Citrus Sinensis ID: 008834

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-

MGIFLSLFIYLISYLPVILARDVTRVTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPWGNSSVINLLHAIWYFQDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVLSVATDGSSSLRSYAHCSKEREGITLLLINLSNQTDYVISVHNSMNMKLTVKGKDINGESSLSRDIKRAVSWVGSTASDGHLTREEYHLTPKDGYLQSQTMVLNGIPLQLAEDEGIPKLDPVRVDVNSPIYITHLSIAFIVFPNFSARACVV

cHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccEEEEEcccccccccccccccccccHHHHHcccccccccccHHHHHHHHHccccEEEEccccccEEEEEcccccccccccccccccccccccEEEEcccHHHHHHHHHHcccEEEEEEccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEcccccccHHHHHHHHHHHccccEEEEEEEEccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccEEEccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEEEcccccccccccccccccHHHHHHHHHHHccccEEEEEccccccEEEEEEEEcccccEEEEEEEcccccEEEEEEEcccccEEEEcccccccccccccccccEEEEcccccccccccEEEEEEccccccccccEEEEccccccccccccccccccEEccccccEEEcccEEEEEEEcccccccccc

ccHHHEEEEEHHHHHHHHccccccEEEEEEcccEEEEEEcccEEEEEEccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHccccEEEEccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEHHHccccccccccccccccHHHHHHHHHHHHHccccEcEEEEccccccccccccEEcHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccEEEEEEEEEEcccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccccccccccccccHHHHHHHHHHHccccEEEEEccccccEEEEEEEccccccEEEEEEEEccccEEEEEEcccccccEEEEEcccccccccEcccEEEEEEcccccccccccHEEEEEccccccccccEEEEccEEEEEcccccccccccEEccccccEEEcccEEEEEEEccccccEEEc

MGIFLSLFIYLISYLPVILARDVTRVTIFVDAtktvatndehficatvdwwphdkcnynhcpwgnssVINLLHAIWYFQDLSHPLLANAIQAFQSLRIriggslqdqvlydvgdlkapchpfrkmkdglfgfskgcLHMQRWDELNQLFNRTRAIVSFGLnalhgrhnirhnawggawdsnnaRDFLKYTISMGyqidsweygnelsgrtsigasvdaelygkdLINLKNIINELyknssskptilapggffdqEWYAKFLQvsgsnvvngvthhiynlgpgvdpnlvskilnpqrlsRVSETFGNLKQTIEKhgpwasawvgesggaynsggrhvsntFVNSFWYLDqlgmsskyntkVYCRqtlvggnygllnattfipnpdyYSALLWHRLMGKGVLsvatdgssslrsyaHCSKEREGITLLLINLSNQTDYVISVHNSMnmkltvkgkdingesslsRDIKRAVSWvgstasdghltreeyhltpkdgylqsQTMVLNgiplqlaedegipkldpvrvdvnspiyitHLSIAFivfpnfsaracvv

MGIFLSLFIYLISYLPVILARDVTRVTIFVDAtktvatndEHFICATVDWWPHDKCNYNHCPWGNSSVINLLHAIWYFQDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRhnawggawdsnNARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVLSVATDGSSSLRSYAHCSKEREGITLLLINLSNQTDYVISVHNSMNMKLTVKGKDINGESSLSRDIKRAVswvgstasdghltrEEYHLTPKDGYLQSQTMVLNGIPLQLAEDEGIPKLDPVRVDVNSPIYITHLSIAFIVFPNFSARACVV

**IFLSLFIYLISYLPVILARDVTRVTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPWGNSSVINLLHAIWYFQDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVLSVATDGSSSLRSYAHCSKEREGITLLLINLSNQTDYVISVHNSMNMKLTVK*************IKRAVSWVGSTASDGHLTREEYHLTPKDGYLQSQTMVLNGIPLQLAEDEGIPKLDPVRVDVNSPIYITHLSIAFIVFPNFSARAC**

*GIFLSLFIYLISYLPVILARDVTRVTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPWGNSSVINLLHAIWYFQDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVLSVATDGSSSLRSYAHCSKEREGITLLLINLSNQTDYVISVHNSMNMKLTVKG******************************REEYHLTPKDGYLQSQTMVLNGIPLQLAEDEGIPKLDPVRVDVNSPIYITHLSIAFIVFPNFSARACVV

*GIFLSLFIYLISYLPVILARDVTRVTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPWGNSSVINLLHAIWYFQDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVLSVATDGSSSLRSYAHCSKEREGITLLLINLSNQTDYVISVHNSMNMKLTVKGKDINGESSLSRDIKRAVSWVGSTASDGHLTREEYHLTPKDGYLQSQTMVLNGIPLQLAEDEGIPKLDPVRVDVNSPIYITHLSIAFIVFPNFSARACVV

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooo

SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		551	2.2.26 [Sep-21-2011]
Q9FF10		543	Heparanase-like protein 1	yes	no	0.974	0.988	0.619	0.0
Q8L608		539	Heparanase-like protein 2	no	no	0.965	0.987	0.612	0.0
Q9FZP1		536	Heparanase-like protein 3	no	no	0.952	0.979	0.473	1e-142
Q9LRC8		527	Baicalin-beta-D-glucuroni	N/A	no	0.887	0.927	0.376	2e-98
Q90YK5		523	Heparanase OS=Gallus gall	yes	no	0.624	0.657	0.301	1e-33
Q9Y251		543	Heparanase OS=Homo sapien	yes	no	0.624	0.633	0.289	1e-29
Q9MYY0		545	Heparanase OS=Bos taurus	yes	no	0.618	0.625	0.290	4e-29
Q71RP1		536	Heparanase OS=Rattus norv	yes	no	0.651	0.669	0.289	2e-27
Q6YGZ1		535	Heparanase OS=Mus musculu	yes	no	0.624	0.642	0.287	6e-25
Q8WWQ2		592	Inactive heparanase-2 OS=	no	no	0.575	0.535	0.267	1e-21

>sp\|Q9FF10\|HPSE1_ARATH Heparanase-like protein 1 OS=Arabidopsis thaliana GN=At5g07830 PE=2 SV=1	Back alignment and function desciption

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/554 (61%), Positives = 427/554 (77%), Gaps = 17/554 (3%)

Query: 1   MGIFLSLFIYLISYLPVI----LARDVTRVTIFVDATKTVATNDEHFICATVDWWPHDKC 56
           MG  + + +  +  L ++    +A+++ R +I +   + V   DE+F+CAT+DWWPHDKC
Sbjct: 1   MGFRVCVIVVFLGCLLLVPEKTMAQEMKRASIVIQGARRVCETDENFVCATLDWWPHDKC 60

Query: 57  NYNHCPWGNSSVINLLHAIWYFQDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLK 116
           NY+ CPWG SSVIN+        DL+ PLL  AI+AF+ LRIRIGGSLQDQV+YDVG+LK
Sbjct: 61  NYDQCPWGYSSVINM--------DLTRPLLTKAIKAFKPLRIRIGGSLQDQVIYDVGNLK 112

Query: 117 APCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGG 176
            PC PF+KM  GLFGFSKGCLHM+RWDELN     T A+V+FGLNAL GRH +R  AWGG
Sbjct: 113 TPCRPFQKMNSGLFGFSKGCLHMKRWDELNSFLTATGAVVTFGLNALRGRHKLRGKAWGG 172

Query: 177 AWDSNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELY 236
           AWD  N +DFL YT+S GY IDSWE+GNELSG + +GASV AELYGKDLI LK++IN++Y
Sbjct: 173 AWDHINTQDFLNYTVSKGYVIDSWEFGNELSG-SGVGASVSAELYGKDLIVLKDVINKVY 231

Query: 237 KNS-SSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQ 295
           KNS   KP ++APGGF++Q+WY K L++SG +VV+ VTHHIYNLG G DP LV KI++P 
Sbjct: 232 KNSWLHKPILVAPGGFYEQQWYTKLLEISGPSVVDVVTHHIYNLGSGNDPALVKKIMDPS 291

Query: 296 RLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSSK 355
            LS+VS+TF ++ QTI++HGPWAS WVGESGGAYNSGGRHVS+TF++SFWYLDQLGMS++
Sbjct: 292 YLSQVSKTFKDVNQTIQEHGPWASPWVGESGGAYNSGGRHVSDTFIDSFWYLDQLGMSAR 351

Query: 356 YNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVLSVATDGSSSLRSYAH 415
           +NTKVYCRQTLVGG YGLL   TF+PNPDYYSALLWHRLMGKGVL+V TDG   LR YAH
Sbjct: 352 HNTKVYCRQTLVGGFYGLLEKGTFVPNPDYYSALLWHRLMGKGVLAVQTDGPPQLRVYAH 411

Query: 416 CSKEREGITLLLINLSNQTDYVISVHNSMNMKLTVKGKDINGESSLSRDIKRAVSWVGST 475
           CSK R G+TLLLINLSNQ+D+ +SV N +N+ L  + +    + SL   +KR  SW+GS 
Sbjct: 412 CSKGRAGVTLLLINLSNQSDFTVSVSNGINVVLNAESRK---KKSLLDTLKRPFSWIGSK 468

Query: 476 ASDGHLTREEYHLTPKDGYLQSQTMVLNGIPLQLAEDEGIPKLDPVRVDVNSPIYITHLS 535
           ASDG+L REEYHLTP++G L+S+TMVLNG  L+      IP L+PV   VNSP+ +  LS
Sbjct: 469 ASDGYLNREEYHLTPENGVLRSKTMVLNGKSLKPTATGDIPSLEPVLRSVNSPLNVLPLS 528

Query: 536 IAFIVFPNFSARAC 549
           ++FIV PNF A AC
Sbjct: 529 MSFIVLPNFDASAC 542

Endoglycosidase which is a cell surface and extracellular matrix-degrading enzyme. Cleaves heparan sulfate proteoglycans (HSPGs) into heparan sulfate side chains and core proteoglycans.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: -EC: .EC: -

>sp\|Q8L608\|HPSE2_ARATH Heparanase-like protein 2 OS=Arabidopsis thaliana GN=At5g61250 PE=2 SV=1	Back alignment and function description

>sp\|Q9FZP1\|HPSE3_ARATH Heparanase-like protein 3 OS=Arabidopsis thaliana GN=At5g34940 PE=2 SV=2	Back alignment and function description

>sp\|Q9LRC8\|BAGLU_SCUBA Baicalin-beta-D-glucuronidase OS=Scutellaria baicalensis GN=SGUS PE=1 SV=1	Back alignment and function description

>sp\|Q90YK5\|HPSE_CHICK Heparanase OS=Gallus gallus GN=HPSE PE=1 SV=1	Back alignment and function description

>sp\|Q9Y251\|HPSE_HUMAN Heparanase OS=Homo sapiens GN=HPSE PE=1 SV=2	Back alignment and function description

