A          528 LAVGLALINYGRQ---------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGN--------NSAVKRLLHVAVSDS  590 (963)
T ss_dssp             HHHHHHHHTTTCG---------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC--------HHHHHHHHHHHHHCS
T ss_pred             HHHHHHhhhCCCh---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHhccCC
Confidence            9999998876544         35566666655 57889999999888754333331        12344444443 577


Q ss_pred             ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhh
Q 008827          390 EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAE  469 (552)
Q Consensus       390 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~  469 (552)
                      +..++..|+..|+.+..+.++.           ++.+..+|..+.++.+|..++++|+.+..|++.  .           
T Consensus       591 ~d~VRraAViaLGlI~~g~~e~-----------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~-----------  646 (963)
T 4ady_A          591 NDDVRRAAVIALGFVLLRDYTT-----------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--Q-----------  646 (963)
T ss_dssp             CHHHHHHHHHHHHHHTSSSCSS-----------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--H-----------
T ss_pred             cHHHHHHHHHHHHhhccCCHHH-----------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--H-----------
Confidence            8889999999999998777653           334444455558999999999999999988762  2           


Q ss_pred             hhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcC--CCccHHHHHHHHHHHHh
Q 008827          470 NKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVND--PCLDVKLRVKTALEQFN  545 (552)
Q Consensus       470 ~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~--~~~~v~~~a~~al~~~~  545 (552)
                       .++..|..++++.|..||.+|+.+++.+.....+....+...+     +..|.+...+  .++..+.-|..|.+.+-
T Consensus       647 -~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~-----l~~L~~~~~dk~~d~~~~fga~iAqGll~  718 (963)
T 4ady_A          647 -SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADI-----NKNFLSVITNKHQEGLAKFGACVAQGIMN  718 (963)
T ss_dssp             -HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHH-----HHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHH-----HHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence             2335778888999999999999999999852111111133333     4456666654  34557777777777654

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.93  E-value=4.3e-07  Score=76.33  Aligned_cols=218  Identities=18%  Similarity=0.168  Sum_probs=164.5

Q ss_pred             hccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCCh
Q 008827          289 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAED  367 (552)
Q Consensus       289 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~  367 (552)
                      .+..++..++++|.|.-+.++.+|...+.+++...++...     ..+..|+-+++ ++..........+++.++.-. |
T Consensus        29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~e-----pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-P  102 (253)
T 2db0_A           29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE-----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-P  102 (253)
T ss_dssp             HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHH-----HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-H
T ss_pred             hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-H
Confidence            5677889999999999999999999999999988876553     34566777654 566667677788888887633 3


Q ss_pred             HhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHH
Q 008827          368 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLG  447 (552)
Q Consensus       368 ~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~  447 (552)
                          +++. ..+|.++.-.+-.++.++-+...+|..+...+|.....+++       -+..++.+ ++..-+..++..++
T Consensus       103 ----e~v~-~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~r-------di~smlts-kd~~Dkl~aLnFi~  169 (253)
T 2db0_A          103 ----ELVK-SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVR-------DFMSMLSS-KNREDKLTALNFIE  169 (253)
T ss_dssp             ----HHHH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH-------HHHHHTSC-SSHHHHHHHHHHHH
T ss_pred             ----HHHH-hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHH-------HHHHHhcC-CChHHHHHHHHHHH
Confidence                2222 35777887788889999999999999999988876555544       34456665 88888888888888


Q ss_pred             hhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhc
Q 008827          448 NVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN  527 (552)
Q Consensus       448 ~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~  527 (552)
                      .+.....   +.+         ..++|.|..+|.+.|.-||..|+.+|.+++..    . ...+..    ++..+ +-++
T Consensus       170 alGen~~---~yv---------~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~----n-pklRki----i~~kl-~e~~  227 (253)
T 2db0_A          170 AMGENSF---KYV---------NPFLPRIINLLHDGDEIVRASAVEALVHLATL----N-DKLRKV----VIKRL-EELN  227 (253)
T ss_dssp             TCCTTTH---HHH---------GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS----C-HHHHHH----HHHHH-HHCC
T ss_pred             HHhccCc---ccc---------CcchHHHHHHHcCcchhhhHHHHHHHHHHHHc----C-HHHHHH----HHHHH-HHhc
Confidence            8876433   222         46789999999999999999999999999952    2 222232    12333 3347


Q ss_pred             CCCccHHHHHHHHHHHHhhh
Q 008827          528 DPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       528 ~~~~~v~~~a~~al~~~~~~  547 (552)
                      |++..|+..+..+|..+.-.
T Consensus       228 D~S~lv~~~V~egL~rl~l~  247 (253)
T 2db0_A          228 DTSSLVNKTVKEGISRLLLL  247 (253)
T ss_dssp             CSCHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHHHHHHHHH
Confidence            88999999999999987643

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.93  E-value=3.6e-07  Score=98.22  Aligned_cols=302  Identities=18%  Similarity=0.153  Sum_probs=199.5

Q ss_pred             hHHHHHhhc---C-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCC--------hhhHHHHHHHHH
Q 008827           79 LKRLTSLLG---G-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRF--------ARTRLLASLCLI  146 (552)
Q Consensus        79 i~~L~~lL~---~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~--------~~vr~~A~~~L~  146 (552)
                      +..|-..|.   + ++.++.-|+.+||.+.....+           ..+..|...+.+++        +.+|..|+..|.
T Consensus       394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-----------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-----------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-----------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-----------HHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            444555554   2 456777888888886544311           12344455555444        778888888888


Q ss_pred             HHhhhCCCcchhhhhHHhHHHHHHHhcCCC-CchhchHHHHHHHhh--cCCHHHHHHHHHhCcHHHHHHhhhcCCCChhh
Q 008827          147 VIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLI--AEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRR  223 (552)
Q Consensus       147 ~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~--~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~  223 (552)
                      ..+.....        ..+++.|.+++.++ ..++..|+.+|+-+.  +.+..         .+..|+..+.+. .+..+
T Consensus       463 la~~GS~~--------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~---------ai~~LL~~~~e~-~~e~v  524 (963)
T 4ady_A          463 LAAMGSAN--------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE---------AIHDMFTYSQET-QHGNI  524 (963)
T ss_dssp             HHSTTCCC--------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH---------HHHHHHHHHHHC-SCHHH
T ss_pred             HHhcCCCC--------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH---------HHHHHHHHHhcc-CcHHH
Confidence            75442211        34677788888644 345667777777552  33322         355666665544 35678


Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC-CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh-
Q 008827          224 FEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-  301 (552)
Q Consensus       224 ~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL-  301 (552)
                      +..++.+|+-+...+++         .++.+++.|. +.++-+|..++.+++--.-..        .....++.|++.+ 
T Consensus       525 rR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGT--------Gn~~aIq~LL~~~~  587 (963)
T 4ady_A          525 TRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGT--------GNNSAVKRLLHVAV  587 (963)
T ss_dssp             HHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS--------CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHhc
Confidence            88899999987655443         4667777776 678999999988876432221        2234567777766 


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHH-hhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHH
Q 008827          302 DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQ-LSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTAS  380 (552)
Q Consensus       302 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~  380 (552)
                      .+.+..+|..|+.+|+.+..+.+         ..++.+++ ++++.++.+|..+.+||+.++.+.+.        ..+++
T Consensus       588 ~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--------~~aid  650 (963)
T 4ady_A          588 SDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--------QSAID  650 (963)
T ss_dssp             HCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--------HHHHH
T ss_pred             cCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--------HHHHH
Confidence            47788999999999998876543         35667776 55678999999999999999764431        22566


Q ss_pred             HHHhhhcCCChhHHHHHHHHHHHhhcCCcch----HHHHHhhcCchHHHHHHHhcc-cCchhHHHHHHHHHHhhc
Q 008827          381 LLASLICDPEPSVQEQALALVRNLVDGRINS----VEYIFAEDGIILDAVGRQLRI-ASKAEIEIQGMYVLGNVA  450 (552)
Q Consensus       381 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~i~~~~~~~~~~l~~~L~~-~~~~~v~~~a~~~L~~la  450 (552)
                      .|..++.+++..|+..|+.+|+.+..+.++.    +..       ....|.+.+.+ +.++..+-.+..+.+-+-
T Consensus       651 ~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~-------~l~~L~~~~~dk~~d~~~~fga~iAqGll~  718 (963)
T 4ady_A          651 VLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVAD-------INKNFLSVITNKHQEGLAKFGACVAQGIMN  718 (963)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHH-------HHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHH-------HHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence            7888889999999999999999998775443    222       23444454443 245667777777666543

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.84  E-value=1.2e-07  Score=88.06  Aligned_cols=186  Identities=13%  Similarity=0.155  Sum_probs=141.5

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHH
Q 008827          251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRST  329 (552)
Q Consensus       251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~  329 (552)
                      -+.+.+.+++.+|..|..++..|..+....+.....  .-..+++.|...+. +++..++..|+.+++.++.........
T Consensus        17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~--~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~   94 (242)
T 2qk2_A           17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG--EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN   94 (242)
T ss_dssp             CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC--CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC--CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            345788889999999999999999997653222212  12366888888995 999999999999999998643322112


Q ss_pred             HHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC-
Q 008827          330 FIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR-  408 (552)
Q Consensus       330 ~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-  408 (552)
                      . -...++.++..+.+.+..+|..+..+|.+++...+.        ...++.+...+.+.++.++..++..|..+.... 
T Consensus        95 ~-~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~  165 (242)
T 2qk2_A           95 Y-ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--------EAQQESIVESLSNKNPSVKSETALFIARALTRTQ  165 (242)
T ss_dssp             H-HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred             H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            1 235889999999999999999999999999764431        135677888899999999999999999976543 


Q ss_pred             cch-HHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcC
Q 008827          409 INS-VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT  451 (552)
Q Consensus       409 ~~~-~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~  451 (552)
                      ++. ....+..   +++.+...|++ ++++++..|..+++.++.
T Consensus       166 ~~~~~~~~l~~---l~p~l~~~l~D-~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          166 PTALNKKLLKL---LTTSLVKTLNE-PDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             GGGCCHHHHHH---HHHHHHHHHTS-SCHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHH---HHHHHHHHhcC-CChHHHHHHHHHHHHHHH
Confidence            331 1222221   78899999987 899999999999998774

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.82  E-value=2.6e-05  Score=87.52  Aligned_cols=505  Identities=11%  Similarity=0.048  Sum_probs=261.9

Q ss_pred             cHHHHHHHHHHHHHHHcCCCCCC--cccccc---cch-HHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchH
Q 008827            7 YMEVVDAGARSLKMIYQSKMAPK--YDFLQE---ENM-EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLK   80 (552)
Q Consensus         7 ~~~~~~~~l~~l~~l~~~~~~~~--~~~~~~---~~i-~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~   80 (552)
                      +..+...|+..|++.....-...  ...+++   ..| ..++..+.+++..++..++.+++.+++.+-...+   -+.++
T Consensus        50 ~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W---p~ll~  126 (960)
T 1wa5_C           50 PLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW---PTLLS  126 (960)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC---TTHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch---hHHHH
Confidence            45666777888887754321110  011211   122 3466666555678888999999888642110000   12456


Q ss_pred             HHHHhhcC-CHHHHHHHHHHHHHHhcCCh------hhhhhhccccCCccHHHHHH-------HHhcCCh---------hh
Q 008827           81 RLTSLLGG-SLIQRDASLESIATIFKNNP------EVVSQFVGPDTGRTLSCIIE-------IVKDRFA---------RT  137 (552)
Q Consensus        81 ~L~~lL~~-~~~v~~~al~~L~~l~~~~~------~~~~~~~~~~~~~~l~~l~~-------ll~~~~~---------~v  137 (552)
                      .|++.+++ +...+..++.+|..+++...      +....+... -....+.++.       .+++...         .+
T Consensus       127 ~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~-l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~  205 (960)
T 1wa5_C          127 DLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLV-LDVFTAPFLNLLKTVDEQITANENNKASLNILFDV  205 (960)
T ss_dssp             HHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            77777765 45677889999999986431      111111000 0112232322       2343322         22


Q ss_pred             HHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCC----------C------chhchHHHHHHHhhcCCHHHHHHH
Q 008827          138 RLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP----------G------RVGDEASFAFSSLIAEKEDMQKLA  201 (552)
Q Consensus       138 r~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~----------~------~v~~~a~~~L~~l~~~~~~~~~~~  201 (552)
                      ...+.++++.+....-...... .-...++.+.+++...          .      .++..++.++..+....+..-.. 
T Consensus       206 ~~~~~k~~~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~-  283 (960)
T 1wa5_C          206 LLVLIKLYYDFNCQDIPEFFED-NIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGP-  283 (960)
T ss_dssp             HHHHHHHHHHHHSSCCCHHHHH-THHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHH-
T ss_pred             HHHHHHHHHHHhhccchHHHHH-HHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            2335666665543221111100 1134566667766421          0      13556677777776554432111 


Q ss_pred             HHhCcHHHHHHhhhc---CCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHH-----HHHhcC--------------
Q 008827          202 FEVNGVDKLYNHLQK---GSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKL-----VVDALA--------------  259 (552)
Q Consensus       202 ~~~~~i~~L~~~L~~---~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~-----lv~~L~--------------  259 (552)
                      +-...++...+.+.+   ...+..++..++..+..++.. +..+..+...+.++.     ++..+.              
T Consensus       284 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~-~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~  362 (960)
T 1wa5_C          284 MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI-PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPI  362 (960)
T ss_dssp             HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS-HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc-HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHH
Confidence            112234444554532   223466788888888887742 333322211122333     333331              


Q ss_pred             ---------CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc------CCCHHHHHHHHHHHHHhhcCCc
Q 008827          260 ---------HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD------DTSTAVQVAALGAISNIVVDFT  324 (552)
Q Consensus       260 ---------~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~------~~~~~v~~~a~~aL~nl~~~~~  324 (552)
                               +.....|.+|..+|..++...+.     .+-..+++.+.+.+.      ++++..+++|..+++.++.+..
T Consensus       363 e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~-----~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~  437 (960)
T 1wa5_C          363 EYIRRDLEGSDTDTRRRACTDFLKELKEKNEV-----LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGN  437 (960)
T ss_dssp             HHHHHHHHC----CHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSC
T ss_pred             HHHHhccCcccccCcHHHHHHHHHHHHHHcch-----hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhc
Confidence                     11235788999999998876321     122233444444454      5678899999999999975321


Q ss_pred             --h----------hHHHHHhhCcHHHHHHhhcCC---CHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCC
Q 008827          325 --T----------RRSTFIRLGGVKLLVQLSKSM---DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDP  389 (552)
Q Consensus       325 --~----------~~~~~~~~g~i~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~  389 (552)
                        .          .-..++.    ..++..+.++   ++.+|..++|+++.++....++.     -...++.+++.+.++
T Consensus       438 ~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~-----l~~~l~~l~~~L~d~  508 (960)
T 1wa5_C          438 ITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQ-----LIELMPILATFLQTD  508 (960)
T ss_dssp             CBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHH-----HHHHHHHHHHHTTCS
T ss_pred             cccCCcccccccccHHHHHH----HHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHH-----HHHHHHHHHHHhCCC
Confidence              0          0111111    1223334555   88999999999999987653321     233567788888888


Q ss_pred             ChhHHHHHHHHHHHhhcCCc-----------chHHHHHhhcCchHHHHHHHhcccC----chhHHHHHHHHHHhhcCCCh
Q 008827          390 EPSVQEQALALVRNLVDGRI-----------NSVEYIFAEDGIILDAVGRQLRIAS----KAEIEIQGMYVLGNVATGKE  454 (552)
Q Consensus       390 ~~~v~~~a~~~L~~l~~~~~-----------~~~~~i~~~~~~~~~~l~~~L~~~~----~~~v~~~a~~~L~~la~~~~  454 (552)
                      ++.|+..|+++|.+++....           +.+...+.   .+++.|..+++..+    +....+.++.+|+.++....
T Consensus       509 ~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~---~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~  585 (960)
T 1wa5_C          509 EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE---ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE  585 (960)
T ss_dssp             CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH---HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT
T ss_pred             ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHH---HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH
Confidence            89999999999999987421           11111111   15666666666521    11133455555555443111


Q ss_pred             hhHHHHHHHhhHhhhhhhHHHHHHhh----cC-CChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC
Q 008827          455 SHKEAVMDQLLLRAENKAQSCIIKFL----QS-NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP  529 (552)
Q Consensus       455 ~~~~~i~~~~~~~~~~~~v~~Lv~lL----~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~  529 (552)
                      +.....+        ..+++.|...+    ++ .+...+..+..+|+.++..   ..++....+ +..+.+.+..+++..
T Consensus       586 ~~~~p~~--------~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~---~~~~~~~~~-~~~~~p~~~~iL~~~  653 (960)
T 1wa5_C          586 DSIQPLF--------PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY---TQRQNLPLL-VDSMMPTFLTVFSED  653 (960)
T ss_dssp             TTTGGGH--------HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT---SCGGGHHHH-HHHHHHHHHHHHHTT
T ss_pred             HhhhhHH--------HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc---CCcchHHHH-HHHHHHHHHHHHHhh
Confidence            1111111        12223333333    33 3566777788888888752   112222222 344567888877655


Q ss_pred             CccHHHHHHHHHHHHhhh
Q 008827          530 CLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       530 ~~~v~~~a~~al~~~~~~  547 (552)
                      ..+..+.+...+..+.+.
T Consensus       654 ~~~~~~~~~~i~~~l~~~  671 (960)
T 1wa5_C          654 IQEFIPYVFQIIAFVVEQ  671 (960)
T ss_dssp             CTTTHHHHHHHHHHHHHH
T ss_pred             hHhhHHHHHHHHHHHHHh
Confidence            556666666666655544

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.80  E-value=6.2e-06  Score=92.52  Aligned_cols=388  Identities=11%  Similarity=0.064  Sum_probs=213.8

Q ss_pred             cHHHHHHHHhc--CChhhHHHHHHHHHHHhhhCCC-----cchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcC
Q 008827          122 TLSCIIEIVKD--RFARTRLLASLCLIVIRNASPC-----YLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAE  193 (552)
Q Consensus       122 ~l~~l~~ll~~--~~~~vr~~A~~~L~~l~~~~~~-----~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~  193 (552)
                      ....++..+.+  .+..+|..|+-.|.|.....-.     ..........+=..+++.+. ++..++..++.+++.++..
T Consensus        36 ~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~  115 (960)
T 1wa5_C           36 FGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADS  115 (960)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            34455665533  4679999999999998754211     01111112222333344333 4567888999999888753


Q ss_pred             C-HHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCC------hhHHHHHH--hcccHHHHHH-------h
Q 008827          194 K-EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL------ECCRSRCL--SLQVLKLVVD-------A  257 (552)
Q Consensus       194 ~-~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~------~~~~~~~~--~~~~l~~lv~-------~  257 (552)
                      + +. +.    .+.++.|++.+.++  ++..++.++.++..++...      ++.+..+.  -....+.+++       .
T Consensus       116 d~p~-~W----p~ll~~L~~~l~s~--~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~  188 (960)
T 1wa5_C          116 DFPD-RW----PTLLSDLASRLSND--DMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQ  188 (960)
T ss_dssp             HSTT-TC----TTHHHHHHTTCCSS--CTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCcc-ch----hHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 10 00    35577888877665  3667899999999998632      12222221  1122333333       3


Q ss_pred             cCCCCH---------HHHHHHHHHHHHhhcccccccchhhhc--cCcHHHHHHhhcCC------C---------HHHHHH
Q 008827          258 LAHDSS---------DVRSAACMCLRSVSRSIKNLSAGSFMN--ETIVIPLVRLLDDT------S---------TAVQVA  311 (552)
Q Consensus       258 L~~~~~---------~v~~~a~~~L~~ls~~~~~~~~~~~~~--~~~i~~Lv~lL~~~------~---------~~v~~~  311 (552)
                      +++...         .+...+++++++++...  .... +.+  ...++.+.+++...      +         ..++..
T Consensus       189 l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~  265 (960)
T 1wa5_C          189 ITANENNKASLNILFDVLLVLIKLYYDFNCQD--IPEF-FEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSS  265 (960)
T ss_dssp             TTCCC--CHHHHHHHHHHHHHHHHHHHHHSSC--CCHH-HHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcc--chHH-HHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHH
Confidence            554321         33344667777665321  1111 111  23445556665321      1         257788


Q ss_pred             HHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc-----CCCHHHHHHHHHHHHHhcccCChHhHH-----HHHHhhcHHH
Q 008827          312 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-----SMDSTIRLNALRALRNLIFLAEDKCKE-----EIFMELTASL  381 (552)
Q Consensus       312 a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~-----~i~~~~~~~~  381 (552)
                      ++.++..++..++..-.... ...++..++.+.     ..++.++..++..+..++..  +..+.     ..+....-..
T Consensus       266 ~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~--~~~~~~~~~~~~l~~li~~~  342 (960)
T 1wa5_C          266 IQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI--PKYFEIFNNESAMNNITEQI  342 (960)
T ss_dssp             HHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS--HHHHGGGCSHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc--HhHHHHHcCchHHHHHHHHH
Confidence            88888887765543221111 234555555553     34678899999999887652  11111     1111111122


Q ss_pred             HHhhhc---------CCC--------------hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-----c
Q 008827          382 LASLIC---------DPE--------------PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-----A  433 (552)
Q Consensus       382 l~~ll~---------~~~--------------~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~-----~  433 (552)
                      ++..+.         ++|              ...+..|..+|..++...++   .++..   +++.+.+.+..     +
T Consensus       343 i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v~~~---~l~~i~~~l~~~~~~~~  416 (960)
T 1wa5_C          343 ILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LVTNI---FLAHMKGFVDQYMSDPS  416 (960)
T ss_dssp             HHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HHHHH---HHHHHHHHHHHHHC---
T ss_pred             hHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hHHHH---HHHHHHHHHHHhccCcc
Confidence            223321         011              13455666677666654321   12211   34555555551     3


Q ss_pred             CchhHHHHHHHHHHhhcCCC--hh----------hHHHHHHHhhHhhhhhhHHHHHHhhcCC---ChhHHHHHHHHHHhh
Q 008827          434 SKAEIEIQGMYVLGNVATGK--ES----------HKEAVMDQLLLRAENKAQSCIIKFLQSN---DSRLRTAAVWAVLNL  498 (552)
Q Consensus       434 ~~~~v~~~a~~~L~~la~~~--~~----------~~~~i~~~~~~~~~~~~v~~Lv~lL~~~---~~~~~~~a~~~l~~l  498 (552)
                      +++..++.|+.+++.++.+.  ..          ....++           ...+...|+++   ++.+|..|+|+++.+
T Consensus       417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l-----------~~~v~p~l~~~~~~~p~vr~~a~~~lg~~  485 (960)
T 1wa5_C          417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF-----------TKEIAPDLTSNNIPHIILRVDAIKYIYTF  485 (960)
T ss_dssp             -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH-----------HHHTHHHHHCSSCSCHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH-----------HHHhHHHhcCCCCCCceehHHHHHHHHHH
Confidence            67789999999999998532  10          111121           12344455666   889999999999999


Q ss_pred             cCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          499 TCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       499 ~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      +..   -.++..     ..+++.+.+.+.|+++.|+..|++||.+|.+.
T Consensus       486 ~~~---~~~~~l-----~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          486 RNQ---LTKAQL-----IELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             GGG---SCHHHH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             Hhh---CCHHHH-----HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            841   122222     23467778878887888999999999998874

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.79  E-value=2.7e-06  Score=71.60  Aligned_cols=216  Identities=14%  Similarity=0.148  Sum_probs=164.8

Q ss_pred             hcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCch
Q 008827          247 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTT  325 (552)
Q Consensus       247 ~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~  325 (552)
                      +..++..++.+|.++-|.|+++|...+..++...+.+.      ...+..|+.+++ ++.-..-.+.+.+++.++...+.
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~------epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe  103 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLY------EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE  103 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGH------HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHH------HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence            44578999999999999999999999999988755432      244566777765 56666667788899988876554


Q ss_pred             hHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827          326 RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV  405 (552)
Q Consensus       326 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~  405 (552)
                      ..     .+.+|.+..-..-+++.+|.+...+|..++.. .|+.-.     ++..-+..++.++|..-+..|+.++.-+.
T Consensus       104 ~v-----~~vVp~lfanyrigd~kikIn~~yaLeeIara-nP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alG  172 (253)
T 2db0_A          104 LV-----KSMIPVLFANYRIGDEKTKINVSYALEEIAKA-NPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMG  172 (253)
T ss_dssp             HH-----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-CHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred             HH-----HhhHHHHHHHHhcCCccceecHHHHHHHHHHh-ChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence            22     36788888888888999999999999999874 343332     34456777888998777777777777776


Q ss_pred             cCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCCh
Q 008827          406 DGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS  485 (552)
Q Consensus       406 ~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~  485 (552)
                      .+.   ..++.-    .++.+..+|.+ .+.-|+.++.-+|++++..+++.|..+..             -+.-+.+++.
T Consensus       173 en~---~~yv~P----fLprL~aLL~D-~deiVRaSaVEtL~~lA~~npklRkii~~-------------kl~e~~D~S~  231 (253)
T 2db0_A          173 ENS---FKYVNP----FLPRIINLLHD-GDEIVRASAVEALVHLATLNDKLRKVVIK-------------RLEELNDTSS  231 (253)
T ss_dssp             TTT---HHHHGG----GHHHHHGGGGC-SSHHHHHHHHHHHHHHHTSCHHHHHHHHH-------------HHHHCCCSCH
T ss_pred             ccC---ccccCc----chHHHHHHHcC-cchhhhHHHHHHHHHHHHcCHHHHHHHHH-------------HHHHhcCcHH
Confidence            554   445444    57888888887 88899999999999999988876654442             3455678888


Q ss_pred             hHHHHHHHHHHhhcC
Q 008827          486 RLRTAAVWAVLNLTC  500 (552)
Q Consensus       486 ~~~~~a~~~l~~l~~  500 (552)
                      .+++.....|+.++.
T Consensus       232 lv~~~V~egL~rl~l  246 (253)
T 2db0_A          232 LVNKTVKEGISRLLL  246 (253)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            899999888988874

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.77  E-value=7.6e-07  Score=78.32  Aligned_cols=187  Identities=18%  Similarity=0.197  Sum_probs=145.1

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHH
Q 008827          334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVE  413 (552)
Q Consensus       334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  413 (552)
                      +.+..|.+++++.|+.++.+++.++..+....+...+...++. .++.+++++.+.|..+.-.|+.+++.+..+-|-.-+
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            5778899999999999999999999999876554455555544 689999999999999999999999999988654434


Q ss_pred             HHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHH
Q 008827          414 YIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVW  493 (552)
Q Consensus       414 ~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~  493 (552)
                      ....    +...+..++.+ +++-.+..++-.++.+-..+.  .            ..++..+.+++.|.|..++..|..
T Consensus       112 ~y~K----l~~aL~dlik~-~~~il~~eaae~Lgklkv~~~--~------------~~V~~~l~sLl~Skd~~vK~agl~  172 (265)
T 3b2a_A          112 TFLK----AAKTLVSLLES-PDDMMRIETIDVLSKLQPLED--S------------KLVRTYINELVVSPDLYTKVAGFC  172 (265)
T ss_dssp             HHHH----HHHHHHHHTTS-CCHHHHHHHHHHHHHCCBSCC--C------------HHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             HHHH----HHHHHHHHhcC-CCchHHHHHHHHhCcCCcccc--h------------HHHHHHHHHHHhCCChhHHHHHHH
Confidence            3333    56778888885 899999999999998843222  2            233457888889999999999999


Q ss_pred             HHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          494 AVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       494 ~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      ++.+++...  +.++.     -.+++..+-.++++.++.++++|..++..++..
T Consensus       173 ~L~eia~~S--~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          173 LFLNMLNSS--ADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             HHHHHGGGC--SSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHhhccc--CCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            999998521  11111     123556677788888999999999999888654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.74  E-value=1.1e-06  Score=77.28  Aligned_cols=225  Identities=13%  Similarity=0.155  Sum_probs=162.2

Q ss_pred             cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhH
Q 008827          291 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCK  370 (552)
Q Consensus       291 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  370 (552)
                      .+.+..|..+|.+.|+.++..|..+|.++....+.......-...++.+++++++.|+.+...|+.+|..+..+.+.. .
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~-~  110 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG-S  110 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC-H
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC-H
Confidence            457788999999999999999999999998764443334444678999999999999999999999999998765432 1


Q ss_pred             HHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhc
Q 008827          371 EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVA  450 (552)
Q Consensus       371 ~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la  450 (552)
                      ..+.  .....+..++.++++-+++.+...++.+--..+  ...       +++++.+++.| ++..++..++.++.+++
T Consensus       111 ~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~--~~~-------V~~~l~sLl~S-kd~~vK~agl~~L~eia  178 (265)
T 3b2a_A          111 KTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLED--SKL-------VRTYINELVVS-PDLYTKVAGFCLFLNML  178 (265)
T ss_dssp             HHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC--CHH-------HHHHHHHHHTC-SSHHHHHHHHHHHHHHG
T ss_pred             HHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc--hHH-------HHHHHHHHHhC-CChhHHHHHHHHHHHhh
Confidence            1111  145678888899999999999999999832221  111       67888888855 99999999999999999


Q ss_pred             CCCh--hhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhh-c
Q 008827          451 TGKE--SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMV-N  527 (552)
Q Consensus       451 ~~~~--~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll-~  527 (552)
                      ..+.  .+..            +++.-+-.+|++.|+.++..|..++-.+....  -..+-...+.  ++......+. .
T Consensus       179 ~~S~D~~i~~------------~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p--i~~~~~~~~~--~~~~~v~~l~~~  242 (265)
T 3b2a_A          179 NSSADSGHLT------------LILDEIPSLLQNDNEFIVELALDVLEKALSFP--LLENVKIELL--KISRIVDGLVYR  242 (265)
T ss_dssp             GGCSSCCCGG------------GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC--CCSCCHHHHH--HHHHHHHHGGGC
T ss_pred             cccCCHHHHH------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc--ccHhHHHHHH--HHHHHHHHHHHh
Confidence            8443  3333            33345678899999999999999999998522  1111111111  1223333344 4


Q ss_pred             CCCccHHHHHHHHHHHH
Q 008827          528 DPCLDVKLRVKTALEQF  544 (552)
Q Consensus       528 ~~~~~v~~~a~~al~~~  544 (552)
                      .+.|.++++|...-..+
T Consensus       243 ~~~~~~~~ka~~v~~~l  259 (265)
T 3b2a_A          243 EGAPIIRLKAKKVSDLI  259 (265)
T ss_dssp             SSCHHHHHHHHHHHHHH
T ss_pred             cCChhHHHHHHHHHHHH
Confidence            67888999987665544

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.74  E-value=1e-07  Score=88.58  Aligned_cols=184  Identities=11%  Similarity=0.171  Sum_probs=136.7

Q ss_pred             HHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC-CCCHHHHHHHHHHHHHhhcccccccchhh
Q 008827          210 LYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGSF  288 (552)
Q Consensus       210 L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~  288 (552)
                      +.+.+.+.  ++..|..++..|..+....+..... .-..+++.+...+. +.+..++..|+.++..++......-.  -
T Consensus        20 l~~~l~s~--~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~--~   94 (242)
T 2qk2_A           20 FYDKLEEK--KWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS--N   94 (242)
T ss_dssp             HHHHHTCS--SHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH--H
T ss_pred             HHhhhccC--CHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH--H
Confidence            55556544  5889999999999887642221000 01246788888894 99999999999999999865332111  1


Q ss_pred             hccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChH
Q 008827          289 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK  368 (552)
Q Consensus       289 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~  368 (552)
                      .-..++|.++..+.++++.+|..|..+|.+++...+.       ...++.+...+++.++.+|..++..+..+....+++
T Consensus        95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~  167 (242)
T 2qk2_A           95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPT  167 (242)
T ss_dssp             HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence            3356889999999999999999999999999865431       236788889999999999999999999975543332


Q ss_pred             h-HHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhc
Q 008827          369 C-KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD  406 (552)
Q Consensus       369 ~-~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  406 (552)
                      . -...+ ...++.+..++.+++++++..|..+++.+..
T Consensus       168 ~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          168 ALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             GCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            1 11222 2468899999999999999999999988864

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.65  E-value=2.9e-07  Score=89.05  Aligned_cols=276  Identities=11%  Similarity=0.073  Sum_probs=153.9

Q ss_pred             hHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 008827           38 MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVG  116 (552)
Q Consensus        38 i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~  116 (552)
                      ...+++++.+++...+....-.+.++++.++.-     .=++..+.+=+++ ++-+|-.|+++|+++...  +..     
T Consensus        70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~-----iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~-----  137 (355)
T 3tjz_B           70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV-----IIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TML-----  137 (355)
T ss_dssp             HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG-----GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTH-----
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH-----HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHH-----
Confidence            345667888999999999988888888763321     1234555555665 678999999999998643  222     


Q ss_pred             ccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCH
Q 008827          117 PDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKE  195 (552)
Q Consensus       117 ~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~  195 (552)
                         ....+.+.+.+.|.+|.||..|+.+...+....++     .+ .++++.+-+++.+ ++-|+..|..+|..+...+.
T Consensus       138 ---~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe-----~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~  208 (355)
T 3tjz_B          138 ---QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD-----VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR  208 (355)
T ss_dssp             ---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH-----HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred             ---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH-----HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch
Confidence               23445677789999999999999999999875432     22 4688999999985 45678888888888876543


Q ss_pred             HHHHHHHHhCcHHHHHHhhhcCC-CChhhHHHHHHHHHHhhcCC-hhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHH
Q 008827          196 DMQKLAFEVNGVDKLYNHLQKGS-LHPRRFEGILLALADMCSKL-ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCL  273 (552)
Q Consensus       196 ~~~~~~~~~~~i~~L~~~L~~~~-~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L  273 (552)
                      .         .+.+++..+.... .++-.+-..++.+..++..+ +.     .....++.+.++|++.++.|...|++++
T Consensus       209 ~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I  274 (355)
T 3tjz_B          209 L---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI  274 (355)
T ss_dssp             H---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred             H---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            2         3456666555431 12333334455555555433 22     2345788889999999999999999999


Q ss_pred             HHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHH
Q 008827          274 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN  353 (552)
Q Consensus       274 ~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~  353 (552)
                      ..+.......      -..++..|..+|.++++++|..|...|..++...+.   .+.  ..-.-+.+++.++|..+...
T Consensus       275 ~~l~~~~~~~------~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~---~v~--~~n~~ie~li~d~n~sI~t~  343 (355)
T 3tjz_B          275 VNLPGCSAKE------LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS---AVT--ACNLDLENLVTDANRSIATL  343 (355)
T ss_dssp             TC-----------------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------
T ss_pred             HhccCCCHHH------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH---HHH--HHHHHHHHHccCCcHhHHHH
Confidence            9886532211      124456778888899999999999999888865543   121  23445678888888888877


Q ss_pred             HHHHHH
Q 008827          354 ALRALR  359 (552)
Q Consensus       354 a~~aL~  359 (552)
                      |+.+|-
T Consensus       344 Aittll  349 (355)
T 3tjz_B          344 AITTLL  349 (355)
T ss_dssp             ------
T ss_pred             HHHHhh
Confidence            776654

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.65  E-value=2.4e-06  Score=82.62  Aligned_cols=246  Identities=11%  Similarity=0.068  Sum_probs=158.5

Q ss_pred             ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 008827          249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS  328 (552)
Q Consensus       249 ~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~  328 (552)
                      .+.+.+++++.+++..+|+-..-.+.+++...+.     ..  =++..+.+=++++++-+|..|..+++++....  .. 
T Consensus        68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e-----~i--Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~-  137 (355)
T 3tjz_B           68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED-----VI--IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--ML-  137 (355)
T ss_dssp             HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC-----GG--GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--TH-
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH-----HH--HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HH-
Confidence            3567788899999999999999889888776211     11  34677888889999999999999999998532  22 


Q ss_pred             HHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC
Q 008827          329 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  408 (552)
Q Consensus       329 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  408 (552)
                          ....+.+.+.+.+.++.||..|+.+..++... .|+    +++ +.++.+.+++.+.++-++..|+.++..+...+
T Consensus       138 ----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe----~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          138 ----QAIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFD----VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             ----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHH----HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             ----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHH----HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence                13556777889999999999999999999763 343    232 57889999999999999999999999998765


Q ss_pred             cchHHHHHhhcCchHHHHHHHhccc--CchhHHHHHHHHHHhhcCCC-hhhHHHHHHHhhHhhhhhhHHHHHHhhcCCCh
Q 008827          409 INSVEYIFAEDGIILDAVGRQLRIA--SKAEIEIQGMYVLGNVATGK-ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS  485 (552)
Q Consensus       409 ~~~~~~i~~~~~~~~~~l~~~L~~~--~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~  485 (552)
                      +..           +..++..+...  .++-.+...+..+..+..++ +...            ..+++.+...|++.++
T Consensus       208 ~~a-----------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~------------~~~~~~l~~~L~~~~~  264 (355)
T 3tjz_B          208 RLA-----------VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD------------SPLFDFIESCLRNKHE  264 (355)
T ss_dssp             HHH-----------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------------------CCCCCSSH
T ss_pred             hHH-----------HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH------------HHHHHHHHHHHcCCCh
Confidence            432           33333333321  13434444445554555443 2222            3444677888899999


Q ss_pred             hHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhh
Q 008827          486 RLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  546 (552)
Q Consensus       486 ~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~  546 (552)
                      .|.-+|+.+|..+...   ..  .   . ...++..|..++.++++++|..|...|..+..
T Consensus       265 aVvyEa~k~I~~l~~~---~~--~---~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~  316 (355)
T 3tjz_B          265 MVVYEAASAIVNLPGC---SA--K---E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAM  316 (355)
T ss_dssp             HHHHHHHHHHTC--------------------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhccCC---CH--H---H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence            9999999999887631   11  1   1 12345667777777778888776655544443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.63  E-value=8.2e-09  Score=85.96  Aligned_cols=120  Identities=13%  Similarity=0.151  Sum_probs=91.0

Q ss_pred             hcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhh
Q 008827          377 LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESH  456 (552)
Q Consensus       377 ~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~  456 (552)
                      ...+.+..+|+++++.++..++++|+++...              .++.|...|.+ +++.++..++++|+++..     
T Consensus        12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------------~~~~L~~~L~d-~~~~vR~~A~~aL~~~~~-----   71 (131)
T 1te4_A           12 SGLVPRGSHMADENKWVRRDVSTALSRMGDE--------------AFEPLLESLSN-EDWRIRGAAAWIIGNFQD-----   71 (131)
T ss_dssp             ---------CCSSCCCSSSSCCSSTTSCSST--------------THHHHHHGGGC-SCHHHHHHHHHHHGGGCS-----
T ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------------HHHHHHHHHcC-CCHHHHHHHHHHHHhcCC-----
Confidence            4577888999999999999999888766422              24677788887 899999999999999863     


Q ss_pred             HHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHH
Q 008827          457 KEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLR  536 (552)
Q Consensus       457 ~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~  536 (552)
                                   ...++.|+.+|+++++.+|..|+++|+++..               ..+++.|.++++|+++.||..
T Consensus        72 -------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---------------~~a~~~L~~~l~d~~~~vr~~  123 (131)
T 1te4_A           72 -------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------------ERVRAAMEKLAETGTGFARKV  123 (131)
T ss_dssp             -------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------------HHHHHHHHHHTTSCCTHHHHH
T ss_pred             -------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------HHHHHHHHHHHhCCCHHHHHH
Confidence                         1234778888999999999999999999872               124788999999999999999


Q ss_pred             HHHHHHHH
Q 008827          537 VKTALEQF  544 (552)
Q Consensus       537 a~~al~~~  544 (552)
                      |.+||.+|
T Consensus       124 A~~aL~~i  131 (131)
T 1te4_A          124 AVNYLETH  131 (131)
T ss_dssp             HHHHGGGC
T ss_pred             HHHHHHhC
Confidence            99998764

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.58  E-value=1.5e-06  Score=80.78  Aligned_cols=191  Identities=11%  Similarity=0.067  Sum_probs=139.0

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHH-hhcccccccchhhhc-cCcHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCc-hhHH-
Q 008827          254 VVDALAHDSSDVRSAACMCLRS-VSRSIKNLSAGSFMN-ETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFT-TRRS-  328 (552)
Q Consensus       254 lv~~L~~~~~~v~~~a~~~L~~-ls~~~~~~~~~~~~~-~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~-~~~~-  328 (552)
                      +.+.+.+.+|.-|..+...|.. +..+.+.+... -.+ ..++..|.+.+ ++++..++..|+.+|+.++.+.. +... 
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~-~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKST-SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCT-TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccC-cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            5667789999999999999999 86543333210 011 35677888888 79999999999999999986443 2111 


Q ss_pred             HHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC
Q 008827          329 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  408 (552)
Q Consensus       329 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  408 (552)
                      ... .-.++.+++.+++....++..+..++..++...++..- .-.-...++.++..+++.++.+++.++.+|..++...
T Consensus       100 ~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~-~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLAS-SGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCT-TCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccccc-CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            111 24789999999999999999999999888765432100 0000125678888899999999999999999998655


Q ss_pred             c---chHHHHH-hhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcC
Q 008827          409 I---NSVEYIF-AEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT  451 (552)
Q Consensus       409 ~---~~~~~i~-~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~  451 (552)
                      +   ......+ ..   +++.+.+.+++ .++++|..|..+++.++.
T Consensus       178 ~~~~~~l~~~l~~~---iip~l~~~l~D-~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDE---VVPIVIQIVND-TQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTT---HHHHHHHHHTC-SSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHH---HHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence            4   2233333 22   79999999988 899999999999988764

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.53  E-value=0.0001  Score=82.81  Aligned_cols=481  Identities=11%  Similarity=0.066  Sum_probs=241.6

Q ss_pred             ccchHHHHHhhcCC------CCcchHHHHHHHHhhcCC-----h-hhH----HHHHhcCchHHHHHhh----cC--CH--
Q 008827           35 EENMEFLLSLLNNE------SENVSGLGASIISHSCKT-----S-LEQ----KLLFDAGVLKRLTSLL----GG--SL--   90 (552)
Q Consensus        35 ~~~i~~l~~ll~~~------~~~~~~~a~~~l~~~~~~-----~-~~~----~~l~~~g~i~~L~~lL----~~--~~--   90 (552)
                      ++.++.++..++++      ++..++.+..++..+++.     . ..|    ..+.  ..++.++.++    ..  ++  
T Consensus       121 p~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~--~~~~~vl~ll~~~l~~~~~~~~  198 (971)
T 2x1g_F          121 PGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIA--KRVQLVIHTVERYLKLQMNRVW  198 (971)
T ss_dssp             -----HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHH--TTHHHHHHHHHHHHHHHTTSCC
T ss_pred             cHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccCCCC
Confidence            34667788888754      455778888888877642     0 111    2222  2244444443    31  22  


Q ss_pred             -----HHHHHHHHHHHHHhc--CChhhhhhhccccCCccHHHHHHHH----------------hcCChhhHHHHHHHHHH
Q 008827           91 -----IQRDASLESIATIFK--NNPEVVSQFVGPDTGRTLSCIIEIV----------------KDRFARTRLLASLCLIV  147 (552)
Q Consensus        91 -----~v~~~al~~L~~l~~--~~~~~~~~~~~~~~~~~l~~l~~ll----------------~~~~~~vr~~A~~~L~~  147 (552)
                           .++..++.|+.....  .-+..   .    ....++.++. +                .++++..|..|+.|+..
T Consensus       199 ~~~~~~~~~~al~~l~~~~~~~~ip~~---~----~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~  270 (971)
T 2x1g_F          199 DAEAYSNMNRAVKCVGTWIKNIGYTIE---G----CVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVN  270 (971)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSCCCGG---G----HHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHH
T ss_pred             CccchhHHHHHHHHHHHHHhhCCcCcc---c----cccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHH
Confidence                 688899999987554  21111   1    1234455555 3                12567899999999999


Q ss_pred             HhhhCCCcchhhhhHHhHHHHHHHhc-------C-CCC---chhchHHHHHHHhhcCCHHHHH-H---------HHHhCc
Q 008827          148 IRNASPCYLQDVGIKTKLINNLLELL-------D-DPG---RVGDEASFAFSSLIAEKEDMQK-L---------AFEVNG  206 (552)
Q Consensus       148 l~~~~~~~~~~~~~~~g~i~~Lv~ll-------~-~~~---~v~~~a~~~L~~l~~~~~~~~~-~---------~~~~~~  206 (552)
                      +............+ ...+|.++.+.       . ++.   +.....+..+..++......-. .         -.-...
T Consensus       271 i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  349 (971)
T 2x1g_F          271 IIIQPDCHNYPKTA-FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRI  349 (971)
T ss_dssp             HHHCSGGGGCHHHH-HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHcCccccccHHHH-HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHH
Confidence            88743211111111 23444444422       2 222   4445556666666543322110 0         000122


Q ss_pred             HHHHHHhhhcC---CCChhhHHHHHHHHHHhhcC---------ChhHHHHHHh--cccHHHHHHhcCCC-C---------
Q 008827          207 VDKLYNHLQKG---SLHPRRFEGILLALADMCSK---------LECCRSRCLS--LQVLKLVVDALAHD-S---------  262 (552)
Q Consensus       207 i~~L~~~L~~~---~~~~~~~~~a~~aL~~l~~~---------~~~~~~~~~~--~~~l~~lv~~L~~~-~---------  262 (552)
                      ++.++.+...+   ..++++...++..+..++..         .+..+..+..  ..+++.++..+.-+ +         
T Consensus       350 l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~  429 (971)
T 2x1g_F          350 VQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSD  429 (971)
T ss_dssp             HHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHH
T ss_pred             HHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHh
Confidence            34444433231   12466888888888777531         1111111111  13555555555321 1         


Q ss_pred             -----HHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008827          263 -----SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-----TSTAVQVAALGAISNIVVDFTTRRSTFIR  332 (552)
Q Consensus       263 -----~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~~~  332 (552)
                           ...|..+..++..++...+.   .  .-.-+++.+-..+.+     +++..+++|+.+++.++.+........+.
T Consensus       430 e~~~f~~~R~~~~~~l~~~~~~~~~---~--~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~  504 (971)
T 2x1g_F          430 DLECFRCYRQDISDTFMYCYDVLND---Y--ILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIP  504 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCTT---H--HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhH---H--HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence                 14667777788777654221   1  111222333333332     57889999999999998765432211111


Q ss_pred             hCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcch
Q 008827          333 LGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS  411 (552)
Q Consensus       333 ~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  411 (552)
                       ..++.+..+.. ++++.+|..++|+++.++...... . ..+ ...++.++..+ +  +.++..|++++.+++......
T Consensus       505 -~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~-~-~~l-~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~  577 (971)
T 2x1g_F          505 -RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN-P-AYI-PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQ  577 (971)
T ss_dssp             -HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CH-HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHH
T ss_pred             -HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC-H-HHH-HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHh
Confidence             12332223332 358899999999999987643211 1 111 13456666666 2  789999999999999765433


Q ss_pred             HHHHHhhcCchHHHHHHHhccc-CchhHHHHHHHHHHhhcCCC-hhhHHHHHHHhhHhhhhhhHHHHHHhhcCC--ChhH
Q 008827          412 VEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGK-ESHKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRL  487 (552)
Q Consensus       412 ~~~i~~~~~~~~~~l~~~L~~~-~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~--~~~~  487 (552)
                      ....+..   +++.+...+.+. -+.+.+..+..+++.++... +......+..++    ..++..+...++..  +...
T Consensus       578 l~p~~~~---ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll----~~l~~~l~~~~~~~~~~~~~  650 (971)
T 2x1g_F          578 LKPYADP---LLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIV----SPCFEELQAICQADSKTPAA  650 (971)
T ss_dssp             HHHHHHH---HHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHH----HHHHHHHHHHHTC---CHHH
T ss_pred             ccccHHH---HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH----HHHHHHHHHHHhcCCCChhh
Confidence            3332322   567777777652 24567778888888776532 223333443111    12223333444333  3333


Q ss_pred             HHHHHHHHHhhc---CCCCCC----C-----HHHHHHHHHCCcHHHHHhhhcC--CCccHHHHHHHHHHHHhh
Q 008827          488 RTAAVWAVLNLT---CSSSPG----S-----SGRLVKLHDAGIVSHVKNMVND--PCLDVKLRVKTALEQFNS  546 (552)
Q Consensus       488 ~~~a~~~l~~l~---~~~~~~----~-----~~~~~~l~~~g~~~~L~~ll~~--~~~~v~~~a~~al~~~~~  546 (552)
                      +.....++..++   ..-...    .     .+... -....+.+.+..++++  .+.++.+++..+++.+..
T Consensus       651 ~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          651 RIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVL-LVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC-------------CCH-HHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchH-HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            334344443333   100000    0     00111 1123456666666643  356899999999988654

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.52  E-value=5.1e-07  Score=83.92  Aligned_cols=192  Identities=10%  Similarity=0.065  Sum_probs=136.4

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHH-hhcCCchhHHHHHh-hCcHHHHHHhh-cCCCHHHHHHHHHHHHHhcccCC-hHhHH
Q 008827          296 PLVRLLDDTSTAVQVAALGAISN-IVVDFTTRRSTFIR-LGGVKLLVQLS-KSMDSTIRLNALRALRNLIFLAE-DKCKE  371 (552)
Q Consensus       296 ~Lv~lL~~~~~~v~~~a~~aL~n-l~~~~~~~~~~~~~-~g~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~-~~~~~  371 (552)
                      .+...++++++.-|.+|...|.. ++.+.+.....-.+ ...+..|.+.+ ++.+..++..|+.+++.++.+.. +....
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            45667789999999999999999 87543321100000 14567778888 78999999999999999986443 22221


Q ss_pred             HHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHH-HhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhc
Q 008827          372 EIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI-FAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVA  450 (552)
Q Consensus       372 ~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la  450 (552)
                       -.....++.++..+.+..+.|+..+..++..++...++...+- ++   .+++.+...|++ +++.++..++..|..++
T Consensus       100 -~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~---~ll~~l~~~l~~-k~~~vk~~al~~l~~~~  174 (249)
T 2qk1_A          100 -DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE---DMLKDILEHMKH-KTPQIRMECTQLFNASM  174 (249)
T ss_dssp             -HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH---HHHHHHHHHTTC-SSHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH---HHHHHHHHHHcC-CChHHHHHHHHHHHHHH
Confidence             1122368889999999999999999999988886432100000 00   167777788887 79999999999999988


Q ss_pred             CCChh---hHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          451 TGKES---HKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       451 ~~~~~---~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                      .....   .....+.       ..++|.|.+++.++++.+|.+|..+++.++
T Consensus       175 ~~~~~~~~~l~~~l~-------~~iip~l~~~l~D~~~~VR~aA~~~l~~i~  219 (249)
T 2qk1_A          175 KEEKDGYSTLQRYLK-------DEVVPIVIQIVNDTQPAIRTIGFESFAILI  219 (249)
T ss_dssp             HHCCSCSHHHHHHHT-------TTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHcCCcchhHHHHHH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            64331   1112220       367799999999999999999999999887

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.49  E-value=5.3e-05  Score=85.16  Aligned_cols=473  Identities=12%  Similarity=0.086  Sum_probs=247.1

Q ss_pred             ccchHHHHHhhc-CCCCcchHHHHHHHHhhcCC-----hhhHHHHHhcCchHHHHHhhcCCHHHHHHHHHHHHHHhcCCh
Q 008827           35 EENMEFLLSLLN-NESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNP  108 (552)
Q Consensus        35 ~~~i~~l~~ll~-~~~~~~~~~a~~~l~~~~~~-----~~~~~~l~~~g~i~~L~~lL~~~~~v~~~al~~L~~l~~~~~  108 (552)
                      ++....+..+|. +.+..+|..|+.+|.+..+.     ++....-.+...++.+...-.++..+|.+...++..++...-
T Consensus        38 p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~  117 (971)
T 2x1g_F           38 PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHML  117 (971)
T ss_dssp             THHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcc
Confidence            456667888886 45678999999999986432     222222334444555544433356788888899999875431


Q ss_pred             hhhhhhccccCCccHHHHHHHHhcC------ChhhHHHHHHHHHHHhhh----CCCcch----hhhh--HHhHHHHHHHh
Q 008827          109 EVVSQFVGPDTGRTLSCIIEIVKDR------FARTRLLASLCLIVIRNA----SPCYLQ----DVGI--KTKLINNLLEL  172 (552)
Q Consensus       109 ~~~~~~~~~~~~~~l~~l~~ll~~~------~~~vr~~A~~~L~~l~~~----~~~~~~----~~~~--~~g~i~~Lv~l  172 (552)
                      ..+        .+.++.++..++++      ++..+..+...|..+...    .+...+    +.+.  -..+++.+.++
T Consensus       118 p~W--------p~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~  189 (971)
T 2x1g_F          118 GEW--------PGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERY  189 (971)
T ss_dssp             CC--------------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             ccc--------cHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122        45677888888765      567788888888876641    110000    0110  11234444444


Q ss_pred             cC--CCC-------chhchHHHHHHHhhc--CCHHHHHHHHHhCcHHHHHHhhh--------------cCCCChhhHHHH
Q 008827          173 LD--DPG-------RVGDEASFAFSSLIA--EKEDMQKLAFEVNGVDKLYNHLQ--------------KGSLHPRRFEGI  227 (552)
Q Consensus       173 l~--~~~-------~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~~L~--------------~~~~~~~~~~~a  227 (552)
                      +.  +.+       .++..+..++.....  .-+..    .....++.+.. |.              ....+++.++.|
T Consensus       190 l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a  264 (971)
T 2x1g_F          190 LKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESC  264 (971)
T ss_dssp             HHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHH
T ss_pred             HhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHH
Confidence            43  222       456666666654433  11111    12233455554 31              000236788999


Q ss_pred             HHHHHHhhcCChh-HHHHHHhcccHHHHHH-------hcCCCC---HHHHHHHHHHHHHhhcccccccc---------hh
Q 008827          228 LLALADMCSKLEC-CRSRCLSLQVLKLVVD-------ALAHDS---SDVRSAACMCLRSVSRSIKNLSA---------GS  287 (552)
Q Consensus       228 ~~aL~~l~~~~~~-~~~~~~~~~~l~~lv~-------~L~~~~---~~v~~~a~~~L~~ls~~~~~~~~---------~~  287 (552)
                      +.++..+....+. -+.... ...+|.++.       .+.+++   .......+..+..+.......-.         ..
T Consensus       265 ~~~l~~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  343 (971)
T 2x1g_F          265 LKTMVNIIIQPDCHNYPKTA-FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELS  343 (971)
T ss_dssp             HHHHHHHHHCSGGGGCHHHH-HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHH
T ss_pred             HHHHHHHHcCccccccHHHH-HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence            9999998864221 011111 112333332       224444   36777778877777643211100         00


Q ss_pred             hhccCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCC---------chhHH---HHHhhCcHHHHHHhhcCCC---
Q 008827          288 FMNETIVIPLVRLLDD-----TSTAVQVAALGAISNIVVDF---------TTRRS---TFIRLGGVKLLVQLSKSMD---  347 (552)
Q Consensus       288 ~~~~~~i~~Lv~lL~~-----~~~~v~~~a~~aL~nl~~~~---------~~~~~---~~~~~g~i~~L~~ll~~~~---  347 (552)
                      -.-..+++.++.+..+     .++++...+++....++...         .....   .++ ...++.++..+..++   
T Consensus       344 ~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~l~~~~~~p~~~~  422 (971)
T 2x1g_F          344 ILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLY-AHLTRILVRKSEQPDEKS  422 (971)
T ss_dssp             HHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHH-HHHHHHHHHHTSCCCTTT
T ss_pred             HHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH-HHHHHHHHHHhcCCCccc
Confidence            0011345555555433     46788888988887775411         11111   111 245555555553221   


Q ss_pred             ------------HHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC-----CChhHHHHHHHHHHHhhcCCcc
Q 008827          348 ------------STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-----PEPSVQEQALALVRNLVDGRIN  410 (552)
Q Consensus       348 ------------~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~  410 (552)
                                  ...|..+..++..++...+.    .++. ..++.+.+.+.+     .++..++.++.+++.++.+..+
T Consensus       423 ~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~----~~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~  497 (971)
T 2x1g_F          423 LAKWSSDDLECFRCYRQDISDTFMYCYDVLND----YILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGG  497 (971)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT----HHHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC---
T ss_pred             ccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH----HHHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcCh
Confidence                        13455566666666543221    1111 122333333332     6788999999999999877543


Q ss_pred             hHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHH
Q 008827          411 SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTA  490 (552)
Q Consensus       411 ~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~  490 (552)
                      .....+..   +++.+..+..+.+++.++..++|+++.++.--..+. ..+        ..+++.|+..| +  +.++..
T Consensus       498 ~~~~~l~~---l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l--------~~vl~~l~~~l-~--~~v~~~  562 (971)
T 2x1g_F          498 EEKRQIPR---LMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYI--------PPAINLLVRGL-N--SSMSAQ  562 (971)
T ss_dssp             ---CHHHH---HHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH--------HHHHHHHHHHH-H--SSCHHH
T ss_pred             hhhHHHHH---HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHH--------HHHHHHHHHHh-C--hHHHHH
Confidence            22111111   344332222112478899999999999885111111 122        34556777777 3  789999


Q ss_pred             HHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC--CccHHHHHHHHHHHHhhh
Q 008827          491 AVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP--CLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       491 a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~--~~~v~~~a~~al~~~~~~  547 (552)
                      |++++.+++.    .......... ..++..|.++++.+  ..+.+..+..|+..+...
T Consensus       563 A~~al~~l~~----~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          563 ATLGLKELCR----DCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHHHHHHHH----HCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHH----HHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            9999999994    2222222221 23455666666653  346778888888887653

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.49  E-value=6.3e-05  Score=74.46  Aligned_cols=344  Identities=13%  Similarity=0.077  Sum_probs=189.8

Q ss_pred             CccHHHHHHHHh-cCChhhHHHHHHHHHHHhhhCCC--cchhhhhHH-hHH-HHHHHhcCCCC-chhchHHHHHHHhhcC
Q 008827          120 GRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPC--YLQDVGIKT-KLI-NNLLELLDDPG-RVGDEASFAFSSLIAE  193 (552)
Q Consensus       120 ~~~l~~l~~ll~-~~~~~vr~~A~~~L~~l~~~~~~--~~~~~~~~~-g~i-~~Lv~ll~~~~-~v~~~a~~~L~~l~~~  193 (552)
                      +.+...++.+++ ..+.++.......+..+....+-  .....+... ... +.+-.++..++ -....++.+++.++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            456666777666 45566666666666666665430  000111111 111 12222232222 2344555555555432


Q ss_pred             CHHHHHHHHHhCcHH--HHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcc--cHHHHHHhcCC---------
Q 008827          194 KEDMQKLAFEVNGVD--KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ--VLKLVVDALAH---------  260 (552)
Q Consensus       194 ~~~~~~~~~~~~~i~--~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~--~l~~lv~~L~~---------  260 (552)
                      .+.....  -...+.  .++..|.... ....+..++.+|..+.. .+++|..+.+.+  .+|.++..++.         
T Consensus       156 ~~~~~~~--l~~l~~~~~~~~~L~~~~-~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~  231 (480)
T 1ho8_A          156 GLHNVKL--VEKLLKNNNLINILQNIE-QMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATR  231 (480)
T ss_dssp             TTCCHHH--HHHHHHCHHHHHHHHCTT-CHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred             CCccHhH--HHHHhhhHHHHHHhcccc-CCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccc
Confidence            2211000  001122  3555565531 23445678888888876 578998887654  46776554331         


Q ss_pred             --------CCHHHHHHHHHHHHHhhcccccccchhhhccCcH--HHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchh---
Q 008827          261 --------DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIV--IPLVRLLD-DTSTAVQVAALGAISNIVVDFTTR---  326 (552)
Q Consensus       261 --------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i--~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~---  326 (552)
                              ....+++.++-|++-|+.+. ..... +...++.  +.|+.+++ ...+.+..-+..+|.|+....+..   
T Consensus       232 ~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~-~~~~~-l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~  309 (480)
T 1ho8_A          232 IVATNSNHLGIQLQYHSLLLIWLLTFNP-VFANE-LVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKK  309 (480)
T ss_dssp             -------CCHHHHHHHHHHHHHHHTTSH-HHHHH-HHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred             cccccCCCccHHHHHHHHHHHHHHHcCH-HHHHH-HHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhh
Confidence                    13567899999999999984 34444 5555543  66777787 567889999999999999754211   


Q ss_pred             --HHHHHhhCcHHHHHHhhcC---CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHH
Q 008827          327 --RSTFIRLGGVKLLVQLSKS---MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALV  401 (552)
Q Consensus       327 --~~~~~~~g~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L  401 (552)
                        .+.++..+++ ++++.|..   +|+++..-.-.....|-.        .          ++-+.+    .-+....+.
T Consensus       310 ~~~~~~~~~~~l-~~l~~L~~rk~~Dedl~edl~~L~e~L~~--------~----------~~~lts----fDeY~~El~  366 (480)
T 1ho8_A          310 VIKQLLLLGNAL-PTVQSLSERKYSDEELRQDISNLKEILEN--------E----------YQELTS----FDEYVAELD  366 (480)
T ss_dssp             HHHHHHHHHCHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHH--------H----------HHTCCH----HHHHHHHHH
T ss_pred             HHHHHHHHccch-HHHHHHhhCCCCcHHHHHHHHHHHHHHHH--------H----------HHhccc----HHHHHHHHh
Confidence              2223334454 45554443   355554432221111100        0          000000    001111111


Q ss_pred             HHhhcCCcchHH-HHHhhc--------CchHHHHHHHhcc---------cCchhHHHHHHHHHHhhcCCChhhHHHHHHH
Q 008827          402 RNLVDGRINSVE-YIFAED--------GIILDAVGRQLRI---------ASKAEIEIQGMYVLGNVATGKESHKEAVMDQ  463 (552)
Q Consensus       402 ~~l~~~~~~~~~-~i~~~~--------~~~~~~l~~~L~~---------~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~  463 (552)
                      .......|.+.. ..+.+.        ..++..|..+|.+         +.++.+..-||+-|+.++...|..+. ++++
T Consensus       367 sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~-i~~~  445 (480)
T 1ho8_A          367 SKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESID-VLDK  445 (480)
T ss_dssp             HTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHH-HHHH
T ss_pred             cCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhH-HHHH
Confidence            111112222211 222221        1277888888874         35788899999999999987775554 5553


Q ss_pred             hhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          464 LLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       464 ~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                            -|+-..+++++.++|++||.+|..|+..+.
T Consensus       446 ------lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          446 ------TGGKADIMELLNHSDSRVKYEALKATQAII  475 (480)
T ss_dssp             ------HSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             ------cCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                  788899999999999999999999998775

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.49  E-value=3.5e-08  Score=82.07  Aligned_cols=122  Identities=12%  Similarity=0.084  Sum_probs=91.3

Q ss_pred             hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcch
Q 008827          332 RLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS  411 (552)
Q Consensus       332 ~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  411 (552)
                      ....++.+..+++++++.+|..|+++|+++..  .           .++.|.+++.++++.++..++++|+++..  +. 
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~-----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~~-   73 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD--E-----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--ER-   73 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSCSS--T-----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--HH-
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h-----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--HH-
Confidence            34678889999999999999999999887632  1           25788899999999999999999998853  11 


Q ss_pred             HHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHH
Q 008827          412 VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAA  491 (552)
Q Consensus       412 ~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a  491 (552)
                                .++.|...|.+ +++.|+..++++|+++..                  ...++.|..+++++++.+|..|
T Consensus        74 ----------a~~~L~~~L~d-~~~~VR~~A~~aL~~~~~------------------~~a~~~L~~~l~d~~~~vr~~A  124 (131)
T 1te4_A           74 ----------AVEPLIKLLED-DSGFVRSGAARSLEQIGG------------------ERVRAAMEKLAETGTGFARKVA  124 (131)
T ss_dssp             ----------HHHHHHHHHHH-CCTHHHHHHHHHHHHHCS------------------HHHHHHHHHHTTSCCTHHHHHH
T ss_pred             ----------HHHHHHHHHcC-CCHHHHHHHHHHHHHhCc------------------HHHHHHHHHHHhCCCHHHHHHH
Confidence                      56777778877 899999999999998852                  2335788899999999999999


Q ss_pred             HHHHHhh
Q 008827          492 VWAVLNL  498 (552)
Q Consensus       492 ~~~l~~l  498 (552)
                      +++|.++
T Consensus       125 ~~aL~~i  131 (131)
T 1te4_A          125 VNYLETH  131 (131)
T ss_dssp             HHHGGGC
T ss_pred             HHHHHhC
Confidence            9998754

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.41  E-value=0.00021  Score=80.28  Aligned_cols=466  Identities=13%  Similarity=0.111  Sum_probs=242.4

Q ss_pred             ccchHHHHHhhc-CCCCcchHHHHHHHHhhcCC-----hhhHHHHHhcCchHHHHHhhcCCHHHHHHHHHHHHHHhcC-C
Q 008827           35 EENMEFLLSLLN-NESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKN-N  107 (552)
Q Consensus        35 ~~~i~~l~~ll~-~~~~~~~~~a~~~l~~~~~~-----~~~~~~l~~~g~i~~L~~lL~~~~~v~~~al~~L~~l~~~-~  107 (552)
                      ++..+.+..+|. +.+..+|..|+.+|.+..+.     ++......+...++.+...-.++..+|.+...++..++.. .
T Consensus        56 p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~  135 (963)
T 2x19_B           56 PQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMM  135 (963)
T ss_dssp             TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC
Confidence            456677888886 45677999999999986432     1222222333344444442212567888888899888754 2


Q ss_pred             hhhhhhhccccCCccHHHHHHHHhc-----CChhhHHHHHHHHHHHhhhC-CCcc--------hhhhh--HHhHHHHHHH
Q 008827          108 PEVVSQFVGPDTGRTLSCIIEIVKD-----RFARTRLLASLCLIVIRNAS-PCYL--------QDVGI--KTKLINNLLE  171 (552)
Q Consensus       108 ~~~~~~~~~~~~~~~l~~l~~ll~~-----~~~~vr~~A~~~L~~l~~~~-~~~~--------~~~~~--~~g~i~~Lv~  171 (552)
                      ++.+        .+.++.++.++++     +++..+..+...|..+.... ....        .+.+.  -..+++.+..
T Consensus       136 p~~W--------p~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~  207 (963)
T 2x19_B          136 PDAW--------PCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQ  207 (963)
T ss_dssp             TTTS--------TTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHH
T ss_pred             cccc--------chHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333        4677888888876     35667788888888776421 0000        00011  1234555555


Q ss_pred             hcCCCC---chhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCCh--hHHHH--
Q 008827          172 LLDDPG---RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE--CCRSR--  244 (552)
Q Consensus       172 ll~~~~---~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~--~~~~~--  244 (552)
                      ++.+..   .+...+..++.....-....   ......++.+++.+.    +++.++.++.++..+....+  .....  
T Consensus       208 ~l~~~~~~~~~~~~~l~~l~~wi~~~~~~---~~~~~ll~~l~~~l~----~~~~~~~a~~~l~~i~~~~~~~~~~~~~~  280 (963)
T 2x19_B          208 LLQQPSSPSCVRQKVLKCFSSWVQLEVPL---QDCEALIQAAFAALQ----DSELFDSSVEAIVNAISQPDAQRYVNTLL  280 (963)
T ss_dssp             HHSCTTCCHHHHHHHHHHHHHHHTSSCCG---GGTHHHHHHHHHHTT----STTTHHHHHHHHHHHHTCTTGGGCHHHHH
T ss_pred             HHhCCCCchHHHHHHHHHHHHHHcCCCCc---ccchHHHHHHHHHhC----CchHHHHHHHHHHHHHcccccccCHHHHH
Confidence            565321   24455555554322111000   001233555666553    25688999999999876422  11111  


Q ss_pred             -HHh--cccHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc------chhhhccCcHHHHHHhhcC-----CCHHHHH
Q 008827          245 -CLS--LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS------AGSFMNETIVIPLVRLLDD-----TSTAVQV  310 (552)
Q Consensus       245 -~~~--~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~------~~~~~~~~~i~~Lv~lL~~-----~~~~v~~  310 (552)
                       +..  .+..+.+...+..++.......+.++..+.......-      ..  .-..+++.++.+..+     .+.++..
T Consensus       281 ~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~--~~~~~l~~ll~~~~~~~~~~~~~~v~~  358 (963)
T 2x19_B          281 KLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQ--SFLALVNMIMFCTGIPGHYPVNETTSS  358 (963)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH--HHHHHHHHHHHHHTCSSCTTTTCGGGG
T ss_pred             HHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchH--HHHHHHHHHHHHHcCCCCCCchhhhhh
Confidence             111  1122223333344555666667777777654311100      00  011445555555554     3455666


Q ss_pred             HHHHHHHHhhcCC--------chhHHHHHh--hCcHHHHHHhhcCCCH---------------HHHHHHHHHHHHhcccC
Q 008827          311 AALGAISNIVVDF--------TTRRSTFIR--LGGVKLLVQLSKSMDS---------------TIRLNALRALRNLIFLA  365 (552)
Q Consensus       311 ~a~~aL~nl~~~~--------~~~~~~~~~--~g~i~~L~~ll~~~~~---------------~v~~~a~~aL~~l~~~~  365 (552)
                      .+......++.+.        +.....+..  ...++.++..+..+++               ..|..+..+|..++...
T Consensus       359 ~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~  438 (963)
T 2x19_B          359 LTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEML  438 (963)
T ss_dssp             GGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            6665555554311        111111100  1344555554443221               12333444444443211


Q ss_pred             ChHhHHHHHHhhcHHHHHhhh----cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHh---cccCchhH
Q 008827          366 EDKCKEEIFMELTASLLASLI----CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL---RIASKAEI  438 (552)
Q Consensus       366 ~~~~~~~i~~~~~~~~l~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L---~~~~~~~v  438 (552)
                      .    ..++ ...++.+.+.+    .+.++..++.++.+++.++.+..+....       .++.+...+   .+ +++.+
T Consensus       439 ~----~~~l-~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~-------~l~~l~~~l~~l~~-~~~~v  505 (963)
T 2x19_B          439 G----AELL-SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSD-------VVPGLIGLIPRISI-SNVQL  505 (963)
T ss_dssp             T----HHHH-HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCS-------HHHHHHHHGGGSCC-CSHHH
T ss_pred             c----HHHH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhH-------HHHHHHHHHHhCCC-CcHHH
Confidence            1    1111 12233444445    5678899999999999998774321111       222333333   22 46789


Q ss_pred             HHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCc
Q 008827          439 EIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGI  518 (552)
Q Consensus       439 ~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~  518 (552)
                      +..++|+++.++.--..+. ..+        ..+++.++..|++  +.++..|++++.+++..    ........ -..+
T Consensus       506 r~~~~~~l~~~~~~l~~~~-~~l--------~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~----~~~~l~p~-~~~i  569 (963)
T 2x19_B          506 ADTVMFTIGALSEWLADHP-VMI--------NSVLPLVLHALGN--PELSVSSVSTLKKICRE----CKYDLPPY-AANI  569 (963)
T ss_dssp             HHHHHHHHHHTHHHHHHCH-HHH--------TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHH----TGGGCTTT-HHHH
T ss_pred             HHHHHHHHHHHHHHHHhCH-HHH--------HHHHHHHHHHhCC--chHHHHHHHHHHHHHHH----HHHHHHhh-HHHH
Confidence            9999999999875211111 222        4677888888864  88999999999999841    11111010 0123


Q ss_pred             HHHHHhhhcCC--CccHHHHHHHHHHHHhh
Q 008827          519 VSHVKNMVNDP--CLDVKLRVKTALEQFNS  546 (552)
Q Consensus       519 ~~~L~~ll~~~--~~~v~~~a~~al~~~~~  546 (552)
                      +..|.+++..+  ..+.+..+..|+..+..
T Consensus       570 l~~l~~~l~~~~~~~~~~~~~~eai~~i~~  599 (963)
T 2x19_B          570 VAVSQDVLMKQIHKTSQCMWLMQALGFLLS  599 (963)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence            44455555432  34677778888887764

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.40  E-value=0.002  Score=72.91  Aligned_cols=431  Identities=11%  Similarity=0.038  Sum_probs=228.2

Q ss_pred             ccchHHHHHhhc-CCCCcchHHHHHHHHhhcCC------hhhHHHHHhcCchHHHHHhhcC------CHHHHHHHHHHHH
Q 008827           35 EENMEFLLSLLN-NESENVSGLGASIISHSCKT------SLEQKLLFDAGVLKRLTSLLGG------SLIQRDASLESIA  101 (552)
Q Consensus        35 ~~~i~~l~~ll~-~~~~~~~~~a~~~l~~~~~~------~~~~~~l~~~g~i~~L~~lL~~------~~~v~~~al~~L~  101 (552)
                      ++....+..+|. +.+..+|..|+.+|.+..+.      .+.|.. .+...++.+...-.+      +..++.+...++.
T Consensus        47 p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~-ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia  125 (1049)
T 3m1i_C           47 PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIG-IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV  125 (1049)
T ss_dssp             TTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHH-HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHH-HHHHHHHHHHhhCCccccchhhHHHHHHHHHHHH
Confidence            345566667775 45678999999999986432      122322 233333333322211      2467777778888


Q ss_pred             HHhcC-ChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCC----Cc-c--h-----hhhhH--HhHH
Q 008827          102 TIFKN-NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASP----CY-L--Q-----DVGIK--TKLI  166 (552)
Q Consensus       102 ~l~~~-~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~----~~-~--~-----~~~~~--~g~i  166 (552)
                      .++.. .++.+        .+.++.++..++ .++..+..+..+|..+...-.    .. .  +     +.+..  ..++
T Consensus       126 ~Ia~~~~p~~W--------p~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~  196 (1049)
T 3m1i_C          126 QILKQEWPQNW--------PEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIF  196 (1049)
T ss_dssp             HHHHHHTTTTC--------TTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccc--------hHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence            87754 23333        467788888886 555667777777777663211    00 0  0     11111  1233


Q ss_pred             HHHHHhcCC--CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCC--hh--
Q 008827          167 NNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL--EC--  240 (552)
Q Consensus       167 ~~Lv~ll~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~--~~--  240 (552)
                      +.+..++.+  +..++..+..++......-+.  ..+.+...++.+++.+..   ++.++..++.+|..+....  +.  
T Consensus       197 ~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~~~~l~---~~~~~~~a~~~L~~i~~~~~~~~~~  271 (1049)
T 3m1i_C          197 KLCFQVLEQGSSSSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDND  271 (1049)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHHCCCCTTCH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHHHHhCC---CHhHHHHHHHHHHHHHhCCCCcchh
Confidence            344444442  345677777887765543321  123445556666643332   3778999999999887641  21  


Q ss_pred             -HHHHHHh--cccHHHHHH-h-------------cCCCCHHHHHHHHHHHHHhhcccccc------cchhhhccCcHHHH
Q 008827          241 -CRSRCLS--LQVLKLVVD-A-------------LAHDSSDVRSAACMCLRSVSRSIKNL------SAGSFMNETIVIPL  297 (552)
Q Consensus       241 -~~~~~~~--~~~l~~lv~-~-------------L~~~~~~v~~~a~~~L~~ls~~~~~~------~~~~~~~~~~i~~L  297 (552)
                       ....+..  .+.+..+.. +             -.+.+.+.....+..+..+.......      ... . -..+++.+
T Consensus       272 ~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-l~~~l~~l  349 (1049)
T 3m1i_C          272 LIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRE-L-LLNAHQYL  349 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH-H-HHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHH-H-HHHHHHHH
Confidence             1111111  122222211 1             12234455556666665543321100      001 0 12356666


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhhc----CCc--hhHHHHHhhCcHHHHHHhhcCC-------------------CH---H
Q 008827          298 VRLLDDTSTAVQVAALGAISNIVV----DFT--TRRSTFIRLGGVKLLVQLSKSM-------------------DS---T  349 (552)
Q Consensus       298 v~lL~~~~~~v~~~a~~aL~nl~~----~~~--~~~~~~~~~g~i~~L~~ll~~~-------------------~~---~  349 (552)
                      +.....++.++...|......++.    ...  .....++ ...++.++..+..+                   +.   .
T Consensus       350 l~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~  428 (1049)
T 3m1i_C          350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQ  428 (1049)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHH
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHH
Confidence            666677788898888877777664    111  1111111 13445555444221                   11   2


Q ss_pred             HHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc--CCChhHHHHHHHHHHHhhcCCcchHH-HHHhhcCchHHHH
Q 008827          350 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDGRINSVE-YIFAEDGIILDAV  426 (552)
Q Consensus       350 v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~-~i~~~~~~~~~~l  426 (552)
                      .+..+..+|..++.-. +   ..++ ....+.+.+.+.  +.++..++.++++++.++.......+ ..+..   +++.+
T Consensus       429 ~~~~~~~~L~~l~~~~-~---~~~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~---v~~~l  500 (1049)
T 3m1i_C          429 LYKSEREVLVYLTHLN-V---IDTE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVT---VIKDL  500 (1049)
T ss_dssp             HHHHHHHHHHHHHHHC-H---HHHH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH---HHHHH
T ss_pred             HHHHHHHHHHHHHccC-H---HHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHH---HHHHH
Confidence            2334444555554311 1   1111 123344445554  46788999999999999865432211 11111   45555


Q ss_pred             HHHhcc----cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          427 GRQLRI----ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       427 ~~~L~~----~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      ..+...    .+++-++..++|+++.++.-...+- ..+        ..+++.++..+.++++.++..|++++.+++.
T Consensus       501 ~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l--------~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~  569 (1049)
T 3m1i_C          501 LDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFL--------RTVILKLFEFMHETHEGVQDMACDTFIKIVQ  569 (1049)
T ss_dssp             HHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHH--------HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            543321    1344555568999998774211111 122        3566788888998899999999999999994

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.32  E-value=0.00041  Score=77.90  Aligned_cols=451  Identities=9%  Similarity=0.008  Sum_probs=233.6

Q ss_pred             hcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhccccCCcc
Q 008827           45 LNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRT  122 (552)
Q Consensus        45 l~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~  122 (552)
                      ..+++...+..|-..|.+.-+.         -++...+..+|.+  +..+|..|+..|.+....+   +..+-. .+...
T Consensus        34 ~~~~~~~~r~~A~~~L~~~~~~---------p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~---w~~l~~-~~~~~  100 (963)
T 2x19_B           34 YYDPNIENKNLAQKWLMQAQVS---------PQAWHFSWQLLQPDKVPEIQYFGASALHIKISRY---WSDIPT-DQYES  100 (963)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHS---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHC---GGGSCG-GGHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHhcC---------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhC---HHhCCH-HHHHH
Confidence            3356666777777777665433         2455667777764  5689999999998866432   111100 01111


Q ss_pred             H-HHHHHHHhc---CChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC------CCchhchHHHHHHHhhc
Q 008827          123 L-SCIIEIVKD---RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD------PGRVGDEASFAFSSLIA  192 (552)
Q Consensus       123 l-~~l~~ll~~---~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~------~~~v~~~a~~~L~~l~~  192 (552)
                      + ..++..+.+   .++.+|...+.++..++...--     ..+.+.++.|+++++.      +......+...|..+..
T Consensus       101 ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p-----~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~e  175 (963)
T 2x19_B          101 LKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP-----DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPE  175 (963)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT-----TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc-----cccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHH
Confidence            2 234444332   4688999999999999875311     1145788999998874      22244555666665553


Q ss_pred             CC-----HHHHHHHHH---hCcHHHH----HHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC
Q 008827          193 EK-----EDMQKLAFE---VNGVDKL----YNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH  260 (552)
Q Consensus       193 ~~-----~~~~~~~~~---~~~i~~L----~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~  260 (552)
                      +-     +..++....   ...++.+    ..++.....+..++..++.++.....-+...   ......++.+.+.+. 
T Consensus       176 e~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~---~~~~~ll~~l~~~l~-  251 (963)
T 2x19_B          176 EFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPL---QDCEALIQAAFAALQ-  251 (963)
T ss_dssp             HHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCG---GGTHHHHHHHHHHTT-
T ss_pred             HHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCc---ccchHHHHHHHHHhC-
Confidence            10     101111111   1223333    3444443222246777777775543211110   012346777777774 


Q ss_pred             CCHHHHHHHHHHHHHhhcccccc-cchhhhccCcHHHHHH-------hhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008827          261 DSSDVRSAACMCLRSVSRSIKNL-SAGSFMNETIVIPLVR-------LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR  332 (552)
Q Consensus       261 ~~~~v~~~a~~~L~~ls~~~~~~-~~~~~~~~~~i~~Lv~-------lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~  332 (552)
                       +++++..|+.++..+....... ... . -...++.++.       .+...|.+.....+..+..+......   .+.+
T Consensus       252 -~~~~~~~a~~~l~~i~~~~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~---~l~~  325 (963)
T 2x19_B          252 -DSELFDSSVEAIVNAISQPDAQRYVN-T-LLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSR---ALLD  325 (963)
T ss_dssp             -STTTHHHHHHHHHHHHTCTTGGGCHH-H-HHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred             -CchHHHHHHHHHHHHHcccccccCHH-H-HHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHH---HHHc
Confidence             6789999999999986542111 111 1 1112222222       22344556656666666655432111   1110


Q ss_pred             --------hCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhcccC---C----hHhHH---HHHHhhcHHHHHhhhcCC
Q 008827          333 --------LGGVKLLVQLSKS-----MDSTIRLNALRALRNLIFLA---E----DKCKE---EIFMELTASLLASLICDP  389 (552)
Q Consensus       333 --------~g~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~---~----~~~~~---~i~~~~~~~~l~~ll~~~  389 (552)
                              ...++.++.....     .++.+...++.....++...   +    +..+.   ..+. ..++.++..+..+
T Consensus       326 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~ll~~~~~p  404 (963)
T 2x19_B          326 QVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYF-QLVDVLLHKAQFP  404 (963)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH-HHHHHHHHHHSCC
T ss_pred             CccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHcCC
Confidence                    1345555555553     34556666666555554311   0    11111   1111 1234444444322


Q ss_pred             Chh---------------HHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhc---ccCchhHHHHHHHHHHhhcC
Q 008827          390 EPS---------------VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLR---IASKAEIEIQGMYVLGNVAT  451 (552)
Q Consensus       390 ~~~---------------v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~---~~~~~~v~~~a~~~L~~la~  451 (552)
                      +.+               .+..+..+|..++...++   .++..   +++.+...++   ++.++..++.++++++.++.
T Consensus       405 ~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~---~~l~~---~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~  478 (963)
T 2x19_B          405 SDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGA---ELLSN---LYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAE  478 (963)
T ss_dssp             CHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTH---HHHHH---HHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTT
T ss_pred             CcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccH---HHHHH---HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHh
Confidence            211               122333444444321110   11110   3445555552   22678899999999999998


Q ss_pred             CChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCc
Q 008827          452 GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCL  531 (552)
Q Consensus       452 ~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~  531 (552)
                      +........+.        .+++.+.. +.++++.+|..++|+++.++.    -.....+.  -..+++.|.+.+.+  +
T Consensus       479 ~~~~~~~~~l~--------~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~----~l~~~~~~--l~~vl~~l~~~l~~--~  541 (963)
T 2x19_B          479 TIDVNYSDVVP--------GLIGLIPR-ISISNVQLADTVMFTIGALSE----WLADHPVM--INSVLPLVLHALGN--P  541 (963)
T ss_dssp             SCCSSCCSHHH--------HHHHHGGG-SCCCSHHHHHHHHHHHHHTHH----HHHHCHHH--HTTTHHHHHHHTTC--G
T ss_pred             hcCchhhHHHH--------HHHHHHHh-CCCCcHHHHHHHHHHHHHHHH----HHHhCHHH--HHHHHHHHHHHhCC--c
Confidence            65421111221        22232222 234678899999999999983    01111122  24667888887764  8


Q ss_pred             cHHHHHHHHHHHHhhh
Q 008827          532 DVKLRVKTALEQFNSF  547 (552)
Q Consensus       532 ~v~~~a~~al~~~~~~  547 (552)
                      .|+..|..|+.++.+.
T Consensus       542 ~V~~~A~~al~~l~~~  557 (963)
T 2x19_B          542 ELSVSSVSTLKKICRE  557 (963)
T ss_dssp             GGHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9999999999998764

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.28  E-value=0.01  Score=66.17  Aligned_cols=465  Identities=11%  Similarity=0.058  Sum_probs=241.1

Q ss_pred             ccchHHHHHhhc-CCCCcchHHHHHHHHhhcCC-----hhhHHHHHhcCchHHHHHhhcC------CHHHHHHHHHHHHH
Q 008827           35 EENMEFLLSLLN-NESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLGG------SLIQRDASLESIAT  102 (552)
Q Consensus        35 ~~~i~~l~~ll~-~~~~~~~~~a~~~l~~~~~~-----~~~~~~l~~~g~i~~L~~lL~~------~~~v~~~al~~L~~  102 (552)
                      ++.......+|. +.++.++..|+.+|.+..+.     +.......+...++.+...-.+      +.-++.+...++..
T Consensus        47 p~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~  126 (1023)
T 4hat_C           47 PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQ  126 (1023)
T ss_dssp             TTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHH
Confidence            345556666765 45788999999999886542     2222233344445544443322      23455556677777


Q ss_pred             HhcC-ChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhh----CCCc---c-----hhhhhH--HhHHH
Q 008827          103 IFKN-NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNA----SPCY---L-----QDVGIK--TKLIN  167 (552)
Q Consensus       103 l~~~-~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~----~~~~---~-----~~~~~~--~g~i~  167 (552)
                      ++.. .+..+        .+.++.++.+++++ +.........|..+...    ....   .     ++.+..  ..+++
T Consensus       127 I~~~~~p~~W--------p~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~  197 (1023)
T 4hat_C          127 ILKQEWPQNW--------PEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFK  197 (1023)
T ss_dssp             HHHHHTTTTC--------TTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhChhhc--------hHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence            7643 23333        45678888887653 34455566666655442    1010   0     011111  12344


Q ss_pred             HHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHH-HhhhcCCCChhhHHHHHHHHHHhhcCC---h--
Q 008827          168 NLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLY-NHLQKGSLHPRRFEGILLALADMCSKL---E--  239 (552)
Q Consensus       168 ~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~~L~~~~~~~~~~~~a~~aL~~l~~~~---~--  239 (552)
                      .+.+++.  .++++...+..++....+.-+-  ..+++.+.++.++ .+|..    +..+..|+.+|..+...+   +  
T Consensus       198 ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i--~~i~~~~ll~~l~~~~L~~----~~~r~~A~ecL~eIv~~~~~~~~~  271 (1023)
T 4hat_C          198 LCFQVLEQGASSSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFMTS----PDTRAITLKCLTEVSNLKIPQDND  271 (1023)
T ss_dssp             HHHHHHHHCSSCHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHHHS----HHHHHHHHHHHHHHHTSCCCSSCH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHhCCH--HHhcchhHHHHHHHHHcCC----HHHHHHHHHHHHHHHccccCCchH
Confidence            4444443  3345666677777766654221  3456677788888 76653    668999999999988632   2  


Q ss_pred             hHHHHHHh--cccHHHH--------------HHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhc----cCcHH----
Q 008827          240 CCRSRCLS--LQVLKLV--------------VDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMN----ETIVI----  295 (552)
Q Consensus       240 ~~~~~~~~--~~~l~~l--------------v~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~----~~~i~----  295 (552)
                      .+...+..  .+.++.+              ...-.+.+.+....-+..+..+.......    +..    .+.+.    
T Consensus       272 ~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~l----i~~~~~~~~~l~~~l~  347 (1023)
T 4hat_C          272 LIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRAL----LESDESLRELLLNAHQ  347 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGG----GTSCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHH----HhCCcchhHHHHHHHH
Confidence            12211111  0111111              11112234566666777776665542211    111    11222    


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcC---CchhH---HHHHhhCcHHHHHHhhcCCC---------------------H
Q 008827          296 PLVRLLDDTSTAVQVAALGAISNIVVD---FTTRR---STFIRLGGVKLLVQLSKSMD---------------------S  348 (552)
Q Consensus       296 ~Lv~lL~~~~~~v~~~a~~aL~nl~~~---~~~~~---~~~~~~g~i~~L~~ll~~~~---------------------~  348 (552)
                      .|+..-..++.++-..+...=..++.+   .+..+   ..+. ...++.+++-+..+.                     .
T Consensus       348 ~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~-~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~  426 (1023)
T 4hat_C          348 YLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDT  426 (1023)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHH-HHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGG
T ss_pred             HHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH-HHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHH
Confidence            333333456777766665433333321   00011   0111 135555555554432                     0


Q ss_pred             -----HHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC--CChhHHHHHHHHHHHhhcCCcch-HHHHHhhcC
Q 008827          349 -----TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD--PEPSVQEQALALVRNLVDGRINS-VEYIFAEDG  420 (552)
Q Consensus       349 -----~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~  420 (552)
                           ..| ..+..+.++..   +    ..+ ...++.+.+.+.+  .++...+.++++++.++.+-.+. ....+..  
T Consensus       427 ~~~f~~~R-d~L~~l~~l~~---~----~~~-~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~--  495 (1023)
T 4hat_C          427 IQLYKSER-EVLVYLTHLNV---I----DTE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVT--  495 (1023)
T ss_dssp             HHHHHHHH-HHHHHHHHHCH---H----HHH-HHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--
T ss_pred             HHHHHHHH-HHHHHHhccCH---H----HHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHH--
Confidence                 111 22222222211   1    111 1123333334443  68999999999999999775432 2222222  


Q ss_pred             chHHHHHHHhcc----cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHH
Q 008827          421 IILDAVGRQLRI----ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVL  496 (552)
Q Consensus       421 ~~~~~l~~~L~~----~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~  496 (552)
                       +++.|..++.+    .++..++..++|+++.++.--..+- ..+        ..++..|...+.++++.++..|++++.
T Consensus       496 -vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~-~~L--------~~vl~~L~~~l~~~~~~v~~~A~~al~  565 (1023)
T 4hat_C          496 -VIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFL--------RTVILKLFEFMHETHEGVQDMACDTFI  565 (1023)
T ss_dssp             -HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCH-HHH--------HHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             -HHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccH-HHH--------HHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence             67777777653    1234456678899998765111111 122        355667788888888999999999999


Q ss_pred             hhcCCCCCCCHHHHHHHHH------CCcHHHHH----hhhcCCCccHHHHHHHHHHHHhhh
Q 008827          497 NLTCSSSPGSSGRLVKLHD------AGIVSHVK----NMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       497 ~l~~~~~~~~~~~~~~l~~------~g~~~~L~----~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      +++.       +....+..      .-.++.++    +...+-.......+..|+..+.+.
T Consensus       566 ~l~~-------~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~  619 (1023)
T 4hat_C          566 KIVQ-------KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE  619 (1023)
T ss_dssp             HHHH-------HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHH-------HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            9994       12223321      11233333    333333445556777777777654

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.28  E-value=0.00072  Score=76.49  Aligned_cols=455  Identities=11%  Similarity=0.075  Sum_probs=238.0

Q ss_pred             CCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccH-
Q 008827           47 NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTL-  123 (552)
Q Consensus        47 ~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l-  123 (552)
                      +++...+..|-..|....+.         -+....+..+|.+  +..+|..|+..|.+....+   +..+-. .....+ 
T Consensus        27 ~p~~~~r~~Ae~~L~~~~~~---------p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~---W~~l~~-~~~~~ir   93 (1049)
T 3m1i_C           27 QGSGVQQKQAQEILTKFQDN---------PDAWQKADQILQFSTNPQSKFIALSILDKLITRK---WKLLPN-DHRIGIR   93 (1049)
T ss_dssp             HCCHHHHHHHHHHHHHHHHS---------TTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHT---GGGSCH-HHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHhC---------chHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhh---CccCCH-HHHHHHH
Confidence            45555666666666655432         2455566666753  5689999999998865321   111100 001111 


Q ss_pred             HHHHHHHhc----C-----ChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchHHHHHHHhhcCC
Q 008827          124 SCIIEIVKD----R-----FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEK  194 (552)
Q Consensus       124 ~~l~~ll~~----~-----~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~  194 (552)
                      ..++..+.+    +     ++.+|...+.++..++...-.     ..+.+.++.|+++++.++..+..+..+|..+..+-
T Consensus        94 ~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-----~~Wp~ll~~L~~~~~~~~~~~~~~l~~L~~l~eev  168 (1049)
T 3m1i_C           94 NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-----QNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEV  168 (1049)
T ss_dssp             HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-----TTCTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-----ccchHHHHHHHHHHccChHHHHHHHHHHHHHHHHH
Confidence            223443332    1     467888889999998875311     12457889999998743334445555665554221


Q ss_pred             H--------HHH-----HHHHH--hCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHH-hc
Q 008827          195 E--------DMQ-----KLAFE--VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD-AL  258 (552)
Q Consensus       195 ~--------~~~-----~~~~~--~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~-~L  258 (552)
                      .        ..+     ..+.+  ...++.+...+... .++.++..++.++.+....-+.  ..+.+...++.+.+ ++
T Consensus       169 ~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~-~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~~~~l  245 (1049)
T 3m1i_C          169 FDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG-SSSSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFM  245 (1049)
T ss_dssp             HTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHH
T ss_pred             HHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHHHHhC
Confidence            0        000     11111  11123334455544 3467888999999876553321  22455667777663 33


Q ss_pred             CCCCHHHHHHHHHHHHHhhccc-ccc--c-chhhhc--cCcHHHHHH-hh-------------cCCCHHHHHHHHHHHHH
Q 008827          259 AHDSSDVRSAACMCLRSVSRSI-KNL--S-AGSFMN--ETIVIPLVR-LL-------------DDTSTAVQVAALGAISN  318 (552)
Q Consensus       259 ~~~~~~v~~~a~~~L~~ls~~~-~~~--~-~~~~~~--~~~i~~Lv~-lL-------------~~~~~~v~~~a~~aL~n  318 (552)
                        .+++++..|+.+|..+.... +..  + ..++..  .+++..+.. ++             .+.+.+.....+..+..
T Consensus       246 --~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~  323 (1049)
T 3m1i_C          246 --TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTT  323 (1049)
T ss_dssp             --HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred             --CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHH
Confidence              37899999999999886541 111  0 000000  112222211 11             12344544444444443


Q ss_pred             hhcC-------CchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc----cCC-hHhHHHHHHhhcHHHHHhhh
Q 008827          319 IVVD-------FTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF----LAE-DKCKEEIFMELTASLLASLI  386 (552)
Q Consensus       319 l~~~-------~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~----~~~-~~~~~~i~~~~~~~~l~~ll  386 (552)
                      +...       .+..+..+  ...++.++.....++..+...++.....++.    ... ...-..++.. .++.++..+
T Consensus       324 ~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~-Lv~~ll~~m  400 (1049)
T 3m1i_C          324 YLARNRALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQ-LRLVIIENM  400 (1049)
T ss_dssp             HHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHH-HHHHHHHTC
T ss_pred             HHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH-HHHHHHHhc
Confidence            3221       11111111  2456666666677788888888877777654    111 1111122222 234444444