>sp\|Q9MYY0\|HPSE_BOVIN Heparanase OS=Bos taurus GN=HPSE PE=2 SV=2	Back alignment and function description

>sp\|Q71RP1\|HPSE_RAT Heparanase OS=Rattus norvegicus GN=Hpse PE=2 SV=1	Back alignment and function description

>sp\|Q6YGZ1\|HPSE_MOUSE Heparanase OS=Mus musculus GN=Hpse PE=1 SV=3	Back alignment and function description

>sp\|Q8WWQ2\|HPSE2_HUMAN Inactive heparanase-2 OS=Homo sapiens GN=HPSE2 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		551
255547277		539	Heparanase-2, putative [Ricinus communis	0.952	0.974	0.736	0.0
225457293		539	PREDICTED: heparanase-like protein 1-lik	0.954	0.975	0.699	0.0
449486980		536	PREDICTED: heparanase-like protein 1-lik	0.963	0.990	0.691	0.0
449439297		536	PREDICTED: heparanase-like protein 1-lik	0.945	0.972	0.700	0.0
449477170		540	PREDICTED: LOW QUALITY PROTEIN: heparana	0.978	0.998	0.672	0.0
449440822		540	PREDICTED: heparanase-like protein 1-lik	0.978	0.998	0.670	0.0
224133012		541	predicted protein [Populus trichocarpa]	0.961	0.979	0.679	0.0
297733910		513	unnamed protein product [Vitis vinifera]	0.907	0.974	0.679	0.0
356507092		1201	PREDICTED: uncharacterized protein LOC10	0.949	0.435	0.647	0.0
356562599		547	PREDICTED: heparanase-like protein 1-lik	0.978	0.985	0.632	0.0

>gi\|255547277\|ref\|XP_002514696.1\| Heparanase-2, putative [Ricinus communis] gi\|223546300\|gb\|EEF47802.1\| Heparanase-2, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/535 (73%), Positives = 458/535 (85%), Gaps = 10/535 (1%)

Query: 16  PVILARDVTRVTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPWGNSSVINLLHAI 75
           PVI A+DV   TI VD T TVA  D++FICAT+DWWPHDKC+YN CPWG SSV+NL    
Sbjct: 15  PVIFAQDVKHATIVVDGTVTVAETDDNFICATLDWWPHDKCDYNQCPWGYSSVLNL---- 70

Query: 76  WYFQDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKG 135
               +LSHPLLA A+QAF+ LRIRIGGSLQD+VLYDVGDLK PCHPFRKMKDGLFGFSKG
Sbjct: 71  ----NLSHPLLAKAMQAFRHLRIRIGGSLQDRVLYDVGDLKFPCHPFRKMKDGLFGFSKG 126

Query: 136 CLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGY 195
           CLHM RWDELN LF++T AIV+F LNALHGRH IR   WGGAWDS+NA DF+ YT+S G+
Sbjct: 127 CLHMNRWDELNLLFSKTGAIVTFSLNALHGRHQIRRGVWGGAWDSSNAYDFMNYTVSKGH 186

Query: 196 QIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQE 255
           +IDSWE+GNELSG + +GASV+AELYGKD+INLKNIINELYKNS  KP+++APGGFF+Q+
Sbjct: 187 KIDSWEFGNELSG-SGVGASVNAELYGKDVINLKNIINELYKNSGFKPSLIAPGGFFNQQ 245

Query: 256 WYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHG 315
           WYA+FL+VSGS ++N +THHIYNLG G+DPNLVSKIL+P  LS+++ETF  L QTI++HG
Sbjct: 246 WYAEFLKVSGSGIINILTHHIYNLGAGIDPNLVSKILDPHYLSKITETFSGLAQTIQQHG 305

Query: 316 PWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLN 375
           PW+SAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLG++SKYNTK YCRQTL+GGNYGLLN
Sbjct: 306 PWSSAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGLASKYNTKAYCRQTLIGGNYGLLN 365

Query: 376 ATTFIPNPDYYSALLWHRLMGKGVLSVATDGSSSLRSYAHCSKEREGITLLLINLSNQTD 435
            TT +PNPDYYSALLWHRLMGKGVL+V +D S  LR+YAHCS+ R G+TLLLINLSNQTD
Sbjct: 366 TTTLVPNPDYYSALLWHRLMGKGVLAVGSDASPYLRAYAHCSRGRAGVTLLLINLSNQTD 425

Query: 436 YVISVHNSMNMKLTVKGKDINGESSLSRDIKRAVSWVGSTASDGHLTREEYHLTPKDGYL 495
           ++ISV NSM MKL VK ++I  ES + R +KR+VSWVG+ ASD  LTREEYHLT KDGYL
Sbjct: 426 FIISVQNSMAMKLHVK-ENIQRESRIVRGLKRSVSWVGNRASDESLTREEYHLTSKDGYL 484

Query: 496 QSQTMVLNGIPLQLAEDEGIPKLDPVRVDVNSPIYITHLSIAFIVFPNFSARACV 550
           +SQTMVLNGIPL+L ED  IP+LDPV  +V SPIYI+ LSIAFIVFPNF A +C 
Sbjct: 485 RSQTMVLNGIPLELTEDGEIPRLDPVHNNVKSPIYISPLSIAFIVFPNFDAPSCA 539

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225457293\|ref\|XP_002284470.1\| PREDICTED: heparanase-like protein 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449486980\|ref\|XP_004157460.1\| PREDICTED: heparanase-like protein 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449439297\|ref\|XP_004137422.1\| PREDICTED: heparanase-like protein 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449477170\|ref\|XP_004154950.1\| PREDICTED: LOW QUALITY PROTEIN: heparanase-like protein 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449440822\|ref\|XP_004138183.1\| PREDICTED: heparanase-like protein 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224133012\|ref\|XP_002321464.1\| predicted protein [Populus trichocarpa] gi\|222868460\|gb\|EEF05591.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297733910\|emb\|CBI15157.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356507092\|ref\|XP_003522305.1\| PREDICTED: uncharacterized protein LOC100807012 [Glycine max]	Back alignment and taxonomy information

>gi\|356562599\|ref\|XP_003549557.1\| PREDICTED: heparanase-like protein 1-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		551
TAIR\|locus:2142768		543	GUS2 "AT5G07830" [Arabidopsis	0.974	0.988	0.619	2.5e-191
TAIR\|locus:2163243		539	GUS1 "AT5G61250" [Arabidopsis	0.974	0.996	0.609	7.1e-187
TAIR\|locus:2183542		536	GUS3 "AT5G34940" [Arabidopsis	0.945	0.972	0.478	1.4e-133
UNIPROTKB\|Q9LRC8		527	SGUS "Baicalin-beta-D-glucuron	0.769	0.804	0.394	3.7e-97
UNIPROTKB\|F1RVE1		542	HPSE "Uncharacterized protein"	0.479	0.487	0.359	2.2e-37
UNIPROTKB\|F1NYI9		523	HPSE "Heparanase" [Gallus gall	0.477	0.502	0.340	3.8e-36
ZFIN\|ZDB-GENE-041111-200		546	hpse "heparanase" [Danio rerio	0.537	0.542	0.321	1.2e-35
UNIPROTKB\|Q90YK5		523	HPSE "Heparanase" [Gallus gall	0.479	0.504	0.331	1.4e-35
UNIPROTKB\|E2RST8		545	HPSE "Uncharacterized protein"	0.479	0.484	0.349	1.4e-35
UNIPROTKB\|F1N1G1		545	HPSE "Heparanase" [Bos taurus	0.499	0.504	0.336	2e-32

TAIR\|locus:2142768 GUS2 "AT5G07830" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1854 (657.7 bits), Expect = 2.5e-191, P = 2.5e-191
 Identities = 343/554 (61%), Positives = 427/554 (77%)

Query:     1 MGIFLSLFIYLISYLPVI----LARDVTRVTIFVDATKTVATNDEHFICATVDWWPHDKC 56
             MG  + + +  +  L ++    +A+++ R +I +   + V   DE+F+CAT+DWWPHDKC
Sbjct:     1 MGFRVCVIVVFLGCLLLVPEKTMAQEMKRASIVIQGARRVCETDENFVCATLDWWPHDKC 60

Query:    57 NYNHCPWGNSSVINLLHAIWYFQDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLK 116
             NY+ CPWG SSVIN+        DL+ PLL  AI+AF+ LRIRIGGSLQDQV+YDVG+LK
Sbjct:    61 NYDQCPWGYSSVINM--------DLTRPLLTKAIKAFKPLRIRIGGSLQDQVIYDVGNLK 112

Query:   117 APCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGG 176
              PC PF+KM  GLFGFSKGCLHM+RWDELN     T A+V+FGLNAL GRH +R  AWGG
Sbjct:   113 TPCRPFQKMNSGLFGFSKGCLHMKRWDELNSFLTATGAVVTFGLNALRGRHKLRGKAWGG 172

Query:   177 AWDSNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELY 236
             AWD  N +DFL YT+S GY IDSWE+GNELSG + +GASV AELYGKDLI LK++IN++Y
Sbjct:   173 AWDHINTQDFLNYTVSKGYVIDSWEFGNELSG-SGVGASVSAELYGKDLIVLKDVINKVY 231

Query:   237 KNS-SSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQ 295
             KNS   KP ++APGGF++Q+WY K L++SG +VV+ VTHHIYNLG G DP LV KI++P 
Sbjct:   232 KNSWLHKPILVAPGGFYEQQWYTKLLEISGPSVVDVVTHHIYNLGSGNDPALVKKIMDPS 291

Query:   296 RLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSSK 355
              LS+VS+TF ++ QTI++HGPWAS WVGESGGAYNSGGRHVS+TF++SFWYLDQLGMS++
Sbjct:   292 YLSQVSKTFKDVNQTIQEHGPWASPWVGESGGAYNSGGRHVSDTFIDSFWYLDQLGMSAR 351

Query:   356 YNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVLSVATDGSSSLRSYAH 415
             +NTKVYCRQTLVGG YGLL   TF+PNPDYYSALLWHRLMGKGVL+V TDG   LR YAH
Sbjct:   352 HNTKVYCRQTLVGGFYGLLEKGTFVPNPDYYSALLWHRLMGKGVLAVQTDGPPQLRVYAH 411

Query:   416 CSKEREGITLLLINLSNQTDYVISVHNSMNMKLTVKGKDINGESSLSRDIKRAVSWVGST 475
             CSK R G+TLLLINLSNQ+D+ +SV N +N+ L  + +    + SL   +KR  SW+GS 
Sbjct:   412 CSKGRAGVTLLLINLSNQSDFTVSVSNGINVVLNAESRK---KKSLLDTLKRPFSWIGSK 468

Query:   476 ASDGHLTREEYHLTPKDGYLQSQTMVLNGIPLQLAEDEGIPKLDPVRVDVNSPIYITHLS 535
             ASDG+L REEYHLTP++G L+S+TMVLNG  L+      IP L+PV   VNSP+ +  LS
Sbjct:   469 ASDGYLNREEYHLTPENGVLRSKTMVLNGKSLKPTATGDIPSLEPVLRSVNSPLNVLPLS 528

Query:   536 IAFIVFPNFSARAC 549
             ++FIV PNF A AC
Sbjct:   529 MSFIVLPNFDASAC 542

GO:0004566 "beta-glucuronidase activity" evidence=ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

TAIR\|locus:2163243 GUS1 "AT5G61250" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2183542 GUS3 "AT5G34940" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9LRC8 SGUS "Baicalin-beta-D-glucuronidase" [Scutellaria baicalensis (taxid:65409)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RVE1 HPSE "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NYI9 HPSE "Heparanase" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-041111-200 hpse "heparanase" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q90YK5 HPSE "Heparanase" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RST8 HPSE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N1G1 HPSE "Heparanase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FF10	HPSE1_ARATH	3, ., 2, ., -, ., -	0.6191	0.9745	0.9889	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XV000236	SubName- Full=Putative uncharacterized protein; (541 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		551
pfam03662		320	pfam03662, Glyco_hydro_79n, Glycosyl hydrolase fam	0.0

>gnl\|CDD\|190706 pfam03662, Glyco_hydro_79n, Glycosyl hydrolase family 79, N-terminal domain	Back alignment and domain information

 Score =  540 bits (1392), Expect = 0.0
 Identities = 193/327 (59%), Positives = 247/327 (75%), Gaps = 9/327 (2%)

Query: 25  RVTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPWGNSSVINLLHAIWYFQDLSHP 84
             T+ VD  + +A  DE+F+CAT+DWWP +KC+Y  CPWG +S++NL        DL++P
Sbjct: 3   EATVVVDGRRAIAETDENFVCATLDWWPPEKCDYGQCPWGLASLLNL--------DLNNP 54

Query: 85  LLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDE 144
           +L NAI+AF  L+IR+GGSLQDQV+YD GDLK PC PF K   GLFGFS+GCL M RWDE
Sbjct: 55  ILLNAIKAFAPLKIRLGGSLQDQVIYDTGDLKTPCTPFTKNTSGLFGFSQGCLPMDRWDE 114

Query: 145 LNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGN 204
           LN  F +T AI++FGLNAL GR+ +    WGGAWD  NA  F++YT+S GY+IDSWE GN
Sbjct: 115 LNAFFQKTGAIITFGLNALRGRNKLPKGTWGGAWDYTNAESFIRYTVSKGYKIDSWELGN 174

Query: 205 ELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVS 264
           ELSG   +GA V AE Y KDLI LKN++ ++Y+N   KP ++APGGFFDQ+W+ + L  +
Sbjct: 175 ELSGSG-VGARVSAEQYAKDLIKLKNLVKDVYQNVRPKPLVIAPGGFFDQQWFTELLDKT 233

Query: 265 GSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGE 324
           G +V++ +THHIYNLGPGVDP+L+ KIL+P  L   ++TF +L+Q I+ HG WA AWVGE
Sbjct: 234 GPSVLDVLTHHIYNLGPGVDPHLIEKILDPSYLDGEAKTFSDLQQIIQSHGTWAVAWVGE 293

Query: 325 SGGAYNSGGRHVSNTFVNSFWYLDQLG 351
           +GGAYNSGG  VSNTF+NSFWYLDQLG
Sbjct: 294 AGGAYNSGGNLVSNTFINSFWYLDQLG 320

Family of endo-beta-N-glucuronidase, or heparanase. Heparan sulfate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulfate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular micro-environment. Heparanase degrades HS at specific intra-chain sites. The enzyme is synthesised as a latent approximately 65 kDa protein that is processed at the N-terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumour cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity. Length = 320

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		551
PF03662		319	Glyco_hydro_79n: Glycosyl hydrolase family 79, N-t	100.0
COG3534		501	AbfA Alpha-L-arabinofuranosidase [Carbohydrate tra	100.0
PF01229		486	Glyco_hydro_39: Glycosyl hydrolases family 39; Int	99.19
PF11790		239	Glyco_hydro_cc: Glycosyl hydrolase catalytic core;	98.67
smart00813		189	Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminu	98.51
PF02055		496	Glyco_hydro_30: O-Glycosyl hydrolase family 30; In	98.33
PF00150		281	Cellulase: Cellulase (glycosyl hydrolase family 5)	98.24
PF06964		177	Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-termin	98.23
PF12891		239	Glyco_hydro_44: Glycoside hydrolase family 44; Int	98.08
PF07745		332	Glyco_hydro_53: Glycosyl hydrolase family 53; Inte	98.0
COG5520		433	O-Glycosyl hydrolase [Cell envelope biogenesis, ou	97.7
PF12876		88	Cellulase-like: Sugar-binding cellulase-like; Inte	97.56
COG3867		403	Arabinogalactan endo-1,4-beta-galactosidase [Carbo	97.17
smart00633		254	Glyco_10 Glycosyl hydrolase family 10.	96.46
COG3664		428	XynB Beta-xylosidase [Carbohydrate transport and m	95.81
PF14587		384	Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; P	95.42
PRK10150		604	beta-D-glucuronidase; Provisional	95.32
PF02836		298	Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM	93.57
PF00332		310	Glyco_hydro_17: Glycosyl hydrolases family 17; Int	91.36
COG5309		305	Exo-beta-1,3-glucanase [Carbohydrate transport and	82.21
PF03198		314	Glyco_hydro_72: Glucanosyltransferase; InterPro: I	80.63

>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3	Back alignment and domain information

Probab=100.00  E-value=1.2e-82  Score=642.20  Aligned_cols=318  Identities=55%  Similarity=1.066  Sum_probs=156.1

Q ss_pred             eEEEEecCCCcccccCCCeeEEEeeccCCCCCCCCCCCCCCCccchhcccccccccCCcHHHHHHHHHcCCceEecCCcc
Q 008834           25 RVTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPWGNSSVINLLHAIWYFQDLSHPLLANAIQAFQSLRIRIGGSL  104 (551)
Q Consensus        25 ~~~v~v~~~~~~~~i~~~f~g~sie~wp~~~~~y~~~~wg~~s~~nl~~~g~~~~dl~~~~L~~l~k~L~p~~LRiGG~~  104 (551)
                      .++|.|+.+.+++++|++|+|+|+||||++||+|++|+||++|++|+        ||+|++|++++|+|+|.+||+||+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~f~catldwwp~~kc~y~~~~w~~as~~nl--------DL~n~~L~~a~~al~P~~iRvGGsl   73 (319)
T PF03662_consen    2 DGTVVVDGSTAIATTDENFVCATLDWWPPSKCDYGQCSWGNASILNL--------DLSNPILINAAKALSPLYIRVGGSL   73 (319)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc--------ccccccccccccccccccccccccc
Confidence            56889999999999999999999999999999999999999999999        9999999999999999999999999


Q ss_pred             cceeeEecCCCCCCCCCCccCCCCcccccccccchhhHHHHHHHHHhcCCEEEEEeecCCCCccccCCCCCCCCChHHHH
Q 008834          105 QDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNAR  184 (551)
Q Consensus       105 ~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~lt~~~wd~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~W~~~~A~  184 (551)
                      ||+++|+.+....||.|+.++++.+|||+++|+++++||++++||+++|+++|||||++.|++...++.+.|+||++||+
T Consensus        74 qD~v~Y~~~~~~~~c~~~~~~~~~~~~fs~~clt~~rwd~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~  153 (319)
T PF03662_consen   74 QDQVIYDTGDNKQPCSPFVKNASGLFGFSNGCLTMSRWDELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQ  153 (319)
T ss_dssp             --------------------------------------HHHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TT
T ss_pred             cccccccccccccccccccccccccccccccccchhHHHHHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHH
Confidence            99999999988889999888889999999999999999999999999999999999999997544444566899999999


Q ss_pred             HHHHHHHHcCcccceeEeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEEccCCCCCHHHHHHHHhhh
Q 008834          185 DFLKYTISMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVS  264 (551)
Q Consensus       185 ~~l~y~~~~g~~i~~wElGNEp~~~~~~g~~~ta~~Ya~d~~~~~~~~~~~~~~~~~~~~~vgp~~~~~~~w~~~fl~~~  264 (551)
                      ++|+|+.++||+|++|||||||+++ +.+.+++|+||++|+.+||++|+++|++..++|+++||+++++.+|+++||+++
T Consensus       154 ~Ll~Yt~skgy~I~~WELGNEl~g~-g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d~~w~~~FL~~~  232 (319)
T PF03662_consen  154 SLLKYTASKGYNIDSWELGNELNGS-GVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFDADWLKEFLKAS  232 (319)
T ss_dssp             TEEEEEESS-GGG--------HHHH-SSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS-GGGHHHHHHHT
T ss_pred             HHHHHHHHcCCCccccccccccCCC-CCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCCHHHHHHHHHhc
Confidence            9999999999999999999999996 788999999999999999999999998877889999999988999999999998


Q ss_pred             CCCCcCEEEEeEcCCCCCCCcchhhccCChhHHHHHHHHHHHHHHHHHHhCCCCcEEEeccccccCCCCCCcchHHHHHH
Q 008834          265 GSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSF  344 (551)
Q Consensus       265 g~~~id~vS~H~Y~~~~g~d~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Et~sa~~~G~~~vsdtf~~al  344 (551)
                      ++..||+||||+|++++|+|++++++|++|++||.+..+++.+++++++++|++++|||||++||++|+++|||||+++|
T Consensus       233 g~~~vD~vT~H~Y~lg~g~d~~l~~~~l~p~~Ld~~~~~~~~~~~~v~~~~p~~~~WlGEtg~Ay~gG~~~vSdtFv~~F  312 (319)
T PF03662_consen  233 GPGVVDAVTWHHYNLGSGRDPALIEDFLNPSYLDTLADTFQKLQQVVQEYGPGKPVWLGETGSAYNGGAPGVSDTFVAGF  312 (319)
T ss_dssp             TTT--SEEEEEEEEE--TT-TT-HHHHTS--HHHHHHHHHHHHH-----HHH---EEEEEEEEESTT--TTTTTSTHHHH
T ss_pred             CCCccCEEEEEecCCCCCchHHHHHHhcChhhhhHHHHHHHHHhhhhcccCCCCCeEEeCcccccCCCCCCccHHHHHHH
Confidence            87569999999999988888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 008834          345 WYLDQLG  351 (551)
Q Consensus       345 w~lD~Lg  351 (551)
                      ||||+||
T Consensus       313 wwLDqLG  319 (319)
T PF03662_consen  313 WWLDQLG  319 (319)
T ss_dssp             HHHHHH-
T ss_pred             HHHHhhC
Confidence            9999997

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.