Q ss_pred             cCC-------------------Ch---hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-cCchhHHHHHH
Q 008827          387 CDP-------------------EP---SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-ASKAEIEIQGM  443 (552)
Q Consensus       387 ~~~-------------------~~---~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~-~~~~~v~~~a~  443 (552)
                      .-+                   +.   .....+..+|..++.-.++   .++..   +++.+.+.+.+ +.++..++.++
T Consensus       401 ~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~---~~l~~---v~~~l~~~l~~~~~~W~~~eaal  474 (1049)
T 3m1i_C          401 VRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI---DTEEI---MISKLARQIDGSEWSWHNINTLS  474 (1049)
T ss_dssp             CCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHH---HHHHH---HHHHHHHHHTSSSCCHHHHHHHH
T ss_pred             CCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHH---HHHHH---HHHHHHHHhCCCCCCHHHHHHHH
Confidence            211                   10   1222344555555532221   11111   34555555543 35788999999


Q ss_pred             HHHHhhcCCChhhHH-HHHHHhhHhhhhhhHHHHHHhhcC-----CChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCC
Q 008827          444 YVLGNVATGKESHKE-AVMDQLLLRAENKAQSCIIKFLQS-----NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAG  517 (552)
Q Consensus       444 ~~L~~la~~~~~~~~-~i~~~~~~~~~~~~v~~Lv~lL~~-----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g  517 (552)
                      ++++.++.+...... .++        ..+++.+..+...     +.+.++..++|+++.++.    -...+.+.+  ..
T Consensus       475 ~algsia~~~~~~~e~~~l--------~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~----~~~~~~~~l--~~  540 (1049)
T 3m1i_C          475 WAIGSISGTMSEDTEKRFV--------VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPR----FLKAHWNFL--RT  540 (1049)
T ss_dssp             HHHHHTTTSSCHHHHHHHH--------HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHH----HHHHCHHHH--HH
T ss_pred             HHHHHHhcccCchhhHHHH--------HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHH----HHHhHHHHH--HH
Confidence            999999865432211 222        2344555554332     344566679999998873    001111222  13


Q ss_pred             cHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          518 IVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       518 ~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      +++.|.+.+.++++.|+..|+.|+.+|.+.
T Consensus       541 vl~~ll~~l~~~~~~V~~~A~~al~~l~~~  570 (1049)
T 3m1i_C          541 VILKLFEFMHETHEGVQDMACDTFIKIVQK  570 (1049)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            466677777888899999999999998864

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.21  E-value=0.0003  Score=69.61  Aligned_cols=320  Identities=15%  Similarity=0.147  Sum_probs=191.6

Q ss_pred             cccchHHHHHhhcC-CCCcchHHHHHHHHhhcCChh---hHHHH-HhcCch-HHHHH-hhcCC-HHHHHHHHHHHHHHhc
Q 008827           34 QEENMEFLLSLLNN-ESENVSGLGASIISHSCKTSL---EQKLL-FDAGVL-KRLTS-LLGGS-LIQRDASLESIATIFK  105 (552)
Q Consensus        34 ~~~~i~~l~~ll~~-~~~~~~~~a~~~l~~~~~~~~---~~~~l-~~~g~i-~~L~~-lL~~~-~~v~~~al~~L~~l~~  105 (552)
                      +......++.+|+. ..+++.+++...+..+...+.   .+..+ .+.... ..+.. .+..+ .-....+..++..++.
T Consensus        75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~  154 (480)
T 1ho8_A           75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ  154 (480)
T ss_dssp             SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred             CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence            45567889999984 557788888888888766554   34333 333222 11222 22233 3455666666666653


Q ss_pred             CChhhhhhhccccCCccHH--HHHHHHhc-CChhhHHHHHHHHHHHhhhCCCcchhhhhHH--hHHHHHHHhcC---C--
Q 008827          106 NNPEVVSQFVGPDTGRTLS--CIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKT--KLINNLLELLD---D--  175 (552)
Q Consensus       106 ~~~~~~~~~~~~~~~~~l~--~l~~ll~~-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~--g~i~~Lv~ll~---~--  175 (552)
                      ........+     ...+.  .++..+++ ++...+..++.+|..+.....  .+..+...  +.+|.+++++.   +  
T Consensus       155 ~~~~~~~~l-----~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~--~R~~f~~~~~~~~~~l~~il~~~~~~~  227 (480)
T 1ho8_A          155 NGLHNVKLV-----EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE--YRDVIWLHEKKFMPTLFKILQRATDSQ  227 (480)
T ss_dssp             TTTCCHHHH-----HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH--HHHHHHTTHHHHHHHHHHHHHHHHC--
T ss_pred             cCCccHhHH-----HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh--HHHHHHHcccchhHHHHHHHHHhhccc
Confidence            322211000     11222  34555555 345667889999998877432  23333322  35777765443   0  


Q ss_pred             ---------C----CchhchHHHHHHHhhcCCHHHHHHHHHhCcH--HHHHHhhhcCCCChhhHHHHHHHHHHhhcCCh-
Q 008827          176 ---------P----GRVGDEASFAFSSLIAEKEDMQKLAFEVNGV--DKLYNHLQKGSLHPRRFEGILLALADMCSKLE-  239 (552)
Q Consensus       176 ---------~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~-  239 (552)
                               .    -.++.++..+++-++-..+ ....+...+..  +.|++.++... -.++..-++.+|.|+...++ 
T Consensus       228 ~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~-KEKvvRv~la~l~Nll~~~~~  305 (480)
T 1ho8_A          228 LATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITI-KEKVSRLCISIILQCCSTRVK  305 (480)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHTTSSSST
T ss_pred             cccccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcccch
Confidence                     1    1246788888887775544 33444444433  67777777763 46677778889999987542 


Q ss_pred             ---hH-HHHHHhcccHHHHHHhcCC---CCHHHHHHHHHHHHHhhcccc---------------cccch-----------
Q 008827          240 ---CC-RSRCLSLQVLKLVVDALAH---DSSDVRSAACMCLRSVSRSIK---------------NLSAG-----------  286 (552)
Q Consensus       240 ---~~-~~~~~~~~~l~~lv~~L~~---~~~~v~~~a~~~L~~ls~~~~---------------~~~~~-----------  286 (552)
                         .. ...++..++ +.+++.|..   .++++....-.....|.....               .+++.           
T Consensus       306 ~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~E  384 (480)
T 1ho8_A          306 QHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSD  384 (480)
T ss_dssp             THHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHH
T ss_pred             hhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHH
Confidence               11 222333445 445555543   355554433332222221100               01100           


Q ss_pred             ---hhhc--cCcHHHHHHhhcC----------CCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHH
Q 008827          287 ---SFMN--ETIVIPLVRLLDD----------TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIR  351 (552)
Q Consensus       287 ---~~~~--~~~i~~Lv~lL~~----------~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~  351 (552)
                         +|.+  ..++..|+++|++          .|+.+..-||.=|+.++..++..|..+-+.|+=..+++++.++|++||
T Consensus       385 Na~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr  464 (480)
T 1ho8_A          385 NIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVK  464 (480)
T ss_dssp             HSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHH
T ss_pred             HHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHH
Confidence               1232  3467889999973          378899999999999999999888777778998899999999999999


Q ss_pred             HHHHHHHHHhcc
Q 008827          352 LNALRALRNLIF  363 (552)
Q Consensus       352 ~~a~~aL~~l~~  363 (552)
                      .+|+.++..+..
T Consensus       465 ~~AL~avQklm~  476 (480)
T 1ho8_A          465 YEALKATQAIIG  476 (480)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887643

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=98.13  E-value=0.0013  Score=73.17  Aligned_cols=439  Identities=11%  Similarity=0.094  Sum_probs=228.8

Q ss_pred             ccchHHHHHhhcCC---CCcchHHHHHHHHhhcC--Chh----hHHHHHhcCchHHHHHhh--cCCHHHHHHHHHHHHHH
Q 008827           35 EENMEFLLSLLNNE---SENVSGLGASIISHSCK--TSL----EQKLLFDAGVLKRLTSLL--GGSLIQRDASLESIATI  103 (552)
Q Consensus        35 ~~~i~~l~~ll~~~---~~~~~~~a~~~l~~~~~--~~~----~~~~l~~~g~i~~L~~lL--~~~~~v~~~al~~L~~l  103 (552)
                      +++......+|..+   ++.++..++.+|.+.-+  ..+    .+ ...+...++.+...-  .....++.+...++..+
T Consensus        39 p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~-~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l  117 (980)
T 3ibv_A           39 STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLEL-QMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLL  117 (980)
T ss_dssp             TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHH-HHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHH-HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence            45667777788653   57899999999987543  122    22 223333444444311  11346888888888887


Q ss_pred             hcC-ChhhhhhhccccCCccHHHHHHHHhcCCh-hhHHHHHHHHHHHhhhCCC----c-----c-----hhhhhHH---h
Q 008827          104 FKN-NPEVVSQFVGPDTGRTLSCIIEIVKDRFA-RTRLLASLCLIVIRNASPC----Y-----L-----QDVGIKT---K  164 (552)
Q Consensus       104 ~~~-~~~~~~~~~~~~~~~~l~~l~~ll~~~~~-~vr~~A~~~L~~l~~~~~~----~-----~-----~~~~~~~---g  164 (552)
                      +.. .+..|        .+.++.++.++++++. .......+.|..+..--..    .     .     ++.+...   .
T Consensus       118 ~~~~~p~~W--------p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~  189 (980)
T 3ibv_A          118 FLQLYPSNW--------NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSD  189 (980)
T ss_dssp             HHHHTTTTC--------TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHhCcccC--------chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHH
Confidence            643 23433        4567778887775444 2333444444433221000    0     0     1111111   1


Q ss_pred             HHHHHHHhcC-----CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCCh
Q 008827          165 LINNLLELLD-----DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE  239 (552)
Q Consensus       165 ~i~~Lv~ll~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~  239 (552)
                      +.+....+|.     .++.+...+..++......-+-  ..+++.+.++.+.++|..    +.++..|+.+|..+.....
T Consensus       190 i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L~~----~~~r~~A~ecL~ei~~k~~  263 (980)
T 3ibv_A          190 IVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFLQI----EELRCAACETMTEIVNKKM  263 (980)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHTTS----HHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHcCC----hHHHHHHHHHHHHHHHcCC
Confidence            1333333332     3345666777777766654222  335556667777776654    6789999999999876432


Q ss_pred             --hHHHHHHhcccHHHHHHhcC--CCCHHHHHHHHHHHHHhhcccccc---c--------ch-hhhccCcHHHHHHhhcC
Q 008827          240 --CCRSRCLSLQVLKLVVDALA--HDSSDVRSAACMCLRSVSRSIKNL---S--------AG-SFMNETIVIPLVRLLDD  303 (552)
Q Consensus       240 --~~~~~~~~~~~l~~lv~~L~--~~~~~v~~~a~~~L~~ls~~~~~~---~--------~~-~~~~~~~i~~Lv~lL~~  303 (552)
                        +.+..++..=.+..++..+.  +++.++.+..++.+..++...-..   .        .. .-.-.++++.++..+.+
T Consensus       264 ~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~  343 (980)
T 3ibv_A          264 KPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSD  343 (980)
T ss_dssp             CHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTC
T ss_pred             ChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCC
Confidence              22222222211122222222  467777666665554442210000   0        00 00123678888888988


Q ss_pred             CCHHHHHHHHHHHHHhhcCC---------chhHHHHHhhCcHHHHHHhhcCC------C----------HHHHHHHHHHH
Q 008827          304 TSTAVQVAALGAISNIVVDF---------TTRRSTFIRLGGVKLLVQLSKSM------D----------STIRLNALRAL  358 (552)
Q Consensus       304 ~~~~v~~~a~~aL~nl~~~~---------~~~~~~~~~~g~i~~L~~ll~~~------~----------~~v~~~a~~aL  358 (552)
                      ++.++-..+...+..+....         ......++ ...++.+++-++-+      +          .+.|.... ++
T Consensus       344 ~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l-~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l  421 (980)
T 3ibv_A          344 DYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFL-KSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IF  421 (980)
T ss_dssp             SSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHH-HHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HH
T ss_pred             CchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHH-HHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HH
Confidence            88888877766665544211         01111111 13444444444321      1          12344333 33


Q ss_pred             HHhcccCChHhHHHHHHhhcHHHHHhhhc---CCChhHHHHHHHHHHHhhcCCcchHHHHHhhc----CchHHHHHHHhc
Q 008827          359 RNLIFLAEDKCKEEIFMELTASLLASLIC---DPEPSVQEQALALVRNLVDGRINSVEYIFAED----GIILDAVGRQLR  431 (552)
Q Consensus       359 ~~l~~~~~~~~~~~i~~~~~~~~l~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~----~~~~~~l~~~L~  431 (552)
                      ...+....++.-...+-....+.+.+.+.   +.++...+.++.+++.++++.+.....+ .+.    ..+++.+..+++
T Consensus       422 ~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~-~~~~~~lp~l~~ll~~ll~  500 (980)
T 3ibv_A          422 QDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFF-NEVDKSPTVLSQILALVTT  500 (980)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTB-CSSSCCBCHHHHHHHHHHH
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccccc-CcccchhHHHHHHHHHHHh
Confidence            32222112211111000112223333332   3468899999999999998754322111 111    125677777665


Q ss_pred             c----cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHH--hhcCCChhHHHHHHHHHHhhcC
Q 008827          432 I----ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIK--FLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       432 ~----~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~--lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      +    .+++.|+..++++++.++.-...+.+ .+        ..+++.++.  -+.+++..++..|+.++.+++.
T Consensus       501 s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~-~l--------~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~  566 (980)
T 3ibv_A          501 SQVCRHPHPLVQLLYMEILVRYASFFDYESA-AI--------PALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK  566 (980)
T ss_dssp             SSTTTCCCHHHHHHHHHHHHHTGGGGGTCCT-TH--------HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHhcCch-hH--------HHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence            2    36789999999999998863221111 11        233345555  5567788999999999999985

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.05  E-value=0.00059  Score=74.49  Aligned_cols=285  Identities=13%  Similarity=0.144  Sum_probs=184.4

Q ss_pred             hchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCCh---hHHHHHHhcccHHHHHH
Q 008827          180 GDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE---CCRSRCLSLQVLKLVVD  256 (552)
Q Consensus       180 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~---~~~~~~~~~~~l~~lv~  256 (552)
                      +..++..++.+...+....  ....+.+..|.+.+.+. .++   +.|+.++..+|....   ..--.+  .+.+|.++.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k-~~~---~~a~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~  102 (986)
T 2iw3_A           31 RHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDK-KTA---ANAMQAVAHIANQSNLSPSVEPYI--VQLVPAICT  102 (986)
T ss_dssp             HHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSH-HHH---HHHHHHHHHHTCTTTCCTTTHHHH--HTTHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhcc-CCH---HHHHHHHHHHHHhcCCCCCcccch--HHHHHHHHH
Confidence            3455666666544321100  01113445555555443 122   899999999985331   111112  257899999


Q ss_pred             hcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhHHHHHhhCc
Q 008827          257 ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT-STAVQVAALGAISNIVVDFTTRRSTFIRLGG  335 (552)
Q Consensus       257 ~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~  335 (552)
                      ...+....||.+|..++..+....+..     .-..++|.|+..|.+. .+..+..|+..+..++...+..- ...=...
T Consensus       103 ~~~dk~~~v~~aa~~~~~~~~~~~~~~-----a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~-~~~~~~~  176 (986)
T 2iw3_A          103 NAGNKDKEIQSVASETLISIVNAVNPV-----AIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV-ALRMPEL  176 (986)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHHHSCGG-----GHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH-HHHHHHH
T ss_pred             HhcCCchHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH-HHhccch
Confidence            999999999999999988887664322     2257899999999754 69999999999999997543221 1222468


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 008827          336 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI  415 (552)
Q Consensus       336 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  415 (552)
                      +|.+.+.+.+..++++..|..++..+|.-.++  ++   -+..+|.|++.+.+++.  ...++..|+.-+.-.. .....
T Consensus       177 ~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n--~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~-v~~~~  248 (986)
T 2iw3_A          177 IPVLSETMWDTKKEVKAAATAAMTKATETVDN--KD---IERFIPSLIQCIADPTE--VPETVHLLGATTFVAE-VTPAT  248 (986)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC--TT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSC-CCHHH
T ss_pred             hcchHhhcccCcHHHHHHHHHHHHHHHhcCCC--cc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEee-ecchh
Confidence            89999999999999999999999888763221  10   02468889998988743  3334444443332211 11111


Q ss_pred             HhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcC--CChhhHHHHHHHhhHhhhhhhHHHHHHhhcC-CChhHHHHHH
Q 008827          416 FAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT--GKESHKEAVMDQLLLRAENKAQSCIIKFLQS-NDSRLRTAAV  492 (552)
Q Consensus       416 ~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~--~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~-~~~~~~~~a~  492 (552)
                      +.   .+.|+|.+-|.. +...+++.++-++.||+.  .++.....++        ...+|.+.+.... .+|++|.-|.
T Consensus       249 l~---~~~p~l~r~l~~-~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~--------~~l~p~~~~~~~~~~~pe~r~~~~  316 (986)
T 2iw3_A          249 LS---IMVPLLSRGLNE-RETGIKRKSAVIIDNMCKLVEDPQVIAPFL--------GKLLPGLKSNFATIADPEAREVTL  316 (986)
T ss_dssp             HH---HHHHHHHHHHTS-SSHHHHHHHHHHHHHHHTTCCCHHHHHHHH--------TTTHHHHHHHTTTCCSHHHHHHHH
T ss_pred             HH---HHHHHHHhhhcc-CcchhheeeEEEEcchhhhcCCHHHHhhhh--------hhhhhHHHHHhhccCCHHHHHHHH
Confidence            11   157888888876 778899999999999997  5554344443        3444555554443 6899998887


Q ss_pred             HHHHhh
Q 008827          493 WAVLNL  498 (552)
Q Consensus       493 ~~l~~l  498 (552)
                      .++..|
T Consensus       317 ~a~~~l  322 (986)
T 2iw3_A          317 RALKTL  322 (986)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777766

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.97  E-value=0.002  Score=70.37  Aligned_cols=293  Identities=10%  Similarity=0.056  Sum_probs=192.0

Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC
Q 008827          224 FEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD  303 (552)
Q Consensus       224 ~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~  303 (552)
                      +..+...++.+...+...  .....+++..+.+.+.+....  +.|+.++..++..........-+--+.+|.++..+.|
T Consensus        31 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d  106 (986)
T 2iw3_A           31 RHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGN  106 (986)
T ss_dssp             HHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcC
Confidence            455566666664432111  112236788888888876555  8999999999865322110001222567888888889


Q ss_pred             CCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCC-HHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHH
Q 008827          304 TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD-STIRLNALRALRNLIFLAEDKCKEEIFMELTASLL  382 (552)
Q Consensus       304 ~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l  382 (552)
                      ....|+.+|..++..++...++..  +  ...+|.|+..+.+.. =..+..|+..+..++... ++.- ...-...+|.+
T Consensus       107 k~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~-~~~~~~~~p~~  180 (986)
T 2iw3_A          107 KDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQV-ALRMPELIPVL  180 (986)
T ss_dssp             SSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHH-HHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHH-HHhccchhcch
Confidence            899999999888877766544432  1  467899999887654 568889999999998643 3211 11112468888


Q ss_pred             HhhhcCCChhHHHHHHHHHHHhhcC--CcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHH
Q 008827          383 ASLICDPEPSVQEQALALVRNLVDG--RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAV  460 (552)
Q Consensus       383 ~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i  460 (552)
                      .+.+.+..++|..+|..++..+|.-  +.| ++.       .++.|++-+.+ |  +-...+...|+.-+--.+ .-...
T Consensus       181 ~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d-~~~-------~~~~~~~~~~~-p--~~~~~~~~~l~~~tfv~~-v~~~~  248 (986)
T 2iw3_A          181 SETMWDTKKEVKAAATAAMTKATETVDNKD-IER-------FIPSLIQCIAD-P--TEVPETVHLLGATTFVAE-VTPAT  248 (986)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHGGGCCCTT-TGG-------GHHHHHHHHHC-T--THHHHHHHHHTTCCCCSC-CCHHH
T ss_pred             HhhcccCcHHHHHHHHHHHHHHHhcCCCcc-hhh-------hHHHHHHHhcC-h--hhhHHHHHHhhcCeeEee-ecchh
Confidence            9999999999999999999998842  221 111       46777777765 3  335556677765443221 11111


Q ss_pred             HHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhc-CCCccHHHHHHH
Q 008827          461 MDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN-DPCLDVKLRVKT  539 (552)
Q Consensus       461 ~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~-~~~~~v~~~a~~  539 (552)
                      +        .=.+|.|.+-|......++..++-.+-|++.-.  ..+.-...+. -..+|.+.+..+ -.+|++|+.+..
T Consensus       249 l--------~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv--~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~  317 (986)
T 2iw3_A          249 L--------SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLV--EDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLR  317 (986)
T ss_dssp             H--------HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC--CCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHH
T ss_pred             H--------HHHHHHHHhhhccCcchhheeeEEEEcchhhhc--CCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHH
Confidence            1        234588888898889999999999999999632  2333334442 335677777654 368999999999


Q ss_pred             HHHHHhhhcC
Q 008827          540 ALEQFNSFDD  549 (552)
Q Consensus       540 al~~~~~~~~  549 (552)
                      |+..+.+.++
T Consensus       318 a~~~l~~~~~  327 (986)
T 2iw3_A          318 ALKTLRRVGN  327 (986)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhhc
Confidence            9999877643

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.95  E-value=0.014  Score=64.87  Aligned_cols=423  Identities=10%  Similarity=0.041  Sum_probs=223.1

Q ss_pred             CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcC---ChhhHHHHHHHHHHHhhhCCCc-c--hhhhhH
Q 008827           89 SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDR---FARTRLLASLCLIVIRNASPCY-L--QDVGIK  162 (552)
Q Consensus        89 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~vr~~A~~~L~~l~~~~~~~-~--~~~~~~  162 (552)
                      +...|..|-..|..+-+. ++.+            .....++.++   ++.+|..|+..|.+....-+.. .  ....++
T Consensus        21 d~~~r~~A~~~L~~~q~s-p~aw------------~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr   87 (980)
T 3ibv_A           21 GPIIKQQATDFIGSLRSS-STGW------------KICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR   87 (980)
T ss_dssp             CHHHHHHHHHHHHHHHHS-TTHH------------HHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcC-hhHH------------HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH
Confidence            457788888877775433 3332            2334455443   7899999999999877732222 0  223444


Q ss_pred             HhHHHHHHHhcC--CCCchhchHHHHHHHhhcCC-HHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC--
Q 008827          163 TKLINNLLELLD--DPGRVGDEASFAFSSLIAEK-EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK--  237 (552)
Q Consensus       163 ~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~--  237 (552)
                      ..+++.+.+.-.  ++..++.+.+.+++.++... +..     =.+.++.++..+..++. .......++.|..+..+  
T Consensus        88 ~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~-----Wp~~i~~l~~~~~~~~~-~~~~~~~LriL~~i~EEv~  161 (980)
T 3ibv_A           88 DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSN-----WNDFFASLQGVIAASSQ-SEFSNFYLKVLLSIGDEIA  161 (980)
T ss_dssp             HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCccc-----CchHHHHHHHHhcCCCh-hHHHHHHHHHHHHhHHHHH
Confidence            556666666221  34568889999888886421 100     02456667776655421 12334445555533221  


Q ss_pred             ------Ch--hH-----HHHHHhc---ccHHHHHHhc----CCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHH
Q 008827          238 ------LE--CC-----RSRCLSL---QVLKLVVDAL----AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPL  297 (552)
Q Consensus       238 ------~~--~~-----~~~~~~~---~~l~~lv~~L----~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~L  297 (552)
                            ++  ..     ++.+.+.   .+.+.+..+|    ...++.++..+..++.......+.   ..+...+.++.+
T Consensus       162 ~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~---~~i~~~~ll~~l  238 (980)
T 3ibv_A          162 DSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI---NLIVNEPCMNLL  238 (980)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH---HHHHCHHHHHHH
T ss_pred             hcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH---HhhhcchHHHHH
Confidence                  00  01     1222221   1233344444    346888889999999888664222   225667888889


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhhcCCc--hhHHHHHhhCcHHHHHHhhc--CCCHHHHHHHHHHHHHhc------ccCC-
Q 008827          298 VRLLDDTSTAVQVAALGAISNIVVDFT--TRRSTFIRLGGVKLLVQLSK--SMDSTIRLNALRALRNLI------FLAE-  366 (552)
Q Consensus       298 v~lL~~~~~~v~~~a~~aL~nl~~~~~--~~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~aL~~l~------~~~~-  366 (552)
                      +++|.+  ++++..|+.+|..+.....  ..+..+++.=.+...+..+.  ..|.+..+.-+..+..++      ...+ 
T Consensus       239 ~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~  316 (980)
T 3ibv_A          239 YSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPS  316 (980)
T ss_dssp             HHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence            988865  7999999999999876443  22223332211122222222  356665544333332221      1111 


Q ss_pred             ---hHhHHHHHH--hhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC----------------------------------
Q 008827          367 ---DKCKEEIFM--ELTASLLASLICDPEPSVQEQALALVRNLVDG----------------------------------  407 (552)
Q Consensus       367 ---~~~~~~i~~--~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~----------------------------------  407 (552)
                         ++.+.+...  ...++.++..+.+++.++-..++..+..+...                                  
T Consensus       317 ~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d  396 (980)
T 3ibv_A          317 ELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDES  396 (980)
T ss_dssp             --CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCc
Confidence               122222211  24566777777766665554443333322210                                  


Q ss_pred             ---Cc----chHHH-------------HHhhcC--chHH----HHHHHhcc------cCchhHHHHHHHHHHhhcCCChh
Q 008827          408 ---RI----NSVEY-------------IFAEDG--IILD----AVGRQLRI------ASKAEIEIQGMYVLGNVATGKES  455 (552)
Q Consensus       408 ---~~----~~~~~-------------i~~~~~--~~~~----~l~~~L~~------~~~~~v~~~a~~~L~~la~~~~~  455 (552)
                         +.    +..+.             ++.-.|  .+++    .+...+.+      +.++...+.++++|+.++.+...
T Consensus       397 ~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~  476 (980)
T 3ibv_A          397 QEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRG  476 (980)
T ss_dssp             CCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCS
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccc
Confidence               00    00000             000000  1233    33333321      24577888999999998876432


Q ss_pred             hHHHHHH--HhhHhhhhhhHHHHHHhhc-----CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhh---
Q 008827          456 HKEAVMD--QLLLRAENKAQSCIIKFLQ-----SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNM---  525 (552)
Q Consensus       456 ~~~~i~~--~~~~~~~~~~v~~Lv~lL~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~l---  525 (552)
                      ....+.+  ..    ...+++.+..+++     .+++.+|..++++++.++.- -..         ....++++.+.   
T Consensus       477 ~~~~~~~~~~~----lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~-~~~---------~~~~l~~~L~~ll~  542 (980)
T 3ibv_A          477 PDAFFNEVDKS----PTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASF-FDY---------ESAAIPALIEYFVG  542 (980)
T ss_dssp             GGGTBCSSSCC----BCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGG-GGT---------CCTTHHHHHHHHTS
T ss_pred             cccccCcccch----hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHH-Hhc---------CchhHHHHHHHHhc
Confidence            1110000  00    0134456666665     67899999999999999730 001         11334444443   


Q ss_pred             ---hcCCCccHHHHHHHHHHHHhhhcC
Q 008827          526 ---VNDPCLDVKLRVKTALEQFNSFDD  549 (552)
Q Consensus       526 ---l~~~~~~v~~~a~~al~~~~~~~~  549 (552)
                         +.++++.|+.+|..|+.+|-+...
T Consensus       543 ~~gl~~~~~~V~~~a~~af~~f~~~~~  569 (980)
T 3ibv_A          543 PRGIHNTNERVRPRAWYLFYRFVKSIK  569 (980)
T ss_dssp             TTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred             cccccCCChhHHHHHHHHHHHHHHHhh
Confidence               335678899999999999977643

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.93  E-value=0.017  Score=64.36  Aligned_cols=466  Identities=12%  Similarity=0.087  Sum_probs=231.0

Q ss_pred             cchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhc-C-CHHHHHHHHHHHHHHhcC-----Ch
Q 008827           36 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG-G-SLIQRDASLESIATIFKN-----NP  108 (552)
Q Consensus        36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~-~-~~~v~~~al~~L~~l~~~-----~~  108 (552)
                      ..+..++..+.+++...+..|-..|...-+.         .++......+|. + ++.+|.-|+..|.+....     ++
T Consensus        16 ~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s---------p~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~   86 (1023)
T 4hat_C           16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDN---------PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN   86 (1023)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC---------TTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHcC---------ccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCH
Confidence            4455555555555545666666666555433         234455556665 2 678999999999876532     11


Q ss_pred             hhhhhhccccCCccHHHHHHHHhcC-----ChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchH
Q 008827          109 EVVSQFVGPDTGRTLSCIIEIVKDR-----FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEA  183 (552)
Q Consensus       109 ~~~~~~~~~~~~~~l~~l~~ll~~~-----~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a  183 (552)
                      +....+.    ...+..+.....++     .+.++..-+.++..++...--     ..+...++.++++++.++......
T Consensus        87 e~~~~Ir----~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p-----~~Wp~~l~dL~~~l~~~~~~~~~~  157 (1023)
T 4hat_C           87 DHRIGIR----NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-----QNWPEFIPELIGSSSSSVNVCENN  157 (1023)
T ss_dssp             HHHHHHH----HHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT-----TTCTTHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHH----HHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh-----hhchHHHHHHHHHhcCCHHHHHHH
Confidence            1111111    11122222222221     345666677778877765310     124678889999987554434444


Q ss_pred             HHHHHHhhcC---------CHH----HHHHHHH--hCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhc
Q 008827          184 SFAFSSLIAE---------KED----MQKLAFE--VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL  248 (552)
Q Consensus       184 ~~~L~~l~~~---------~~~----~~~~~~~--~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~  248 (552)
                      ...|..+..+         ...    .+..+.+  ...++.+..+|..+ ..+.+...++.++......-+  -..+.+.
T Consensus       158 L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~-~~~~l~~~~L~~l~s~l~WI~--i~~i~~~  234 (1023)
T 4hat_C          158 MIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG-ASSSLIVATLESLLRYLHWIP--YRYIYET  234 (1023)
T ss_dssp             HHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTTSC--THHHHSS
T ss_pred             HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCC--HHHhcch
Confidence            4555444322         111    1111111  11233444555544 356778889999998876422  2446677


Q ss_pred             ccHHHHH-HhcCCCCHHHHHHHHHHHHHhhcc-c-ccc--cchhhh--ccCcHHHH--------------HHhhcCCCHH
Q 008827          249 QVLKLVV-DALAHDSSDVRSAACMCLRSVSRS-I-KNL--SAGSFM--NETIVIPL--------------VRLLDDTSTA  307 (552)
Q Consensus       249 ~~l~~lv-~~L~~~~~~v~~~a~~~L~~ls~~-~-~~~--~~~~~~--~~~~i~~L--------------v~lL~~~~~~  307 (552)
                      +.++.+. .++.  ++.++..|+.||..+... . ...  ....+.  -.+.++.+              +.--.+.|.+
T Consensus       235 ~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e  312 (1023)
T 4hat_C          235 NILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQS  312 (1023)
T ss_dssp             SHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHH
T ss_pred             hHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHH
Confidence            8899998 8874  678999999999998752 1 110  000000  00111111              1111223455


Q ss_pred             HHHHHHHHHHHhhcCC-------chhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccc--CChHhH---HHHHH
Q 008827          308 VQVAALGAISNIVVDF-------TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL--AEDKCK---EEIFM  375 (552)
Q Consensus       308 v~~~a~~aL~nl~~~~-------~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~---~~i~~  375 (552)
                      ....-+..+..+....       +..+. ++ ..++..++.....++.++-..++..=..++..  .++..+   ..+..
T Consensus       313 ~~~~l~~l~~~~~e~~~~li~~~~~~~~-~l-~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~  390 (1023)
T 4hat_C          313 FLQDLAMFLTTYLARNRALLESDESLRE-LL-LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS  390 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGTSCGGGHH-HH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcchhH-HH-HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            5555555554333211       11111 11 12233455554556666655544332222210  111011   01111


Q ss_pred             hhcHHHHHhhhcCCC-------------------hh--HHHHHH-HHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-
Q 008827          376 ELTASLLASLICDPE-------------------PS--VQEQAL-ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-  432 (552)
Q Consensus       376 ~~~~~~l~~ll~~~~-------------------~~--v~~~a~-~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~-  432 (552)
                       ..++.+++-+.-|+                   .+  ..-... .+|..++.-..+   .++..   .++.+.+.+.+ 
T Consensus       391 -~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~---~~~~~---~~~~l~~~l~~~  463 (1023)
T 4hat_C          391 -QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI---DTEEI---MISKLARQIDGS  463 (1023)
T ss_dssp             -HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHH---HHHHH---HHHHHHHHHSST
T ss_pred             -HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHH---HHHHH---HHHHHHHHhcCC
Confidence             12333443333221                   01  111011 222222211110   01110   23444444443 


Q ss_pred             cCchhHHHHHHHHHHhhcCCChhh-HHHHHHHhhHhhhhhhHHHHHHhhcC-----CChhHHHHHHHHHHhhcCCCCCCC
Q 008827          433 ASKAEIEIQGMYVLGNVATGKESH-KEAVMDQLLLRAENKAQSCIIKFLQS-----NDSRLRTAAVWAVLNLTCSSSPGS  506 (552)
Q Consensus       433 ~~~~~v~~~a~~~L~~la~~~~~~-~~~i~~~~~~~~~~~~v~~Lv~lL~~-----~~~~~~~~a~~~l~~l~~~~~~~~  506 (552)
                      +.++..++.++|+++.++.+.... -...+        ..+++.|+.++.+     +...++..++|+++.++.    =.
T Consensus       464 ~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l--------~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~----wl  531 (1023)
T 4hat_C          464 EWSWHNINTLSWAIGSISGTMSEDTEKRFV--------VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPR----FL  531 (1023)
T ss_dssp             TCCHHHHHHHHHHHHHTTTSSCHHHHHHHH--------HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHH----HH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCCchhHHHHH--------HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHH----HH
Confidence            257899999999999999865432 22333        3567788888863     334566778899999873    00


Q ss_pred             HHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          507 SGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       507 ~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      ..+.+.|  ..++..|.+-+.++++.|++.|++|+.++.+.
T Consensus       532 ~~~~~~L--~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~  570 (1023)
T 4hat_C          532 KAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQK  570 (1023)
T ss_dssp             HHCHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence            1111111  12244455555667788999999999998764

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.91  E-value=0.00066  Score=63.87  Aligned_cols=153  Identities=15%  Similarity=0.212  Sum_probs=116.8

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHH-hhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHH-
Q 008827          254 VVDALAHDSSDVRSAACMCLRS-VSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFI-  331 (552)
Q Consensus       254 lv~~L~~~~~~v~~~a~~~L~~-ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~-  331 (552)
                      +++-|.+++.+.++.+..-|.. ++.. ...... |+..+++..|+.+..+.+.+.+..+..|+.++.. +......++ 
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~E-FI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs  199 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPE-FVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHH-HHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHHHHHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHH-HHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccccccchhC
Confidence            4455556667777777777777 5544 445555 8999999999999999999999999999999996 444444444 


Q ss_pred             hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhh----------cHHHHHhhhc---CCChhHHHHHH
Q 008827          332 RLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL----------TASLLASLIC---DPEPSVQEQAL  398 (552)
Q Consensus       332 ~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~----------~~~~l~~ll~---~~~~~v~~~a~  398 (552)
                      ....|..+..++.+.+..+...|+..|..++..++. ....+.++-          .++.++.+|.   +.|.+++.+++
T Consensus       200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~-~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN-NAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            456889999999988899999999999999876532 333333322          2788999997   78999999999


Q ss_pred             HHHHHhhcCCcc
Q 008827          399 ALVRNLVDGRIN  410 (552)
Q Consensus       399 ~~L~~l~~~~~~  410 (552)
                      .++..+..+.++
T Consensus       279 tLIN~lL~~apd  290 (339)
T 3dad_A          279 TLINKTLAALPD  290 (339)
T ss_dssp             HHHHHHHHHCSS
T ss_pred             HHHHHHHhcCCC
Confidence            999888766553

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.90  E-value=0.0012  Score=62.10  Aligned_cols=191  Identities=17%  Similarity=0.160  Sum_probs=134.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHH
Q 008827          295 IPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIF  374 (552)
Q Consensus       295 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~  374 (552)
                      ..++.-|.+.+.+.+..+...|..+..........+++.+|+..|+......+..++..++.|+.++-.+.  +--..++
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v--~Gm~gvv  198 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV--DGMLGVV  198 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH--HHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc--ccccchh
Confidence            34555666677788899999999855455677788999999999999999999999999999999986532  1222333


Q ss_pred             -HhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc--------CchHHHHHHHhc--ccCchhHHHHHH
Q 008827          375 -MELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAED--------GIILDAVGRQLR--IASKAEIEIQGM  443 (552)
Q Consensus       375 -~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~--------~~~~~~l~~~L~--~~~~~~v~~~a~  443 (552)
                       +...+..+..++.+.+..|...|+.+|..++..++.....+.++-        ...++.++.+|+  ++.+.+++.+++
T Consensus       199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence             556788999999999999999999999999877665544443321        124678888887  237889999988


Q ss_pred             HHHHhhcCCCh--hhHHHHHHHhhHhhhhhhHHHHHHhhcCC--ChhHHHH
Q 008827          444 YVLGNVATGKE--SHKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTA  490 (552)
Q Consensus       444 ~~L~~la~~~~--~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~--~~~~~~~  490 (552)
                      ..|..+..+.+  +.+..+.+. +.  ..|+-..+.+.+++.  +++++..
T Consensus       279 tLIN~lL~~apd~d~~~di~d~-Le--~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          279 TLINKTLAALPDQDSFYDVTDA-LE--QQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHH-HH--HTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHH-HH--HccHHHHHHHHHhccCCCHHHHHH
Confidence            87776655333  223344331 11  245545666666654  5555544

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.55  E-value=0.13  Score=57.25  Aligned_cols=461  Identities=10%  Similarity=0.103  Sum_probs=228.5

Q ss_pred             ccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC--CHHHHHHHHHHHHHHhcCC-----
Q 008827           35 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNN-----  107 (552)
Q Consensus        35 ~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~-----  107 (552)
                      ...+..++..+.+++...+..|-..|...-+.++         +......+|.+  ++.+|.-|+..|.+....+     
T Consensus        27 v~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~   97 (1073)
T 3gjx_A           27 INLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILP   97 (1073)
T ss_dssp             HHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence            3456667766666776777778888877765433         33444555653  5789999999998865421     


Q ss_pred             hhhhhhhccccCCccHHHHHHHHhc-----CChhhHHHHHHHHHHHhhhC-CCcchhhhhHHhHHHHHHHhcCCCCchhc
Q 008827          108 PEVVSQFVGPDTGRTLSCIIEIVKD-----RFARTRLLASLCLIVIRNAS-PCYLQDVGIKTKLINNLLELLDDPGRVGD  181 (552)
Q Consensus       108 ~~~~~~~~~~~~~~~l~~l~~ll~~-----~~~~vr~~A~~~L~~l~~~~-~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~  181 (552)
                      ++....+.    ...+..+.....+     .++.++..-+.++..++... +.      .+...++-++++++.++....
T Consensus        98 ~e~~~~LR----~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~------~Wp~fi~dLv~~~~~~~~~~~  167 (1073)
T 3gjx_A           98 RNQCEGIK----KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK------HWPTFISDIVGASRTSESLCQ  167 (1073)
T ss_dssp             HHHHHHHH----HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT------TCTTHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHH----HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh------hccHHHHHHHHHhCCCHHHHH
Confidence            11111111    1111222222222     24566666777777777643 11      234577777777753333333


Q ss_pred             hHHHHHHHhhcC---CH----------HHHHHHHHh--CcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q 008827          182 EASFAFSSLIAE---KE----------DMQKLAFEV--NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL  246 (552)
Q Consensus       182 ~a~~~L~~l~~~---~~----------~~~~~~~~~--~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~  246 (552)
                      ....+|..+..+   ..          ..+..+.+.  ..++.+..+|... .++.+...++.++......-+-  ..++
T Consensus       168 ~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~-~~~~lv~~~L~~L~~~~sWI~i--~~i~  244 (1073)
T 3gjx_A          168 NNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENS-QNAPLVHATLETLLRFLNWIPL--GYIF  244 (1073)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSCT--HHHH
T ss_pred             HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHhcCH--HHhc
Confidence            444555555432   10          011112211  1122333444444 3577778888999988765332  3566


Q ss_pred             hcccHHHHH-HhcCCCCHHHHHHHHHHHHHhhccc-ccccchhhh--ccCcHHHHHHhh-------------cCCCHHHH
Q 008827          247 SLQVLKLVV-DALAHDSSDVRSAACMCLRSVSRSI-KNLSAGSFM--NETIVIPLVRLL-------------DDTSTAVQ  309 (552)
Q Consensus       247 ~~~~l~~lv-~~L~~~~~~v~~~a~~~L~~ls~~~-~~~~~~~~~--~~~~i~~Lv~lL-------------~~~~~~v~  309 (552)
                      +.+.++.++ .+|  +++.+|..|+.||..+.... +..... +.  -.+++..+-.++             .+.|++..
T Consensus       245 ~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~-~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~  321 (1073)
T 3gjx_A          245 ETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQ-FETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFI  321 (1073)
T ss_dssp             SSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHH-HHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHH
T ss_pred             cchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHH-HHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHH
Confidence            778888874 666  46789999999999986531 111111 10  011121111222             12233444


Q ss_pred             HHHHHHHHHhhcCCchhHHHHHhhC---------cHHHHHHhhcCCCHHHHHHHHHHHH----HhcccC------Ch---
Q 008827          310 VAALGAISNIVVDFTTRRSTFIRLG---------GVKLLVQLSKSMDSTIRLNALRALR----NLIFLA------ED---  367 (552)
Q Consensus       310 ~~a~~aL~nl~~~~~~~~~~~~~~g---------~i~~L~~ll~~~~~~v~~~a~~aL~----~l~~~~------~~---  367 (552)
                      ..-+..+..+...+   . .+++.+         ++..++.....++.++-..+...=.    .+....      ++   
T Consensus       322 ~~l~~~f~~~~e~~---~-~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~  397 (1073)
T 3gjx_A          322 QNLSLFLCTFLKEH---G-QLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLS  397 (1073)
T ss_dssp             HHHHHHHHHHHHHH---H-HHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTT
T ss_pred             HHHHHHHHHHHHHH---H-HHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence            44444444433211   1 122221         3344555556677776665543321    222111      00   


Q ss_pred             -------HhHHHHHHh---hcHHHHHhhhcCCC--------------------h-----hHHHHHHHHHHHhhcCCcchH
Q 008827          368 -------KCKEEIFME---LTASLLASLICDPE--------------------P-----SVQEQALALVRNLVDGRINSV  412 (552)
Q Consensus       368 -------~~~~~i~~~---~~~~~l~~ll~~~~--------------------~-----~v~~~a~~~L~~l~~~~~~~~  412 (552)
                             ..+..+...   .....++.-+.-|+                    .     +....++..+.++.   ++..
T Consensus       398 ~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~---~~~~  474 (1073)
T 3gjx_A          398 GSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLD---YVDT  474 (1073)
T ss_dssp             SSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHC---HHHH
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCC---HHHH
Confidence                   011111110   11222222222121                    0     12222333333322   1111


Q ss_pred             HHHHhhcCchHHHHHHHhcc-cCchhHHHHHHHHHHhhcCCChhh-HHHHHHHhhHhhhhhhHHHHHHhhcCC---C--h
Q 008827          413 EYIFAEDGIILDAVGRQLRI-ASKAEIEIQGMYVLGNVATGKESH-KEAVMDQLLLRAENKAQSCIIKFLQSN---D--S  485 (552)
Q Consensus       413 ~~i~~~~~~~~~~l~~~L~~-~~~~~v~~~a~~~L~~la~~~~~~-~~~i~~~~~~~~~~~~v~~Lv~lL~~~---~--~  485 (552)
                      ..+      +++.+.+.+.+ ..++...+.++|+++.++..-... -+.++        ..+++.|+.+...+   +  .
T Consensus       475 ~~i------~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L--------p~vi~~Ll~L~e~~~~kd~k~  540 (1073)
T 3gjx_A          475 EII------MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL--------VTVIKDLLGLCEQKRGKDNKA  540 (1073)
T ss_dssp             HHH------HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH--------HHHHHHHHHHHHHSCSHHHHH
T ss_pred             HHH------HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH--------HHHHHHHhcccccccccchhH
Confidence            111      23444444443 246889999999999998532211 12233        35667777777554   2  2


Q ss_pred             hHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          486 RLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       486 ~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      .++...+|+++++..    =...+.+.|  ..++..|.+.+.++++.|++.|+.|+..|.+-
T Consensus       541 ~vas~i~~vlgrY~~----wl~~h~~~L--~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~  596 (1073)
T 3gjx_A          541 IIASNIMYIVGQYPR----FLRAHWKFL--KTVVNKLFEFMHETHDGVQDMACDTFIKIAQK  596 (1073)
T ss_dssp             HHHHHHHHHHHHCHH----HHHHCHHHH--HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHH----HHHhCHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            355556689988862    011111222  12345555666788999999999999888654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.0082  Score=56.41  Aligned_cols=187  Identities=10%  Similarity=0.084  Sum_probs=123.4

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCCchhH--HHHH--hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChH----
Q 008827          297 LVRLLDDTSTAVQVAALGAISNIVVDFTTRR--STFI--RLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK----  368 (552)
Q Consensus       297 Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~--~~~~--~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~----  368 (552)
                      +-.-|.+.++..|.+|...+..+........  ....  -....+.+-..+.+.|..++..++.++..++......    
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            6678889999999999999988775433211  1111  0134455667888999999999999999887543221    


Q ss_pred             hHHHHHHhhcHHHHHh-hhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHH
Q 008827          369 CKEEIFMELTASLLAS-LICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLG  447 (552)
Q Consensus       369 ~~~~i~~~~~~~~l~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~  447 (552)
                      ......-...++.|+. .+.+..+.++..+..++..++...... ..       +++.+...+.+ .+|.++..++..|.
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-------~~e~l~~~l~~-Knpkv~~~~l~~l~  164 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-------SVELVIPFFEK-KLPKLIAAAANCVY  164 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-------HHHHHGGGGGC-SCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-------HHHHHHHHHhc-cCHHHHHHHHHHHH
Confidence            1122223345666665 578888999999988887776432110 11       34555566666 89999999998888


Q ss_pred             hhcC--CChh-hHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcC
Q 008827          448 NVAT--GKES-HKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       448 ~la~--~~~~-~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~  500 (552)
                      .+..  |... .....+        ..+++.+..++.+.|+.||.+|..++..+-.
T Consensus       165 ~~l~~fg~~~~~~k~~l--------~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          165 ELMAAFGLTNVNVQTFL--------PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHTTTTCCHHHHH--------HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCcCCchhHH--------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            7654  1110 122222        2345678889999999999999999987753

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.32  E-value=0.01  Score=55.75  Aligned_cols=190  Identities=15%  Similarity=0.132  Sum_probs=124.0

Q ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc--chhhh-ccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh
Q 008827          250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS--AGSFM-NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR  326 (552)
Q Consensus       250 ~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~--~~~~~-~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~  326 (552)
                      -+| +-+-|.+.+|..|..+...+..+-.......  ...+. -....+.+-..+.|.+..++..++.++..++......
T Consensus        11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~   89 (278)
T 4ffb_C           11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS   89 (278)
T ss_dssp             CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred             cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence            355 6688999999999999998887654322111  00000 1234555667888999999999999999887543211


Q ss_pred             ---H--HHHHhhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHH
Q 008827          327 ---R--STFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALAL  400 (552)
Q Consensus       327 ---~--~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~  400 (552)
                         +  ....-...++.|++- +.+....++..+..++..++....+  .     ...++.+...+.+.++.++..++..
T Consensus        90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~-----~~~~e~l~~~l~~Knpkv~~~~l~~  162 (278)
T 4ffb_C           90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--I-----TQSVELVIPFFEKKLPKLIAAAANC  162 (278)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--S-----HHHHHHHGGGGGCSCHHHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--H-----HHHHHHHHHHHhccCHHHHHHHHHH
Confidence               1  111223567778764 7888899999998888777653221  0     1235667778899999999999988