>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins	Back alignment and domain information

>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus	Back alignment and domain information

>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3	Back alignment and domain information

>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases	Back alignment and domain information

>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3	Back alignment and domain information

>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3	Back alignment and domain information

>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]	Back alignment and domain information

>smart00633 Glyco_10 Glycosyl hydrolase family 10	Back alignment and domain information

>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B	Back alignment and domain information

>PRK10150 beta-D-glucuronidase; Provisional	Back alignment and domain information

>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3	Back alignment and domain information

>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		551
3vny_A		488	Crystal Structure Of Beta-Glucuronidase From Acidob		2e-04

>pdb|3VNY|A Chain A, Crystal Structure Of Beta-Glucuronidase From Acidobacterium Capsulatum Length = 488

Back alignment and structure

Iteration: 1

Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 114/283 (40%), Gaps = 34/283 (12%) Query: 176 GAWDSNNARDFLKYTISM--GYQIDSWEYGNE--LSGRTSI-GASVDAELYGKDLINLKN 230 G NA D Y + ++ +++ GNE L R I AS D Y D Sbjct: 142 GKGTPENAADEAAYVMETIGADRLLAFQLGNEPDLFYRNGIRPASYDFAAYAGDWQRFFT 201 Query: 231 IINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNL-VS 289 I + N+ P ++ +W F +V ++ H Y GP DP++ + Sbjct: 202 AIRKRVPNAP----FAGPDTAYNTKWLVPFADKFKHDV-KFISSHYYAEGPPTDPSMTIE 256 Query: 290 KILNPQ-RLSRVSETFGNLKQTIEKHG-PWASAWVGESGGAYNSGGRHVSNTFVNSFWYL 347 +++ P RL + ET G LKQ G P+ + E+ Y G + VS+TF + W Sbjct: 257 RLMKPNPRL--LGETAG-LKQVEADTGLPFR---LTETNSCYQGGKQGVSDTFAAALWAG 310 Query: 348 DQLGMSSKYNTKVYCRQTLVGGNYGLLNATT------FIPNPDYYSALLWHRLMGKGVLS 401 D + + + GG YG FI P+YY LL+ + G G L Sbjct: 311 DLMYQQAAAGS---TGINFHGGGYGWYTPVAGTPEDGFIARPEYYGMLLFAQ-AGAGQLL 366 Query: 402 VA--TDGSSS--LRSYA-HCSKEREGITLLLINLSNQTDYVIS 439 A TD S++ L +YA + R I L NL + IS Sbjct: 367 GAKLTDNSAAPLLTAYALRGTDGRTRIALFNKNLDADVEVAIS 409

PyMOL of 3vny

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		551
3vny_A		488	Beta-glucuronidase; TIM barrel, greek-KEY, glycosi	2e-63
3ug3_A		504	Alpha-L-arabinofuranosidase; TIM barrel, hydrolase	9e-13

>3vny_A Beta-glucuronidase; TIM barrel, greek-KEY, glycoside hydrolase family 79, hydrol; 1.50A {Acidobacterium capsulatum} PDB: 3vnz_A* 3vo0_A* Length = 488	Back alignment and structure

 Score =  214 bits (545), Expect = 2e-63
 Identities = 87/490 (17%), Positives = 159/490 (32%), Gaps = 69/490 (14%)

Query: 26  VTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPWGNSSVINLLHAIWYFQDLSHPL 85
           V + VDA+    T    +    + +      N N+    N+ +   L        L    
Sbjct: 22  VGLSVDASALGHTIPPDY--TGLSYEQAQMANPNYFSGANTQLAGFLRT------LGRQG 73

Query: 86  LANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMK--DGLFGFSKGCLHMQRWD 143
                       +RIGG+  +   ++                  G    ++  +  +  +
Sbjct: 74  -----------VLRIGGNTSEYTFWNRHAKPTAADEHLAAGPDKGHHAAAREVITPEAVN 122

Query: 144 ELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTIS--MGYQIDSWE 201
            L++  ++T   + +GLN              G     NA D   Y +      ++ +++
Sbjct: 123 NLSEFLDKTGWKLIYGLNL-------------GKGTPENAADEAAYVMETIGADRLLAFQ 169

Query: 202 YGNELSGRTSIG---ASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYA 258
            GNE       G   AS D   Y  D       I +   N         P   ++ +W  
Sbjct: 170 LGNEPDLFYRNGIRPASYDFAAYAGDWQRFFTAIRKRVPN----APFAGPDTAYNTKWLV 225

Query: 259 KFLQVSGSNVVNGVTHHIYNLGPGVDPNL-VSKILNPQRLSRVSETFGNLKQTIEKHGPW 317
            F      +V   ++ H Y  GP  DP++ + +++ P    R+      LKQ     G  
Sbjct: 226 PFADKFKHDV-KFISSHYYAEGPPTDPSMTIERLMKPN--PRLLGETAGLKQVEADTGLP 282

Query: 318 ASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLNAT 377
               + E+   Y  G + VS+TF  + W  D +   +   +         GG YG     
Sbjct: 283 F--RLTETNSCYQGGKQGVSDTFAAALWAGDLMYQQAAAGS---TGINFHGGGYGWYTPV 337

Query: 378 T------FIPNPDYYSALLWHRLMGKGVLSVATD---GSSSLRSYAHCSKEREGITLLLI 428
                  FI  P+YY  LL+ +     +L         +  L +YA    +     + L 
Sbjct: 338 AGTPEDGFIARPEYYGMLLFAQAGAGQLLGAKLTDNSAAPLLTAYALRGTDG-RTRIALF 396

Query: 429 NLSNQTDYVISVHNSMNMKLTVKGKDINGESSLSRDIKRAVSWVGST--ASDGHLTREEY 486
           N +   D  +++    +   TV   +         D    V++ G+   AS       + 
Sbjct: 397 NKNLDADVEVAISGVASPSGTVLRLEAPR-----ADDTTDVTFGGAPVGASGSWSPLVQE 451

Query: 487 HLTPKDGYLQ 496
           ++    G   
Sbjct: 452 YVPGHSGQFV 461

PyMOL of 3vny

>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A Length = 504	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		551
3vny_A		488	Beta-glucuronidase; TIM barrel, greek-KEY, glycosi	100.0
1qw9_A		502	Arabinosidase, alpha-L-arabinofuranosidase; hydrol	100.0
2vrq_A		496	Alpha-L-arabinofuranosidase; hydrolase, glycosidas	100.0
2c7f_A		513	Alpha-L-arabinofuranosidase; glycosidase, xylan, a	100.0
3ug3_A		504	Alpha-L-arabinofuranosidase; TIM barrel, hydrolase	100.0
2y2w_A		574	Arabinofuranosidase; hydrolase, arabinoxylan, glyc	100.0
2yih_A		524	CEL44C, xyloglucanase; hydrolase, GH44, endo-gluca	100.0
2e4t_A		519	Endoglucanase, xyloglucanase; TIM barrel, TIM-like	100.0
3ii1_A		535	Cellulase; CELM2, glucanase-xyanase, glucanase, xy	99.96
3ik2_A		517	Endoglucanase A; TIM-like barrel, hydrolase; 2.20A	99.94
1w91_A		503	Beta-xylosidase; MAD, seMet, tetramer, hydrolase;	99.91
4ekj_A		500	Beta-xylosidase; TIM-barrel fold, hemicellulase, h	99.89
1uhv_A		500	Beta-xylosidase; family 39 glycoside hydrolase, xy	99.84
2y24_A		383	Xylanase; hydrolase, GH5 family, aldotetraouronic	99.23
3clw_A		507	Conserved exported protein; structural genomics, u	99.17
2wnw_A		447	Activated by transcription factor SSRB; hydrolase,	99.04
2nt0_A		497	Glucosylceramidase; cerezyme, glucocerebrosidase,	98.96
3kl0_A		401	Glucuronoxylanase XYNC; alpha beta barrel, (beta/a	98.9
1ur4_A		399	Galactanase; hydrolase, beta-1, glycoside hydrolas	98.84
1fob_A		334	Beta-1,4-galactanase; B/A barrel, glycosyl hydrola	98.66
4aw7_A		591	GH86A beta-porphyranase; hydrolase, porphyran-hexa	98.5
1hjs_A		332	Beta-1,4-galactanase; 4-galactanases, family 53 gl	98.35
3aof_A		317	Endoglucanase; glycosyl hydrolase family 5, cellul	98.32
3nco_A		320	Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1	98.19
3pzg_A		383	Mannan endo-1,4-beta-mannosidase. glycosyl hydrol	98.18
1qnr_A		344	Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt	98.16
3jug_A		345	Beta-mannanase; TIM-barrel, glycosidase, hydrolase	98.08
3pzt_A		327	Endoglucanase; alpha/beta barrel, glycosyl hydrola	98.05
3zr5_A		656	Galactocerebrosidase; hydrolase, GALC, glycosyl hy	97.97
3qho_A		458	Endoglucanase, 458AA long hypothetical endo-1,4-be	97.89
4hty_A		359	Cellulase; (alpha/beta)8 barrel, family 5 endogluc	97.86
1uuq_A		440	Mannosyl-oligosaccharide glucosidase; hydrolase, m	97.84
1ece_A		358	Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.	97.84
1ceo_A		343	Cellulase CELC; glycosyl hydrolase, family A/5 of	97.84
1bqc_A		302	Protein (beta-mannanase); glycosyl hydrolase, fami	97.83
1rh9_A		373	Endo-beta-mannanase; endo-beta-mannase, retaining,	97.82
2whl_A		294	Beta-mannanase, baman5; glycoside hydrolase, hydro	97.8
3ndz_A		345	Endoglucanase D; cellotriose, xylanase, carbohydra	97.8
3icg_A		515	Endoglucanase D; cellulase, xylanase, carbohydrate	97.78
2jep_A		395	Xyloglucanase; family 5, plant cell WALL, hydrolas	97.77
1wky_A		464	Endo-beta-1,4-mannanase; TIM barrel, catalytic dom	97.72
1egz_A		291	Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CL	97.59
1vjz_A		341	Endoglucanase; TM1752, structural genomics, JCSG,	97.59
1tvn_A		293	Cellulase, endoglucanase G; glycoside hydrolase, C	97.58
4awe_A		387	Endo-beta-D-1,4-mannanase; hydrolase, endo-mannana	97.56
2cks_A		306	Endoglucanase E-5; carbohydrate metabolism, polysa	97.55
3hn3_A		613	Beta-G1, beta-glucuronidase; lysosomal enzyme, aci	97.55
7a3h_A		303	Endoglucanase; hydrolase, cellulose degradation, g	97.54
3civ_A		343	Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.	97.48
3ayr_A		376	Endoglucanase; TIM barrel, hydrolase, carbohydrate	97.43
1h1n_A		305	Endo type cellulase ENGI; hydrolase, glycosyl hydr	97.33
1nq6_A		302	XYS1; glycoside hydrolase family 10, xylanase, xyl	97.3
3vup_A		351	Beta-1,4-mannanase; TIM barrel, digestive fluid, H	97.18
3l55_A		353	B-1,4-endoglucanase/cellulase; putative beta-1,4-e	97.16
1edg_A		380	Endoglucanase A; family A, cellulases, xylanases,	97.13
1g01_A		364	Endoglucanase; alpha/beta barrel, TIM barrel, hydr	97.13
1h4p_A		408	Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca	97.04
2w61_A		555	GAS2P, glycolipid-anchored surface protein 2; glyc	97.03
2osx_A		481	Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel	97.03
3n9k_A		399	Glucan 1,3-beta-glucosidase; aromatic entranceway/	97.03
3qr3_A		340	Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A	96.99
2c0h_A		353	Mannan endo-1,4-beta-mannosidase; hydrolase, signa	96.9
3cui_A		315	EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine	96.83
3fn9_A		692	Putative beta-galactosidase; structural genomics,	96.76
2y8k_A		491	Arabinoxylanase, carbohydrate binding family 6; hy	96.72
3lpf_A		605	Beta-glucuronidase; alpha/beta barrel, sugar-bindi	96.52
1n82_A		331	Xylanase, intra-cellular xylanase; hydrolase; 1.45	96.49
3cmg_A		667	Putative beta-galactosidase; structural genomics,	96.35
3em5_A		316	Beta-1,3-glucanase; glycoprotein, rossmann fold, (	96.33
1xyz_A		347	1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrola	96.18
2dep_A		356	Xylanase B, thermostable celloxylanase; glycosidas	96.09
1ur1_A		378	Endoxylanase; hydrolase, family 10, glycoside hydr	95.76
3ur8_A		323	Glucan endo-1,3-beta-D-glucosidase; glucoside hydr	95.68
1i1w_A		303	Endo-1,4-beta-xylanase; xylan degradation, hydrola	95.61
1v0l_A		313	Endo-1,4-beta-xylanase A; glycoside hydrolase fami	95.57
1ta3_B		303	Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I),	95.15
3niy_A		341	Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.5	94.65
2uwf_A		356	Endoxylanase, alkaline active endoxylanase; hydrol	94.61
1kwg_A		645	Beta-galactosidase; TIM barrel, glycoside hydrolas	94.54
3gm8_A		801	Glycoside hydrolase family 2, candidate beta-GLYC;	94.36
1ghs_A		306	1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulg	94.14
1aq0_A		306	1,3-1,4-beta-glucanase; hydrolase, glycosidase, gl	94.07
2cyg_A		312	Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (be	93.89
3u7b_A		327	Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET	93.86
1r85_A		379	Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A	92.73
2v3g_A		283	Endoglucanase H; beta-1 4 beta-1 3 glucanase, lich	92.18
1w32_A		348	Endo-1,4-beta-xylanase A precursor; mutant, calciu	92.01
1yq2_A		1024	Beta-galactosidase; glycosyl hydrolase family 2, T	91.95
2d1z_A		436	Endo-1,4-beta-D-xylanase; TIM-barrel, retaining en	91.79
3tp4_A		475	Computational design of enzyme; structural genomic	88.5
2vx5_A		396	Cellvibrio japonicus mannanase cjman26C; hydrolase	88.15
3emz_A		331	Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 ba	86.48
1tg7_A		971	Beta-galactosidase; TIM barrel domain, glycoside h	85.43
1odz_A		386	Mannanase A; hydrolase, family 26, glycoside-hydro	85.37
3oba_A		1032	Beta-galactosidase; TIM barrel, tetramer, GH2, gly	85.16
3tty_A		675	Beta-GAL, beta-galactosidase; TIM barrel, glycosid	84.32
2ddx_A		333	Beta-1,3-xylanase; glycoside hydrolase, TIM barrel	83.92
4f8x_A		335	Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET	83.83
1us2_A		530	Xylanase10C, endo-beta-1,4-xylanase; hydrolase, ca	83.47
2je8_A		848	Beta-mannosidase; glycoside hydrolase, hydrolase;	82.3