Q ss_pred             HHHhhcC--Cc-chHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcC
Q 008827          401 VRNLVDG--RI-NSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT  451 (552)
Q Consensus       401 L~~l~~~--~~-~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~  451 (552)
                      |..+...  .. -.....+..   +++.+..+|.+ ++++||..|..+++.+-.
T Consensus       163 l~~~l~~fg~~~~~~k~~l~~---i~~~l~k~l~d-~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          163 VYELMAAFGLTNVNVQTFLPE---LLKHVPQLAGH-GDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHHTTTTCCHHHHHHH---HGGGHHHHHTC-SSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCcCCchhHHHH---HHHHHHHHHhC-CcHHHHHHHHHHHHHHHH
Confidence            8877532  11 011222211   44566677777 999999999998876653

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.27  E-value=0.0053  Score=61.32  Aligned_cols=254  Identities=14%  Similarity=0.069  Sum_probs=151.4

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHHHHHH
Q 008827          124 SCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFE  203 (552)
Q Consensus       124 ~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  203 (552)
                      ..++.-+-++.+++|.-|+..|..+.+.....       .|..       .....  .-|++.+.-++            
T Consensus       177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~G-------AGR~-------~~~N~--DLAvRLLCVLA------------  228 (800)
T 3oc3_A          177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-------GDIQ-------IRVDS--KLFSKIYEILV------------  228 (800)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCCT--THHHHHHHHHH------------
T ss_pred             HHHHHHhcCcchhhhhHHHHHHHHHHHHhccC-------Ccee-------ccccH--HHHHHHHHHHH------------
Confidence            34455566899999999999999988764321       0100       10001  22333332222            


Q ss_pred             hCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc
Q 008827          204 VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL  283 (552)
Q Consensus       204 ~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~  283 (552)
                         +.++.++..+. .-..+||.+..+|+.+ ..-++-      ..++..++..+..+.|++|..+.-.|..+.   +-+
T Consensus       229 ---LDRFGDYVSDq-VVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL  294 (800)
T 3oc3_A          229 ---TDKFNDFVDDR-TVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFV  294 (800)
T ss_dssp             ---HBCCBBCSSSS-CBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGC
T ss_pred             ---hccccccccCe-eeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHH
Confidence               11222333333 2245899999999998 543321      345666666668889999999999999881   111


Q ss_pred             cchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCC-HH-HHHHHHHHHHHh
Q 008827          284 SAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD-ST-IRLNALRALRNL  361 (552)
Q Consensus       284 ~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~-v~~~a~~aL~~l  361 (552)
                      . .   -.++++.++..|++.|.+|+..|+.+|.-++ .. ...     ..++..+...|.+-+ -. -....+..|+.+
T Consensus       295 ~-~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p-~~l-----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL  363 (800)
T 3oc3_A          295 E-D---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-IT-DSL-----DLVLEKCWKNIESEELISVSKTSNLSLLTKI  363 (800)
T ss_dssp             C-C---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CS-STH-----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHH
T ss_pred             H-H---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-ch-hhH-----HHHHHHHHHHhhhhcccchhhHHHHHHHHHH
Confidence            1 1   2577888999999999999999999999888 22 211     234555665555421 11 112233344554


Q ss_pred             cccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHH
Q 008827          362 IFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQ  441 (552)
Q Consensus       362 ~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~  441 (552)
                      +.... ...   .....+|.|..+++++-+.|+..++.++..+..  .+           ++.++-+-+--+++++|+..
T Consensus       364 ~s~p~-~a~---~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~--~~-----------~LRLIFQNILLE~neeIl~l  426 (800)
T 3oc3_A          364 YRENP-ELS---IPPERLKDIFPCFTSPVPEVRTSILNMVKNLSE--ES-----------IDFLVAEVVLIEEKDEIREM  426 (800)
T ss_dssp             HHHCT-TCC---CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCC--HH-----------HHHHHHHHHHHCSCHHHHHH
T ss_pred             HcCCc-ccc---cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh--hh-----------HHHHHHHHHHhCCcHHHHHH
Confidence            43221 000   012578899999999999999999999988772  11           33333332222267777777


Q ss_pred             HHHHHH
Q 008827          442 GMYVLG  447 (552)
Q Consensus       442 a~~~L~  447 (552)
                      +..+-.
T Consensus       427 S~~VWk  432 (800)
T 3oc3_A          427 AIKLLK  432 (800)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666553

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.20  E-value=0.00031  Score=64.29  Aligned_cols=43  Identities=19%  Similarity=0.191  Sum_probs=25.3

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHH
Q 008827          254 VVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGA  315 (552)
Q Consensus       254 lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~a  315 (552)
                      +..+++++++.||..++..+       +            .+.|..+++++++.||..++..
T Consensus        79 l~~L~~D~~~~VR~~aA~~L-------~------------~~~L~~ll~D~d~~VR~~aA~~  121 (244)
T 1lrv_A           79 LTPLIRDSDEVVRRAVAYRL-------P------------REQLSALMFDEDREVRITVADR  121 (244)
T ss_dssp             GGGGTTCSSHHHHHHHHTTS-------C------------SGGGGGTTTCSCHHHHHHHHHH
T ss_pred             HHHHccCcCHHHHHHHHHHC-------C------------HHHHHHHHcCCCHHHHHHHHHh
Confidence            45566677777777766431       0            0235556666777777666663

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.02  E-value=0.023  Score=52.27  Aligned_cols=178  Identities=14%  Similarity=0.105  Sum_probs=117.8

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhh--cHHHHHhhhcCCChhHHHHHHHHHHHhhcC----Ccch
Q 008827          338 LLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL--TASLLASLICDPEPSVQEQALALVRNLVDG----RINS  411 (552)
Q Consensus       338 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~--~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~  411 (552)
                      .+...+-+.+..-+..++..|...... .   .+.++...  .+..+.--+.+.++.+...++.+|..+...    ....
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~-~---~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~  125 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADT-S---PRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM  125 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHH-C---HHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhh-C---hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence            445556666777778888777765432 2   22332211  233333234577999999999998887532    1111


Q ss_pred             HHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHH
Q 008827          412 VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAA  491 (552)
Q Consensus       412 ~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a  491 (552)
                      ..+-   .+.++|.|+..+.+ +++.++..+-.++..+..        +..      ...+.+.+..-+++.|...|.++
T Consensus       126 ~~~e---a~~~lP~LveKlGd-~k~~vR~~~r~il~~l~~--------v~~------~~~v~~~l~~g~ksKN~R~R~e~  187 (266)
T 2of3_A          126 SQEE---VSAFVPYLLLKTGE-AKDNMRTSVRDIVNVLSD--------VVG------PLKMTPMLLDALKSKNARQRSEC  187 (266)
T ss_dssp             CHHH---HHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHH--------HHC------HHHHHHHHHHGGGCSCHHHHHHH
T ss_pred             hHHH---HHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHH--------HCC------HHHHHHHHHHHHccCCHHHHHHH
Confidence            1111   11267888888876 778899888877765542        111      13455778888899999999999


Q ss_pred             HHHHHhhcCCCCCCCHHHHHHHHHCCcH---HHHHhhhcCCCccHHHHHHHHHHHHhh
Q 008827          492 VWAVLNLTCSSSPGSSGRLVKLHDAGIV---SHVKNMVNDPCLDVKLRVKTALEQFNS  546 (552)
Q Consensus       492 ~~~l~~l~~~~~~~~~~~~~~l~~~g~~---~~L~~ll~~~~~~v~~~a~~al~~~~~  546 (552)
                      +..+..+...  .|..       ...++   +.+.+++.|++..||+.|..++..+..
T Consensus       188 l~~l~~li~~--~G~~-------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          188 LLVIEYYITN--AGIS-------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHHHHHHHH--HCSG-------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--cCCC-------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            9999999852  2443       13467   999999999999999999988876544

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.00  E-value=0.024  Score=52.11  Aligned_cols=170  Identities=11%  Similarity=0.032  Sum_probs=111.6

Q ss_pred             hhhHHHHHHHHHHhhcCChhHHHHHHhcc-cHHHHHHhcCCCCHHHHHHHHHHHHHhhcccc--cccchhhhccCcHHHH
Q 008827          221 PRRFEGILLALADMCSKLECCRSRCLSLQ-VLKLVVDALAHDSSDVRSAACMCLRSVSRSIK--NLSAGSFMNETIVIPL  297 (552)
Q Consensus       221 ~~~~~~a~~aL~~l~~~~~~~~~~~~~~~-~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~--~~~~~~~~~~~~i~~L  297 (552)
                      .+.+..++..|......+++.  .+.... +++-+.-.+.+.+..+...++..|..+.....  ..+.......-++|.|
T Consensus        60 ~k~~~~ale~L~~~l~~~~~~--~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~L  137 (266)
T 2of3_A           60 FKQHLAALDSLVRLADTSPRS--LLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYL  137 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHH--HHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhChHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            566666776666654322211  111111 22322323447899999999888887632211  1111101125678999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhh
Q 008827          298 VRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL  377 (552)
Q Consensus       298 v~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~  377 (552)
                      +.-+.++...+|..+-..+..+..-+++.       .+.+.+.+-+++.|..+|..++..+..+....+..      -..
T Consensus       138 veKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~------~~~  204 (266)
T 2of3_A          138 LLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS------PLK  204 (266)
T ss_dssp             HHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG------GGG
T ss_pred             HHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC------ccc
Confidence            99999999999999998887776433332       35677888889999999999999888875432211      123


Q ss_pred             cH---HHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827          378 TA---SLLASLICDPEPSVQEQALALVRNLV  405 (552)
Q Consensus       378 ~~---~~l~~ll~~~~~~v~~~a~~~L~~l~  405 (552)
                      .+   +.+..++.++|..|+..|+.++..+.
T Consensus       205 ~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          205 SLSVEKTVAPFVGDKDVNVRNAAINVLVACF  235 (266)
T ss_dssp             GGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            57   89999999999999999998876554

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.80  E-value=0.029  Score=50.01  Aligned_cols=145  Identities=18%  Similarity=0.078  Sum_probs=106.1

Q ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhc-CCchhH
Q 008827          250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR-LLDDTSTAVQVAALGAISNIVV-DFTTRR  327 (552)
Q Consensus       250 ~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~-~~~~~~  327 (552)
                      .++....+.+++..++|..|+.+|..+ ..          ....++.+-. +-.+++..|++.++.++..++. ..+.  
T Consensus        72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~----------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--  138 (240)
T 3l9t_A           72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SK----------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--  138 (240)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHT-TT----------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred             HHHHHHHHHhCcchHHHHHHHHHHHhc-cC----------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence            466677788888899999999988877 21          1245666666 5568899999999999998874 2221  


Q ss_pred             HHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827          328 STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  407 (552)
Q Consensus       328 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  407 (552)
                            ..++.+...+.++++.+|..|+..+.-.+..  +..+  .--...++.+-.+..+++..||....+.|+.++..
T Consensus       139 ------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          139 ------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             ------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             ------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence                  2677888999999999999998776544331  1000  00122567777788899999999999999999999


Q ss_pred             CcchHHHHHh
Q 008827          408 RINSVEYIFA  417 (552)
Q Consensus       408 ~~~~~~~i~~  417 (552)
                      +|+-+...++
T Consensus       209 ~Pd~V~~~~~  218 (240)
T 3l9t_A          209 FPDLVKIELK  218 (240)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9875544443

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.73  E-value=0.02  Score=57.35  Aligned_cols=244  Identities=16%  Similarity=0.147  Sum_probs=150.8

Q ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc--cchhhhccCcHHHHHHhh--c-------C-CCHHHHHHHHHHHH
Q 008827          250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL--SAGSFMNETIVIPLVRLL--D-------D-TSTAVQVAALGAIS  317 (552)
Q Consensus       250 ~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~--~~~~~~~~~~i~~Lv~lL--~-------~-~~~~v~~~a~~aL~  317 (552)
                      +...++.-|-++.|++|..|+.+|+.+-+....-  +.. -......-.|+-++  +       | .-..||+.|+.+|+
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~-~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQI-RVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCC-CCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceec-cccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            6777888888999999999999999997654321  101 11112222232222  1       1 12479999999999


Q ss_pred             HhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHH
Q 008827          318 NIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQA  397 (552)
Q Consensus       318 nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a  397 (552)
                      .+ ..-++.      ..++..++..+..+.=++|..++-.|..+..-..     .  =.++++.++..|.+.|.+|+..|
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~-----~--Ld~Vv~aVL~GL~D~DDDVRAVA  319 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE-----D--KDGLCRKLVSLLSSPDEDIKLLS  319 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC-----C--HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH-----H--HHHHHHHHHhhcCCcccHHHHHH
Confidence            88 544432      3556666666677777899999999998822111     1  13457788888999999999999


Q ss_pred             HHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchh-HHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHH
Q 008827          398 LALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE-IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCI  476 (552)
Q Consensus       398 ~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~-v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~L  476 (552)
                      +.+|..++  .++.+..       ++..+...|.+..+-. -....+..|+.+...+....          .+...+|.|
T Consensus       320 AetLiPIA--~p~~l~~-------LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~----------~dp~LVPRL  380 (800)
T 3oc3_A          320 AELLCHFP--ITDSLDL-------VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS----------IPPERLKDI  380 (800)
T ss_dssp             HHHHTTSC--CSSTHHH-------HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC----------CCSGGGGGT
T ss_pred             HHHhhhhc--chhhHHH-------HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc----------cChHHHHHH
Confidence            99999988  4444443       3344444444321111 11222333333332111000          013567899


Q ss_pred             HHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHH
Q 008827          477 IKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTAL  541 (552)
Q Consensus       477 v~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al  541 (552)
                      -.+++++-+.||.++..++..+..    +   ..-.       -.++.++-++++++++.+..+.
T Consensus       381 ~PFLRHtITSVR~AVL~TL~tfL~----~---~~LR-------LIFQNILLE~neeIl~lS~~VW  431 (800)
T 3oc3_A          381 FPCFTSPVPEVRTSILNMVKNLSE----E---SIDF-------LVAEVVLIEEKDEIREMAIKLL  431 (800)
T ss_dssp             GGGGTCSSHHHHHHHHHHTTTCCC----H---HHHH-------HHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HhhhcCCcHHHHHHHHHHHHHHHh----h---hHHH-------HHHHHHHhCCcHHHHHHHHHHH
Confidence            999999999999999999988772    1   1111       1344455556778777665554

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.57  E-value=1.4  Score=49.25  Aligned_cols=427  Identities=11%  Similarity=0.049  Sum_probs=212.9

Q ss_pred             ccchHHHHHhhc-CCCCcchHHHHHHHHhhcCC-----hhhHHHHHhcCchHHHHHhhcC------CHHHHHHHHHHHHH
Q 008827           35 EENMEFLLSLLN-NESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLGG------SLIQRDASLESIAT  102 (552)
Q Consensus        35 ~~~i~~l~~ll~-~~~~~~~~~a~~~l~~~~~~-----~~~~~~l~~~g~i~~L~~lL~~------~~~v~~~al~~L~~  102 (552)
                      +++.+....+|. +.++.++..|+.+|.+..+.     +.....-.+...++.+...-.+      +..++.+...++..
T Consensus        59 p~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~  138 (1073)
T 3gjx_A           59 PDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQ  138 (1073)
T ss_dssp             SCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHH
Confidence            345566666665 45678999999999986542     2222233344445555544322      24556666677777


Q ss_pred             HhcC-ChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCc------------chhhhhH--HhHHH
Q 008827          103 IFKN-NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCY------------LQDVGIK--TKLIN  167 (552)
Q Consensus       103 l~~~-~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~------------~~~~~~~--~g~i~  167 (552)
                      ++.. .++.+        .+.++.++.++++ ++.........|..+...-...            .++.+..  ..+++
T Consensus       139 I~k~~~P~~W--------p~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~  209 (1073)
T 3gjx_A          139 ILKQEWPKHW--------PTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQ  209 (1073)
T ss_dssp             HHHHHTTTTC--------TTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhChhhc--------cHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHH
Confidence            7643 23333        4567777777764 3445566777777665531100            0111111  12333


Q ss_pred             HHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHH-HhhhcCCCChhhHHHHHHHHHHhhcCC-hhHHH
Q 008827          168 NLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLY-NHLQKGSLHPRRFEGILLALADMCSKL-ECCRS  243 (552)
Q Consensus       168 ~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~~L~~~~~~~~~~~~a~~aL~~l~~~~-~~~~~  243 (552)
                      .+..++.  .++++...+..++....+.-+-  ..+++.+.++.++ .+|.    ++..+..|+.+|..+...+ +++..
T Consensus       210 ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i--~~i~~~~ll~~L~~~~L~----~~~~r~aA~dcL~eIv~k~~~~~~~  283 (1073)
T 3gjx_A          210 LCQFVMENSQNAPLVHATLETLLRFLNWIPL--GYIFETKLISTLIYKFLN----VPMFRNVSLKCLTEIAGVSVSQYEE  283 (1073)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHHHTSS----SHHHHHHHHHHHHHHHHSCSGGGHH
T ss_pred             HHHHHhcccCCHHHHHHHHHHHHHHHHhcCH--HHhccchHHHHHHHHhcC----ChHHHHHHHHHHHHHHhccccchHH
Confidence            3334443  2334555566777777654332  3456677777773 5443    3678999999999987642 22222


Q ss_pred             HHHh--cccHHHHHHhcC-------------CCCHHHHHHHHHHHHHhhcccccccchhhhcc-C-------cHHHHHHh
Q 008827          244 RCLS--LQVLKLVVDALA-------------HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNE-T-------IVIPLVRL  300 (552)
Q Consensus       244 ~~~~--~~~l~~lv~~L~-------------~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~-~-------~i~~Lv~l  300 (552)
                      .+..  .+.+..+..++.             +.+.+....-+..+..+......   . +... +       ++..++.+
T Consensus       284 ~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~---l-Ie~~p~~~~~l~~~l~~ll~~  359 (1073)
T 3gjx_A          284 QFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQ---L-LEKRLNLREALMEALHYMLLV  359 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHH---H-HHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH---H-HhcCccchHHHHHHHHHHHHH
Confidence            2211  122222222221             22234445555555555433211   1 1111 1       22223444


Q ss_pred             hcCCCHHHHHHHHHHHH----HhhcCC------c-----------hhHHHHH---hhCcHHHHHHhhcCCC---------
Q 008827          301 LDDTSTAVQVAALGAIS----NIVVDF------T-----------TRRSTFI---RLGGVKLLVQLSKSMD---------  347 (552)
Q Consensus       301 L~~~~~~v~~~a~~aL~----nl~~~~------~-----------~~~~~~~---~~g~i~~L~~ll~~~~---------  347 (552)
                      -..++.++.+.+...=.    .+....      .           ..+..+.   =......++.-+..+.         
T Consensus       360 s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~  439 (1073)
T 3gjx_A          360 SEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQ  439 (1073)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSS
T ss_pred             hCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCccc
Confidence            45678888777654322    222111      0           0111111   0123333343333221         


Q ss_pred             -----------HH-----HHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc--CCChhHHHHHHHHHHHhhcCCc
Q 008827          348 -----------ST-----IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDGRI  409 (552)
Q Consensus       348 -----------~~-----v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~  409 (552)
                                 ..     +-..++..+.++.    ++.-..    ..++.+.+.+.  ..++...+.++|+++.++..-.
T Consensus       440 ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~----~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~  511 (1073)
T 3gjx_A          440 GEVVREFMKDTDSINLYKNMRETLVYLTHLD----YVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMH  511 (1073)
T ss_dssp             SCEEEEECSSCHHHHHHHHHHHHHHHHHHHC----HHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSC
T ss_pred             chHHHHHHhhcchHHHHHHHHHHHHHHhcCC----HHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCC
Confidence                       00     1111222222221    111111    12233333333  3468899999999999974432


Q ss_pred             ch-HHHHHhhcCchHHHHHHHhcccC----chhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCC
Q 008827          410 NS-VEYIFAEDGIILDAVGRQLRIAS----KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSND  484 (552)
Q Consensus       410 ~~-~~~i~~~~~~~~~~l~~~L~~~~----~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~  484 (552)
                      +. -+..+..   +++.|..+.....    ++-+....+|+++.++.--..+- ..+        ..++..|.+.+.+++
T Consensus       512 ~~~E~~~Lp~---vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~-~~L--------~~vl~~L~~~m~~~~  579 (1073)
T 3gjx_A          512 EEDEKRFLVT---VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHW-KFL--------KTVVNKLFEFMHETH  579 (1073)
T ss_dssp             HHHHHHHHHH---HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHH--------HHHHHHHHHHTTCCS
T ss_pred             cccccchHHH---HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCH-HHH--------HHHHHHHHHHHhcCC
Confidence            21 2222222   6777777665421    23355557789988764111121 122        355677888889999


Q ss_pred             hhHHHHHHHHHHhhcC
Q 008827          485 SRLRTAAVWAVLNLTC  500 (552)
Q Consensus       485 ~~~~~~a~~~l~~l~~  500 (552)
                      +.++..|+.++..++.
T Consensus       580 ~~vq~aA~~af~~i~~  595 (1073)
T 3gjx_A          580 DGVQDMACDTFIKIAQ  595 (1073)
T ss_dssp             TTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999985

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.55  E-value=0.31  Score=48.09  Aligned_cols=294  Identities=14%  Similarity=0.094  Sum_probs=161.2

Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhh
Q 008827           81 RLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVG  160 (552)
Q Consensus        81 ~L~~lL~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~  160 (552)
                      .++..-+++.+.+.-|..-+....++.|+..        ..++..++.++.+++..||..|.+.|..+++.  ++     
T Consensus        33 ~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~--------~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~-----   97 (507)
T 3u0r_A           33 VILDGVKGGTKEKRLAAQFIPKFFKHFPELA--------DSAINAQLDLCEDEDVSIRRQAIKELPQFATG--EN-----   97 (507)
T ss_dssp             HHHHGGGSCHHHHHHHHHHHHHHGGGCGGGH--------HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TC-----
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhhChhhH--------HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hh-----
Confidence            3455566788889999999999888877774        45778899999999999999999999999885  22     


Q ss_pred             hHHhHHHHHHHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC-C
Q 008827          161 IKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK-L  238 (552)
Q Consensus       161 ~~~g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-~  238 (552)
                       -..+...|+++|+.+ +.-...+-.+|..+...++.        +.+..+...+..+  +..+|+.++..|..=... .
T Consensus        98 -i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~--~e~~Rer~lkFi~~kl~~l~  166 (507)
T 3u0r_A           98 -LPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQG--EDIVRERAIKFLSTKLKTLP  166 (507)
T ss_dssp             -HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHS--CHHHHHHHHHHHHHHGGGSC
T ss_pred             -hhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHccc--chHHHHHHHHHHHHHHhhcc
Confidence             256888999999943 33344444566655544443        3455566556555  367888888877643321 1


Q ss_pred             hhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc----------CCCHHH
Q 008827          239 ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD----------DTSTAV  308 (552)
Q Consensus       239 ~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~----------~~~~~v  308 (552)
                      .+....-.+.-++..+-..|++-+..=-......|..+... +    .    ..+...|+.++.          ..|++.
T Consensus       167 ~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~-~----t----~~g~qeLv~ii~eQa~L~~~f~~sD~e~  237 (507)
T 3u0r_A          167 DEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSL-Q----T----VSGRQQLVELVAEQADLEQTFNPSDPDC  237 (507)
T ss_dssp             TTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGG-S----S----HHHHHHHHHHHHHHHTTTSCCCSSCHHH
T ss_pred             hhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccc-c----C----chHHHHHHHHHHHHHhccCCCCCcCHHH
Confidence            11112223334556666666544321111112333322111 0    0    111233444432          135655


Q ss_pred             HHHHHHHHHHh----hcCCchhH-HHHHhhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhcccCC-hHhHHHHHHhhcHHH
Q 008827          309 QVAALGAISNI----VVDFTTRR-STFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAE-DKCKEEIFMELTASL  381 (552)
Q Consensus       309 ~~~a~~aL~nl----~~~~~~~~-~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~-~~~~~~i~~~~~~~~  381 (552)
                      ...-..++...    +.+....+ -.++-..++|.+-.+-... .+..+..-+.+++.++.... .+.....+. .+++.
T Consensus       238 vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~-~iy~~  316 (507)
T 3u0r_A          238 VDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLR-KLFDK  316 (507)
T ss_dssp             HHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHH-HHHHH
Confidence            55554444433    22221111 1122234666444333322 22377888888888876544 222222222 23445


Q ss_pred             HHhhhcCCC-------------h----hHHHHHHHHHHHhhcCCcc
Q 008827          382 LASLICDPE-------------P----SVQEQALALVRNLVDGRIN  410 (552)
Q Consensus       382 l~~ll~~~~-------------~----~v~~~a~~~L~~l~~~~~~  410 (552)
                      |...+-.+.             +    ...+..+.++..++...|+
T Consensus       317 L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~  362 (507)
T 3u0r_A          317 LLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPD  362 (507)
T ss_dssp             HHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTH
T ss_pred             HHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChh
Confidence            555543211             1    2335566777777766554

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.49  E-value=0.0042  Score=56.69  Aligned_cols=21  Identities=10%  Similarity=0.126  Sum_probs=14.6

Q ss_pred             HHHHHhcCCCCHHHHHHHHHH
Q 008827          252 KLVVDALAHDSSDVRSAACMC  272 (552)
Q Consensus       252 ~~lv~~L~~~~~~v~~~a~~~  272 (552)
                      +.+..+++++++.||..++..
T Consensus       101 ~~L~~ll~D~d~~VR~~aA~~  121 (244)
T 1lrv_A          101 EQLSALMFDEDREVRITVADR  121 (244)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHh
Confidence            446667777788888777663

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.08  E-value=0.17  Score=49.91  Aligned_cols=122  Identities=14%  Similarity=0.090  Sum_probs=81.7

Q ss_pred             hhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHh
Q 008827          221 PRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL  300 (552)
Q Consensus       221 ~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l  300 (552)
                      ++.+.-|...|...-.+-|+....     .+..++.+..+++..+|..|.+.|..+++. +..       ..+...|+++
T Consensus        42 ~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i-------~kiaDvL~Ql  108 (507)
T 3u0r_A           42 TKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENL-------PRVADILTQL  108 (507)
T ss_dssp             HHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhh-------hhHHHHHHHH
Confidence            344444444444444433433222     355566666677788999999999888876 322       3567889999


Q ss_pred             hcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008827          301 LDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF  363 (552)
Q Consensus       301 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  363 (552)
                      |+.+++.-....-.+|..+....+        .+.+..+...+..+++.+|+.++..|..-..
T Consensus       109 Lqtdd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~  163 (507)
T 3u0r_A          109 LQTDDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQGEDIVRERAIKFLSTKLK  163 (507)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGG
T ss_pred             HhccchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHcccchHHHHHHHHHHHHHHh
Confidence            999888888888888887765433        2455566655555789999999998875443

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=95.93  E-value=0.59  Score=43.96  Aligned_cols=200  Identities=10%  Similarity=0.042  Sum_probs=139.3

Q ss_pred             CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCc---chhhhhH-HhHHHHHHHhcCCCCchhchHHHHHHHhhcCCH
Q 008827          120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCY---LQDVGIK-TKLINNLLELLDDPGRVGDEASFAFSSLIAEKE  195 (552)
Q Consensus       120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~---~~~~~~~-~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~  195 (552)
                      .+.+..++..+..-+.+.|..++.++.++.+.....   ..+.+.. ..++..|++-- +++++-..+...|..++.+ +
T Consensus        77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY-e~~diAl~~G~mLRecir~-e  154 (341)
T 1upk_A           77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY-ESPEIALNCGIMLRECIRH-E  154 (341)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG-GSTTTHHHHHHHHHHHHTS-H
T ss_pred             hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh-ccchhHhHHHHHHHHHHHh-H
Confidence            456667777788888999999999888887754321   1111111 12333333322 4456655666666666654 4


Q ss_pred             HHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcc---cHHHHHHhcCCCCHHHHHHHHHH
Q 008827          196 DMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ---VLKLVVDALAHDSSDVRSAACMC  272 (552)
Q Consensus       196 ~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~---~l~~lv~~L~~~~~~v~~~a~~~  272 (552)
                      ...+.+...+.+..+.+++..++  -++...|..++..+-.........+....   +....-.+|.+++--.|..+.+.
T Consensus       155 ~la~~iL~~~~f~~fF~yv~~~~--FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL  232 (341)
T 1upk_A          155 PLAKIILWSEQFYDFFRYVEMST--FDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  232 (341)
T ss_dssp             HHHHHHHHSGGGGHHHHHTTCSS--HHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHhcCCC--chHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence            45566777778888888888764  67888888888888665555555555443   67778889999999999999999


Q ss_pred             HHHhhcc--cccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 008827          273 LRSVSRS--IKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF  323 (552)
Q Consensus       273 L~~ls~~--~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~  323 (552)
                      |+.+-..  .......++.+..-+..++.+|++.+..+|..|...+.-.+.++
T Consensus       233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP  285 (341)
T 1upk_A          233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  285 (341)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence            9998543  23333443456677889999999999999999999998777654

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.89  E-value=0.26  Score=46.12  Aligned_cols=127  Identities=23%  Similarity=0.265  Sum_probs=100.2

Q ss_pred             HhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHH
Q 008827          233 DMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVA  311 (552)
Q Consensus       233 ~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~  311 (552)
                      ++..++.+..+-+++..++..+-..++-++.++..+.++.|...+.. ..++..  --...+|-+++.+. +++.++...
T Consensus       268 ~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa-ksL~~t--~L~e~LPFi~~~i~~h~eDdvvYS  344 (619)
T 3c2g_A          268 GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA-KALAKT--PLENILPFLLRLIEIHPDDEVIYS  344 (619)
T ss_dssp             HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC-GGGGTS--CCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch-HHHhhc--cccccchHHHHHhccCCCcceEEe
Confidence            44456666778889999999999999999999999999999999887 445432  23567888888886 889999999


Q ss_pred             HHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC-------C-------HHHHHHHHHHHHHhc
Q 008827          312 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-------D-------STIRLNALRALRNLI  362 (552)
Q Consensus       312 a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-------~-------~~v~~~a~~aL~~l~  362 (552)
                      ..+.|+|.+.+..+.++..+..|+++.|.......       +       ..+..++++++.|+.
T Consensus       345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFL  409 (619)
T 3c2g_A          345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFL  409 (619)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhhe
Confidence            99999999999888898888899999988764331       1       234455666776653

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.72  E-value=3  Score=47.56  Aligned_cols=220  Identities=13%  Similarity=0.051  Sum_probs=113.4

Q ss_pred             CCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcCCHHHHHHHHHHHHHHhcCChh-------hhhhhccccCCc
Q 008827           49 SENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPE-------VVSQFVGPDTGR  121 (552)
Q Consensus        49 ~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~~~~v~~~al~~L~~l~~~~~~-------~~~~~~~~~~~~  121 (552)
                      ...++...+.+++.+.+..-...+   -..++.|++++++++..++.++.+|..++++-..       ....+.+. -..
T Consensus       109 ~~~vr~kla~~la~Ia~~d~p~~W---p~ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~-l~~  184 (1204)
T 3a6p_A          109 ENHIKDALSRIVVEMIKREWPQHW---PDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQT-LTQ  184 (1204)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSTTTC---TTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHH-HHH
T ss_pred             cHHHHHHHHHHHHHHHHHhCcccc---hHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH-HHH
Confidence            345667777777776532100000   1345677777777666678899999998754111       00000000 001


Q ss_pred             cHHHHH----HHHhc-------------------CChhhHHHHHHHHHHHhhhCCCcchhhhhHH--hHHHHHHHhcCCC
Q 008827          122 TLSCII----EIVKD-------------------RFARTRLLASLCLIVIRNASPCYLQDVGIKT--KLINNLLELLDDP  176 (552)
Q Consensus       122 ~l~~l~----~ll~~-------------------~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~--g~i~~Lv~ll~~~  176 (552)
                      .++.++    ..+++                   ++..++..+..++.+....-+   ...+...  ..++.+..++. +
T Consensus       185 ~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~---~~~i~~~~~~ll~~l~~~l~-~  260 (1204)
T 3a6p_A          185 NMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS---MSHITAENCKLLEILCLLLN-E  260 (1204)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC---HHHHHTTTSHHHHHHHHGGG-C
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC---HHHHHhccchHHHHHHHHcC-C
Confidence            122332    22322                   233456667777765544322   1112222  37777777665 4


Q ss_pred             CchhchHHHHHHHhhcCC--HHHHHHHHH---hCcHHHHHHhhhcC------CCChhhHHHHHHHHHHhhcCChhHHHHH
Q 008827          177 GRVGDEASFAFSSLIAEK--EDMQKLAFE---VNGVDKLYNHLQKG------SLHPRRFEGILLALADMCSKLECCRSRC  245 (552)
Q Consensus       177 ~~v~~~a~~~L~~l~~~~--~~~~~~~~~---~~~i~~L~~~L~~~------~~~~~~~~~a~~aL~~l~~~~~~~~~~~  245 (552)
                      ++++..|+.+|..+.+..  +..+..++.   ...+..++......      +.+.+..+...+.+..++.   .....+
T Consensus       261 ~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~l~~l~  337 (1204)
T 3a6p_A          261 QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---QLCALL  337 (1204)
T ss_dssp             TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            678899999999998754  222111111   11233445443211      1123445555555555542   122111


Q ss_pred             Hh----------cccHHHHHHhcCCCCHHHHHHHHHHHHHhhcc
Q 008827          246 LS----------LQVLKLVVDALAHDSSDVRSAACMCLRSVSRS  279 (552)
Q Consensus       246 ~~----------~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~  279 (552)
                      .+          .++++.++.++.+++..+-..++..-..+.+.
T Consensus       338 ~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          338 GADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             hccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            11          24788889899888888877777655545554

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=95.71  E-value=1.5  Score=49.26  Aligned_cols=171  Identities=13%  Similarity=0.157  Sum_probs=111.5

Q ss_pred             cHHHHHHhcCC----CCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHh----hcCCCHHHHHHHHHHHHHhhc
Q 008827          250 VLKLVVDALAH----DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL----LDDTSTAVQVAALGAISNIVV  321 (552)
Q Consensus       250 ~l~~lv~~L~~----~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l----L~~~~~~v~~~a~~aL~nl~~  321 (552)
                      .+..+..++++    .++.++..+..+++.|.+..-... . .+....++.+.+.    +...+.+-+..++.+|+|+-.
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~-~-~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~  469 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT-V-SCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ  469 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC-S-SCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccC-C-CCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence            45666667764    466788888888877764311000 0 1222335555544    456678888999999999864


Q ss_pred             CCchhHHHHHhhCcHHHHHHhhcC-------CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhh--cCCChh
Q 008827          322 DFTTRRSTFIRLGGVKLLVQLSKS-------MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI--CDPEPS  392 (552)
Q Consensus       322 ~~~~~~~~~~~~g~i~~L~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll--~~~~~~  392 (552)
                        +         +.++.|..++..       ....+|..|++||.++.... |+        .+-+.++++.  ...+++
T Consensus       470 --p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p~--------~v~~il~~i~~n~~e~~E  529 (1056)
T 1lsh_A          470 --P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PR--------KVQEIVLPIFLNVAIKSE  529 (1056)
T ss_dssp             --G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HH--------HHHHHHHHHHHCTTSCHH
T ss_pred             --h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-hH--------HHHHHHHHHhcCCCCChH
Confidence              2         356677777642       24678999999999997632 21        2344566766  457788


Q ss_pred             HHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCCh
Q 008827          393 VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE  454 (552)
Q Consensus       393 v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~  454 (552)
                      ++..|+..|-.   .+|+. .        .+..+...+..+++.+|.......|.+++....
T Consensus       530 vRiaA~~~Lm~---t~P~~-~--------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~  579 (1056)
T 1lsh_A          530 LRIRSCIVFFE---SKPSV-A--------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN  579 (1056)
T ss_dssp             HHHHHHHHHHH---TCCCH-H--------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHH---HCcCH-H--------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence            99888777633   22321 0        456666777777888899999999999998554

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.43  E-value=0.54  Score=41.89  Aligned_cols=145  Identities=14%  Similarity=0.002  Sum_probs=100.5

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHh-hhcCCChhHHHHHHHHHHHhhc-CCcchH
Q 008827          335 GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS-LICDPEPSVQEQALALVRNLVD-GRINSV  412 (552)
Q Consensus       335 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~-ll~~~~~~v~~~a~~~L~~l~~-~~~~~~  412 (552)
                      .++....+.+++...+|..|+..|+.+ . ..         ...++.+.. +..+++..|++.+..+++.++. .+++. 
T Consensus        72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~-~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-  139 (240)
T 3l9t_A           72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S-KD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-  139 (240)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHT-T-TS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-
T ss_pred             HHHHHHHHHhCcchHHHHHHHHHHHhc-c-Cc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-
Confidence            345555677778889999999988877 2 11         124566666 6678899999999999999985 44432 


Q ss_pred             HHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHH
Q 008827          413 EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAV  492 (552)
Q Consensus       413 ~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~  492 (552)
                               .++.+.....+ +++.|+..+.-.+.-.+.. +... .-        ...+++.|..+..+++.-||+..+
T Consensus       140 ---------~l~~~~~W~~d-~n~~VRR~Ase~~rpW~~~-~~~k-~d--------p~~ll~iL~~L~~D~s~yVrKSVa  199 (240)
T 3l9t_A          140 ---------ALPIIDEWLKS-SNLHTRRAATEGLRIWTNR-PYFK-EN--------PNEAIRRIADLKEDVSEYVRKSVG  199 (240)
T ss_dssp             ---------THHHHHHHHHC-SSHHHHHHHHHHTCSGGGS-TTTT-TC--------HHHHHHHHHTTTTCSCHHHHHHHH
T ss_pred             ---------HHHHHHHHhcC-CCHHHHHHHHHhhHHHhcc-chhh-cC--------HHHHHHHHHHhcCChHHHHHHHHH
Confidence                     45666666666 8999999888876543322 1000 00        123456777788889999999999


Q ss_pred             HHHHhhcCCCCCCCHHHHHHHHH
Q 008827          493 WAVLNLTCSSSPGSSGRLVKLHD  515 (552)
Q Consensus       493 ~~l~~l~~~~~~~~~~~~~~l~~  515 (552)
                      |.|..++.    ..++.+..+++
T Consensus       200 n~LrD~SK----~~Pd~V~~~~~  218 (240)
T 3l9t_A          200 NALRDISK----KFPDLVKIELK  218 (240)
T ss_dssp             HHHHHHHT----TCHHHHHHHHH
T ss_pred             HHHHHHhh----hCHHHHHHHHH
Confidence            99999995    45666555543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.02  E-value=1.7  Score=40.83  Aligned_cols=178  Identities=11%  Similarity=0.020  Sum_probs=105.9

Q ss_pred             hHHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHH----HHHHhhhcCCCChhhHHHHHHHHHHhhcCCh
Q 008827          164 KLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVD----KLYNHLQKGSLHPRRFEGILLALADMCSKLE  239 (552)
Q Consensus       164 g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~----~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~  239 (552)
                      ..+..+.++++.+.+.+.-+...+.-++. .+.......+.+.-.    .+...+... ..+..+.-++++++|+-. ++
T Consensus       103 ~~l~~l~kil~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~-~~p~n~ml~lR~l~NlF~-~~  179 (304)
T 3ebb_A          103 QQLQILWKAINCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPK-GKPANQLLALRTFCNCFV-GQ  179 (304)
T ss_dssp             HHHHHHHHHHTSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTT-SCHHHHHHHHHHHHHGGG-SH
T ss_pred             HHHHHHHHHHcCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCC-CChHHHHHHHHHHHHccC-Cc
Confidence            35667777776555556666665554443 343333333322222    233433332 235568889999999875 45


Q ss_pred             hHHHHHHhc--ccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHH
Q 008827          240 CCRSRCLSL--QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAI  316 (552)
Q Consensus       240 ~~~~~~~~~--~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL  316 (552)
                      ..+..+...  .+++.+...+.+.+..+|.+++.++.|++-...+.+.. -....++..+..+++ ..|.|....+..||
T Consensus       180 ~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~-~~~~~ll~~l~~il~~~~d~EalyR~LvAL  258 (304)
T 3ebb_A          180 AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI-EGKAQCLSLISTILEVVQDLEATFRLLVAL  258 (304)
T ss_dssp             HHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc-hHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            566655542  46677777777789999999999999997542211111 011123444455554 46899999999999


Q ss_pred             HHhhcCCchhHHHHHhhCcHHHHHHhhcC
Q 008827          317 SNIVVDFTTRRSTFIRLGGVKLLVQLSKS  345 (552)
Q Consensus       317 ~nl~~~~~~~~~~~~~~g~i~~L~~ll~~  345 (552)
                      ++++...+..++....-|+-..+-++...
T Consensus       259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            99997655544433334555544455554

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=94.75  E-value=2.8  Score=39.41  Aligned_cols=203  Identities=13%  Similarity=0.111  Sum_probs=137.7

Q ss_pred             HHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccch---hhhc-cCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008827          243 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAG---SFMN-ETIVIPLVRLLDDTSTAVQVAALGAISN  318 (552)
Q Consensus       243 ~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~---~~~~-~~~i~~Lv~lL~~~~~~v~~~a~~aL~n  318 (552)
                      ..+...+.+..++..|..=+.+.|+.++.++.++-+.....+..   ++.. ..++..|+...  +++++-..+-..|..
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRe  149 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHH
Confidence            34556688999999999999999999999999987653222111   1111 22222333333  344555555566665


Q ss_pred             hhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHh---hcHHHHHhhhcCCChhHHH
Q 008827          319 IVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME---LTASLLASLICDPEPSVQE  395 (552)
Q Consensus       319 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~---~~~~~l~~ll~~~~~~v~~  395 (552)
                      ... ++...+.++..+.+-.+.++.+.++.++..-|..++..+... ....-.+.+..   .......+|+.+++.-.+.
T Consensus       150 cir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR  227 (341)
T 1upk_A          150 CIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  227 (341)
T ss_dssp             HHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc-cHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence            554 555666788888888999999999999999999999887542 22222333332   2456677899999999999


Q ss_pred             HHHHHHHHhhcCCcc---hHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCC
Q 008827          396 QALALVRNLVDGRIN---SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATG  452 (552)
Q Consensus       396 ~a~~~L~~l~~~~~~---~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~  452 (552)
                      +++.+|+.+......   ...|+-+..  -+..++.+|++ +...|+-.|.++.--+.+.
T Consensus       228 QSlKLLgelLldr~N~~vM~~Yis~~~--nLkl~M~LL~d-~sk~Iq~EAFhVFKvFVAN  284 (341)
T 1upk_A          228 QSLKLLGELLLDRHNFTIMTKYISKPE--NLKLMMNLLRD-KSRNIQFEAFHVFKVFVAN  284 (341)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTTCHH--HHHHHHHHTTC-SCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCchHHHHHHHHhCCHH--HHHHHHHHhcC-chhchhhhhhhheeeeeeC
Confidence            999999999865221   112222222  46777788888 8889999999988877663

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=94.15  E-value=3.1  Score=37.42  Aligned_cols=185  Identities=14%  Similarity=0.163  Sum_probs=117.4

Q ss_pred             hhhHHHHHHHHHHhhcCChhHHHHHH-hcccHHHHHH-------hcCCCC--HHHH---HHHHHHHHHhhcccccccchh
Q 008827          221 PRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVD-------ALAHDS--SDVR---SAACMCLRSVSRSIKNLSAGS  287 (552)
Q Consensus       221 ~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~lv~-------~L~~~~--~~v~---~~a~~~L~~ls~~~~~~~~~~  287 (552)
                      |+.|+.|+..|+.=-..-++..-.+. ..|.+..+++       .+..++  ...-   ..|...+..++.+ +..|.. 
T Consensus        15 p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~-   92 (268)
T 2fv2_A           15 PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA-   92 (268)
T ss_dssp             TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH-
T ss_pred             chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH-
Confidence            45688887666653322233333333 3354544433       222221  2222   3344455566665 667766 


Q ss_pred             hhccCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhhc-CCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008827          288 FMNETIVIPLVRLLDDT-----STAVQVAALGAISNIVV-DFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL  361 (552)
Q Consensus       288 ~~~~~~i~~Lv~lL~~~-----~~~v~~~a~~aL~nl~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l  361 (552)
                      |..+.+.-.|.-+|...     .+-+|-...+.++.++. +.++....+.+.+.+|..++.++.+++-.+..|...+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            88888888888888633     35788899999999875 3455566788999999999999999999999999988887


Q ss_pred             cccCCh-------HhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827          362 IFLAED-------KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  407 (552)
Q Consensus       362 ~~~~~~-------~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  407 (552)
                      ..+..-       ..|-..+..-.-..+.++..++++.+....+++...++++
T Consensus       173 L~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn  225 (268)
T 2fv2_A          173 LLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN  225 (268)
T ss_dssp             HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred             hccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence            542110       0111111111122333556788999999999999888876

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=93.68  E-value=3  Score=37.47  Aligned_cols=148  Identities=15%  Similarity=0.160  Sum_probs=102.1

Q ss_pred             HHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHh
Q 008827          310 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-----DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS  384 (552)
Q Consensus       310 ~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~  384 (552)
                      .+|...+-.++. .++-+..+++++.--.|..++...     .+.+|..+++.++.+....+++.-.-+++...+|..++
T Consensus        74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr  152 (268)
T 2fv2_A           74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR  152 (268)
T ss_dssp             HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence            344444445554 566677889888777777777654     36799999999999998888888888888889999999


Q ss_pred             hhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc------CchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHH
Q 008827          385 LICDPEPSVQEQALALVRNLVDGRINSVEYIFAED------GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKE  458 (552)
Q Consensus       385 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~------~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~  458 (552)
                      .+..++.--+.-|..++..+..++. ...++....      +.++..++..+...+++....+...+-..++. ++..++
T Consensus       153 ime~GselSKtvAtfIlqKIL~dd~-GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar~  230 (268)
T 2fv2_A          153 IMESGSELSKTVATFILQKILLDDT-GLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD-NPRARE  230 (268)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHSHH-HHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHHhccch-hHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHHH
Confidence            9999999999999988888876532 333332211      01333333333344677777777777777775 343444


Q ss_pred             HH
Q 008827          459 AV  460 (552)
Q Consensus       459 ~i  460 (552)
                      .+
T Consensus       231 aL  232 (268)
T 2fv2_A          231 AL  232 (268)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.35  E-value=4.3  Score=36.41  Aligned_cols=158  Identities=16%  Similarity=0.158  Sum_probs=92.9

Q ss_pred             CChhHHHHHHhcccHHHHHHhcCC----C-------CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCC
Q 008827          237 KLECCRSRCLSLQVLKLVVDALAH----D-------SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS  305 (552)
Q Consensus       237 ~~~~~~~~~~~~~~l~~lv~~L~~----~-------~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~  305 (552)
                      .+..+.+.+ ..+|+..|+.+|..    +       +......+..||..+.......... +...+++..+...|.+++
T Consensus        32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~v-l~~~~~i~~l~~~L~s~~  109 (233)
T 2f31_A           32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM-LETEEGILLLVRAMDPAV  109 (233)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHH-HTSSSHHHHHHTTCCTTS
T ss_pred             CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHH-HcCcHHHHHHHHHhCCCC
Confidence            445666677 56787777777752    1       3466778888998886653222222 345678899999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCc-hh-HHHHH----------hhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCC-hHh--
Q 008827          306 TAVQVAALGAISNIVVDFT-TR-RSTFI----------RLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAE-DKC--  369 (552)
Q Consensus       306 ~~v~~~a~~aL~nl~~~~~-~~-~~~~~----------~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~-~~~--  369 (552)
                      +.++..+...|.-++...+ .. -..++          +..-...+++.+++ .+.+.+..++..+..+....+ .+.  
T Consensus       110 ~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~  189 (233)
T 2f31_A          110 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV  189 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            9999999888877765432 12 22222          12244556666663 456666666665555554322 222  