>3vny_A Beta-glucuronidase; TIM barrel, greek-KEY, glycoside hydrolase family 79, hydrol; 1.50A {Acidobacterium capsulatum} PDB: 3vnz_A* 3vo0_A*	Back alignment and structure

Probab=100.00  E-value=2.9e-70  Score=593.45  Aligned_cols=447  Identities=19%  Similarity=0.212  Sum_probs=357.7

Q ss_pred             cCcceEEEEecCCCcccccCCCeeEEEeeccCCCCCCCCCCCCCCCccchhcccccccccCCcHHHHHHHHHcCC-ceEe
Q 008834           21 RDVTRVTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPWGNSSVINLLHAIWYFQDLSHPLLANAIQAFQS-LRIR   99 (551)
Q Consensus        21 ~~~~~~~v~v~~~~~~~~i~~~f~g~sie~wp~~~~~y~~~~wg~~s~~nl~~~g~~~~dl~~~~L~~l~k~L~p-~~LR   99 (551)
                      .++.+++|+|++++++++|||+|+|++||                .+.+   .| .+++++++++|++|+|+|+| ++||
T Consensus        17 ~~~~~~~v~v~~~~~~~~v~~~f~g~~~e----------------~s~i---~~-~~~~~~~~~~v~~l~k~L~~~~~lR   76 (488)
T 3vny_A           17 SSPVRVGLSVDASALGHTIPPDYTGLSYE----------------QAQM---AN-PNYFSGANTQLAGFLRTLGRQGVLR   76 (488)
T ss_dssp             -CCEEEEEEEEEEEEEEEECTTCCEEEEE----------------GGGG---GC-TTTSSTTCHHHHHHHHHHCSSCEEE
T ss_pred             CCCCcEEEEEcCCCCCCccCccceEeeee----------------Hhhc---cC-ccccCcCCHHHHHHHHHhCCCeEEE
Confidence            56789999999999999999999999999                2322   23 23457889999999999999 9999


Q ss_pred             cCCcccceeeEecCCCCCCCCCCc-cCCCCcc-cccccccchhhHHHHHHHHHhcCCEEEEEeecCCCCccccCCCCCCC
Q 008834          100 IGGSLQDQVLYDVGDLKAPCHPFR-KMKDGLF-GFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGA  177 (551)
Q Consensus       100 iGG~~~D~~~~~~~~~~~~~~p~~-~~~~~~~-g~~~~~lt~~~wd~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~  177 (551)
                      +|||++|.++|+++..+...+|.. .+....+ ..++.|+++.+||+|++||+++|+++||+||++.+            
T Consensus        77 ~GG~~~d~~~w~~g~~p~~~rp~~~~~~~~~~~~~~~~~~~~~~~def~~f~~~~G~~~~~~lN~g~~------------  144 (488)
T 3vny_A           77 IGGNTSEYTFWNRHAKPTAADEHLAAGPDKGHHAAAREVITPEAVNNLSEFLDKTGWKLIYGLNLGKG------------  144 (488)
T ss_dssp             EESGGGGSEEECTTCCGGGSCTTCCCCCCCSSSCCCCEEECHHHHHHHHHHHHHHCCEEEEEECTTTS------------
T ss_pred             eCccccceEEEcCCCCCcccCcccccCcchhhccccCceeCHHHHHHHHHHHHHhCCEEEEEEeCCCC------------
Confidence            999999999999986543333321 0001000 01257999999999999999999999999999764            


Q ss_pred             CChHHHHHHHHHHHH--cCcccceeEeeccCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEEccCCCC
Q 008834          178 WDSNNARDFLKYTIS--MGYQIDSWEYGNELSGRTS---IGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFF  252 (551)
Q Consensus       178 W~~~~A~~~l~y~~~--~g~~i~~wElGNEp~~~~~---~g~~~ta~~Ya~d~~~~~~~~~~~~~~~~~~~~~vgp~~~~  252 (551)
                       ++++|++|++||..  ++++|++||||||||++++   .+.+|++++|+++|++++++|++.+|+    ++++||+...
T Consensus       145 -~~~~a~~~v~y~~~~~~~~~l~~welGNEpd~~~~~G~~~~~~t~~~Y~~~~~~~a~a~k~~~p~----~~l~gp~~~~  219 (488)
T 3vny_A          145 -TPENAADEAAYVMETIGADRLLAFQLGNEPDLFYRNGIRPASYDFAAYAGDWQRFFTAIRKRVPN----APFAGPDTAY  219 (488)
T ss_dssp             -CHHHHHHHHHHHHHHHCTTTEEEEEESSCGGGHHHHSSSCTTCCHHHHHHHHHHHHHHHHHHCTT----CCEEEEEESS
T ss_pred             -CHHHHHHHHHHHhhcccCCceeEEEecCcccccccCCccCCCCCHHHHHHHHHHHHHHHHhhCCC----CeEEeCCCCC
Confidence             68999999999986  9999999999999998753   256899999999999999999998875    4799999776


Q ss_pred             CHHHHHHHHhhhCCCCcCEEEEeEcCCCCCCCc-chhhccCChhH-HHHHHHHHHHHHHHHHHhCCCCcEEEeccccccC
Q 008834          253 DQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDP-NLVSKILNPQR-LSRVSETFGNLKQTIEKHGPWASAWVGESGGAYN  330 (551)
Q Consensus       253 ~~~w~~~fl~~~g~~~id~vS~H~Y~~~~g~d~-~~~~~~l~~~~-l~~~~~~~~~~~~~~~~~~~~~~~wl~Et~sa~~  330 (551)
                      +..|+++||+..+. .||++|+|+|+.+++.++ .+++++|+++. ++..   ++.+++++++  +++|+||||+|+++|
T Consensus       220 ~~~w~~~~l~~~~~-~vd~vS~H~Y~~g~~~~~~~t~~~ll~~~~~l~~~---~~~~~~~~~~--~g~p~~lgEtnsa~~  293 (488)
T 3vny_A          220 NTKWLVPFADKFKH-DVKFISSHYYAEGPPTDPSMTIERLMKPNPRLLGE---TAGLKQVEAD--TGLPFRLTETNSCYQ  293 (488)
T ss_dssp             CGGGHHHHHHHTGG-GCSEEEEEEEEECCTTCTTCCHHHHTSCCHHHHHH---HHHHHHHHHH--HCCCEEEEEEEEEST
T ss_pred             CchhhHHHHHhcCc-cCCEEEEeeCCCCCCCCCCcCHHHHcCchHHHHHH---HHHHHHHHhc--CCCCEEEeccccCCC
Confidence            78999999988776 599999999998655443 35778999863 5443   3344444443  468999999999999


Q ss_pred             CCCCCcchHHHHHHHHHHHhhhhhccCCeEEEeeeccCCccccccCCC---CccCcchHHHHHHHHhcCCceEEeecC-C
Q 008834          331 SGGRHVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLNATT---FIPNPDYYSALLWHRLMGKGVLSVATD-G  406 (551)
Q Consensus       331 ~G~~~vsdtf~~alw~lD~Lg~aA~~g~~vv~~qtl~Gg~Y~l~~~~~---~~p~P~Yy~~lL~~~l~G~~Vl~~~~~-~  406 (551)
                      +|.+++||+|++|||++|+++++|+.|++++++|.++|++|++++.+.   +.|+|+||+++||+++||.+++.+++. .
T Consensus       294 ~G~~~vs~tf~aalw~~D~~~~~a~~g~~~v~~h~g~g~~y~~l~~~~~~g~~~~P~Yy~~~l~~~~~G~~vl~~~~~~~  373 (488)
T 3vny_A          294 GGKQGVSDTFAAALWAGDLMYQQAAAGSTGINFHGGGYGWYTPVAGTPEDGFIARPEYYGMLLFAQAGAGQLLGAKLTDN  373 (488)
T ss_dssp             TCCTTTTTSTHHHHHHHHHHHHHHHHTCCCEEEECCTTCTTCSEEEETTTEEEECHHHHHHHHHHHHCSEEEEEEEEESC
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHcCCcEEEEEcccCCCcceeecCCCcccccCCcHHHHHHHHHHcCCceEeEeeccC
Confidence            999999999999999999999999999999988888899999987753   789999999999999999999988863 4


Q ss_pred             CCceEEEEEEeeC-CCcEEEEEEeCCCCCceEEEEEeccccceeccccccCCCCccccchhccccccCCccCCCCceeEE
Q 008834          407 SSSLRSYAHCSKE-REGITLLLINLSNQTDYVISVHNSMNMKLTVKGKDINGESSLSRDIKRAVSWVGSTASDGHLTREE  485 (551)
Q Consensus       407 ~~~l~~YA~c~~~-~g~vtl~lIN~~~~~~~~v~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  485 (551)
                      .+..++||||..+ ++.++|+|||++.+++++  |++.|.                                 ..+++..
T Consensus       374 ~~~~~~~ayA~~~~~~~~~vlliN~~~~~~~~--v~l~G~---------------------------------~~~~~~v  418 (488)
T 3vny_A          374 SAAPLLTAYALRGTDGRTRIALFNKNLDADVE--VAISGV---------------------------------ASPSGTV  418 (488)
T ss_dssp             TTSTTEEEEEEEETTSCEEEEEEECCSSCCEE--EEEESC---------------------------------CCSEEEE
T ss_pred             CCCccEEEEEEEcCCCcEEEEEEECCCCccEE--EEecCC---------------------------------CCceEEE
Confidence            4556666666643 578999999999987544  444441                                 1246778


Q ss_pred             EEeecCCCCcccceEEECCcccccCCCCCCCCCCceecCCC-CceEEccceEEEEEecCCCc
Q 008834          486 YHLTPKDGYLQSQTMVLNGIPLQLAEDEGIPKLDPVRVDVN-SPIYITHLSIAFIVFPNFSA  546 (551)
Q Consensus       486 y~Lt~~~~~l~s~~v~LNG~~l~~~~~g~~p~l~p~~~~~~-~~i~lpp~S~~F~vi~~~~~  546 (551)
                      ..||+++.+.. ..|++||++++.+.++.+|.-+.+.+..+ ..++|||.|++.+.|+...+
T Consensus       419 ~rLta~~~~a~-~~it~~G~s~~~~~~~~~~~~~~~~v~~g~~~v~v~a~sa~lv~f~~~~~  479 (488)
T 3vny_A          419 LRLEAPRADDT-TDVTFGGAPVGASGSWSPLVQEYVPGHSGQFVLHMRKASGALLEFAKLAA  479 (488)
T ss_dssp             EEEECSSTTCS-SCCEETTBCCCGGGCCCCSCCEEEECBTTBEEEEECSSEEEEEEECCTTC
T ss_pred             EEEECCCcccc-cCceECCEEecCCCceeecCeEEEEecCCeEEEEEcCCeEEEEEehhhhh
Confidence            99999865444 47999999998655666565555555443 46899999999999976544

PyMOL of 3vny

>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET: KHP; 1.20A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 1pz2_A* 1qw8_A* 1pz3_A	Back alignment and structure

>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP; 2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A	Back alignment and structure

>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan, hydrolase; HET: AHR; 2.7A {Clostridium thermocellum} SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A	Back alignment and structure

>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A	Back alignment and structure

>2y2w_A Arabinofuranosidase; hydrolase, arabinoxylan, glycoside hydrolase family 51; 2.50A {Bifidobacterium longum}	Back alignment and structure

>2yih_A CEL44C, xyloglucanase; hydrolase, GH44, endo-glucanase, carbohydrate-binding protei; HET: BGC; 1.70A {Paenibacillus polymyxa} PDB: 2yjq_A* 2ykk_A* 3zq9_A*	Back alignment and structure

>2e4t_A Endoglucanase, xyloglucanase; TIM barrel, TIM-like barrel, composite domain of glycosyl HY families 5, 30, 39 and 51, hydrolase; 0.96A {Clostridium thermocellum} PDB: 2e0p_A 2eo7_A* 2ej1_A* 2eex_A* 2eqd_A*	Back alignment and structure

>3ii1_A Cellulase; CELM2, glucanase-xyanase, glucanase, xylanase, bifunctional enzyme, hydrolase; HET: BGC; 2.25A {Uncultured bacterium} PDB: 3fw6_A	Back alignment and structure

>3ik2_A Endoglucanase A; TIM-like barrel, hydrolase; 2.20A {Clostridium acetobutylicum}	Back alignment and structure

>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A 2bfg_A*	Back alignment and structure

>4ekj_A Beta-xylosidase; TIM-barrel fold, hemicellulase, hydrolase; 2.50A {Caulobacter vibrioides}	Back alignment and structure

>1uhv_A Beta-xylosidase; family 39 glycoside hydrolase, xylan, xylose, covalent glycosyl-enzyme intermediate; 2.10A {Thermoanaerobacterium saccharolyticum} SCOP: b.71.1.2 c.1.8.3 PDB: 1px8_A	Back alignment and structure

>2y24_A Xylanase; hydrolase, GH5 family, aldotetraouronic acid; HET: XYP GCV PG4 PGE; 1.39A {Erwinia chrysanthemi} PDB: 1nof_A*	Back alignment and structure

>3clw_A Conserved exported protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Bacteroides fragilis}	Back alignment and structure

>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella typhimurium, O-glycosyl hydrolase family 30; 2.00A {Salmonella enterica subsp}	Back alignment and structure

>2nt0_A Glucosylceramidase; cerezyme, glucocerebrosidase, glucosylceramide, hydrolysis, disease, hydrolase; HET: NAG; 1.79A {Homo sapiens} SCOP: b.71.1.2 c.1.8.3 PDB: 1y7v_A* 2f61_A* 2j25_A* 2nsx_A* 1ogs_A* 2nt1_A* 3gxd_A* 3gxf_A* 3gxi_A* 3gxm_A* 3rik_A* 3ril_A* 2v3f_A* 2v3e_A* 2v3d_A* 2vt0_A* 2wcg_A* 2xwd_A* 2xwe_A* 2wkl_A* ...	Back alignment and structure

>3kl0_A Glucuronoxylanase XYNC; alpha beta barrel, (beta/alpha)8 barrel (beta/alpha)8 + beta motif family, hydrolase; HET: TAR HIS; 1.64A {Bacillus subtilis} PDB: 3gtn_A* 3kl3_A* 3kl5_A*	Back alignment and structure

>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*	Back alignment and structure

>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A	Back alignment and structure

>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius}	Back alignment and structure

>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*	Back alignment and structure

>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A*	Back alignment and structure

>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*	Back alignment and structure

>3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A*	Back alignment and structure

>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A*	Back alignment and structure

>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}	Back alignment and structure

>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A	Back alignment and structure

>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A*	Back alignment and structure

>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A*	Back alignment and structure

>4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A*	Back alignment and structure

>1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase, mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uz4_A*	Back alignment and structure

>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A	Back alignment and structure

>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A	Back alignment and structure

>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*	Back alignment and structure

>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3	Back alignment and structure

>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A	Back alignment and structure

>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A*	Back alignment and structure

>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A*	Back alignment and structure

>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3	Back alignment and structure

>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3	Back alignment and structure

>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3	Back alignment and structure

>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A*	Back alignment and structure

>4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila}	Back alignment and structure

>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A*	Back alignment and structure

>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A*	Back alignment and structure

>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A	Back alignment and structure

>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius}	Back alignment and structure

>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A*	Back alignment and structure

>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A	Back alignment and structure

>1nq6_A XYS1; glycoside hydrolase family 10, xylanase, xylan degradation,, hydrolase; 1.78A {Streptomyces halstedii} SCOP: c.1.8.3	Back alignment and structure

>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}	Back alignment and structure

>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3	Back alignment and structure

>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*	Back alignment and structure

>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3	Back alignment and structure

>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A*	Back alignment and structure

>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A*	Back alignment and structure

>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A	Back alignment and structure

>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina}	Back alignment and structure

>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3	Back alignment and structure

>3cui_A EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine inhibitor, TIM barrel, cellulose degradation, glycosidase, hydrolase; HET: X4S; 1.50A {Cellulomonas fimi} PDB: 3cug_A* 3cuh_A* 3cuf_A* 3cuj_A* 1fh9_A* 1fh7_A 1fh8_A 1exp_A* 1fhd_A* 1j01_A* 2exo_A 2xyl_A 2his_A*	Back alignment and structure

>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis}	Back alignment and structure

>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum}	Back alignment and structure

>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A	Back alignment and structure

>1n82_A Xylanase, intra-cellular xylanase; hydrolase; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 3mua_A* 2q8x_A* 3msd_A* 3msg_A* 3mui_A* 3ms8_A	Back alignment and structure

>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis}	Back alignment and structure

>3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold, (beta-alpha)8-TIM-barrel, glyco hydrolase, allergen; HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} SCOP: c.1.8.3 PDB: 3f55_A*	Back alignment and structure

>1xyz_A 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrolase, xylanase, family F/10 of glycosyl hydrolases, glycosyltransferase; 1.40A {Clostridium thermocellum} SCOP: c.1.8.3	Back alignment and structure

>2dep_A Xylanase B, thermostable celloxylanase; glycosidase, xylan degradation, family 10, structural genomics, NPPSFA; 1.80A {Clostridium stercorarium}	Back alignment and structure