Q ss_pred             --HHHHHHhhcHHHHHhhhcCCChhHHHH
Q 008827          370 --KEEIFMELTASLLASLICDPEPSVQEQ  396 (552)
Q Consensus       370 --~~~i~~~~~~~~l~~ll~~~~~~v~~~  396 (552)
                        |.++...|..+.+-.+=...++++..+
T Consensus       190 ~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q  218 (233)
T 2f31_A          190 HIRSELMRLGLHQVLQELREIENEDMKVQ  218 (233)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence              334444454444443333445554443

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=93.31  E-value=0.95  Score=50.75  Aligned_cols=136  Identities=15%  Similarity=0.193  Sum_probs=85.0

Q ss_pred             cHHHHHHhhcC----CCHHHHHHHHHHHHHhccc---CChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC
Q 008827          335 GVKLLVQLSKS----MDSTIRLNALRALRNLIFL---AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  407 (552)
Q Consensus       335 ~i~~L~~ll~~----~~~~v~~~a~~aL~~l~~~---~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  407 (552)
                      .+..+..++++    .++.++..++.+++++...   ..+.|..+++. -..+.+.+.+...+.+-+.-++.+|+|+.. 
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-  469 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQ-  469 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence            44566666665    4677888888888877541   11112212111 123345555667778888889999999964 


Q ss_pred             CcchHHHHHhhcCchHHHHHHHhcc------cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhh-
Q 008827          408 RINSVEYIFAEDGIILDAVGRQLRI------ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL-  480 (552)
Q Consensus       408 ~~~~~~~i~~~~~~~~~~l~~~L~~------~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL-  480 (552)
                       +.           .++.+.+.+..      +....++..|+++|.+++...+....               +.+.++. 
T Consensus       470 -p~-----------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~---------------~il~~i~~  522 (1056)
T 1lsh_A          470 -PN-----------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ---------------EIVLPIFL  522 (1056)
T ss_dssp             -GG-----------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH---------------HHHHHHHH
T ss_pred             -hh-----------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH---------------HHHHHHhc
Confidence             32           45555555532      12346888999999999875442222               3455556 


Q ss_pred             -cCCChhHHHHHHHHHHhhc
Q 008827          481 -QSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       481 -~~~~~~~~~~a~~~l~~l~  499 (552)
                       ...++++|.+|+..|..-.
T Consensus       523 n~~e~~EvRiaA~~~Lm~t~  542 (1056)
T 1lsh_A          523 NVAIKSELRIRSCIVFFESK  542 (1056)
T ss_dssp             CTTSCHHHHHHHHHHHHHTC
T ss_pred             CCCCChHHHHHHHHHHHHHC
Confidence             3467899999998886544

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.30  E-value=6.4  Score=38.27  Aligned_cols=157  Identities=15%  Similarity=0.147  Sum_probs=96.1

Q ss_pred             CChhHHHHHHhcccHHHHHHhcC-----------CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCC
Q 008827          237 KLECCRSRCLSLQVLKLVVDALA-----------HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS  305 (552)
Q Consensus       237 ~~~~~~~~~~~~~~l~~lv~~L~-----------~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~  305 (552)
                      .+..+.+.+. .+|+..|+..|.           ..+...+..+..||+.+-......... +.....+..++..+.++.
T Consensus        98 ~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~v-l~~~~~i~~l~~~L~s~~  175 (383)
T 3eg5_B           98 HPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM-LETEEGILLLVRAMDPAV  175 (383)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHH-HTCSSHHHHHHHTCCTTS
T ss_pred             CccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHH-HcChHHHHHHHHHhCCCc
Confidence            4456666776 677888888774           123577888889999886653222222 455678999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCc-hh-HHHHH----------hhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCC-hHhH-
Q 008827          306 TAVQVAALGAISNIVVDFT-TR-RSTFI----------RLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAE-DKCK-  370 (552)
Q Consensus       306 ~~v~~~a~~aL~nl~~~~~-~~-~~~~~----------~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~-~~~~-  370 (552)
                      +.++..+...|.-++.... .. -..++          +..-...++..+.+ .+.+.+..++..+..+....+ .+.| 
T Consensus       176 ~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~  255 (383)
T 3eg5_B          176 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV  255 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            9999999999988876443 21 22222          22345667777776 466777766666655554322 2233 


Q ss_pred             ---HHHHHhhcHHHHHhhhc-CCChhHHHH
Q 008827          371 ---EEIFMELTASLLASLIC-DPEPSVQEQ  396 (552)
Q Consensus       371 ---~~i~~~~~~~~l~~ll~-~~~~~v~~~  396 (552)
                         .++...|..+.+-+ ++ ..++++..+
T Consensus       256 ~lR~ef~~~Gl~~il~~-lr~~~~~~L~~Q  284 (383)
T 3eg5_B          256 HIRSELMRLGLHQVLQE-LREIENEDMKVQ  284 (383)
T ss_dssp             HHHHHHHHTTHHHHHHH-HTTSCCHHHHHH
T ss_pred             HHHHHHHHCChHHHHHH-HhcCCChhHHHH
Confidence               34444454444444 54 345554443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=92.72  E-value=7  Score=37.98  Aligned_cols=121  Identities=15%  Similarity=0.172  Sum_probs=87.7

Q ss_pred             hhccCcHHHHHHhhc-----------CCCHHHHHHHHHHHHHhhcCCchhHHHHHh-hCcHHHHHHhhcCCCHHHHHHHH
Q 008827          288 FMNETIVIPLVRLLD-----------DTSTAVQVAALGAISNIVVDFTTRRSTFIR-LGGVKLLVQLSKSMDSTIRLNAL  355 (552)
Q Consensus       288 ~~~~~~i~~Lv~lL~-----------~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~  355 (552)
                      |. .+++..|+.+|.           ..+...+..+..+|..+.. +......++. .+.+..+...+.+.++.++..++
T Consensus       106 F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~al  183 (383)
T 3eg5_B          106 FG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAA  183 (383)
T ss_dssp             HH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHH
T ss_pred             HH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHH
Confidence            55 567788888774           2245788899999988884 4445555554 46889999999999999999999


Q ss_pred             HHHHHhcccCChHh-HHHHHHh----------hcHHHHHhhhcC-CChhHHHHHHHHHHHhhcCCcc
Q 008827          356 RALRNLIFLAEDKC-KEEIFME----------LTASLLASLICD-PEPSVQEQALALVRNLVDGRIN  410 (552)
Q Consensus       356 ~aL~~l~~~~~~~~-~~~i~~~----------~~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~  410 (552)
                      ..|..+|...+++. ...++++          .-+..++..+.+ .+.+.+..++.++..+..+.++
T Consensus       184 eLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~d  250 (383)
T 3eg5_B          184 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE  250 (383)
T ss_dssp             HHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCC
Confidence            99999887654332 4444443          235667777875 6788888888888888877554

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=92.64  E-value=4.9  Score=37.65  Aligned_cols=187  Identities=14%  Similarity=0.107  Sum_probs=106.1

Q ss_pred             cchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchH----HHHHhhcC--CHHHHHHHHHHHHHHhcCChh
Q 008827           36 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLK----RLTSLLGG--SLIQRDASLESIATIFKNNPE  109 (552)
Q Consensus        36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~----~L~~lL~~--~~~v~~~al~~L~~l~~~~~~  109 (552)
                      ..+..+.+++ +=..+.+.-+.+++......+.....+.+.+.-.    .+...+.+  .+..+..++++++|+... +.
T Consensus       103 ~~l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~  180 (304)
T 3ebb_A          103 QQLQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QA  180 (304)
T ss_dssp             HHHHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HH
T ss_pred             HHHHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-ch
Confidence            3556666666 3334566777777777665555444444432222    23344433  355688899999996544 34


Q ss_pred             hhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC--CCCchhchHHHHH
Q 008827          110 VVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAF  187 (552)
Q Consensus       110 ~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~--~~~~v~~~a~~~L  187 (552)
                      ....+... ....+..+...+.+.+..+|.+++..+.|++...... .+.-....++..+..++.  ++.+....+..+|
T Consensus       181 g~~~l~~~-~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~-~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL  258 (304)
T 3ebb_A          181 GQKLMMSQ-RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD-HNIEGKAQCLSLISTILEVVQDLEATFRLLVAL  258 (304)
T ss_dssp             HHHHHHHT-HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHHH-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc-CCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            43333221 1223344444555778999999999999998743110 011112335566666665  3456778888999


Q ss_pred             HHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHH
Q 008827          188 SSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGI  227 (552)
Q Consensus       188 ~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a  227 (552)
                      +++...+.+....+-.. ++...++-+.+.+.++++.+.+
T Consensus       259 GtL~~~~~~~~~lak~l-~~~~~v~~~~~~~~~~kv~~~~  297 (304)
T 3ebb_A          259 GTLISDDSNAVQLAKSL-GVDSQIKKYSSVSEPAKVSECC  297 (304)
T ss_dssp             HHHHTTCHHHHHHHHHT-THHHHGGGGGGCCSSHHHHHHH
T ss_pred             HHHHhCChhHHHHHHHc-CHHHHHHHHHhCCCchhHHHHH
Confidence            99998776654433333 3444444344443445555543

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=91.50  E-value=6.7  Score=35.11  Aligned_cols=149  Identities=19%  Similarity=0.221  Sum_probs=90.9

Q ss_pred             HhCcHHHHHHhhhcC---------CCChhhHHHHHHHHHHhhcCChhHHHHHH-hcccHHHHHHhcCCCCHHHHHHHHHH
Q 008827          203 EVNGVDKLYNHLQKG---------SLHPRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVDALAHDSSDVRSAACMC  272 (552)
Q Consensus       203 ~~~~i~~L~~~L~~~---------~~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~lv~~L~~~~~~v~~~a~~~  272 (552)
                      ..+|+..|+++|...         ..+......++.+|..+.... .-...+. ..+.+..+...|.++++.+|..+...
T Consensus        41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~-~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leL  119 (233)
T 2f31_A           41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-FGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL  119 (233)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSH-HHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCCh-HHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHH
Confidence            356666666655431         112455678899999987543 3334444 45689999999999999999999998


Q ss_pred             HHHhhccccc-c-cch---------hhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCch------hHHHHHhhC
Q 008827          273 LRSVSRSIKN-L-SAG---------SFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTT------RRSTFIRLG  334 (552)
Q Consensus       273 L~~ls~~~~~-~-~~~---------~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~------~~~~~~~~g  334 (552)
                      |..++...+. - ...         ...+..-..++++.+. +.+.+.+.++...+-.+....++      .|..+...|
T Consensus       120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G  199 (233)
T 2f31_A          120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG  199 (233)
T ss_dssp             HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence            8888765331 1 111         0123334556788776 45667776666666555554433      233455566


Q ss_pred             cHHHHHHhhcCCCHHHHH
Q 008827          335 GVKLLVQLSKSMDSTIRL  352 (552)
Q Consensus       335 ~i~~L~~ll~~~~~~v~~  352 (552)
                      ..+.+-.+-...++.+..
T Consensus       200 l~~il~~l~~~~~~~L~~  217 (233)
T 2f31_A          200 LHQVLQELREIENEDMKV  217 (233)
T ss_dssp             HHHHHHHHHHCCCHHHHH
T ss_pred             hHHHHHHHhccCCHHHHH
Confidence            666665554445555433

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=90.06  E-value=30  Score=39.36  Aligned_cols=269  Identities=14%  Similarity=0.052  Sum_probs=140.9

Q ss_pred             chHHHHHhh--cCCCCcchHHHHHHHHhhcCC-----hhhHHHHHhcCchHHHHHhhc----CCHHHHHHHHHHHHHHhc
Q 008827           37 NMEFLLSLL--NNESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLG----GSLIQRDASLESIATIFK  105 (552)
Q Consensus        37 ~i~~l~~ll--~~~~~~~~~~a~~~l~~~~~~-----~~~~~~l~~~g~i~~L~~lL~----~~~~v~~~al~~L~~l~~  105 (552)
                      ....+...|  .+.+..++..|+.+|.+..+.     ++......+...++.+...-.    .+..+|.+...++..++.
T Consensus        46 ~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~  125 (1204)
T 3a6p_A           46 ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIK  125 (1204)
T ss_dssp             THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHH
Confidence            433444433  345677899999999886422     222222333334444443321    245788888888888775


Q ss_pred             C-ChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhC--CCcc---hh-----hhhH--HhHHHHHHHh
Q 008827          106 N-NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNAS--PCYL---QD-----VGIK--TKLINNLLEL  172 (552)
Q Consensus       106 ~-~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~--~~~~---~~-----~~~~--~g~i~~Lv~l  172 (552)
                      . .++.+        .+.++.++.++++ ++..+..+..+|..+....  ....   +.     .+..  ..+++.+..+
T Consensus       126 ~d~p~~W--------p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~i  196 (1204)
T 3a6p_A          126 REWPQHW--------PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNT  196 (1204)
T ss_dssp             HHSTTTC--------TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HhCcccc--------hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 23333        4677888888876 5566778888888876531  0000   00     0000  1233333333


Q ss_pred             cCCC--------------------CchhchHHHHHHHhhcCCHHHHHHHHHhC--cHHHHHHhhhcCCCChhhHHHHHHH
Q 008827          173 LDDP--------------------GRVGDEASFAFSSLIAEKEDMQKLAFEVN--GVDKLYNHLQKGSLHPRRFEGILLA  230 (552)
Q Consensus       173 l~~~--------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~~L~~~~~~~~~~~~a~~a  230 (552)
                      +.+.                    ..+...+..++.+....-+.  ..+.+..  .++.++.++..    +.++..|+.+
T Consensus       197 L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~~----~~lr~~A~ec  270 (1204)
T 3a6p_A          197 LQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLNE----QELQLGAAEC  270 (1204)
T ss_dssp             HHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTSHHHHHHHHGGGC----TTTHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccchHHHHHHHHcCC----HHHHHHHHHH
Confidence            3210                    11333444455444332211  1223332  45666665442    5689999999


Q ss_pred             HHHhhcCC--hhHHHHHHh---cccHHHHHHhcC--------CCCHHHHHHHHHHHHHhhcccccc-------cchhhhc
Q 008827          231 LADMCSKL--ECCRSRCLS---LQVLKLVVDALA--------HDSSDVRSAACMCLRSVSRSIKNL-------SAGSFMN  290 (552)
Q Consensus       231 L~~l~~~~--~~~~~~~~~---~~~l~~lv~~L~--------~~~~~v~~~a~~~L~~ls~~~~~~-------~~~~~~~  290 (552)
                      |..+....  +..+..++.   ..++..++....        +.+.++.+..+.++..+......+       ... -.-
T Consensus       271 L~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~-~~l  349 (1204)
T 3a6p_A          271 LLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETP-SNF  349 (1204)
T ss_dssp             HHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCC-TTH
T ss_pred             HHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccCh-hHH
Confidence            99998743  222222221   112334444431        224567777777777765221100       000 012


Q ss_pred             cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 008827          291 ETIVIPLVRLLDDTSTAVQVAALGAISNIVV  321 (552)
Q Consensus       291 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~  321 (552)
                      .++++.++.+..+++..+-..+...-..+..
T Consensus       350 ~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~  380 (1204)
T 3a6p_A          350 GKYLESFLAFTTHPSQFLRSSTQMTWGALFR  380 (1204)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence            3678888888888888888777765554544

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=89.07  E-value=11  Score=36.78  Aligned_cols=105  Identities=14%  Similarity=0.155  Sum_probs=74.9

Q ss_pred             CHHHHHHHHHHHHHhhcCCchhHHHHHh-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHh-HHHHHHh------
Q 008827          305 STAVQVAALGAISNIVVDFTTRRSTFIR-LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC-KEEIFME------  376 (552)
Q Consensus       305 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~i~~~------  376 (552)
                      +...+..++.+|..++. .......++. .+++..+...+.++++.++..++..|..+|...+++. ...++++      
T Consensus        71 d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~  149 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  149 (386)
T ss_dssp             HHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence            46778888999988874 4444445544 4688999999999999999999998888887554332 4444432      


Q ss_pred             ----hcHHHHHhhhc-CCChhHHHHHHHHHHHhhcCCcc
Q 008827          377 ----LTASLLASLIC-DPEPSVQEQALALVRNLVDGRIN  410 (552)
Q Consensus       377 ----~~~~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~  410 (552)
                          .-+..++..+. +.+.+.+..++.++..+..+.++
T Consensus       150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~d  188 (386)
T 2bnx_A          150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE  188 (386)
T ss_dssp             HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCC
Confidence                13445666665 56778888888888888877654

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=88.66  E-value=16  Score=34.38  Aligned_cols=155  Identities=15%  Similarity=0.211  Sum_probs=93.4

Q ss_pred             HhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHH
Q 008827          318 NIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQA  397 (552)
Q Consensus       318 nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a  397 (552)
                      |+..+.++...-++...++..+......++.++.......|-..+...                                
T Consensus       268 ~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDak--------------------------------  315 (619)
T 3c2g_A          268 GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAK--------------------------------  315 (619)
T ss_dssp             HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCG--------------------------------
T ss_pred             HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchH--------------------------------
Confidence            454455566666777777777777777777776666665554443211                                


Q ss_pred             HHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHH
Q 008827          398 LALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCII  477 (552)
Q Consensus       398 ~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv  477 (552)
                           .+|...-.       +   .++.+.+.+.-+++++|..+..+.|+|..+......+..+.       .++++.|.
T Consensus       316 -----sL~~t~L~-------e---~LPFi~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~-------~nAI~LLh  373 (619)
T 3c2g_A          316 -----ALAKTPLE-------N---ILPFLLRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIR-------SNAIFLLH  373 (619)
T ss_dssp             -----GGGTSCCT-------T---HHHHHHHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHH-------TTHHHHHH
T ss_pred             -----HHhhcccc-------c---cchHHHHHhccCCCcceEEecchHHHHHHhcccchHHHHhc-------cCcHHHHH
Confidence                 12211110       0   56777776766688889999999999999877655555554       68888877


Q ss_pred             HhhcC-------CChhHHHHHHHHHHhhc---------CC-C------CCC--CHHHHHHHHHCCcHHHHHhhh
Q 008827          478 KFLQS-------NDSRLRTAAVWAVLNLT---------CS-S------SPG--SSGRLVKLHDAGIVSHVKNMV  526 (552)
Q Consensus       478 ~lL~~-------~~~~~~~~a~~~l~~l~---------~~-~------~~~--~~~~~~~l~~~g~~~~L~~ll  526 (552)
                      ..+..       .+..-|+-||..++|-.         |- .      .-|  .+++..++.+..++..|...+
T Consensus       374 ~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCL  447 (619)
T 3c2g_A          374 TIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAGPNEKQQVCKFIEIDILKKLMSCL  447 (619)
T ss_dssp             HHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHH
T ss_pred             HHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCChHHHHHHHHHHHHHHHHHHHHHh
Confidence            76542       23344555666665532         21 1      112  244555677767777777755

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=88.02  E-value=20  Score=34.74  Aligned_cols=158  Identities=15%  Similarity=0.144  Sum_probs=93.4

Q ss_pred             CChhHHHHHHhcccHHHHHHhcCC----C-------CHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCC
Q 008827          237 KLECCRSRCLSLQVLKLVVDALAH----D-------SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS  305 (552)
Q Consensus       237 ~~~~~~~~~~~~~~l~~lv~~L~~----~-------~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~  305 (552)
                      .+..+.+.+. .+|+..|+.+|..    +       +......++.||+.+.......... +....++..+...|..++
T Consensus        36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~v-l~~~~~i~~l~~sL~s~~  113 (386)
T 2bnx_A           36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM-LETEEGILLLVRAMDPAV  113 (386)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHH-HHSSSHHHHHHHTCCTTS
T ss_pred             CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHH-HcCcHHHHHHHHHhCCCC
Confidence            4455666664 5777777777641    1       3466788889998886653222222 445678899999999899


Q ss_pred             HHHHHHHHHHHHHhhcCCc-hh-HHHHH----------hhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcccCC-hHh--
Q 008827          306 TAVQVAALGAISNIVVDFT-TR-RSTFI----------RLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAE-DKC--  369 (552)
Q Consensus       306 ~~v~~~a~~aL~nl~~~~~-~~-~~~~~----------~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~-~~~--  369 (552)
                      +.++..++..|.-++.... .. -..++          +..-...+++.+. +.+.+.+..++..+..+....+ .+.  
T Consensus       114 ~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~  193 (386)
T 2bnx_A          114 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV  193 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            9999999887777765432 12 22222          2234455666666 4556677666666655554322 122  


Q ss_pred             --HHHHHHhhcHHHHHhhhcCCChhHHHH
Q 008827          370 --KEEIFMELTASLLASLICDPEPSVQEQ  396 (552)
Q Consensus       370 --~~~i~~~~~~~~l~~ll~~~~~~v~~~  396 (552)
                        |.++...|..+.+-.+=...++++..+
T Consensus       194 ~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          194 HIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence              344444554444444433455555544

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=84.52  E-value=30  Score=33.37  Aligned_cols=161  Identities=16%  Similarity=0.161  Sum_probs=103.3

Q ss_pred             cccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 008827          248 LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR  327 (552)
Q Consensus       248 ~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~  327 (552)
                      ..+++.++++-.+.+.++|+..+..|...+.....     + -..+++.|..+|.++++.+.+.+..+.+++-   +..-
T Consensus        62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e-----l-~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY---pl~f  132 (386)
T 3o2t_A           62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE-----L-LLKLIANLNMLLRDENVNVVKKAILTMTQLY---KVAL  132 (386)
T ss_dssp             GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-----G-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHH
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHH
Confidence            36899999999999999999999999887654222     1 2466788888999999999988887776642   1111


Q ss_pred             HHHHhh---------------CcHHHHHHhhcCCCHHHHHHHHHHHHHhcc--c---CChH-------------------
Q 008827          328 STFIRL---------------GGVKLLVQLSKSMDSTIRLNALRALRNLIF--L---AEDK-------------------  368 (552)
Q Consensus       328 ~~~~~~---------------g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~--~---~~~~-------------------  368 (552)
                      +.+...               ..-..++.+..+.+..+|..++..+..+..  .   .+++                   
T Consensus       133 ~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp  212 (386)
T 3o2t_A          133 QWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHP  212 (386)
T ss_dssp             HHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCS
T ss_pred             HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCC
Confidence            111111               222345566778899999999998887541  1   0100                   


Q ss_pred             -h-HHHHH--HhhcHHHHHhhhcCC--ChhHHHHHHHHHHHhhcCCcchHHHHHh
Q 008827          369 -C-KEEIF--MELTASLLASLICDP--EPSVQEQALALVRNLVDGRINSVEYIFA  417 (552)
Q Consensus       369 -~-~~~i~--~~~~~~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~  417 (552)
                       . ...+.  ..+.++.|+..+.++  ++-....++..|..++...|.....++.
T Consensus       213 ~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~  267 (386)
T 3o2t_A          213 YIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQ  267 (386)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence             0 11222  234677788877753  3434455777777777777765554443

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=82.54  E-value=4.6  Score=33.24  Aligned_cols=72  Identities=15%  Similarity=0.089  Sum_probs=59.5

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC------CChhHHHHHHHHHHHhh
Q 008827          334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD------PEPSVQEQALALVRNLV  405 (552)
Q Consensus       334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~------~~~~v~~~a~~~L~~l~  405 (552)
                      .++..+.+-+++.++.++..|+..|-.+..+.++..+.++.....++.+++++..      .++.|+..++.++..-.
T Consensus        38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (148)
T 1mhq_A           38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT  115 (148)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence            4567778888899999999999999998887777778888888888889988864      46789999888877665

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=81.58  E-value=3.2  Score=33.86  Aligned_cols=72  Identities=17%  Similarity=0.164  Sum_probs=57.3

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827          334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV  405 (552)
Q Consensus       334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~  405 (552)
                      .++..+.+-+.+.++.++..|+..|-.+..+.++..+.++.....++.+..++...++.|+..++.++..-.
T Consensus        42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~  113 (140)
T 3ldz_A           42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT  113 (140)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            456777778888999999999999988887777667767766667777888887778889998888876654

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=81.15  E-value=5.3  Score=32.85  Aligned_cols=72  Identities=15%  Similarity=0.124  Sum_probs=59.2

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC------CChhHHHHHHHHHHHhh
Q 008827          334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD------PEPSVQEQALALVRNLV  405 (552)
Q Consensus       334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~------~~~~v~~~a~~~L~~l~  405 (552)
                      .++..|.+-+.+.++.++..|+..|-.+..+.++..+.++.....++.|++++..      .++.|+..++.++..-.
T Consensus        48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  125 (149)
T 3g2s_A           48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT  125 (149)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence            4667788888899999999999999988887777777888777788889988863      56789999888887665

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=80.63  E-value=4.7  Score=33.77  Aligned_cols=94  Identities=13%  Similarity=0.086  Sum_probs=67.6

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHH
Q 008827          303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL  382 (552)
Q Consensus       303 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l  382 (552)
                      ++|+..-...+..+..   ....-      ..++..|.+-+++.++.++..|+..|-.+..+..+..+.++.....++.+
T Consensus        30 ~~Dw~~~leicD~I~~---~~~~~------keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el  100 (163)
T 1x5b_A           30 TEDWSLIMDICDKVGS---TPNGA------KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEV  100 (163)
T ss_dssp             SCCHHHHHHHHHHHHH---SSSHH------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhC---CCccH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence            4566665555555532   11111      24567788888899999999999999988887777777777777778888


Q ss_pred             HhhhcC-CChhHHHHHHHHHHHhh
Q 008827          383 ASLICD-PEPSVQEQALALVRNLV  405 (552)
Q Consensus       383 ~~ll~~-~~~~v~~~a~~~L~~l~  405 (552)
                      ++++.. .++.|+..++.++..-.
T Consensus       101 ~~l~~~~~~~~Vk~kil~li~~W~  124 (163)
T 1x5b_A          101 RAVIKNKAHPKVCEKLKSLMVEWS  124 (163)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHH
Confidence            888864 66789998888776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	552
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-12
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-05
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	9e-05
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	6e-11
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	7e-10
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-08
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-06
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-06
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	8e-11
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-08
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-07
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-05
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	9e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-04
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	8e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	0.004
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-06
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	5e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.001
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.003
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-06
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-05
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-04
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	7e-05
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	8e-05
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	0.004
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	9e-05
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	0.002

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.0 bits (162), Expect = 2e-12
 Identities = 60/353 (16%), Positives = 126/353 (35%), Gaps = 14/353 (3%)

Query: 190 LIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ 249
           L  E      +  +   V +L   +++      + E    AL ++ S         +   
Sbjct: 104 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLE-AAWALTNIASGTSAQTKVVVDAD 162

Query: 250 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQ 309
            + L +  L   S +V+  A   L +V+    +      +    + P++ L +    ++ 
Sbjct: 163 AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD-YVLQCNAMEPILGLFNSNKPSLI 221

Query: 310 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC 369
             A   +SN+      +    +    +  L +L  SMD+   ++A  A+  L    ++  
Sbjct: 222 RTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAI 281

Query: 370 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQ 429
           +  I + +    L  L+      VQ  AL  V N+V G     + +     +      R 
Sbjct: 282 QAVIDVRIP-KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLP---ALRL 337

Query: 430 LRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRT 489
           L  + K  I+ +  + + N+  G     +AV+D             ++K L+  + + + 
Sbjct: 338 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDA-------NLIPPLVKLLEVAEYKTKK 390

Query: 490 AAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE 542
            A WA+ N   S        +  L   G +  + +++      +      ALE
Sbjct: 391 EACWAISNA-SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 442

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 46/372 (12%), Positives = 104/372 (27%), Gaps = 17/372 (4%)

Query: 9   EVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSL 68
            +    A +L  I     A     +  + +   + LL   S  V       + +    S 
Sbjct: 135 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 194

Query: 69  EQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIE 128
           + +              L  S   + + + +      N                    + 
Sbjct: 195 DYRDYVLQCNAMEPILGLFNS--NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA 252

Query: 129 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFS 188
            +        L+ +   I   +  P       I  ++   L+ELL     +    +    
Sbjct: 253 KLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 312

Query: 189 SLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL 248
             I    D+Q       GV      L   S      +     ++++ +         +  
Sbjct: 313 GNIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDA 371

Query: 249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAG--SFMNETIVIPLVRLLDDTST 306
            ++  +V  L       +  AC  + + S             +++  + PL  LL+    
Sbjct: 372 NLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADN 431

Query: 307 AVQVAALGAISNIV-----------VDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNAL 355
            +    L A+ NI+           ++         + GG++ +    ++ +  I   A 
Sbjct: 432 RIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 491

Query: 356 RALRNLIFLAED 367
           + +    F  E+
Sbjct: 492 KIIET-YFGEEE 502

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (99), Expect = 9e-05
 Identities = 32/200 (16%), Positives = 68/200 (34%), Gaps = 15/200 (7%)

Query: 336 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI-CDPEPSVQ 394
           +  + Q   S D   +L+A    R ++        + +        L   +  +    +Q
Sbjct: 78  LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 137

Query: 395 EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE 454
            +A   + N+  G  ++   +  +   +      QL      E++ Q ++ LGNVA    
Sbjct: 138 LEAAWALTNIASG-TSAQTKVVVDADAVPLF--IQLLYTGSVEVKEQAIWALGNVAGDST 194

Query: 455 SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLH 514
            +++ V+          A   I+    SN   L   A W + NL     P     +V   
Sbjct: 195 DYRDYVLQC-------NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV--- 244

Query: 515 DAGIVSHVKNMVNDPCLDVK 534
            +  +  +  ++     +  
Sbjct: 245 -SQALPTLAKLIYSMDTETL 263

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 6e-11
 Identities = 33/180 (18%), Positives = 56/180 (31%), Gaps = 13/180 (7%)

Query: 296 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNAL 355
             V+ L       Q      I +      + +    +LGG+  LV L +S +  ++  A 
Sbjct: 6   KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65

Query: 356 RALRNLIFLAEDKCKEEIFMELTASLLASLICDPE-PSVQEQALALVRNLV--------- 405
            ALRNL+F      K E   +       SL+       +Q+Q   L+ NL          
Sbjct: 66  GALRNLVF-RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124

Query: 406 --DGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQ 463
             D      + +        D      R     E+       L N+++     +      
Sbjct: 125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYS 184

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 7e-10
 Identities = 45/367 (12%), Positives = 105/367 (28%), Gaps = 16/367 (4%)

Query: 2   PLLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIIS 61
             +       +A  +         ++   +  +E   + L  L +      SG      +
Sbjct: 90  EAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSN 149

Query: 62  HSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGR 121
            S +    +      G L+ L+S   G    R+ S    + +      V +      +  
Sbjct: 150 MSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVE 209

Query: 122 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGD 181
              C++  +  R           L      +       G  +   + ++    D     +
Sbjct: 210 NCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEE 269

Query: 182 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 241
           E +   S  +   + ++        ++ +    +  +L         L  +         
Sbjct: 270 ETNPKGSGWLYHSDAIRTY------LNLMGKSKKDATLEACAGALQNLTASKGLMSSGMS 323

Query: 242 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL 301
           +   L  + L  +   L   +SDV  +    L ++SR          M   +   + RLL
Sbjct: 324 QLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRV---MGNQVFPEVTRLL 380

Query: 302 DD------TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS-TIRLNA 354
                    S  +  +A   + N++         +     +  ++ L +S  S      A
Sbjct: 381 TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440

Query: 355 LRALRNL 361
              L ++
Sbjct: 441 RLLLSDM 447

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 1e-08
 Identities = 54/415 (13%), Positives = 118/415 (28%), Gaps = 34/415 (8%)

Query: 41  LLSLLNNESENVSGLGASIISHSCKTSLEQK-LLFDAGVLKRLTSLLGGS--LIQRDA-- 95
            +  L+++ E    +GA  I H+C      K  ++  G + +L  LL      +Q+ A  
Sbjct: 7   AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAG 66

Query: 96  SLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCY 155
           +L ++      N     +  G     +L       + +   T LL +L            
Sbjct: 67  ALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA 126

Query: 156 LQDVGIKTKLINNLLELLDDPG---------RVGDEASFAFSSLIAEKEDMQKLAFEVNG 206
                +  ++I       D             V   A+    +L +     Q +      
Sbjct: 127 DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGL 186

Query: 207 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR-----------SRCLSLQVLKLVV 255
           +D L  ++Q      R  +  +     +   L                        +   
Sbjct: 187 IDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSS 246

Query: 256 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQ------ 309
                + SD                    +G   +   +   + L+  +           
Sbjct: 247 TGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAG 306

Query: 310 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC 369
                  S  ++     +   ++  G+  + +L +S +S +  +    L N+        
Sbjct: 307 ALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHR 366

Query: 370 --KEEIFMELTASLLAS-LICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI 421
               ++F E+T  L +          +   A   VRNL+  +    +  F+   +
Sbjct: 367 VMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 10/175 (5%)

Query: 336 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQE 395
           +   VQ   S D   +      +++  F  ++  K++++       L  L+  P  +VQ+
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCF-QDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 396 QALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK-- 453
            A   +RNLV     +      ++GI        LR    AEI+ Q   +L N+++    
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGI--REAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 454 -----ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSS 503
                      + D++++              +  D  +   A   + NL+ + +
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADA 175

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 44/333 (13%), Positives = 89/333 (26%), Gaps = 25/333 (7%)

Query: 230 ALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFM 289
            +   C + E  + +   L  +  +VD L   + +V+ AA   LR++          +  
Sbjct: 25  YIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR 84

Query: 290 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL------- 342
              I   +  L    +  +Q    G + N+      +    I      L  ++       
Sbjct: 85  QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE-ELIADALPVLADRVIIPFSGW 143

Query: 343 --------SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQ 394
                    + +D  +  NA   LRNL      +     +  L  SL+A +      +  
Sbjct: 144 CDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYV--QNCVAAS 201

Query: 395 EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE 454
                 V N +    N    + AE       +    R A   +          +      
Sbjct: 202 RCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNN 261

Query: 455 -----SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSP--GSS 507
                  +E           + A    +  +  +       A    L    +S     S 
Sbjct: 262 YDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321

Query: 508 GRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTA 540
              +       +  +  ++     DV     + 
Sbjct: 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASL 354

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 8e-11
 Identities = 46/220 (20%), Positives = 84/220 (38%), Gaps = 2/220 (0%)

Query: 225 EGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS 284
           EG L  LAD+C  ++     C    +  LV   L   ++ +R  A   + + S+++  + 
Sbjct: 35  EGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQ 94

Query: 285 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK 344
                   +   L  L  D    V+V AL AIS +V +       F+RL G  +L++  +
Sbjct: 95  EQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ 154

Query: 345 SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 404
                +++ +   L+NL  +   + K  +        L +L+        E  L  + +L
Sbjct: 155 QQVQKLKVKSAFLLQNL-LVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSL 213

Query: 405 VDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMY 444
           V      V     E  + L+ + R      +   E Q   
Sbjct: 214 VTDFPQGVR-ECREPELGLEELLRHRCQLLQQHEEYQEEL 252

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 30/196 (15%), Positives = 62/196 (31%), Gaps = 11/196 (5%)

Query: 231 LADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMN 290
           +AD+ S              ++ +V  +  ++ + +  A    R +    K     + + 
Sbjct: 1   MADIGSNQG------TVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIR 54

Query: 291 ETIVIPLVRLLDDTSTA-VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST 349
             ++   V  L  T  + +Q  +  A++NI    + +    +  G +   + L  S  + 
Sbjct: 55  AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH 114

Query: 350 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP----SVQEQALALVRNLV 405
           I   A+ AL N+           I       LLA L                   + NL 
Sbjct: 115 ISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 174

Query: 406 DGRINSVEYIFAEDGI 421
             +  +      E  +
Sbjct: 175 RNKNPAPPLDAVEQIL 190

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 19/136 (13%), Positives = 51/136 (37%), Gaps = 6/136 (4%)

Query: 231 LADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMN 290
           ++++ +  +    + ++  ++  +V  L+      +  A   + + +           ++
Sbjct: 296 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 355

Query: 291 ETIVIPLVRLLDDTSTAVQVAALGAISNI------VVDFTTRRSTFIRLGGVKLLVQLSK 344
             I+ PL+ LL    T +    L AISNI      + +           GG+  +  L +
Sbjct: 356 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 415

Query: 345 SMDSTIRLNALRALRN 360
             + ++   +L  +  
Sbjct: 416 HENESVYKASLNLIEK 431

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 58/391 (14%), Positives = 127/391 (32%), Gaps = 21/391 (5%)

Query: 160 GIKTKLINNLLELL--DDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKG 217
           G     + ++++ +  ++          A   L  EK+           + K  + L K 
Sbjct: 9   GTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT 68

Query: 218 SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVS 277
              P +FE    AL ++ S         +    +   +  LA   + +   A   L +++
Sbjct: 69  DCSPIQFE-SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA 127

Query: 278 RSIKNLSAGSFMNETIVIPLVRLLDDT----STAVQVAALGAISNIVVDFTTRRSTFIRL 333
                       +  I   L  L        +          +SN+  +           
Sbjct: 128 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVE 187

Query: 334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSV 393
             +  LV+L    D  +  ++  A+  L     ++ +  +   +   L+  L     P V
Sbjct: 188 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIV 247

Query: 394 QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK 453
                A+   +      + + I A       AV   L    K  I+ +  + + N+  G+
Sbjct: 248 TPALRAIGNIVTGTDEQTQKVIDAGA----LAVFPSLLTNPKTNIQKEATWTMSNITAGR 303

Query: 454 ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKL 513
           +   + V++  L+         ++  L   D + +  A WA+ N T   +      +V L
Sbjct: 304 QDQIQQVVNHGLV-------PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ---IVYL 353

Query: 514 HDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 544
              GI+  + N+++     +   +  A+   
Sbjct: 354 VHCGIIEPLMNLLSAKDTKIIQVILDAISNI 384

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 34/222 (15%), Positives = 56/222 (25%), Gaps = 26/222 (11%)

Query: 183 ASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR 242
           A    +S   E E  Q       G+  +   L              + L    +      
Sbjct: 333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP--SHWPLIKATVGLIRNLALCPANH 390

Query: 243 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD 302
           +       +  +V  L     D +    M                            +  
Sbjct: 391 APLREQGAIPRLVQLLVRAHQDTQRRTSMGG---------------------TQQQFVEG 429

Query: 303 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 362
                +     GA+  +  D    R     L  + L VQL  S    I+  A   L  L 
Sbjct: 430 VRMEEIVEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 488

Query: 363 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 404
              + +  E I  E   + L  L+      V   A A++  +
Sbjct: 489 --QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 4e-08
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 3/127 (2%)

Query: 296 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQ-LSKSMDSTIRLNA 354
            L +LL+D    V   A   +  +     +R +       V  +V+ +  + D       
Sbjct: 21  ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 80

Query: 355 LRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEY 414
              L NL      +    IF       L  ++  P  SV   A+  + NL+  +  +   
Sbjct: 81  AGTLHNLSH--HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138

Query: 415 IFAEDGI 421
           +    G+
Sbjct: 139 VRLAGGL 145

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 9e-08
 Identities = 26/172 (15%), Positives = 61/172 (35%), Gaps = 6/172 (3%)

Query: 230 ALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFM 289
           A+ ++ +  +      L+ + +  +   L  +   V + A + +  +S+   +  A    
Sbjct: 1   AVVNLINYQD---DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA-IMR 56

Query: 290 NETIVIPLVRLLDDT-STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS 348
           +  +V  +VR + +T          G + N+        +   + GG+  LV++  S   
Sbjct: 57  SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA-IFKSGGIPALVKMLGSPVD 115

Query: 349 TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALAL 400
           ++   A+  L NL+   E              ++A L       +      L
Sbjct: 116 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 62/524 (11%), Positives = 160/524 (30%), Gaps = 39/524 (7%)

Query: 41  LLSLLNNESENVSGLGASIISHSCKTSLE-QKLLFDAGVLKRLTSLLGGS---LIQRDAS 96
           L  LLN+E + V    A ++    K       ++    ++  +   +  +      R  +
Sbjct: 22  LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 81

Query: 97  --LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC 154
             L +++   +    +            +  +++++          A   L         
Sbjct: 82  GTLHNLSHHREGLLAIFKSGG-------IPALVKMLGSPVDSVLFYAITTL-HNLLLHQE 133

Query: 155 YLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHL 214
             +        +  ++ LL+         +     ++A      KL    +G  +   ++
Sbjct: 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193

Query: 215 QKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLR 274
            +   + +        +  + S     +   +    ++ +   L   S  +       LR
Sbjct: 194 MRTYTYEKLLWT-TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252

Query: 275 SVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG 334
           ++S +           E ++  LV+LL      V   A G +SN+  +    +    ++G
Sbjct: 253 NLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 308

Query: 335 GVKLLVQL--SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLA--SLICDPE 390
           G++ LV+          I   A+ ALR+L    ++    +  + L   L     L+  P 
Sbjct: 309 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 368

Query: 391 PSVQEQALALVRNLVDGRINSVEYIFAEDGIIL---------DAVGRQLRIASKAEIEIQ 441
                +A   +   +     +   +  +  I               R+  +    +  ++
Sbjct: 369 HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 428

Query: 442 G--MYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 499
           G  M  +    TG        +   ++          ++ L S    ++  A   +  L 
Sbjct: 429 GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL- 487

Query: 500 CSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQ 543
            +    ++     +   G  + +  +++     V       L +
Sbjct: 488 -AQDKEAA---EAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 8e-07
 Identities = 26/174 (14%), Positives = 56/174 (32%), Gaps = 12/174 (6%)

Query: 248 LQVLKLVVDALAHDSSDVRSAACMCLR-SVSRSIKNLSAGSFMNETIVIPLVRLLDDTST 306
              L  V+  L  +    RS + + L+ +V    +N   G    + I    +  + D+S 
Sbjct: 45  NNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVT--DFIKSECLNNIGDSSP 102

Query: 307 AVQVAALGAISNIV-VDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLA 365
            ++      I+ I            +       L  L  S D      A  AL+ +   +
Sbjct: 103 LIRATVGILITTIASKGELQNWPDLL-----PKLCSLLDSEDYNTCEGAFGALQKICEDS 157

Query: 366 EDKCKEEIFMELTASLLASLI---CDPEPSVQEQALALVRNLVDGRINSVEYIF 416
            +    ++       ++   +       P ++  A+A V   +  R  ++    
Sbjct: 158 AEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI 211

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 29/220 (13%), Positives = 73/220 (33%), Gaps = 5/220 (2%)

Query: 165 LINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRF 224
            I    +  D+       + +      A   D+    +    +  +   L++   H    
Sbjct: 351 GIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWV 410

Query: 225 EGILLALADMCSKLECCRSRCLSL--QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN 282
                 L  + +  E C    +    +++  ++  L+   + VRS  C  L   +  + +
Sbjct: 411 VKESGILV-LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS 469

Query: 283 LSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL 342
               +++   +   L++ + D++  VQ AA  A + +  +  T    ++    +  LV  
Sbjct: 470 QPPDTYLKPLM-TELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLA-YILDTLVFA 527

Query: 343 SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 382
                    L    A+  L         +  ++++    L
Sbjct: 528 FSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPL 567

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 20/164 (12%), Positives = 56/164 (34%), Gaps = 11/164 (6%)

Query: 234 MCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETI 293
           M              ++  L +  L      +R AA   L+ +           + + TI
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF----GKEWAHATI 481

Query: 294 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN 353
           +  ++ +  D +   ++  L  I+ +                +  +++++    + +R N
Sbjct: 482 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD---ITTKHMLPTVLRMAGDPVANVRFN 538

Query: 354 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQA 397
             ++L+ +  + ++   +         +L  L  D +  V+  A
Sbjct: 539 VAKSLQKIGPILDNSTLQSEVK----PILEKLTQDQDVDVKYFA 578

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 5e-04
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 229 LALADMCSKL-ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGS 287
           +      + L E C     +  +L  V+       ++VR      L+ +   + N    S
Sbjct: 498 MTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN----S 553

Query: 288 FMNETIVIPLVRLLDDTSTAVQVAALGAISNI 319
            +   +   L +L  D    V+  A  A++ +
Sbjct: 554 TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 21/138 (15%), Positives = 49/138 (35%), Gaps = 8/138 (5%)

Query: 247 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTST 306
           SL  + +++D L ++   +R  +   L +++ ++     G     + ++P +        
Sbjct: 8   SLYPIAVLIDELRNEDVQLRLNSIKKLSTIALAL-----GVERTRSELLPFLTDTIYDED 62

Query: 307 AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAE 366
            V +A    +                L  +  L  L+   ++ +R  A+ +LR +     
Sbjct: 63  EVLLALAEQLGTF-TTLVGGPEYVHCL--LPPLESLATVEETVVRDKAVESLRAISHEHS 119

Query: 367 DKCKEEIFMELTASLLAS 384
               E  F+ L   L   
Sbjct: 120 PSDLEAHFVPLVKRLAGG 137

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 27/173 (15%), Positives = 61/173 (35%), Gaps = 11/173 (6%)

Query: 234 MCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETI 293
           +    E    R LS  +L  +V+        VR A    +  ++  +       F +E +
Sbjct: 387 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL----GVEFFDEKL 442

Query: 294 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN 353
               +  L D   A++ AA   +  +V  F      +     +  ++ +S   +   R+ 
Sbjct: 443 NSLCMAWLVDHVYAIREAATSNLKKLVEKF---GKEWAHATIIPKVLAMSGDPNYLHRMT 499

Query: 354 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD 406
            L  +  L     + C ++I  +     +  +  DP  +V+      ++ +  
Sbjct: 500 TLFCINVLS----EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 548

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 37/309 (11%), Positives = 108/309 (34%), Gaps = 29/309 (9%)

Query: 249 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 308
           +V+K+++  L   + +V++ A  CL  +   +K         ETIV  L   +      +
Sbjct: 45  KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV-----ETIVDTLCTNMLSDKEQL 99

Query: 309 QVAALGAISNIVVDFTTRRSTFIRLGGV------KLLVQLSKSMDSTIRLNALRALRNLI 362
           +  +   +  ++ +     S       V      +L   ++K  D +++L AL  + +++
Sbjct: 100 RDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 159

Query: 363 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGII 422
                      F     + L   +  P  +V+++ +  + +LV    +    +F +   +
Sbjct: 160 SRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVM---SCGNIVFVD---L 211

Query: 423 LDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS 482
           ++ +  +L            +  +  ++          +++++          ++KF   
Sbjct: 212 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKII--------PLVVKFCNV 263

Query: 483 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGI--VSHVKNMVNDPCLDVKLRVKTA 540
           +D  LR   + A  +            +  + +  +  +++  N   D   + +  +   
Sbjct: 264 DDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDAD 323

Query: 541 LEQFNSFDD 549
               +    
Sbjct: 324 GGDDDDQGS 332

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 5e-05
 Identities = 42/296 (14%), Positives = 103/296 (34%), Gaps = 29/296 (9%)

Query: 254 VVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAAL 313
           +++ +     D R  A   L +  +   ++         +V  +++LL+D +  VQ  A+
Sbjct: 8   LLEKMTSSDKDFRFMATNDLMTELQK-DSIKLDDDSERKVVKMILKLLEDKNGEVQNLAV 66

Query: 314 GAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEI 373
             +  +V      +   I    V  L     S    +R  +   L+ +I           
Sbjct: 67  KCLGPLVSKVKEYQVETI----VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 122

Query: 374 FME-----LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGR 428
                   +T  L +++    + SVQ +AL ++ +++  +   +         IL  +  
Sbjct: 123 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS---ILTCLLP 179

Query: 429 QLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLR 488
           QL  + +  +  + +  LG++     S    V   L+       +  + +  +++     
Sbjct: 180 QLT-SPRLAVRKRTIIALGHLV---MSCGNIVFVDLI-------EHLLSELSKNDSMSTT 228

Query: 489 TAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 544
              +  +  ++       +G  +  +   I+  V    N    +++     A E F
Sbjct: 229 RTYIQCIAAIS-----RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESF 279

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 5e-04
 Identities = 30/212 (14%), Positives = 63/212 (29%), Gaps = 21/212 (9%)

Query: 109  EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINN 168
            EV             S I+E         +  AS  L  I   +           + +  
Sbjct: 841  EVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNL---------PEYLPF 891

Query: 169  LLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGIL 228
            +L+ +    +       +   +I+    +    +    V+ ++  L K        EG  
Sbjct: 892  VLQEITSQPKRQYLLLHSLKEIISSASVVGLKPY----VENIWALLLKHCECAE--EGTR 945

Query: 229  LALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF 288
              +A+   KL    +      +L  +   L   SS  RS+    ++              
Sbjct: 946  NVVAECLGKL----TLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLL 1001

Query: 289  MNETIVIPLVRLLDDTSTAVQVAALGAISNIV 320
              +  +   ++ L+D    V+  AL   ++  
Sbjct: 1002 --KNCIGDFLKTLEDPDLNVRRVALVTFNSAA 1031

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 8e-05
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 1/90 (1%)

Query: 230 ALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFM 289
           A       L  C    +   VL  + + + +     R AA M    +    +       +
Sbjct: 346 AAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 405

Query: 290 NETIVIPLVRLLDDTSTAVQVAALGAISNI 319
            +  +  L+ L+ D S  V+  A   +  I
Sbjct: 406 IQ-AMPTLIELMKDPSVVVRDTAAWTVGRI 434

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 19/139 (13%), Positives = 51/139 (36%), Gaps = 6/139 (4%)

Query: 165 LINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQK--GSLHPR 222
           L+  L + L       D+  +           +     E + V  +   +++   +   R
Sbjct: 321 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR 380

Query: 223 RFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN 282
             +  ++A   +    E  + + L +Q +  +++ +   S  VR  A   +  +   +  
Sbjct: 381 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 440

Query: 283 LSAGSFMNETIVIPLVRLL 301
            +    +N+  + PL++ L
Sbjct: 441 AA----INDVYLAPLLQCL 455

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 22/163 (13%), Positives = 47/163 (28%), Gaps = 17/163 (10%)

Query: 253 LVVDALAHDSSDVRSAACM-----CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA 307
            +   +      VR A         L ++          +  +   +  L ++  D    
Sbjct: 70  ALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYL 129

Query: 308 VQVAALGAISNIVVDFTTR------RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN- 360
           V+   +  I    +    R      R    +    + L  +++  +  +R      LR  
Sbjct: 130 VRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGD 189

Query: 361 -LIFLAEDK---CKEEIFMELTASLLASLICDPEPSVQEQALA 399
            L+ L  D     +       +   L  L  +P+P V+     
Sbjct: 190 DLLELLHDPDWTVRLAAVEHASLEALRELD-EPDPEVRLAIAG 231

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	552
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.9
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.88
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.81
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.78
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.7
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.65
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.56
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.54
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.5
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.4
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.39
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.39
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.35
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.34
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.33
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.24
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.14
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.56
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.46
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.43
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.33
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	97.45
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.41
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.35
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.3
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.29
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.49
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.42
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.32
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	90.01
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	89.43
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	83.08
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	80.64

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-38  Score=331.53  Aligned_cols=486  Identities=13%  Similarity=0.127  Sum_probs=408.6

Q ss_pred             ccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhc-CchHHHHHhhcC--CHHHHHHHHHHHHHHhcCChh
Q 008827           33 LQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDA-GVLKRLTSLLGG--SLIQRDASLESIATIFKNNPE  109 (552)
Q Consensus        33 ~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~-g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~  109 (552)
                      +..+++|.|+++|++++..+++.|+.++.+++..+..+..+... |+++.++.+|++  +..++..+..+|..++.+. +
T Consensus        14 ~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~-~   92 (529)
T d1jdha_          14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-E   92 (529)
T ss_dssp             ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH-H
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-h
Confidence            34578999999999999999999999999999888887777665 679999999974  5689999999999998654 4


Q ss_pred             hhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHH
Q 008827          110 VVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFS  188 (552)
Q Consensus       110 ~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~  188 (552)
                      ....+.+   .++++.++.+++++++.++..|+++|.+++...+. .+..+...|++|.|+++++ .+++++..++++|.
T Consensus        93 ~~~~i~~---~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~  168 (529)
T d1jdha_          93 GLLAIFK---SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ  168 (529)
T ss_dssp             HHHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT-HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred             hHHHHHH---CCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccch-hhhHHHhcCCchHHHHHHHccChHHHHHHHHHHH
Confidence            4455654   68899999999999999999999999999987654 4566778999999999998 45678999999999


Q ss_pred             HhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHH
Q 008827          189 SLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSA  268 (552)
Q Consensus       189 ~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~  268 (552)
                      +++..++..+..+.+.|+++.|+.++...+ .+.++..+..++.+++. +++.+..+.+.|+++.++.++.+++.+++..
T Consensus       169 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~  246 (529)
T d1jdha_         169 ILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQN  246 (529)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHH
T ss_pred             HHhhhhhHHHHHHHhcccchHHHHHHHhhh-hHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhcccchhhhhh
Confidence            999988888888889999999999998763 56788999999999986 5678889999999999999999999999999


Q ss_pred             HHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc--CC
Q 008827          269 ACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK--SM  346 (552)
Q Consensus       269 a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~--~~  346 (552)
                      +++++.+++.....   . ....|+++.|++++++++++++..|+++|+|++.+.+..+..+.+.|+++.++.++.  ++
T Consensus       247 a~~~l~~ls~~~~~---~-~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~  322 (529)
T d1jdha_         247 CLWTLRNLSDAATK---Q-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD  322 (529)
T ss_dssp             HHHHHHHHHTTCTT---C-SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTT
T ss_pred             hhhHHHhccccccc---h-hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhc
Confidence            99999999865322   2 345789999999999999999999999999999888888888999999999998874  46


Q ss_pred             CHHHHHHHHHHHHHhcccCCh--HhHHHHHHhhcHHHHHhhhcCCC-hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchH
Q 008827          347 DSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPE-PSVQEQALALVRNLVDGRINSVEYIFAEDGIIL  423 (552)
Q Consensus       347 ~~~v~~~a~~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~  423 (552)
                      ++.++..++++|.+++.....  ..+..+...++++.++.++.+++ ..++..++++++|++... +....+.+.+  .+
T Consensus       323 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~-~~~~~l~~~g--~i  399 (529)
T d1jdha_         323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQG--AI  399 (529)
T ss_dssp             CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTT--HH
T ss_pred             chhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhh-hhhhhhhhcc--cH
Confidence            788999999999999864332  24556667889999999998655 568889999999998764 4556666666  78


Q ss_pred             HHHHHHhccc---------------------CchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcC
Q 008827          424 DAVGRQLRIA---------------------SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS  482 (552)
Q Consensus       424 ~~l~~~L~~~---------------------~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~  482 (552)
                      +.+.++|.+.                     ..+++.+.++.++.+++.. +..+..+..       .|+++.|+++|.+
T Consensus       400 ~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~-~~~r~~~~~-------~~~i~~Lv~lL~~  471 (529)
T d1jdha_         400 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRG-------LNTIPLFVQLLYS  471 (529)
T ss_dssp             HHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS-HHHHHHHHH-------TTCHHHHHHGGGC
T ss_pred             HHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccC-HHHHHHHHH-------CCCHHHHHHHhCC
Confidence            8888887641                     1235667788888888853 444544433       7889999999999


Q ss_pred             CChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHh
Q 008827          483 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN  545 (552)
Q Consensus       483 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~  545 (552)
                      +++.++..|+++|.+|+.     ..+..+.+.+.|++++|+++++++++++++.|..||.+++
T Consensus       472 ~~~~v~~~a~~aL~~L~~-----~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ls  529 (529)
T d1jdha_         472 PIENIQRVAAGVLCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             SCHHHHHHHHHHHHHHTT-----SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhc-----ChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence            999999999999999985     3566788999999999999999999999999999999874

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.5e-35  Score=296.61  Aligned_cols=412  Identities=15%  Similarity=0.184  Sum_probs=354.6

Q ss_pred             CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC--CCchhchHHHHHHHhhcCCHHH
Q 008827          120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDM  197 (552)
Q Consensus       120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~--~~~v~~~a~~~L~~l~~~~~~~  197 (552)
                      ...+..+++.+++++++.|..|+.++.++.....+...+.+++.|++|.|+++|+.  +++++..++++|.+++.++++.
T Consensus        12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~   91 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ   91 (434)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhh
Confidence            56799999999999999999999999998776655445678889999999999973  3578999999999999999888


Q ss_pred             HHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCH-----HHHHHHHHH
Q 008827          198 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS-----DVRSAACMC  272 (552)
Q Consensus       198 ~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~-----~v~~~a~~~  272 (552)
                      ++.+++.|+++.++++|.++  ++.+++.++++|++++.+++..+..+.+.|+++.++.++...+.     .....++++
T Consensus        92 ~~~i~~~~~i~~l~~~L~~~--~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  169 (434)
T d1q1sc_          92 TKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT  169 (434)
T ss_dssp             HHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred             hhHhhhccchhhhhhccccC--CHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHH
Confidence            88899999999999998875  48899999999999999888999999999999999999986543     445667788


Q ss_pred             HHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHH
Q 008827          273 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL  352 (552)
Q Consensus       273 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~  352 (552)
                      +.+++......... ....++++.++.++.+++++++..+++++++++.........+.+.|+++.++++++++++.++.
T Consensus       170 l~~~~~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~  248 (434)
T d1q1sc_         170 LSNLCRNKNPAPPL-DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT  248 (434)
T ss_dssp             HHHHTCCCTTCCCH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred             HHHHhhcccccchh-hhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhh
Confidence            88888764433332 35678899999999999999999999999999987777777788899999999999999999999


Q ss_pred             HHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc
Q 008827          353 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI  432 (552)
Q Consensus       353 ~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~  432 (552)
                      .+++++.+++.+ +++.+..+++.++++.+..++.+++++++..++++|.+++.+.++....+.+.+  +++.+.+.+.+
T Consensus       249 ~al~~l~~l~~~-~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~--~i~~li~~l~~  325 (434)
T d1q1sc_         249 PALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG--LVPFLVGVLSK  325 (434)
T ss_dssp             HHHHHHHHHTTS-CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--CHHHHHHHHHS
T ss_pred             chhhhhhhHHhh-hhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhh--hHHHHHHHHhc
Confidence            999999999874 456788889999999999999999999999999999999998877777888877  78999999988


Q ss_pred             cCchhHHHHHHHHHHhhcCC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCC--CCCCCHHH
Q 008827          433 ASKAEIEIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS--SSPGSSGR  509 (552)
Q Consensus       433 ~~~~~v~~~a~~~L~~la~~-~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~  509 (552)
                       ++++++..++++++|++.+ ++.....+.+       .|+++.|+.+++++|++++..+.++|.++...  ..+.....
T Consensus       326 -~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~-------~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~  397 (434)
T d1q1sc_         326 -ADFKTQKEAAWAITNYTSGGTVEQIVYLVH-------CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKL  397 (434)
T ss_dssp             -SCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-------TTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             -cChHHHHHHHHHHHHHHhcCCHHHHHHHHH-------CCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence             8899999999999999874 3444555555       79999999999999999999999999998631  12234455


Q ss_pred             HHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHh
Q 008827          510 LVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN  545 (552)
Q Consensus       510 ~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~  545 (552)
                      ...+.+.|+++.|..|..++++++++.|...|++++
T Consensus       398 ~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         398 SIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             HHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            677889999999999988899999999999998775

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-35  Score=305.91  Aligned_cols=470  Identities=13%  Similarity=0.112  Sum_probs=384.1

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCCCCCCcccc-cccchHHHHHhhcC-CCCcchHHHHHHHHhhcCChhhHHHHHhcCchHH
Q 008827            4 LKSYMEVVDAGARSLKMIYQSKMAPKYDFL-QEENMEFLLSLLNN-ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKR   81 (552)
Q Consensus         4 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~-~~~~i~~l~~ll~~-~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~   81 (552)
                      ..++..+...++.++..++...... ..+. ..+.++.++.+|+. +++.+++.++.+|.+++..++.+..+.+.|+++.
T Consensus        27 ~~~~~~v~~~A~~~l~~l~~~~~~~-~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~  105 (529)
T d1jdha_          27 NDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPA  105 (529)
T ss_dssp             TCSCHHHHHHHHHHHHHHHTSHHHH-HHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhccHHH-HHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHH
Confidence            4677889999999999998664444 2333 45679999999974 5678999999999999999999999999999999


Q ss_pred             HHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhh
Q 008827           82 LTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVG  160 (552)
Q Consensus        82 L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~  160 (552)
                      |+.+|++ +++++..|+.+|++++.+++.....+..   .++++.++.+++++++.++..++.+|.+++..+.. .+..+
T Consensus       106 Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~---~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~  181 (529)
T d1jdha_         106 LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL---AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE-SKLII  181 (529)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH---HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH-HHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHh---cCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhH-HHHHH
Confidence            9999997 6799999999999999888777655543   78999999999999999999999999999876533 35667


Q ss_pred             hHHhHHHHHHHhcC--CCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCC
Q 008827          161 IKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL  238 (552)
Q Consensus       161 ~~~g~i~~Lv~ll~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~  238 (552)
                      ...|+++.|+.++.  +...++..++.++.+++.+ ++++..+++.|+++.|+.++.+.+  +.++..+++++.+++...
T Consensus       182 ~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~~~~~~~~~~g~~~~L~~ll~~~~--~~~~~~a~~~l~~ls~~~  258 (529)
T d1jdha_         182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS--QRLVQNCLWTLRNLSDAA  258 (529)
T ss_dssp             HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSC--HHHHHHHHHHHHHHHTTC
T ss_pred             HhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-ccccchhhhhhhhhhHHHHhcccc--hhhhhhhhhHHHhccccc
Confidence            78899999999997  3346788899999999864 556778899999999999888764  788999999999987533


Q ss_pred             hhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc--CCCHHHHHHHHHHH
Q 008827          239 ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD--DTSTAVQVAALGAI  316 (552)
Q Consensus       239 ~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL  316 (552)
                      .   ......|+++.+++++++++..++..++++|++++...+..+.. +.+.++++.++.++.  .+.+++++.|+++|
T Consensus       259 ~---~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~-i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL  334 (529)
T d1jdha_         259 T---KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM-VCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             T---TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHH-HHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             c---chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHH-HHHhhhHHHHHHHHHhhhcchhHHHHHHHHh
Confidence            2   22334588999999999999999999999999998764544444 678899999999884  56789999999999


Q ss_pred             HHhhcCCch---hHHHHHhhCcHHHHHHhhcCCC-HHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCC--
Q 008827          317 SNIVVDFTT---RRSTFIRLGGVKLLVQLSKSMD-STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE--  390 (552)
Q Consensus       317 ~nl~~~~~~---~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~--  390 (552)
                      .|++.....   .+..+...|+++.++.++..++ ..++..+++++.+++..  ++.+..+.+.|+++.+++++.+.+  
T Consensus       335 ~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~  412 (529)
T d1jdha_         335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQD  412 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             hcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh--hhhhhhhhhcccHHHHHHHHhcCCHH
Confidence            999975543   3445677899999999998754 56788899999999763  467888999999999999986543  


Q ss_pred             --------------------hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhc
Q 008827          391 --------------------PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVA  450 (552)
Q Consensus       391 --------------------~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la  450 (552)
                                          +++.+.+..++.+++.. +.....+-+.+  .++.|+++|.+ +++.++..++++|.+++
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~-~~~r~~~~~~~--~i~~Lv~lL~~-~~~~v~~~a~~aL~~L~  488 (529)
T d1jdha_         413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLN--TIPLFVQLLYS-PIENIQRVAAGVLCELA  488 (529)
T ss_dssp             HC-----------CBTTBCHHHHHHHHHHHHHHHTTS-HHHHHHHHHTT--CHHHHHHGGGC-SCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccC-HHHHHHHHHCC--CHHHHHHHhCC-CCHHHHHHHHHHHHHHh
Confidence                                34566677777777643 33333333344  68999999988 88999999999999998


Q ss_pred             CCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          451 TGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       451 ~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                      .. ++.++.+.+       .|+++.|+++++++|+.++..|+.+|.+++
T Consensus       489 ~~-~~~~~~i~~-------~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ls  529 (529)
T d1jdha_         489 QD-KEAAEAIEA-------EGATAPLTELLHSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             TS-HHHHHHHHH-------TTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             cC-hhhHHHHHH-------CCCHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence            64 555666665       899999999999999999999999998874

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-33  Score=293.00  Aligned_cols=416  Identities=15%  Similarity=0.187  Sum_probs=359.2

Q ss_pred             CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC--CCchhchHHHHHHHhhcCCHHH
Q 008827          120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDM  197 (552)
Q Consensus       120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~--~~~v~~~a~~~L~~l~~~~~~~  197 (552)
                      ...++.++..+.+++...+..|+..+..+.........+.+++.|++|.|+++++.  ++.++..|+++|++++.+++..
T Consensus        75 ~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~  154 (503)
T d1wa5b_          75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  154 (503)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            45688889999999999999999999988755444445678899999999999983  3568999999999999999888


Q ss_pred             HHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 008827          198 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVS  277 (552)
Q Consensus       198 ~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls  277 (552)
                      ...+.+.|+++.++.+|.+++  .++++.++++|++++.+++..|..+.+.|+++.++.++.+.+..++..+++++.+++
T Consensus       155 ~~~~~~~g~i~~l~~lL~s~~--~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~  232 (503)
T d1wa5b_         155 TKVVVDADAVPLFIQLLYTGS--VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC  232 (503)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCC--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCChHHHHHHhcCCC--hhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHh
Confidence            888889999999999998764  789999999999999988899999999999999999999999999999999999999


Q ss_pred             cccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHH
Q 008827          278 RSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRA  357 (552)
Q Consensus       278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~a  357 (552)
                      ......... ....+++|.++.++.+++++++..++++|.+++.........+.+.|+++.++.++.+++..++..++.+
T Consensus       233 ~~~~~~~~~-~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~  311 (503)
T d1wa5b_         233 RGKKPQPDW-SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA  311 (503)
T ss_dssp             CCSSSCCCH-HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             cCCccchHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHH
Confidence            875444433 4567899999999999999999999999999998887777889999999999999999999999999999


Q ss_pred             HHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchh
Q 008827          358 LRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE  437 (552)
Q Consensus       358 L~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~  437 (552)
                      +++++.+ .......+.+.++++.+..++.++++.++..++|+++|++.++++....+++.+  +++.++..+.+ ++++
T Consensus       312 l~nl~~~-~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~--~l~~li~~l~~-~~~~  387 (503)
T d1wa5b_         312 VGNIVTG-NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN--LIPPLVKLLEV-AEYK  387 (503)
T ss_dssp             HHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--CHHHHHHHHHH-SCHH
T ss_pred             HHHHHHH-HHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHcc--ccchhHHhccc-CChh
Confidence            9999874 345667788889999999999999999999999999999999888888888777  78999999988 8899


Q ss_pred             HHHHHHHHHHhhcCCC---hhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCC-------CCCCH
Q 008827          438 IEIQGMYVLGNVATGK---ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSS-------SPGSS  507 (552)
Q Consensus       438 v~~~a~~~L~~la~~~---~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~-------~~~~~  507 (552)
                      ++..++|+|.|++.+.   +.....+++       .|+++.|+.+|.+.|.++...+..+|.++....       .....
T Consensus       388 v~~~a~~~l~nl~~~~~~~~~~~~~l~~-------~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~  460 (503)
T d1wa5b_         388 TKKEACWAISNASSGGLQRPDIIRYLVS-------QGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNIN  460 (503)
T ss_dssp             HHHHHHHHHHHHHHHTTTCTHHHHHHHH-------TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHH-------CCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccch
Confidence            9999999999998633   233444554       799999999999999999999999988875200       01123


Q ss_pred             HHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhcC
Q 008827          508 GRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD  549 (552)
Q Consensus       508 ~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~~  549 (552)
                      .....+.+.|+++.|..+..+++.++.+.|...|..++..+|
T Consensus       461 ~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~~  502 (503)
T d1wa5b_         461 ENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE  502 (503)
T ss_dssp             HHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCcC
Confidence            455678899999999999888899999999999998887665

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.2e-32  Score=274.35  Aligned_cols=406  Identities=16%  Similarity=0.152  Sum_probs=337.9

Q ss_pred             ccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhh--HHHHHhcCchHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhh
Q 008827           35 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLE--QKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEV  110 (552)
Q Consensus        35 ~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~--~~~l~~~g~i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~  110 (552)
                      ..+|+.+++.+.++++..+..|+..+.++...+.+  ...+.+.|++|+|+++|++  ++.+|..++.+|.+++..+++.
T Consensus        12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~   91 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ   91 (434)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhh
Confidence            46799999999999999999999999987433333  4678899999999999975  4579999999999999887776


Q ss_pred             hhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCCCC------chhchHH
Q 008827          111 VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG------RVGDEAS  184 (552)
Q Consensus       111 ~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~~~------~v~~~a~  184 (552)
                      ...+.+   .++++.++.+++++++.++..|+++|.+++..++. .+..+...|+++.|+.++..+.      .....++
T Consensus        92 ~~~i~~---~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~-~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  167 (434)
T d1q1sc_          92 TKAVVD---GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA-FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT  167 (434)
T ss_dssp             HHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred             hhHhhh---ccchhhhhhccccCCHHHHHHHHHHHHHHhccchH-HHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHH
Confidence            666653   78999999999999999999999999999876543 3555777899999999998432      1234567


Q ss_pred             HHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHH
Q 008827          185 FAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSD  264 (552)
Q Consensus       185 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~  264 (552)
                      +++.++..............+.++.++.++...  ++.++..++++|.+++..++.....+...|++|.++++++++++.
T Consensus       168 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~  245 (434)
T d1q1sc_         168 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP  245 (434)
T ss_dssp             HHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHH
T ss_pred             HHHHHHhhcccccchhhhhhhHHHHHHHHHhcc--ccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhh
Confidence            888888876554434444567789999988765  488999999999999987777777788899999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc
Q 008827          265 VRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK  344 (552)
Q Consensus       265 v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~  344 (552)
                      ++..++.++.+++...+..+.. +.+.|+++.++.++++++++++..|+++|++++.........+.+.|+++.++.++.
T Consensus       246 ~~~~al~~l~~l~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~  324 (434)
T d1q1sc_         246 IVTPALRAIGNIVTGTDEQTQK-VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS  324 (434)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHH-HHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhchhhhhhhHHhhhhHHHHH-HHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHh
Confidence            9999999999998765554444 788999999999999999999999999999999888888888899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcC-----CcchHHHHHhhc
Q 008827          345 SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG-----RINSVEYIFAED  419 (552)
Q Consensus       345 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~~  419 (552)
                      +++..++..+++++.|++...+++....+.+.|+++.|++++.+.+++++..++++|.++...     ........+++.
T Consensus       325 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~  404 (434)
T d1q1sc_         325 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC  404 (434)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             ccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHc
Confidence            999999999999999999877777778888999999999999999999999999999998742     222344455554


Q ss_pred             CchHHHHHHHhcccCchhHHHHHHHHHHhh
Q 008827          420 GIILDAVGRQLRIASKAEIEIQGMYVLGNV  449 (552)
Q Consensus       420 ~~~~~~l~~~L~~~~~~~v~~~a~~~L~~l  449 (552)
                      | .++.+-. |.++++++++..|..+|-+.
T Consensus       405 ~-~~~~i~~-L~~~~n~~i~~~a~~il~~~  432 (434)
T d1q1sc_         405 G-GLDKIEA-LQRHENESVYKASLNLIEKY  432 (434)
T ss_dssp             T-SHHHHHH-HHTCSSHHHHHHHHHHHHHH
T ss_pred             C-CHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence            4 4676644 45558999999999988654

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-30  Score=271.39  Aligned_cols=371  Identities=16%  Similarity=0.198  Sum_probs=319.0

Q ss_pred             hHHHHHHHhcC-CCCchhchHHHHHHHhhcCCH-HHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhH
Q 008827          164 KLINNLLELLD-DPGRVGDEASFAFSSLIAEKE-DMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC  241 (552)
Q Consensus       164 g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~  241 (552)
                      ..++.++..+. ++...+..+...+.++.+.+. .....+++.|++|.|++++... .++.++..|+++|++++..++..
T Consensus        76 ~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~-~~~~iq~~a~~~L~ni~~~~~~~  154 (503)
T d1wa5b_          76 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQ  154 (503)
T ss_dssp             CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHH
Confidence            35677777776 445677888888888764322 2235678899999999988765 45778999999999999888888


Q ss_pred             HHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 008827          242 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVV  321 (552)
Q Consensus       242 ~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~  321 (552)
                      ...+.+.|++|.++.+|.+++.+++..++++|++++......+.. +...|++++|+.++.+.+++++..++|++.|++.
T Consensus       155 ~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~-l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~  233 (503)
T d1wa5b_         155 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY-VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR  233 (503)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHH-HHhhcccccchhhcccCCHHHHHHHHHHHHHHhc
Confidence            888889999999999999999999999999999998875666655 7899999999999999999999999999999997


Q ss_pred             CCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHH
Q 008827          322 DFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALV  401 (552)
Q Consensus       322 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L  401 (552)
                      ............++++.++.++.++++.++..++|++.+++.+ +++....+.+.++++.++.++.++++.++..++.++
T Consensus       234 ~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l  312 (503)
T d1wa5b_         234 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG-PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV  312 (503)
T ss_dssp             CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccC-CchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHH
Confidence            6554444455678999999999999999999999999999874 456777888999999999999999999999999999


Q ss_pred             HHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 008827          402 RNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ  481 (552)
Q Consensus       402 ~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~  481 (552)
                      ++++.+.+.....+++.+  +++.+..++.+ +++.++..++|+|+|++.+++.....+++       .++++.++.++.
T Consensus       313 ~nl~~~~~~~~~~~~~~~--~l~~l~~ll~~-~~~~i~~~~~~~l~nl~~~~~~~~~~i~~-------~~~l~~li~~l~  382 (503)
T d1wa5b_         313 GNIVTGNDLQTQVVINAG--VLPALRLLLSS-PKENIKKEACWTISNITAGNTEQIQAVID-------ANLIPPLVKLLE  382 (503)
T ss_dssp             HHHTTSCHHHHHHHHHTT--HHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHH-------TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccc--hHHHHHHHhcC-CCHHHHHHHHHHHHHHhhccHHHHHHHHH-------ccccchhHHhcc
Confidence            999988877777777777  89999999887 89999999999999999998888887776       799999999999


Q ss_pred             CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhhc
Q 008827          482 SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  548 (552)
Q Consensus       482 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~~  548 (552)
                      +++..++.+|+|+|+|++... ....+....+.+.|++++|..+++.++.++...+..+|.++.+.+
T Consensus       383 ~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~  448 (503)
T d1wa5b_         383 VAEYKTKKEACWAISNASSGG-LQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG  448 (503)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHT-TTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCChhHHHHHHHHHHHHHhcc-cccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998521 123567888999999999999998888888888899999887654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.9e-24  Score=217.48  Aligned_cols=401  Identities=13%  Similarity=0.117  Sum_probs=282.6

Q ss_pred             cchHHHHHhhcCCCCcchHHHHHHHHhhcC-ChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhh
Q 008827           36 ENMEFLLSLLNNESENVSGLGASIISHSCK-TSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQ  113 (552)
Q Consensus        36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~-~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~  113 (552)
                      .+||.|+++|++++++++..|+.+|.++|. ++++|..+.+.|+||+|+++|++ ++.+|..|+.+|++|+.++++....
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            368999999999999999999999999985 56789999999999999999997 7899999999999999888887666


Q ss_pred             hccccCCccHHHHHHHHh-cCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-----------------C
Q 008827          114 FVGPDTGRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-----------------D  175 (552)
Q Consensus       114 ~~~~~~~~~l~~l~~ll~-~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-----------------~  175 (552)
                      +.+   .++++.++.+++ +.++.+|..|+.+|.+++.....  ....... +++.++..+.                 .
T Consensus        82 i~~---~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~  155 (457)
T d1xm9a1          82 TRR---QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL--KEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVV  155 (457)
T ss_dssp             HHH---TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST--HHHHHHH-HHHHHHHHTTHHHHTCC---------CC
T ss_pred             HHH---CCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh--HHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccc
Confidence            654   678999998775 67889999999999999986543  2334444 4444444431                 1


Q ss_pred             CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCC----CChhhHHHHHHHHHHhhcCChhHHHHHHhcccH
Q 008827          176 PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS----LHPRRFEGILLALADMCSKLECCRSRCLSLQVL  251 (552)
Q Consensus       176 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~----~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l  251 (552)
                      +..++..++.++.+++.+++..+......|+++.+++++....    ........+...+......   ...  .....+
T Consensus       156 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~--~~~~~~  230 (457)
T d1xm9a1         156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR---LDA--EVPTRY  230 (457)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTT---HHH--HSCCHH
T ss_pred             cHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhh---hHH--HHHHHH
Confidence            2356778999999998776654444445677899998876431    1122333344443333211   100  001111


Q ss_pred             HH-------------HHHhcCCCCHHHH-HHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc-CCCHHHHHHHHHHH
Q 008827          252 KL-------------VVDALAHDSSDVR-SAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAI  316 (552)
Q Consensus       252 ~~-------------lv~~L~~~~~~v~-~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL  316 (552)
                      ..             ....+........ ..+...+...+.. ...... +...++++.++.++. ..+++++..+.+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l  308 (457)
T d1xm9a1         231 RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETN-PKGSGW-LYHSDAIRTYLNLMGKSKKDATLEACAGAL  308 (457)
T ss_dssp             HHHHHTC----------------------------CCCCCSS-CCGGGG-GGSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhh-hHHHHH-HHhhcHHHHHHHHHhcccchHHHHHHHHHH
Confidence            11             1111111111111 1111122222222 222223 566788999999886 56789999999999


Q ss_pred             HHhhcCCch-----hHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC---
Q 008827          317 SNIVVDFTT-----RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD---  388 (552)
Q Consensus       317 ~nl~~~~~~-----~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~---  388 (552)
                      .+++.....     .+..+.+.|+++.|+++++++++.++..+++++++++..  ++.+..+. .++++.++.++..   
T Consensus       309 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~--~~~~~~i~-~~~i~~li~~L~~~~~  385 (457)
T d1xm9a1         309 QNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMG-NQVFPEVTRLLTSHTG  385 (457)
T ss_dssp             HHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHH-HHTHHHHHHTTTSCCS
T ss_pred             HHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC--hhHHHHHH-HhhHHHHHHHHhcccc
Confidence            999865433     233455679999999999999999999999999999863  45665554 5678889988853   


Q ss_pred             ---CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCCh
Q 008827          389 ---PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE  454 (552)
Q Consensus       389 ---~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~  454 (552)
                         .+++++..++.+|.+++..+++..+.+++.+  .++.|..++.++.++.+++.|+.+|.+|....+
T Consensus       386 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g--~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         386 NTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS--MLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHH--HHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             CcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCC--CHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence               3457999999999999998888888888877  689999999886778999999999999986443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.3e-24  Score=216.22  Aligned_cols=366  Identities=13%  Similarity=0.097  Sum_probs=272.0

Q ss_pred             CccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHH
Q 008827          120 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQ  198 (552)
Q Consensus       120 ~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~  198 (552)
                      |..+|.++++++++++.+|..|+.+|.+++..++ ..+..++..|++|.|+++|+ ++++++..|+++|.+++.++++++
T Consensus         1 ~~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~   79 (457)
T d1xm9a1           1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDE-SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             CCCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCS-SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            3578999999999999999999999999997554 35788999999999999998 567899999999999999999999


Q ss_pred             HHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhc---------------CCCCH
Q 008827          199 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL---------------AHDSS  263 (552)
Q Consensus       199 ~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L---------------~~~~~  263 (552)
                      ..+.+.|+++.|+.++... .++.++..++++|.+++... ..+......|+.+.+..++               ...+.
T Consensus        80 ~~i~~~g~v~~li~~l~~~-~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  157 (457)
T d1xm9a1          80 LETRRQNGIREAVSLLRRT-GNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDP  157 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred             HHHHHCCChHHHHHHHhcc-CcHHHHHHHHHHHHHHHhhh-hhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccH
Confidence            9999999999999988765 46889999999999998754 3344444444333333322               34578


Q ss_pred             HHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCC------CHHHHHHHHHHHHHhh---------------cC
Q 008827          264 DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT------STAVQVAALGAISNIV---------------VD  322 (552)
Q Consensus       264 ~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~------~~~v~~~a~~aL~nl~---------------~~  322 (552)
                      .++..++.++..++...+..... ....|+++.++.++++.      .......+...+.+..               ..
T Consensus       158 ~v~~~a~~~l~~~~~~~~~~~~~-~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  236 (457)
T d1xm9a1         158 EVFFNATGCLRNLSSADAGRQTM-RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN  236 (457)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHH-TTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCchHHHHH-HHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhh
Confidence            89999999999998874443322 45678899999888531      1111111111111110               00


Q ss_pred             -----------------------------------CchhHHHHHhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcccCC
Q 008827          323 -----------------------------------FTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAE  366 (552)
Q Consensus       323 -----------------------------------~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~  366 (552)
                                                         .......+.+.++++.++.++.. .++.++..+.+++.+++....
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~  316 (457)
T d1xm9a1         237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG  316 (457)
T ss_dssp             C----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSS
T ss_pred             hhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccc
Confidence                                               00011122334577878877654 578899999999999976433


Q ss_pred             h----HhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccc-----Cchh
Q 008827          367 D----KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA-----SKAE  437 (552)
Q Consensus       367 ~----~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~-----~~~~  437 (552)
                      .    ..+..+.+.++++.+++++.+++++++..+++++++++.... .... +.++  .++.++.+|...     .+++
T Consensus       317 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~-~~~~-i~~~--~i~~li~~L~~~~~~~~~~~~  392 (457)
T d1xm9a1         317 LMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL-LHRV-MGNQ--VFPEVTRLLTSHTGNTSNSED  392 (457)
T ss_dssp             SHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG-GHHH-HHHH--THHHHHHTTTSCCSCSTTHHH
T ss_pred             cchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh-HHHH-HHHh--hHHHHHHHHhccccCcCCcHH
Confidence            2    123445567899999999999999999999999999986543 3333 3444  477788877542     3457


Q ss_pred             HHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC-ChhHHHHHHHHHHhhcC
Q 008827          438 IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSRLRTAAVWAVLNLTC  500 (552)
Q Consensus       438 v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~~~a~~~l~~l~~  500 (552)
                      ++..++++|.+++.+++..++.+.+       .|+++.|+.++++. ++.++.+|+.+|++|+.
T Consensus       393 v~~~a~~~L~~l~~~~~~~~~~l~~-------~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~  449 (457)
T d1xm9a1         393 ILSSACYTVRNLMASQPQLAKQYFS-------SSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHCC-------HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHH-------CCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHc
Confidence            9999999999999888878887775       79999999999875 67899999999999975

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.4e-21  Score=204.07  Aligned_cols=486  Identities=14%  Similarity=0.141  Sum_probs=335.3

Q ss_pred             CCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHH
Q 008827            5 KSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTS   84 (552)
Q Consensus         5 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~   84 (552)
                      .++..+.+.+..+|..+....  + ...+....+|.+..+..++....+..++.++..+......+   .....++.+..
T Consensus        98 ~~~~~Vr~~a~~~l~~i~~~~--~-~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~---~~~~l~~~~~~  171 (588)
T d1b3ua_          98 VEETVVRDKAVESLRAISHEH--S-PSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---VKAELRQYFRN  171 (588)
T ss_dssp             SSCHHHHHHHHHHHHHHHTTS--C-HHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---HHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhC--C-HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHH
Confidence            344556666677777665332  1 12223334555555555555556666666666654322211   11224566777


Q ss_pred             hhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHH
Q 008827           85 LLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKT  163 (552)
Q Consensus        85 lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~  163 (552)
                      ++++ ++.+|..+..+++.++..-...  .+    ....++.+..+++++++.+|..|+.++..++...+.    .....
T Consensus       172 l~~D~~~~VR~~a~~~l~~~~~~~~~~--~~----~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~----~~~~~  241 (588)
T d1b3ua_         172 LCSDDTPMVRRAAASKLGEFAKVLELD--NV----KSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEA  241 (588)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHTSCHH--HH----HHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHH
T ss_pred             HhccCCHHHHHHHHHHHHHHHHHhcHH--HH----HHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH----HHHHH
Confidence            7776 6789999999999988653221  01    134556677889999999999999999998875432    23345


Q ss_pred             hHHHHHHHhcCCC-CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCC-hhH
Q 008827          164 KLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL-ECC  241 (552)
Q Consensus       164 g~i~~Lv~ll~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~-~~~  241 (552)
                      ..+|.+..++++. ..||..++.+|++++..-.   ........++.+..++.++  ++.+|..++.++..++..- ...
T Consensus       242 ~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d~--~~~vr~~a~~~l~~~~~~l~~~~  316 (588)
T d1b3ua_         242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSADC  316 (588)
T ss_dssp             HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHTSCTTT
T ss_pred             HHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHHhcc--chHHHHHHHHHHHHHHHHHhhhh
Confidence            5788888888754 5689999999988864211   1122345678888888876  4889999999999887632 222


Q ss_pred             HHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 008827          242 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVV  321 (552)
Q Consensus       242 ~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~  321 (552)
                      .....-..++|.+...+++.++.+|..++.++..++.....   . -.....+|.+..++++++++++..+..++..+..
T Consensus       317 ~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~---~-~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~  392 (588)
T d1b3ua_         317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE  392 (588)
T ss_dssp             HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred             hhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch---h-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHh
Confidence            33333456889999999999999999999888877643221   1 1234578899999999999999999998887764


Q ss_pred             CCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHH
Q 008827          322 DFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALV  401 (552)
Q Consensus       322 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L  401 (552)
                      ..+.   .......++.+..++.+.+..+|..++..+..++...+++    .......+.+..++.++...++..|++++
T Consensus       393 ~~~~---~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~D~~~~VR~~A~~~L  465 (588)
T d1b3ua_         393 VIGI---RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAATSNL  465 (588)
T ss_dssp             HSCH---HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred             hcch---hhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChH----hHHHHHHHHHHhhccCCchhHHHHHHHHH
Confidence            3322   1122457788999999999999999999998886532221    12233566788889999999999999999


Q ss_pred             HHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 008827          402 RNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ  481 (552)
Q Consensus       402 ~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~  481 (552)
                      +.++.....  +.... .  +++.+..++.+ +++.+|..++.++..+....+  .. .+.       ..++|.+.++++
T Consensus       466 ~~l~~~~~~--~~~~~-~--i~~~l~~~~~~-~~~~~R~~~~~~l~~l~~~~~--~~-~~~-------~~ilp~ll~~~~  529 (588)
T d1b3ua_         466 KKLVEKFGK--EWAHA-T--IIPKVLAMSGD-PNYLHRMTTLFCINVLSEVCG--QD-ITT-------KHMLPTVLRMAG  529 (588)
T ss_dssp             HHHHHHHCH--HHHHH-H--THHHHHHTTTC-SCHHHHHHHHHHHHHHHHHHH--HH-HHH-------HHTHHHHHHGGG
T ss_pred             HHHHHHhCc--HHHHH-H--HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHcC--hH-HHH-------HHHHHHHHHHcC
Confidence            999753211  11111 1  67777777766 888999999999988875322  22 222       467899999999


Q ss_pred             CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHh
Q 008827          482 SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN  545 (552)
Q Consensus       482 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~  545 (552)
                      ++.++||..+++++..+...-  +..     .....+.+.|.++.+|++.+||+.|..|+..++
T Consensus       530 D~v~nVR~~a~~~l~~i~~~~--~~~-----~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         530 DPVANVRFNVAKSLQKIGPIL--DNS-----TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             CSCHHHHHHHHHHHHHHGGGS--CHH-----HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHc--CcH-----hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999998521  111     122234677888889999999999999998764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.6e-20  Score=196.06  Aligned_cols=458  Identities=13%  Similarity=0.081  Sum_probs=308.7

Q ss_pred             hHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 008827           38 MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVG  116 (552)
Q Consensus        38 i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~  116 (552)
                      ++.+..++.++++.+|+.|+..+..++.......  .+.-.+|.+..+..+ ....|..|...+..+........     
T Consensus        89 l~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~--~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~-----  161 (588)
T d1b3ua_          89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSD--LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV-----  161 (588)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHH--HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH-----
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH-----
Confidence            3444444555555555555555555543222111  112233333344443 23444444444444432211110     


Q ss_pred             ccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCH
Q 008827          117 PDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKE  195 (552)
Q Consensus       117 ~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~  195 (552)
                        ....++.+.++++|+++.+|..|+.++..++....    ........+|.+..++++ ++.+|..+..++..++...+
T Consensus       162 --~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~  235 (588)
T d1b3ua_         162 --KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE----LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP  235 (588)
T ss_dssp             --HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC----HHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC
T ss_pred             --HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc----HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCC
Confidence              02245566778999999999999999999988533    234456788889998885 46789999999988875322


Q ss_pred             HHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008827          196 DMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRS  275 (552)
Q Consensus       196 ~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~  275 (552)
                      ..   ......+|.+..++.+.  ++.+|..++.+|+.++..   ..........+|.+..++++.++++|..++..+..
T Consensus       236 ~~---~~~~~i~~~l~~~~~D~--~~~Vr~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~  307 (588)
T d1b3ua_         236 QE---DLEALVMPTLRQAAEDK--SWRVRYMVADKFTELQKA---VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE  307 (588)
T ss_dssp             HH---HHHHHTHHHHHHHHTCS--SHHHHHHHHHTHHHHHHH---HCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HH---HHHHHHHHHHHHhcccc--cHHHHHHHHHhHHHHHHH---hhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHH
Confidence            11   11223567777776665  488999999999998742   22223445689999999999999999999999999


Q ss_pred             hhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHH
Q 008827          276 VSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNAL  355 (552)
Q Consensus       276 ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~  355 (552)
                      ++............-..++|.+...+.+.++.++..++.++..++...+.   .-.....++.+..+++++++.++..++
T Consensus       308 ~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~---~~~~~~l~p~l~~~l~d~~~~v~~~~~  384 (588)
T d1b3ua_         308 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNII  384 (588)
T ss_dssp             HHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHH
T ss_pred             HHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch---hHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence            87653322211123457788888999999999999999888877642221   122245788999999999999999999


Q ss_pred             HHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC-cchHHHHHhhcCchHHHHHHHhcccC
Q 008827          356 RALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR-INSVEYIFAEDGIILDAVGRQLRIAS  434 (552)
Q Consensus       356 ~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~~~~~~l~~~L~~~~  434 (552)
                      .++..+....+.    .-+....++.+..++.+.++.++..++..+..++..- ++.    +.+.  +.+.+...+.+ +
T Consensus       385 ~~l~~~~~~~~~----~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~----~~~~--l~~~l~~~l~D-~  453 (588)
T d1b3ua_         385 SNLDCVNEVIGI----RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF----FDEK--LNSLCMAWLVD-H  453 (588)
T ss_dssp             TTCHHHHHHSCH----HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG----CCHH--HHHHHHHGGGC-S
T ss_pred             HHHHHHHhhcch----hhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHh----HHHH--HHHHHHhhccC-C
Confidence            888877653332    1122345788889999999999999999998886421 111    1111  55667777776 7


Q ss_pred             chhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 008827          435 KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLH  514 (552)
Q Consensus       435 ~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~  514 (552)
                      ...|+..|+.+++.++....  .+...        ..+++.+..++.+++...|..++.++..+..    ..   .....
T Consensus       454 ~~~VR~~A~~~L~~l~~~~~--~~~~~--------~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~----~~---~~~~~  516 (588)
T d1b3ua_         454 VYAIREAATSNLKKLVEKFG--KEWAH--------ATIIPKVLAMSGDPNYLHRMTTLFCINVLSE----VC---GQDIT  516 (588)
T ss_dssp             SHHHHHHHHHHHHHHHHHHC--HHHHH--------HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH----HH---HHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhC--cHHHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH----Hc---ChHHH
Confidence            88999999999999875211  11111        4566888999999999999999999998873    11   11223


Q ss_pred             HCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          515 DAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       515 ~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      ...+++.|.+++.|+.+.||..+.++|..+...
T Consensus       517 ~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~  549 (588)
T d1b3ua_         517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             HHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            345799999999999999999999999988654

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-18  Score=163.54  Aligned_cols=193  Identities=23%  Similarity=0.271  Sum_probs=171.9

Q ss_pred             hhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHH-hcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHH
Q 008827          221 PRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD-ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR  299 (552)
Q Consensus       221 ~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~-~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~  299 (552)
                      ...++.|+.+|.+++. +.+++..+...|+++.++. +++++++++|..|+++|++++.+.+..+.. +.+.|++|.|+.
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~-~~~~~~i~~Lv~  108 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQ-VLGLGALRKLLR  108 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCchHHHHH
Confidence            4568889999999995 5677888999999998875 788999999999999999999875655555 788999999999


Q ss_pred             hhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhc
Q 008827          300 LLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELT  378 (552)
Q Consensus       300 lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~  378 (552)
                      ++. +++++++..|+++|.+++.+++..+..+.+.|+++.|+++++++++.++..++++|.+++.. +++.+..+.+.++
T Consensus       109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~  187 (264)
T d1xqra1         109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGM  187 (264)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTH
T ss_pred             HhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHHhhh
Confidence            996 67899999999999999999888888999999999999999999999999999999999874 4678889999999


Q ss_pred             HHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHH
Q 008827          379 ASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIF  416 (552)
Q Consensus       379 ~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~  416 (552)
                      ++.++.++.++++++++.++++|.+++..++.......
T Consensus       188 v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~  225 (264)
T d1xqra1         188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR  225 (264)
T ss_dssp             HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999999999999999999999999988776555443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.6e-18  Score=160.12  Aligned_cols=193  Identities=16%  Similarity=0.149  Sum_probs=166.3

Q ss_pred             chhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHh
Q 008827          178 RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDA  257 (552)
Q Consensus       178 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~  257 (552)
                      +.+..|+.+|.+++. +.++.+.+...||++.++..+.+. .++.+|..|+++|++++.+++..+..+.+.|++|.++.+
T Consensus        32 ~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          32 QEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            356678888999984 556677788999999998744433 358999999999999999889999999999999999999


Q ss_pred             cC-CCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcH
Q 008827          258 LA-HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGV  336 (552)
Q Consensus       258 L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i  336 (552)
                      +. +.++.++..++++|.+++++.+..... +...|+++.|++++.++++.++..++++|.+++...+..+..+.+.|++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v  188 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQ-FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV  188 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHH-HHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhH
Confidence            96 568899999999999999886655555 7899999999999999999999999999999998888888899999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHH
Q 008827          337 KLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIF  374 (552)
Q Consensus       337 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~  374 (552)
                      +.|+++++++++.+|..++++|.+++... +.......
T Consensus       189 ~~L~~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~~~  225 (264)
T d1xqra1         189 QQLVALVRTEHSPFHEHVLGALCSLVTDF-PQGVRECR  225 (264)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence            99999999999999999999999998744 33443333

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.4e-16  Score=172.35  Aligned_cols=476  Identities=14%  Similarity=0.132  Sum_probs=278.7

Q ss_pred             cchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhh
Q 008827           36 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF  114 (552)
Q Consensus        36 ~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~  114 (552)
                      ..++.++..++++++.++..++.++............-.-...++.+.....+ ++.+|..++.+|..+....++.....
T Consensus       172 ~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~  251 (888)
T d1qbkb_         172 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH  251 (888)
T ss_dssp             TTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTT
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            46788999999989999999999888765332211000112356777777765 56889999999998876554432111