>1ur1_A Endoxylanase; hydrolase, family 10, glycoside hydrolase, hemicellulose, xylan degradation; HET: XYS AHR; 1.43A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uqy_A* 1uqz_A* 1ur2_A* 2cnc_A*	Back alignment and structure

>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17 family, pathogenesis-related class protein (PR-2), TIM barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A	Back alignment and structure

>1i1w_A Endo-1,4-beta-xylanase; xylan degradation, hydrolase, glycosidase, enzyme, ultra HIG resolution, cryo temperature, 1; HET: PCA; 0.89A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1i1x_A* 2bnj_A* 1gok_A 1gom_A 1goo_A 1goq_A* 1gor_A* 1k6a_A 3o2l_A 3nyd_A* 1tux_A 1b31_A 1b30_A 1b3v_A* 1b3w_A* 1b3x_A* 1b3y_A* 1b3z_A* 1bg4_A	Back alignment and structure

>1v0l_A Endo-1,4-beta-xylanase A; glycoside hydrolase family 10, xylan degradation, isofagomine, hydrolase; 0.98A {Streptomyces lividans} SCOP: c.1.8.3 PDB: 1e0x_A 1e0w_A* 1od8_A 1v0k_A 1v0m_A 1v0n_A 1e0v_A* 1xas_A 2g3i_A 2g3j_A* 2g4f_A 1v6y_A	Back alignment and structure

>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), HYD inhibitor-hydrolase complex; HET: NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3	Back alignment and structure

>3niy_A Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.58A {Thermotoga petrophila rku-1} SCOP: c.1.8.3 PDB: 3nj3_A* 1vbr_A* 1vbu_A	Back alignment and structure

>2uwf_A Endoxylanase, alkaline active endoxylanase; hydrolase, xylan degradation, xylanase structure, glycosidase, alkaliphilic; 2.10A {Bacillus halodurans} PDB: 2f8q_A 2fgl_A*	Back alignment and structure

>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*	Back alignment and structure

>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus}	Back alignment and structure

>1ghs_A 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulgare} SCOP: c.1.8.3	Back alignment and structure

>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein, glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare} SCOP: c.1.8.3 PDB: 1ghr_A	Back alignment and structure

>2cyg_A Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (beta-alpha)8-TIM-barrel, B-cell epitopes, allergen, banana, hydrolase; 1.45A {Musa acuminata} SCOP: c.1.8.3	Back alignment and structure

>3u7b_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA MAN; 1.94A {Fusarium oxysporum}	Back alignment and structure

>1r85_A Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 1hiz_A* 1r87_A* 3mmd_A* 1r86_A	Back alignment and structure

>2v3g_A Endoglucanase H; beta-1 4 beta-1 3 glucanase, lichenase, hydrolase, glycosidase, glycoside hydrolase family 26; HET: BGC NOY; 1.20A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 2bv9_A 2bvd_A* 2cip_A* 2cit_A* 2vi0_A*	Back alignment and structure

>1w32_A Endo-1,4-beta-xylanase A precursor; mutant, calcium ION, thermostable, glycosyle hydrolase, family 10, error prone PCR, hydrolase; 1.2A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1w2p_A 1w2v_A 1w3h_A 1clx_A 1e5n_A* 1xys_A	Back alignment and structure

>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3	Back alignment and structure

>2d1z_A Endo-1,4-beta-D-xylanase; TIM-barrel, retaining enzyme, catalytic-site mutant, chemica hydrolase; 1.60A {Streptomyces olivaceoviridis} PDB: 2d20_A* 2d22_A 2d23_A 2d24_A* 1xyf_A 1isw_A* 1isx_A* 1isy_A* 1isv_A* 1it0_A* 1v6u_A* 1v6v_A* 1v6w_A* 1v6x_A* 1isz_A	Back alignment and structure

>3tp4_A Computational design of enzyme; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.98A {Synthetic construct} PDB: 2x2y_A 2bvy_A 2bvt_A	Back alignment and structure

>2vx5_A Cellvibrio japonicus mannanase cjman26C; hydrolase; HET: BMA; 1.47A {Cellvibrio japonicus} PDB: 2vx4_A* 2vx6_A* 2vx7_A*	Back alignment and structure

>3emz_A Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 barrel, GH10 enzyme complex, hydrolase; HET: HXH; 2.08A {Bacillus SP} SCOP: c.1.8.3 PDB: 3emq_A* 3emc_A*	Back alignment and structure

>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A*	Back alignment and structure

>1odz_A Mannanase A; hydrolase, family 26, glycoside-hydrolase, glycosynthase, manno-oligosaccharide; HET: MAN BMA; 1.4A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1r7o_A* 2whm_A* 1j9y_A 1gvy_A* 1gw1_A*	Back alignment and structure

>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A	Back alignment and structure

>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*	Back alignment and structure

>2ddx_A Beta-1,3-xylanase; glycoside hydrolase, TIM barrel, hydrola; 0.86A {Vibrio SP}	Back alignment and structure

>4f8x_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA; 1.47A {Penicillium canescens}	Back alignment and structure

>1us2_A Xylanase10C, endo-beta-1,4-xylanase; hydrolase, carbohydrate binding module, xylan degradation; HET: XYP; 1.85A {Cellvibrio japonicus} SCOP: b.18.1.11 c.1.8.3 PDB: 1us3_A	Back alignment and structure

>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		551
d1qw9a2		367	Alpha-L-arabinofuranosidase, catalytic domain {Bac	100.0
d1uhva2		346	Beta-D-xylosidase, catalytic domain {Thermoanaerob	99.75
d1ur4a_		387	Beta-1,4-galactanase {Bacillus licheniformis [TaxI	98.83
d1foba_		334	Beta-1,4-galactanase {Fungus (Aspergillus aculeatu	98.76
d1xyza_		320	Xylanase {Clostridium thermocellum, XynZ [TaxId: 1	98.56
d1hjsa_		332	Beta-1,4-galactanase {Thielavia heterothallica, ak	98.37
d1vbua1		324	Xylanase {Thermotoga maritima [TaxId: 2336]}	98.35
d1uuqa_		410	Exomannosidase {Cellvibrio mixtus [TaxId: 39650]}	98.27
d1ceoa_		340	Endoglucanase CelC {Clostridium thermocellum [TaxI	98.14
d1egza_		291	Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId:	98.06
d1nq6a_		302	Xylanase A, catalytic core {Streptomyces halstedii	98.01
d1ecea_		358	Endocellulase E1 {Acidothermus cellulolyticus [Tax	97.95
d1fh9a_		312	Xylanase A, catalytic core {Cellulomonas fimi [Tax	97.92
d1rh9a1		370	Beta-mannanase {Tomato (Lycopersicon esculentum) [	97.91
d1nofa2		277	Glycosyl hydrolase family 5 xylanase, catalytic do	97.88
d1n82a_		330	Xylanase {Bacillus stearothermophilus, Ixt6 [TaxId	97.86
d1vjza_		325	Endoglucanase homologue TM1752 {Thermotoga maritim	97.81
d7a3ha_		300	Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId	97.79
d1tvna1		293	Endoglucanase Cel5a {Pseudoalteromonas haloplankti	97.78
d1qnra_		344	Beta-mannanase {Trichoderma reesei [TaxId: 51453]}	97.76
d1wkya2		297	Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449	97.72
d1qw9a1		130	Alpha-l-arabinofuranosidase {Bacillus stearothermo	97.62
d1bqca_		302	Beta-mannanase {Thermomonospora fusca [TaxId: 2021	97.62
d1v0la_		302	Xylanase A, catalytic core {Streptomyces lividans	97.55
d1g01a_		357	Alkaline cellulase K catalytic domain {Bacillus sp	97.55
d1h1na_		305	Endocellulase EngI {Thermoascus aurantiacus [TaxId	97.51
d1bhga3		304	beta-Glucuronidase, domain 3 {Human (Homo sapiens)	97.41
d1edga_		380	Endoglucanase CelA {Clostridium cellulolyticum [Ta	97.24
d2nt0a2		354	Glucosylceramidase, catalytic domain {Human (Homo	97.23
d2c7fa1		131	Alpha-l-arabinofuranosidase {Clostridium thermocel	97.23
d1us3a2		364	Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]	97.06
d2c0ha1		350	endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed	96.72
d1ta3b_		301	Xylanase A, catalytic core {Emericella nidulans (A	96.68
d1ghsa_		306	Plant beta-glucanases {Barley (Hordeum vulgare), 1	96.44
d2v3ga1		273	Endoglucanase H N-terminal domain {Clostridium the	95.84
d2pb1a1		394	Exo-beta-(1,3)-glucanase {Yeast (Candida albicans)	95.65
d1h4pa_		408	Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom	95.03
d1r85a_		371	Xylanase {Bacillus stearothermophilus, Xt6 [TaxId:	94.94
d1i1wa_		303	Xylanase A, catalytic core {Thermoascus aurantiacu	94.45
d2cyga1		312	Plant beta-glucanases {Banana (Musa acuminata), 1,	93.89
d1aq0a_		306	Plant beta-glucanases {Barley (Hordeum vulgare), 1	93.54
d1w32a_		346	Xylanase A, catalytic core {Pseudomonas fluorescen	91.66
d1tg7a5		354	Beta-galactosidase LacA, N-terminal domain {Penici	90.97
d1nofa1		106	Glycosyl hydrolase family 5 xylanase {Erwinia chry	90.44
d2je8a5		348	Five-domain beta-mannosidase, domain 3 {Bacteroide	86.83
d1odza_		381	Mannanase A, ManA {Pseudomonas cellulosa (Cellvibr	85.2
d2bvya2		366	Mannanase A, ManA {Cellulomonas fimi [TaxId: 1708]	84.29
d2vzsa5		339	Exochitosanase CsxA {Amycolatopsis orientalis [Tax	83.83

>d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Alpha-L-arabinofuranosidase, catalytic domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=9.1e-35  Score=300.22  Aligned_cols=314  Identities=16%  Similarity=0.144  Sum_probs=217.4

Q ss_pred             ccCCCeeEEEeeccCCCCCCCCCCCCCCCccchhcccccccccCCcHHHHHHHHHcCCceEec-CCcccceeeEecCCCC
Q 008834           38 TNDEHFICATVDWWPHDKCNYNHCPWGNSSVINLLHAIWYFQDLSHPLLANAIQAFQSLRIRI-GGSLQDQVLYDVGDLK  116 (551)
Q Consensus        38 ~i~~~f~g~sie~wp~~~~~y~~~~wg~~s~~nl~~~g~~~~dl~~~~L~~l~k~L~p~~LRi-GG~~~D~~~~~~~~~~  116 (551)
                      .|+|+++|.++|  |.++|+|+|++.+.+.++|  .+|     + +++|++++|.|+|++||+ ||+.+|.++|.++.++
T Consensus         1 ~i~~~i~g~f~E--~lg~~i~~g~~~~~~~~~~--~~G-----~-R~dv~~~l~~l~~~~lR~PGG~~~~~y~W~~~iGp   70 (367)
T d1qw9a2           1 EIDKRIYGSFIE--HLGRAVYGGIYEPGHPQAD--ENG-----F-RQDVIELVKELQVPIIRYPGGNFVSGYNWEDGVGP   70 (367)
T ss_dssp             ECCGGGGEEECC--SSTTSTBTTTBCTTCTTBC--TTS-----B-BHHHHHHHHHHTCCEEEESCSGGGGGCCGGGGSSC
T ss_pred             CCChhhccchhh--hccCcccCceeCCCCCCCC--Ccc-----c-HHHHHHHHHhcCCCEEeeCCccccCccccccccCC
Confidence            489999999999  9999999999877666554  355     3 678999999999999997 9999999999988665