Q ss_pred             ccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC--------------------
Q 008827          115 VGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--------------------  174 (552)
Q Consensus       115 ~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~--------------------  174 (552)
                          -.+.++.++..+++++..++..|..++..++..........-.-...+|.+...+.                    
T Consensus       252 ----l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  327 (888)
T d1qbkb_         252 ----MHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIP  327 (888)
T ss_dssp             ----TTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSC
T ss_pred             ----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhh
Confidence                13344555667789999999999988776654321000000000001111111100                    


Q ss_pred             -------------------------------------CC----CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHH--
Q 008827          175 -------------------------------------DP----GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLY--  211 (552)
Q Consensus       175 -------------------------------------~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~--  211 (552)
                                                           ++    ..++..++.+|..++....        ...++.++  
T Consensus       328 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~--------~~il~~~l~~  399 (888)
T d1qbkb_         328 DSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYR--------DELLPHILPL  399 (888)
T ss_dssp             CCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCC--------SSSHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhH--------HHHHHHHHHH
Confidence                                                 00    0123334444444443211        12244444  


Q ss_pred             --HhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHh--cccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchh
Q 008827          212 --NHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS--LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGS  287 (552)
Q Consensus       212 --~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~--~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~  287 (552)
                        +.+.++  ++..|+.|+.+++.++....+   .+..  ..++|.++..++++++.+|..++++|+.++......... 
T Consensus       400 l~~~l~s~--~~~~reaa~~alg~i~eg~~~---~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~-  473 (888)
T d1qbkb_         400 LKELLFHH--EWVVKESGILVLGAIAEGCMQ---GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD-  473 (888)
T ss_dssp             HHHTTTSS--SHHHHHHHHHHHHHHTTTSHH---HHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHH-
T ss_pred             HHHhhccc--hhHHHHHHHHHhhhhhhhHHH---HhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhh-
Confidence              444443  588999999999998754322   2211  247889999999999999999999999987643221111 


Q ss_pred             hhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCCh
Q 008827          288 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED  367 (552)
Q Consensus       288 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  367 (552)
                      -.-..+++.++..+.++++.++..|+++|.+++........... ...++.+...+...+...+..+..+++.++....+
T Consensus       474 ~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~  552 (888)
T d1qbkb_         474 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH  552 (888)
T ss_dssp             HHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGG
T ss_pred             hhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhc
Confidence            13457889999999999999999999999998753221111111 24566777777777666666655555555421111


Q ss_pred             Hh-HHHHHHhhcHHHHHhhh------------------------------------------------------------
Q 008827          368 KC-KEEIFMELTASLLASLI------------------------------------------------------------  386 (552)
Q Consensus       368 ~~-~~~i~~~~~~~~l~~ll------------------------------------------------------------  386 (552)
                      .. +..+.+ ..++.+.+..                                                            
T Consensus       553 ~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  631 (888)
T d1qbkb_         553 HLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY  631 (888)
T ss_dssp             GGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred             cccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            00 001100 0111111110                                                            


Q ss_pred             cCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhH
Q 008827          387 CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLL  466 (552)
Q Consensus       387 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~  466 (552)
                      ..++.++...++.++..+..+-.......+.... +++.+...+++ .+++++..+..+++.++..........+     
T Consensus       632 ~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~-l~~~l~~~l~~-~~~~vr~~a~~llgdl~~~~~~~~~~~l-----  704 (888)
T d1qbkb_         632 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSN-ILTLMYQCMQD-KMPEVRQSSFALLGDLTKACFQHVKPCI-----  704 (888)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSC-HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGGGTGGGH-----
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhh-HHHHHHHHhCC-CChHHHHHHHHHHHHHHHhhhHHHHHHH-----
Confidence            0122333334444444443221111122221111 56666677776 8889999999999988875544443344     


Q ss_pred             hhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCC--ccHHHHHHHHHHHH
Q 008827          467 RAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPC--LDVKLRVKTALEQF  544 (552)
Q Consensus       467 ~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~--~~v~~~a~~al~~~  544 (552)
                         ..+++.+...|.+++..++.+|+|+++.++....+    ..+... ..+++.|++++++++  ..+++.+..||+++
T Consensus       705 ---~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~----~~~py~-~~il~~L~~il~~~~~~~~v~~n~~~~lgrl  776 (888)
T d1qbkb_         705 ---ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI----EMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRL  776 (888)
T ss_dssp             ---HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGG----GGGGGS-HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH----HhhhhH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence               35678888999988999999999999999852111    111111 235788888887644  34889999999987


Q ss_pred             hh
Q 008827          545 NS  546 (552)
Q Consensus       545 ~~  546 (552)
                      ..
T Consensus       777 ~~  778 (888)
T d1qbkb_         777 GY  778 (888)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.9e-14  Score=156.71  Aligned_cols=513  Identities=12%  Similarity=0.080  Sum_probs=292.1

Q ss_pred             CcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHHHHh
Q 008827            6 SYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSL   85 (552)
Q Consensus         6 ~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L~~l   85 (552)
                      ++..+...+++++.......... ....-...++.++.++.++++.++..++.++..+......+..-.-.+.++.++..
T Consensus       184 ~~~~vr~~al~~l~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~  262 (888)
T d1qbkb_         184 SSPKIRSHAVACVNQFIISRTQA-LMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQR  262 (888)
T ss_dssp             SSSCSSSTTTHHHHGGGGCCCST-TCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTT
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            34444555666665543221111 11111356788888888899999999999998876543322111113445555555


Q ss_pred             hcC-CHHHHHHHHHHHHHHhcCChh--h----------------------------------------------------
Q 008827           86 LGG-SLIQRDASLESIATIFKNNPE--V----------------------------------------------------  110 (552)
Q Consensus        86 L~~-~~~v~~~al~~L~~l~~~~~~--~----------------------------------------------------  110 (552)
                      +++ ++.++..|+..+..+++....  .                                                    
T Consensus       263 ~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  342 (888)
T d1qbkb_         263 TQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRT  342 (888)
T ss_dssp             TTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCC
T ss_pred             cCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            554 567777777666554421100  0                                                    


Q ss_pred             -------------------------------h-------hhhccccCCccHHHHH----HHHhcCChhhHHHHHHHHHHH
Q 008827          111 -------------------------------V-------SQFVGPDTGRTLSCII----EIVKDRFARTRLLASLCLIVI  148 (552)
Q Consensus       111 -------------------------------~-------~~~~~~~~~~~l~~l~----~ll~~~~~~vr~~A~~~L~~l  148 (552)
                                                     +       ..+........++.++    +.++++++..|..|..+|..+
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i  422 (888)
T d1qbkb_         343 VAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAI  422 (888)
T ss_dssp             CCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhh
Confidence                                           0       0000001122344433    456789999999999999988


Q ss_pred             hhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHH
Q 008827          149 RNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGI  227 (552)
Q Consensus       149 ~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a  227 (552)
                      +...... ... .-..++|.+++.+++ ++.+|..++++|++++.........-+-...++.+++.+.+++  +.+++.|
T Consensus       423 ~eg~~~~-~~~-~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~--~~V~~~a  498 (888)
T d1qbkb_         423 AEGCMQG-MIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN--KRVQEAA  498 (888)
T ss_dssp             TTTSHHH-HTT-THHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSC--HHHHHHH
T ss_pred             hhhHHHH-hcc-cchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCC--HHHHHHH
Confidence            7643211 111 124588999999984 5778999999999887421110011122456778888777764  8899999


Q ss_pred             HHHHHHhhcCChhHHHHHHh--cccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc---
Q 008827          228 LLALADMCSKLECCRSRCLS--LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD---  302 (552)
Q Consensus       228 ~~aL~~l~~~~~~~~~~~~~--~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~---  302 (552)
                      +++|..++....   ..+..  ..+++.++..++......+..+..++..++..........-.-..+++.+.....   
T Consensus       499 ~~al~~l~~~~~---~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  575 (888)
T d1qbkb_         499 CSAFATLEEEAC---TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLK  575 (888)
T ss_dssp             HHHHHHHHHHHT---TSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhh---hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcc
Confidence            999999874211   11111  2467778888888888888888888888865432211110112234455554443   


Q ss_pred             CCCHHHHHHHHHHHHHhhc----CCchhHHHHHhh--CcH-----HHHHHhh-----cCCCHHHHHHHHHHHHHhcccCC
Q 008827          303 DTSTAVQVAALGAISNIVV----DFTTRRSTFIRL--GGV-----KLLVQLS-----KSMDSTIRLNALRALRNLIFLAE  366 (552)
Q Consensus       303 ~~~~~v~~~a~~aL~nl~~----~~~~~~~~~~~~--g~i-----~~L~~ll-----~~~~~~v~~~a~~aL~~l~~~~~  366 (552)
                      +.+.. ......+++.++.    ...+....+.+.  +.+     ..+....     ...+..+...++.++..+.....
T Consensus       576 ~~~~~-~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~  654 (888)
T d1qbkb_         576 DEDKD-LFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLG  654 (888)
T ss_dssp             TTCTT-HHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHT
T ss_pred             cchHH-HHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhh
Confidence            23322 2233444444432    122222111111  111     1111111     12345666677777777765433


Q ss_pred             hHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHH
Q 008827          367 DKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVL  446 (552)
Q Consensus       367 ~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L  446 (552)
                      +.....+.....++.+...+.+.++++++.+..+++.++...+......+..   +++.+...|.+ +..+++..++|++
T Consensus       655 ~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~---~~~~l~~~L~~-~~~~v~~~a~~~i  730 (888)
T d1qbkb_         655 GNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIAD---FMPILGTNLNP-EFISVCNNATWAI  730 (888)
T ss_dssp             TTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHH---HHHHHHHTCCG-GGHHHHHHHHHHH
T ss_pred             hhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHhCc-CCHHHHHHHHHHH
Confidence            3333333334567888889999999999999999999886544433222222   56777777766 6778999999999


Q ss_pred             HhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCC--hhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHh
Q 008827          447 GNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSND--SRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKN  524 (552)
Q Consensus       447 ~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~  524 (552)
                      +.++..........+        ..+++.|+..+++++  ..++.+++.+++.++.    ..++...... ..+++++..
T Consensus       731 g~ia~~~~~~~~py~--------~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~----~~p~~~~~~l-~~~~~~~~~  797 (888)
T d1qbkb_         731 GEISIQMGIEMQPYI--------PMVLHQLVEIINRPNTPKTLLENTAITIGRLGY----VCPQEVAPML-QQFIRPWCT  797 (888)
T ss_dssp             HHHHHHTGGGGGGGS--------HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHH----HCHHHHGGGG-GGTHHHHHH
T ss_pred             HHHHHHHHHHhhhhH--------HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHH----HCHHHHHhhH-HHHHHHHHH
Confidence            998864333333333        366788999998764  4589999999999985    2222222111 224555555


Q ss_pred             hhcC-CCccHHHHHHHHHHHH
Q 008827          525 MVND-PCLDVKLRVKTALEQF  544 (552)
Q Consensus       525 ll~~-~~~~v~~~a~~al~~~  544 (552)
                      .+.. .+.+-++.|...+-.+
T Consensus       798 ~l~~~~d~~ek~~~~~g~~~~  818 (888)
T d1qbkb_         798 SLRNIRDNEEKDSAFRGICTM  818 (888)
T ss_dssp             HHTTSCCSHHHHHHHHHHHHH
T ss_pred             HhccCCCcHHHHHHHHHHHHH
Confidence            4432 2333344444444333

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-12  Score=131.64  Aligned_cols=390  Identities=14%  Similarity=0.133  Sum_probs=247.6

Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhc--CChhhHHHHHHHHHHHhhhCCCcc-
Q 008827           80 KRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKD--RFARTRLLASLCLIVIRNASPCYL-  156 (552)
Q Consensus        80 ~~L~~lL~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~--~~~~vr~~A~~~L~~l~~~~~~~~-  156 (552)
                      +.|-.++..+..+|..|-..|..+...++           .+.+..+...+.+  .+..+|..|+..|.+......... 
T Consensus         4 ~il~~~~s~d~~~r~~A~~~L~~~~~~~~-----------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~   72 (458)
T d1ibrb_           4 TILEKTVSPDRLELEAAQKFLERAAVENL-----------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   72 (458)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHhcCc-----------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhh
Confidence            34444555567888888888888765431           1234455665543  456889888888887665332110 


Q ss_pred             ---------hhhhhHHhHHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHH
Q 008827          157 ---------QDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGI  227 (552)
Q Consensus       157 ---------~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a  227 (552)
                               ........+.+.+++.+.++...+..++.+++.++..+...   ..-.+.++.+++.+.+...++..++.+
T Consensus        73 ~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~  149 (458)
T d1ibrb_          73 AQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKEST  149 (458)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             hHHhhhhccCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHH
Confidence                     11123445777788888765556666777777665321100   001245788888887765567778889


Q ss_pred             HHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC--CCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCC
Q 008827          228 LLALADMCSKLECCRSRCLSLQVLKLVVDALAH--DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS  305 (552)
Q Consensus       228 ~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~--~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~  305 (552)
                      +.++..++.........-.....++.++..+.+  .+..++..+..++..+..................+.+..++.+++
T Consensus       150 l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  229 (458)
T d1ibrb_         150 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD  229 (458)
T ss_dssp             HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCC
Confidence            999988875322211111123467888888874  467899999999998875432211110233345667777888999


Q ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCCh------------------
Q 008827          306 TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED------------------  367 (552)
Q Consensus       306 ~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~------------------  367 (552)
                      ++++..++.++..++...+......+.....+.+....++.++.++..++..+..++.....                  
T Consensus       230 ~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  309 (458)
T d1ibrb_         230 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT  309 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHH
Confidence            99999999999999875554322222233445556677888999999999888887531100                  


Q ss_pred             --HhHHHHHHhhcHHHHHhhhc-------CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhH
Q 008827          368 --KCKEEIFMELTASLLASLIC-------DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI  438 (552)
Q Consensus       368 --~~~~~i~~~~~~~~l~~ll~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v  438 (552)
                        ...... .....+.+...+.       +.+..++..+..++..++...++..   +..   +++.+.+.+++ +++.+
T Consensus       310 ~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~~~---l~~~i~~~l~s-~~~~~  381 (458)
T d1ibrb_         310 SKFYAKGA-LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---VPH---VLPFIKEHIKN-PDWRY  381 (458)
T ss_dssp             CCCHHHHH-HHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH---HHH---HHHHHHHHTTC-SSHHH
T ss_pred             HHHHHHHH-HHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh---hhH---HHHHHHHHhcC-CCHHH
Confidence              000111 1123444444443       2334578888888888875433221   111   56677777777 88999


Q ss_pred             HHHHHHHHHhhcCCCh-hhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          439 EIQGMYVLGNVATGKE-SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       439 ~~~a~~~L~~la~~~~-~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                      +..++.+|+.++.+.. ......+        ..+++.++..++++++.||.+|+|+|++++
T Consensus       382 r~aal~~l~~i~~~~~~~~~~~~l--------~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~  435 (458)
T d1ibrb_         382 RDAAVMAFGCILEGPEPSQLKPLV--------IQAMPTLIELMKDPSVVVRDTAAWTVGRIC  435 (458)
T ss_dssp             HHHHHHHHHHTSSSSCTTTTCTTT--------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHhHHHHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999997542 1222222        467789999999999999999999999987

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=2.1e-11  Score=132.27  Aligned_cols=515  Identities=15%  Similarity=0.159  Sum_probs=286.5

Q ss_pred             CCCcHHHHHHHHHHHHHHHcC--CCCCCcccccccchHHHHHhhcCCC-CcchHHHHHHHHhhcCChhhHHHHHhcC---
Q 008827            4 LKSYMEVVDAGARSLKMIYQS--KMAPKYDFLQEENMEFLLSLLNNES-ENVSGLGASIISHSCKTSLEQKLLFDAG---   77 (552)
Q Consensus         4 ~~~~~~~~~~~l~~l~~l~~~--~~~~~~~~~~~~~i~~l~~ll~~~~-~~~~~~a~~~l~~~~~~~~~~~~l~~~g---   77 (552)
                      .+++..+...+..++..+...  |...   |  ++.++.++..+.+++ ..++..+..++..+|........-....   
T Consensus       105 ~~~~~~vr~~~a~~i~~i~~~~~p~~~---w--peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~  179 (861)
T d2bpta1         105 VSIEPRIANAAAQLIAAIADIELPHGA---W--PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNN  179 (861)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHGGGTC---C--HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhCCcCc---h--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            355666777777777777543  2112   2  356788888887655 4577788889988875432211000111   


Q ss_pred             chHHHHHhhcC---CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCC
Q 008827           78 VLKRLTSLLGG---SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC  154 (552)
Q Consensus        78 ~i~~L~~lL~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~  154 (552)
                      .+..++..+.+   +..++..++.++..+....+.......  .....++.+...++++++.+|..+..++..+....+.
T Consensus       180 il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~  257 (861)
T d2bpta1         180 ILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREG--ERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT  257 (861)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHH--HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhh--hhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            22333333332   468999999999998765433211000  0023455567788999999999999999998875443


Q ss_pred             cchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCCHHHHHHH--------------------------------
Q 008827          155 YLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLA--------------------------------  201 (552)
Q Consensus       155 ~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~~~~~~~~--------------------------------  201 (552)
                      ...+ ....-..+.+....+ .++.++..+...+..++..........                                
T Consensus       258 ~~~~-~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~  336 (861)
T d2bpta1         258 FMKP-YMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQ  336 (861)
T ss_dssp             GCHH-HHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHH-HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2211 111111122222222 233455554444443332111000000                                


Q ss_pred             -------------------------HHhCcHHHHHHhhhc--CCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHH
Q 008827          202 -------------------------FEVNGVDKLYNHLQK--GSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLV  254 (552)
Q Consensus       202 -------------------------~~~~~i~~L~~~L~~--~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l  254 (552)
                                               .....++.+...+..  .+.++..++.+..+++.+..........-.-...++.+
T Consensus       337 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l  416 (861)
T d2bpta1         337 NEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI  416 (861)
T ss_dssp             CCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred             hccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence                                     000112222211110  11235567777777777765332221111223578899


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh---cCCCHHHHHHHHHHHHHhhcCCchhHH-HH
Q 008827          255 VDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL---DDTSTAVQVAALGAISNIVVDFTTRRS-TF  330 (552)
Q Consensus       255 v~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL---~~~~~~v~~~a~~aL~nl~~~~~~~~~-~~  330 (552)
                      +..+.++++.+|..+++++..++......    +.....++.++..+   .+.++.++..+++++.+++........ .+
T Consensus       417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  492 (861)
T d2bpta1         417 LNLMNDQSLQVKETTAWCIGRIADSVAES----IDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPI  492 (861)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHHHHGGG----SCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGG
T ss_pred             HHHhcCcchhhhhHHHHHHHHHHHHhchh----hhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchh
Confidence            99999999999999999999997653321    22234445544443   245788888888888877642111000 00


Q ss_pred             --HhhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhcccCChHhHHHHHH--hhcHHHHHhhhcCCC-----------hhH
Q 008827          331 --IRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKCKEEIFM--ELTASLLASLICDPE-----------PSV  393 (552)
Q Consensus       331 --~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~--~~~~~~l~~ll~~~~-----------~~v  393 (552)
                        .....+..++.....  .+..++..+..++..+...........+..  ....+.+...+....           ..+
T Consensus       493 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  572 (861)
T d2bpta1         493 YNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQEL  572 (861)
T ss_dssp             GGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHH
T ss_pred             hHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence              001234455555443  345688888888888876544433322211  122333433333211           123


Q ss_pred             HHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhH
Q 008827          394 QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ  473 (552)
Q Consensus       394 ~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v  473 (552)
                      +..+...+..+....+.........   +++.+...+....+..++..++.+++.++..........+        ..++
T Consensus       573 ~~~~~~~l~~~~~~~~~~~~~~~~~---l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l--------~~i~  641 (861)
T d2bpta1         573 QSNILTVLAAVIRKSPSSVEPVADM---LMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL--------ETFS  641 (861)
T ss_dssp             HHHHHHHHHHHHHHCGGGTGGGHHH---HHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--------HHHH
T ss_pred             HHHHHHHHHHHHhcchhhHHHHHHH---HHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHH--------HHHh
Confidence            4445555555543322222111111   5677777777756778899999999988864333334444        3677


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC--CccHHHHHHHHHHHHhh
Q 008827          474 SCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP--CLDVKLRVKTALEQFNS  546 (552)
Q Consensus       474 ~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~--~~~v~~~a~~al~~~~~  546 (552)
                      |.+...+++.+..++..|+.+++.++..    ..+...... ..+++.|.+.++++  +.++|..+..+++.+..
T Consensus       642 p~l~~~l~~~~~~v~~~a~~~l~~i~~~----~~~~~~~~~-~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~  711 (861)
T d2bpta1         642 PYLLKALNQVDSPVSITAVGFIADISNS----LEEDFRRYS-DAMMNVLAQMISNPNARRELKPAVLSVFGDIAS  711 (861)
T ss_dssp             HHHHHHHHCTTSHHHHHHHHHHHHHHHH----TGGGGHHHH-HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHhCCCCHHHHHHHHHHHHHHHHH----hHHHhHhhH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999998741    111111211 23567777877653  46789888888887764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.1e-10  Score=128.18  Aligned_cols=512  Identities=14%  Similarity=0.114  Sum_probs=311.9

Q ss_pred             CCCCcHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCchHHH
Q 008827            3 LLKSYMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRL   82 (552)
Q Consensus         3 ~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~i~~L   82 (552)
                      +.++|+.+.-.|+--|.+....+.....+-.....++.++++|+++++.||..|+.+|..+...-.... +  ...++.|
T Consensus        12 ~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~-~--~~l~~~L   88 (1207)
T d1u6gc_          12 MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ-V--ETIVDTL   88 (1207)
T ss_dssp             TTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH-H--HHHHHHH
T ss_pred             cCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh-H--HHHHHHH
Confidence            467888888888888888765433321122234578999999999999999999999988765422211 1  2356677


Q ss_pred             HHhhcC-CHHHHHHHHHHHHHHhcCChhhh--hhhccccCCccHHHHHHH-HhcCChhhHHHHHHHHHHHhhhCCCcchh
Q 008827           83 TSLLGG-SLIQRDASLESIATIFKNNPEVV--SQFVGPDTGRTLSCIIEI-VKDRFARTRLLASLCLIVIRNASPCYLQD  158 (552)
Q Consensus        83 ~~lL~~-~~~v~~~al~~L~~l~~~~~~~~--~~~~~~~~~~~l~~l~~l-l~~~~~~vr~~A~~~L~~l~~~~~~~~~~  158 (552)
                      ...+.+ +...+..+..+|..+...-+...  ..+....-...++.+... .+..++.+|..|...|..+....+.... 
T Consensus        89 ~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~-  167 (1207)
T d1u6gc_          89 CTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV-  167 (1207)
T ss_dssp             HHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCT-
T ss_pred             HHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhH-
Confidence            766654 56777777777776643211110  000000001122223332 3457889999999999998776543222 


Q ss_pred             hhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcC
Q 008827          159 VGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK  237 (552)
Q Consensus       159 ~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~  237 (552)
                       -....+++.|+..+++ ...+|..|+.+|+.++...+..    .-...++.+++.+.... ....+..++.+++.++..
T Consensus       168 -~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~----~~~~~~~~ll~~l~~~~-~~~~~~~~~~~l~~l~~~  241 (1207)
T d1u6gc_         168 -NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELSKND-SMSTTRTYIQCIAAISRQ  241 (1207)
T ss_dssp             -TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTC-SSCSCTTHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHH
Confidence             1234578888888874 4568999999999998654431    11234667777665542 344566677788887753


Q ss_pred             ChhHHHHHHh--cccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhh--------------
Q 008827          238 LECCRSRCLS--LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL--------------  301 (552)
Q Consensus       238 ~~~~~~~~~~--~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL--------------  301 (552)
                      .+.   .+..  ..++|.+...+++++.++|..+..++..+....+.....  ....+++.++..+              
T Consensus       242 ~~~---~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~--~~~~ii~~~l~~l~~dp~~~~~~~~~~  316 (1207)
T d1u6gc_         242 AGH---RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYP--HVSTIINICLKYLTYDPNYNYDDEDED  316 (1207)
T ss_dssp             SSG---GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHH--HHHHHHHHHTTCCCCC-----------
T ss_pred             cch---hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhh--hHHHHHHHHHHHHhcCcchhhhhHHHH
Confidence            322   1111  357999999999999999999999999887654332111  1111222222211              


Q ss_pred             -----------------------cCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827          302 -----------------------DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL  358 (552)
Q Consensus       302 -----------------------~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL  358 (552)
                                             .+..+.+|..|+.+|..+....+.....+. ...++.++..+.+.++.+|..++.++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~-~~~~~~L~~~l~d~~~~vr~~~~~~l  395 (1207)
T d1u6gc_         317 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAY  395 (1207)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHH
T ss_pred             HhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhcCCchHHHHHHHHHH
Confidence                                   233467899999999998876554433333 46889999999999999999999988


Q ss_pred             HHhcccCChH---------------hHHHHH--HhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc
Q 008827          359 RNLIFLAEDK---------------CKEEIF--MELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI  421 (552)
Q Consensus       359 ~~l~~~~~~~---------------~~~~i~--~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~  421 (552)
                      ..+.....+.               ....+.  -...++.+.+.+.+.++.++..++.++..+....+......+..   
T Consensus       396 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~---  472 (1207)
T d1u6gc_         396 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV---  472 (1207)
T ss_dssp             HHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHH---
T ss_pred             HHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHh---
Confidence            8775321100               001111  12345667778889999999999999998875433211111111   


Q ss_pred             hHHHHHHHhccc-CchhHHHHHHHHHHhhcCCCh-hhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          422 ILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKE-SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       422 ~~~~l~~~L~~~-~~~~v~~~a~~~L~~la~~~~-~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                      +++.+...+... ....++..++..+..+..... ......+        ..+.+.+...+.+..+.++..+..++..+.
T Consensus       473 ~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~--------~~l~~~~~~~~~~~~~~i~~~al~~~~~l~  544 (1207)
T d1u6gc_         473 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV--------QALVPPVVACVGDPFYKITSEALLVTQQLV  544 (1207)
T ss_dssp             HHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH--------TTTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHH--------HhhhhhHHHHHccccHHHHHHHHHHHHHHH
Confidence            445555555542 344677888888888775332 2222222        456678888888889999888887776664


Q ss_pred             CC-------CCCCCHHHHHHHHHCCcHHHHHhhhc--CCCccHHHHHHHHHHHHhh
Q 008827          500 CS-------SSPGSSGRLVKLHDAGIVSHVKNMVN--DPCLDVKLRVKTALEQFNS  546 (552)
Q Consensus       500 ~~-------~~~~~~~~~~~l~~~g~~~~L~~ll~--~~~~~v~~~a~~al~~~~~  546 (552)
                      ..       ...........+     ++.+...+.  +.+.++++++..++..+..
T Consensus       545 ~~l~~~~~~~~~~~~~~~~~l-----~~~~~~~l~~~~~~~e~~~~al~~l~~l~~  595 (1207)
T d1u6gc_         545 KVIRPLDQPSSFDATPYIKDL-----FTCTIKRLKAADIDQEVKERAISCMGQIIC  595 (1207)
T ss_dssp             HHHCCSSSCCCCCCHHHHHHH-----HHHHHHHHSCSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhccchhhhhHHHHHHH-----HHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            21       011112222222     344444443  3455678888777776653

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.9e-11  Score=138.23  Aligned_cols=477  Identities=13%  Similarity=0.132  Sum_probs=293.5

Q ss_pred             hHHHHHhhcCCCCcchHHHHHHHHhhcCChhh-HHHHHhcCchHHHHHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhc
Q 008827           38 MEFLLSLLNNESENVSGLGASIISHSCKTSLE-QKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV  115 (552)
Q Consensus        38 i~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~-~~~l~~~g~i~~L~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~  115 (552)
                      |..+++-++++|++.|..|+.-|.+....+.. -..-.....++.++++|.. +.+||..|++||+.++...++..  + 
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~--~-   81 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ--V-   81 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH--H-
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh--H-
Confidence            55677778899999999888766664322111 0000112367889999986 78999999999999986543321  1 


Q ss_pred             cccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCc----chhhhhHHhHHHHHHHhcCC--CCchhchHHHHHHH
Q 008827          116 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCY----LQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSS  189 (552)
Q Consensus       116 ~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~----~~~~~~~~g~i~~Lv~ll~~--~~~v~~~a~~~L~~  189 (552)
                          ...+..++..+.+++..+|..+..+|..+...-+..    .....+....++.+...+..  +..++..+..++..
T Consensus        82 ----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          82 ----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             ----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence                345666777788889999999999988876543211    11222334455556655553  34578888888887


Q ss_pred             hhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcC-CCCHHHHHH
Q 008827          190 LIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDVRSA  268 (552)
Q Consensus       190 l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~-~~~~~v~~~  268 (552)
                      +.......-. -.....++.++..+.++  .+.+|..|+.+|+.++...+..    .-...++.++..+. +.+..++..
T Consensus       158 l~~~~g~~l~-~~~~~il~~l~~~l~~~--~~~vR~~A~~~l~~l~~~~~~~----~~~~~~~~ll~~l~~~~~~~~~~~  230 (1207)
T d1u6gc_         158 MLSRQGGLLV-NFHPSILTCLLPQLTSP--RLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRT  230 (1207)
T ss_dssp             HHHHTCSSCT-TTHHHHHHHHGGGGGCS--SHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTT
T ss_pred             HHHHhhHhhH-HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHccCCCHHHHHH
Confidence            7542211000 00122456777777765  3789999999999997643221    11235666666554 566777888


Q ss_pred             HHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHh------
Q 008827          269 ACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL------  342 (552)
Q Consensus       269 a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~l------  342 (552)
                      ++.++..+++..+.....  .-..++|.++..+.++++++++.+..++..++...+....... ...++.+.++      
T Consensus       231 ~~~~l~~l~~~~~~~~~~--~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~ii~~~l~~l~~dp~  307 (1207)
T d1u6gc_         231 YIQCIAAISRQAGHRIGE--YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPN  307 (1207)
T ss_dssp             HHHHHHHHHHHSSGGGTT--SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC--
T ss_pred             HHHHHHHHHHHcchhhHH--HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhH-HHHHHHHHHHHhcCcc
Confidence            889999998764432111  2357899999999999999999999999888765432111100 0111111111      


Q ss_pred             -------------------------------hcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCCh
Q 008827          343 -------------------------------SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP  391 (552)
Q Consensus       343 -------------------------------l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~  391 (552)
                                                     ..+....+|..++.+|..+....+ +.-... -...++.++..+.+.++
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~-~~l~~~-~~~~~~~L~~~l~d~~~  385 (1207)
T d1u6gc_         308 YNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEF-YKTVSPALISRFKEREE  385 (1207)
T ss_dssp             ----------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHH-HTTTHHHHHSTTSCSSS
T ss_pred             hhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHHH-HHHHHHHHHHHhcCCch
Confidence                                           112345688899999998876433 222222 23468889999999999


Q ss_pred             hHHHHHHHHHHHhhcCCcchH----------------HHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChh
Q 008827          392 SVQEQALALVRNLVDGRINSV----------------EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES  455 (552)
Q Consensus       392 ~v~~~a~~~L~~l~~~~~~~~----------------~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~  455 (552)
                      .++..+..++..+........                ..+......+++.+.+.+.+ .++.++..++.++..+....+.
T Consensus       386 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~-~~~~~r~~~~~~l~~l~~~~~~  464 (1207)
T d1u6gc_         386 NVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE-KSVKTRQCCFNMLTELVNVLPG  464 (1207)
T ss_dssp             HHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHcch
Confidence            999999988887763211110                00111111145666666666 7888999999988887753221


Q ss_pred             hHHHHHHHhhHhhhhhhHHHHHHhhcCC--ChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccH
Q 008827          456 HKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDV  533 (552)
Q Consensus       456 ~~~~i~~~~~~~~~~~~v~~Lv~lL~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v  533 (552)
                      .....+        ...++.+...+.+.  ...++..+..++..+.....   .+.... .-....+.+...+.++...+
T Consensus       465 ~l~~~l--------~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~---~~~~~~-~~~~l~~~~~~~~~~~~~~i  532 (1207)
T d1u6gc_         465 ALTQHI--------PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHS---PQVFHP-HVQALVPPVVACVGDPFYKI  532 (1207)
T ss_dssp             TTGGGH--------HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSC---GGGGHH-HHTTTHHHHHHHHTCSSHHH
T ss_pred             HHHHhh--------HhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcc---HHHHHH-HHHhhhhhHHHHHccccHHH
Confidence            111111        23345666666654  45688889999988875221   111122 23455677777778777777


Q ss_pred             HHHHHHHHHHHhh
Q 008827          534 KLRVKTALEQFNS  546 (552)
Q Consensus       534 ~~~a~~al~~~~~  546 (552)
                      +..+..++..+..
T Consensus       533 ~~~al~~~~~l~~  545 (1207)
T d1u6gc_         533 TSEALLVTQQLVK  545 (1207)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777666554

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.1e-10  Score=121.57  Aligned_cols=432  Identities=13%  Similarity=0.100  Sum_probs=263.4

Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhc--CChhhHHHHHHHHHHHhhhCCCc--
Q 008827           80 KRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKD--RFARTRLLASLCLIVIRNASPCY--  155 (552)
Q Consensus        80 ~~L~~lL~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~--~~~~vr~~A~~~L~~l~~~~~~~--  155 (552)
                      +.|-..+..+..+|..|-..|..+...++           .+.+..+...+.+  .+..+|..|+-.|.|........  
T Consensus         5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~-----------~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~   73 (876)
T d1qgra_           5 TILEKTVSPDRLELEAAQKFLERAAVENL-----------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   73 (876)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHhcCh-----------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchh
Confidence            34444444466788888888877664321           2234455554543  45678999999998876533111  


Q ss_pred             --------chhhhhHHhHHHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHH
Q 008827          156 --------LQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGI  227 (552)
Q Consensus       156 --------~~~~~~~~g~i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a  227 (552)
                              ..+......+...+++.+.+++.++..++.+++.++..+-....   =.+.++.|++.+.+++..+..++.+
T Consensus        74 ~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~~~~~~a~~i~~i~~~~~p~~~---Wpeli~~L~~~l~~~~~~~~~~~~~  150 (876)
T d1qgra_          74 AQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKEST  150 (876)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSSCHHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             hhhhcccccCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHCCccc---cHHHHHHHHHHhcCCCCcHHHHHHH
Confidence                    01122344566778888876556667788888887642100000   0245788888787765556788999


Q ss_pred             HHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC--CCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCC
Q 008827          228 LLALADMCSKLECCRSRCLSLQVLKLVVDALAH--DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS  305 (552)
Q Consensus       228 ~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~--~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~  305 (552)
                      +.+|..++.+-......-.-..+++.++..+.+  .+..++..+..++.+................-+++.+...+++++
T Consensus       151 l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~  230 (876)
T d1qgra_         151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD  230 (876)
T ss_dssp             HHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCC
Confidence            999999875321111111112478888888864  457899999998887754322111000122235566777778999


Q ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHH--------------
Q 008827          306 TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE--------------  371 (552)
Q Consensus       306 ~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~--------------  371 (552)
                      ++++..++.++..++..++..-...+.....+.+.....+.++.++..++..+..++... .....              
T Consensus       231 ~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~  309 (876)
T d1qgra_         231 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE-MDLAIEASEAAEQGRPPEH  309 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSCCSS
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHhhhhHHH
Confidence            999999999999998766554334444456666777788888889888888777765421 10000              


Q ss_pred             ------HHHHhhcHHHHHhhhcC-------CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhH
Q 008827          372 ------EIFMELTASLLASLICD-------PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI  438 (552)
Q Consensus       372 ------~i~~~~~~~~l~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v  438 (552)
                            .......++.+...+..       ++..++..+..++..++...++.   ++..   +++.+.+.+.+ +++..
T Consensus       310 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~~---~~~~i~~~l~~-~~~~~  382 (876)
T d1qgra_         310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IVPH---VLPFIKEHIKN-PDWRY  382 (876)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GHHH---HHHHHHHHTTC-SSHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh---hhhh---hHHHHHHhhcc-chHHH
Confidence                  00111223444444421       23346777777776665432211   1110   45556666666 88899


Q ss_pred             HHHHHHHHHhhcCCCh-hhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCC--CCCHHHHHHHHH
Q 008827          439 EIQGMYVLGNVATGKE-SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSS--PGSSGRLVKLHD  515 (552)
Q Consensus       439 ~~~a~~~L~~la~~~~-~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~l~~  515 (552)
                      +..++..++.+..+.. ......+        ..+++.+...+.++++.+|..++|+++.++....  ....+...    
T Consensus       383 r~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~----  450 (876)
T d1qgra_         383 RDAAVMAFGCILEGPEPSQLKPLV--------IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA----  450 (876)
T ss_dssp             HHHHHHHHHHTSSSSCHHHHHHHH--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH----
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHH--------HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhh----
Confidence            9999999999987543 2223333        4667889999999999999999999999873100  00011111    


Q ss_pred             CCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          516 AGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       516 ~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                       ..++.+...+. +++.++.++.+++..+.+.
T Consensus       451 -~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~  480 (876)
T d1qgra_         451 -PLLQCLIEGLS-AEPRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             -HHHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence             12344444444 3678889999999887653

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=1e-10  Score=108.95  Aligned_cols=255  Identities=16%  Similarity=0.123  Sum_probs=190.6

Q ss_pred             ccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcCC-CCchhchHHHHHHHhhcCCHHHHH
Q 008827          121 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQK  199 (552)
Q Consensus       121 ~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~v~~~a~~~L~~l~~~~~~~~~  199 (552)
                      .....++++++|+++.+|..|+..|..+..            ...+|.|++++++ ++.++..|+.+|.++.......  
T Consensus        19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~--   84 (276)
T d1oyza_          19 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE--   84 (276)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH--
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc--
Confidence            345678899999999999999999986632            3578999999984 5679999999999886433221  


Q ss_pred             HHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcc
Q 008827          200 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRS  279 (552)
Q Consensus       200 ~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~  279 (552)
                          ...++.+...+.+. .++.++..++.+|+.++...+..     ....++.+...+.+.++.++..++.++..+.  
T Consensus        85 ----~~~~~~l~~~~l~d-~~~~vr~~a~~aL~~~~~~~~~~-----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~--  152 (276)
T d1oyza_          85 ----DNVFNILNNMALND-KSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIN--  152 (276)
T ss_dssp             ----HHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred             ----cchHHHHHHHHhcC-CChhHHHHHHHHHHHHccccchh-----hHHHHHHHHHHhcCcchHHHHHHHHHHhhcc--
Confidence                11244555544433 35889999999999988644322     1235788888999999999999988775432  


Q ss_pred             cccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 008827          280 IKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR  359 (552)
Q Consensus       280 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~  359 (552)
                                +...++.+..++.+.+..++..+..++.+......         ...+.+...+.+.+..++..+..+++
T Consensus       153 ----------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~al~  213 (276)
T d1oyza_         153 ----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLS  213 (276)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             ----------hHHHHHHHHHhcccccchhhhhHHHHHHhhhcccc---------ccchhhhhhhhhhhhhhhhhhccccc
Confidence                      34567889999999999999999999887765443         24456778888999999999999998


Q ss_pred             HhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHH
Q 008827          360 NLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIE  439 (552)
Q Consensus       360 ~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~  439 (552)
                      .+..            ...++.|++.+.++  +++..++++|+.+.  ++.           .++.|..+|....+.+++
T Consensus       214 ~~~~------------~~~~~~L~~~l~d~--~vr~~a~~aL~~ig--~~~-----------~~~~L~~~l~~~~d~~vr  266 (276)
T d1oyza_         214 YRKD------------KRVLSVLCDELKKN--TVYDDIIEAAGELG--DKT-----------LLPVLDTMLYKFDDNEII  266 (276)
T ss_dssp             HTTC------------GGGHHHHHHHHTSS--SCCHHHHHHHHHHC--CGG-----------GHHHHHHHHTTSSCCHHH
T ss_pred             hhhh------------hhhHHHHHHHhCCh--HHHHHHHHHHHHcC--CHH-----------HHHHHHHHHccCCCHHHH
Confidence            7732            13577888888754  58889999999885  222           678888888775678899


Q ss_pred             HHHHHHHH
Q 008827          440 IQGMYVLG  447 (552)
Q Consensus       440 ~~a~~~L~  447 (552)
                      ..|+..|.
T Consensus       267 ~~A~~~L~  274 (276)
T d1oyza_         267 TSAIDKLK  274 (276)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            88887764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.1e-10  Score=108.74  Aligned_cols=254  Identities=15%  Similarity=0.109  Sum_probs=188.2

Q ss_pred             CcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc
Q 008827          205 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS  284 (552)
Q Consensus       205 ~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~  284 (552)
                      ...+.|+++|.++  ++.+|..|+.+|+.+..  +         ..+|.++.+++++++.+|..|+.+|..+.....   
T Consensus        19 ~~~~~L~~~L~d~--~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~---   82 (276)
T d1oyza_          19 LNDDELFRLLDDH--NSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK---   82 (276)
T ss_dssp             SCHHHHHHHTTCS--SHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT---
T ss_pred             CCHHHHHHHhcCC--CHHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc---
Confidence            4467888988876  49999999999998742  2         258999999999999999999999988864321   


Q ss_pred             chhhhccCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008827          285 AGSFMNETIVIPLVR-LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF  363 (552)
Q Consensus       285 ~~~~~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  363 (552)
                          .....++.+.. +++++++.++..|+.+|+++........     ...++.+...+.++++.++..++.+++.+..
T Consensus        83 ----~~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~-----~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~  153 (276)
T d1oyza_          83 ----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND  153 (276)
T ss_dssp             ----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             ----cccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh-----HHHHHHHHHHhcCcchHHHHHHHHHHhhcch
Confidence                11233444544 4578999999999999999876443322     2456788888899999999999988876632


Q ss_pred             cCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHH
Q 008827          364 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGM  443 (552)
Q Consensus       364 ~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~  443 (552)
                                  ...++.+..++.+.+..+...+..++.........           ..+.+...+.+ .+..++..+.
T Consensus       154 ------------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~  209 (276)
T d1oyza_         154 ------------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD-----------IRDCFVEMLQD-KNEEVRIEAI  209 (276)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH-----------HHHHHHHHTTC-SCHHHHHHHH
T ss_pred             ------------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc-----------cchhhhhhhhh-hhhhhhhhhc
Confidence                        23567888889999999998888888877655432           34455555655 7888999999


Q ss_pred             HHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHH
Q 008827          444 YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVK  523 (552)
Q Consensus       444 ~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~  523 (552)
                      .+++.+..                  ..+++.|+..++++  .+|..++++|+.+..               .++++.|.
T Consensus       210 ~al~~~~~------------------~~~~~~L~~~l~d~--~vr~~a~~aL~~ig~---------------~~~~~~L~  254 (276)
T d1oyza_         210 IGLSYRKD------------------KRVLSVLCDELKKN--TVYDDIIEAAGELGD---------------KTLLPVLD  254 (276)
T ss_dssp             HHHHHTTC------------------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC---------------GGGHHHHH
T ss_pred             cccchhhh------------------hhhHHHHHHHhCCh--HHHHHHHHHHHHcCC---------------HHHHHHHH
Confidence            98887532                  23456777777754  589999999998872               24688888


Q ss_pred             hhhcC-CCccHHHHHHHHHH
Q 008827          524 NMVND-PCLDVKLRVKTALE  542 (552)
Q Consensus       524 ~ll~~-~~~~v~~~a~~al~  542 (552)
                      +++.+ ++.+|+..|..+|.
T Consensus       255 ~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         255 TMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHccCCCHHHHHHHHHHHc
Confidence            87765 56788888777764

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=8.9e-10  Score=119.16  Aligned_cols=312  Identities=13%  Similarity=0.089  Sum_probs=192.5

Q ss_pred             HHHHHhhcCCCCcchHHHHHHHHhhcCChhhHHHHHhcCc---hHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhh
Q 008827           39 EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGV---LKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQ  113 (552)
Q Consensus        39 ~~l~~ll~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~g~---i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~  113 (552)
                      ..++..+.++++.++..++.+++.++..+     +.+..|   ++.|+..+.+  +..++..++.+|+.++...+.....
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~-----~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~  172 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIE-----LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQA  172 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHH-----GGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSST
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHh-----CCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            55677778888889999999998876321     112223   4556666665  4578889999999998654332221


Q ss_pred             hccccCCccHHHHHHHH--hcCChhhHHHHHHHHHHHhhhCCCcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHh
Q 008827          114 FVGPDTGRTLSCIIEIV--KDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSL  190 (552)
Q Consensus       114 ~~~~~~~~~l~~l~~ll--~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l  190 (552)
                      +.. .....+..++..+  .+.+..+|..|..++.++...-.............++.+.+.++ ++++++..+..++..+
T Consensus       173 ~~~-~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i  251 (861)
T d2bpta1         173 LVS-SSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKI  251 (861)
T ss_dssp             TGG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHH
Confidence            110 0012334444444  35668999999999998876432211122334557778888887 4567888899999888


Q ss_pred             hcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHh----------------cccHHHH
Q 008827          191 IAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS----------------LQVLKLV  254 (552)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~----------------~~~l~~l  254 (552)
                      +...+..-.... ...+..+....... .++.++..+...+..++............                ...+|.+
T Consensus       252 ~~~~~~~~~~~l-~~~l~~l~~~~~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l  329 (861)
T d2bpta1         252 MSKYYTFMKPYM-EQALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNL  329 (861)
T ss_dssp             HHHHGGGCHHHH-HHTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            754332111111 11233333222222 45778888888888776432221111111                1245566


Q ss_pred             HHhcCC-------CCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 008827          255 VDALAH-------DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR  327 (552)
Q Consensus       255 v~~L~~-------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~  327 (552)
                      ...+..       ++...+..+..++..++...+..     .-.-..+.+...+.++++..+..|..+++.++.......
T Consensus       330 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~  404 (861)
T d2bpta1         330 LNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH-----ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQ  404 (861)
T ss_dssp             HHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG-----GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchh-----hhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhh
Confidence            666642       34578888888888876653221     111223444455678899999999999999987654432


Q ss_pred             HHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008827          328 STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF  363 (552)
Q Consensus       328 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  363 (552)
                      ..-.-...++.++..+.++++.+|..++++++.++.
T Consensus       405 ~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~  440 (861)
T d2bpta1         405 RTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIAD  440 (861)
T ss_dssp             HHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHH
Confidence            222224578899999999999999999999998865

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.2e-10  Score=113.32  Aligned_cols=351  Identities=15%  Similarity=0.119  Sum_probs=213.1

Q ss_pred             HHHHHHhcCCCCchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCC-hhHHHH
Q 008827          166 INNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL-ECCRSR  244 (552)
Q Consensus       166 i~~Lv~ll~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~-~~~~~~  244 (552)
                      ++.|-.+++.+.+++..|...|..+...++        .+.+..|...+.+.+.++.+|..|.-.|.+..... +.....
T Consensus         3 ~~il~~~~s~d~~~r~~A~~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~   74 (458)
T d1ibrb_           3 ITILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ   74 (458)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhH
Confidence            455566666677888889888887765332        12356677777766556778888887777665432 222111


Q ss_pred             H----------HhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC--CCHHHHHHH
Q 008827          245 C----------LSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD--TSTAVQVAA  312 (552)
Q Consensus       245 ~----------~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a  312 (552)
                      .          ....+.+.+++.+.+++..++ .++.++..++......    -.-.+.++.+++.+.+  .++..+..+
T Consensus        75 ~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~~  149 (458)
T d1ibrb_          75 YQQRWLAIDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPV----NQWPELIPQLVANVTNPNSTEHMKEST  149 (458)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGG----TCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             HhhhhccCCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCc----ccCcchhHHHHHHHHhhcchHHHHHHH
Confidence            1          122356667788877765444 4566666665431100    1224778889998864  567888888


Q ss_pred             HHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCC
Q 008827          313 LGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE  390 (552)
Q Consensus       313 ~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~  390 (552)
                      ..++..+..........-.....++.++..+.+  .+..+|..++.++.++..................+.+..++.+++
T Consensus       150 l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  229 (458)
T d1ibrb_         150 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD  229 (458)
T ss_dssp             HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCC
Confidence            899887765333211111112456777777765  357899999999999876432222223333456777888889999


Q ss_pred             hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHH----------------------------
Q 008827          391 PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG----------------------------  442 (552)
Q Consensus       391 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a----------------------------  442 (552)
                      ++++..++.++..++...++.....+...  +...+...+.+ .+++++..+                            
T Consensus       230 ~~~~~~~~~~l~~i~~~~~~~~~~~l~~~--~~~~~~~~~~~-~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~  306 (458)
T d1ibrb_         230 TRVRVAALQNLVKIMSLYYQYMETYMGPA--LFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP  306 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGCTTTTTTT--HHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHH
Confidence            99999999999998754332211100000  11222222222 333333333                            


Q ss_pred             -----------------------------------------HHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 008827          443 -----------------------------------------MYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ  481 (552)
Q Consensus       443 -----------------------------------------~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~  481 (552)
                                                               ..++..++....+.   ++        ..+++.+...++
T Consensus       307 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~--------~~l~~~i~~~l~  375 (458)
T d1ibrb_         307 EHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV--------PHVLPFIKEHIK  375 (458)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HH--------HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh---hh--------hHHHHHHHHHhc
Confidence                                                     33333332211100   11        234567778888


Q ss_pred             CCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHHHhhh
Q 008827          482 SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  547 (552)
Q Consensus       482 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~~~~~  547 (552)
                      ++++.+|.+|+.+++.++....   .+..+.+ -..+++.|.+.++|+++.||..|.++|+++.+.
T Consensus       376 s~~~~~r~aal~~l~~i~~~~~---~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         376 NPDWRYRDAAVMAFGCILEGPE---PSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             CSSHHHHHHHHHHHHHTSSSSC---TTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcC---HhHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999984211   1111111 234688999999999999999999999999875

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.6e-08  Score=109.52  Aligned_cols=509  Identities=12%  Similarity=0.092  Sum_probs=281.9

Q ss_pred             cHHHHHHHHHHHHHHHcCCCCCCcccccccchHHHHHhhcCCC--CcchHHHHHHHHhhcCChhhH--HHHHhcCchHHH
Q 008827            7 YMEVVDAGARSLKMIYQSKMAPKYDFLQEENMEFLLSLLNNES--ENVSGLGASIISHSCKTSLEQ--KLLFDAGVLKRL   82 (552)
Q Consensus         7 ~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~--~~~~~~a~~~l~~~~~~~~~~--~~l~~~g~i~~L   82 (552)
                      +..+..+++.+|..++..-........-...++.++..+.+++  ..++..+...+.+........  ......-.++.+
T Consensus       143 ~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l  222 (876)
T d1qgra_         143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVV  222 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            4567778899988886432111001112345778888887544  457788888777654322110  011112234556


Q ss_pred             HHhhcC-CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCC-------
Q 008827           83 TSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC-------  154 (552)
Q Consensus        83 ~~lL~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~-------  154 (552)
                      ...+.+ +++++..++.+|..++...+........   ......+....++.+..++..+..++..++.....       
T Consensus       223 ~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  299 (876)
T d1qgra_         223 CEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG---PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE  299 (876)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHT---TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            666665 6789999999999988665443222110   12233345567788888888888877766542110       


Q ss_pred             ------------cchhhhhHHhHHHHHHHhcCC---C-----CchhchHHHHHHHhhcCCHHHHHHHHHhCcHHHHHHhh
Q 008827          155 ------------YLQDVGIKTKLINNLLELLDD---P-----GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHL  214 (552)
Q Consensus       155 ------------~~~~~~~~~g~i~~Lv~ll~~---~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~L  214 (552)
                                  ...........+|.+...+..   +     ..++..+..++..++..        .....++.++..+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~--------~~~~~~~~~~~~i  371 (876)
T d1qgra_         300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC--------CEDDIVPHVLPFI  371 (876)
T ss_dssp             HHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH--------HGGGGHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHH--------hhhhhhhhhHHHH
Confidence                        001111223455666666541   1     12455666666655421        1223344444433


Q ss_pred             hcC--CCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccC
Q 008827          215 QKG--SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNET  292 (552)
Q Consensus       215 ~~~--~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~  292 (552)
                      ...  +.++..++.+..+++.+..........-.-...++.+...+.++++.+|..+++++..++......    .....
T Consensus       372 ~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~  447 (876)
T d1qgra_         372 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA----AINDV  447 (876)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG----TSSTT
T ss_pred             HHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchh----hhhHH
Confidence            221  134778899999999887532222222223457899999999999999999999999998754322    22233


Q ss_pred             cHHHHHHhhc---CCCHHHHHHHHHHHHHhhcCCchhHH-----------HH--HhhCcHHHHHHhhcCC---CHHHHHH
Q 008827          293 IVIPLVRLLD---DTSTAVQVAALGAISNIVVDFTTRRS-----------TF--IRLGGVKLLVQLSKSM---DSTIRLN  353 (552)
Q Consensus       293 ~i~~Lv~lL~---~~~~~v~~~a~~aL~nl~~~~~~~~~-----------~~--~~~g~i~~L~~ll~~~---~~~v~~~  353 (552)
                      .++.++..+.   ++++.++..+++++.+++........           .+  .-...++.+...+...   +..++..
T Consensus       448 ~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~  527 (876)
T d1qgra_         448 YLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS  527 (876)
T ss_dssp             THHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred             HhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHH
Confidence            3444444331   45789999999999988742111000           00  0012445566666542   4567888


Q ss_pred             HHHHHHHhcccCChHhHHHHHHh--hcHHHHHhhhcCC------Ch-----hHHHHHHHHHHHhhcCCcch-HHHHHhhc
Q 008827          354 ALRALRNLIFLAEDKCKEEIFME--LTASLLASLICDP------EP-----SVQEQALALVRNLVDGRINS-VEYIFAED  419 (552)
Q Consensus       354 a~~aL~~l~~~~~~~~~~~i~~~--~~~~~l~~ll~~~------~~-----~v~~~a~~~L~~l~~~~~~~-~~~i~~~~  419 (552)
                      +..++..+......+....+...  ..++.+...+...      ..     ..+......+..+....... ...... .
T Consensus       528 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~  606 (876)
T d1qgra_         528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISD-V  606 (876)
T ss_dssp             HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHH-H
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHH-H
Confidence            88888877654433333333221  1233333333211      11     22333444555554332211 111111 1


Q ss_pred             CchHHHHHHHhccc-CchhHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhcCC-ChhHHHHHHHHHHh
Q 008827          420 GIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSRLRTAAVWAVLN  497 (552)
Q Consensus       420 ~~~~~~l~~~L~~~-~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~~~a~~~l~~  497 (552)
                        +++.+.+++... ++..+++.++.+++.++..........+        ..++|.+...|++. ++.++..|+.+++.
T Consensus       607 --i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l--------~~ii~~l~~~l~~~~~~~v~~~a~~~l~~  676 (876)
T d1qgra_         607 --VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM--------EAFKPFLGIGLKNYAEYQVCLAAVGLVGD  676 (876)
T ss_dssp             --HHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH--------HHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHH--------HHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence              566666666542 4567888888888887752221122222        35567888888765 46799999999988


Q ss_pred             hcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCC--CccHHHHHHHHHHHHhh
Q 008827          498 LTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP--CLDVKLRVKTALEQFNS  546 (552)
Q Consensus       498 l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~--~~~v~~~a~~al~~~~~  546 (552)
                      ++..    ....... .-..+++.+.+.++++  +.+++..+.++++.+..
T Consensus       677 l~~~----~~~~~~~-~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~  722 (876)
T d1qgra_         677 LCRA----LQSNIIP-FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL  722 (876)
T ss_dssp             HHHH----HGGGGHH-HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred             HHHH----hHHhhhh-hHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHH
Confidence            8741    1111111 1234567788877654  35788899999887753

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.56  E-value=8.9e-09  Score=81.03  Aligned_cols=110  Identities=14%  Similarity=0.187  Sum_probs=86.6

Q ss_pred             hcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCChhhHHHHHHHhh
Q 008827          386 ICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLL  465 (552)
Q Consensus       386 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~  465 (552)
                      |.++++.|+..|+++|+.+..  +            .++.|...|.+ +++.++..++++|+++..              
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~--~------------~~~~L~~~l~d-~~~~vR~~a~~~L~~~~~--------------   51 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD--E------------AFEPLLESLSN-EDWRIRGAAAWIIGNFQD--------------   51 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS--T------------THHHHHHGGGC-SCHHHHHHHHHHHGGGCS--------------
T ss_pred             CCCcCHHHHHHHHHHHHHhCH--H------------HHHHHHHHHcC-CCHHHHHHHHHHHHhcch--------------
Confidence            456777788877777766421  1            46677788887 899999999999998642              


Q ss_pred             HhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHHHHH
Q 008827          466 LRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQ  543 (552)
Q Consensus       466 ~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~al~~  543 (552)
                          .+.++.|..+|+++++.+|.+|+++|+.+..               .+.++.|.++++|++++||+.|..||..
T Consensus        52 ----~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~---------------~~~~~~L~~ll~d~~~~vr~~A~~aL~t  110 (111)
T d1te4a_          52 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------------ERVRAAMEKLAETGTGFARKVAVNYLET  110 (111)
T ss_dssp             ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ----hhhHHHHHhhhccchhHHHHHHHHHHHHhCc---------------cchHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence                2345788899999999999999999998862               1247788889999999999999988753

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.46  E-value=2.9e-08  Score=77.93  Aligned_cols=109  Identities=18%  Similarity=0.181  Sum_probs=87.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHH
Q 008827          258 LAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVK  337 (552)
Q Consensus       258 L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~  337 (552)
                      |+++++.||..|..+|..+.             ...+++|+..|+++++.+|..|+++|+++..           .+.++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~-------------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG-------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS-------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC-------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHH
Confidence            45677778777776664321             2457889999999999999999999987542           24678


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHH
Q 008827          338 LLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVR  402 (552)
Q Consensus       338 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~  402 (552)
                      .|..+++++++.+|..++++|+.+..   +         ...+.|..+++++++.++..|+.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~~---~---------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHCS---H---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhCc---c---------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            89999999999999999999998832   1         35778888999999999999988763

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=8.9e-05  Score=71.01  Aligned_cols=346  Identities=14%  Similarity=0.104  Sum_probs=191.1

Q ss_pred             CccHHHHHHHHh-cCChhhHHHHHHHHHHHhhhCCCcch--hhhhH--HhHHHHHHHhcCCCC-chhchHHHHHHHhhcC
Q 008827          120 GRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQ--DVGIK--TKLINNLLELLDDPG-RVGDEASFAFSSLIAE  193 (552)
Q Consensus       120 ~~~l~~l~~ll~-~~~~~vr~~A~~~L~~l~~~~~~~~~--~~~~~--~g~i~~Lv~ll~~~~-~v~~~a~~~L~~l~~~  193 (552)
                      +.++..++.+++ ....++.......+..+....+....  +....  ...-+.+..++..+. -+...++..++.+++.
T Consensus        73 ~~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~  152 (477)
T d1ho8a_          73 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  152 (477)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             cHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhc
Confidence            345555666554 24444444444445554443321100  00000  112344455554332 2355666677777765


Q ss_pred             CHHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHh--cccHHHHHHhcCC-----------
Q 008827          194 KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS--LQVLKLVVDALAH-----------  260 (552)
Q Consensus       194 ~~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~--~~~l~~lv~~L~~-----------  260 (552)
                      ........-..-....+.+.+... .+......++.++..+.. .+.+|..+..  ...++.++..|+.           
T Consensus       153 ~~~~~~~~e~l~~~~~~l~~l~~~-~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~  230 (477)
T d1ho8a_         153 GLHNVKLVEKLLKNNNLINILQNI-EQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  230 (477)
T ss_dssp             TTCCHHHHHHHHHCHHHHHHHHCT-TCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             cccccchHHHHHHhhHHHHHhhcc-cccchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhcccccchhh
Confidence            432211100000012333444444 245666777888888875 5788888754  3356666666642           


Q ss_pred             ------CCHHHHHHHHHHHHHhhcccccccchhhhcc--CcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCch-----h
Q 008827          261 ------DSSDVRSAACMCLRSVSRSIKNLSAGSFMNE--TIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTT-----R  326 (552)
Q Consensus       261 ------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~--~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~-----~  326 (552)
                            ....+++.++-|++-|+.+ +..... +...  +.++.++++++ .+-+.+..-++.++.|+......     .
T Consensus       231 ~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~-l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~  308 (477)
T d1ho8a_         231 ATNSNHLGIQLQYHSLLLIWLLTFN-PVFANE-LVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI  308 (477)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTS-HHHHHH-HHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcC-HHHHHH-HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence                  1247799999999999987 334433 4443  45888999986 67788999999999999864322     1


Q ss_pred             HHHHHhhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhcccCChHhH-HHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHH
Q 008827          327 RSTFIRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKCK-EEIFMELTASLLASLICDPEPSVQEQALALVRN  403 (552)
Q Consensus       327 ~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~-~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~  403 (552)
                      ...++..++++.+-.+...  .|+++... +..|......   ..+ ..-++.-.-+..-..|..               
T Consensus       309 ~~~~v~~~~l~~l~~L~~r~~~Dedl~ed-l~~L~~~L~~---~~k~lTsfd~Y~~Ev~Sg~L~W---------------  369 (477)
T d1ho8a_         309 KQLLLLGNALPTVQSLSERKYSDEELRQD-ISNLKEILEN---EYQELTSFDEYVAELDSKLLCW---------------  369 (477)
T ss_dssp             HHHHHHHCHHHHHHHHHSSCCSSHHHHHH-HHHHHHHHHH---HHHTCCHHHHHHHHHHHTCCCC---------------
T ss_pred             HHHHHHcchhHHHHHHhcCCCCCHHHHHH-HHHHHHHHHH---HHHhcCcHHHHHHHHhcCCCCC---------------
Confidence            2234555666554444333  35554332 2222222110   000 000001111111122222               


Q ss_pred             hhcCCcchH-HHHHhhc--------CchHHHHHHHhcc---------cCchhHHHHHHHHHHhhcCCChhhHHHHHHHhh
Q 008827          404 LVDGRINSV-EYIFAED--------GIILDAVGRQLRI---------ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLL  465 (552)
Q Consensus       404 l~~~~~~~~-~~i~~~~--------~~~~~~l~~~L~~---------~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~  465 (552)
                          .|.+. +..+.+.        ..++..|..+|.+         +.++.+..-||+-++.++..-|..+ .++++  
T Consensus       370 ----SP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr-~il~~--  442 (477)
T d1ho8a_         370 ----SPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESI-DVLDK--  442 (477)
T ss_dssp             ----CGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHH-HHHHH--
T ss_pred             ----CCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchh-HHHHH--
Confidence                22222 2222221        1267788888852         2467788899999999998777544 45553  


Q ss_pred             HhhhhhhHHHHHHhhcCCChhHHHHHHHHHHhhc
Q 008827          466 LRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       466 ~~~~~~~v~~Lv~lL~~~~~~~~~~a~~~l~~l~  499 (552)
                          -|+-..+++++.++|++||.+|..|+..+.
T Consensus       443 ----lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         443 ----TGGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             ----HSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             ----cCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                788899999999999999999999998775

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.33  E-value=5.6e-05  Score=72.41  Aligned_cols=320  Identities=14%  Similarity=0.121  Sum_probs=194.4

Q ss_pred             ccchHHHHHhhcC-CCCcchHHHHHHHHhhcCChhhHHHH----HhcC--chHHHHHhhcCCH-HHHHHHHHHHHHHhcC
Q 008827           35 EENMEFLLSLLNN-ESENVSGLGASIISHSCKTSLEQKLL----FDAG--VLKRLTSLLGGSL-IQRDASLESIATIFKN  106 (552)
Q Consensus        35 ~~~i~~l~~ll~~-~~~~~~~~a~~~l~~~~~~~~~~~~l----~~~g--~i~~L~~lL~~~~-~v~~~al~~L~~l~~~  106 (552)
                      ...+..++.+|+. ..+++.+++...+..+-..+..+..+    .+..  .-+++..++.+.. .+...+...+..++..
T Consensus        73 ~~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~  152 (477)
T d1ho8a_          73 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  152 (477)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             cHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhc
Confidence            4467888889874 44677788888777765444332222    2222  1134444454433 4455566666666654


Q ss_pred             Chhhh---hhhccccCCccHHHHHHHHhcCChhhHHHHHHHHHHHhhhCCCcchhhh--hHHhHHHHHHHhcC---CC--
Q 008827          107 NPEVV---SQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVG--IKTKLINNLLELLD---DP--  176 (552)
Q Consensus       107 ~~~~~---~~~~~~~~~~~l~~l~~ll~~~~~~vr~~A~~~L~~l~~~~~~~~~~~~--~~~g~i~~Lv~ll~---~~--  176 (552)
                      .....   ...     ......+-.+.+..+...+..|+.|+..+....+  .+..+  .+...++.|++.+.   +.  
T Consensus       153 ~~~~~~~~e~l-----~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~--~R~~fw~~~~~~~~~l~~il~~a~~~~~  225 (477)
T d1ho8a_         153 GLHNVKLVEKL-----LKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE--YRDVIWLHEKKFMPTLFKILQRATDSQL  225 (477)
T ss_dssp             TTCCHHHHHHH-----HHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH--HHHHHHTTHHHHHHHHHHHHHHHHC---
T ss_pred             cccccchHHHH-----HHhhHHHHHhhcccccchHHHHHHHHHHHhcCcc--HHHHHHHcccchHHHHHHHHHHHhcccc
Confidence            32211   111     1112223345578889999999999998877532  22222  23456777777764   11  


Q ss_pred             -------------CchhchHHHHHHHhhcCCHHHHHHHHHh--CcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChh-
Q 008827          177 -------------GRVGDEASFAFSSLIAEKEDMQKLAFEV--NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC-  240 (552)
Q Consensus       177 -------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~-  240 (552)
                                   ..++..++.+++-|+- ++.....+.+.  +.++.++++++... -.++..-++.+|.|++..... 
T Consensus       226 ~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~-KEKvvRv~l~~l~Nll~~~~~~  303 (477)
T d1ho8a_         226 ATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITI-KEKVSRLCISIILQCCSTRVKQ  303 (477)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHTTSSSSTT
T ss_pred             cchhhcccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhhhhhhh
Confidence                         1346788888888875 44444444443  34889999888774 466777788899999864321 


Q ss_pred             ----HHHHHHhcccHHHHHHhcCC--CCHHHHHHHHHHHHHhhccc---------------ccccch-------------
Q 008827          241 ----CRSRCLSLQVLKLVVDALAH--DSSDVRSAACMCLRSVSRSI---------------KNLSAG-------------  286 (552)
Q Consensus       241 ----~~~~~~~~~~l~~lv~~L~~--~~~~v~~~a~~~L~~ls~~~---------------~~~~~~-------------  286 (552)
                          ....++..++++.+-.+...  .++++....-..-..|....               +.++..             
T Consensus       304 ~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~  383 (477)
T d1ho8a_         304 HKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNI  383 (477)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHS
T ss_pred             hhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHH
Confidence                22344555666665444432  35554333322211111110               011111             


Q ss_pred             -hhhc--cCcHHHHHHhhc----------CCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHH
Q 008827          287 -SFMN--ETIVIPLVRLLD----------DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN  353 (552)
Q Consensus       287 -~~~~--~~~i~~Lv~lL~----------~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~  353 (552)
                       +|.+  ..++..|+++|+          +.|+.+...||.=++.++..++..|..+-+.|+=..+++++.++|++||.+
T Consensus       384 ~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~e  463 (477)
T d1ho8a_         384 DEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYE  463 (477)
T ss_dssp             GGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHH
T ss_pred             HhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHH
Confidence             1222  245788999995          247889999999999999999988877777888888999999999999999


Q ss_pred             HHHHHHHhcc
Q 008827          354 ALRALRNLIF  363 (552)
Q Consensus       354 a~~aL~~l~~  363 (552)
                      |+.++..+..
T Consensus       464 AL~avQklm~  473 (477)
T d1ho8a_         464 ALKATQAIIG  473 (477)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987643

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=97.45  E-value=0.028  Score=51.85  Aligned_cols=203  Identities=14%  Similarity=0.140  Sum_probs=123.7

Q ss_pred             HHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCC----CCHHHHHHHHHHHHHhhccccc
Q 008827          207 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH----DSSDVRSAACMCLRSVSRSIKN  282 (552)
Q Consensus       207 i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~----~~~~v~~~a~~~L~~ls~~~~~  282 (552)
                      +..+.+++.+....+......+..+.....-++         ..+..+.+++++    .++.++..+.-+++++.+..-.
T Consensus        90 ~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~Pt~---------~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~  160 (336)
T d1lsha1          90 LLFLKRTLASEQLTSAEATQIVASTLSNQQATR---------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA  160 (336)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHTCCCCH---------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCH---------HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhc
Confidence            556777777664444333344444443332121         245666677764    4678888888888888643111


Q ss_pred             ccchhhhccCcHHHHHHhh----cCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC-------CCHHHH
Q 008827          283 LSAGSFMNETIVIPLVRLL----DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-------MDSTIR  351 (552)
Q Consensus       283 ~~~~~~~~~~~i~~Lv~lL----~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-------~~~~v~  351 (552)
                      ...  -....+++.+...+    +..+.+-+..+..+|+|+-.  +         +.++.+..++.+       .+..+|
T Consensus       161 ~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR  227 (336)
T d1lsha1         161 NTV--SCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQ  227 (336)
T ss_dssp             TCS--SCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHH
T ss_pred             CCC--CCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHH
Confidence            000  12234455555554    46677778888999999852  2         456777777754       257899


Q ss_pred             HHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhc--CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHH
Q 008827          352 LNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQ  429 (552)
Q Consensus       352 ~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~  429 (552)
                      ..|+++|.+++... |.        .+.+.+..++.  ..+++++..|..+|-..   +|.. .        .+..+...
T Consensus       228 ~aAi~Alr~~~~~~-p~--------~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t---~P~~-~--------~l~~i~~~  286 (336)
T d1lsha1         228 AEAIMALRNIAKRD-PR--------KVQEIVLPIFLNVAIKSELRIRSCIVFFES---KPSV-A--------LVSMVAVR  286 (336)
T ss_dssp             HHHHHTTTTGGGTC-HH--------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHT---CCCH-H--------HHHHHHHH
T ss_pred             HHHHHHHHHhhhcC-cH--------HHHHHHHHHHcCCCCChHHHHHHHHHHHhc---CCCH-H--------HHHHHHHH
Confidence            99999999997743 31        12234444443  45678888877666432   2211 0        45666677


Q ss_pred             hcccCchhHHHHHHHHHHhhcCC
Q 008827          430 LRIASKAEIEIQGMYVLGNVATG  452 (552)
Q Consensus       430 L~~~~~~~v~~~a~~~L~~la~~  452 (552)
                      +..+++.+|.......|.+++..
T Consensus       287 l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         287 LRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHhCcHHHHHHHHHHHHHHHHhC
Confidence            77767888888888888888873

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.41  E-value=8e-05  Score=65.45  Aligned_cols=42  Identities=24%  Similarity=0.175  Sum_probs=29.6

Q ss_pred             HhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHH
Q 008827          256 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAI  316 (552)
Q Consensus       256 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL  316 (552)
                      .+|.++++++|..|..       +            -.+..|..+++|++++||..|+..|
T Consensus        49 ~~l~~p~~e~Ra~Aa~-------~------------a~~~~L~~Ll~D~d~~VR~~AA~~L   90 (233)
T d1lrva_          49 QYLADPFWERRAIAVR-------Y------------SPVEALTPLIRDSDEVVRRAVAYRL   90 (233)
T ss_dssp             GGTTCSSHHHHHHHHT-------T------------SCGGGGGGGTTCSSHHHHHHHHTTS
T ss_pred             HHhcCCcHHHHHHHHh-------c------------CCHHHHHHHhcCCCHHHHHHHHHHc
Confidence            4778899999976642       1            1134567788888888888887654

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.35  E-value=9.1e-05  Score=65.07  Aligned_cols=46  Identities=17%  Similarity=0.190  Sum_probs=26.3

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHH
Q 008827          251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGA  315 (552)
Q Consensus       251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~a  315 (552)
                      +..|..+++++++.||..++..|.                   .+.|..++.+++++|+..++..
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp-------------------~~~L~~L~~D~d~~VR~~aa~~  113 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLP-------------------REQLSALMFDEDREVRITVADR  113 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSC-------------------SGGGGGTTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcC-------------------HHHHHHHhcCCChhHHHHHHhc
Confidence            445666777777777777754220                   1234455566666666655543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=0.15  Score=53.83  Aligned_cols=133  Identities=9%  Similarity=0.069  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhc------CCCHHHHHHHHHHHHHhhcCCchh-----------
Q 008827          264 DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD------DTSTAVQVAALGAISNIVVDFTTR-----------  326 (552)
Q Consensus       264 ~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~------~~~~~v~~~a~~aL~nl~~~~~~~-----------  326 (552)
                      ..|.++..++..++...+.     .....+.+.+...+.      +.++..++.+..+++.+.......           
T Consensus       376 ~~r~~a~~ll~~l~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~  450 (959)
T d1wa5c_         376 TRRRACTDFLKELKEKNEV-----LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL  450 (959)
T ss_dssp             CHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred             cHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchh
Confidence            4577777778777665221     111222333333332      356778888888887765322110           


Q ss_pred             -HHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 008827          327 -RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV  405 (552)
Q Consensus       327 -~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~  405 (552)
                       ...++. +.+...+.........+|..++|+++.++....++..     ...++.+++.|.+++..++..|++++..++
T Consensus       451 ~~~~~l~-~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~-----~~~~~~l~~~L~~~~~~V~~~a~~al~~~~  524 (959)
T d1wa5c_         451 NVVDFFT-KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL-----IELMPILATFLQTDEYVVYTYAAITIEKIL  524 (959)
T ss_dssp             CHHHHHH-HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHH-HHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHH-----HHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence             001111 1111112222334577999999999999875543322     245778889999999999999999999998


Q ss_pred             cC
Q 008827          406 DG  407 (552)
Q Consensus       406 ~~  407 (552)
                      ..
T Consensus       525 ~~  526 (959)
T d1wa5c_         525 TI  526 (959)
T ss_dssp             TC
T ss_pred             Hh
Confidence            64

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=0.15  Score=53.91  Aligned_cols=425  Identities=11%  Similarity=0.080  Sum_probs=206.5

Q ss_pred             hHHHHHhhcC--CHHHHHHHHHHHHHHhcCChhhhhhhccccCCccHHHHHHHHhc--CChhhHHHHHHHHHHHhhhC--
Q 008827           79 LKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKD--RFARTRLLASLCLIVIRNAS--  152 (552)
Q Consensus        79 i~~L~~lL~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~--~~~~vr~~A~~~L~~l~~~~--  152 (552)
                      ++.+..+|..  ++..|..|-..|..+... |            +....++..+.+  .+..+|..|+-.|.|.....  
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~-p------------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~   70 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLETQ-D------------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWV   70 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHHTS-T------------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSB
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHHcC-C------------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            3556667663  456677787777775432 2            334455665543  35689999999999877642  


Q ss_pred             C---CcchhhhhHHhHHHHHHHhcC-CCCchhchHHHHHHHhhcCC-HHHHHHHHHhCcHHHHHHhhhcCCCChhhHHHH
Q 008827          153 P---CYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEK-EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGI  227 (552)
Q Consensus       153 ~---~~~~~~~~~~g~i~~Lv~ll~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~L~~~~~~~~~~~~a  227 (552)
                      +   ........+..+-..|+..+. .+..++...+.+++.++..+ |.. .    .+.++.+.+.+.++  ++..+..+
T Consensus        71 ~~~~~~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~-W----p~ll~~l~~~l~s~--~~~~~~~~  143 (959)
T d1wa5c_          71 DENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDR-W----PTLLSDLASRLSND--DMVTNKGV  143 (959)
T ss_dssp             CSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTT-C----TTHHHHHHTTCCSS--CTTHHHHH
T ss_pred             cccccCCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCccc-c----HHHHHHHHHHhCCC--CHHHHHHH
Confidence            1   011112222333344444444 44567888888888887421 110 0    24567778877665  36678889


Q ss_pred             HHHHHHhhcCC------hhHHHHH--HhcccHHHHHHhc-------CCCC--HH-------HHHHHHHHHHHhhcccccc
Q 008827          228 LLALADMCSKL------ECCRSRC--LSLQVLKLVVDAL-------AHDS--SD-------VRSAACMCLRSVSRSIKNL  283 (552)
Q Consensus       228 ~~aL~~l~~~~------~~~~~~~--~~~~~l~~lv~~L-------~~~~--~~-------v~~~a~~~L~~ls~~~~~~  283 (552)
                      +.++..++..-      ...+..+  .-....+.+..++       ....  ..       ......+.+..+...  ..
T Consensus       144 L~~l~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  221 (959)
T d1wa5c_         144 LTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQ--DI  221 (959)
T ss_dssp             HHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSS--CC
T ss_pred             HHHHHHHHHHHHhhhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhh--cc
Confidence            99999887521      1111111  1122333333333       2211  11       111222222222221  11


Q ss_pred             cchhhhc--cCcHHHHHHhhcCCC---------------HHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhc--
Q 008827          284 SAGSFMN--ETIVIPLVRLLDDTS---------------TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK--  344 (552)
Q Consensus       284 ~~~~~~~--~~~i~~Lv~lL~~~~---------------~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~--  344 (552)
                      ... +.+  ..+++.+..++....               ..++...+..+..+...++.....+.. ..++.+.+++.  
T Consensus       222 ~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~  299 (959)
T d1wa5c_         222 PEF-FEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSI  299 (959)
T ss_dssp             CHH-HHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred             hHH-HHHHHHHHHHHHHHHHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHH
Confidence            110 111  122233333443211               245566666666665554433322221 23333333332  


Q ss_pred             ---CCCHHHHHHHHHHHHHhcccCChHhHH-----HHHHhhcHHHHHhhhcC---------CCh--------------hH
Q 008827          345 ---SMDSTIRLNALRALRNLIFLAEDKCKE-----EIFMELTASLLASLICD---------PEP--------------SV  393 (552)
Q Consensus       345 ---~~~~~v~~~a~~aL~~l~~~~~~~~~~-----~i~~~~~~~~l~~ll~~---------~~~--------------~v  393 (552)
                         .....+...++..+..++...  ....     ..+.......+...+.-         .++              ..
T Consensus       300 ~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~  377 (959)
T d1wa5c_         300 SNQPKYDILVSKSLSFLTAVTRIP--KYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTR  377 (959)
T ss_dssp             CSCTTSHHHHHHHHHHHHHHHTSH--HHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CH
T ss_pred             hcccccHHHHHHHHHHHHHHHhhH--HHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhhcccccH
Confidence               234667777777777765421  1110     11111112222222211         111              23


Q ss_pred             HHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-cCchhHHHHHHHHHHhhcCCChh---------hHHHHHHH
Q 008827          394 QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-ASKAEIEIQGMYVLGNVATGKES---------HKEAVMDQ  463 (552)
Q Consensus       394 ~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~-~~~~~v~~~a~~~L~~la~~~~~---------~~~~i~~~  463 (552)
                      +..+..++..++...++.....+..-  +.+.+...... +.++..++.++.+++.++.....         ....+.  
T Consensus       378 r~~a~~ll~~l~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~--  453 (959)
T d1wa5c_         378 RRACTDFLKELKEKNEVLVTNIFLAH--MKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV--  453 (959)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH--HHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH--
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHH--HHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHH--
Confidence            44455566666544332211111110  11122222221 24566778888888776642110         000011  


Q ss_pred             hhHhhhhhhHHHHHHhhcC---CChhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCcHHHHHhhhcCCCccHHHHHHHH
Q 008827          464 LLLRAENKAQSCIIKFLQS---NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTA  540 (552)
Q Consensus       464 ~~~~~~~~~v~~Lv~lL~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~a  540 (552)
                            .-+.+.+...+.+   ....+|..++|+++.++.   ....+...     .+++.+.+.++++++.|+..|.+|
T Consensus       454 ------~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~---~~~~~~~~-----~~~~~l~~~L~~~~~~V~~~a~~a  519 (959)
T d1wa5c_         454 ------DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRN---QLTKAQLI-----ELMPILATFLQTDEYVVYTYAAIT  519 (959)
T ss_dssp             ------HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGG---GSCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHh---hccHHHHH-----HHHHHHHHHhCCCchhHHHHHHHH
Confidence                  1122333334433   456799999999999984   12233322     357888899998888999999999


Q ss_pred             HHHHhhh
Q 008827          541 LEQFNSF  547 (552)
Q Consensus       541 l~~~~~~  547 (552)
                      +.++.+.
T Consensus       520 l~~~~~~  526 (959)
T d1wa5c_         520 IEKILTI  526 (959)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHHh
Confidence            9998764

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.49  E-value=0.017  Score=53.42  Aligned_cols=170  Identities=15%  Similarity=0.184  Sum_probs=99.1

Q ss_pred             CcHHHHHHhhcCCC--HHHHHHHHHHHHHhhcCCchhHHHHHhhCcHHHHHHhhcC----CCHHHHHHHHHHHHHhccc-
Q 008827          292 TIVIPLVRLLDDTS--TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS----MDSTIRLNALRALRNLIFL-  364 (552)
Q Consensus       292 ~~i~~Lv~lL~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~aL~~l~~~-  364 (552)
                      ..+..+.+++.+..  .........++....   .+..      ..+..+.+++++    .++.++..+.-+++++... 
T Consensus        88 ~a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~---~Pt~------~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~  158 (336)
T d1lsha1          88 EALLFLKRTLASEQLTSAEATQIVASTLSNQ---QATR------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRY  158 (336)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTC---CCCH------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHhccC---CCCH------HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHH
Confidence            44556777776443  222223333333222   2222      345566677765    4678888888888877542 


Q ss_pred             --CChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccc------Cch
Q 008827          365 --AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA------SKA  436 (552)
Q Consensus       365 --~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~l~~~L~~~------~~~  436 (552)
                        ..+.+...++ ....+.+.+.....+.+-+.-++.+|+|+.  .+.           .++.+...+.+.      ...
T Consensus       159 c~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g--~p~-----------~i~~l~~~l~~~~~~~~~~~~  224 (336)
T d1lsha1         159 CANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAG--QPN-----------SIKKIQRFLPGQGKSLDEYST  224 (336)
T ss_dssp             HTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CGG-----------GHHHHHTTSTTSSSCCCCSCH
T ss_pred             hcCCCCCcHHHH-HHHHHHHHHhhcccchHHHHHHHHHHhccC--CHh-----------HHHHHHHHhcccccccccccH
Confidence              2222222222 112334445556677777778899999985  333           456666666431      245


Q ss_pred             hHHHHHHHHHHhhcCCChhhHHHHHHHhhHhhhhhhHHHHHHhhc--CCChhHHHHHHHHHHhhc
Q 008827          437 EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ--SNDSRLRTAAVWAVLNLT  499 (552)
Q Consensus       437 ~v~~~a~~~L~~la~~~~~~~~~i~~~~~~~~~~~~v~~Lv~lL~--~~~~~~~~~a~~~l~~l~  499 (552)
                      .++..|++++.+++...+.....               .+..+..  ..++++|..|...+...-
T Consensus       225 ~vR~aAi~Alr~~~~~~p~~v~~---------------~l~~i~~n~~e~~EvRiaA~~~lm~t~  274 (336)
T d1lsha1         225 RVQAEAIMALRNIAKRDPRKVQE---------------IVLPIFLNVAIKSELRIRSCIVFFESK  274 (336)
T ss_dssp             HHHHHHHHTTTTGGGTCHHHHHH---------------HHHHHHHCTTSCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhhhcCcHHHHH---------------HHHHHHcCCCCChHHHHHHHHHHHhcC
Confidence            79999999999998865532222               2333333  457889999998886643

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.28  Score=43.44  Aligned_cols=210  Identities=12%  Similarity=0.130  Sum_probs=144.2

Q ss_pred             HHHHhCcHHHHHHhhhcCCCChhhHHHHHHHHHHhhcCChhHH----HHHHh-cccHHHHHHhcCCCCHHHHHHHHHHHH
Q 008827          200 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR----SRCLS-LQVLKLVVDALAHDSSDVRSAACMCLR  274 (552)
Q Consensus       200 ~~~~~~~i~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~----~~~~~-~~~l~~lv~~L~~~~~~v~~~a~~~L~  274 (552)
                      .++..+.+..|+..|..-  +.+.|..+...+.++-+.....+    +.+.. ..++..++..-.+  +++-..+-..|+
T Consensus        64 e~~~~d~l~~Li~~L~~L--~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~--~eiAl~~G~mLR  139 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLI--DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES--PEIALNCGIMLR  139 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGS--CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS--TTTHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCC--CCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCC--cchhhhhhHHHH
Confidence            356678888888878775  36678888888888766433222    22332 2355555555543  444444555677


Q ss_pred             HhhcccccccchhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHHHHhhC---cHHHHHHhhcCCCHHHH
Q 008827          275 SVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG---GVKLLVQLSKSMDSTIR  351 (552)
Q Consensus       275 ~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~g---~i~~L~~ll~~~~~~v~  351 (552)
                      ...+. +.++.. +.....+..++++.+.++=++...|..++..+..........++..+   ....+-.++.+++--+|
T Consensus       140 Ecik~-e~lak~-iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtr  217 (330)
T d1upka_         140 ECIRH-EPLAKI-ILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  217 (330)
T ss_dssp             HHHTS-HHHHHH-HHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHhh-HHHHHH-HHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHH
Confidence            77776 555555 66677788899999999999999999999988776655444555543   45666789999999999


Q ss_pred             HHHHHHHHHhcccCChHhHH----HHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC--cchHHHHHh
Q 008827          352 LNALRALRNLIFLAEDKCKE----EIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR--INSVEYIFA  417 (552)
Q Consensus       352 ~~a~~aL~~l~~~~~~~~~~----~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~i~~  417 (552)
                      ..++..|+.+....  .+..    .+-+..-+..+..+|++.+..+|-.|..++--+..+.  |..+..++.
T Consensus       218 RqSlKLLgelLldr--~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~  287 (330)
T d1upka_         218 RQSLKLLGELLLDR--HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILL  287 (330)
T ss_dssp             HHHHHHHHHHHHSG--GGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhh--hHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHH
Confidence            99999999987532  2222    2223445788899999999999999998887776553  334444433

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.86  Score=40.26  Aligned_cols=203  Identities=13%  Similarity=0.112  Sum_probs=141.3

Q ss_pred             HHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccc---hhhhc-cCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008827          244 RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA---GSFMN-ETIVIPLVRLLDDTSTAVQVAALGAISNI  319 (552)
Q Consensus       244 ~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~---~~~~~-~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl  319 (552)
                      .+...+.+..++..|..-+.+.|+.++.+..++-+.....+.   .++.. ..++..|+...  +++++-..+-..|...
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREc  141 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHH
Confidence            345567899999999999999999999999999765322221   11222 22333344333  3455656666666666


Q ss_pred             hcCCchhHHHHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhh---cHHHHHhhhcCCChhHHHH
Q 008827          320 VVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL---TASLLASLICDPEPSVQEQ  396 (552)
Q Consensus       320 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~---~~~~l~~ll~~~~~~v~~~  396 (552)
                      .. ++.....++....+..+.++.+.++.++...|..++..+... .+....+.+...   ......++|.+++.-.+.+
T Consensus       142 ik-~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRq  219 (330)
T d1upka_         142 IR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  219 (330)
T ss_dssp             HT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             Hh-hHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHh-CHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHH
Confidence            64 556666888888999999999999999999999999887652 234444444432   4566678999999999999


Q ss_pred             HHHHHHHhhcCCcc---hHHHHHhhcCchHHHHHHHhcccCchhHHHHHHHHHHhhcCCC
Q 008827          397 ALALVRNLVDGRIN---SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK  453 (552)
Q Consensus       397 a~~~L~~l~~~~~~---~~~~i~~~~~~~~~~l~~~L~~~~~~~v~~~a~~~L~~la~~~  453 (552)
                      ++.+|+.+......   ...++-+..  -+.+++.+|++ .+..|+-.|.+++--+.+.+
T Consensus       220 SlKLLgelLldr~N~~vm~~Yvs~~~--nLkl~M~LLrd-~sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         220 SLKLLGELLLDRHNFTIMTKYISKPE--NLKLMMNLLRD-KSRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTTCHH--HHHHHHHHTTC-SCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhCCHH--HHHHHHHHhcC-chhhHHHHhhhHhhhhhcCC
Confidence            99999999854321   111221111  46777788887 78899999999888777633

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.01  E-value=4.1  Score=36.70  Aligned_cols=132  Identities=18%  Similarity=0.215  Sum_probs=86.0

Q ss_pred             hhhHHHHHHHHHHhhcCChhHHHHHHhcccHHHHHHhcCCCCHHHHHHHHHHHHHhhcccc--cccch---------hhh
Q 008827          221 PRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK--NLSAG---------SFM  289 (552)
Q Consensus       221 ~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~--~~~~~---------~~~  289 (552)
                      ......++++|..+..........+...+++..+...+.++.+.+|..+...|..++.-.+  .....         ...
T Consensus        70 ~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~  149 (343)
T d2bnxa1          70 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD  149 (343)
T ss_dssp             HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhc
Confidence            3456778999999986544444445566799999999999999999999999988874311  10100         123


Q ss_pred             ccCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchh------HHHHHhhCcHHHHHHhhcCCCHHHHH
Q 008827          290 NETIVIPLVRLLDD-TSTAVQVAALGAISNIVVDFTTR------RSTFIRLGGVKLLVQLSKSMDSTIRL  352 (552)
Q Consensus       290 ~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~------~~~~~~~g~i~~L~~ll~~~~~~v~~  352 (552)
                      +.+-..+++..+++ .+.+.+..+...+-.+..+.++.      +..+...|..+.+-.+-...++.+..
T Consensus       150 e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~  219 (343)
T d2bnxa1         150 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV  219 (343)
T ss_dssp             TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred             CCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccCChHHHH
Confidence            44556778888864 46777777777666666655442      33455666666555554445555443

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.43  E-value=7.1  Score=35.01  Aligned_cols=161  Identities=16%  Similarity=0.138  Sum_probs=97.5

Q ss_pred             hcCChhHHHHHHhcccHHHHHHhcC----C-------CCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC
Q 008827          235 CSKLECCRSRCLSLQVLKLVVDALA----H-------DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD  303 (552)
Q Consensus       235 ~~~~~~~~~~~~~~~~l~~lv~~L~----~-------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~  303 (552)
                      ...+..+.+.+ ..+|+..|+.+|.    .       .+......+..||..+..+....... +...+++..++..|.+
T Consensus        32 rt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~v-l~~~~~i~~l~~~L~s  109 (343)
T d2bnxa1          32 NNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM-LETEEGILLLVRAMDP  109 (343)
T ss_dssp             HHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHH-HHSSSHHHHHHHTCCT
T ss_pred             hcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHH-HcChHHHHHHHHccCC
Confidence            33445566666 4566777777663    1       12457788889999887763333323 5567889999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCCc--hhHHH----------HHhhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhcccCCh-Hh
Q 008827          304 TSTAVQVAALGAISNIVVDFT--TRRST----------FIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAED-KC  369 (552)
Q Consensus       304 ~~~~v~~~a~~aL~nl~~~~~--~~~~~----------~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~-~~  369 (552)
                      +.+.++..|...|..++....  ..-..          .-+.+-...++..++++ +.+.+..++..+..+..+.+. +.
T Consensus       110 ~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~  189 (343)
T d2bnxa1         110 AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF  189 (343)
T ss_dssp             TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred             CchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHH
Confidence            999999999999988874321  11111          12234556677666654 567777777666666553221 22


Q ss_pred             ----HHHHHHhhcHHHHHhhhcCCChhHHHHH
Q 008827          370 ----KEEIFMELTASLLASLICDPEPSVQEQA  397 (552)
Q Consensus       370 ----~~~i~~~~~~~~l~~ll~~~~~~v~~~a  397 (552)
                          |.++...|..+.+-.+=...++.+..+.
T Consensus       190 R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Qi  221 (343)
T d2bnxa1         190 RVHIRSELMRLGLHQVLQELREIENEDMKVQL  221 (343)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHCChHHHHHHHHccCChHHHHHH
Confidence                3444555555444444334555555443

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=83.08  E-value=9  Score=31.54  Aligned_cols=141  Identities=9%  Similarity=-0.071  Sum_probs=90.0

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccchhhhccCcHHHHHHhhcC-CCHHHHHHHHHHHHH-hhcCCchhHH
Q 008827          251 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-TSTAVQVAALGAISN-IVVDFTTRRS  328 (552)
Q Consensus       251 l~~lv~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~n-l~~~~~~~~~  328 (552)
                      ...+-.+.+++..+.+..|+..+......         .+...++.+-.++.+ ++.++....+..+.. +....     
T Consensus        52 ~~l~~~L~~~~~~E~r~~a~~ll~~~~~~---------~~~~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~~-----  117 (213)
T d2b6ca1          52 CQEIEAYYQKTEREYQYVAIDLALQNVQR---------FSLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL-----  117 (213)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHHTGGG---------CCHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG-----
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHHHhc---------cCHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhh-----
Confidence            34445666778889999999887665432         112234445555553 567777766555532 32221     


Q ss_pred             HHHhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcCCChhHHHHHHHHHHHhhcCC
Q 008827          329 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  408 (552)
Q Consensus       329 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  408 (552)
                          ....+.+.....+++.-+|..++.+........+.        ......+..++.+++.-||....|+|+.++..+
T Consensus       118 ----~~~~~~l~~w~~s~~~w~rR~aiv~~l~~~~~~~~--------~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~~  185 (213)
T d2b6ca1         118 ----TELPTIFALFYGAENFWNRRVALNLQLMLKEKTNQ--------DLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTN  185 (213)
T ss_dssp             ----GGHHHHHHHHTTCSSHHHHHHHHHTTTTCGGGCCH--------HHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred             ----hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcccH--------HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHC
Confidence                13345677888999999999887655443332221        123455667778888899999999999999998


Q ss_pred             cchHHHHHh
Q 008827          409 INSVEYIFA  417 (552)
Q Consensus       409 ~~~~~~i~~  417 (552)
                      |+.+...++
T Consensus       186 p~~v~~fl~  194 (213)
T d2b6ca1         186 PQWVEELMK  194 (213)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            875544443

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.64  E-value=3.3  Score=31.97  Aligned_cols=76  Identities=16%  Similarity=0.113  Sum_probs=62.5

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHhcccCChHhHHHHHHhhcHHHHHhhhcC------CChhHHHHHHHHHHHhhcC
Q 008827          334 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD------PEPSVQEQALALVRNLVDG  407 (552)
Q Consensus       334 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ll~~------~~~~v~~~a~~~L~~l~~~  407 (552)
                      .++..+.+-+.+.++.++..|+..|-.+..+.++..+.++.....++.+.+++..      .+..|+..++.++..-...
T Consensus        45 ~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~  124 (145)
T d1ujka_          45 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG  124 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence            3566777778889999999999999999888778888888888899999998853      5678999999888776654


Q ss_pred             Cc
Q 008827          408 RI  409 (552)
Q Consensus       408 ~~  409 (552)
                      .+
T Consensus       125 fp  126 (145)
T d1ujka_         125 LP  126 (145)
T ss_dssp             CT
T ss_pred             CC
Confidence            33