Q ss_pred             CCCCCCc------cCCCCcccccccccchhhHHHHHHHHHhcCCEEEEEeecCCCCccccCCCCCCCCChHHHHHHHHHH
Q 008834          117 APCHPFR------KMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYT  190 (551)
Q Consensus       117 ~~~~p~~------~~~~~~~g~~~~~lt~~~wd~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~  190 (551)
                      ...+|..      ..+++.||+          ++|++||+++|+++++++|++.+             .+++|++||+||
T Consensus        71 ~~~Rp~~~~~~w~~~~~~~~G~----------~Ef~~~~~~~gaep~~~vn~g~~-------------~~~~a~d~vey~  127 (367)
T d1qw9a2          71 KEQRPRRLDLAWKSVETNEIGL----------NEFMDWAKMVGAEVNMAVNLGTR-------------GIDAARNLVEYC  127 (367)
T ss_dssp             GGGCCCEEETTTTEEECCSSCH----------HHHHHHHHHHTCEEEEEECCSSC-------------CHHHHHHHHHHH
T ss_pred             hHHCCCccCCCCCCcCcCCCCH----------HHHHHHHHHhCCeEEEEEeCCCc-------------cHHHHHHHHHHH
Confidence            4334431      124556776          99999999999999999999876             478999999998


Q ss_pred             H----------------HcCcccceeEeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEEccCCC---
Q 008834          191 I----------------SMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGF---  251 (551)
Q Consensus       191 ~----------------~~g~~i~~wElGNEp~~~~~~g~~~ta~~Ya~d~~~~~~~~~~~~~~~~~~~~~vgp~~~---  251 (551)
                      +                ..+|+|++||||||+++.+++|. .++++|++.+++++++||+++|+    +++++++..   
T Consensus       128 n~~~~t~~~~~R~~~G~~~P~~v~yweIGNE~~g~~~~g~-~~~~~Y~~~~~~f~~amk~~dP~----i~lia~g~~~~~  202 (367)
T d1qw9a2         128 NHPSGSYYSDLRIAHGYKEPHKIKTWCLGNAMDGPWQIGH-KTAVEYGRIACEAAKVMKWVDPT----IELVVCGSSNRN  202 (367)
T ss_dssp             HCCSSSHHHHHHHHTTCCSCCCCCEEEESSCCCSTTSTTC-CCHHHHHHHHHHHHHHHHHHCTT----CEEEECCCSCTT
T ss_pred             ccCCCCHHHHHHHHcCCCCCCCceEEEeccccccccccCC-CCHHHHHHHHHHHHHHHhhcCCC----eeEEEEeCCCCC
Confidence            5                23578999999999998766664 79999999999999999999876    477766543   


Q ss_pred             --CCHHHHHHHHhhhCCCCcCEEEEeEcCCCCCCCcchhhccCC-hhHHHHHHHHHHHHHHHHH-H--hCCCCcEEEecc
Q 008834          252 --FDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILN-PQRLSRVSETFGNLKQTIE-K--HGPWASAWVGES  325 (551)
Q Consensus       252 --~~~~w~~~fl~~~g~~~id~vS~H~Y~~~~g~d~~~~~~~l~-~~~l~~~~~~~~~~~~~~~-~--~~~~~~~wl~Et  325 (551)
                        ....|.+.+++..++ .+|++|.|+|+.+...+..   ..+. ...++...+.+..+...++ .  ..++.++.++|+
T Consensus       203 ~~~~~~w~~~vl~~~~~-~iD~is~H~Y~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~iavdEw  278 (367)
T d1qw9a2         203 MPTFAEWEATVLDHTYD-HVDYISLHQYYGNRDNDTA---NYLALSLEMDDFIRSVVAIADYVKAKKRSKKTIHLSFDEW  278 (367)
T ss_dssp             STTTTHHHHHHHHHHGG-GCSEEEEEEEECCTTCCHH---HHTTTHHHHHHHHHHHHHHHHHHHHHHTCSCCCEEEEEEE
T ss_pred             CcccchHHHHHHhhccc-cCCcccccCCCCCCccchh---hhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCceEEeecc
Confidence              134799999998887 4999999999865332221   1111 1123333332222222222 2  344577899999


Q ss_pred             ccccCC--------------CCCCcchHHHHHHHHHHHhhhhhccCCeEEE---eeeccCCccc--cccCC-CCccCcch
Q 008834          326 GGAYNS--------------GGRHVSNTFVNSFWYLDQLGMSSKYNTKVYC---RQTLVGGNYG--LLNAT-TFIPNPDY  385 (551)
Q Consensus       326 ~sa~~~--------------G~~~vsdtf~~alw~lD~Lg~aA~~g~~vv~---~qtl~Gg~Y~--l~~~~-~~~p~P~Y  385 (551)
                      |..+..              +.-.-.+++.+||..+..|...-+++-.|.+   -| ++. -.+  +++.+ ....+|.|
T Consensus       279 n~wy~~~~~~~~~~~~~~~~~~l~~~~tl~~AL~~A~~L~~~~R~sD~V~mA~~A~-lvN-vl~~i~~~~~~~~~~~~~y  356 (367)
T d1qw9a2         279 NVWYHSNEADKLIEPWTVAPPLLEDIYNFEDALLVGCMLITLMKHADRVKIACLAQ-LVN-VIAPIMTEKNGPAWKQTIY  356 (367)
T ss_dssp             EECCTTHHHHTTCCTTBSSCCTTCCCCBHHHHHHHHHHHHHHHHTTTTEEEEEEEC-SBS-SSCSEEECTTSCEEECTTH
T ss_pred             ccccccccccccccccccCcccccccCcHHHHHHHHHHHHHHHHccCeeeeeehhH-hhh-hhcceEecCCCCeeeCcch
Confidence            986531              1111113444444444444444444422221   13 221 111  12222 34578999


Q ss_pred             HHHHHHHHhc
Q 008834          386 YSALLWHRLM  395 (551)
Q Consensus       386 y~~lL~~~l~  395 (551)
                      |++.|+++++
T Consensus       357 ~v~~~~s~~~  366 (367)
T d1qw9a2         357 YPFMHASVYG  366 (367)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999999884

PyMOL of d1qw9a2

>d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain {Thermoanaerobacterium saccharolyticum [TaxId: 28896]}	Back information, alignment and structure

>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]}	Back information, alignment and structure

>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}	Back information, alignment and structure

>d1xyza_ c.1.8.3 (A:) Xylanase {Clostridium thermocellum, XynZ [TaxId: 1515]}	Back information, alignment and structure

>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]}	Back information, alignment and structure

>d1vbua1 c.1.8.3 (A:517-840) Xylanase {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]}	Back information, alignment and structure

>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]}	Back information, alignment and structure

>d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 556]}	Back information, alignment and structure

>d1nq6a_ c.1.8.3 (A:) Xylanase A, catalytic core {Streptomyces halstedii [TaxId: 1944]}	Back information, alignment and structure

>d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]}	Back information, alignment and structure

>d1fh9a_ c.1.8.3 (A:) Xylanase A, catalytic core {Cellulomonas fimi [TaxId: 1708]}	Back information, alignment and structure

>d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]}	Back information, alignment and structure

>d1nofa2 c.1.8.3 (A:44-320) Glycosyl hydrolase family 5 xylanase, catalytic domain {Erwinia chrysanthemi [TaxId: 556]}	Back information, alignment and structure

>d1n82a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Ixt6 [TaxId: 1422]}	Back information, alignment and structure

>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId: 76935]}	Back information, alignment and structure

>d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas haloplanktis [TaxId: 228]}	Back information, alignment and structure

>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]}	Back information, alignment and structure

>d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]}	Back information, alignment and structure

>d1qw9a1 b.71.1.2 (A:5-17,A:385-501) Alpha-l-arabinofuranosidase {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]}	Back information, alignment and structure

>d1v0la_ c.1.8.3 (A:) Xylanase A, catalytic core {Streptomyces lividans [TaxId: 1916]}	Back information, alignment and structure

>d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]}	Back information, alignment and structure

>d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus [TaxId: 5087]}	Back information, alignment and structure

>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]}	Back information, alignment and structure

>d2nt0a2 c.1.8.3 (A:78-431) Glucosylceramidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2c7fa1 b.71.1.2 (A:2-16,A:387-502) Alpha-l-arabinofuranosidase {Clostridium thermocellum [TaxId: 1515]}	Back information, alignment and structure

>d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]}	Back information, alignment and structure

>d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]}	Back information, alignment and structure

>d1ta3b_ c.1.8.3 (B:) Xylanase A, catalytic core {Emericella nidulans (Aspergillus nidulans) [TaxId: 162425]}	Back information, alignment and structure

>d1ghsa_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-beta-glucanase [TaxId: 4513]}	Back information, alignment and structure

>d2v3ga1 c.1.8.3 (A:8-280) Endoglucanase H N-terminal domain {Clostridium thermocellum [TaxId: 1515]}	Back information, alignment and structure

>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]}	Back information, alignment and structure

>d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 1422]}	Back information, alignment and structure

>d1i1wa_ c.1.8.3 (A:) Xylanase A, catalytic core {Thermoascus aurantiacus [TaxId: 5087]}	Back information, alignment and structure

>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]}	Back information, alignment and structure

>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]}	Back information, alignment and structure

>d1w32a_ c.1.8.3 (A:) Xylanase A, catalytic core {Pseudomonas fluorescens [TaxId: 294]}	Back information, alignment and structure

>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]}	Back information, alignment and structure

>d1nofa1 b.71.1.2 (A:31-43,A:321-413) Glycosyl hydrolase family 5 xylanase {Erwinia chrysanthemi [TaxId: 556]}	Back information, alignment and structure

>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3 {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d1odza_ c.1.8.3 (A:) Mannanase A, ManA {Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]}	Back information, alignment and structure

>d2bvya2 c.1.8.3 (A:5-370) Mannanase A, ManA {Cellulomonas fimi [TaxId: 1708]}	Back information, alignment and structure

>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]}	Back information, alignment and structure